Query 028108
Match_columns 213
No_of_seqs 117 out of 621
Neff 6.4
Searched_HMMs 13730
Date Mon Mar 25 10:05:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028108.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/028108hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d256ba_ a.24.3.1 (A:) Cytochro 49.6 11 0.00081 25.7 4.6 34 31-64 72-105 (106)
2 d2azeb1 e.63.1.2 (B:201-301) T 43.8 14 0.00099 25.2 4.2 29 11-39 1-29 (101)
3 d1ng6a_ a.182.1.1 (A:) Hypothe 23.5 1.1E+02 0.0084 21.4 11.2 18 144-161 97-114 (148)
4 d2jdig1 c.49.2.1 (G:1-272) ATP 20.8 37 0.0027 25.8 3.7 26 69-94 2-27 (272)
5 d1x4ta1 a.2.15.1 (A:7-86) Pre- 18.0 83 0.0061 20.2 4.3 28 10-37 45-72 (80)
6 d1fxka_ a.2.5.1 (A:) Prefoldin 15.4 58 0.0042 21.4 3.2 27 9-35 77-103 (107)
7 d1u9pa1 a.43.1.1 (A:72-107) Ar 14.3 49 0.0036 17.7 2.0 21 146-166 2-22 (36)
8 d1g4yb_ f.15.1.1 (B:) Small-co 13.9 66 0.0048 20.8 2.9 23 54-76 35-57 (82)
9 d1g99a2 c.55.1.2 (A:198-398) A 11.4 1.9E+02 0.014 21.4 5.5 33 32-64 88-120 (201)
10 d2dkla1 a.5.2.1 (A:8-79) Trinu 11.4 80 0.0058 19.9 2.6 24 112-135 13-36 (72)
No 1
>d256ba_ a.24.3.1 (A:) Cytochrome b562 {Escherichia coli [TaxId: 562]}
Probab=49.56 E-value=11 Score=25.65 Aligned_cols=34 Identities=21% Similarity=0.273 Sum_probs=29.7
Q ss_pred HHHHHHHHHcCChhhHHHHHHHHHHHHHHHHHHH
Q 028108 31 QKSIKESAKRNDMGSAKALAKEILMSRKAVNRLY 64 (213)
Q Consensus 31 ~~~IKkaakkg~~~~arilAkelvr~Rk~~~~l~ 64 (213)
...|..++..|+.+.|+.+..+|-..|+..=+.|
T Consensus 72 ld~i~~la~~G~l~eAk~~l~~l~~~r~~YHkk~ 105 (106)
T d256ba_ 72 IDDALKLANEGKVKEAQAAAEQLKTTRNAYHQKY 105 (106)
T ss_dssp HHHHHHHHHTTCHHHHHHHHTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhhc
Confidence 4568899999999999999999999999876654
No 2
>d2azeb1 e.63.1.2 (B:201-301) Transcription factor E2F1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=43.84 E-value=14 Score=25.18 Aligned_cols=29 Identities=17% Similarity=0.155 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 028108 11 GLLLLLLCCVLDIQREEKNVQKSIKESAK 39 (213)
Q Consensus 11 ~~~r~l~R~i~~l~~eEkkl~~~IKkaak 39 (213)
|++..|..++.+|+.+|+.|-..|+.+.+
T Consensus 1 ~r~~~L~~El~~L~~~E~~LD~li~~~~~ 29 (101)
T d2azeb1 1 GRLEGLTQDLRQLQESEQQLDHLMNICTT 29 (101)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788999999999999999988887664
No 3
>d1ng6a_ a.182.1.1 (A:) Hypothetical protein YqeY {Bacillus subtilis [TaxId: 1423]}
Probab=23.52 E-value=1.1e+02 Score=21.36 Aligned_cols=18 Identities=28% Similarity=0.488 Sum_probs=15.6
Q ss_pred hHHHHHHHHHHHHHHcch
Q 028108 144 EEETEEKVDKVLSEIAGE 161 (213)
Q Consensus 144 eee~d~~v~kVldE~g~~ 161 (213)
++|++.+|.+++.|+|..
T Consensus 97 eeEl~~~v~~~i~e~~a~ 114 (148)
T d1ng6a_ 97 EEELRTIVNETIAEVGAS 114 (148)
T ss_dssp HHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHhCCC
Confidence 578999999999998753
No 4
>d2jdig1 c.49.2.1 (G:1-272) ATP synthase (F1-ATPase), gamma subunit {Cow (Bos taurus) [TaxId: 9913]}
Probab=20.77 E-value=37 Score=25.78 Aligned_cols=26 Identities=15% Similarity=0.190 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028108 69 QLNSISMHLGESVAIARTVGHLSKST 94 (213)
Q Consensus 69 ~L~sV~~~lqt~~s~~~~~~sm~~s~ 94 (213)
.|..|..|+.+..++.+++++|+-++
T Consensus 2 ~Lkeik~RI~Sv~~t~kITkAMkmVA 27 (272)
T d2jdig1 2 TLKDITRRLKSIKNIQKITKSMKMVA 27 (272)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677778888888888888877663
No 5
>d1x4ta1 a.2.15.1 (A:7-86) Pre-mRNA-splicing factor ISY1 homolog {Mouse (Mus musculus) [TaxId: 10090]}
Probab=18.03 E-value=83 Score=20.23 Aligned_cols=28 Identities=21% Similarity=0.017 Sum_probs=24.1
Q ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 028108 10 TGLLLLLLCCVLDIQREEKNVQKSIKES 37 (213)
Q Consensus 10 ~~~~r~l~R~i~~l~~eEkkl~~~IKka 37 (213)
.-+||.|+-+|++|=++...=+..|+.+
T Consensus 45 e~~IRdLNDeINkL~reK~~WE~rI~eL 72 (80)
T d1x4ta1 45 EFRIRDLNDEINKLLREKGHWEVRIKEL 72 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3578999999999999999988888764
No 6
>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=15.40 E-value=58 Score=21.45 Aligned_cols=27 Identities=7% Similarity=-0.117 Sum_probs=11.6
Q ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHH
Q 028108 9 HTGLLLLLLCCVLDIQREEKNVQKSIK 35 (213)
Q Consensus 9 ~~~~~r~l~R~i~~l~~eEkkl~~~IK 35 (213)
....++.|++++..++.+=..+...|.
T Consensus 77 l~~~i~~l~~q~~~l~~~l~~~~~~l~ 103 (107)
T d1fxka_ 77 LQLREKTIERQEERVMKKLQEMQVNIQ 103 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444443
No 7
>d1u9pa1 a.43.1.1 (A:72-107) Arc repressor {Salmonella bacteriophage P22 [TaxId: 10754]}
Probab=14.30 E-value=49 Score=17.75 Aligned_cols=21 Identities=24% Similarity=0.254 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHcchhhhcC
Q 028108 146 ETEEKVDKVLSEIAGETAAQL 166 (213)
Q Consensus 146 e~d~~v~kVldE~g~~~~~~l 166 (213)
|+=.+|.+|+.|.|-.++..+
T Consensus 2 evldlvrkvaeeng~s~ns~i 22 (36)
T d1u9pa1 2 EVLDLVRKVAEENGRSVNSEI 22 (36)
T ss_dssp HHHHHHHHHHHHHTCCHHHHH
T ss_pred cHHHHHHHHHHHcCcchhHHH
Confidence 455789999999998776554
No 8
>d1g4yb_ f.15.1.1 (B:) Small-conductance potassium channel {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=13.92 E-value=66 Score=20.79 Aligned_cols=23 Identities=26% Similarity=0.329 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 028108 54 LMSRKAVNRLYENKAQLNSISMH 76 (213)
Q Consensus 54 vr~Rk~~~~l~~~ka~L~sV~~~ 76 (213)
-+.|+.-.+|+.+--++-.|.+.
T Consensus 35 ~~~R~HQRkfL~AIh~~R~vk~~ 57 (82)
T d1g4yb_ 35 AKVRKHQRKFLQAIHQLRSVKME 57 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777888887777777664
No 9
>d1g99a2 c.55.1.2 (A:198-398) Acetate kinase {Archaeon Methanosarcina thermophila [TaxId: 2210]}
Probab=11.44 E-value=1.9e+02 Score=21.37 Aligned_cols=33 Identities=15% Similarity=0.184 Sum_probs=24.3
Q ss_pred HHHHHHHHcCChhhHHHHHHHHHHHHHHHHHHH
Q 028108 32 KSIKESAKRNDMGSAKALAKEILMSRKAVNRLY 64 (213)
Q Consensus 32 ~~IKkaakkg~~~~arilAkelvr~Rk~~~~l~ 64 (213)
.+|.++++.||..+.-.+.--+-|++|++-.|.
T Consensus 88 R~v~~~~~~Gd~~A~la~d~~~yri~k~Iga~~ 120 (201)
T d1g99a2 88 RDLDEAASKGNRKAELALEIFAYKVKKFIGEYS 120 (201)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 457778888998877777777777777766554
No 10
>d2dkla1 a.5.2.1 (A:8-79) Trinucleotide repeat containing 6c protein, TNRC6C {Human (Homo sapiens) [TaxId: 9606]}
Probab=11.39 E-value=80 Score=19.87 Aligned_cols=24 Identities=21% Similarity=0.400 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHhhhHHHHHhhhhh
Q 028108 112 TMQEFSKEMTKAGIIEEMVNDTID 135 (213)
Q Consensus 112 ~M~~f~ke~~~~~~~~emm~d~~d 135 (213)
+|.-|-+||.+||+..+--++++-
T Consensus 13 iMnp~~KQfsnMGf~re~~e~~l~ 36 (72)
T d2dkla1 13 IMSRLIKQLTDMGFPREPAEEALK 36 (72)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHH
T ss_pred hhhHHHHHHhhcCCcCCChHHhhh
Confidence 689999999999999988888874
Done!