Query 028108
Match_columns 213
No_of_seqs 117 out of 621
Neff 6.4
Searched_HMMs 29240
Date Mon Mar 25 10:05:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028108.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028108hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3frt_A Charged multivesicular 100.0 6.7E-53 2.3E-57 357.6 11.0 203 5-213 15-218 (218)
2 2gd5_A Charged multivesicular 100.0 4.6E-42 1.6E-46 283.4 5.2 163 6-171 16-178 (179)
3 3eab_G CHMP1B; spastin, MIT, E 98.9 1.7E-10 6E-15 76.0 0.4 49 147-213 2-50 (50)
4 3frt_A Charged multivesicular 98.1 2.3E-06 7.7E-11 72.2 5.3 152 5-161 4-167 (218)
5 2gd5_A Charged multivesicular 97.5 4.7E-05 1.6E-09 61.9 3.1 147 9-158 12-164 (179)
6 2xze_Q Charged multivesicular 97.1 8.6E-05 2.9E-09 46.2 0.3 16 198-213 25-40 (40)
7 3um3_B Charged multivesicular 96.8 0.003 1E-07 47.2 6.8 70 103-172 2-77 (104)
8 2v6x_B DOA4-independent degrad 96.7 0.00041 1.4E-08 46.0 0.9 12 201-212 40-51 (54)
9 3ggz_E Vacuolar protein-sortin 90.8 0.13 4.4E-06 29.5 1.9 16 198-213 14-29 (29)
10 3frr_A Uncharacterized protein 82.5 18 0.00062 29.3 14.7 95 25-122 33-136 (191)
11 3twe_A Alpha4H; unknown functi 82.3 0.77 2.6E-05 25.1 1.9 13 200-212 9-21 (27)
12 2hh7_A Hypothetical protein CS 79.9 10 0.00035 28.6 8.1 62 56-138 9-70 (119)
13 3ggy_A Increased sodium tolera 71.9 38 0.0013 27.4 14.2 130 25-162 32-184 (193)
14 3aai_A Copper homeostasis oper 63.3 31 0.0011 24.6 7.1 48 56-103 13-61 (94)
15 4adz_A CSOR; transcription, co 60.1 33 0.0011 26.4 7.1 51 53-103 48-98 (136)
16 1yzm_A FYVE-finger-containing 60.1 31 0.0011 22.1 6.5 41 24-64 8-48 (51)
17 1z0k_B FYVE-finger-containing 58.4 40 0.0014 22.9 6.5 42 23-64 25-66 (69)
18 3v1a_A Computational design, M 52.0 42 0.0014 21.2 5.6 40 23-62 6-45 (48)
19 1gp8_A Protein (scaffolding pr 50.9 10 0.00034 23.1 2.2 27 29-55 12-38 (40)
20 2r6a_C DNAG primase, helicase 44.7 52 0.0018 23.7 6.0 37 24-60 104-140 (143)
21 3s4r_A Vimentin; alpha-helix, 41.1 92 0.0032 22.0 7.1 53 20-72 25-77 (93)
22 1z0j_B FYVE-finger-containing 35.5 94 0.0032 20.4 6.5 39 25-63 16-54 (59)
23 2luh_B Vacuolar protein-sortin 27.3 48 0.0016 21.9 2.7 53 104-156 1-53 (59)
24 2l16_A SEC-independent protein 25.1 32 0.0011 23.8 1.7 39 2-41 20-58 (78)
25 4abm_A Charged multivesicular 24.0 1.8E+02 0.006 19.9 10.1 64 10-78 5-76 (79)
26 3sjq_C Small conductance calci 23.1 1.6E+02 0.0056 20.7 5.1 48 29-76 4-61 (87)
27 1x4t_A Hypothetical protein LO 22.4 1.2E+02 0.0041 21.7 4.3 28 10-37 51-78 (92)
28 4g3b_A Alpha4F3D; alpha helix, 20.7 62 0.0021 17.3 1.9 13 200-212 9-21 (26)
No 1
>3frt_A Charged multivesicular BODY protein 3; ESCRT, ESCRT-111, CHMP, IST1, coiled coil, cytoplasm, lipoprotein, membrane, myristate, phosphoprotein; 4.00A {Homo sapiens}
Probab=100.00 E-value=6.7e-53 Score=357.63 Aligned_cols=203 Identities=40% Similarity=0.574 Sum_probs=131.1
Q ss_pred hhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028108 5 AKKIHTGLLLLLLCCVLDIQREEKNVQKSIKESAKRNDMGSAKALAKEILMSRKAVNRLYENKAQLNSISMHLGESVAIA 84 (213)
Q Consensus 5 ~~~~~~~~~r~l~R~i~~l~~eEkkl~~~IKkaakkg~~~~arilAkelvr~Rk~~~~l~~~ka~L~sV~~~lqt~~s~~ 84 (213)
.++..+...|+|+|++++|+++|++++.+||++||+||+++|||||++|||+|+++.+||++++||++|++||++++++.
T Consensus 15 ~~r~Lr~~~R~LdR~~~kle~eEkk~~~~IKkaakkg~~~~arilAkelVR~Rk~~~rl~~~kaqL~sV~~rlqt~~s~~ 94 (218)
T 3frt_A 15 WSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKDVCIVLAKEMIRSRKAVSKLYASKAHMNSVLMGMKNQLAVL 94 (218)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHhhhHHHHHhhhhhhccCCCChhHHHHHHHHHHHHHHcchhhh
Q 028108 85 RTVGHLSKSTEVMKLVNNLMKAPEVAVTMQEFSKEMTKAGIIEEMVNDTIDTALDSDDIEEETEEKVDKVLSEIAGETAA 164 (213)
Q Consensus 85 ~~~~sm~~s~~~M~~~n~~m~l~~l~~~M~~f~ke~~~~~~~~emm~d~~d~~~~~~~~eee~d~~v~kVldE~g~~~~~ 164 (213)
+++++|++++++|+.||++||+|+|+++|++|++||+++||++|||+|+|++++++++++|++|++|+|||+|||.+
T Consensus 95 ~v~~sM~~st~~M~~~n~~m~l~~i~~tM~efekE~~k~~i~eEmm~Da~d~~~~~~~~eee~d~~v~kVldEi~~~--- 171 (218)
T 3frt_A 95 RVAGSLQKSTEVMKAMQSLVKIPEIQATMRELSKEMMKAGIIEEMLEDTFESMDDQEEMEEEAEMEIDRILFEITAG--- 171 (218)
T ss_dssp ----CCCCCHHHHHHHHHSTTSHHHHHHHHHHHHHHHHHSCC----------------CTTSTTTHHHHHHHTC------
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcccccCCchHHHHHHHHHHHHHHhHh---
Confidence 99999999999999999999999999999999999999999999999999998888889999999999999999965
Q ss_pred cCchhhhhhccccccccccchhHHhhhh-ccCCChHhHHHHHHHHHhhhC
Q 028108 165 QLPEAVRKERSRVPAQRASTSQQEQAIA-EGVDDEEELEELRARLDKVRS 213 (213)
Q Consensus 165 ~lp~~p~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~L~~RL~aLr~ 213 (213)
+|+.+|.++....|.+. ++...+.. +++++++++++|++||++|||
T Consensus 172 ~l~~~p~~~~~~~~~~~---~~~~~~~~~~~e~~~~~~~~m~~rl~al~s 218 (218)
T 3frt_A 172 ALGKAPSKVTDALPEPE---PPGAMAASEDEEEEEEALEAMQSRLATLRS 218 (218)
T ss_dssp --------------------------------------------------
T ss_pred HhhcCCCCCCCCCCCcc---ccccccccccchhhHHHHHHHHHHHHHhcC
Confidence 45555443111122211 10011111 123345668999999999996
No 2
>2gd5_A Charged multivesicular BODY protein 3; CHMP3, ESCRT-III, protein transport; 2.80A {Homo sapiens} PDB: 3frv_A
Probab=100.00 E-value=4.6e-42 Score=283.41 Aligned_cols=163 Identities=43% Similarity=0.614 Sum_probs=130.7
Q ss_pred hhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028108 6 KKIHTGLLLLLLCCVLDIQREEKNVQKSIKESAKRNDMGSAKALAKEILMSRKAVNRLYENKAQLNSISMHLGESVAIAR 85 (213)
Q Consensus 6 ~~~~~~~~r~l~R~i~~l~~eEkkl~~~IKkaakkg~~~~arilAkelvr~Rk~~~~l~~~ka~L~sV~~~lqt~~s~~~ 85 (213)
++-.+..+|+|+|++++|+++|++++.+||+++++||+++|||||++|||.|+++.+||.++++|++|+++|+++.++.+
T Consensus 16 ~~~L~~~~r~Ldr~~~kle~~ekk~~~~Ikka~k~g~~~~aki~Ak~lvr~rk~~~~l~~~~a~l~~v~~~lqt~~~~~~ 95 (179)
T 2gd5_A 16 SLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKDVCIVLAKEMIRSRKAVSKLYASKAHMNSVLMGMKNQLAVLR 95 (179)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35567788899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHhhhHHHHHhhhhhhccCCCChhHHHHHHHHHHHHHHcchhhhc
Q 028108 86 TVGHLSKSTEVMKLVNNLMKAPEVAVTMQEFSKEMTKAGIIEEMVNDTIDTALDSDDIEEETEEKVDKVLSEIAGETAAQ 165 (213)
Q Consensus 86 ~~~sm~~s~~~M~~~n~~m~l~~l~~~M~~f~ke~~~~~~~~emm~d~~d~~~~~~~~eee~d~~v~kVldE~g~~~~~~ 165 (213)
++++|++++++|+.+|++||+|+|+++|++|++|++++|+++|||+|+|++++++++++|++|++|++||+|+|+ ++
T Consensus 96 v~~am~~~~~~M~~~n~~m~l~~i~~~M~e~~~e~~~~~~~~E~m~d~~~~~~~~~~~eee~d~~v~kVl~E~~~---~~ 172 (179)
T 2gd5_A 96 VAGSLQKSTEVMKAMQSLVKIPEIQATMRELSKEMMKAGIIEEMLEDTFESMDDQEEMEEEAEMEIDRILFEITA---GA 172 (179)
T ss_dssp HTSSCCCCSHHHHTTTSSTTSSSCCHHHHHHHHHHHHHTSCC-------------------CTTHHHHTTCCC-------
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCcHHHHHHHHHHHHHHhhH---hh
Confidence 999999999999999999999999999999999999999999999999999888888999999999999999996 47
Q ss_pred Cchhhh
Q 028108 166 LPEAVR 171 (213)
Q Consensus 166 lp~~p~ 171 (213)
||.+|+
T Consensus 173 l~~~P~ 178 (179)
T 2gd5_A 173 LGKAPS 178 (179)
T ss_dssp ------
T ss_pred cccCCC
Confidence 887775
No 3
>3eab_G CHMP1B; spastin, MIT, ESCRT, alternative splicing, ATP- binding, cytoplasm, disease mutation, hereditary spastic paraplegia, nucleotide-binding; 2.50A {Homo sapiens}
Probab=98.90 E-value=1.7e-10 Score=75.96 Aligned_cols=49 Identities=20% Similarity=0.338 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHcchhhhcCchhhhhhccccccccccchhHHhhhhccCCChHhHHHHHHHHHhhhC
Q 028108 147 TEEKVDKVLSEIAGETAAQLPEAVRKERSRVPAQRASTSQQEQAIAEGVDDEEELEELRARLDKVRS 213 (213)
Q Consensus 147 ~d~~v~kVldE~g~~~~~~lp~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~L~~RL~aLr~ 213 (213)
+|++|+||+||+|++++.+||.+|.+. + +. . .. ..+.|+|.+||++||+
T Consensus 2 Vd~Lm~qVaDE~Glel~~~L~~~~~~~-~--~~---------~-~~-----~~~eD~L~~RLaaLR~ 50 (50)
T 3eab_G 2 VDMLLQEMADEAGLDLNMELPQGQTGS-V--GT---------S-VA-----SAEQDELSQRLARLRD 50 (50)
T ss_dssp CCHHHHHHHHHTTCC---------CHH-H--HH---------H-HH-----HHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHhCchHHhhcccccccc-c--CC---------C-CC-----cccHHHHHHHHHHHhC
Confidence 688999999999999999999988751 1 00 0 11 1234899999999996
No 4
>3frt_A Charged multivesicular BODY protein 3; ESCRT, ESCRT-111, CHMP, IST1, coiled coil, cytoplasm, lipoprotein, membrane, myristate, phosphoprotein; 4.00A {Homo sapiens}
Probab=98.13 E-value=2.3e-06 Score=72.20 Aligned_cols=152 Identities=15% Similarity=0.188 Sum_probs=76.2
Q ss_pred hhhhhhHHHHHHHH----HHHHhHHHHHHHHHH---HHHHHHcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028108 5 AKKIHTGLLLLLLC----CVLDIQREEKNVQKS---IKESAKRNDMGSAKALAKEILMSRKAVNRLYENKAQLNSISMHL 77 (213)
Q Consensus 5 ~~~~~~~~~r~l~R----~i~~l~~eEkkl~~~---IKkaakkg~~~~arilAkelvr~Rk~~~~l~~~ka~L~sV~~~l 77 (213)
.++.+..++|+..| .++.|+|+-.++..+ ++..+|+--..+=.--|+=+. +...|.-+...+|....++|
T Consensus 4 ~~~~p~e~~r~~~r~Lr~~~R~LdR~~~kle~eEkk~~~~IKkaakkg~~~~arilA---kelVR~Rk~~~rl~~~kaqL 80 (218)
T 3frt_A 4 QEKPPKELVNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKDVCIVLA---KEMIRSRKAVSKLYASKAHM 80 (218)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 35566666665555 555666666655544 333333321111111112111 23445555667788888899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHH--HHHHH---HHHHhhhHHHHHhhhhhhccCCCChhHHHHHHHH
Q 028108 78 GESVAIARTVGHLSKSTEVMKLVNNLMKAPEVAVTM--QEFSK---EMTKAGIIEEMVNDTIDTALDSDDIEEETEEKVD 152 (213)
Q Consensus 78 qt~~s~~~~~~sm~~s~~~M~~~n~~m~l~~l~~~M--~~f~k---e~~~~~~~~emm~d~~d~~~~~~~~eee~d~~v~ 152 (213)
++...-.+...++..++..|+.+.+. +..+.+.| +++.+ +|++--+.-++++++|++++++.+++++.+++++
T Consensus 81 ~sV~~rlqt~~s~~~v~~sM~~st~~--M~~~n~~m~l~~i~~tM~efekE~~k~~i~eEmm~Da~d~~~~~~~~eee~d 158 (218)
T 3frt_A 81 NSVLMGMKNQLAVLRVAGSLQKSTEV--MKAMQSLVKIPEIQATMRELSKEMMKAGIIEEMLEDTFESMDDQEEMEEEAE 158 (218)
T ss_dssp HHHHHHHHHHHHCC----CCCCCHHH--HHHHHHSTTSHHHHHHHHHHHHHHHHHSCC----------------CTTSTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHcCCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcccccCCchHHHH
Confidence 99888888888888888888888777 45555555 45544 4555555566788999999886655556677888
Q ss_pred HHHHHHcch
Q 028108 153 KVLSEIAGE 161 (213)
Q Consensus 153 kVldE~g~~ 161 (213)
.+++.+--+
T Consensus 159 ~~v~kVldE 167 (218)
T 3frt_A 159 MEIDRILFE 167 (218)
T ss_dssp THHHHHHHT
T ss_pred HHHHHHHHH
Confidence 888877333
No 5
>2gd5_A Charged multivesicular BODY protein 3; CHMP3, ESCRT-III, protein transport; 2.80A {Homo sapiens} PDB: 3frv_A
Probab=97.50 E-value=4.7e-05 Score=61.91 Aligned_cols=147 Identities=14% Similarity=0.180 Sum_probs=75.3
Q ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028108 9 HTGLLLLLLCCVLDIQREEKNVQKSIKESAKRNDMGSAKALAKEILMSR-KAVNRLYENKAQLNSISMHLGESVAIARTV 87 (213)
Q Consensus 9 ~~~~~r~l~R~i~~l~~eEkkl~~~IKkaakkg~~~~arilAkelvr~R-k~~~~l~~~ka~L~sV~~~lqt~~s~~~~~ 87 (213)
.+...+.|.+.++.|+|+-.++..+-|+.-..= ..+++--..+.+|.. +...|.-+...+|....++|++.....+..
T Consensus 12 lr~~~~~L~~~~r~Ldr~~~kle~~ekk~~~~I-kka~k~g~~~~aki~Ak~lvr~rk~~~~l~~~~a~l~~v~~~lqt~ 90 (179)
T 2gd5_A 12 VNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSV-KDAAKKGQKDVCIVLAKEMIRSRKAVSKLYASKAHMNSVLMGMKNQ 90 (179)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566777888888888888877665442110 112221111222211 223333445667777788888888877777
Q ss_pred HHHHHHHHHHHHHHhhCChHHHHHHH-----HHHHHHHHHhhhHHHHHhhhhhhccCCCChhHHHHHHHHHHHHHH
Q 028108 88 GHLSKSTEVMKLVNNLMKAPEVAVTM-----QEFSKEMTKAGIIEEMVNDTIDTALDSDDIEEETEEKVDKVLSEI 158 (213)
Q Consensus 88 ~sm~~s~~~M~~~n~~m~l~~l~~~M-----~~f~ke~~~~~~~~emm~d~~d~~~~~~~~eee~d~~v~kVldE~ 158 (213)
.++..++.+|+..++. +..+.+.| ...-.+|++.-..-++++++|++++++..++++.+++++.+++.+
T Consensus 91 ~~~~~v~~am~~~~~~--M~~~n~~m~l~~i~~~M~e~~~e~~~~~~~~E~m~d~~~~~~~~~~~eee~d~~v~kV 164 (179)
T 2gd5_A 91 LAVLRVAGSLQKSTEV--MKAMQSLVKIPEIQATMRELSKEMMKAGIIEEMLEDTFESMDDQEEMEEEAEMEIDRI 164 (179)
T ss_dssp HHHHHHTSSCCCCSHH--HHTTTSSTTSSSCCHHHHHHHHHHHHHTSCC-------------------CTTHHHHT
T ss_pred HHHHHHHHHHHHHHHH--HHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCcHHHHHHHHHHH
Confidence 7777777777776666 34444444 344455555555556668999998876555556667777777665
No 6
>2xze_Q Charged multivesicular BODY protein 3; hydrolase-protein transport complex; 1.75A {Homo sapiens}
Probab=97.10 E-value=8.6e-05 Score=46.22 Aligned_cols=16 Identities=50% Similarity=0.779 Sum_probs=13.9
Q ss_pred hHhHHHHHHHHHhhhC
Q 028108 198 EEELEELRARLDKVRS 213 (213)
Q Consensus 198 ~~~~d~L~~RL~aLr~ 213 (213)
++++..||.||++|||
T Consensus 25 Eedi~~MqsRLaALRS 40 (40)
T 2xze_Q 25 EEALEAMQSRLATLRS 40 (40)
T ss_dssp HHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhcC
Confidence 4567899999999997
No 7
>3um3_B Charged multivesicular BODY protein 4B; alpha-helix of C-terminal tail of CHMP4B, ESCRT-III, CHMPS, protein-transport protein complex, BROX; 3.80A {Homo sapiens}
Probab=96.84 E-value=0.003 Score=47.20 Aligned_cols=70 Identities=21% Similarity=0.253 Sum_probs=45.6
Q ss_pred hCChHHHHHHHHHHHHHHHHhhhHHHHHhhhhh--hccCCCChhHHHHHHHHHHHHHHcch----hhhcCchhhhh
Q 028108 103 LMKAPEVAVTMQEFSKEMTKAGIIEEMVNDTID--TALDSDDIEEETEEKVDKVLSEIAGE----TAAQLPEAVRK 172 (213)
Q Consensus 103 ~m~l~~l~~~M~~f~ke~~~~~~~~emm~d~~d--~~~~~~~~eee~d~~v~kVldE~g~~----~~~~lp~~p~~ 172 (213)
.|++.++..+|.++.-+++..+=+++++...+. +.+|+++.++|-+.+-...+++--++ ....||++|++
T Consensus 2 ~m~idkVe~lmDei~E~~e~~~EI~e~Ls~~~~~~~~~DEdELe~ELe~Le~e~l~~~~l~~~~~~~~~LP~vP~~ 77 (104)
T 3um3_B 2 NMDIDKVDELMQDIADQQELAEEISTAISKPVGFGEEFDEDELMAELEELEQEELDKNLLEISGPETVPLPNVPSI 77 (104)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCC
Confidence 478999999999999999999999999988763 22332233333344444444442222 22358888876
No 8
>2v6x_B DOA4-independent degradation protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=96.69 E-value=0.00041 Score=46.03 Aligned_cols=12 Identities=33% Similarity=0.689 Sum_probs=11.1
Q ss_pred HHHHHHHHHhhh
Q 028108 201 LEELRARLDKVR 212 (213)
Q Consensus 201 ~d~L~~RL~aLr 212 (213)
.||||+||++||
T Consensus 40 ddDLQARLdsLR 51 (54)
T 2v6x_B 40 DDDLQARLNTLK 51 (54)
T ss_dssp CHHHHHHHHHHH
T ss_pred hHHHHHHHHHhc
Confidence 389999999998
No 9
>3ggz_E Vacuolar protein-sorting-associated protein 46; novel MIM binding mode, phosphoprotein, coiled coil, endosome, membrane; 3.80A {Saccharomyces cerevisiae}
Probab=90.80 E-value=0.13 Score=29.53 Aligned_cols=16 Identities=31% Similarity=0.557 Sum_probs=13.1
Q ss_pred hHhHHHHHHHHHhhhC
Q 028108 198 EEELEELRARLDKVRS 213 (213)
Q Consensus 198 ~~~~d~L~~RL~aLr~ 213 (213)
++.+|.|-+||.+||+
T Consensus 14 eekEDkLAqRLRALR~ 29 (29)
T 3ggz_E 14 DEKEDKLAQRLRALRG 29 (29)
T ss_pred chhhHHHHHHHHHHcC
Confidence 3445899999999995
No 10
>3frr_A Uncharacterized protein KIAA0174; ESCRT, ESCRT-III, CHMP, IST1, alternative splicing, phosphoprotein, protein binding; 1.80A {Homo sapiens} PDB: 3frs_A
Probab=82.52 E-value=18 Score=29.30 Aligned_cols=95 Identities=14% Similarity=0.126 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Q 028108 25 REEKNVQKSIKESAKRNDMGSAKALAKEILMSRKAVNRLYENKAQLNSISMHLGESVAIA----RTVGHLSKSTEVMKLV 100 (213)
Q Consensus 25 ~eEkkl~~~IKkaakkg~~~~arilAkelvr~Rk~~~~l~~~ka~L~sV~~~lqt~~s~~----~~~~sm~~s~~~M~~~ 100 (213)
..-++...+|-+.++.|..+.||+-+.++||--+.+.=|--+---.+-+..|+....... .+..++.+. +=..
T Consensus 33 ~~~k~~RrdIA~LL~~gk~~~AriRvE~iI~ed~~ie~~EilElyCelL~~R~~li~~~k~cp~~l~EAvssl---IyAa 109 (191)
T 3frr_A 33 ELAQKARKEIADYLAAGKDERARIRVEHIIREDYLVEAMEILELYCDLLLARFGLIQSMKELDSGLAESVSTL---IWAA 109 (191)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHSCSSCCGGGHHHHHHH---HHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHH---HHhh
Confidence 345678889999999999999999999999999998888777777777777776665433 233344433 7677
Q ss_pred Hhh-CChHHHHHH----HHHHHHHHHH
Q 028108 101 NNL-MKAPEVAVT----MQEFSKEMTK 122 (213)
Q Consensus 101 n~~-m~l~~l~~~----M~~f~ke~~~ 122 (213)
.+. -++|+|..+ ...|.++|..
T Consensus 110 ~R~~~elpEL~~ir~~l~~KyGkeF~~ 136 (191)
T 3frr_A 110 PRLQSEVAELKIVADQLCAKYSKEYGK 136 (191)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHCHHHHH
T ss_pred hcccccChHHHHHHHHHHHHhCHHHHH
Confidence 775 789998754 5556666654
No 11
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=82.27 E-value=0.77 Score=25.13 Aligned_cols=13 Identities=62% Similarity=0.961 Sum_probs=11.4
Q ss_pred hHHHHHHHHHhhh
Q 028108 200 ELEELRARLDKVR 212 (213)
Q Consensus 200 ~~d~L~~RL~aLr 212 (213)
+++|||+||..||
T Consensus 9 eledlqerlrklr 21 (27)
T 3twe_A 9 ELEDLQERLRKLR 21 (27)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4689999999987
No 12
>2hh7_A Hypothetical protein CSOR; 4-helix bundle, unknown function; 2.55A {Mycobacterium tuberculosis}
Probab=79.89 E-value=10 Score=28.57 Aligned_cols=62 Identities=19% Similarity=0.304 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHhhhHHHHHhhhhh
Q 028108 56 SRKAVNRLYENKAQLNSISMHLGESVAIARTVGHLSKSTEVMKLVNNLMKAPEVAVTMQEFSKEMTKAGIIEEMVNDTID 135 (213)
Q Consensus 56 ~Rk~~~~l~~~ka~L~sV~~~lqt~~s~~~~~~sm~~s~~~M~~~n~~m~l~~l~~~M~~f~ke~~~~~~~~emm~d~~d 135 (213)
.++...||-+..-|+.+|..-|..=.....+...+..+..++..++.. ++++-+...+.
T Consensus 9 kk~ll~RLkRIeGQvrGI~rMIEedr~C~DIL~QlaAVrsAL~~~~~~---------------------ILe~HL~~Cv~ 67 (119)
T 2hh7_A 9 KRAALNRLKTVRGHLDGIVRMLESDAYCVDVMKQISAVQSSLERANRV---------------------MLHNHLETCFS 67 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHH
Confidence 456788899999999999988887777777777777776666666544 56777777776
Q ss_pred hcc
Q 028108 136 TAL 138 (213)
Q Consensus 136 ~~~ 138 (213)
+..
T Consensus 68 ~a~ 70 (119)
T 2hh7_A 68 TAV 70 (119)
T ss_dssp TCS
T ss_pred hHh
Confidence 654
No 13
>3ggy_A Increased sodium tolerance protein 1; ESCRT-III like, phosphoprotein, protein transport, endocytosis; 1.70A {Saccharomyces cerevisiae} PDB: 3ggz_A
Probab=71.86 E-value=38 Score=27.40 Aligned_cols=130 Identities=8% Similarity=0.018 Sum_probs=83.3
Q ss_pred HHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------H----HHHHHHHH
Q 028108 25 REEKNVQKSIKESAKRNDMGSAKALAKEILMSRKAVNRLYENKAQLNSISMHLGESVAI--------A----RTVGHLSK 92 (213)
Q Consensus 25 ~eEkkl~~~IKkaakkg~~~~arilAkelvr~Rk~~~~l~~~ka~L~sV~~~lqt~~s~--------~----~~~~sm~~ 92 (213)
..-++...+|-+.++.|..+.||+-+.++||--+.+.=|--+---.+-+..|+.....+ . .+..++.+
T Consensus 32 ~~~k~~RrdIA~LL~~gk~~~AriRvE~iI~ed~~ie~~EilElyCelL~aR~~ll~~~~~e~~~~~k~cp~~l~EAvss 111 (193)
T 3ggy_A 32 AIAKQSRRQVAQLLLTNKEQKAHYRVETLIHDDIHIELLEILELYCELLLARVQVINDISTEEQLVKEHMDDGINEAIRS 111 (193)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTTCCSHHHHHHHSSSSSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCHHHHHHHHH
Confidence 34567788899999999999999999999999999888877777777777776655442 1 23333333
Q ss_pred HHHHHHHHHhhCChHHHHH----HHHHHHHHHHHh------hhHHHHHhhhhhhccCCCC-hhHHHHHHHHHHHHHHcch
Q 028108 93 STEVMKLVNNLMKAPEVAV----TMQEFSKEMTKA------GIIEEMVNDTIDTALDSDD-IEEETEEKVDKVLSEIAGE 161 (213)
Q Consensus 93 s~~~M~~~n~~m~l~~l~~----~M~~f~ke~~~~------~~~~emm~d~~d~~~~~~~-~eee~d~~v~kVldE~g~~ 161 (213)
. +=...+..++|++.. .+..|.++|... |+...++.- +. ... +.+-++..+..|+.++|++
T Consensus 112 l---IyAa~R~~elpEL~~ir~~l~~KyGkeF~~~a~en~~gVn~kiv~k-Ls----~~~P~~elv~~yL~EIA~ey~V~ 183 (193)
T 3ggy_A 112 L---IYAILFVDEVKELSQLKDLMAWKINVEFVNGVIADHIDVPEKIIKK-CS----PSVPKEELVDLYLKEIAKTYDVP 183 (193)
T ss_dssp H---HHHGGGCTTCTTHHHHHHHHHHHTCHHHHHHHHHHCTTCCHHHHHH-HS----CCCCCHHHHHHHHHHHHHHTTCC
T ss_pred H---HHhcccCCCChHHHHHHHHHHHHhCHHHHHHHHhcCCCCCHHHHHH-cC----CCCcCHHHHHHHHHHHHHHcCCC
Confidence 3 666666678999864 455566666542 333333322 21 112 2345555666666666654
Q ss_pred h
Q 028108 162 T 162 (213)
Q Consensus 162 ~ 162 (213)
.
T Consensus 184 w 184 (193)
T 3ggy_A 184 Y 184 (193)
T ss_dssp H
T ss_pred C
Confidence 3
No 14
>3aai_A Copper homeostasis operon regulatory protein; all alpha proteins, 4-helix bundle, transcription; 2.10A {Thermus thermophilus}
Probab=63.31 E-value=31 Score=24.62 Aligned_cols=48 Identities=19% Similarity=0.232 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhh
Q 028108 56 SRKAVNRLYENKAQLNSISMHLGESV-AIARTVGHLSKSTEVMKLVNNL 103 (213)
Q Consensus 56 ~Rk~~~~l~~~ka~L~sV~~~lqt~~-s~~~~~~sm~~s~~~M~~~n~~ 103 (213)
.++...||-+...|+.+|..-+..=. ....+...+..+..++..++..
T Consensus 13 k~~~l~RLkRieGQv~gI~rMiEe~~~~C~dIl~QlaAvr~Al~~~~~~ 61 (94)
T 3aai_A 13 REEARRRLLSAKGHLEGILRMLEDEKVYCVDVLKQLKAVEGALDRVGEM 61 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSSEECHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHHH
Confidence 45677889999999999998777766 6777776666666666665543
No 15
>4adz_A CSOR; transcription, copper sensor; 1.70A {Streptomyces lividans}
Probab=60.13 E-value=33 Score=26.35 Aligned_cols=51 Identities=16% Similarity=0.152 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 028108 53 ILMSRKAVNRLYENKAQLNSISMHLGESVAIARTVGHLSKSTEVMKLVNNL 103 (213)
Q Consensus 53 lvr~Rk~~~~l~~~ka~L~sV~~~lqt~~s~~~~~~sm~~s~~~M~~~n~~ 103 (213)
.-..++...||-+..-|+.+|..-|..=.....+...+..+..++..++..
T Consensus 48 ~~~Kk~ll~RLkRIeGQvrGI~rMIEedr~C~DIL~QlaAVrsAL~~v~~~ 98 (136)
T 4adz_A 48 HKQKAEHLKRLRRIEGQIRGLQRMVDEDVYCIDILTQVSASTKALQSFALQ 98 (136)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 345677888999999999999988777667777766666665556555543
No 16
>1yzm_A FYVE-finger-containing RAB5 effector protein rabenosyn-5; RAB GTPase, vesicular trafficking, protein transport; 1.50A {Homo sapiens} SCOP: a.2.19.1
Probab=60.10 E-value=31 Score=22.09 Aligned_cols=41 Identities=10% Similarity=0.202 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHHHHH
Q 028108 24 QREEKNVQKSIKESAKRNDMGSAKALAKEILMSRKAVNRLY 64 (213)
Q Consensus 24 ~~eEkkl~~~IKkaakkg~~~~arilAkelvr~Rk~~~~l~ 64 (213)
..+..-++.-|+.|.+.|..+.+.+|..+|=.....+.++-
T Consensus 8 ~EQ~~~I~~~I~qAk~~~r~DEV~~Le~NLrEL~~ei~~~~ 48 (51)
T 1yzm_A 8 LQQIHNITSFIRQAKAAGRMDEVRTLQENLRQLQDEYDQQQ 48 (51)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHh
Confidence 34566788899999999999999999999999888877664
No 17
>1z0k_B FYVE-finger-containing RAB5 effector protein rabenosyn-5; RAB gtpases, effector complex, vesicular trafficking, protein transport; HET: GTP MES; 1.92A {Homo sapiens} SCOP: a.2.19.1
Probab=58.41 E-value=40 Score=22.91 Aligned_cols=42 Identities=10% Similarity=0.219 Sum_probs=35.3
Q ss_pred hHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHHHHH
Q 028108 23 IQREEKNVQKSIKESAKRNDMGSAKALAKEILMSRKAVNRLY 64 (213)
Q Consensus 23 l~~eEkkl~~~IKkaakkg~~~~arilAkelvr~Rk~~~~l~ 64 (213)
|..+..-++.-|+.|.+.|..+.+.+|..+|=.....+.++-
T Consensus 25 L~EQ~~~I~~yI~qAk~~~r~DEV~tLe~NLrEL~~ei~~~q 66 (69)
T 1z0k_B 25 LLQQIHNITSFIRQAKAAGRMDEVRTLQENLRQLQDEYDQQQ 66 (69)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHh
Confidence 344566788899999999999999999999999888877653
No 18
>3v1a_A Computational design, MID1-APO1; helix-turn-helix, metal binding, homodimer, de novo protein, binding protein; 0.98A {Artificial gene} PDB: 3v1b_A* 3v1c_A* 3v1d_A* 3v1f_A* 3v1e_A
Probab=52.04 E-value=42 Score=21.19 Aligned_cols=40 Identities=13% Similarity=0.216 Sum_probs=33.4
Q ss_pred hHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHHH
Q 028108 23 IQREEKNVQKSIKESAKRNDMGSAKALAKEILMSRKAVNR 62 (213)
Q Consensus 23 l~~eEkkl~~~IKkaakkg~~~~arilAkelvr~Rk~~~~ 62 (213)
|..+..-++.-|+.|-+.+..+.+.+|-++|=.....+.+
T Consensus 6 L~EQ~~~I~~~I~qAk~~rRfdEV~~L~~NL~EL~~E~~~ 45 (48)
T 3v1a_A 6 LAQQIKNIHSFIHQAKAAGRMDEVRTLQENLHQLMHEYFQ 45 (48)
T ss_dssp HHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHh
Confidence 3445566788899999999999999999999888877765
No 19
>1gp8_A Protein (scaffolding protein); coat protein-binding domain, helix- loop-helix motif, viral protein; NMR {Enterobacteria phage P22} SCOP: j.58.1.1 PDB: 2gp8_A
Probab=50.90 E-value=10 Score=23.08 Aligned_cols=27 Identities=15% Similarity=0.324 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHcCChhhHHHHHHHHHH
Q 028108 29 NVQKSIKESAKRNDMGSAKALAKEILM 55 (213)
Q Consensus 29 kl~~~IKkaakkg~~~~arilAkelvr 55 (213)
.++++|--|...||.+++|.|=.+|-+
T Consensus 12 aiEQqiyvA~seGd~etv~~Le~QL~~ 38 (40)
T 1gp8_A 12 AIRKQMDAAASKGDVETYRKLKAKLKG 38 (40)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 466778889999999999999887743
No 20
>2r6a_C DNAG primase, helicase binding domain, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_G 1z8s_A*
Probab=44.71 E-value=52 Score=23.71 Aligned_cols=37 Identities=24% Similarity=0.268 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHH
Q 028108 24 QREEKNVQKSIKESAKRNDMGSAKALAKEILMSRKAV 60 (213)
Q Consensus 24 ~~eEkkl~~~IKkaakkg~~~~arilAkelvr~Rk~~ 60 (213)
.|+-.++..+|..+...||.+.+.-++.++++.++..
T Consensus 104 ~r~l~~~~~~i~~~~~~~d~~~~l~~~~el~~l~~~l 140 (143)
T 2r6a_C 104 WLMLKVKEQEKTEAERRKDFLTAARIAKEMIEMKKML 140 (143)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhh
Confidence 3455667788888888999999999999998887654
No 21
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=41.11 E-value=92 Score=21.96 Aligned_cols=53 Identities=15% Similarity=0.221 Sum_probs=37.5
Q ss_pred HHHhHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028108 20 VLDIQREEKNVQKSIKESAKRNDMGSAKALAKEILMSRKAVNRLYENKAQLNS 72 (213)
Q Consensus 20 i~~l~~eEkkl~~~IKkaakkg~~~~arilAkelvr~Rk~~~~l~~~ka~L~s 72 (213)
.+.|+.+-+.|..+|...-.++-....-+|-..|-..|+++..+..-+++|..
T Consensus 25 VR~LEqqN~~Le~~i~~l~~~~~~~~~~~ye~~i~~Lr~~i~~~~~ek~~l~~ 77 (93)
T 3s4r_A 25 VRFLEQQNKILLAELEQLKGQGKSRLGDLYEEEMRELRRQVDQLTNDKARVEV 77 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777788888888877665554444456777788888888877777776653
No 22
>1z0j_B FYVE-finger-containing RAB5 effector protein RABE, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Homo sapiens} SCOP: a.2.19.1
Probab=35.54 E-value=94 Score=20.42 Aligned_cols=39 Identities=8% Similarity=0.214 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHHHH
Q 028108 25 REEKNVQKSIKESAKRNDMGSAKALAKEILMSRKAVNRL 63 (213)
Q Consensus 25 ~eEkkl~~~IKkaakkg~~~~arilAkelvr~Rk~~~~l 63 (213)
.+-.-++.-|+.|.+.|..+.+-+|..+|=.....+.++
T Consensus 16 EQi~~I~~yI~qAk~~~R~DEV~~Le~NLrEL~~ei~~~ 54 (59)
T 1z0j_B 16 QQIDNIKAYIFDAKQCGRLDEVEVLTENLRELKHTLAKQ 54 (59)
T ss_dssp HHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHH
Confidence 345567888999999999999999999998887766554
No 23
>2luh_B Vacuolar protein-sorting-associated protein 60; VTA1, VPS60, ESCRT, MVB, novel MIT recognition mode, protein transport, endocytosis; NMR {Saccharomyces cerevisiae}
Probab=27.27 E-value=48 Score=21.86 Aligned_cols=53 Identities=9% Similarity=0.142 Sum_probs=32.0
Q ss_pred CChHHHHHHHHHHHHHHHHhhhHHHHHhhhhhhccCCCChhHHHHHHHHHHHH
Q 028108 104 MKAPEVAVTMQEFSKEMTKAGIIEEMVNDTIDTALDSDDIEEETEEKVDKVLS 156 (213)
Q Consensus 104 m~l~~l~~~M~~f~ke~~~~~~~~emm~d~~d~~~~~~~~eee~d~~v~kVld 156 (213)
+|+.+|...+.++.--++..+=++|.++-+..--..++-++++-+++++-.-+
T Consensus 1 inIDkIedlqDem~Dl~e~~nEIQE~L~rsy~~pe~DdiDE~eL~aELdaL~d 53 (59)
T 2luh_B 1 INIDKLQDMQDEMLDLIEQGDELQEVLAMNNNSGELDDISDAELDAELDALAQ 53 (59)
T ss_dssp CHHHHHHSCSSCHHHHHHHHHHHHHHHHHHHTTCCGGGTTHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccccCCHHHHHHHHHHhhc
Confidence 35667777777777777777778888887754221112234555666554443
No 24
>2l16_A SEC-independent protein translocase protein tatad; membrane protein, protein transport; NMR {Bacillus subtilis}
Probab=25.10 E-value=32 Score=23.81 Aligned_cols=39 Identities=15% Similarity=0.133 Sum_probs=23.3
Q ss_pred chhhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC
Q 028108 2 IFYAKKIHTGLLLLLLCCVLDIQREEKNVQKSIKESAKRN 41 (213)
Q Consensus 2 ~~~~~~~~~~~~r~l~R~i~~l~~eEkkl~~~IKkaakkg 41 (213)
+||.+|++ +..|.+-+.++...+.-+..+.++....+..
T Consensus 20 vfGpkkLP-~l~r~lGk~ir~fK~~~~~~~~e~~~~~~~~ 58 (78)
T 2l16_A 20 IFGPSKLP-EIGRAAGRTLLEFKSATKSLVSGDEKEEKSA 58 (78)
T ss_dssp HSCTTTHH-HHHHHHHHHHHHHHHHHHHHHHCCC------
T ss_pred eeCccHhH-HHHHHHHHHHHHHHHHHHHhHhhhhHHhhHH
Confidence 68999887 4677777777777766665555554444333
No 25
>4abm_A Charged multivesicular BODY protein 4B; cell cycle, protein transport, HIV-1; 1.80A {Homo sapiens}
Probab=24.02 E-value=1.8e+02 Score=19.90 Aligned_cols=64 Identities=17% Similarity=0.196 Sum_probs=34.0
Q ss_pred hHHHHHHHHHHHHhHHHHHHHHHHH-------HHHHHcCChhhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Q 028108 10 TGLLLLLLCCVLDIQREEKNVQKSI-------KESAKRNDMGSAKALAKEILMSRKAVNR-LYENKAQLNSISMHLG 78 (213)
Q Consensus 10 ~~~~r~l~R~i~~l~~eEkkl~~~I-------Kkaakkg~~~~arilAkelvr~Rk~~~~-l~~~ka~L~sV~~~lq 78 (213)
.+.|-.|.-++..|++.++.+...| |+.. .+| +--|..+.|.+|+... +-....++..+..++.
T Consensus 5 ~~AI~~Lr~~~d~L~kkq~~L~~~i~~e~~~Ak~~~-~kn----K~~Al~aLkrKK~~E~qL~q~~~ql~~LE~q~~ 76 (79)
T 4abm_A 5 QEAIQRLRDTEEMLSKKQEFLEKKIEQELTAAKKHG-TKN----KRAALQALKRKKRYEKQLAQIDGTLSTIEFQRE 76 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TSC----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcC----HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555554443333 3333 333 4478888887776554 4445555555555443
No 26
>3sjq_C Small conductance calcium-activated potassium CHA protein 2; protein-protein complex, EF hand, calmodulin, calcium bindin binding protein; HET: PHU; 1.90A {Rattus norvegicus}
Probab=23.08 E-value=1.6e+02 Score=20.72 Aligned_cols=48 Identities=19% Similarity=0.162 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHcCChhhHHHHH-------HHHHHHHHHHHHHHHHHHH---HHHHHHH
Q 028108 29 NVQKSIKESAKRNDMGSAKALA-------KEILMSRKAVNRLYENKAQ---LNSISMH 76 (213)
Q Consensus 29 kl~~~IKkaakkg~~~~arilA-------kelvr~Rk~~~~l~~~ka~---L~sV~~~ 76 (213)
++-+++|.+|..+-.++=.+|= .+-.|.|+...+|+.+-.+ |-+|.+.
T Consensus 4 qltKrvK~AAAnVLrEtWliyK~t~L~~k~~~~r~R~HQRk~L~AI~~~~~lR~vk~e 61 (87)
T 3sjq_C 4 QLTKRVKNAAANVLRETWLIYKNTKLVKKIDHAKVRKHQRKFLQAIHQARKLRSVKME 61 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHhhhcccCCcHHHHHHHhHHHHHHHHhhhHHHHHHHH
Confidence 4556777777766665544443 2346677777888888888 7777653
No 27
>1x4t_A Hypothetical protein LOC57905; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.2.15.1
Probab=22.44 E-value=1.2e+02 Score=21.67 Aligned_cols=28 Identities=21% Similarity=0.017 Sum_probs=23.9
Q ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 028108 10 TGLLLLLLCCVLDIQREEKNVQKSIKES 37 (213)
Q Consensus 10 ~~~~r~l~R~i~~l~~eEkkl~~~IKka 37 (213)
.-+||.|+-+|++|=++...=+..|+.+
T Consensus 51 E~~IRdLNDEINkL~rEK~~WE~rI~eL 78 (92)
T 1x4t_A 51 EFRIRDLNDEINKLLREKGHWEVRIKEL 78 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3578999999999999999988888754
No 28
>4g3b_A Alpha4F3D; alpha helix, de novo designed, fluorinated protein, coiled-C NOVO protein; HET: 6FL; 1.19A {Synthetic} PDB: 4g4l_A* 3twg_A*
Probab=20.70 E-value=62 Score=17.34 Aligned_cols=13 Identities=54% Similarity=0.808 Sum_probs=9.5
Q ss_pred hHHHHHHHHHhhh
Q 028108 200 ELEELRARLDKVR 212 (213)
Q Consensus 200 ~~d~L~~RL~aLr 212 (213)
+++|.|+||...|
T Consensus 9 eled~qerlrk~r 21 (26)
T 4g3b_A 9 ELEDXQERLRKXR 21 (26)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4678888887654
Done!