Query 028109
Match_columns 213
No_of_seqs 142 out of 187
Neff 4.1
Searched_HMMs 29240
Date Mon Mar 25 10:07:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028109.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028109hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2d8u_A Ubiquitin ligase TRIM63 95.5 0.0061 2.1E-07 41.4 2.0 36 25-64 10-47 (64)
2 3ddt_A E3 ubiquitin-protein li 95.3 0.0071 2.4E-07 39.2 1.8 39 23-65 6-46 (48)
3 2yvr_A Transcription intermedi 95.2 0.0061 2.1E-07 39.7 1.3 36 25-64 8-44 (50)
4 1fre_A Nuclear factor XNF7; zi 94.5 0.02 6.8E-07 35.9 2.3 35 25-64 5-41 (42)
5 2did_A Tripartite motif protei 94.2 0.024 8E-07 37.3 2.2 36 25-65 10-47 (53)
6 2yrg_A Tripartite motif-contai 92.7 0.055 1.9E-06 36.7 2.2 36 25-65 16-53 (59)
7 2csv_A Tripartite motif protei 92.7 0.043 1.5E-06 38.2 1.7 35 25-64 20-55 (72)
8 2dja_A Midline-2; tripartite m 92.5 0.038 1.3E-06 39.3 1.1 39 25-67 20-60 (84)
9 2egm_A Tripartite motif-contai 91.7 0.032 1.1E-06 37.7 -0.0 35 25-64 20-56 (57)
10 2jun_A Midline-1; B-BOX, TRIM, 90.3 0.082 2.8E-06 38.4 1.1 37 24-64 60-98 (101)
11 2w0t_A Lethal(3)malignant brai 88.5 0.092 3.2E-06 35.0 0.1 25 112-136 4-34 (43)
12 2das_A Zinc finger MYM-type pr 83.4 0.72 2.4E-05 32.8 2.6 30 107-136 13-52 (62)
13 2l8e_A Polyhomeotic-like prote 69.0 0.65 2.2E-05 31.3 -0.9 23 114-136 18-45 (49)
14 1lv3_A Hypothetical protein YA 53.3 2.2 7.4E-05 30.7 -0.6 25 114-138 9-38 (68)
15 3ny3_A E3 ubiquitin-protein li 41.5 15 0.00053 26.3 2.4 30 33-62 12-46 (75)
16 3nis_A E3 ubiquitin-protein li 39.6 17 0.00058 26.6 2.4 30 33-62 16-50 (82)
17 2jun_A Midline-1; B-BOX, TRIM, 39.2 13 0.00043 26.5 1.6 26 34-60 14-40 (101)
18 2yqp_A Probable ATP-dependent 35.7 18 0.00062 25.4 1.9 23 114-136 19-46 (60)
19 1tot_A CREB-binding protein; z 35.4 14 0.00049 24.5 1.3 28 38-66 19-48 (52)
20 2hiy_A Hypothetical protein; C 34.7 13 0.00045 30.4 1.2 32 72-104 20-54 (183)
21 2yqq_A Zinc finger HIT domain- 31.8 15 0.00051 25.3 1.0 22 114-136 12-39 (56)
22 2nrr_A Uvrabc system protein C 28.5 9.9 0.00034 31.2 -0.5 27 81-107 21-47 (159)
23 2dip_A Zinc finger SWIM domain 27.7 12 0.00041 28.1 -0.1 29 39-67 47-77 (98)
24 2fc7_A ZZZ3 protein; structure 26.4 29 0.00098 25.1 1.7 30 39-68 37-76 (82)
25 1x4s_A Protein FON, zinc finge 23.6 17 0.00058 25.4 0.0 22 115-136 12-42 (59)
26 2nrt_A Uvrabc system protein C 21.5 15 0.00051 31.4 -0.7 27 81-107 26-52 (220)
No 1
>2d8u_A Ubiquitin ligase TRIM63; tripartite motif-containing 63, muscle-specific ring finger protein 1, MURF1, ring finger protein 28; NMR {Homo sapiens} SCOP: g.43.1.1
Probab=95.47 E-value=0.0061 Score=41.37 Aligned_cols=36 Identities=39% Similarity=0.784 Sum_probs=28.9
Q ss_pred cCCCCCCCCCCCcceecccCCCCcCCccccc--ccCCCceeE
Q 028109 25 QCKLHPDSHKSECNMYCLDCMNGAFCSLCLD--YHKDHRAIQ 64 (213)
Q Consensus 25 ~C~~H~~~~knE~N~FCldC~~~~lC~~Cl~--~H~~Hr~lQ 64 (213)
.|..|... ..++||.+|. ..+|..|.. .|++|+++-
T Consensus 10 ~C~~H~~e---~l~lfC~~d~-~~iC~~C~~~~~H~~H~~~~ 47 (64)
T 2d8u_A 10 MCKEHEDE---KINIYCLTCE-VPTCSMCKVFGIHKACEVAP 47 (64)
T ss_dssp CCSSCTTC---CCCSEESSSC-CCCCSHHHHSSSTTSSCEEC
T ss_pred cCcCcCCC---ccceEcCcCC-ceeCccccCCCcCCCCCeeC
Confidence 59999652 4789999998 899999963 899987654
No 2
>3ddt_A E3 ubiquitin-protein ligase TRIM63; zinc-binding motif, ring-like fold, coiled coil, cytoplasm, metal-binding, muscle protein, nucleus; 1.90A {Homo sapiens} SCOP: g.43.1.1 PDB: 3q1d_A
Probab=95.29 E-value=0.0071 Score=39.22 Aligned_cols=39 Identities=36% Similarity=0.718 Sum_probs=30.9
Q ss_pred cccCCCCCCCCCCCcceecccCCCCcCCcccc-c-ccCCCceeEE
Q 028109 23 FVQCKLHPDSHKSECNMYCLDCMNGAFCSLCL-D-YHKDHRAIQI 65 (213)
Q Consensus 23 F~~C~~H~~~~knE~N~FCldC~~~~lC~~Cl-~-~H~~Hr~lQI 65 (213)
...|..|... ..++||.+|. ..+|..|. . .|++|+++.|
T Consensus 6 ~~~C~~H~~e---~l~lfC~~d~-~~iC~~C~~~~~H~~H~~~~l 46 (48)
T 3ddt_A 6 HPMCKEHEDE---KINIYCLTCE-VPTCSMCKVFGIHKACEVAPL 46 (48)
T ss_dssp SCBCSSSTTS---BCCEEETTTT-EEECHHHHHHSTTTTSCEEEC
T ss_pred CCcCCCCCCc---cccEEcCCCC-eeEcccccCCCcCCCCcEEeC
Confidence 3569999742 3779999997 89999996 3 8999987654
No 3
>2yvr_A Transcription intermediary factor 1-beta; ZF-B_BOX domain, structural genomics, NPPSFA; 1.80A {Homo sapiens}
Probab=95.19 E-value=0.0061 Score=39.68 Aligned_cols=36 Identities=28% Similarity=0.565 Sum_probs=28.5
Q ss_pred cCCCCCCCCCCCcceecccCCCCcCCccccc-ccCCCceeE
Q 028109 25 QCKLHPDSHKSECNMYCLDCMNGAFCSLCLD-YHKDHRAIQ 64 (213)
Q Consensus 25 ~C~~H~~~~knE~N~FCldC~~~~lC~~Cl~-~H~~Hr~lQ 64 (213)
.|..|... ..++||.+|. ..+|..|.. .|++|+++-
T Consensus 8 ~C~~H~~e---~l~lfC~~~~-~~iC~~C~~~~H~~H~~~~ 44 (50)
T 2yvr_A 8 YCNVHKHE---PLVLFCESCD-TLTCRDCQLNAHKDHQYQF 44 (50)
T ss_dssp BCSSSTTC---BCCEEETTTT-EEECHHHHHTTTTTCCEEE
T ss_pred cCcCCCCC---CEEEEeCCCC-EEEecccCCCcCCCCceec
Confidence 49999542 4789999998 889999955 788887654
No 4
>1fre_A Nuclear factor XNF7; zinc-binding protein, BBOX, development, MID-blastula- transition; NMR {Xenopus laevis} SCOP: g.43.1.1
Probab=94.51 E-value=0.02 Score=35.91 Aligned_cols=35 Identities=29% Similarity=0.655 Sum_probs=28.5
Q ss_pred cCCCCCCCCCCCcceecccCCCCcCCccccc--ccCCCceeE
Q 028109 25 QCKLHPDSHKSECNMYCLDCMNGAFCSLCLD--YHKDHRAIQ 64 (213)
Q Consensus 25 ~C~~H~~~~knE~N~FCldC~~~~lC~~Cl~--~H~~Hr~lQ 64 (213)
.|..|.. ...+||.+|. ..+|..|.. .|++|+++.
T Consensus 5 ~C~~H~e----~l~lfC~~d~-~~iC~~C~~~~~H~~H~~~~ 41 (42)
T 1fre_A 5 KCSEHDE----RLKLYCKDDG-TLSCVICRDSLKHASHNFLP 41 (42)
T ss_dssp CCCSSCS----SCCCCCCSSS-SSSCCTTSSCSSCTTCCCCC
T ss_pred cchhhCC----eeeEEeCCCC-eEEeccCCCCCCCCCCcEec
Confidence 5888852 5789999997 889999965 799998753
No 5
>2did_A Tripartite motif protein 39; ZF-B-box domian, Zn binding, one sequence two fold, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dif_A
Probab=94.16 E-value=0.024 Score=37.35 Aligned_cols=36 Identities=22% Similarity=0.659 Sum_probs=29.4
Q ss_pred cCCCCCCCCCCCcceecccCCCCcCCccccc--ccCCCceeEE
Q 028109 25 QCKLHPDSHKSECNMYCLDCMNGAFCSLCLD--YHKDHRAIQI 65 (213)
Q Consensus 25 ~C~~H~~~~knE~N~FCldC~~~~lC~~Cl~--~H~~Hr~lQI 65 (213)
.|..|.. ...+||.+|. ..+|..|.. .|++|+++-|
T Consensus 10 ~C~~H~e----~l~lfC~~d~-~~iC~~C~~~~~H~~H~~~~l 47 (53)
T 2did_A 10 LCPQHHE----ALSLFCYEDQ-EAVCLICAISHTHRAHTVVPL 47 (53)
T ss_dssp BCTTTCC----BCCEEESSSC-SEECHHHHTSSTTTTSCEEEC
T ss_pred cChhhCC----eeeEEeCCCC-eEEeccccCCCCCCCCcEeeH
Confidence 5999962 5789999998 889999964 8999987654
No 6
>2yrg_A Tripartite motif-containing protein 5; B-box domain, ring finger protein 88, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=92.71 E-value=0.055 Score=36.74 Aligned_cols=36 Identities=22% Similarity=0.573 Sum_probs=29.8
Q ss_pred cCCCCCCCCCCCcceecccCCCCcCCccccc--ccCCCceeEE
Q 028109 25 QCKLHPDSHKSECNMYCLDCMNGAFCSLCLD--YHKDHRAIQI 65 (213)
Q Consensus 25 ~C~~H~~~~knE~N~FCldC~~~~lC~~Cl~--~H~~Hr~lQI 65 (213)
.|..|.. ...+||.+|. ..+|..|.. .|++|+++.|
T Consensus 16 ~C~~H~e----~L~lfC~~d~-~~iC~~C~~s~eH~~H~~~~l 53 (59)
T 2yrg_A 16 HCARHGE----KLLLFCQEDG-KVICWLCERSQEHRGHHTFPT 53 (59)
T ss_dssp BCTTTCC----BCCEEETTTC-SEECHHHHTSTTTTTCCEEEC
T ss_pred cChhhCc----eeeeecCCCC-cEEecccCCCCcCCCCcEeeH
Confidence 5999963 5779999997 889999964 8999987765
No 7
>2csv_A Tripartite motif protein 29; ZF-B_BOX domain, TRIM29, ataxia-telangiectasia group D-associated protein, ATDC, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1
Probab=92.70 E-value=0.043 Score=38.24 Aligned_cols=35 Identities=26% Similarity=0.707 Sum_probs=28.0
Q ss_pred cCCCCCCCCCCCcceecccCCCCcCCccccc-ccCCCceeE
Q 028109 25 QCKLHPDSHKSECNMYCLDCMNGAFCSLCLD-YHKDHRAIQ 64 (213)
Q Consensus 25 ~C~~H~~~~knE~N~FCldC~~~~lC~~Cl~-~H~~Hr~lQ 64 (213)
.|..|. ...++||.+|. ..+|..|.. .|++|+++-
T Consensus 20 ~C~~H~----e~l~lfC~~d~-~~iC~~C~~~~H~~H~~~~ 55 (72)
T 2csv_A 20 KCPVHG----KTMELFCQTDQ-TCICYLCMFQEHKNHSTVT 55 (72)
T ss_dssp BCTTTC----CBCCEEESSSC-CEECHHHHHTTTSSSCEEE
T ss_pred cCcccC----CceEEEeCCCC-eEEccccCCCCCCCCCEec
Confidence 699994 25789999998 889999965 788887554
No 8
>2dja_A Midline-2; tripartite motif protein 1, ZF-B_BOX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dq5_A
Probab=92.47 E-value=0.038 Score=39.28 Aligned_cols=39 Identities=31% Similarity=0.686 Sum_probs=30.5
Q ss_pred cCCCCCCCCCCCcceecccCCCCcCCccccc--ccCCCceeEEEe
Q 028109 25 QCKLHPDSHKSECNMYCLDCMNGAFCSLCLD--YHKDHRAIQIRR 67 (213)
Q Consensus 25 ~C~~H~~~~knE~N~FCldC~~~~lC~~Cl~--~H~~Hr~lQIRR 67 (213)
.|..|... ..++||.+|. ..+|..|.. .|++|+++-|--
T Consensus 20 ~C~~H~~e---~l~lfC~~d~-~~iC~~C~~~~~H~~H~~~~l~e 60 (84)
T 2dja_A 20 TCLDHENE---KVNMYCVSDD-QLICALCKLVGRHRDHQVASLND 60 (84)
T ss_dssp CCSSCSSS---CCCEEETTTT-EEECHHHHHTSTTTTCCBCCCCS
T ss_pred cCcCcCCc---cccEEcCCCC-ceEcccCcCCCCCCCCCccCHHH
Confidence 59999542 3789999997 889999964 899998765443
No 9
>2egm_A Tripartite motif-containing protein 41; ZF-B_BOX domain, tripartite motif protein 41, TRIM41, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=91.69 E-value=0.032 Score=37.74 Aligned_cols=35 Identities=26% Similarity=0.639 Sum_probs=28.8
Q ss_pred cCCCCCCCCCCCcceecccCCCCcCCccccc--ccCCCceeE
Q 028109 25 QCKLHPDSHKSECNMYCLDCMNGAFCSLCLD--YHKDHRAIQ 64 (213)
Q Consensus 25 ~C~~H~~~~knE~N~FCldC~~~~lC~~Cl~--~H~~Hr~lQ 64 (213)
.|..|.. ...+||.+|. ..+|..|.. .|++|+++.
T Consensus 20 ~C~~H~e----~L~lfC~~d~-~~iC~~C~~~~eH~~H~~~~ 56 (57)
T 2egm_A 20 ICPKHQE----ALKLFCEVDE-EAICVVCRESRSHKQHSVVP 56 (57)
T ss_dssp BCTTTCC----BCCEEETTTT-EEECHHHHHSHHHHSSCEEC
T ss_pred cChhhCc----eeeEEcCCCC-cEEecccCCCCCCCCCcEec
Confidence 5999942 5789999997 889999964 799998764
No 10
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=90.33 E-value=0.082 Score=38.37 Aligned_cols=37 Identities=35% Similarity=0.730 Sum_probs=29.5
Q ss_pred ccCCCCCCCCCCCcceecccCCCCcCCccccc--ccCCCceeE
Q 028109 24 VQCKLHPDSHKSECNMYCLDCMNGAFCSLCLD--YHKDHRAIQ 64 (213)
Q Consensus 24 ~~C~~H~~~~knE~N~FCldC~~~~lC~~Cl~--~H~~Hr~lQ 64 (213)
..|..|... ..++||.+|. ..+|..|.. .|++|+++-
T Consensus 60 ~~C~~H~~e---~l~~fC~~~~-~~iC~~C~~~~~H~~H~~~~ 98 (101)
T 2jun_A 60 LMCLEHEDE---KVNMYCVTDD-QLICALCKLVGRHRDHQVAA 98 (101)
T ss_dssp CCCSSCSSS---CCCEEETTTT-EEECHHHHHHTTTSSSCBCC
T ss_pred CcCcCcCCC---cceEECCCCC-CccchhcCCCCCcCCCCeec
Confidence 369999642 3789999997 899999964 899998654
No 11
>2w0t_A Lethal(3)malignant brain tumor-like 2 protein; zinc, YACG, LMBL2, nucleus, zinc-finger, RNA binding, MBT repeats, PCG proteins, polymorphism; NMR {Homo sapiens}
Probab=88.47 E-value=0.092 Score=34.96 Aligned_cols=25 Identities=32% Similarity=0.797 Sum_probs=18.5
Q ss_pred CCCCcccccccc-cCC-----CCeeeecccc
Q 028109 112 GVTNTCEVCDRS-LLD-----SFRFCSLGCK 136 (213)
Q Consensus 112 g~~~~C~~C~R~-L~d-----~~rFCSL~CK 136 (213)
+..-.||.|++. +.. +-||||++|-
T Consensus 4 ~~~~~CE~CG~~g~~~~F~~ksKRFCS~~Ca 34 (43)
T 2w0t_A 4 SEPAVCEMCGIVGTREAFFSKTKRFCSVSCS 34 (43)
T ss_dssp CCEEECTTTCCEEETTTSCTTTSSSSSHHHH
T ss_pred CceehhhhhcCcchhhhhccCCcceechhhh
Confidence 345689999984 443 3489999996
No 12
>2das_A Zinc finger MYM-type protein 5; trash domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.17
Probab=83.40 E-value=0.72 Score=32.84 Aligned_cols=30 Identities=30% Similarity=0.592 Sum_probs=24.4
Q ss_pred CCCCCCCCCcccccccccCC----------CCeeeecccc
Q 028109 107 PRPGKGVTNTCEVCDRSLLD----------SFRFCSLGCK 136 (213)
Q Consensus 107 ~r~~kg~~~~C~~C~R~L~d----------~~rFCSL~CK 136 (213)
.++.+...-+|+.|.+.|+. +-.|||..|-
T Consensus 13 q~~~~~~~v~C~~CKk~lqKGQtAyqrkGs~~LFCS~~CL 52 (62)
T 2das_A 13 QQLTKPAKITCANCKKPLQKGQTAYQRKGSAHLFCSTTCL 52 (62)
T ss_dssp CCCSSCSSCBCTTTCCBCCTTSCCEECTTCCCEESSHHHH
T ss_pred cCCCCccccChhhccchhhcCceeeeecCchhheechHHH
Confidence 45666678899999999983 4579999997
No 13
>2l8e_A Polyhomeotic-like protein 1; DNA binding protein; NMR {Homo sapiens}
Probab=68.98 E-value=0.65 Score=31.34 Aligned_cols=23 Identities=39% Similarity=0.804 Sum_probs=18.9
Q ss_pred CCcccccccccCC-----CCeeeecccc
Q 028109 114 TNTCEVCDRSLLD-----SFRFCSLGCK 136 (213)
Q Consensus 114 ~~~C~~C~R~L~d-----~~rFCSL~CK 136 (213)
..+|+.|++.+.. +-+|||..|.
T Consensus 18 ~~~C~~CG~~i~~~~~~r~krFCS~sCR 45 (49)
T 2l8e_A 18 LLKCEYCGKYAPAEQFRGSKRFCSMTCA 45 (49)
T ss_dssp EEECTTTCCEEEGGGCTTTSSSCSHHHH
T ss_pred CCcChhccCccccccCCCCCccCCHHHH
Confidence 3579999999874 3589999996
No 14
>1lv3_A Hypothetical protein YACG; zinc finger, rubredoxin knuckle, C4 tetrahedral Zn+2, antiparallel beta strand and alpha helix, NESG project; NMR {Escherichia coli} SCOP: g.39.1.9
Probab=53.28 E-value=2.2 Score=30.74 Aligned_cols=25 Identities=28% Similarity=0.755 Sum_probs=19.4
Q ss_pred CCcccccccccC----CC-Ceeeecccccc
Q 028109 114 TNTCEVCDRSLL----DS-FRFCSLGCKNF 138 (213)
Q Consensus 114 ~~~C~~C~R~L~----d~-~rFCSL~CK~~ 138 (213)
...|-+|++... -. ..|||-.||.+
T Consensus 9 ~~~CP~Cgkp~~W~~~~~~rPFCSeRCr~i 38 (68)
T 1lv3_A 9 TVNCPTCGKTVVWGEISPFRPFCSKRCQLI 38 (68)
T ss_dssp EEECTTTCCEEECSSSSSCCSSSSHHHHHH
T ss_pred cCcCCCCCCcccccccCCCCcccCHHHHhh
Confidence 457999999985 23 46999999933
No 15
>3ny3_A E3 ubiquitin-protein ligase UBR2; zinc finger-like, ubiquitin ligase, protein binding, lygase,; 1.60A {Homo sapiens} PDB: 3ny2_A 3ny1_A
Probab=41.50 E-value=15 Score=26.32 Aligned_cols=30 Identities=33% Similarity=0.678 Sum_probs=21.9
Q ss_pred CCCCcceecccCCCC---cCCccccc--ccCCCce
Q 028109 33 HKSECNMYCLDCMNG---AFCSLCLD--YHKDHRA 62 (213)
Q Consensus 33 ~knE~N~FCldC~~~---~lC~~Cl~--~H~~Hr~ 62 (213)
.++|--..|.+|... ++|..|-. .|.+|++
T Consensus 12 ~~ge~~Y~C~~C~~d~tc~lC~~CF~~~~H~gH~~ 46 (75)
T 3ny3_A 12 KVGEPTYSCRDCAVDPTCVLCMECFLGSIHRDHRY 46 (75)
T ss_dssp CTTCEEEEETTTBSSTTCCBCHHHHHTSGGGGSCE
T ss_pred cCCCEEEECccCCCCCCeeEChHHCCCCCcCCceE
Confidence 457888999999754 46666643 7888874
No 16
>3nis_A E3 ubiquitin-protein ligase UBR1; E3 ubiquitin ligase, UBR BOX, zinc-binding protein, N-END RU ligase, metal binding protein; 1.68A {Saccharomyces cerevisiae} PDB: 3nii_A 3nij_A 3nih_A 3nik_A 3nim_A 3nin_A 3nil_A 3nit_A
Probab=39.63 E-value=17 Score=26.61 Aligned_cols=30 Identities=23% Similarity=0.545 Sum_probs=21.6
Q ss_pred CCCCcceecccCCCC---cCCccccc--ccCCCce
Q 028109 33 HKSECNMYCLDCMNG---AFCSLCLD--YHKDHRA 62 (213)
Q Consensus 33 ~knE~N~FCldC~~~---~lC~~Cl~--~H~~Hr~ 62 (213)
.++|--..|.+|... +||..|-. .|.+|++
T Consensus 16 ~~ge~~Y~C~~C~~d~tcvlC~~CF~~s~H~gH~~ 50 (82)
T 3nis_A 16 KIGEPLYRCHECGCDDTCVLCIHCFNPKDHVNHHV 50 (82)
T ss_dssp CTTCEEEEETTTBSSTTCCBCTTTCCGGGGTTSCE
T ss_pred cCCCEEEEeeccCCCCCceEchhhCCCCCcCCceE
Confidence 456888999999754 46666644 7888864
No 17
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=39.16 E-value=13 Score=26.49 Aligned_cols=26 Identities=23% Similarity=0.698 Sum_probs=21.3
Q ss_pred CCCcceecccCCCCcCCcccccc-cCCC
Q 028109 34 KSECNMYCLDCMNGAFCSLCLDY-HKDH 60 (213)
Q Consensus 34 knE~N~FCldC~~~~lC~~Cl~~-H~~H 60 (213)
+.+...+|++|. ..||..|+.. |..-
T Consensus 14 ~~~av~~C~~C~-~~~C~~Cl~~~h~~~ 40 (101)
T 2jun_A 14 AQDAVKTCVTCE-VSYCDECLKATHPNK 40 (101)
T ss_dssp CCBCCEEETTTT-EEECHHHHHHHSCSC
T ss_pred CCCceEECCcCC-hHHhHHHCHHHhccC
Confidence 456779999998 8999999986 7643
No 18
>2yqp_A Probable ATP-dependent RNA helicase DDX59; structure genomics, ZF-HIT domain, DEAD box polypeptide 59 isoform 2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=35.69 E-value=18 Score=25.45 Aligned_cols=23 Identities=43% Similarity=0.743 Sum_probs=18.3
Q ss_pred CCcccccccccC---C--CCeeeecccc
Q 028109 114 TNTCEVCDRSLL---D--SFRFCSLGCK 136 (213)
Q Consensus 114 ~~~C~~C~R~L~---d--~~rFCSL~CK 136 (213)
.+.|-+|+|-=. | .-+-|||.||
T Consensus 19 ePvCvvCGryGeYICd~Td~DVCSlECK 46 (60)
T 2yqp_A 19 EPICVVCGRYGEYICDKTDEDVCSLECK 46 (60)
T ss_dssp SCCCSSSSSCCSEECSSSCCEESSHHHH
T ss_pred CceEEEecCccceeecCCCcchhhHHHH
Confidence 556999998543 4 5789999999
No 19
>1tot_A CREB-binding protein; zinc binding, CBP, TAZ2, transferase; NMR {Mus musculus} SCOP: g.44.1.6
Probab=35.39 E-value=14 Score=24.52 Aligned_cols=28 Identities=21% Similarity=0.573 Sum_probs=22.1
Q ss_pred ceecccCCCCcCCccccc--ccCCCceeEEE
Q 028109 38 NMYCLDCMNGAFCSLCLD--YHKDHRAIQIR 66 (213)
Q Consensus 38 N~FCldC~~~~lC~~Cl~--~H~~Hr~lQIR 66 (213)
-+-|..|.+--||..|.. .| .|..++|.
T Consensus 19 R~~C~~C~dyDLC~~C~~~~~H-~H~m~~~~ 48 (52)
T 1tot_A 19 RWHCTVCEDYDLCINCYNTKSH-THKMVKWG 48 (52)
T ss_dssp EEEESSSSSCEECHHHHHHHCC-CSSEEEEC
T ss_pred eEEcCCCCCchhHHHHHhCCCC-CCceEEec
Confidence 378999987789999965 45 78888774
No 20
>2hiy_A Hypothetical protein; COG3797, structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GOL; 1.40A {Streptococcus pneumoniae} SCOP: d.356.1.1
Probab=34.68 E-value=13 Score=30.36 Aligned_cols=32 Identities=25% Similarity=0.520 Sum_probs=24.4
Q ss_pred ceeeechhhhh---hcccceeeEEEcCeEEEEeeCC
Q 028109 72 DVIRVSEIQKV---LDISGVQTYVINSARVVFLNER 104 (213)
Q Consensus 72 dVVRv~dIqkl---~D~S~IQtYvINsakVVFLn~R 104 (213)
+-|...|+.++ +-..+|+|| |||.-|||--..
T Consensus 20 nkv~MadLr~~l~~lGf~~V~Ty-I~SGNvvF~s~~ 54 (183)
T 2hiy_A 20 NKVVMAELRQELTNLGLEKVESY-INSGNIFFTSID 54 (183)
T ss_dssp CCCCHHHHHHHHHHHTCEEEEEE-TTTTEEEEEECS
T ss_pred CcccHHHHHHHHHHcCCccceEE-EecCCEEEecCC
Confidence 44666777665 578899999 799999997543
No 21
>2yqq_A Zinc finger HIT domain-containing protein 3; structure genomics, ZF-HIT domain, TRIP-3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=31.85 E-value=15 Score=25.26 Aligned_cols=22 Identities=27% Similarity=0.629 Sum_probs=16.5
Q ss_pred CCcccccccccCC------CCeeeecccc
Q 028109 114 TNTCEVCDRSLLD------SFRFCSLGCK 136 (213)
Q Consensus 114 ~~~C~~C~R~L~d------~~rFCSL~CK 136 (213)
...|.+|+. ..- ..+||||.|-
T Consensus 12 ~~~C~vC~~-~~kY~CPrC~~~yCSl~C~ 39 (56)
T 2yqq_A 12 TVVCVICLE-KPKYRCPACRVPYCSVVCF 39 (56)
T ss_dssp CCCCTTTCS-CCSEECTTTCCEESSHHHH
T ss_pred CCccCcCcC-CCeeeCCCCCCCeeCHHHH
Confidence 446999988 322 4789999997
No 22
>2nrr_A Uvrabc system protein C; UVRC, endonuclase, NER, hydrolase; 1.20A {Thermotoga maritima}
Probab=28.45 E-value=9.9 Score=31.18 Aligned_cols=27 Identities=30% Similarity=0.314 Sum_probs=21.1
Q ss_pred hhhcccceeeEEEcCeEEEEeeCCCCC
Q 028109 81 KVLDISGVQTYVINSARVVFLNERPQP 107 (213)
Q Consensus 81 kl~D~S~IQtYvINsakVVFLn~RPq~ 107 (213)
+.||+|.||.--.-++-|||-+.+|.+
T Consensus 21 E~fDiSh~~G~~~VasmVVf~~g~p~K 47 (159)
T 2nrr_A 21 EGIDISHLQGKYTVASLVVFEDGFPKK 47 (159)
T ss_dssp EEEEEECC---CCEEEEEEEETTEECG
T ss_pred EEEECCccCCccceEEEEEEeCCccCh
Confidence 468999999988889999999998874
No 23
>2dip_A Zinc finger SWIM domain-containing protein 2; ZZ domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.44.1.6
Probab=27.73 E-value=12 Score=28.07 Aligned_cols=29 Identities=24% Similarity=0.629 Sum_probs=21.7
Q ss_pred eecccCCCCcCCccccc--ccCCCceeEEEe
Q 028109 39 MYCLDCMNGAFCSLCLD--YHKDHRAIQIRR 67 (213)
Q Consensus 39 ~FCldC~~~~lC~~Cl~--~H~~Hr~lQIRR 67 (213)
.-|+.|.+--||..|.. .|..|+.++|-+
T Consensus 47 ykC~~C~d~DLC~~C~~~~~H~~H~f~~i~~ 77 (98)
T 2dip_A 47 YKCTECIEYHLCQECFDSYCHLSHTFTFREK 77 (98)
T ss_dssp EEESSSSSCEEEHHHHHTTSGGGSCEEECCS
T ss_pred EECCCCCCccHHHHHHccCCCCCCCeeEecC
Confidence 56888887789999955 577787766654
No 24
>2fc7_A ZZZ3 protein; structure genomics, ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.6
Probab=26.43 E-value=29 Score=25.07 Aligned_cols=30 Identities=43% Similarity=0.773 Sum_probs=21.9
Q ss_pred eecccCCC---CcCCccccc------cc-CCCceeEEEec
Q 028109 39 MYCLDCMN---GAFCSLCLD------YH-KDHRAIQIRRS 68 (213)
Q Consensus 39 ~FCldC~~---~~lC~~Cl~------~H-~~Hr~lQIRRs 68 (213)
+-|++|.+ --||..|.. .| ..|+...|.++
T Consensus 37 ykC~~C~d~~~yDLC~~C~~~g~~~~~H~~~H~~~~i~~~ 76 (82)
T 2fc7_A 37 WHCQDCPPEMSLDFCDSCSDCLHETDIHKEDHQLEPIYRS 76 (82)
T ss_dssp EEESSSCSSSCCEEEGGGTTCCCCCSSCCSSSCEEEECSC
T ss_pred EECCcCCCCcceecHHHHHhCccccCCCCCCCCEEEeeCC
Confidence 66899986 679999953 45 57887777654
No 25
>1x4s_A Protein FON, zinc finger HIT domain containing protein 2; structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.85.1.2
Probab=23.65 E-value=17 Score=25.38 Aligned_cols=22 Identities=27% Similarity=0.668 Sum_probs=15.8
Q ss_pred Ccccccccc---cC------CCCeeeecccc
Q 028109 115 NTCEVCDRS---LL------DSFRFCSLGCK 136 (213)
Q Consensus 115 ~~C~~C~R~---L~------d~~rFCSL~CK 136 (213)
..|++|+.. .. =..+||||.|-
T Consensus 12 ~~C~vC~~~~~~~akY~CPrC~~rYCSl~C~ 42 (59)
T 1x4s_A 12 GPCGFCPAGEVQPARYTCPRCNAPYCSLRCY 42 (59)
T ss_dssp EEECSSCTTCCEEECEECTTTCCEESSHHHH
T ss_pred CcCcCCCCCcCCCccccCcCCCCCccChHHH
Confidence 479999852 11 15799999997
No 26
>2nrt_A Uvrabc system protein C; UVRC, endonuclease, RNAse H, helix hairpin helix, NER, hydrolase; 1.50A {Thermotoga maritima} PDB: 2nrv_A 2nrw_A 2nrx_A 2nrz_A
Probab=21.51 E-value=15 Score=31.40 Aligned_cols=27 Identities=30% Similarity=0.314 Sum_probs=23.6
Q ss_pred hhhcccceeeEEEcCeEEEEeeCCCCC
Q 028109 81 KVLDISGVQTYVINSARVVFLNERPQP 107 (213)
Q Consensus 81 kl~D~S~IQtYvINsakVVFLn~RPq~ 107 (213)
+.||+|.||.--.-++-|||-+.+|.+
T Consensus 26 E~fDiSh~~G~~~V~smVvf~~g~p~k 52 (220)
T 2nrt_A 26 EGIDISHLQGKYTVASLVVFEDGFPKK 52 (220)
T ss_dssp EEEEEEEETTTEEEEEEEEEETTEECG
T ss_pred EEEECCccCCccceEEEEEEeCCccCh
Confidence 458999999888889999999998874
Done!