Query 028110
Match_columns 213
No_of_seqs 149 out of 1272
Neff 6.6
Searched_HMMs 46136
Date Fri Mar 29 06:24:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028110.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028110hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03162 Y_phosphatase2: Tyros 100.0 1.6E-42 3.5E-47 282.6 12.6 153 51-203 1-153 (164)
2 KOG1572 Predicted protein tyro 100.0 1E-37 2.2E-42 263.5 15.7 168 45-212 48-219 (249)
3 smart00195 DSPc Dual specifici 99.9 5.5E-22 1.2E-26 155.4 14.5 129 58-197 2-133 (138)
4 PF13350 Y_phosphatase3: Tyros 99.9 8.4E-23 1.8E-27 165.5 9.7 121 58-180 14-163 (164)
5 TIGR01244 conserved hypothetic 99.9 6.6E-22 1.4E-26 156.3 14.2 118 57-181 2-125 (135)
6 cd00127 DSPc Dual specificity 99.9 1.7E-21 3.7E-26 151.8 13.8 131 57-196 2-135 (139)
7 PTZ00242 protein tyrosine phos 99.8 5.4E-19 1.2E-23 144.4 15.7 135 57-198 11-156 (166)
8 PTZ00393 protein tyrosine phos 99.8 2.2E-18 4.7E-23 147.5 16.7 130 64-200 94-229 (241)
9 PF04273 DUF442: Putative phos 99.8 8.5E-19 1.9E-23 134.3 11.3 100 57-163 2-107 (110)
10 PF00782 DSPc: Dual specificit 99.8 1.1E-18 2.4E-23 135.5 11.4 123 64-196 1-127 (133)
11 PRK12361 hypothetical protein; 99.8 1.9E-17 4E-22 157.2 15.8 137 55-198 93-235 (547)
12 PLN02727 NAD kinase 99.7 1E-17 2.2E-22 164.0 12.2 99 63-165 262-365 (986)
13 COG3453 Uncharacterized protei 99.7 7.5E-16 1.6E-20 118.5 12.2 113 57-176 3-121 (130)
14 COG2365 Protein tyrosine/serin 99.7 1.4E-16 3.1E-21 137.9 7.8 127 55-185 45-180 (249)
15 KOG1720 Protein tyrosine phosp 99.6 6E-15 1.3E-19 123.4 13.0 103 75-185 87-191 (225)
16 PF05706 CDKN3: Cyclin-depende 99.6 5.4E-15 1.2E-19 120.3 11.5 107 64-174 43-168 (168)
17 KOG1719 Dual specificity phosp 99.6 7.7E-14 1.7E-18 112.0 12.9 108 73-183 42-152 (183)
18 KOG1718 Dual specificity phosp 99.6 4.8E-14 1E-18 114.6 11.8 133 54-194 14-150 (198)
19 KOG1716 Dual specificity phosp 99.5 1.4E-13 3E-18 121.2 12.4 137 54-198 72-211 (285)
20 KOG1717 Dual specificity phosp 99.5 4.1E-13 8.9E-18 116.1 10.0 129 59-196 174-305 (343)
21 COG2453 CDC14 Predicted protei 99.3 9.6E-12 2.1E-16 102.7 10.6 77 102-182 68-148 (180)
22 KOG2836 Protein tyrosine phosp 99.2 3.7E-10 8E-15 89.1 12.2 138 64-208 19-165 (173)
23 smart00012 PTPc_DSPc Protein t 98.9 4.4E-09 9.5E-14 77.0 7.5 72 109-183 5-88 (105)
24 smart00404 PTPc_motif Protein 98.9 4.4E-09 9.5E-14 77.0 7.5 72 109-183 5-88 (105)
25 PF14566 PTPlike_phytase: Inos 98.9 8.4E-09 1.8E-13 82.8 7.7 65 97-165 83-148 (149)
26 KOG2386 mRNA capping enzyme, g 98.6 1.8E-07 3.9E-12 85.5 7.9 133 74-210 53-192 (393)
27 cd00047 PTPc Protein tyrosine 98.6 4.4E-07 9.5E-12 76.7 9.5 57 127-183 148-214 (231)
28 KOG2283 Clathrin coat dissocia 98.5 1.2E-07 2.7E-12 88.0 6.0 143 57-208 15-183 (434)
29 smart00194 PTPc Protein tyrosi 98.5 8.4E-07 1.8E-11 76.4 10.0 58 126-183 175-241 (258)
30 PHA02742 protein tyrosine phos 98.4 3.4E-06 7.3E-11 75.1 10.7 45 141-185 229-279 (303)
31 PRK15375 pathogenicity island 98.3 5.2E-06 1.1E-10 78.1 10.8 54 144-197 469-524 (535)
32 PHA02740 protein tyrosine phos 98.3 7.7E-06 1.7E-10 72.7 11.3 45 141-185 221-271 (298)
33 PHA02746 protein tyrosine phos 98.2 9.7E-06 2.1E-10 72.8 10.3 44 142-185 248-297 (323)
34 PHA02747 protein tyrosine phos 98.2 1E-05 2.2E-10 72.3 10.2 52 142-193 230-288 (312)
35 PHA02738 hypothetical protein; 98.1 2.7E-05 5.8E-10 69.9 10.4 45 141-185 227-277 (320)
36 PF00102 Y_phosphatase: Protei 98.0 2.6E-05 5.5E-10 65.0 7.3 57 127-183 153-218 (235)
37 COG5599 PTP2 Protein tyrosine 97.9 1.3E-05 2.8E-10 69.9 4.9 39 127-165 202-242 (302)
38 KOG0792 Protein tyrosine phosp 97.8 8.1E-05 1.8E-09 74.8 9.0 68 126-193 1045-1122(1144)
39 KOG0791 Protein tyrosine phosp 97.7 8.8E-05 1.9E-09 67.2 6.7 34 133-166 279-312 (374)
40 COG5350 Predicted protein tyro 97.6 0.00091 2E-08 54.1 10.9 120 76-199 26-151 (172)
41 KOG0790 Protein tyrosine phosp 97.2 0.0004 8.6E-09 64.6 4.8 39 126-164 431-474 (600)
42 KOG0789 Protein tyrosine phosp 97.1 0.0038 8.2E-08 56.9 9.7 41 140-180 298-345 (415)
43 KOG4228 Protein tyrosine phosp 97.0 0.00084 1.8E-08 68.0 5.2 37 128-164 714-753 (1087)
44 KOG0793 Protein tyrosine phosp 96.7 0.0026 5.5E-08 62.1 5.8 54 139-192 925-984 (1004)
45 cd01448 TST_Repeat_1 Thiosulfa 94.7 0.38 8.3E-06 36.2 9.2 43 126-169 64-106 (122)
46 cd01518 RHOD_YceA Member of th 94.2 0.28 6E-06 35.8 7.2 29 139-169 59-87 (101)
47 PLN02160 thiosulfate sulfurtra 94.1 0.27 5.8E-06 38.6 7.4 87 73-169 20-107 (136)
48 PF04343 DUF488: Protein of un 93.8 0.28 6.2E-06 37.6 6.9 42 75-116 6-54 (122)
49 KOG4471 Phosphatidylinositol 3 93.7 0.098 2.1E-06 50.5 4.9 73 139-211 372-465 (717)
50 KOG4228 Protein tyrosine phosp 93.7 0.037 8E-07 56.5 2.2 41 140-180 1017-1063(1087)
51 PF06602 Myotub-related: Myotu 93.6 0.14 2.9E-06 46.8 5.4 26 140-165 230-255 (353)
52 COG0607 PspE Rhodanese-related 92.9 0.68 1.5E-05 33.6 7.4 74 75-168 12-86 (110)
53 PF04179 Init_tRNA_PT: Initiat 92.9 0.46 1E-05 44.8 7.9 101 59-164 291-399 (451)
54 cd01533 4RHOD_Repeat_2 Member 92.3 0.4 8.6E-06 35.5 5.5 43 125-169 50-92 (109)
55 cd01519 RHOD_HSP67B2 Member of 91.9 0.79 1.7E-05 33.3 6.7 78 83-169 15-92 (106)
56 cd01523 RHOD_Lact_B Member of 91.9 1.1 2.4E-05 32.4 7.4 28 140-169 60-87 (100)
57 KOG1089 Myotubularin-related p 91.2 0.28 6E-06 47.4 4.4 28 139-166 342-369 (573)
58 PRK01415 hypothetical protein; 89.8 1.2 2.5E-05 38.8 6.7 38 140-179 170-211 (247)
59 KOG1530 Rhodanese-related sulf 89.6 2 4.3E-05 34.1 7.2 80 74-162 29-109 (136)
60 PRK00142 putative rhodanese-re 88.9 1.9 4E-05 38.8 7.5 28 140-169 170-197 (314)
61 PF00581 Rhodanese: Rhodanese- 88.8 4.9 0.00011 28.8 8.7 81 74-161 4-86 (113)
62 cd01528 RHOD_2 Member of the R 88.3 2.3 5E-05 30.8 6.5 41 127-169 43-84 (101)
63 TIGR02990 ectoine_eutA ectoine 88.1 1.5 3.3E-05 37.8 6.2 91 74-167 111-206 (239)
64 smart00450 RHOD Rhodanese Homo 86.0 5.3 0.00011 27.6 7.2 29 139-169 54-82 (100)
65 cd01527 RHOD_YgaP Member of th 83.6 6.7 0.00015 28.0 7.0 22 140-162 53-74 (99)
66 PRK09875 putative hydrolase; P 82.6 8.6 0.00019 34.2 8.5 37 74-110 39-78 (292)
67 cd01522 RHOD_1 Member of the R 82.5 11 0.00023 28.3 7.9 27 140-168 63-89 (117)
68 PRK00162 glpE thiosulfate sulf 82.5 5.9 0.00013 29.0 6.4 40 126-169 45-84 (108)
69 cd01443 Cdc25_Acr2p Cdc25 enzy 82.4 8.6 0.00019 28.5 7.3 20 140-159 65-84 (113)
70 cd01526 RHOD_ThiF Member of th 81.1 7.4 0.00016 29.3 6.6 27 140-168 71-97 (122)
71 PRK05600 thiamine biosynthesis 81.0 4.3 9.4E-05 37.2 6.2 26 142-169 333-358 (370)
72 TIGR02981 phageshock_pspE phag 81.0 3.5 7.6E-05 30.6 4.7 73 77-169 12-84 (101)
73 PF02571 CbiJ: Precorrin-6x re 79.8 4.1 8.9E-05 35.4 5.3 81 66-146 48-135 (249)
74 cd01534 4RHOD_Repeat_3 Member 79.0 6.1 0.00013 28.2 5.3 28 140-169 55-82 (95)
75 PF13292 DXP_synthase_N: 1-deo 78.3 3 6.5E-05 36.8 4.0 41 100-149 229-269 (270)
76 TIGR03865 PQQ_CXXCW PQQ-depend 77.0 37 0.00079 27.3 10.6 29 140-169 115-143 (162)
77 PF14671 DSPn: Dual specificit 76.8 5.9 0.00013 31.6 5.0 40 141-180 66-110 (141)
78 PRK11784 tRNA 2-selenouridine 76.8 12 0.00027 34.0 7.7 29 140-169 87-115 (345)
79 PF02126 PTE: Phosphotriestera 76.7 2.9 6.3E-05 37.5 3.6 99 74-173 43-186 (308)
80 PRK10287 thiosulfate:cyanide s 76.4 7.9 0.00017 28.9 5.4 42 126-169 45-86 (104)
81 PRK15378 inositol phosphate ph 75.8 2.5 5.4E-05 40.3 3.0 36 128-163 443-478 (564)
82 cd01524 RHOD_Pyr_redox Member 75.1 13 0.00028 26.2 6.1 39 126-168 38-76 (90)
83 PRK05320 rhodanese superfamily 74.7 6.8 0.00015 34.1 5.3 28 140-169 174-201 (257)
84 COG3473 Maleate cis-trans isom 73.9 37 0.0008 29.3 9.2 93 73-168 108-205 (238)
85 PLN02225 1-deoxy-D-xylulose-5- 73.4 5.3 0.00012 39.8 4.8 47 100-154 320-367 (701)
86 TIGR02571 ComEB ComE operon pr 73.0 12 0.00025 30.1 5.9 51 64-114 90-140 (151)
87 PLN02582 1-deoxy-D-xylulose-5- 72.4 7.4 0.00016 38.7 5.5 45 101-153 277-322 (677)
88 COG1154 Dxs Deoxyxylulose-5-ph 72.0 5.9 0.00013 38.7 4.6 46 100-154 237-282 (627)
89 COG5016 Pyruvate/oxaloacetate 71.6 31 0.00067 32.5 8.9 87 76-170 132-227 (472)
90 cd03174 DRE_TIM_metallolyase D 71.1 27 0.00058 29.5 8.1 73 75-152 121-201 (265)
91 PLN02723 3-mercaptopyruvate su 69.5 10 0.00022 33.9 5.3 42 126-169 254-295 (320)
92 cd01532 4RHOD_Repeat_1 Member 68.8 17 0.00038 25.8 5.6 30 140-169 49-78 (92)
93 cd01449 TST_Repeat_2 Thiosulfa 67.5 9.7 0.00021 28.0 4.1 41 127-169 64-104 (118)
94 PRK11493 sseA 3-mercaptopyruva 66.3 13 0.00028 32.4 5.2 43 126-170 216-258 (281)
95 PRK08057 cobalt-precorrin-6x r 65.1 7.5 0.00016 33.7 3.5 79 66-146 47-132 (248)
96 cd01444 GlpE_ST GlpE sulfurtra 64.5 22 0.00048 24.9 5.4 40 126-169 43-82 (96)
97 PF05925 IpgD: Enterobacterial 64.0 2.3 4.9E-05 40.9 0.0 23 140-162 452-474 (559)
98 cd07944 DRE_TIM_HOA_like 4-hyd 63.7 61 0.0013 28.2 9.0 81 75-163 115-202 (266)
99 cd07943 DRE_TIM_HOA 4-hydroxy- 63.0 25 0.00055 30.3 6.4 73 75-152 118-196 (263)
100 TIGR00715 precor6x_red precorr 61.0 18 0.00039 31.5 5.1 48 65-112 47-98 (256)
101 COG2099 CobK Precorrin-6x redu 60.8 19 0.00041 31.6 5.1 85 64-150 47-136 (257)
102 TIGR03167 tRNA_sel_U_synt tRNA 60.0 40 0.00087 30.2 7.3 25 143-168 76-100 (311)
103 PRK12331 oxaloacetate decarbox 59.0 53 0.0012 31.0 8.2 81 75-163 129-216 (448)
104 cd01529 4RHOD_Repeats Member o 57.4 16 0.00034 26.0 3.5 28 140-169 55-82 (96)
105 cd01525 RHOD_Kc Member of the 55.9 25 0.00054 25.2 4.4 28 140-169 64-91 (105)
106 cd01521 RHOD_PspE2 Member of t 55.8 20 0.00044 26.3 4.0 30 140-169 63-92 (110)
107 cd01447 Polysulfide_ST Polysul 55.6 16 0.00035 25.9 3.3 28 140-169 60-87 (103)
108 PRK08762 molybdopterin biosynt 55.5 33 0.00071 31.3 6.1 41 127-169 43-83 (376)
109 TIGR00204 dxs 1-deoxy-D-xylulo 55.2 19 0.00041 35.3 4.7 44 102-154 234-277 (617)
110 cd01530 Cdc25 Cdc25 phosphatas 54.9 16 0.00036 27.6 3.4 24 140-164 67-91 (121)
111 PRK07097 gluconate 5-dehydroge 54.6 1.2E+02 0.0025 25.4 9.0 82 64-152 13-98 (265)
112 PF00682 HMGL-like: HMGL-like 54.2 72 0.0016 26.6 7.6 82 75-164 114-201 (237)
113 cd07948 DRE_TIM_HCS Saccharomy 54.2 54 0.0012 28.5 7.0 71 76-151 119-194 (262)
114 PRK09629 bifunctional thiosulf 53.9 28 0.0006 34.2 5.6 43 126-170 208-250 (610)
115 TIGR03217 4OH_2_O_val_ald 4-hy 52.1 98 0.0021 27.9 8.5 74 74-152 119-199 (333)
116 PHA02588 cd deoxycytidylate de 51.9 43 0.00094 27.3 5.6 50 64-113 104-154 (168)
117 PRK14040 oxaloacetate decarbox 51.8 57 0.0012 32.0 7.3 82 75-164 130-218 (593)
118 PLN02234 1-deoxy-D-xylulose-5- 51.6 30 0.00065 34.3 5.4 48 99-154 276-324 (641)
119 cd07938 DRE_TIM_HMGL 3-hydroxy 51.3 59 0.0013 28.4 6.8 72 75-151 120-203 (274)
120 PRK12581 oxaloacetate decarbox 51.0 97 0.0021 29.6 8.5 82 75-164 138-226 (468)
121 PRK08195 4-hyroxy-2-oxovalerat 50.5 1E+02 0.0022 27.9 8.3 74 74-152 120-200 (337)
122 PRK11858 aksA trans-homoaconit 50.4 1.7E+02 0.0036 26.8 9.9 72 76-152 123-199 (378)
123 COG2089 SpsE Sialic acid synth 48.6 1.5E+02 0.0032 27.2 8.9 26 126-152 159-186 (347)
124 PRK14042 pyruvate carboxylase 48.2 1.5E+02 0.0032 29.3 9.5 82 74-163 128-216 (596)
125 cd07037 TPP_PYR_MenD Pyrimidin 47.7 1.4E+02 0.0031 23.9 8.1 38 75-113 4-42 (162)
126 PF08659 KR: KR domain; Inter 47.2 67 0.0015 25.7 6.1 68 75-150 17-90 (181)
127 PF03102 NeuB: NeuB family; I 46.9 70 0.0015 27.7 6.4 84 64-151 47-151 (241)
128 TIGR02660 nifV_homocitr homoci 46.7 2E+02 0.0044 26.1 9.8 73 75-152 119-196 (365)
129 PRK08063 enoyl-(acyl carrier p 46.2 83 0.0018 25.8 6.7 70 75-151 21-92 (250)
130 cd07039 TPP_PYR_POX Pyrimidine 46.1 1.5E+02 0.0033 23.6 8.8 38 75-113 7-45 (164)
131 PRK05692 hydroxymethylglutaryl 45.8 66 0.0014 28.4 6.3 72 76-152 127-210 (287)
132 TIGR02764 spore_ybaN_pdaB poly 45.2 1.4E+02 0.003 24.0 7.7 79 76-161 88-170 (191)
133 PRK12315 1-deoxy-D-xylulose-5- 45.1 67 0.0015 31.3 6.7 46 100-154 201-246 (581)
134 cd07937 DRE_TIM_PC_TC_5S Pyruv 45.0 1.2E+02 0.0026 26.4 7.7 73 75-152 124-203 (275)
135 TIGR01108 oadA oxaloacetate de 44.9 70 0.0015 31.3 6.8 82 75-164 124-212 (582)
136 PRK08862 short chain dehydroge 44.8 81 0.0018 26.2 6.4 69 76-151 23-93 (227)
137 PF00762 Ferrochelatase: Ferro 44.4 68 0.0015 28.7 6.2 44 74-117 246-300 (316)
138 PRK13394 3-hydroxybutyrate deh 44.2 1.1E+02 0.0023 25.3 7.1 69 76-151 25-94 (262)
139 TIGR02090 LEU1_arch isopropylm 44.0 2.1E+02 0.0046 26.0 9.5 72 76-152 119-195 (363)
140 PRK09282 pyruvate carboxylase 43.9 84 0.0018 30.8 7.1 82 75-164 129-217 (592)
141 cd01531 Acr2p Eukaryotic arsen 43.5 43 0.00093 24.6 4.1 23 140-162 61-83 (113)
142 PF00282 Pyridoxal_deC: Pyrido 43.3 26 0.00057 32.0 3.4 68 87-158 143-210 (373)
143 cd02007 TPP_DXS Thiamine pyrop 43.2 77 0.0017 26.1 6.0 64 80-152 125-191 (195)
144 PRK11493 sseA 3-mercaptopyruva 43.0 54 0.0012 28.4 5.3 43 126-169 72-114 (281)
145 COG1054 Predicted sulfurtransf 42.7 1.1E+02 0.0024 27.6 7.1 88 60-168 105-197 (308)
146 cd01520 RHOD_YbbB Member of th 42.6 39 0.00085 25.6 3.8 28 140-168 85-112 (128)
147 PRK05867 short chain dehydroge 42.6 93 0.002 25.7 6.5 70 75-151 26-96 (253)
148 PRK12571 1-deoxy-D-xylulose-5- 42.1 44 0.00096 33.0 5.0 47 100-154 240-286 (641)
149 cd01445 TST_Repeats Thiosulfat 41.9 80 0.0017 24.5 5.6 45 126-170 80-125 (138)
150 cd07940 DRE_TIM_IPMS 2-isoprop 40.5 2.1E+02 0.0046 24.6 8.5 72 76-152 121-200 (268)
151 cd07939 DRE_TIM_NifV Streptomy 40.0 2.4E+02 0.0052 24.1 10.8 72 76-152 117-193 (259)
152 PRK06947 glucose-1-dehydrogena 39.8 1.2E+02 0.0027 24.7 6.8 69 76-151 20-90 (248)
153 PRK07414 cob(I)yrinic acid a,c 39.6 42 0.00091 27.8 3.8 29 140-168 20-48 (178)
154 COG3830 ACT domain-containing 39.6 11 0.00025 27.8 0.3 26 149-174 8-35 (90)
155 COG1735 Php Predicted metal-de 39.3 2.2E+02 0.0047 25.9 8.4 33 140-174 164-196 (316)
156 PRK12937 short chain dehydroge 39.3 1.3E+02 0.0028 24.5 6.8 69 76-151 23-93 (245)
157 PF13607 Succ_CoA_lig: Succiny 38.0 88 0.0019 24.6 5.2 73 75-156 18-95 (138)
158 PRK07523 gluconate 5-dehydroge 37.6 1.4E+02 0.003 24.7 6.8 70 76-152 28-98 (255)
159 PRK06463 fabG 3-ketoacyl-(acyl 37.5 2E+02 0.0044 23.7 7.8 65 75-151 24-89 (255)
160 TIGR03799 NOD_PanD_pyr putativ 37.4 89 0.0019 30.1 6.1 57 97-157 221-280 (522)
161 cd07945 DRE_TIM_CMS Leptospira 37.3 1.5E+02 0.0032 26.1 7.1 73 75-152 121-202 (280)
162 TIGR00173 menD 2-succinyl-5-en 37.2 2E+02 0.0043 26.6 8.3 39 75-114 7-46 (432)
163 KOG1529 Mercaptopyruvate sulfu 37.0 56 0.0012 29.2 4.3 38 126-163 221-258 (286)
164 COG2442 Uncharacterized conser 37.0 29 0.00064 24.9 2.1 35 148-183 25-59 (79)
165 PRK08628 short chain dehydroge 36.9 1.9E+02 0.0042 23.8 7.5 69 75-151 24-93 (258)
166 PRK07814 short chain dehydroge 36.8 1.1E+02 0.0023 25.6 6.0 69 76-151 28-97 (263)
167 PRK08643 acetoin reductase; Va 36.8 1.5E+02 0.0031 24.5 6.8 69 76-151 20-89 (256)
168 PRK07478 short chain dehydroge 36.7 1.4E+02 0.0029 24.7 6.6 70 75-151 23-93 (254)
169 KOG0025 Zn2+-binding dehydroge 36.7 1.4E+02 0.0031 27.2 6.8 20 142-163 234-253 (354)
170 PRK06113 7-alpha-hydroxysteroi 36.5 1.5E+02 0.0033 24.5 6.9 69 76-151 29-98 (255)
171 TIGR02415 23BDH acetoin reduct 36.1 1.6E+02 0.0034 24.1 6.9 69 76-151 18-87 (254)
172 COG0276 HemH Protoheme ferro-l 35.9 97 0.0021 28.1 5.8 44 74-117 248-302 (320)
173 TIGR03586 PseI pseudaminic aci 35.7 3.1E+02 0.0066 24.9 9.0 27 125-151 145-172 (327)
174 PLN02790 transketolase 35.6 67 0.0015 31.8 5.1 51 97-154 191-241 (654)
175 PRK08213 gluconate 5-dehydroge 35.2 1.4E+02 0.003 24.7 6.5 69 76-151 30-99 (259)
176 PRK12429 3-hydroxybutyrate deh 35.2 1.6E+02 0.0035 24.0 6.8 69 76-151 22-91 (258)
177 PF02775 TPP_enzyme_C: Thiamin 34.5 1.2E+02 0.0026 23.4 5.6 42 97-148 112-153 (153)
178 COG2897 SseA Rhodanese-related 34.1 96 0.0021 27.6 5.4 29 139-168 232-260 (285)
179 PRK07411 hypothetical protein; 34.1 48 0.001 30.5 3.6 28 140-169 341-368 (390)
180 PF14555 UBA_4: UBA-like domai 34.0 61 0.0013 20.0 3.1 23 157-179 16-38 (43)
181 PRK08936 glucose-1-dehydrogena 33.9 1.9E+02 0.0042 23.9 7.1 69 76-151 25-95 (261)
182 PRK12330 oxaloacetate decarbox 33.6 3.2E+02 0.0069 26.4 9.1 82 75-164 130-220 (499)
183 PRK12481 2-deoxy-D-gluconate 3 33.6 2.5E+02 0.0054 23.3 7.8 67 76-151 26-93 (251)
184 PRK07666 fabG 3-ketoacyl-(acyl 33.5 1.7E+02 0.0036 23.8 6.6 70 76-152 25-95 (239)
185 PRK14041 oxaloacetate decarbox 33.1 2.9E+02 0.0063 26.3 8.7 81 75-163 128-215 (467)
186 PRK07454 short chain dehydroge 33.0 1.5E+02 0.0034 24.1 6.3 70 75-151 23-93 (241)
187 PF00308 Bac_DnaA: Bacterial d 32.9 98 0.0021 25.9 5.1 37 128-164 18-57 (219)
188 smart00400 ZnF_CHCC zinc finge 32.7 49 0.0011 21.5 2.6 31 145-176 23-53 (55)
189 PRK12935 acetoacetyl-CoA reduc 32.6 2.2E+02 0.0047 23.2 7.1 69 76-151 24-94 (247)
190 cd07995 TPK Thiamine pyrophosp 32.5 1.7E+02 0.0036 24.3 6.4 73 74-156 31-105 (208)
191 PF10302 DUF2407: DUF2407 ubiq 32.4 26 0.00056 26.1 1.3 11 142-152 86-96 (97)
192 TIGR03569 NeuB_NnaB N-acetylne 31.4 47 0.001 30.1 3.1 84 64-151 67-173 (329)
193 PRK06128 oxidoreductase; Provi 31.3 2.4E+02 0.0053 24.1 7.5 69 76-151 73-144 (300)
194 PRK05866 short chain dehydroge 31.2 1.6E+02 0.0035 25.4 6.3 70 76-152 58-128 (293)
195 PRK12558 glutamyl-tRNA synthet 31.2 79 0.0017 29.9 4.6 71 141-211 223-304 (445)
196 PRK01269 tRNA s(4)U8 sulfurtra 31.1 97 0.0021 29.4 5.2 28 140-169 448-475 (482)
197 TIGR01839 PHA_synth_II poly(R) 30.9 3.1E+02 0.0067 26.9 8.6 65 84-151 228-299 (560)
198 PTZ00089 transketolase; Provis 30.5 99 0.0021 30.6 5.3 50 97-153 202-251 (661)
199 cd07212 Pat_PNPLA9 Patatin-lik 30.4 72 0.0016 28.4 4.0 48 132-181 17-66 (312)
200 PRK07677 short chain dehydroge 30.2 2.1E+02 0.0046 23.5 6.7 69 76-151 19-88 (252)
201 PRK05653 fabG 3-ketoacyl-(acyl 30.1 2.7E+02 0.0059 22.3 7.2 70 75-152 22-93 (246)
202 PRK08589 short chain dehydroge 29.9 2.1E+02 0.0046 24.0 6.8 68 76-151 24-92 (272)
203 PRK06194 hypothetical protein; 29.6 2.8E+02 0.0061 23.2 7.5 70 76-152 24-94 (287)
204 PRK08277 D-mannonate oxidoredu 29.2 2.3E+02 0.0049 23.7 6.8 69 76-151 28-97 (278)
205 PRK07710 acetolactate synthase 29.1 3.5E+02 0.0076 25.9 8.8 77 75-163 23-99 (571)
206 PRK06483 dihydromonapterin red 28.7 3.2E+02 0.0069 22.1 7.5 64 76-151 20-84 (236)
207 PRK12939 short chain dehydroge 28.7 2.4E+02 0.0052 22.8 6.7 70 76-152 25-95 (250)
208 PF04255 DUF433: Protein of un 28.6 44 0.00094 22.0 1.8 27 154-180 18-44 (56)
209 PRK06138 short chain dehydroge 28.5 2.2E+02 0.0048 23.1 6.5 68 76-151 23-91 (252)
210 COG4981 Enoyl reductase domain 28.2 1.9E+02 0.0041 28.6 6.5 84 59-151 98-186 (717)
211 PRK06935 2-deoxy-D-gluconate 3 28.1 3.4E+02 0.0073 22.4 7.6 69 76-152 33-102 (258)
212 PRK06139 short chain dehydroge 28.1 1.8E+02 0.0039 25.8 6.2 68 76-150 25-93 (330)
213 PRK06701 short chain dehydroge 28.0 2.9E+02 0.0062 23.7 7.4 69 76-151 64-134 (290)
214 cd01535 4RHOD_Repeat_4 Member 27.8 1.8E+02 0.0038 22.8 5.5 38 126-167 36-73 (145)
215 PRK05876 short chain dehydroge 27.8 2.1E+02 0.0045 24.3 6.4 68 76-150 24-92 (275)
216 cd07941 DRE_TIM_LeuA3 Desulfob 27.8 3.5E+02 0.0076 23.4 7.9 72 76-152 126-206 (273)
217 TIGR00853 pts-lac PTS system, 27.7 96 0.0021 22.6 3.7 27 141-168 3-32 (95)
218 PRK06181 short chain dehydroge 27.6 2.5E+02 0.0055 23.1 6.8 70 76-152 19-89 (263)
219 PRK09389 (R)-citramalate synth 27.0 5.6E+02 0.012 24.4 10.7 72 76-152 121-197 (488)
220 TIGR00118 acolac_lg acetolacta 27.0 4.1E+02 0.0089 25.3 8.8 38 75-113 8-46 (558)
221 PRK06182 short chain dehydroge 27.0 3.3E+02 0.0071 22.7 7.4 63 76-151 21-84 (273)
222 PRK07035 short chain dehydroge 26.9 2.2E+02 0.0048 23.3 6.3 69 76-151 26-95 (252)
223 PRK06114 short chain dehydroge 26.8 3.5E+02 0.0076 22.2 7.5 69 76-151 26-96 (254)
224 TIGR02717 AcCoA-syn-alpha acet 26.7 5.3E+02 0.012 24.1 9.6 68 80-156 174-244 (447)
225 PRK12828 short chain dehydroge 26.6 2.5E+02 0.0055 22.4 6.4 68 76-152 25-93 (239)
226 PF10727 Rossmann-like: Rossma 26.5 50 0.0011 25.6 2.1 26 127-152 79-107 (127)
227 cd05567 PTS_IIB_mannitol PTS_I 26.4 98 0.0021 21.8 3.5 22 143-164 2-23 (87)
228 PRK05650 short chain dehydroge 26.4 2.4E+02 0.0053 23.5 6.5 69 76-151 18-87 (270)
229 PRK08527 acetolactate synthase 26.3 4.3E+02 0.0092 25.3 8.8 39 75-113 10-48 (563)
230 PRK07890 short chain dehydroge 26.1 2.3E+02 0.0051 23.1 6.3 69 76-151 23-92 (258)
231 PRK07774 short chain dehydroge 26.0 2.6E+02 0.0057 22.7 6.5 69 76-151 24-93 (250)
232 PRK01045 ispH 4-hydroxy-3-meth 25.9 3.1E+02 0.0068 24.5 7.2 79 64-152 33-124 (298)
233 PRK05993 short chain dehydroge 25.8 3.6E+02 0.0079 22.6 7.5 62 76-150 22-85 (277)
234 PRK07791 short chain dehydroge 25.8 3E+02 0.0065 23.5 7.1 69 76-151 24-102 (286)
235 PRK12743 oxidoreductase; Provi 25.8 3E+02 0.0066 22.7 6.9 70 76-152 20-91 (256)
236 PLN02746 hydroxymethylglutaryl 25.7 5.2E+02 0.011 23.6 9.5 70 76-150 169-250 (347)
237 PRK06965 acetolactate synthase 25.7 4E+02 0.0086 25.7 8.5 38 75-113 28-66 (587)
238 PRK07063 short chain dehydroge 25.7 2.7E+02 0.0058 23.0 6.6 69 76-151 25-96 (260)
239 PRK06123 short chain dehydroge 25.7 2.6E+02 0.0057 22.7 6.5 69 76-151 20-90 (248)
240 PRK08155 acetolactate synthase 25.7 4.4E+02 0.0095 25.2 8.8 38 75-113 20-58 (564)
241 PRK12826 3-ketoacyl-(acyl-carr 25.6 2.9E+02 0.0063 22.3 6.7 71 75-152 23-94 (251)
242 PRK08278 short chain dehydroge 25.4 3.5E+02 0.0076 22.7 7.4 69 76-151 24-100 (273)
243 PRK06882 acetolactate synthase 25.3 4E+02 0.0087 25.5 8.4 38 75-113 11-49 (574)
244 TIGR01496 DHPS dihydropteroate 25.3 4.4E+02 0.0096 22.7 9.4 56 104-163 34-93 (257)
245 PRK07789 acetolactate synthase 25.1 4.4E+02 0.0095 25.6 8.7 38 75-113 38-76 (612)
246 cd06831 PLPDE_III_ODC_like_AZI 25.1 3.3E+02 0.0071 25.0 7.5 89 64-154 84-177 (394)
247 PRK06172 short chain dehydroge 25.1 2.6E+02 0.0056 22.9 6.4 69 76-151 25-94 (253)
248 PRK07806 short chain dehydroge 24.9 3.4E+02 0.0074 22.0 7.0 71 75-152 23-95 (248)
249 PRK08340 glucose-1-dehydrogena 24.8 2.2E+02 0.0048 23.6 5.9 68 76-151 18-86 (259)
250 cd02012 TPP_TK Thiamine pyroph 24.7 1.9E+02 0.0042 24.6 5.6 49 97-154 182-230 (255)
251 PRK07109 short chain dehydroge 24.7 2.2E+02 0.0048 25.1 6.2 69 76-151 26-95 (334)
252 COG0787 Alr Alanine racemase [ 24.6 1.9E+02 0.0042 26.6 5.8 73 74-159 65-139 (360)
253 cd00158 RHOD Rhodanese Homolog 24.6 2.2E+02 0.0047 18.9 5.0 27 139-167 48-74 (89)
254 PLN03228 methylthioalkylmalate 24.5 3.3E+02 0.0071 26.3 7.5 73 75-152 215-297 (503)
255 COG1660 Predicted P-loop-conta 24.4 1.1E+02 0.0023 27.3 3.9 34 128-161 224-263 (286)
256 PF03668 ATP_bind_2: P-loop AT 24.2 1.2E+02 0.0026 27.0 4.3 17 143-159 244-260 (284)
257 PRK08085 gluconate 5-dehydroge 24.0 3.2E+02 0.007 22.4 6.7 70 76-152 27-97 (254)
258 PRK07062 short chain dehydroge 23.9 3.4E+02 0.0074 22.4 6.9 69 76-151 26-97 (265)
259 PRK05557 fabG 3-ketoacyl-(acyl 23.8 3.4E+02 0.0073 21.8 6.7 69 76-151 23-93 (248)
260 PRK07024 short chain dehydroge 23.8 2.4E+02 0.0052 23.3 5.9 26 126-151 62-88 (257)
261 PRK08199 thiamine pyrophosphat 23.8 4.9E+02 0.011 24.8 8.7 38 75-113 15-53 (557)
262 PLN02449 ferrochelatase 23.7 1.8E+02 0.0039 27.9 5.6 44 74-117 343-397 (485)
263 PRK09134 short chain dehydroge 23.6 3.8E+02 0.0082 22.0 7.1 69 76-151 27-97 (258)
264 PRK07064 hypothetical protein; 23.4 5.6E+02 0.012 24.2 8.9 38 75-113 10-48 (544)
265 PRK12823 benD 1,6-dihydroxycyc 23.4 4E+02 0.0087 21.8 7.2 68 76-151 26-94 (260)
266 cd07038 TPP_PYR_PDC_IPDC_like 23.3 3.8E+02 0.0081 21.2 8.2 38 75-113 4-42 (162)
267 PRK08322 acetolactate synthase 23.3 5.5E+02 0.012 24.3 8.9 38 75-113 8-45 (547)
268 PRK08978 acetolactate synthase 22.8 6.6E+02 0.014 23.8 9.3 77 75-163 8-84 (548)
269 TIGR01838 PHA_synth_I poly(R)- 22.8 4E+02 0.0087 25.8 7.8 65 85-152 202-274 (532)
270 PRK12360 4-hydroxy-3-methylbut 22.7 4.1E+02 0.0088 23.6 7.3 21 64-84 73-93 (281)
271 PRK08617 acetolactate synthase 22.6 5.6E+02 0.012 24.4 8.8 38 75-113 12-49 (552)
272 PF15192 TMEM213: TMEM213 fami 22.5 40 0.00088 24.1 0.7 17 146-162 36-52 (82)
273 cd00568 TPP_enzymes Thiamine p 22.4 2.9E+02 0.0063 21.1 5.9 41 97-149 127-167 (168)
274 KOG1200 Mitochondrial/plastidi 22.4 3.3E+02 0.0072 23.5 6.3 71 76-158 32-106 (256)
275 PRK12745 3-ketoacyl-(acyl-carr 22.4 4.3E+02 0.0093 21.5 7.3 69 75-150 19-89 (256)
276 PRK06949 short chain dehydroge 22.3 3.3E+02 0.0071 22.2 6.4 69 76-151 27-96 (258)
277 TIGR01963 PHB_DH 3-hydroxybuty 21.9 2.9E+02 0.0062 22.4 6.0 70 75-151 18-88 (255)
278 TIGR00109 hemH ferrochelatase. 21.9 3.5E+02 0.0076 24.1 6.9 44 74-117 251-305 (322)
279 cd06389 PBP1_iGluR_AMPA_GluR2 21.8 3.3E+02 0.0071 24.4 6.8 73 75-150 110-186 (370)
280 cd02002 TPP_BFDC Thiamine pyro 21.7 2.3E+02 0.005 22.3 5.2 23 126-149 155-177 (178)
281 PRK08993 2-deoxy-D-gluconate 3 21.6 4.6E+02 0.01 21.6 8.0 67 76-151 28-95 (253)
282 COG2517 Predicted RNA-binding 21.6 84 0.0018 26.5 2.5 28 41-68 158-188 (219)
283 PF04851 ResIII: Type III rest 21.4 2.7E+02 0.0058 21.2 5.5 36 129-164 12-48 (184)
284 PF04263 TPK_catalytic: Thiami 21.4 3.8E+02 0.0082 20.5 7.8 77 74-160 25-103 (123)
285 TIGR03206 benzo_BadH 2-hydroxy 21.3 4.3E+02 0.0093 21.4 6.9 69 76-151 21-90 (250)
286 PLN02723 3-mercaptopyruvate su 21.2 2.2E+02 0.0047 25.3 5.4 43 126-169 88-130 (320)
287 PRK07775 short chain dehydroge 21.0 3.7E+02 0.008 22.6 6.6 70 75-151 27-97 (274)
288 PRK06048 acetolactate synthase 21.0 7.3E+02 0.016 23.7 9.3 38 75-113 15-52 (561)
289 PRK12829 short chain dehydroge 21.0 3.3E+02 0.0071 22.3 6.2 27 126-152 70-97 (264)
290 COG2131 ComEB Deoxycytidylate 21.0 2.3E+02 0.0051 23.2 5.0 50 64-113 100-152 (164)
291 PRK12999 pyruvate carboxylase; 20.9 4.7E+02 0.01 27.9 8.4 55 102-164 700-754 (1146)
292 PRK07282 acetolactate synthase 20.8 6.4E+02 0.014 24.2 8.8 38 75-113 17-55 (566)
293 PRK08690 enoyl-(acyl carrier p 20.7 3E+02 0.0064 23.1 5.9 67 76-150 26-93 (261)
294 PRK05855 short chain dehydroge 20.7 2.3E+02 0.005 26.3 5.7 69 76-151 333-402 (582)
295 PRK08415 enoyl-(acyl carrier p 20.7 3.4E+02 0.0073 23.1 6.3 67 76-150 25-92 (274)
296 COG0794 GutQ Predicted sugar p 20.6 2.4E+02 0.0052 23.9 5.2 35 126-164 25-59 (202)
297 PRK06198 short chain dehydroge 20.6 4.8E+02 0.01 21.3 7.2 69 76-151 24-94 (260)
298 cd07211 Pat_PNPLA8 Patatin-lik 20.5 1.3E+02 0.0028 26.4 3.7 49 132-181 26-76 (308)
299 cd02008 TPP_IOR_alpha Thiamine 20.5 2.8E+02 0.006 22.1 5.5 44 97-149 132-175 (178)
300 TIGR01829 AcAcCoA_reduct aceto 20.5 3.5E+02 0.0077 21.7 6.2 68 75-151 17-88 (242)
301 COG2217 ZntA Cation transport 20.3 3.3E+02 0.0072 27.5 6.9 86 64-163 532-620 (713)
302 PLN02470 acetolactate synthase 20.2 6.7E+02 0.014 24.1 8.9 38 75-113 20-58 (585)
303 PRK06077 fabG 3-ketoacyl-(acyl 20.1 4.7E+02 0.01 21.1 7.1 70 75-151 23-94 (252)
304 PRK06500 short chain dehydroge 20.1 4.7E+02 0.01 21.1 7.1 67 75-151 23-90 (249)
305 PF00106 adh_short: short chai 20.1 3E+02 0.0064 20.8 5.4 70 77-153 19-92 (167)
No 1
>PF03162 Y_phosphatase2: Tyrosine phosphatase family; InterPro: IPR004861 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents protein-tyrosine phosphatases predominantly from fungi, plants and bacteria, several of which are putative enzymes. These proteins are closely related to the Y-phosphatase and DSPc families. This entry includes the PTPase SIW14 from Saccharomyces cerevisiae (Baker's yeast), which plays a role in actin filament organisation and endocytosis.; PDB: 2Q47_A 1XRI_A.
Probab=100.00 E-value=1.6e-42 Score=282.63 Aligned_cols=153 Identities=54% Similarity=0.961 Sum_probs=110.8
Q ss_pred eeCCCCccccccceEEcCCCChhcHHHHHhcCCcEEEEcCCCCCCCchHhHhhhCCceEEEeeecCCCCCCCCCCHHHHH
Q 028110 51 LIPPLNFSMVDNGIFRSGFPDSANFSFLQTLRLRSIIYLCPEPYPEANTEFLKSNGIKLFQFAIEGHKEPFVNIPEDMIR 130 (213)
Q Consensus 51 l~p~~Nf~~V~~~Lyrs~~p~~~~~~~L~~lGIktVI~Lr~e~~~~~~~~~~~~~Gi~~~~ipi~d~~~p~~~i~~~~i~ 130 (213)
|+||.||++|+++||||++|++.++++|+++|+||||+|++++++.....+++++||+++|+++.....+...++++.+.
T Consensus 1 lvpP~nF~~V~~~vYRS~~P~~~n~~fL~~L~LKTII~L~~e~~~~~~~~f~~~~~I~l~~~~~~~~~~~~~~~~~~~v~ 80 (164)
T PF03162_consen 1 LVPPLNFGMVEPGVYRSAQPTPANFPFLERLGLKTIINLRPEPPSQDFLEFAEENGIKLIHIPMSSSKDPWVPISEEQVA 80 (164)
T ss_dssp B---TT-EEEETTEEEESS--HHHHHHHHHHT-SEEEE--SS---HHHHHHHHHTT-EEEE-------GGG----HHHHH
T ss_pred CcCCccccCCCCCccCCCCCChhhHHHHHHCCCceEEEecCCCCCHHHHHHHhhcCceEEEeccccccCccccCCHHHHH
Confidence 58999999999999999999999999999999999999999987777788999999999999999877766677889999
Q ss_pred HHHHHHHhcCCCcEEEEcCCCCChHHHHHHHHHHHCCCCHHHHHHHHHhHhcccCCchHHHHHHHhccccccc
Q 028110 131 EALKVLLDVRNHPVLIHCKRGKHRTGCLVGCLRKLQKWCLSSVFDEYQRFAAAKARVSDQRFMELFDISSLKH 203 (213)
Q Consensus 131 ~al~~i~d~~~~PVLVHC~~Gk~RTG~vva~yl~~~gws~e~al~ey~~~~~~~~~~~~~~fie~f~~~~~~~ 203 (213)
++++.|++..++||||||.+|++|||+|+||||++|||++++|++||++|+.++.+..+++|||.|+.+++..
T Consensus 81 ~aL~~ild~~n~PvLiHC~~G~~rTG~vvg~lRk~Q~W~~~~i~~Ey~~f~~~~~~~~~~~fIe~f~~~~~~~ 153 (164)
T PF03162_consen 81 EALEIILDPRNYPVLIHCNHGKDRTGLVVGCLRKLQGWSLSSIFDEYRRFAGPKIRYLDEQFIELFDVELVVP 153 (164)
T ss_dssp HHHHHHH-GGG-SEEEE-SSSSSHHHHHHHHHHHHTTB-HHHHHHHHHHHHGGG--HHHHHHHHT--------
T ss_pred HHHHHHhCCCCCCEEEEeCCCCcchhhHHHHHHHHcCCCHHHHHHHHHHhcCCCCcHHHHHHHHhcCcceecc
Confidence 9999999989999999999999999999999999999999999999999999988999999999999988754
No 2
>KOG1572 consensus Predicted protein tyrosine phosphatase [Defense mechanisms]
Probab=100.00 E-value=1e-37 Score=263.48 Aligned_cols=168 Identities=68% Similarity=1.189 Sum_probs=160.0
Q ss_pred CCCceeeeCCCCccccccceEEcCCCChhcHHHHHhcCCcEEEEcCCCCCCCchHhHhhhCCceEEEeeecCCC----CC
Q 028110 45 TGDEVTLIPPLNFSMVDNGIFRSGFPDSANFSFLQTLRLRSIIYLCPEPYPEANTEFLKSNGIKLFQFAIEGHK----EP 120 (213)
Q Consensus 45 ~~~~~~l~p~~Nf~~V~~~Lyrs~~p~~~~~~~L~~lGIktVI~Lr~e~~~~~~~~~~~~~Gi~~~~ipi~d~~----~p 120 (213)
++.+..++||+||++|+++|||||.|.+.++.||+.+++|+||.|++|+++..+..+++.+||+++||.|++.+ .|
T Consensus 48 ~~~~~~lipPlnFs~V~~~lyRSg~P~~~NfsFL~~L~LksIisL~pE~yp~~nl~f~~~~~Ik~~~i~ie~~k~~~k~P 127 (249)
T KOG1572|consen 48 TTGEMVLIPPLNFSMVDNGLYRSGFPRPENFSFLKTLHLKSIISLCPEPYPEENLNFLESNGIKLYQIGIEGEKDNKKEP 127 (249)
T ss_pred CCCCceecCCccccccccceeecCCCCccchHHHHHhhhheEEEecCCCCChHHHHHHHhcCceEEEEecccccccccCC
Confidence 34445699999999999999999999999999999999999999999998888888999999999999999877 78
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCcEEEEcCCCCChHHHHHHHHHHHCCCCHHHHHHHHHhHhcccCCchHHHHHHHhcccc
Q 028110 121 FVNIPEDMIREALKVLLDVRNHPVLIHCKRGKHRTGCLVGCLRKLQKWCLSSVFDEYQRFAAAKARVSDQRFMELFDISS 200 (213)
Q Consensus 121 ~~~i~~~~i~~al~~i~d~~~~PVLVHC~~Gk~RTG~vva~yl~~~gws~e~al~ey~~~~~~~~~~~~~~fie~f~~~~ 200 (213)
++++..+.|.++++++++..++|+|+||..|++|||++++|++++++|+...+++||++|+.++.|..+++||+.||+..
T Consensus 128 ~~~~~~~~i~~~l~~lld~~N~P~Lihc~rGkhRtg~lVgclRklq~W~lssil~Ey~~fa~sk~r~~d~~Fie~fd~~~ 207 (249)
T KOG1572|consen 128 FVNIPDHSIRKALKVLLDKRNYPILIHCKRGKHRTGCLVGCLRKLQNWSLSSILDEYLRFAGSKGRRVDLRFIEMFDTNP 207 (249)
T ss_pred CCCChHHHHHHHHHHHhcccCCceEEecCCCCcchhhhHHHHHHHhccchhHHHHHHHHhccchhHHHHHHHHHHhcccc
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCccC
Q 028110 201 LKHLPMSFSCLK 212 (213)
Q Consensus 201 ~~~~~~~~~~~~ 212 (213)
.++.+.+++|..
T Consensus 208 ~~~~~~~~~~~~ 219 (249)
T KOG1572|consen 208 KKNVKLSIPCAY 219 (249)
T ss_pred cccccccccccc
Confidence 999999999975
No 3
>smart00195 DSPc Dual specificity phosphatase, catalytic domain.
Probab=99.89 E-value=5.5e-22 Score=155.37 Aligned_cols=129 Identities=17% Similarity=0.278 Sum_probs=102.0
Q ss_pred cccccceEEcCCCChhcHHHHHhcCCcEEEEcCCCCCCCchHhHhhhCCceEEEeeecCCCCCCCCCCHHHHHHHHHHHH
Q 028110 58 SMVDNGIFRSGFPDSANFSFLQTLRLRSIIYLCPEPYPEANTEFLKSNGIKLFQFAIEGHKEPFVNIPEDMIREALKVLL 137 (213)
Q Consensus 58 ~~V~~~Lyrs~~p~~~~~~~L~~lGIktVI~Lr~e~~~~~~~~~~~~~Gi~~~~ipi~d~~~p~~~i~~~~i~~al~~i~ 137 (213)
.+|.++||+|++|.+.++++|+++||++||||+.+.... ...|++|+++|+.|.... + ..+.+.+++++|.
T Consensus 2 ~~I~~~l~~G~~~~~~~~~~l~~~gi~~Vi~l~~~~~~~------~~~~~~~~~ipi~D~~~~--~-~~~~~~~~~~~i~ 72 (138)
T smart00195 2 SEILPHLYLGSYSSALNLALLKKLGITHVINVTNEVPNL------NKKGFTYLGVPILDNTET--K-ISPYFPEAVEFIE 72 (138)
T ss_pred cEEeCCeEECChhHcCCHHHHHHcCCCEEEEccCCCCCC------CCCCCEEEEEECCCCCCC--C-hHHHHHHHHHHHH
Confidence 367889999999999999999999999999999875421 247899999999984221 1 2345666777765
Q ss_pred h--cCCCcEEEEcCCCCChHHHHHHHHHHH-CCCCHHHHHHHHHhHhcccCCchHHHHHHHhc
Q 028110 138 D--VRNHPVLIHCKRGKHRTGCLVGCLRKL-QKWCLSSVFDEYQRFAAAKARVSDQRFMELFD 197 (213)
Q Consensus 138 d--~~~~PVLVHC~~Gk~RTG~vva~yl~~-~gws~e~al~ey~~~~~~~~~~~~~~fie~f~ 197 (213)
. ..++||||||.+|.+|||+++++|++. .||+.++|++.++..+ +.. .+++.|++++.
T Consensus 73 ~~~~~~~~VlVHC~~G~~RS~~v~~~yl~~~~~~~~~~A~~~v~~~R-~~~-~p~~~~~~qL~ 133 (138)
T smart00195 73 DAEKKGGKVLVHCQAGVSRSATLIIAYLMKYRNLSLNDAYDFVKDRR-PII-SPNFGFLRQLI 133 (138)
T ss_pred HHhcCCCeEEEECCCCCchHHHHHHHHHHHHhCCCHHHHHHHHHHHC-Ccc-CCCHhHHHHHH
Confidence 4 367899999999999999999999996 7999999999877755 433 35666766553
No 4
>PF13350 Y_phosphatase3: Tyrosine phosphatase family; PDB: 1YWF_A 2OZ5_B.
Probab=99.88 E-value=8.4e-23 Score=165.55 Aligned_cols=121 Identities=26% Similarity=0.390 Sum_probs=77.7
Q ss_pred cccccc-eEEcCCCC---hhcHHHHHhcCCcEEEEcCCCCCCCchHhHhhhCCceEEEeeecCCCCCC------------
Q 028110 58 SMVDNG-IFRSGFPD---SANFSFLQTLRLRSIIYLCPEPYPEANTEFLKSNGIKLFQFAIEGHKEPF------------ 121 (213)
Q Consensus 58 ~~V~~~-Lyrs~~p~---~~~~~~L~~lGIktVI~Lr~e~~~~~~~~~~~~~Gi~~~~ipi~d~~~p~------------ 121 (213)
..|.+| ||||+.+. ++++..|.++||++|||||+.......+.. ...|++++++|+.+.....
T Consensus 14 ~~ir~g~lyRS~~l~~lt~~d~~~L~~lgI~tIiDLRs~~E~~~~p~~-~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~ 92 (164)
T PF13350_consen 14 RRIRPGRLYRSGNLSNLTEADLERLRELGIRTIIDLRSPTERERAPDP-LIDGVQYVHIPIFGDDASSPDKLAELLQSSA 92 (164)
T ss_dssp -TS-TTSEEEES--TT--HHHHHHHHHTT--EEEE-S-HHHHHHHS-----TT-EEEE--SS-S-TTH----------HH
T ss_pred eeecCCcEEecCCcCcCCHHHHHHHHhCCCCEEEECCCccccccCCCC-CcCCceeeeeccccccccccccccccccccc
Confidence 356667 99999986 568899999999999999986221111111 1249999999997653320
Q ss_pred -------------CCCCHHHHHHHHHHHHhcCCCcEEEEcCCCCChHHHHHHHHHHHCCCCHHHHHHHHHhH
Q 028110 122 -------------VNIPEDMIREALKVLLDVRNHPVLIHCKRGKHRTGCLVGCLRKLQKWCLSSVFDEYQRF 180 (213)
Q Consensus 122 -------------~~i~~~~i~~al~~i~d~~~~PVLVHC~~Gk~RTG~vva~yl~~~gws~e~al~ey~~~ 180 (213)
..-..+.++++|+.|.+.. +||||||++||||||+++|++|.+.|++.++|+++|.+.
T Consensus 93 ~~~~~~~~~Y~~~~~~~~~~~~~~~~~l~~~~-~p~l~HC~aGKDRTG~~~alll~~lGV~~~~I~~DY~lS 163 (164)
T PF13350_consen 93 DAPRGMLEFYREMLESYAEAYRKIFELLADAP-GPVLFHCTAGKDRTGVVAALLLSLLGVPDEDIIADYLLS 163 (164)
T ss_dssp HHHHHHHHHHHHGGGSTHHHHHHHHHHHH-TT---EEEE-SSSSSHHHHHHHHHHHHTT--HHHHHHHHHGG
T ss_pred chhhHHHHHHHHHHHhhhHHHHHHHHHhccCC-CcEEEECCCCCccHHHHHHHHHHHcCCCHHHHHHHHHhc
Confidence 0112567888999998755 799999999999999999999999999999999999874
No 5
>TIGR01244 conserved hypothetical protein TIGR01244. No member of this family is characterized. The member from Xylella fastidiosa is a longer protein with an N-terminal region described by this model, followed by a metallo-beta-lactamase family domain and an additional C-terminal region. Members scoring above the trusted cutoff are limited to the proteobacteria.
Probab=99.88 E-value=6.6e-22 Score=156.26 Aligned_cols=118 Identities=14% Similarity=0.202 Sum_probs=97.4
Q ss_pred ccccccceEEcCCCChhcHHHHHhcCCcEEEEcCCCCCC---C---chHhHhhhCCceEEEeeecCCCCCCCCCCHHHHH
Q 028110 57 FSMVDNGIFRSGFPDSANFSFLQTLRLRSIIYLCPEPYP---E---ANTEFLKSNGIKLFQFAIEGHKEPFVNIPEDMIR 130 (213)
Q Consensus 57 f~~V~~~Lyrs~~p~~~~~~~L~~lGIktVI~Lr~e~~~---~---~~~~~~~~~Gi~~~~ipi~d~~~p~~~i~~~~i~ 130 (213)
+.+|++.+|+|++|++.+++.|+++||++|||||+.... . ...+++...|++|+|+|+.... ++.+.+.
T Consensus 2 ~~~i~~~~~~s~qlt~~d~~~L~~~GiktVIdlR~~~E~~~~p~~~~~~~~a~~~gl~y~~iPv~~~~-----~~~~~v~ 76 (135)
T TIGR01244 2 IRKLTEHLYVSPQLTKADAAQAAQLGFKTVINNRPDREEESQPDFAQIKAAAEAAGVTYHHQPVTAGD-----ITPDDVE 76 (135)
T ss_pred ceEcCCCeeEcCCCCHHHHHHHHHCCCcEEEECCCCCCCCCCCCHHHHHHHHHHCCCeEEEeecCCCC-----CCHHHHH
Confidence 467899999999999999999999999999999985221 1 1234567789999999998752 3567777
Q ss_pred HHHHHHHhcCCCcEEEEcCCCCChHHHHHHHHHHHCCCCHHHHHHHHHhHh
Q 028110 131 EALKVLLDVRNHPVLIHCKRGKHRTGCLVGCLRKLQKWCLSSVFDEYQRFA 181 (213)
Q Consensus 131 ~al~~i~d~~~~PVLVHC~~Gk~RTG~vva~yl~~~gws~e~al~ey~~~~ 181 (213)
.+.+.+ +..++|||+||++|+ |||+++++++..+||+.++|+++.+...
T Consensus 77 ~f~~~~-~~~~~pvL~HC~sG~-Rt~~l~al~~~~~g~~~~~i~~~~~~~G 125 (135)
T TIGR01244 77 TFRAAI-GAAEGPVLAYCRSGT-RSSLLWGFRQAAEGVPVEEIVRRAQAAG 125 (135)
T ss_pred HHHHHH-HhCCCCEEEEcCCCh-HHHHHHHHHHHHcCCCHHHHHHHHHHcC
Confidence 555555 446799999999999 9999999999899999999999887754
No 6
>cd00127 DSPc Dual specificity phosphatases (DSP); Ser/Thr and Tyr protein phosphatases. Structurally similar to tyrosine-specific phosphatases but with a shallower active site cleft and a distinctive active site signature motif, HCxxGxxR. Characterized as VHR- or Cdc25-like.
Probab=99.87 E-value=1.7e-21 Score=151.81 Aligned_cols=131 Identities=18% Similarity=0.255 Sum_probs=103.6
Q ss_pred ccccccceEEcCCCChhcHHHHHhcCCcEEEEcCCCCCCCchHhHhhhCCceEEEeeecCCCCCCCCCCHHHHHHHHHHH
Q 028110 57 FSMVDNGIFRSGFPDSANFSFLQTLRLRSIIYLCPEPYPEANTEFLKSNGIKLFQFAIEGHKEPFVNIPEDMIREALKVL 136 (213)
Q Consensus 57 f~~V~~~Lyrs~~p~~~~~~~L~~lGIktVI~Lr~e~~~~~~~~~~~~~Gi~~~~ipi~d~~~p~~~i~~~~i~~al~~i 136 (213)
..+|.++||+|++|...+.++|+++||++||||+++... ......|++|+|+|+.|...+. ....+..+++++
T Consensus 2 ~~~i~~~l~~g~~~~~~d~~~L~~~gi~~VI~l~~~~~~----~~~~~~~~~~~~~~~~D~~~~~---~~~~~~~~~~~i 74 (139)
T cd00127 2 LSEITPGLYLGSYPAASDKELLKKLGITHVLNVAKEVPN----ENLFLSDFNYLYVPILDLPSQD---ISKYFDEAVDFI 74 (139)
T ss_pred cCEEcCCeEECChhHhcCHHHHHHcCCCEEEEcccCCCC----cccCCCCceEEEEEceeCCCCC---hHHHHHHHHHHH
Confidence 357899999999999999999999999999999997543 2234589999999999875331 234555566666
Q ss_pred Hh--cCCCcEEEEcCCCCChHHHHHHHHHHH-CCCCHHHHHHHHHhHhcccCCchHHHHHHHh
Q 028110 137 LD--VRNHPVLIHCKRGKHRTGCLVGCLRKL-QKWCLSSVFDEYQRFAAAKARVSDQRFMELF 196 (213)
Q Consensus 137 ~d--~~~~PVLVHC~~Gk~RTG~vva~yl~~-~gws~e~al~ey~~~~~~~~~~~~~~fie~f 196 (213)
.+ ..++||+|||.+|.+|||+++++|++. .+|+.++|++.++..++ .. ..++.|++++
T Consensus 75 ~~~~~~~~~vlVHC~~G~~Rs~~~~~~~l~~~~~~~~~~a~~~vr~~r~-~~-~~~~~~~~~l 135 (139)
T cd00127 75 DDAREKGGKVLVHCLAGVSRSATLVIAYLMKTLGLSLREAYEFVKSRRP-II-SPNAGFMRQL 135 (139)
T ss_pred HHHHhcCCcEEEECCCCCchhHHHHHHHHHHHcCCCHHHHHHHHHHHCC-cc-CCCHHHHHHH
Confidence 54 257899999999999999999999885 79999999998877654 33 3667776654
No 7
>PTZ00242 protein tyrosine phosphatase; Provisional
Probab=99.82 E-value=5.4e-19 Score=144.36 Aligned_cols=135 Identities=17% Similarity=0.279 Sum_probs=105.7
Q ss_pred ccccccceEEcCCCChh----cHHHHHhcCCcEEEEcCCCCCCCchHhHhhhCCceEEEeeecCCCCCCCCCCHHHHHHH
Q 028110 57 FSMVDNGIFRSGFPDSA----NFSFLQTLRLRSIIYLCPEPYPEANTEFLKSNGIKLFQFAIEGHKEPFVNIPEDMIREA 132 (213)
Q Consensus 57 f~~V~~~Lyrs~~p~~~----~~~~L~~lGIktVI~Lr~e~~~~~~~~~~~~~Gi~~~~ipi~d~~~p~~~i~~~~i~~a 132 (213)
..++...++....|... +++.|++.||++||+++.+.+ ..+.++..||+|.++|+.|...| +.+.+.++
T Consensus 11 ~~~~~~r~~~~~~P~~~~~~~~l~~L~~~gI~~Iv~l~~~~~---~~~~~~~~gi~~~~~p~~D~~~P----~~~~i~~~ 83 (166)
T PTZ00242 11 IEYVLFKFLILDAPSPSNLPLYIKELQRYNVTHLVRVCGPTY---DAELLEKNGIEVHDWPFDDGAPP----PKAVIDNW 83 (166)
T ss_pred eeeeceEEEEecCCCcccHHHHHHHHHhCCCeEEEecCCCCC---CHHHHHHCCCEEEecCCCCCCCC----CHHHHHHH
Confidence 44566778888888764 558999999999999987543 23457789999999999987666 35556666
Q ss_pred HHHHHh------cCCCcEEEEcCCCCChHHHHHHHHHHHC-CCCHHHHHHHHHhHhcccCCchHHHHHHHhcc
Q 028110 133 LKVLLD------VRNHPVLIHCKRGKHRTGCLVGCLRKLQ-KWCLSSVFDEYQRFAAAKARVSDQRFMELFDI 198 (213)
Q Consensus 133 l~~i~d------~~~~PVLVHC~~Gk~RTG~vva~yl~~~-gws~e~al~ey~~~~~~~~~~~~~~fie~f~~ 198 (213)
++++.+ ..++||+|||.+|.+|||+++++||+.. ||+.++|+..++..++......+..|++.|..
T Consensus 84 ~~~i~~~~~~~~~~g~~V~VHC~aGigRSgt~~a~yL~~~~~~s~~eAi~~vr~~R~~~i~~~Q~~~l~~~~~ 156 (166)
T PTZ00242 84 LRLLDQEFAKQSTPPETIAVHCVAGLGRAPILVALALVEYGGMEPLDAVGFVREKRKGAINQTQLQFLKKYKP 156 (166)
T ss_pred HHHHHHHHHhhccCCCeEEEECCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHCCCCchHHHHHHHHHHHH
Confidence 665543 2489999999999999999999999875 59999999988887755444457888888763
No 8
>PTZ00393 protein tyrosine phosphatase; Provisional
Probab=99.80 E-value=2.2e-18 Score=147.48 Aligned_cols=130 Identities=14% Similarity=0.223 Sum_probs=105.9
Q ss_pred eEEcCCCChh----cHHHHHhcCCcEEEEcCCCCCCCchHhHhhhCCceEEEeeecCCCCCCCCCCHHHHHHHHHHHHh-
Q 028110 64 IFRSGFPDSA----NFSFLQTLRLRSIIYLCPEPYPEANTEFLKSNGIKLFQFAIEGHKEPFVNIPEDMIREALKVLLD- 138 (213)
Q Consensus 64 Lyrs~~p~~~----~~~~L~~lGIktVI~Lr~e~~~~~~~~~~~~~Gi~~~~ipi~d~~~p~~~i~~~~i~~al~~i~d- 138 (213)
+.....|... .++.|+..||++||+++...++ .+.+.+.||+|+++|++|...|. .+.+.++++++..
T Consensus 94 fLi~~~P~~~~~~~yl~eLk~~gV~~lVrlcE~~Yd---~~~~~~~GI~~~~lpipDg~aPs----~~~i~~~l~~i~~~ 166 (241)
T PTZ00393 94 ILILDAPTNDLLPLYIKEMKNYNVTDLVRTCERTYN---DGEITSAGINVHELIFPDGDAPT----VDIVSNWLTIVNNV 166 (241)
T ss_pred EEEeCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCC---HHHHHHcCCeEEEeecCCCCCCC----HHHHHHHHHHHHHH
Confidence 5566777754 4589999999999999886542 34567899999999999987773 5667777777653
Q ss_pred -cCCCcEEEEcCCCCChHHHHHHHHHHHCCCCHHHHHHHHHhHhcccCCchHHHHHHHhcccc
Q 028110 139 -VRNHPVLIHCKRGKHRTGCLVGCLRKLQKWCLSSVFDEYQRFAAAKARVSDQRFMELFDISS 200 (213)
Q Consensus 139 -~~~~PVLVHC~~Gk~RTG~vva~yl~~~gws~e~al~ey~~~~~~~~~~~~~~fie~f~~~~ 200 (213)
..+++|+|||.+|.||||+++|+||+..|++.++|++.++..++.-....+.+|++.|....
T Consensus 167 l~~g~~VaVHC~AGlGRTGtl~AayLI~~GmspeeAI~~VR~~RPgAIn~~Q~~fL~~y~~~~ 229 (241)
T PTZ00393 167 IKNNRAVAVHCVAGLGRAPVLASIVLIEFGMDPIDAIVFIRDRRKGAINKRQLQFLKAYKKKK 229 (241)
T ss_pred HhcCCeEEEECCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Confidence 36789999999999999999999999999999999998888775544567899999988754
No 9
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=99.79 E-value=8.5e-19 Score=134.30 Aligned_cols=100 Identities=20% Similarity=0.396 Sum_probs=70.4
Q ss_pred ccccccceEEcCCCChhcHHHHHhcCCcEEEEcCCCCCC------CchHhHhhhCCceEEEeeecCCCCCCCCCCHHHHH
Q 028110 57 FSMVDNGIFRSGFPDSANFSFLQTLRLRSIIYLCPEPYP------EANTEFLKSNGIKLFQFAIEGHKEPFVNIPEDMIR 130 (213)
Q Consensus 57 f~~V~~~Lyrs~~p~~~~~~~L~~lGIktVI~Lr~e~~~------~~~~~~~~~~Gi~~~~ipi~d~~~p~~~i~~~~i~ 130 (213)
|.+|++.++.|++|++.+++.|++.|||+|||||++... ..+.+++++.|++|+|+|+.... ++.+.+.
T Consensus 2 i~~i~~~~~vs~Q~~~~d~~~la~~GfktVInlRpd~E~~~qp~~~~~~~~a~~~Gl~y~~iPv~~~~-----~~~~~v~ 76 (110)
T PF04273_consen 2 IRQISDDLSVSGQPSPEDLAQLAAQGFKTVINLRPDGEEPGQPSSAEEAAAAEALGLQYVHIPVDGGA-----ITEEDVE 76 (110)
T ss_dssp -EEEETTEEEECS--HHHHHHHHHCT--EEEE-S-TTSTTT-T-HHCHHHHHHHCT-EEEE----TTT-------HHHHH
T ss_pred CEecCCCeEECCCCCHHHHHHHHHCCCcEEEECCCCCCCCCCCCHHHHHHHHHHcCCeEEEeecCCCC-----CCHHHHH
Confidence 578899999999999999999999999999999986321 23667889999999999999852 3578888
Q ss_pred HHHHHHHhcCCCcEEEEcCCCCChHHHHHHHHH
Q 028110 131 EALKVLLDVRNHPVLIHCKRGKHRTGCLVGCLR 163 (213)
Q Consensus 131 ~al~~i~d~~~~PVLVHC~~Gk~RTG~vva~yl 163 (213)
.+.+.+.. .++|||+||..|. |++.+.++..
T Consensus 77 ~f~~~l~~-~~~Pvl~hC~sG~-Ra~~l~~l~~ 107 (110)
T PF04273_consen 77 AFADALES-LPKPVLAHCRSGT-RASALWALAQ 107 (110)
T ss_dssp HHHHHHHT-TTTSEEEE-SCSH-HHHHHHHHHH
T ss_pred HHHHHHHh-CCCCEEEECCCCh-hHHHHHHHHh
Confidence 66666554 6789999999998 9998888764
No 10
>PF00782 DSPc: Dual specificity phosphatase, catalytic domain; InterPro: IPR000340 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents dual specificity protein-tyrosine phosphatases. Ser/Thr and Tyr dual specificity phosphatases are a group of enzymes with both Ser/Thr (3.1.3.16 from EC) and tyrosine specific protein phosphatase (3.1.3.48 from EC) activity able to remove both the serine/threonine or tyrosine-bound phosphate group from a wide range of phosphoproteins, including a number of enzymes which have been phosphorylated under the action of a kinase. Dual specificity protein phosphatases (DSPs) regulate mitogenic signal transduction and control the cell cycle. The crystal structure of a human DSP, vaccinia H1-related phosphatase (or VHR), has been determined at 2.1 angstrom resolution []. A shallow active site pocket in VHR allows for the hydrolysis of phosphorylated serine, threonine, or tyrosine protein residues, whereas the deeper active site of protein tyrosine phosphatases (PTPs) restricts substrate specificity to only phosphotyrosine. Positively charged crevices near the active site may explain the enzyme's preference for substrates with two phosphorylated residues. The VHR structure defines a conserved structural scaffold for both DSPs and PTPs. A "recognition region" connecting helix alpha1 to strand beta1, may determine differences in substrate specificity between VHR, the PTPs, and other DSPs. These proteins may also have inactive phosphatase domains, and dependent on the domain composition this loss of catalytic activity has different effects on protein function. Inactive single domain phosphatases can still specifically bind substrates, and protect again dephosphorylation, while the inactive domains of tandem phosphatases can be further subdivided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre [].; GO: 0008138 protein tyrosine/serine/threonine phosphatase activity, 0006470 protein dephosphorylation; PDB: 2G6Z_A 1MKP_A 1YZ4_A 2P4D_A 1M3G_A 1ZZW_A 2OUD_A 2HXP_A 3LJ8_A 1OHD_A ....
Probab=99.79 E-value=1.1e-18 Score=135.49 Aligned_cols=123 Identities=20% Similarity=0.424 Sum_probs=96.0
Q ss_pred eEEcCCCChhcHHHHHhcCCcEEEEcCCCCCCCchHhHhhhCCceEEEeeecCC-CCCCCCCCHHHHHHHHHHHHh--cC
Q 028110 64 IFRSGFPDSANFSFLQTLRLRSIIYLCPEPYPEANTEFLKSNGIKLFQFAIEGH-KEPFVNIPEDMIREALKVLLD--VR 140 (213)
Q Consensus 64 Lyrs~~p~~~~~~~L~~lGIktVI~Lr~e~~~~~~~~~~~~~Gi~~~~ipi~d~-~~p~~~i~~~~i~~al~~i~d--~~ 140 (213)
||.|+.+.+. ..+|+++||++|||++.+.... ......+++++++|+.|. ..+. .+.+.++.++|.+ ..
T Consensus 1 lylG~~~~a~-~~~l~~~~I~~Vin~~~~~~~~---~~~~~~~~~~~~i~~~D~~~~~~----~~~~~~~~~~i~~~~~~ 72 (133)
T PF00782_consen 1 LYLGSYPAAS-IAFLKNLGITHVINLQEECPNP---YFYKPEGIEYLRIPIDDDPEEPI----LEHLDQAVEFIENAISE 72 (133)
T ss_dssp EEEEEHHHHC-HHHHHHTTEEEEEECSSSSSTS---HHHTTTTSEEEEEEEESSTTSHG----GGGHHHHHHHHHHHHHT
T ss_pred CEEeCHHHHh-HHHHHHCCCCEEEEccCCCcCc---hhcccCCCEEEEEEecCCCCcch----HHHHHHHHHhhhhhhcc
Confidence 7999999998 9999999999999999975332 334568999999999983 2221 2455566666654 36
Q ss_pred CCcEEEEcCCCCChHHHHHHHHHHH-CCCCHHHHHHHHHhHhcccCCchHHHHHHHh
Q 028110 141 NHPVLIHCKRGKHRTGCLVGCLRKL-QKWCLSSVFDEYQRFAAAKARVSDQRFMELF 196 (213)
Q Consensus 141 ~~PVLVHC~~Gk~RTG~vva~yl~~-~gws~e~al~ey~~~~~~~~~~~~~~fie~f 196 (213)
+++|||||.+|.+|||+++++||+. .||+.++|++.++..+ +.. ..+..|++++
T Consensus 73 ~~~VlVHC~~G~~RS~~v~~ayLm~~~~~~~~~A~~~v~~~r-p~~-~~~~~~~~~L 127 (133)
T PF00782_consen 73 GGKVLVHCKAGLSRSGAVAAAYLMKKNGMSLEEAIEYVRSRR-PQI-NPNPSFIRQL 127 (133)
T ss_dssp TSEEEEEESSSSSHHHHHHHHHHHHHHTSSHHHHHHHHHHHS-TTS-THHHHHHHHH
T ss_pred cceeEEEeCCCcccchHHHHHHHHHHcCCCHHHHHHHHHHHC-CCC-CCCHHHHHHH
Confidence 8999999999999999999999997 7999999999777765 533 3555665554
No 11
>PRK12361 hypothetical protein; Provisional
Probab=99.75 E-value=1.9e-17 Score=157.20 Aligned_cols=137 Identities=16% Similarity=0.219 Sum_probs=107.9
Q ss_pred CCccccccceEEcCCCChhcHHHHHhcCCcEEEEcCCCCCCCchHhHhhhCCceEEEeeecCCCCCCCCCCHHHHHHHHH
Q 028110 55 LNFSMVDNGIFRSGFPDSANFSFLQTLRLRSIIYLCPEPYPEANTEFLKSNGIKLFQFAIEGHKEPFVNIPEDMIREALK 134 (213)
Q Consensus 55 ~Nf~~V~~~Lyrs~~p~~~~~~~L~~lGIktVI~Lr~e~~~~~~~~~~~~~Gi~~~~ipi~d~~~p~~~i~~~~i~~al~ 134 (213)
+.+.+|.++||.|+.+.+.+++.|+++||++||||+.|.... .......|++|.++|+.|...| +.+++.++++
T Consensus 93 ~~~~~I~~~l~lG~~~~a~d~~~L~~~gI~~Vldlt~E~~~~--~~~~~~~~i~yl~iPi~D~~~p----~~~~l~~a~~ 166 (547)
T PRK12361 93 PAIQKIDENLYLGCRLFPADLEKLKSNKITAILDVTAEFDGL--DWSLTEEDIDYLNIPILDHSVP----TLAQLNQAIN 166 (547)
T ss_pred CcceEEcCcEEECCCCCcccHHHHHHcCCCEEEEcccccccc--cccccccCceEEEeecCCCCCC----cHHHHHHHHH
Confidence 467899999999999999999999999999999999763211 0111246899999999997665 3578888999
Q ss_pred HHHhc--CCCcEEEEcCCCCChHHHHHHHHHHH--CCCCHHHHHHHHHhHhcccCC--chHHHHHHHhcc
Q 028110 135 VLLDV--RNHPVLIHCKRGKHRTGCLVGCLRKL--QKWCLSSVFDEYQRFAAAKAR--VSDQRFMELFDI 198 (213)
Q Consensus 135 ~i~d~--~~~PVLVHC~~Gk~RTG~vva~yl~~--~gws~e~al~ey~~~~~~~~~--~~~~~fie~f~~ 198 (213)
+|.+. .+++|||||.+|.+||++++++||+. .+|+.++|++..+..+ +.+. ..+.+.++.|..
T Consensus 167 ~i~~~~~~~~~VlVHC~~G~sRSa~vv~ayLm~~~~~~~~~eA~~~vr~~R-p~v~~n~~q~~~l~~~~~ 235 (547)
T PRK12361 167 WIHRQVRANKSVVVHCALGRGRSVLVLAAYLLCKDPDLTVEEVLQQIKQIR-KTARLNKRQLRALEKMLE 235 (547)
T ss_pred HHHHHHHCCCeEEEECCCCCCcHHHHHHHHHHHhccCCCHHHHHHHHHHHC-CCCCCCHHHHHHHHHHHH
Confidence 98763 57899999999999999999999996 4899999999887755 4332 344455555543
No 12
>PLN02727 NAD kinase
Probab=99.74 E-value=1e-17 Score=164.00 Aligned_cols=99 Identities=19% Similarity=0.370 Sum_probs=86.6
Q ss_pred ceEEcCCCChhcHHHHHhcCCcEEEEcCCCCCC-----CchHhHhhhCCceEEEeeecCCCCCCCCCCHHHHHHHHHHHH
Q 028110 63 GIFRSGFPDSANFSFLQTLRLRSIIYLCPEPYP-----EANTEFLKSNGIKLFQFAIEGHKEPFVNIPEDMIREALKVLL 137 (213)
Q Consensus 63 ~Lyrs~~p~~~~~~~L~~lGIktVI~Lr~e~~~-----~~~~~~~~~~Gi~~~~ipi~d~~~p~~~i~~~~i~~al~~i~ 137 (213)
.+|||+||+++++++|.+.|||||||||++... ..+.+++++.|++|+|+|+.+...| +.+++.++.+.+.
T Consensus 262 ~~~rsgQpspe~la~LA~~GfKTIINLRpd~E~~q~~~~ee~eAae~~GL~yVhIPVs~~~ap----t~EqVe~fa~~l~ 337 (986)
T PLN02727 262 AFWRGGQVTEEGLKWLLEKGFKTIVDLRAEIVKDNFYQAAVDDAISSGKIEVVKIPVEVRTAP----SAEQVEKFASLVS 337 (986)
T ss_pred eEEEeCCCCHHHHHHHHHCCCeEEEECCCCCcCCCchhHHHHHHHHHcCCeEEEeecCCCCCC----CHHHHHHHHHHHH
Confidence 489999999999999999999999999997431 2367788899999999999886665 4789998888885
Q ss_pred hcCCCcEEEEcCCCCChHHHHHHHHHHH
Q 028110 138 DVRNHPVLIHCKRGKHRTGCLVGCLRKL 165 (213)
Q Consensus 138 d~~~~PVLVHC~~Gk~RTG~vva~yl~~ 165 (213)
+..++|||+||++|.+|||+|+|||+..
T Consensus 338 ~slpkPVLvHCKSGarRAGamvA~yl~~ 365 (986)
T PLN02727 338 DSSKKPIYLHSKEGVWRTSAMVSRWKQY 365 (986)
T ss_pred hhcCCCEEEECCCCCchHHHHHHHHHHH
Confidence 6678999999999999999999999984
No 13
>COG3453 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.68 E-value=7.5e-16 Score=118.46 Aligned_cols=113 Identities=19% Similarity=0.216 Sum_probs=93.5
Q ss_pred ccccccceEEcCCCChhcHHHHHhcCCcEEEEcCCCCC------CCchHhHhhhCCceEEEeeecCCCCCCCCCCHHHHH
Q 028110 57 FSMVDNGIFRSGFPDSANFSFLQTLRLRSIIYLCPEPY------PEANTEFLKSNGIKLFQFAIEGHKEPFVNIPEDMIR 130 (213)
Q Consensus 57 f~~V~~~Lyrs~~p~~~~~~~L~~lGIktVI~Lr~e~~------~~~~~~~~~~~Gi~~~~ipi~d~~~p~~~i~~~~i~ 130 (213)
+..|++.|+.|+|++..++..|+.+|+|+|||.||+.. ...+.+++++.|+.|.|+|+... .++++.|+
T Consensus 3 i~~I~d~lsVsgQi~~~D~~~iaa~GFksiI~nRPDgEe~~QP~~~~i~~aa~~aGl~y~~iPV~~~-----~iT~~dV~ 77 (130)
T COG3453 3 IRRINDRLSVSGQISPADIASIAALGFKSIICNRPDGEEPGQPGFAAIAAAAEAAGLTYTHIPVTGG-----GITEADVE 77 (130)
T ss_pred ceecccceeecCCCCHHHHHHHHHhccceecccCCCCCCCCCCChHHHHHHHHhcCCceEEeecCCC-----CCCHHHHH
Confidence 56788999999999999999999999999999999621 13578888999999999999986 45688888
Q ss_pred HHHHHHHhcCCCcEEEEcCCCCChHHHHHHHHHHHCCCCHHHHHHH
Q 028110 131 EALKVLLDVRNHPVLIHCKRGKHRTGCLVGCLRKLQKWCLSSVFDE 176 (213)
Q Consensus 131 ~al~~i~d~~~~PVLVHC~~Gk~RTG~vva~yl~~~gws~e~al~e 176 (213)
.+.+.+. ..++|||.||.+|. |+-++-++-....|++.+++.+-
T Consensus 78 ~f~~Al~-eaegPVlayCrsGt-Rs~~ly~~~~~~~gm~~de~~a~ 121 (130)
T COG3453 78 AFQRALD-EAEGPVLAYCRSGT-RSLNLYGLGELDGGMSRDEIEAL 121 (130)
T ss_pred HHHHHHH-HhCCCEEeeecCCc-hHHHHHHHHHHhcCCCHHHHHHH
Confidence 5555554 47899999999996 88776666665679999998763
No 14
>COG2365 Protein tyrosine/serine phosphatase [Signal transduction mechanisms]
Probab=99.66 E-value=1.4e-16 Score=137.85 Aligned_cols=127 Identities=29% Similarity=0.306 Sum_probs=92.8
Q ss_pred CCccccccc-eEEcCCCChhcHH--HHHhcCCcEEEEcCCC-CC----CCc-hHhHhhhCCceEEEeeecCCCCCCCCCC
Q 028110 55 LNFSMVDNG-IFRSGFPDSANFS--FLQTLRLRSIIYLCPE-PY----PEA-NTEFLKSNGIKLFQFAIEGHKEPFVNIP 125 (213)
Q Consensus 55 ~Nf~~V~~~-Lyrs~~p~~~~~~--~L~~lGIktVI~Lr~e-~~----~~~-~~~~~~~~Gi~~~~ipi~d~~~p~~~i~ 125 (213)
++|..+.+. .|||++|.+.+.. +...++++++|+|+.+ .. ... ...+....++....++.... ....
T Consensus 45 ~~~~~i~~~~~~Rs~~p~~~~~~~~~~~~~~l~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~ 120 (249)
T COG2365 45 LNFLGIIPIIDYRSGQPVPVQPDPELLDALYLKTIINLRDESNTNVELYTDHLINWDKAAIIMFESYRSFPT----REDA 120 (249)
T ss_pred cccccccceeEcCCCCcccccCCccccccccccccccccccchhhhhhhhhhhhhhccccchhhhhhccCcc----chhh
Confidence 455555555 9999999987666 8889999999999972 11 111 11112233333333333222 2334
Q ss_pred HHHHHHHHHHHHhcCCCcEEEEcCCCCChHHHHHHHHHHHCCCCHHHHHHHHHhHhcccC
Q 028110 126 EDMIREALKVLLDVRNHPVLIHCKRGKHRTGCLVGCLRKLQKWCLSSVFDEYQRFAAAKA 185 (213)
Q Consensus 126 ~~~i~~al~~i~d~~~~PVLVHC~~Gk~RTG~vva~yl~~~gws~e~al~ey~~~~~~~~ 185 (213)
.+.+.+.+..+++..++|||+||++|++|||+++|+|+++.||+.+++.++|+.+.....
T Consensus 121 ~e~~~~~~~l~~~~e~~PvL~HC~~GkdRTGl~~al~r~~~~~~~~~v~~dyl~~~~~~~ 180 (249)
T COG2365 121 AERLVELLQLLADAENGPVLIHCTAGKDRTGLVAALYRKLVGGSDETVAADYLLTNRYGE 180 (249)
T ss_pred HHHHHHHHHHHhhcccCCEEEecCCCCcchHHHHHHHHHHhCCchhHHHHHHHHcCCccc
Confidence 678888888888866799999999999999999999999999999999999999886643
No 15
>KOG1720 consensus Protein tyrosine phosphatase CDC14 [Defense mechanisms]
Probab=99.63 E-value=6e-15 Score=123.44 Aligned_cols=103 Identities=18% Similarity=0.356 Sum_probs=84.6
Q ss_pred HHHHHhcCCcEEEEcCCCCCCCchHhHhhhCCceEEEeeecCCCCCCCCCCHHHHHHHHHHHHhc-CCCcEEEEcCCCCC
Q 028110 75 FSFLQTLRLRSIIYLCPEPYPEANTEFLKSNGIKLFQFAIEGHKEPFVNIPEDMIREALKVLLDV-RNHPVLIHCKRGKH 153 (213)
Q Consensus 75 ~~~L~~lGIktVI~Lr~e~~~~~~~~~~~~~Gi~~~~ipi~d~~~p~~~i~~~~i~~al~~i~d~-~~~PVLVHC~~Gk~ 153 (213)
+..+++.++++||-|...-|+ ++-+...||.++++|+.|...|. .+.+.++++.+.+. +++.|.|||++|-|
T Consensus 87 ~~~~~~~~v~s~vrln~~~yd---~~~f~~~Gi~h~~l~f~Dg~tP~----~~~v~~fv~i~e~~~~~g~iaVHCkaGlG 159 (225)
T KOG1720|consen 87 IQYFKNNNVTSIVRLNKRLYD---AKRFTDAGIDHHDLFFADGSTPT----DAIVKEFVKIVENAEKGGKIAVHCKAGLG 159 (225)
T ss_pred HHHhhhcccceEEEcCCCCCC---hHHhcccCceeeeeecCCCCCCC----HHHHHHHHHHHHHHHhcCeEEEEeccCCC
Confidence 356778899999999987653 33456789999999999988773 67788888877652 37999999999999
Q ss_pred hHHHHHHHHHHH-CCCCHHHHHHHHHhHhcccC
Q 028110 154 RTGCLVGCLRKL-QKWCLSSVFDEYQRFAAAKA 185 (213)
Q Consensus 154 RTG~vva~yl~~-~gws~e~al~ey~~~~~~~~ 185 (213)
|||+|+|||+|. .|++..++++..+.-+ ++.
T Consensus 160 RTG~liAc~lmy~~g~ta~eaI~~lR~~R-pG~ 191 (225)
T KOG1720|consen 160 RTGTLIACYLMYEYGMTAGEAIAWLRICR-PGA 191 (225)
T ss_pred chhHHHHHHHHHHhCCCHHHHHHHHHhcC-Ccc
Confidence 999999999997 7999999999776655 544
No 16
>PF05706 CDKN3: Cyclin-dependent kinase inhibitor 3 (CDKN3); InterPro: IPR022778 This entry represents a domain found in cyclin-dependent kinase inhibitor 3 or kinase associated phosphatase proteins from several mammalian species. The cyclin-dependent kinase (Cdk)-associated protein phosphatase (KAP) is a human dual specificity protein phosphatase that dephosphorylates Cdk2 on threonine 160 in a cyclin-dependent manner [], []. This domain is also found in MAP kinase phosphatase and esterases. This entry contains both eukaryotic and bacterial proteins.; GO: 0004721 phosphoprotein phosphatase activity, 0004725 protein tyrosine phosphatase activity; PDB: 1FQ1_A 1FPZ_F.
Probab=99.61 E-value=5.4e-15 Score=120.33 Aligned_cols=107 Identities=20% Similarity=0.260 Sum_probs=66.5
Q ss_pred eEEcCCCC----------hhcHHHHHhcCCcEEEEcCCCC----CC-CchHhHhhhCCceEEEeeecCCCCCCCCCCHHH
Q 028110 64 IFRSGFPD----------SANFSFLQTLRLRSIIYLCPEP----YP-EANTEFLKSNGIKLFQFAIEGHKEPFVNIPEDM 128 (213)
Q Consensus 64 Lyrs~~p~----------~~~~~~L~~lGIktVI~Lr~e~----~~-~~~~~~~~~~Gi~~~~ipi~d~~~p~~~i~~~~ 128 (213)
|..+..|. ..|++.|++.|++.||.|.... +. ..+.+.+++.||.|+|+||.|...|. .+.
T Consensus 43 Lglt~~PG~k~~d~~RdL~~DL~~Lk~~G~~~Vvtl~~~~EL~~l~Vp~L~~~~~~~Gi~~~h~PI~D~~aPd----~~~ 118 (168)
T PF05706_consen 43 LGLTFLPGCKFKDWRRDLQADLERLKDWGAQDVVTLLTDHELARLGVPDLGEAAQARGIAWHHLPIPDGSAPD----FAA 118 (168)
T ss_dssp EEEES-TT-EETTEEB-HHHHHHHHHHTT--EEEE-S-HHHHHHTT-TTHHHHHHHTT-EEEE----TTS-------HHH
T ss_pred eeeecCCCcccccccchHHHHHHHHHHCCCCEEEEeCcHHHHHHcCCccHHHHHHHcCCEEEecCccCCCCCC----HHH
Confidence 66777775 3578899999999999998751 11 25677788999999999999998873 333
Q ss_pred HHHHHHHHHh--cCCCcEEEEcCCCCChHHHHHHHHHHHCC--CCHHHHH
Q 028110 129 IREALKVLLD--VRNHPVLIHCKRGKHRTGCLVGCLRKLQK--WCLSSVF 174 (213)
Q Consensus 129 i~~al~~i~d--~~~~PVLVHC~~Gk~RTG~vva~yl~~~g--ws~e~al 174 (213)
+.+++..|.. ..+..|+|||.+|.||||+++||+|..+| ++.++|+
T Consensus 119 ~~~i~~eL~~~L~~g~~V~vHC~GGlGRtGlvAAcLLl~L~~~~~p~~AI 168 (168)
T PF05706_consen 119 AWQILEELAARLENGRKVLVHCRGGLGRTGLVAACLLLELGDTMSPEQAI 168 (168)
T ss_dssp HHHHHHHHHHHHHTT--EEEE-SSSSSHHHHHHHHHHHHH-SSS-HHHHH
T ss_pred HHHHHHHHHHHHHcCCEEEEECCCCCCHHHHHHHHHHHHHcCCCChhhcC
Confidence 4344444332 26789999999999999999999999754 6777664
No 17
>KOG1719 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=99.56 E-value=7.7e-14 Score=112.01 Aligned_cols=108 Identities=15% Similarity=0.321 Sum_probs=88.1
Q ss_pred hcHHHHHhcCCcEEEEcCCCCCCCchHhHhhhCCceEEEeeecCCCCCCCCCCHHHHHHHHHHHHh--cCCCcEEEEcCC
Q 028110 73 ANFSFLQTLRLRSIIYLCPEPYPEANTEFLKSNGIKLFQFAIEGHKEPFVNIPEDMIREALKVLLD--VRNHPVLIHCKR 150 (213)
Q Consensus 73 ~~~~~L~~lGIktVI~Lr~e~~~~~~~~~~~~~Gi~~~~ipi~d~~~p~~~i~~~~i~~al~~i~d--~~~~PVLVHC~~ 150 (213)
.+.+.++.+|++-||.+..+..........++.||++..+|..|..... +.+.|.+++++|.. ..++-|+|||++
T Consensus 42 ~~~~~i~ke~v~gvv~~ne~yE~~a~s~~wk~~giE~L~i~T~D~~~~P---s~~~i~~aVeFi~k~asLGktvYVHCKA 118 (183)
T KOG1719|consen 42 MDVPLIKKENVGGVVTLNEPYELLAPSNLWKNYGIEFLVIPTRDYTGAP---SLENIQKAVEFIHKNASLGKTVYVHCKA 118 (183)
T ss_pred ccchHHHhcCCCeEEEeCCchhhhhhhHHHHhccceeEEeccccccCCC---CHHHHHHHHHHHHhccccCCeEEEEecC
Confidence 5778999999999999998632222223457899999999999975422 47889999999986 357889999999
Q ss_pred CCChHHHHHHHHHHH-CCCCHHHHHHHHHhHhcc
Q 028110 151 GKHRTGCLVGCLRKL-QKWCLSSVFDEYQRFAAA 183 (213)
Q Consensus 151 Gk~RTG~vva~yl~~-~gws~e~al~ey~~~~~~ 183 (213)
|.+|+.++++|||+. .+|+.++|++..+..++.
T Consensus 119 GRtRSaTvV~cYLmq~~~wtpe~A~~~vr~iRp~ 152 (183)
T KOG1719|consen 119 GRTRSATVVACYLMQHKNWTPEAAVEHVRKIRPR 152 (183)
T ss_pred CCccchhhhhhhhhhhcCCCHHHHHHHHHhcCcc
Confidence 999999999999997 799999999877776543
No 18
>KOG1718 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=99.56 E-value=4.8e-14 Score=114.61 Aligned_cols=133 Identities=14% Similarity=0.166 Sum_probs=96.6
Q ss_pred CCCccccccceEEcCCCChhcHHHHHhcCCcEEEEcCCCCCCCchHhHhhhCCceEEEeeecCCCCCCCCCCHHHHHHHH
Q 028110 54 PLNFSMVDNGIFRSGFPDSANFSFLQTLRLRSIIYLCPEPYPEANTEFLKSNGIKLFQFAIEGHKEPFVNIPEDMIREAL 133 (213)
Q Consensus 54 ~~Nf~~V~~~Lyrs~~p~~~~~~~L~~lGIktVI~Lr~e~~~~~~~~~~~~~Gi~~~~ipi~d~~~p~~~i~~~~i~~al 133 (213)
...+++|.++||.|.-..+.+-..|+..||+.|||...|.+... -.|++|..+|++|..........+.+...+
T Consensus 14 ~~~~SqIt~sLfl~~GvaA~~k~~l~~~~It~IiNat~E~pn~~------l~~~qy~kv~~~D~p~~~l~~hfD~vAD~I 87 (198)
T KOG1718|consen 14 IGGMSQITPSLFLSNGVAANDKLLLKKRKITCIINATTEVPNTS------LPDIQYMKVPLEDTPQARLYDHFDPVADKI 87 (198)
T ss_pred ccchhhcCcceeEeccccccCHHHHHhcCceEEEEcccCCCCcc------CCCceeEEEEcccCCcchhhhhhhHHHHHH
Confidence 35689999999999666677788999999999999999854322 258999999999973321100112233333
Q ss_pred HHHHhcCCCcEEEEcCCCCChHHHHHHHHHHH-CCCCHHHHHHHHHhHhcccCC---chHHHHHH
Q 028110 134 KVLLDVRNHPVLIHCKRGKHRTGCLVGCLRKL-QKWCLSSVFDEYQRFAAAKAR---VSDQRFME 194 (213)
Q Consensus 134 ~~i~d~~~~PVLVHC~~Gk~RTG~vva~yl~~-~gws~e~al~ey~~~~~~~~~---~~~~~fie 194 (213)
+.+. .++|.+||||.+|.+|+..++.+||+. +++++-+|+.-... .++..| ..++|.|.
T Consensus 88 ~~v~-~~gG~TLvHC~AGVSRSAsLClAYLmK~~~msLreAy~~vKa-~RpiIRPN~GFw~QLi~ 150 (198)
T KOG1718|consen 88 HSVI-MRGGKTLVHCVAGVSRSASLCLAYLMKYHCMSLREAYHWVKA-RRPIIRPNVGFWRQLID 150 (198)
T ss_pred HHHH-hcCCcEEEEEccccchhHHHHHHHHHHHccchHHHHHHHHHh-hCceeCCCccHHHHHHH
Confidence 3332 378999999999999999999999985 89999999975544 555443 35555553
No 19
>KOG1716 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=99.52 E-value=1.4e-13 Score=121.19 Aligned_cols=137 Identities=16% Similarity=0.249 Sum_probs=106.2
Q ss_pred CCCccccccceEEcCCCChhcHHHHHhcCCcEEEEcCCCCCCCchHhHhhhCCceEEEeeecCCCCCCCCCCHHHHHHHH
Q 028110 54 PLNFSMVDNGIFRSGFPDSANFSFLQTLRLRSIIYLCPEPYPEANTEFLKSNGIKLFQFAIEGHKEPFVNIPEDMIREAL 133 (213)
Q Consensus 54 ~~Nf~~V~~~Lyrs~~p~~~~~~~L~~lGIktVI~Lr~e~~~~~~~~~~~~~Gi~~~~ipi~d~~~p~~~i~~~~i~~al 133 (213)
..+...|.++||.|+...+.+...|+.+||++|+|+........ +....+++|.++|+.|.... +|.. .+.+++
T Consensus 72 ~~~~~~i~p~l~lg~~~~~~~~~~l~~~~it~vln~~~~~~~~~---~~~~~~~~y~~i~~~D~~~~--~i~~-~~~~~~ 145 (285)
T KOG1716|consen 72 GNPIVEILPNLYLGSQGVASDPDLLKKLGITHVLNVSSSCPNPR---FLKEQGIKYLRIPVEDNPST--DILQ-HFPEAI 145 (285)
T ss_pred cCCceeecCCceecCcccccchhhHHHcCCCEEEEecccCCccc---cccccCceEEeccccCCccc--cHHH-HHHHHH
Confidence 36788999999999999999999999999999999988743211 22334899999999995332 3332 466677
Q ss_pred HHHHh--cCCCcEEEEcCCCCChHHHHHHHHHHH-CCCCHHHHHHHHHhHhcccCCchHHHHHHHhcc
Q 028110 134 KVLLD--VRNHPVLIHCKRGKHRTGCLVGCLRKL-QKWCLSSVFDEYQRFAAAKARVSDQRFMELFDI 198 (213)
Q Consensus 134 ~~i~d--~~~~PVLVHC~~Gk~RTG~vva~yl~~-~gws~e~al~ey~~~~~~~~~~~~~~fie~f~~ 198 (213)
++|.. ..++.|||||.+|.+|+.+++.+|+|. .||++++|++.+...+ +... ++..|+.++..
T Consensus 146 ~fI~~a~~~~~~vlVHC~~GvSRSat~viAYlM~~~~~~l~~A~~~vk~~R-~~i~-PN~gf~~QL~~ 211 (285)
T KOG1716|consen 146 SFIEKAREKGGKVLVHCQAGVSRSATLVIAYLMKYEGLSLEDAYELVKSRR-PIIS-PNFGFLRQLLE 211 (285)
T ss_pred HHHHHHHhCCCeEEEEcCCccchhHHHHHHHHHHHcCCCHHHHHHHHHHhC-CccC-CCHHHHHHHHH
Confidence 77654 368999999999999999999999996 7999999999777754 4332 47677666543
No 20
>KOG1717 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=99.45 E-value=4.1e-13 Score=116.12 Aligned_cols=129 Identities=18% Similarity=0.273 Sum_probs=100.4
Q ss_pred ccccceEEcCCCChhcHHHHHhcCCcEEEEcCCCCCCCchHhHhhhCCceEEEeeecCCCCCCCCCCHHHHHHHHHHHHh
Q 028110 59 MVDNGIFRSGFPDSANFSFLQTLRLRSIIYLCPEPYPEANTEFLKSNGIKLFQFAIEGHKEPFVNIPEDMIREALKVLLD 138 (213)
Q Consensus 59 ~V~~~Lyrs~~p~~~~~~~L~~lGIktVI~Lr~e~~~~~~~~~~~~~Gi~~~~ipi~d~~~p~~~i~~~~i~~al~~i~d 138 (213)
+|.+.||.|++-++.+..-|+++||++|||+++..+...+ +...+.|.+|||.|.... +++ ..+.+++.+|.+
T Consensus 174 ~ilp~LYLg~a~ds~NldvLkk~gI~yviNVTpnlpn~fe----~~g~f~YkqipisDh~Sq--nls-~ffpEAIsfIde 246 (343)
T KOG1717|consen 174 EILPNLYLGCAKDSTNLDVLKKYGIKYVINVTPNLPNNFE----NNGEFIYKQIPISDHASQ--NLS-QFFPEAISFIDE 246 (343)
T ss_pred hhccchhcccccccccHHHHHhcCceEEEecCCCCcchhh----cCCceeEEeeeccchhhh--hhh-hhhHHHHHHHHH
Confidence 6788999999999999999999999999999997432111 124578999999996432 122 356778888877
Q ss_pred c--CCCcEEEEcCCCCChHHHHHHHHHHH-CCCCHHHHHHHHHhHhcccCCchHHHHHHHh
Q 028110 139 V--RNHPVLIHCKRGKHRTGCLVGCLRKL-QKWCLSSVFDEYQRFAAAKARVSDQRFMELF 196 (213)
Q Consensus 139 ~--~~~PVLVHC~~Gk~RTG~vva~yl~~-~gws~e~al~ey~~~~~~~~~~~~~~fie~f 196 (213)
. ++.-|||||-+|++|+-+|++.|||. +..++.+|++-+++..... .++-.||-++
T Consensus 247 Arsk~cgvLVHClaGISRSvTvtvaYLMqkl~lslndAyd~Vk~kksni--sPNFnFMgQL 305 (343)
T KOG1717|consen 247 ARSKNCGVLVHCLAGISRSVTVTVAYLMQKLNLSLNDAYDFVKHKKSNI--SPNFNFMGQL 305 (343)
T ss_pred hhccCCcEEEeeeccccchhHHHHHHHHHHhccchhhHHHHHHHhccCC--CCCcchhHHH
Confidence 4 57789999999999999999999995 7999999999777754442 3556666544
No 21
>COG2453 CDC14 Predicted protein-tyrosine phosphatase [Signal transduction mechanisms]
Probab=99.34 E-value=9.6e-12 Score=102.65 Aligned_cols=77 Identities=16% Similarity=0.297 Sum_probs=63.1
Q ss_pred hhhCCceEEEeeecCCCCCCCCCCHHHHHHHHHHHHh--cCCCcEEEEcCCCCChHHHHHHHHHHH--CCCCHHHHHHHH
Q 028110 102 LKSNGIKLFQFAIEGHKEPFVNIPEDMIREALKVLLD--VRNHPVLIHCKRGKHRTGCLVGCLRKL--QKWCLSSVFDEY 177 (213)
Q Consensus 102 ~~~~Gi~~~~ipi~d~~~p~~~i~~~~i~~al~~i~d--~~~~PVLVHC~~Gk~RTG~vva~yl~~--~gws~e~al~ey 177 (213)
....|+.+.++|+.|...|. ..++.+++.+|.+ .+++.|+|||.+|.+|||+++++|+++ .++..+++++.+
T Consensus 68 ~~~~~~~~~~~~~~D~~~p~----~~~l~~~v~~i~~~~~~g~kVvVHC~~GigRSgtviaA~lm~~~~~~~~~~~i~~~ 143 (180)
T COG2453 68 EENDGIQVLHLPILDGTVPD----LEDLDKIVDFIEEALSKGKKVVVHCQGGIGRSGTVIAAYLMLYGGLSLADEAIAVK 143 (180)
T ss_pred eccCCceeeeeeecCCCCCc----HHHHHHHHHHHHHHHhcCCeEEEEcCCCCchHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 34689999999999988774 4678888888876 356699999999999999999999996 478888888866
Q ss_pred HhHhc
Q 028110 178 QRFAA 182 (213)
Q Consensus 178 ~~~~~ 182 (213)
++-++
T Consensus 144 ~~~r~ 148 (180)
T COG2453 144 RRRRP 148 (180)
T ss_pred HhcCC
Confidence 66543
No 22
>KOG2836 consensus Protein tyrosine phosphatase IVA1 [Signal transduction mechanisms]
Probab=99.20 E-value=3.7e-10 Score=89.11 Aligned_cols=138 Identities=14% Similarity=0.238 Sum_probs=102.0
Q ss_pred eEEcCCCChhcH----HHHHhcCCcEEEEcCCCCCCCchHhHhhhCCceEEEeeecCCCCCCCCCCHHHHHHHHHHHH--
Q 028110 64 IFRSGFPDSANF----SFLQTLRLRSIIYLCPEPYPEANTEFLKSNGIKLFQFAIEGHKEPFVNIPEDMIREALKVLL-- 137 (213)
Q Consensus 64 Lyrs~~p~~~~~----~~L~~lGIktVI~Lr~e~~~~~~~~~~~~~Gi~~~~ipi~d~~~p~~~i~~~~i~~al~~i~-- 137 (213)
+.....|+...+ ..|+..|++|||-+|...|. ...+++.||.....|.+|...|. ...+..-+.++.
T Consensus 19 FLIThnPtnaTln~fieELkKygvttvVRVCe~TYd---t~~lek~GI~Vldw~f~dg~ppp----~qvv~~w~~l~~~~ 91 (173)
T KOG2836|consen 19 FLITHNPTNATLNKFIEELKKYGVTTVVRVCEPTYD---TTPLEKEGITVLDWPFDDGAPPP----NQVVDDWLSLVKTK 91 (173)
T ss_pred EEEecCCCchhHHHHHHHHHhcCCeEEEEecccccC---CchhhhcCceEeecccccCCCCc----hHHHHHHHHHHHHH
Confidence 557778876543 57889999999999997664 34467899999999999965553 233333344333
Q ss_pred --hcCCCcEEEEcCCCCChHHHHHHHHHHHCCCCHHHHHHHHHhHhcccCCchHHHHHHHhcc-cccccCCCCC
Q 028110 138 --DVRNHPVLIHCKRGKHRTGCLVGCLRKLQKWCLSSVFDEYQRFAAAKARVSDQRFMELFDI-SSLKHLPMSF 208 (213)
Q Consensus 138 --d~~~~PVLVHC~~Gk~RTG~vva~yl~~~gws~e~al~ey~~~~~~~~~~~~~~fie~f~~-~~~~~~~~~~ 208 (213)
+..+.-|.|||.+|.||..+++|+-|+-.|+..++|+.-.+..++.-...-+-.|+|.+.- -.|++.-.+.
T Consensus 92 f~e~p~~cvavhcvaglgrapvlvalalie~gmkyedave~ir~krrga~n~kql~~lekyrpk~rlr~k~~~g 165 (173)
T KOG2836|consen 92 FREEPGCCVAVHCVAGLGRAPVLVALALIEAGMKYEDAVEMIRQKRRGAINSKQLLYLEKYRPKMRLRFKDPNG 165 (173)
T ss_pred HhhCCCCeEEEEeecccCcchHHHHHHHHHccccHHHHHHHHHHHhhccccHHHHHHHHHhCccceeeccCCCC
Confidence 2345669999999999999999999999999999999877776666445566778887764 4555554443
No 23
>smart00012 PTPc_DSPc Protein tyrosine phosphatase, catalytic domain, undefined specificity. Protein tyrosine phosphatases. Homologues detected by this profile and not by those of "PTPc" or "DSPc" are predicted to be protein phosphatases with a similar fold to DSPs and PTPs, yet with unpredicted specificities.
Probab=98.92 E-value=4.4e-09 Score=77.02 Aligned_cols=72 Identities=25% Similarity=0.304 Sum_probs=50.9
Q ss_pred EEEeeecCCCCCCCCCCHHHHHHHHHHHHhc-----CCCcEEEEcCCCCChHHHHHHHHHHHC----C---CCHHHHHHH
Q 028110 109 LFQFAIEGHKEPFVNIPEDMIREALKVLLDV-----RNHPVLIHCKRGKHRTGCLVGCLRKLQ----K---WCLSSVFDE 176 (213)
Q Consensus 109 ~~~ipi~d~~~p~~~i~~~~i~~al~~i~d~-----~~~PVLVHC~~Gk~RTG~vva~yl~~~----g---ws~e~al~e 176 (213)
+.+.+..+...|. ..+.+.++++.+.+. .++||+|||.+|.+|||+++++|++.. + .+..+++..
T Consensus 5 ~~~~~Wpd~~~P~---~~~~~~~~~~~v~~~~~~~~~~~pvlVHC~~G~gRtg~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (105)
T smart00012 5 YHYTGWPDHGVPE---SPDSILEFLRAVKKNLNQSSSSGPVVVHCSAGVGRTGTFVALDILLQQLESETGEVDIFQTVKE 81 (105)
T ss_pred EeeCCCCCCCCCC---CHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCCCChhhHHHHHHHHHHHHHhcCCCCCHHHHHHH
Confidence 4445555555453 235666677766542 268999999999999999999999853 2 577788888
Q ss_pred HHhHhcc
Q 028110 177 YQRFAAA 183 (213)
Q Consensus 177 y~~~~~~ 183 (213)
++..+..
T Consensus 82 ir~~r~~ 88 (105)
T smart00012 82 LRKQRPG 88 (105)
T ss_pred HHhhhhh
Confidence 7776544
No 24
>smart00404 PTPc_motif Protein tyrosine phosphatase, catalytic domain motif.
Probab=98.92 E-value=4.4e-09 Score=77.02 Aligned_cols=72 Identities=25% Similarity=0.304 Sum_probs=50.9
Q ss_pred EEEeeecCCCCCCCCCCHHHHHHHHHHHHhc-----CCCcEEEEcCCCCChHHHHHHHHHHHC----C---CCHHHHHHH
Q 028110 109 LFQFAIEGHKEPFVNIPEDMIREALKVLLDV-----RNHPVLIHCKRGKHRTGCLVGCLRKLQ----K---WCLSSVFDE 176 (213)
Q Consensus 109 ~~~ipi~d~~~p~~~i~~~~i~~al~~i~d~-----~~~PVLVHC~~Gk~RTG~vva~yl~~~----g---ws~e~al~e 176 (213)
+.+.+..+...|. ..+.+.++++.+.+. .++||+|||.+|.+|||+++++|++.. + .+..+++..
T Consensus 5 ~~~~~Wpd~~~P~---~~~~~~~~~~~v~~~~~~~~~~~pvlVHC~~G~gRtg~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (105)
T smart00404 5 YHYTGWPDHGVPE---SPDSILEFLRAVKKNLNQSSSSGPVVVHCSAGVGRTGTFVALDILLQQLESETGEVDIFQTVKE 81 (105)
T ss_pred EeeCCCCCCCCCC---CHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCCCChhhHHHHHHHHHHHHHhcCCCCCHHHHHHH
Confidence 4445555555453 235666677766542 268999999999999999999999853 2 577788888
Q ss_pred HHhHhcc
Q 028110 177 YQRFAAA 183 (213)
Q Consensus 177 y~~~~~~ 183 (213)
++..+..
T Consensus 82 ir~~r~~ 88 (105)
T smart00404 82 LRKQRPG 88 (105)
T ss_pred HHhhhhh
Confidence 7776544
No 25
>PF14566 PTPlike_phytase: Inositol hexakisphosphate; PDB: 1U24_A 2PSZ_B 3MOZ_A 3D1H_B 2B4P_B 3D1Q_A 2B4O_A 3MMJ_B 1U25_A 1U26_B ....
Probab=98.86 E-value=8.4e-09 Score=82.78 Aligned_cols=65 Identities=18% Similarity=0.468 Sum_probs=49.7
Q ss_pred chHhHhhhCCceEEEeeecCCCCCCCCCCHHHHHHHHHHHHhc-CCCcEEEEcCCCCChHHHHHHHHHHH
Q 028110 97 ANTEFLKSNGIKLFQFAIEGHKEPFVNIPEDMIREALKVLLDV-RNHPVLIHCKRGKHRTGCLVGCLRKL 165 (213)
Q Consensus 97 ~~~~~~~~~Gi~~~~ipi~d~~~p~~~i~~~~i~~al~~i~d~-~~~PVLVHC~~Gk~RTG~vva~yl~~ 165 (213)
.+.+.++..|+.|+++|+.|...| .++.|.++++++.+. .+..+.|||.+|+|||.++.++|.++
T Consensus 83 ~e~~~~~~~g~~Y~Ripitd~~~P----~~~~iD~fi~~v~~~p~~~~l~fhC~~G~GRTTt~Mv~~~li 148 (149)
T PF14566_consen 83 TEEELVEGNGLRYYRIPITDHQAP----DPEDIDAFINFVKSLPKDTWLHFHCQAGRGRTTTFMVMYDLI 148 (149)
T ss_dssp -HHHHHHHTT-EEEEEEE-TTS-------HHHHHHHHHHHHTS-TT-EEEEE-SSSSHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCceEEEEeCCCcCCC----CHHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 346667889999999999999887 478899999999874 46789999999999999999888764
No 26
>KOG2386 consensus mRNA capping enzyme, guanylyltransferase (alpha) subunit [RNA processing and modification]
Probab=98.57 E-value=1.8e-07 Score=85.55 Aligned_cols=133 Identities=18% Similarity=0.267 Sum_probs=88.9
Q ss_pred cHHHHHhcC--CcEEEEcCCCCCCCchHhHhhhCCceEEEeeecCCCC-CCCCCCHHHHHHHHHHHHh-c--CCCcEEEE
Q 028110 74 NFSFLQTLR--LRSIIYLCPEPYPEANTEFLKSNGIKLFQFAIEGHKE-PFVNIPEDMIREALKVLLD-V--RNHPVLIH 147 (213)
Q Consensus 74 ~~~~L~~lG--IktVI~Lr~e~~~~~~~~~~~~~Gi~~~~ipi~d~~~-p~~~i~~~~i~~al~~i~d-~--~~~PVLVH 147 (213)
.+..|+++| |.-+|||....... .....+..|+.|+.+...+... |. +...+.+.++++-..+ . .+.=|+||
T Consensus 53 l~~~l~~~~~~vgl~iDltnt~ryy-~~~~~~~~g~~Y~K~~c~g~~~vp~-~~~v~~fv~~v~~f~~~~~~~~~LI~vh 130 (393)
T KOG2386|consen 53 LFELLKEHNYKVGLKIDLTNTLRYY-DKPELEERGVKYLKRNCPGRGVVPR-TELVDKFVKLVKGFVDDTKLDDELIGVH 130 (393)
T ss_pred HHHHHHhcCceEEEEEeccceeeee-ccccccccceeEEEeccCCcccCCC-ccchHHHHHHHHHHHhcccCCCCEEEEe
Confidence 456777665 77899998752211 2333467899999998888753 32 1122222223332222 1 24459999
Q ss_pred cCCCCChHHHHHHHHHHH-CCCCHHHHHHHHHhHhcccCCchHHHHHHHhcccccccCCCCCCc
Q 028110 148 CKRGKHRTGCLVGCLRKL-QKWCLSSVFDEYQRFAAAKARVSDQRFMELFDISSLKHLPMSFSC 210 (213)
Q Consensus 148 C~~Gk~RTG~vva~yl~~-~gws~e~al~ey~~~~~~~~~~~~~~fie~f~~~~~~~~~~~~~~ 210 (213)
|++|++|||.++..||+. .+|+.++|++.+..++.+. .-.+.||..+....-..-|-+.||
T Consensus 131 cthG~NrtgyLI~~yL~~~~~~s~~~aik~f~~~r~~g--i~k~dyi~~L~~~~~~~~p~~vs~ 192 (393)
T KOG2386|consen 131 CTHGLNRTGYLICAYLADVGGYSSSEAIKRFADARPPG--IEKQDYIDALYSRYHDIFPFKVSC 192 (393)
T ss_pred CCCcccccceeeeeeeeeccCccHHHHHHHHHHhCCCc--cCchHHHHHHhhcccccccccccC
Confidence 999999999999999996 6899999999999987664 355667776666555555555544
No 27
>cd00047 PTPc Protein tyrosine phosphatases (PTP) catalyze the dephosphorylation of phosphotyrosine peptides; they regulate phosphotyrosine levels in signal transduction pathways. The depth of the active site cleft renders the enzyme specific for phosphorylated Tyr (pTyr) residues, instead of pSer or pThr. This family has a distinctive active site signature motif, HCSAGxGRxG. Characterized as either transmembrane, receptor-like or non-transmembrane (soluble) PTPs. Receptor-like PTP domains tend to occur in two copies in the cytoplasmic region of the transmembrane proteins, only one copy may be active.
Probab=98.56 E-value=4.4e-07 Score=76.73 Aligned_cols=57 Identities=19% Similarity=0.307 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHhc----CCCcEEEEcCCCCChHHHHHHHHHHH------CCCCHHHHHHHHHhHhcc
Q 028110 127 DMIREALKVLLDV----RNHPVLIHCKRGKHRTGCLVGCLRKL------QKWCLSSVFDEYQRFAAA 183 (213)
Q Consensus 127 ~~i~~al~~i~d~----~~~PVLVHC~~Gk~RTG~vva~yl~~------~gws~e~al~ey~~~~~~ 183 (213)
+.+.++++.+... .++||+|||.+|.+|||+++|+++.+ ..++..+++...+..+..
T Consensus 148 ~~~~~~~~~v~~~~~~~~~~pivVHC~~G~gRsg~~~a~~~~~~~~~~~~~~~~~~~v~~iR~~R~~ 214 (231)
T cd00047 148 DSLLDLLRKVRKSQQQPGSGPIVVHCSAGVGRTGTFIAIDILLQRLEAEGVVDIFQTVKELRSQRPG 214 (231)
T ss_pred HHHHHHHHHHHHHhccCCCCCeEEECCCCCCccchHHHHHHHHHHHHhcCCCCHHHHHHHHHhcccc
Confidence 5566677766553 36899999999999999999998764 258999999999887654
No 28
>KOG2283 consensus Clathrin coat dissociation kinase GAK/PTEN/Auxilin and related tyrosine phosphatases [Signal transduction mechanisms; General function prediction only]
Probab=98.53 E-value=1.2e-07 Score=88.01 Aligned_cols=143 Identities=19% Similarity=0.293 Sum_probs=94.3
Q ss_pred ccccccceEEcCCCChh----------c-HHHHHhc--CCcEEEEcCCCCCCCchHhHhhhCCceEEEeeecCCCCCCCC
Q 028110 57 FSMVDNGIFRSGFPDSA----------N-FSFLQTL--RLRSIIYLCPEPYPEANTEFLKSNGIKLFQFAIEGHKEPFVN 123 (213)
Q Consensus 57 f~~V~~~Lyrs~~p~~~----------~-~~~L~~l--GIktVI~Lr~e~~~~~~~~~~~~~Gi~~~~ipi~d~~~p~~~ 123 (213)
...|...|-.++.|... + ..+|... |--.|.||+.|..++. .. .-=+...+|+.|...|.
T Consensus 15 ltYIT~rIIamsfPa~~~es~yRN~l~dV~~fL~s~H~~~y~vyNL~~er~yd~-~~----f~g~V~~~~~~Dh~~P~-- 87 (434)
T KOG2283|consen 15 LTYITSRIIAMSFPAEGIESLYRNNLEDVVLFLDSKHKDHYKVYNLSSERLYDP-SR----FHGRVARFGFDDHNPPP-- 87 (434)
T ss_pred ceeeeeeEEEEeCCCCcchhhhcCCHHHHHHHHhhccCCceEEEecCccccCCc-cc----cccceeecCCCCCCCCc--
Confidence 34455565566666431 2 2466533 5566999997533221 11 12256668999988774
Q ss_pred CCHHHHHHHHH----HHHhcCCCcEEEEcCCCCChHHHHHHHHHHHCCC--CHHHHHHHHHhHh---c---ccCCchHHH
Q 028110 124 IPEDMIREALK----VLLDVRNHPVLIHCKRGKHRTGCLVGCLRKLQKW--CLSSVFDEYQRFA---A---AKARVSDQR 191 (213)
Q Consensus 124 i~~~~i~~al~----~i~d~~~~PVLVHC~~Gk~RTG~vva~yl~~~gw--s~e~al~ey~~~~---~---~~~~~~~~~ 191 (213)
.+.+..+.+ ++......-+.|||++|++|||+|+.+||+..|. +.++|++-|...+ . .....++.+
T Consensus 88 --L~~l~~~c~~~~~WL~~d~~nVvvvHCk~Gkgrtg~~icA~L~~~~~~~ta~eald~~~~kR~~~~~~~~~~~PSq~R 165 (434)
T KOG2283|consen 88 --LELLCPFCKSMDNWLSEDPKNVVVVHCKAGKGRTGVMICAYLIYSGISATAEEALDYFNEKRFDEGKSKGVTIPSQRR 165 (434)
T ss_pred --HHHHHHHHHCHHHHHhcCccceEEEEccCCCcceEEEEeHHHHhhhhcCCHHHHHHHHhhhhccccccCCccCchhhH
Confidence 444444443 3333345679999999999999999999998544 6899999888876 2 223578999
Q ss_pred HHHHhcc-cccccCCCCC
Q 028110 192 FMELFDI-SSLKHLPMSF 208 (213)
Q Consensus 192 fie~f~~-~~~~~~~~~~ 208 (213)
|+.+|.. ..-..+|+++
T Consensus 166 Yv~Y~~~~l~~~~~~~~~ 183 (434)
T KOG2283|consen 166 YVGYFSRVLLNGPLPPRS 183 (434)
T ss_pred HHHHHHHHhhcCCcCccc
Confidence 9999988 4444555555
No 29
>smart00194 PTPc Protein tyrosine phosphatase, catalytic domain.
Probab=98.50 E-value=8.4e-07 Score=76.36 Aligned_cols=58 Identities=17% Similarity=0.340 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHhcC---CCcEEEEcCCCCChHHHHHHHHHHH------CCCCHHHHHHHHHhHhcc
Q 028110 126 EDMIREALKVLLDVR---NHPVLIHCKRGKHRTGCLVGCLRKL------QKWCLSSVFDEYQRFAAA 183 (213)
Q Consensus 126 ~~~i~~al~~i~d~~---~~PVLVHC~~Gk~RTG~vva~yl~~------~gws~e~al~ey~~~~~~ 183 (213)
.+.+.++++.+.... ++||+|||.+|.||||+++|++.++ ..++..+++..++..+..
T Consensus 175 ~~~~~~~i~~v~~~~~~~~~pivVHC~~G~gRsg~f~a~~~~~~~l~~~~~v~v~~~v~~lR~~R~~ 241 (258)
T smart00194 175 PKSILDLVRAVRKSQSTSTGPIVVHCSAGVGRTGTFIAIDILLQQLEAGKEVDIFEIVKELRSQRPG 241 (258)
T ss_pred HHHHHHHHHHHHHhhccCCCCEEEEeCCCCCccchhhHHHHHHHHHHHcCCCCHHHHHHHHHhcccc
Confidence 345666666665421 6899999999999999999998763 368999999998887655
No 30
>PHA02742 protein tyrosine phosphatase; Provisional
Probab=98.37 E-value=3.4e-06 Score=75.06 Aligned_cols=45 Identities=20% Similarity=0.337 Sum_probs=36.3
Q ss_pred CCcEEEEcCCCCChHHHHHHHHHHH------CCCCHHHHHHHHHhHhcccC
Q 028110 141 NHPVLIHCKRGKHRTGCLVGCLRKL------QKWCLSSVFDEYQRFAAAKA 185 (213)
Q Consensus 141 ~~PVLVHC~~Gk~RTG~vva~yl~~------~gws~e~al~ey~~~~~~~~ 185 (213)
.+||+|||.+|.||||+++|+...+ .-++..+++...+..+..-.
T Consensus 229 ~~PIvVHCsaGvGRTGtF~aid~~i~~~~~~~~v~v~~~V~~lR~qR~~~V 279 (303)
T PHA02742 229 EPPILVHCSAGLDRAGAFCAIDICISKYNERAIIPLLSIVRDLRKQRHNCL 279 (303)
T ss_pred CCCeEEECCCCCchhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHhhccccc
Confidence 4799999999999999999887764 24588889988888765543
No 31
>PRK15375 pathogenicity island 1 effector protein StpP; Provisional
Probab=98.31 E-value=5.2e-06 Score=78.15 Aligned_cols=54 Identities=22% Similarity=0.338 Sum_probs=41.8
Q ss_pred EEEEcCCCCChHHHHHHHHHHH-C-CCCHHHHHHHHHhHhcccCCchHHHHHHHhc
Q 028110 144 VLIHCKRGKHRTGCLVGCLRKL-Q-KWCLSSVFDEYQRFAAAKARVSDQRFMELFD 197 (213)
Q Consensus 144 VLVHC~~Gk~RTG~vva~yl~~-~-gws~e~al~ey~~~~~~~~~~~~~~fie~f~ 197 (213)
.+|||++|.||||+++|++++. . -.++++++.+++..+...-....++|..+..
T Consensus 469 PVVHCSAGVGRTGTFIAi~llk~~~~~sle~IV~dlR~qRng~MVQt~eQy~~l~~ 524 (535)
T PRK15375 469 PMIHCLGGVGRTGTMAAALVLKDNPHSNLEQVRADFRNSRNNRMLEDASQFVQLKA 524 (535)
T ss_pred ceEEcCCCCchHHHHHHHHHHhccccCCHHHHHHHHHhcCCccccccHHHHHHHHH
Confidence 3799999999999999999875 2 4699999999999876633345566654443
No 32
>PHA02740 protein tyrosine phosphatase; Provisional
Probab=98.30 E-value=7.7e-06 Score=72.73 Aligned_cols=45 Identities=9% Similarity=0.118 Sum_probs=36.8
Q ss_pred CCcEEEEcCCCCChHHHHHHHHHHH------CCCCHHHHHHHHHhHhcccC
Q 028110 141 NHPVLIHCKRGKHRTGCLVGCLRKL------QKWCLSSVFDEYQRFAAAKA 185 (213)
Q Consensus 141 ~~PVLVHC~~Gk~RTG~vva~yl~~------~gws~e~al~ey~~~~~~~~ 185 (213)
.+||+|||++|.||||+++|+...+ ..++..+++...+.-+..-.
T Consensus 221 ~~PIVVHCSaGvGRTGtFcaiDi~l~~~~~~~~vdi~~~V~~lR~qR~~~V 271 (298)
T PHA02740 221 IAPIIIDCIDGISSSAVFCVFDICATEFDKTGMLSIANALKKVRQKKYGCM 271 (298)
T ss_pred CCCEEEECCCCCchhHHHHHHHHHHHHHHhcCcccHHHHHHHHHhhCcccc
Confidence 5799999999999999999887653 35688899988888765543
No 33
>PHA02746 protein tyrosine phosphatase; Provisional
Probab=98.22 E-value=9.7e-06 Score=72.79 Aligned_cols=44 Identities=20% Similarity=0.489 Sum_probs=36.0
Q ss_pred CcEEEEcCCCCChHHHHHHHHHHH------CCCCHHHHHHHHHhHhcccC
Q 028110 142 HPVLIHCKRGKHRTGCLVGCLRKL------QKWCLSSVFDEYQRFAAAKA 185 (213)
Q Consensus 142 ~PVLVHC~~Gk~RTG~vva~yl~~------~gws~e~al~ey~~~~~~~~ 185 (213)
+||+|||.+|.||||+++|+...+ ..++..+++..++..+....
T Consensus 248 ~PIvVHCsaGvGRTGtfcaid~~l~~l~~~~~vdv~~~V~~lR~qR~~~V 297 (323)
T PHA02746 248 GPIVVHCSAGIGRAGTFCAIDNALEQLEKEKEVCLGEIVLKIRKQRHSSV 297 (323)
T ss_pred CCEEEEcCCCCCcchhHHHHHHHHHHHHhcCCCCHHHHHHHHHhcccccC
Confidence 799999999999999999976642 35788899988888765533
No 34
>PHA02747 protein tyrosine phosphatase; Provisional
Probab=98.21 E-value=1e-05 Score=72.30 Aligned_cols=52 Identities=23% Similarity=0.447 Sum_probs=39.1
Q ss_pred CcEEEEcCCCCChHHHHHHHHHHH------CCCCHHHHHHHHHhHhcccC-CchHHHHH
Q 028110 142 HPVLIHCKRGKHRTGCLVGCLRKL------QKWCLSSVFDEYQRFAAAKA-RVSDQRFM 193 (213)
Q Consensus 142 ~PVLVHC~~Gk~RTG~vva~yl~~------~gws~e~al~ey~~~~~~~~-~~~~~~fi 193 (213)
+||+|||.+|.||||+++|+...+ .-.+..+++...++.+..-. +..+..|+
T Consensus 230 ~PIvVHCsaGvGRtGtfcaidi~i~~l~~~~~v~v~~~V~~lR~qR~~~Vqt~~QY~F~ 288 (312)
T PHA02747 230 CPIVVHCSDGVGKTGIFCAVDICLNQLVKRKAICLAKTAEKIREQRHAGIMNFDDYLFI 288 (312)
T ss_pred CCEEEEecCCCcchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHhccccccCCHHHHHHH
Confidence 799999999999999999987642 35688888888888765533 23444554
No 35
>PHA02738 hypothetical protein; Provisional
Probab=98.09 E-value=2.7e-05 Score=69.87 Aligned_cols=45 Identities=18% Similarity=0.326 Sum_probs=36.5
Q ss_pred CCcEEEEcCCCCChHHHHHHHHHHH------CCCCHHHHHHHHHhHhcccC
Q 028110 141 NHPVLIHCKRGKHRTGCLVGCLRKL------QKWCLSSVFDEYQRFAAAKA 185 (213)
Q Consensus 141 ~~PVLVHC~~Gk~RTG~vva~yl~~------~gws~e~al~ey~~~~~~~~ 185 (213)
.+||+|||.+|.||||+++|+-..+ .-++..+++...+..+..-.
T Consensus 227 ~~PIVVHCs~GiGRtGtFcaidi~i~~~~~~~~vdv~~~V~~lR~qR~~~v 277 (320)
T PHA02738 227 PPPIVVHCNAGLGRTPCYCVVDISISRFDACATVSIPSIVSSIRNQRYYSL 277 (320)
T ss_pred CCCeEEEcCCCCChhhhhhHHHHHHHHHHhcCCcCHHHHHHHHHhhhhhcc
Confidence 4699999999999999999887643 35688899998888765543
No 36
>PF00102 Y_phosphatase: Protein-tyrosine phosphatase; InterPro: IPR000242 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry repesents several receptor and non-receptor protein-tyrosine phosphatases. Structurally, all known receptor PTPases, are made up of a variable length extracellular domain, followed by a transmembrane region and a C-terminal catalytic cytoplasmic domain. Some of the receptor PTPases contain fibronectin type III (FN-III) repeats, immunoglobulin-like domains, MAM domains or carbonic anhydrase-like domains in their extracellular region. The cytoplasmic region generally contains two copies of the PTPase domain. The first seems to have enzymatic activity, while the second is inactive. The inactive domains of tandem phosphatases can be divided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre []. PTPase domains consist of about 300 amino acids. There are two conserved cysteines, the second one has been shown to be absolutely required for activity. Furthermore, a number of conserved residues in its immediate vicinity have also been shown to be important.; GO: 0004725 protein tyrosine phosphatase activity, 0006470 protein dephosphorylation; PDB: 3O4T_A 3O4S_A 3O4U_A 2A3K_A 2QDP_A 2QDC_A 2QDM_A 2HVL_A 1ZC0_A 3D44_A ....
Probab=97.96 E-value=2.6e-05 Score=65.04 Aligned_cols=57 Identities=12% Similarity=0.269 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHh---cCCCcEEEEcCCCCChHHHHHHHHHHH------CCCCHHHHHHHHHhHhcc
Q 028110 127 DMIREALKVLLD---VRNHPVLIHCKRGKHRTGCLVGCLRKL------QKWCLSSVFDEYQRFAAA 183 (213)
Q Consensus 127 ~~i~~al~~i~d---~~~~PVLVHC~~Gk~RTG~vva~yl~~------~gws~e~al~ey~~~~~~ 183 (213)
..+.++++.+.. ..++|++|||.+|.+|||+++++..++ ...+..+++...+..+..
T Consensus 153 ~~~~~~~~~v~~~~~~~~~pivVhc~~G~gRsg~f~~~~~~~~~~~~~~~~~v~~~~~~lR~~R~~ 218 (235)
T PF00102_consen 153 ESFLDFIRKVNKSKDDPNGPIVVHCSDGVGRSGTFCAIDILIEQLKKEGEVDVFEIVKKLRQQRPG 218 (235)
T ss_dssp HHHHHHHHHHHHHHSTTSSEEEEESSSSSHHHHHHHHHHHHHHHHHHHSEECHHHHHHHHHTTSTT
T ss_pred chhhhhhhhccccccCCccceEeecccccccccccccchhhccccccccchhhHHHHHHHHhhCCC
Confidence 445556666554 247899999999999999999998873 357999999998887654
No 37
>COG5599 PTP2 Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=97.92 E-value=1.3e-05 Score=69.90 Aligned_cols=39 Identities=31% Similarity=0.560 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHhc--CCCcEEEEcCCCCChHHHHHHHHHHH
Q 028110 127 DMIREALKVLLDV--RNHPVLIHCKRGKHRTGCLVGCLRKL 165 (213)
Q Consensus 127 ~~i~~al~~i~d~--~~~PVLVHC~~Gk~RTG~vva~yl~~ 165 (213)
..+.+.++-+.+. ..+|++|||+||.||||+++|+--++
T Consensus 202 ~sl~~~~~sl~~sp~~t~piiVHCSAGvGRTGTFIalD~ll 242 (302)
T COG5599 202 RSLTEVIHSLNDSPVRTGPIIVHCSAGVGRTGTFIALDILL 242 (302)
T ss_pred HHHHHHHHHhhcCcCCCCCEEEEeccCCCCcceeeeHHHHH
Confidence 3455566666653 67999999999999999999987664
No 38
>KOG0792 consensus Protein tyrosine phosphatase PTPMEG, contains FERM domain [Signal transduction mechanisms]
Probab=97.81 E-value=8.1e-05 Score=74.77 Aligned_cols=68 Identities=24% Similarity=0.350 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHhcC---CCcEEEEcCCCCChHHHHHHHHHH----H--CCCCHHHHHHHHHhHhcccC-CchHHHHH
Q 028110 126 EDMIREALKVLLDVR---NHPVLIHCKRGKHRTGCLVGCLRK----L--QKWCLSSVFDEYQRFAAAKA-RVSDQRFM 193 (213)
Q Consensus 126 ~~~i~~al~~i~d~~---~~PVLVHC~~Gk~RTG~vva~yl~----~--~gws~e~al~ey~~~~~~~~-~~~~~~fi 193 (213)
...+..+++.+...+ +-||+|||.+|.||||+++.+=.+ - .-++..+++..++.-+.-.+ +..+..|+
T Consensus 1045 ~~~FL~FleevrsvR~~t~pPilvHCSAGiGRTGVlIl~e~~l~lle~Ne~vdi~divr~mR~QR~~mVQT~~QYkFV 1122 (1144)
T KOG0792|consen 1045 PNDFLDFLEEVRSVRRGTNPPILVHCSAGIGRTGVLILMETALCLLEHNEPVDILDIVRTMRDQRAMMVQTLSQYKFV 1122 (1144)
T ss_pred hHHHHHHHHHHHHHhccCCCCeEEEccCCCCcceehHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhhccchHHhhHH
Confidence 345555666665432 459999999999999998754443 2 47888899988887765544 34555554
No 39
>KOG0791 consensus Protein tyrosine phosphatase, contains fn3 domain [Signal transduction mechanisms]
Probab=97.70 E-value=8.8e-05 Score=67.17 Aligned_cols=34 Identities=35% Similarity=0.642 Sum_probs=27.5
Q ss_pred HHHHHhcCCCcEEEEcCCCCChHHHHHHHHHHHC
Q 028110 133 LKVLLDVRNHPVLIHCKRGKHRTGCLVGCLRKLQ 166 (213)
Q Consensus 133 l~~i~d~~~~PVLVHC~~Gk~RTG~vva~yl~~~ 166 (213)
+....+...+|++|||++|.+|||+++|+-+.++
T Consensus 279 ~r~~~~~~~~p~iVhCSAGVgRTGTFiald~LLq 312 (374)
T KOG0791|consen 279 VRQSLDTSKGPTIVHCSAGVGRTGTFIALDRLLQ 312 (374)
T ss_pred HHhhcccCCCceeEEeecccccccchHhHHHHHH
Confidence 3333344578999999999999999999998863
No 40
>COG5350 Predicted protein tyrosine phosphatase [General function prediction only]
Probab=97.64 E-value=0.00091 Score=54.13 Aligned_cols=120 Identities=13% Similarity=0.171 Sum_probs=70.6
Q ss_pred HHHHhcCCcEEEEcCCCCCCCchHhHhhhCCceEEEeeecCC---CCCCCCCCHHHHHHHHHHHHh-cCCCcEEEEcCCC
Q 028110 76 SFLQTLRLRSIIYLCPEPYPEANTEFLKSNGIKLFQFAIEGH---KEPFVNIPEDMIREALKVLLD-VRNHPVLIHCKRG 151 (213)
Q Consensus 76 ~~L~~lGIktVI~Lr~e~~~~~~~~~~~~~Gi~~~~ipi~d~---~~p~~~i~~~~i~~al~~i~d-~~~~PVLVHC~~G 151 (213)
++..+.|-+.+|.|.....+...+... .--++..+-+.|- +.++.-..+..++..+.|+.+ .+..|+||||.+|
T Consensus 26 e~~~rh~~t~mlsl~a~~t~~~~pa~~--~~erhL~l~fnDI~~~~~g~~ap~e~Hv~~i~DF~~~wp~~apllIHC~aG 103 (172)
T COG5350 26 ETAARHGPTHMLSLLAKGTYFHRPAVI--AAERHLTLHFNDIAEPDDGWIAPGEAHVRAIIDFADEWPRFAPLLIHCYAG 103 (172)
T ss_pred HHHhhcCCceEEEeecccccccCcccc--chhhceeEeeccccCCCccccCCCHHHHHHHHHHHhcCccccceeeeeccc
Confidence 455577899999998742111100000 0012222223221 122222246788989999877 4678999999999
Q ss_pred CChHHHHHHHHH-HH-CCCCHHHHHHHHHhHhcccCCchHHHHHHHhccc
Q 028110 152 KHRTGCLVGCLR-KL-QKWCLSSVFDEYQRFAAAKARVSDQRFMELFDIS 199 (213)
Q Consensus 152 k~RTG~vva~yl-~~-~gws~e~al~ey~~~~~~~~~~~~~~fie~f~~~ 199 (213)
.+|+..++...- .+ -.++..+..+..+.+.+. . .+|.+.|..+|..
T Consensus 104 ISRStA~A~i~a~ala~~~de~ela~~Lra~sp~-a-tPN~RliaI~d~~ 151 (172)
T COG5350 104 ISRSTAAALIAALALAPDMDETELAERLRALSPY-A-TPNPRLIAIADAA 151 (172)
T ss_pred cccchHHHHHHHHhhccccChHHHHHHHHhcCcc-c-CCChhHHHHHHHH
Confidence 999976664422 23 466776666655555432 2 4778888777753
No 41
>KOG0790 consensus Protein tyrosine phosphatase Corkscrew and related SH2 domain enzymes [Signal transduction mechanisms]
Probab=97.23 E-value=0.0004 Score=64.58 Aligned_cols=39 Identities=21% Similarity=0.309 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHhc-----CCCcEEEEcCCCCChHHHHHHHHHH
Q 028110 126 EDMIREALKVLLDV-----RNHPVLIHCKRGKHRTGCLVGCLRK 164 (213)
Q Consensus 126 ~~~i~~al~~i~d~-----~~~PVLVHC~~Gk~RTG~vva~yl~ 164 (213)
+-.+..+|+.+... .-+||.|||++|++|||+++.+-++
T Consensus 431 Pg~vLnFLe~V~~rq~~l~~AgpIvVHCSAGIGrTGTfiViD~l 474 (600)
T KOG0790|consen 431 PGGVLNFLEEVNHRQESLMDAGPIVVHCSAGIGRTGTFIVIDML 474 (600)
T ss_pred ccHHHHHHHHhhhhhccccccCcEEEEccCCcCCcceEEEhHHH
Confidence 34555666665431 3579999999999999988765543
No 42
>KOG0789 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=97.08 E-value=0.0038 Score=56.88 Aligned_cols=41 Identities=24% Similarity=0.407 Sum_probs=29.3
Q ss_pred CCCcEEEEcCCCCChHHHHHHHHHH---H-CC---CCHHHHHHHHHhH
Q 028110 140 RNHPVLIHCKRGKHRTGCLVGCLRK---L-QK---WCLSSVFDEYQRF 180 (213)
Q Consensus 140 ~~~PVLVHC~~Gk~RTG~vva~yl~---~-~g---ws~e~al~ey~~~ 180 (213)
..+|++|||.+|.||||+++++-.+ + .+ .+...++...+.-
T Consensus 298 ~~~P~vVhcsaG~gRtgt~v~~~~~~~~~~~~~~~~~~~~~~~~iR~q 345 (415)
T KOG0789|consen 298 KQEPIEVHCSAGAGRAGTLVLIEHALIELQGPEGEPPIDEILREIRYQ 345 (415)
T ss_pred CCCCeEEECCCCCCccchHHHHHHHHHHHhcCCCCccHHHHHHHHHHH
Confidence 4589999999999999999986643 2 22 3466666545544
No 43
>KOG4228 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=97.03 E-value=0.00084 Score=68.01 Aligned_cols=37 Identities=22% Similarity=0.437 Sum_probs=25.9
Q ss_pred HHHHHHHHHHhc---CCCcEEEEcCCCCChHHHHHHHHHH
Q 028110 128 MIREALKVLLDV---RNHPVLIHCKRGKHRTGCLVGCLRK 164 (213)
Q Consensus 128 ~i~~al~~i~d~---~~~PVLVHC~~Gk~RTG~vva~yl~ 164 (213)
.+.++++.+... ..+|++|||++|.||||+++++=-|
T Consensus 714 ~lL~f~rrvk~~~p~~aGPiVVHCSAGvGRTG~fi~iDam 753 (1087)
T KOG4228|consen 714 GLLKFRRRVKTFNPPDAGPIVVHCSAGVGRTGCFIVIDAM 753 (1087)
T ss_pred HHHHHHHHhccCCCcCCCCEEEECCCCCCCcceEEEeHHH
Confidence 344455554432 4599999999999999998755443
No 44
>KOG0793 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=96.75 E-value=0.0026 Score=62.11 Aligned_cols=54 Identities=17% Similarity=0.271 Sum_probs=36.8
Q ss_pred cCCCcEEEEcCCCCChHHHHHHHHHH----HCCCCHHHHHHHHHhHhc--ccCCchHHHH
Q 028110 139 VRNHPVLIHCKRGKHRTGCLVGCLRK----LQKWCLSSVFDEYQRFAA--AKARVSDQRF 192 (213)
Q Consensus 139 ~~~~PVLVHC~~Gk~RTG~vva~yl~----~~gws~e~al~ey~~~~~--~~~~~~~~~f 192 (213)
-+..||+|||..|.||||+.+.+-+. ..|..--+|.+...+.+. +......++|
T Consensus 925 GRScpIiVH~sdGaGRTG~YiliDmvl~Rm~kGakeIDIaATlEHlRDQR~GmVaTkdQF 984 (1004)
T KOG0793|consen 925 GRSCPIIVHCSDGAGRTGTYILIDMVLNRMAKGAKEIDIAATLEHLRDQRPGMVATKDQF 984 (1004)
T ss_pred CCCCceEEEccCCCCccceeeeHHHHHHHHhccchhhhHHHHHHHHhhcCCcceeehhhh
Confidence 35689999999999999988766554 468766666666666553 2223344555
No 45
>cd01448 TST_Repeat_1 Thiosulfate sulfurtransferase (TST), N-terminal, inactive domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the 1st repeat, which does not contain the catalytically active Cys residue. The role of the 1st repeat is uncertain, but it is believed to be involved in protein interaction.
Probab=94.70 E-value=0.38 Score=36.15 Aligned_cols=43 Identities=12% Similarity=-0.071 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHhcCCCcEEEEcCCCCChHHHHHHHHHHHCCCC
Q 028110 126 EDMIREALKVLLDVRNHPVLIHCKRGKHRTGCLVGCLRKLQKWC 169 (213)
Q Consensus 126 ~~~i~~al~~i~d~~~~PVLVHC~~Gk~RTG~vva~yl~~~gws 169 (213)
.+.+.+.+....-..+.||+|+|..| ++.+..++.++...|++
T Consensus 64 ~~~~~~~~~~~~~~~~~~vv~~c~~g-~~~a~~~~~~l~~~G~~ 106 (122)
T cd01448 64 PEEFAELLGSLGISNDDTVVVYDDGG-GFFAARAWWTLRYFGHE 106 (122)
T ss_pred HHHHHHHHHHcCCCCCCEEEEECCCC-CccHHHHHHHHHHcCCC
Confidence 45566565543223678999999997 45555556666667765
No 46
>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.
Probab=94.21 E-value=0.28 Score=35.76 Aligned_cols=29 Identities=21% Similarity=0.300 Sum_probs=20.6
Q ss_pred cCCCcEEEEcCCCCChHHHHHHHHHHHCCCC
Q 028110 139 VRNHPVLIHCKRGKHRTGCLVGCLRKLQKWC 169 (213)
Q Consensus 139 ~~~~PVLVHC~~Gk~RTG~vva~yl~~~gws 169 (213)
.++.+|+|+|..|. |+...+ .++..+|.+
T Consensus 59 ~~~~~ivvyC~~G~-rs~~a~-~~L~~~G~~ 87 (101)
T cd01518 59 LKGKKVLMYCTGGI-RCEKAS-AYLKERGFK 87 (101)
T ss_pred cCCCEEEEECCCch-hHHHHH-HHHHHhCCc
Confidence 36789999999984 886554 455556664
No 47
>PLN02160 thiosulfate sulfurtransferase
Probab=94.14 E-value=0.27 Score=38.57 Aligned_cols=87 Identities=11% Similarity=0.119 Sum_probs=43.0
Q ss_pred hcHHHHHhcCCcEEEEcCCCCCCCchHhHhhhCCceEEEeeecCCCCCCCCC-CHHHHHHHHHHHHhcCCCcEEEEcCCC
Q 028110 73 ANFSFLQTLRLRSIIYLCPEPYPEANTEFLKSNGIKLFQFAIEGHKEPFVNI-PEDMIREALKVLLDVRNHPVLIHCKRG 151 (213)
Q Consensus 73 ~~~~~L~~lGIktVI~Lr~e~~~~~~~~~~~~~Gi~~~~ipi~d~~~p~~~i-~~~~i~~al~~i~d~~~~PVLVHC~~G 151 (213)
.++..+.+.+ ..|||+|+..... . ..-.|-..+++|..... +...+ +.+.+.+... ++ ..+.||++||..|
T Consensus 20 ~e~~~~~~~~-~~lIDVR~~~E~~--~--ghIpgA~~iniP~~~~~-~~~~l~~~~~~~~~~~-~~-~~~~~IivyC~sG 91 (136)
T PLN02160 20 SQAKTLLQSG-HQYLDVRTQDEFR--R--GHCEAAKIVNIPYMLNT-PQGRVKNQEFLEQVSS-LL-NPADDILVGCQSG 91 (136)
T ss_pred HHHHHHHhCC-CEEEECCCHHHHh--c--CCCCCcceecccchhcC-cccccCCHHHHHHHHh-cc-CCCCcEEEECCCc
Confidence 3444444446 3799999863110 0 01123234667763221 10111 1222222222 22 2568999999999
Q ss_pred CChHHHHHHHHHHHCCCC
Q 028110 152 KHRTGCLVGCLRKLQKWC 169 (213)
Q Consensus 152 k~RTG~vva~yl~~~gws 169 (213)
. |+...+..+ ...|..
T Consensus 92 ~-RS~~Aa~~L-~~~G~~ 107 (136)
T PLN02160 92 A-RSLKATTEL-VAAGYK 107 (136)
T ss_pred H-HHHHHHHHH-HHcCCC
Confidence 4 777654444 445653
No 48
>PF04343 DUF488: Protein of unknown function, DUF488; InterPro: IPR007438 This family includes several proteins of uncharacterised function.
Probab=93.83 E-value=0.28 Score=37.57 Aligned_cols=42 Identities=21% Similarity=0.339 Sum_probs=32.6
Q ss_pred HHHHHhcCCcEEEEcCCCCC------C-CchHhHhhhCCceEEEeeecC
Q 028110 75 FSFLQTLRLRSIIYLCPEPY------P-EANTEFLKSNGIKLFQFAIEG 116 (213)
Q Consensus 75 ~~~L~~lGIktVI~Lr~e~~------~-~~~~~~~~~~Gi~~~~ipi~d 116 (213)
+..|+..||+.|||+|..+. . .....++...||.|+|+|--+
T Consensus 6 ~~~l~~~~i~~lVDVR~~P~S~~~~~~k~~l~~~l~~~gi~Y~~~~~Lg 54 (122)
T PF04343_consen 6 YDLLKKNGIRVLVDVRLWPRSRKPGFNKEDLASFLEEAGIEYVWLPELG 54 (122)
T ss_pred HHHHHHCCCeEEEEECCCCCCCCCCCCHHHHHHHHHHCCceEeechhhc
Confidence 35788999999999987654 1 245666788999999998744
No 49
>KOG4471 consensus Phosphatidylinositol 3-phosphate 3-phosphatase myotubularin MTM1 [Lipid transport and metabolism; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.74 E-value=0.098 Score=50.54 Aligned_cols=73 Identities=25% Similarity=0.403 Sum_probs=41.7
Q ss_pred cCCCcEEEEcCCCCChHHHHHHHHHHH-----CCCCHHHHH--HHHHhHhcc---------cCCc-hH--HHHHHHhcc-
Q 028110 139 VRNHPVLIHCKRGKHRTGCLVGCLRKL-----QKWCLSSVF--DEYQRFAAA---------KARV-SD--QRFMELFDI- 198 (213)
Q Consensus 139 ~~~~PVLVHC~~Gk~RTG~vva~yl~~-----~gws~e~al--~ey~~~~~~---------~~~~-~~--~~fie~f~~- 198 (213)
....||||||+.|-|||.-++++-+.+ .-...-+++ +|...|... +... .+ +=|++-+|-
T Consensus 372 ~~~~sVlVHCSDGWDRT~QlvsLA~LlLDpYYRTieGFqvLVEkeWLsFGHkFadRvGhg~ns~~~ndrsPVFLQwlDcV 451 (717)
T KOG4471|consen 372 SESRSVLVHCSDGWDRTAQLVSLAMLLLDPYYRTIEGFQVLVEKEWLSFGHKFADRVGHGNNSHGDNDRSPVFLQWLDCV 451 (717)
T ss_pred cCCceEEEEcCCCccchHHHHHHHHHHhchhhhhhhhhHHHHHHHHHhcCChhhhhcCCCCCcccccccCchhHHHHHHH
Confidence 357899999999999999777655442 222333333 345544422 1111 11 234444444
Q ss_pred -cccccCCCCCCcc
Q 028110 199 -SSLKHLPMSFSCL 211 (213)
Q Consensus 199 -~~~~~~~~~~~~~ 211 (213)
..++++|..|-++
T Consensus 452 ~Ql~rqfP~aFEFn 465 (717)
T KOG4471|consen 452 WQLMRQFPCAFEFN 465 (717)
T ss_pred HHHHHhCCcccccC
Confidence 6777788777654
No 50
>KOG4228 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=93.72 E-value=0.037 Score=56.51 Aligned_cols=41 Identities=20% Similarity=0.344 Sum_probs=30.2
Q ss_pred CCCcEEEEcCCCCChHHHHHHHHHHHCC------CCHHHHHHHHHhH
Q 028110 140 RNHPVLIHCKRGKHRTGCLVGCLRKLQK------WCLSSVFDEYQRF 180 (213)
Q Consensus 140 ~~~PVLVHC~~Gk~RTG~vva~yl~~~g------ws~e~al~ey~~~ 180 (213)
..+|+.|||..|.+|||+++|+-..+.. ++.=++++-++..
T Consensus 1017 ~~~P~~Vhc~nG~~rsg~f~ai~~l~e~~~~e~~vDVfq~vk~Lr~~ 1063 (1087)
T KOG4228|consen 1017 ADGPIIVHCLNGVGRTGTFCAISILLERMRKEGVVDVFQTVKTLRFQ 1063 (1087)
T ss_pred CCCCEEEEEcCCCcceeehHHHHHHHHHHhhcCceeeehhhhhhhhc
Confidence 3799999999999999999988776533 3444555544443
No 51
>PF06602 Myotub-related: Myotubularin-like phosphatase domain; InterPro: IPR010569 This family represents a region within eukaryotic myotubularin-related proteins that is sometimes found with IPR004182 from INTERPRO. Myotubularin is a dual-specific lipid phosphatase that dephosphorylates phosphatidylinositol 3-phosphate and phosphatidylinositol (3,5)-bi-phosphate []. Mutations in gene encoding myotubularin-related proteins have been associated with disease [].; GO: 0016791 phosphatase activity, 0016311 dephosphorylation; PDB: 1M7R_B 1LW3_A 1ZVR_A 1ZSQ_A 2YF0_A.
Probab=93.56 E-value=0.14 Score=46.79 Aligned_cols=26 Identities=35% Similarity=0.534 Sum_probs=21.7
Q ss_pred CCCcEEEEcCCCCChHHHHHHHHHHH
Q 028110 140 RNHPVLIHCKRGKHRTGCLVGCLRKL 165 (213)
Q Consensus 140 ~~~PVLVHC~~Gk~RTG~vva~yl~~ 165 (213)
.+.+|||||..|.|||..++++..++
T Consensus 230 ~~~~Vlvh~~dGwDrt~q~~sL~ql~ 255 (353)
T PF06602_consen 230 EGSSVLVHCSDGWDRTSQLSSLAQLL 255 (353)
T ss_dssp T--EEEEECTTSSSHHHHHHHHHHHH
T ss_pred cCceEEEEcCCCCcccHHHHHHHHHH
Confidence 67899999999999999999887764
No 52
>COG0607 PspE Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=92.88 E-value=0.68 Score=33.62 Aligned_cols=74 Identities=12% Similarity=0.129 Sum_probs=42.7
Q ss_pred HHHHHhcCCcEEEEcCCCCCCCchHhHhhhCCce-EEEeeecCCCCCCCCCCHHHHHHHHHHHHhcCCCcEEEEcCCCCC
Q 028110 75 FSFLQTLRLRSIIYLCPEPYPEANTEFLKSNGIK-LFQFAIEGHKEPFVNIPEDMIREALKVLLDVRNHPVLIHCKRGKH 153 (213)
Q Consensus 75 ~~~L~~lGIktVI~Lr~e~~~~~~~~~~~~~Gi~-~~~ipi~d~~~p~~~i~~~~i~~al~~i~d~~~~PVLVHC~~Gk~ 153 (213)
...+...+--.|||+|..... ...+-.. ..++|+.+..... ......++.+++|+|.+|.
T Consensus 12 ~~~~~~~~~~~liDvR~~~e~------~~~~i~~~~~~ip~~~~~~~~------------~~~~~~~~~~ivv~C~~G~- 72 (110)
T COG0607 12 AALLLAGEDAVLLDVREPEEY------ERGHIPGAAINIPLSELKAAE------------NLLELPDDDPIVVYCASGV- 72 (110)
T ss_pred HHHhhccCCCEEEeccChhHh------hhcCCCcceeeeecccchhhh------------cccccCCCCeEEEEeCCCC-
Confidence 345556678899999986211 1111122 6777776642210 0000347899999999996
Q ss_pred hHHHHHHHHHHHCCC
Q 028110 154 RTGCLVGCLRKLQKW 168 (213)
Q Consensus 154 RTG~vva~yl~~~gw 168 (213)
|++. ++.+|+.+|.
T Consensus 73 rS~~-aa~~L~~~G~ 86 (110)
T COG0607 73 RSAA-AAAALKLAGF 86 (110)
T ss_pred ChHH-HHHHHHHcCC
Confidence 7754 4555555553
No 53
>PF04179 Init_tRNA_PT: Initiator tRNA phosphoribosyl transferase ; InterPro: IPR007306 This enzyme (2.4.2 from EC) modifies exclusively the initiator tRNA in position 64 using 5'-phosphoribosyl-1'-pyrophosphate as the modification donor. As the initiator tRNA participates both in the initiation and elongation of translation, the 2'-O-ribosyl phosphate modification discriminates the initiator tRNAs from the elongator tRNAs. ; GO: 0016763 transferase activity, transferring pentosyl groups
Probab=92.87 E-value=0.46 Score=44.83 Aligned_cols=101 Identities=14% Similarity=0.203 Sum_probs=60.1
Q ss_pred ccccceEEcCCCChhcH--HHHH--hcCCcEEEEcCCCCCCCchHhHhhhCCceEEEeeecCCCCCCCCCCHHHHHHHHH
Q 028110 59 MVDNGIFRSGFPDSANF--SFLQ--TLRLRSIIYLCPEPYPEANTEFLKSNGIKLFQFAIEGHKEPFVNIPEDMIREALK 134 (213)
Q Consensus 59 ~V~~~Lyrs~~p~~~~~--~~L~--~lGIktVI~Lr~e~~~~~~~~~~~~~Gi~~~~ipi~d~~~p~~~i~~~~i~~al~ 134 (213)
..+.+||.|.-.....+ .... ...+..||++.+..... . .....-.++|+|+...+..... -...+.++..
T Consensus 291 ~~~~~i~ig~~~~~l~~~~~~~~~~~~~~~~vI~~s~~~~~~--~--~~~~~~~~L~l~i~~~K~gs~~-LR~~LP~i~~ 365 (451)
T PF04179_consen 291 PGTTGIYIGKISSNLAISKAQLPDLESEFDCVINCSESPTPK--E--SWPKSPKYLHLPIPSSKKGSRD-LRKALPKICS 365 (451)
T ss_pred cCCCCeEEeccCCccccchhhccccCCCcCEEEEcCCCcccc--c--ccCCCceEEeCcCCCCcccHHH-HHHHHHHHHH
Confidence 35667888876552222 1222 34688999998864321 1 1135678999999886543110 1123333444
Q ss_pred HHHh----cCCCcEEEEcCCCCChHHHHHHHHHH
Q 028110 135 VLLD----VRNHPVLIHCKRGKHRTGCLVGCLRK 164 (213)
Q Consensus 135 ~i~d----~~~~PVLVHC~~Gk~RTG~vva~yl~ 164 (213)
++.. ..+.+|||+|..|+|.+-.|+.+++.
T Consensus 366 fv~~~L~~~~~~~iLV~C~sGkDlSVgVaLaILc 399 (451)
T PF04179_consen 366 FVRSHLSSDPGKPILVCCDSGKDLSVGVALAILC 399 (451)
T ss_pred HHHHHhcccCCCcEEEEcCCcchHHHHHHHHHHH
Confidence 4433 13789999999999987665544443
No 54
>cd01533 4RHOD_Repeat_2 Member of the Rhodanese Homology Domain superfamily, repeat 2. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 2nd repeat which does contain the putative catalytic Cys residue.
Probab=92.33 E-value=0.4 Score=35.48 Aligned_cols=43 Identities=12% Similarity=0.048 Sum_probs=27.3
Q ss_pred CHHHHHHHHHHHHhcCCCcEEEEcCCCCChHHHHHHHHHHHCCCC
Q 028110 125 PEDMIREALKVLLDVRNHPVLIHCKRGKHRTGCLVGCLRKLQKWC 169 (213)
Q Consensus 125 ~~~~i~~al~~i~d~~~~PVLVHC~~Gk~RTG~vva~yl~~~gws 169 (213)
+...+...+..+...++.||+|||..|. |+.. ++..|...|.+
T Consensus 50 p~~~l~~~~~~l~~~~~~~ivv~C~~G~-rs~~-a~~~L~~~G~~ 92 (109)
T cd01533 50 PGAELVLRVGELAPDPRTPIVVNCAGRT-RSII-GAQSLINAGLP 92 (109)
T ss_pred CHHHHHHHHHhcCCCCCCeEEEECCCCc-hHHH-HHHHHHHCCCC
Confidence 3445554555554335689999999996 7744 45555666763
No 55
>cd01519 RHOD_HSP67B2 Member of the Rhodanese Homology Domain superfamily. This CD includes the heat shock protein 67B2 of Drosophila melanogaster and other similar proteins, many of which are uncharacterized.
Probab=91.95 E-value=0.79 Score=33.32 Aligned_cols=78 Identities=13% Similarity=0.204 Sum_probs=40.5
Q ss_pred CcEEEEcCCCCCCCchHhHhhhCCceEEEeeecCCCCCCCCCCHHHHHHHHHHHHhcCCCcEEEEcCCCCChHHHHHHHH
Q 028110 83 LRSIIYLCPEPYPEANTEFLKSNGIKLFQFAIEGHKEPFVNIPEDMIREALKVLLDVRNHPVLIHCKRGKHRTGCLVGCL 162 (213)
Q Consensus 83 IktVI~Lr~e~~~~~~~~~~~~~Gi~~~~ipi~d~~~p~~~i~~~~i~~al~~i~d~~~~PVLVHC~~Gk~RTG~vva~y 162 (213)
=..|||+|+..... .. .-.|- +++|....... ..++.+.+.+.+......++.+|+|+|..|. |+. .++.+
T Consensus 15 ~~~iiDvR~~~e~~--~g--hIpgA--~~ip~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ivv~c~~g~-~s~-~~~~~ 85 (106)
T cd01519 15 NKVLIDVREPEELK--TG--KIPGA--INIPLSSLPDA-LALSEEEFEKKYGFPKPSKDKELIFYCKAGV-RSK-AAAEL 85 (106)
T ss_pred CEEEEECCCHHHHh--cC--cCCCc--EEechHHhhhh-hCCCHHHHHHHhcccCCCCCCeEEEECCCcH-HHH-HHHHH
Confidence 35799999852110 00 01222 44555432111 1123445555554433235789999999985 654 44555
Q ss_pred HHHCCCC
Q 028110 163 RKLQKWC 169 (213)
Q Consensus 163 l~~~gws 169 (213)
+...|..
T Consensus 86 l~~~G~~ 92 (106)
T cd01519 86 ARSLGYE 92 (106)
T ss_pred HHHcCCc
Confidence 5566764
No 56
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=91.90 E-value=1.1 Score=32.40 Aligned_cols=28 Identities=11% Similarity=0.190 Sum_probs=19.6
Q ss_pred CCCcEEEEcCCCCChHHHHHHHHHHHCCCC
Q 028110 140 RNHPVLIHCKRGKHRTGCLVGCLRKLQKWC 169 (213)
Q Consensus 140 ~~~PVLVHC~~Gk~RTG~vva~yl~~~gws 169 (213)
.+.||+|||..|. |+..++ ..|..+|.+
T Consensus 60 ~~~~ivv~C~~G~-rs~~aa-~~L~~~G~~ 87 (100)
T cd01523 60 DDQEVTVICAKEG-SSQFVA-ELLAERGYD 87 (100)
T ss_pred CCCeEEEEcCCCC-cHHHHH-HHHHHcCce
Confidence 5789999999995 775544 444456664
No 57
>KOG1089 consensus Myotubularin-related phosphatidylinositol 3-phosphate 3-phosphatase MTM6 [General function prediction only]
Probab=91.24 E-value=0.28 Score=47.36 Aligned_cols=28 Identities=29% Similarity=0.404 Sum_probs=24.0
Q ss_pred cCCCcEEEEcCCCCChHHHHHHHHHHHC
Q 028110 139 VRNHPVLIHCKRGKHRTGCLVGCLRKLQ 166 (213)
Q Consensus 139 ~~~~PVLVHC~~Gk~RTG~vva~yl~~~ 166 (213)
..+.+|||||..|.|||..|+.+..+++
T Consensus 342 ~~~~sVlvhcsdGwDrT~qV~SLaQllL 369 (573)
T KOG1089|consen 342 SEGASVLVHCSDGWDRTCQVSSLAQLLL 369 (573)
T ss_pred hCCCeEEEEccCCcchhHHHHHHHHHHh
Confidence 3568999999999999999998887653
No 58
>PRK01415 hypothetical protein; Validated
Probab=89.78 E-value=1.2 Score=38.84 Aligned_cols=38 Identities=18% Similarity=0.234 Sum_probs=25.2
Q ss_pred CCCcEEEEcCCCCChHHHHHHHHHHHCCCC----HHHHHHHHHh
Q 028110 140 RNHPVLIHCKRGKHRTGCLVGCLRKLQKWC----LSSVFDEYQR 179 (213)
Q Consensus 140 ~~~PVLVHC~~Gk~RTG~vva~yl~~~gws----~e~al~ey~~ 179 (213)
++.||+++|++|. |+-. ++.+|+.+|.. ++.=+..|..
T Consensus 170 k~k~Iv~yCtgGi-Rs~k-Aa~~L~~~Gf~~Vy~L~GGi~~w~~ 211 (247)
T PRK01415 170 KGKKIAMVCTGGI-RCEK-STSLLKSIGYDEVYHLKGGILQYLE 211 (247)
T ss_pred CCCeEEEECCCCh-HHHH-HHHHHHHcCCCcEEEechHHHHHHH
Confidence 6789999999996 8754 45556656664 4444445554
No 59
>KOG1530 consensus Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=89.60 E-value=2 Score=34.05 Aligned_cols=80 Identities=8% Similarity=0.001 Sum_probs=45.4
Q ss_pred cHHHHHhcCCcEEEEcCCCCCCCchHhHhhhCC-ceEEEeeecCCCCCCCCCCHHHHHHHHHHHHhcCCCcEEEEcCCCC
Q 028110 74 NFSFLQTLRLRSIIYLCPEPYPEANTEFLKSNG-IKLFQFAIEGHKEPFVNIPEDMIREALKVLLDVRNHPVLIHCKRGK 152 (213)
Q Consensus 74 ~~~~L~~lGIktVI~Lr~e~~~~~~~~~~~~~G-i~~~~ipi~d~~~p~~~i~~~~i~~al~~i~d~~~~PVLVHC~~Gk 152 (213)
+...|-+.|=...||+|..+. ++.-+ -.-+++|+....... .+....+.+.+..........|+|||..|+
T Consensus 29 qvk~L~~~~~~~llDVRepeE-------fk~gh~~~siNiPy~~~~~~~-~l~~~eF~kqvg~~kp~~d~eiIf~C~SG~ 100 (136)
T KOG1530|consen 29 QVKNLLQHPDVVLLDVREPEE-------FKQGHIPASINIPYMSRPGAG-ALKNPEFLKQVGSSKPPHDKEIIFGCASGV 100 (136)
T ss_pred HHHHHhcCCCEEEEeecCHHH-------hhccCCcceEecccccccccc-ccCCHHHHHHhcccCCCCCCcEEEEeccCc
Confidence 334555667688999997421 11112 255788875542221 223344444444444444568999999997
Q ss_pred ChHHHHHHHH
Q 028110 153 HRTGCLVGCL 162 (213)
Q Consensus 153 ~RTG~vva~y 162 (213)
|+....-.+
T Consensus 101 -Rs~~A~~~l 109 (136)
T KOG1530|consen 101 -RSLKATKIL 109 (136)
T ss_pred -chhHHHHHH
Confidence 875544433
No 60
>PRK00142 putative rhodanese-related sulfurtransferase; Provisional
Probab=88.85 E-value=1.9 Score=38.76 Aligned_cols=28 Identities=18% Similarity=0.312 Sum_probs=20.8
Q ss_pred CCCcEEEEcCCCCChHHHHHHHHHHHCCCC
Q 028110 140 RNHPVLIHCKRGKHRTGCLVGCLRKLQKWC 169 (213)
Q Consensus 140 ~~~PVLVHC~~Gk~RTG~vva~yl~~~gws 169 (213)
++.||+|||.+|. |+... +.+|+.+|.+
T Consensus 170 kdk~IvvyC~~G~-Rs~~a-a~~L~~~Gf~ 197 (314)
T PRK00142 170 KDKKVVMYCTGGI-RCEKA-SAWMKHEGFK 197 (314)
T ss_pred CcCeEEEECCCCc-HHHHH-HHHHHHcCCC
Confidence 5789999999996 88654 5566656764
No 61
>PF00581 Rhodanese: Rhodanese-like domain This Prosite entry represents a subset of this family.; InterPro: IPR001763 Rhodanese, a sulphurtransferase involved in cyanide detoxification (see IPR001307 from INTERPRO) shares evolutionary relationship with a large family of proteins [], including Cdc25 phosphatase catalytic domain. non-catalytic domains of eukaryotic dual-specificity MAPK-phosphatases. non-catalytic domains of yeast PTP-type MAPK-phosphatases. non-catalytic domains of yeast Ubp4, Ubp5, Ubp7. non-catalytic domains of mammalian Ubp-Y. Drosophila heat shock protein HSP-67BB. several bacterial cold-shock and phage shock proteins. plant senescence associated proteins. catalytic and non-catalytic domains of rhodanese (see IPR001307 from INTERPRO). Rhodanese has an internal duplication. This domain is found as a single copy in other proteins, including phosphatases and ubiquitin C-terminal hydrolases [].; PDB: 2J6P_D 2FSX_A 1UAR_A 1OKG_A 1GMX_A 1GN0_A 3NTD_B 3NTA_B 3NT6_A 1C25_A ....
Probab=88.81 E-value=4.9 Score=28.83 Aligned_cols=81 Identities=14% Similarity=0.153 Sum_probs=42.6
Q ss_pred cHHHHHhcCCcEEEEcCCCCCCCchHhHhhhCCceEEEeeecCCCCCCCCCCHHHHHHHHHHHHh--cCCCcEEEEcCCC
Q 028110 74 NFSFLQTLRLRSIIYLCPEPYPEANTEFLKSNGIKLFQFAIEGHKEPFVNIPEDMIREALKVLLD--VRNHPVLIHCKRG 151 (213)
Q Consensus 74 ~~~~L~~lGIktVI~Lr~e~~~~~~~~~~~~~Gi~~~~ipi~d~~~p~~~i~~~~i~~al~~i~d--~~~~PVLVHC~~G 151 (213)
++..+...+=-.|||.|+... +...+=-.-+++|.............+.+...+..... ..+.+|+++|..|
T Consensus 4 el~~~l~~~~~~liD~R~~~~------~~~~hI~ga~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~yc~~~ 77 (113)
T PF00581_consen 4 ELKEMLENESVLLIDVRSPEE------YERGHIPGAVNIPFPSLDPDEPSLSEDKLDEFLKELGKKIDKDKDIVFYCSSG 77 (113)
T ss_dssp HHHHHHTTTTEEEEEESSHHH------HHHSBETTEEEEEGGGGSSSSSBCHHHHHHHHHHHHTHGSTTTSEEEEEESSS
T ss_pred HHHhhhhCCCeEEEEeCCHHH------HHcCCCCCCccccccccccccccccccccccccccccccccccccceeeeecc
Confidence 343333556778999997521 11111112377777443111111223444444444333 3567899999777
Q ss_pred CChHHHHHHH
Q 028110 152 KHRTGCLVGC 161 (213)
Q Consensus 152 k~RTG~vva~ 161 (213)
. |++..+++
T Consensus 78 ~-~~~~~~~~ 86 (113)
T PF00581_consen 78 W-RSGSAAAA 86 (113)
T ss_dssp C-HHHHHHHH
T ss_pred c-ccchhHHH
Confidence 5 77766665
No 62
>cd01528 RHOD_2 Member of the Rhodanese Homology Domain superfamily, subgroup 2. Subgroup 2 includes uncharacterized putative rhodanese-related domains.
Probab=88.26 E-value=2.3 Score=30.77 Aligned_cols=41 Identities=20% Similarity=0.187 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHh-cCCCcEEEEcCCCCChHHHHHHHHHHHCCCC
Q 028110 127 DMIREALKVLLD-VRNHPVLIHCKRGKHRTGCLVGCLRKLQKWC 169 (213)
Q Consensus 127 ~~i~~al~~i~d-~~~~PVLVHC~~Gk~RTG~vva~yl~~~gws 169 (213)
..+...+..+.. ..+.||+++|..|. |+... +.++...|.+
T Consensus 43 ~~~~~~~~~~~~~~~~~~vv~~c~~g~-rs~~~-~~~l~~~G~~ 84 (101)
T cd01528 43 SEIPERSKELDSDNPDKDIVVLCHHGG-RSMQV-AQWLLRQGFE 84 (101)
T ss_pred HHHHHHHHHhcccCCCCeEEEEeCCCc-hHHHH-HHHHHHcCCc
Confidence 344334444432 24789999999984 76444 4444446664
No 63
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=88.10 E-value=1.5 Score=37.85 Aligned_cols=91 Identities=18% Similarity=0.300 Sum_probs=63.0
Q ss_pred cHHHHHhcCCcEEEEcCCCCC--CCchHhHhhhCCceEEEe---eecCCCCCCCCCCHHHHHHHHHHHHhcCCCcEEEEc
Q 028110 74 NFSFLQTLRLRSIIYLCPEPY--PEANTEFLKSNGIKLFQF---AIEGHKEPFVNIPEDMIREALKVLLDVRNHPVLIHC 148 (213)
Q Consensus 74 ~~~~L~~lGIktVI~Lr~e~~--~~~~~~~~~~~Gi~~~~i---pi~d~~~p~~~i~~~~i~~al~~i~d~~~~PVLVHC 148 (213)
-++.|+.+|+|.|--++|... .+...+++++.||+...+ .+.+.. ....++++.+.+++..+....--.|++=|
T Consensus 111 ~~~AL~alg~~RIalvTPY~~~v~~~~~~~l~~~G~eV~~~~~~~~~~~~-~ia~i~p~~i~~~~~~~~~~~aDAifisC 189 (239)
T TIGR02990 111 AVDGLAALGVRRISLLTPYTPETSRPMAQYFAVRGFEIVNFTCLGLTDDR-EMARISPDCIVEAALAAFDPDADALFLSC 189 (239)
T ss_pred HHHHHHHcCCCEEEEECCCcHHHHHHHHHHHHhCCcEEeeeeccCCCCCc-eeeecCHHHHHHHHHHhcCCCCCEEEEeC
Confidence 457899999999999999632 346788899999998876 343321 23356788888887776544456799999
Q ss_pred CCCCChHHHHHHHHHHHCC
Q 028110 149 KRGKHRTGCLVGCLRKLQK 167 (213)
Q Consensus 149 ~~Gk~RTG~vva~yl~~~g 167 (213)
+.= ||--++.-+-...|
T Consensus 190 TnL--rt~~vi~~lE~~lG 206 (239)
T TIGR02990 190 TAL--RAATCAQRIEQAIG 206 (239)
T ss_pred CCc--hhHHHHHHHHHHHC
Confidence 772 66555555544444
No 64
>smart00450 RHOD Rhodanese Homology Domain. An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions.
Probab=86.05 E-value=5.3 Score=27.61 Aligned_cols=29 Identities=21% Similarity=0.480 Sum_probs=18.6
Q ss_pred cCCCcEEEEcCCCCChHHHHHHHHHHHCCCC
Q 028110 139 VRNHPVLIHCKRGKHRTGCLVGCLRKLQKWC 169 (213)
Q Consensus 139 ~~~~PVLVHC~~Gk~RTG~vva~yl~~~gws 169 (213)
..+.+|+|+|..|. |+ ..++.++...|..
T Consensus 54 ~~~~~iv~~c~~g~-~a-~~~~~~l~~~G~~ 82 (100)
T smart00450 54 DKDKPVVVYCRSGN-RS-AKAAWLLRELGFK 82 (100)
T ss_pred CCCCeEEEEeCCCc-HH-HHHHHHHHHcCCC
Confidence 46789999996654 55 4444444455654
No 65
>cd01527 RHOD_YgaP Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YgaP, and similar uncharacterized putative rhodanese-related sulfurtransferases.
Probab=83.60 E-value=6.7 Score=28.04 Aligned_cols=22 Identities=27% Similarity=0.519 Sum_probs=15.7
Q ss_pred CCCcEEEEcCCCCChHHHHHHHH
Q 028110 140 RNHPVLIHCKRGKHRTGCLVGCL 162 (213)
Q Consensus 140 ~~~PVLVHC~~Gk~RTG~vva~y 162 (213)
.+.+|+++|..|. |+..++..+
T Consensus 53 ~~~~iv~~c~~g~-~s~~~~~~L 74 (99)
T cd01527 53 GANAIIFHCRSGM-RTQQNAERL 74 (99)
T ss_pred CCCcEEEEeCCCc-hHHHHHHHH
Confidence 5689999999985 665544443
No 66
>PRK09875 putative hydrolase; Provisional
Probab=82.61 E-value=8.6 Score=34.22 Aligned_cols=37 Identities=16% Similarity=0.255 Sum_probs=25.2
Q ss_pred cHHHHHhcCCcEEEEcCCCCCC---CchHhHhhhCCceEE
Q 028110 74 NFSFLQTLRLRSIIYLCPEPYP---EANTEFLKSNGIKLF 110 (213)
Q Consensus 74 ~~~~L~~lGIktVI~Lr~e~~~---~~~~~~~~~~Gi~~~ 110 (213)
++..++++|.+|||+.++...- ....+..++.|+..+
T Consensus 39 el~~~~~~Gg~tiVd~T~~g~GRd~~~l~~is~~tgv~Iv 78 (292)
T PRK09875 39 EMNDLMTRGVRNVIEMTNRYMGRNAQFMLDVMRETGINVV 78 (292)
T ss_pred HHHHHHHhCCCeEEecCCCccCcCHHHHHHHHHHhCCcEE
Confidence 6678889999999999976332 234455555665544
No 67
>cd01522 RHOD_1 Member of the Rhodanese Homology Domain superfamily, subgroup 1. This CD includes the putative rhodanese-related sulfurtransferases of several uncharacterized proteins.
Probab=82.53 E-value=11 Score=28.35 Aligned_cols=27 Identities=22% Similarity=0.528 Sum_probs=18.6
Q ss_pred CCCcEEEEcCCCCChHHHHHHHHHHHCCC
Q 028110 140 RNHPVLIHCKRGKHRTGCLVGCLRKLQKW 168 (213)
Q Consensus 140 ~~~PVLVHC~~Gk~RTG~vva~yl~~~gw 168 (213)
.+.+|+|+|..|. |+...+..+ ...|.
T Consensus 63 ~~~~ivv~C~~G~-rs~~aa~~L-~~~G~ 89 (117)
T cd01522 63 KDRPVLLLCRSGN-RSIAAAEAA-AQAGF 89 (117)
T ss_pred CCCeEEEEcCCCc-cHHHHHHHH-HHCCC
Confidence 6789999999985 776554443 44454
No 68
>PRK00162 glpE thiosulfate sulfurtransferase; Validated
Probab=82.47 E-value=5.9 Score=29.02 Aligned_cols=40 Identities=18% Similarity=0.266 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHhcCCCcEEEEcCCCCChHHHHHHHHHHHCCCC
Q 028110 126 EDMIREALKVLLDVRNHPVLIHCKRGKHRTGCLVGCLRKLQKWC 169 (213)
Q Consensus 126 ~~~i~~al~~i~d~~~~PVLVHC~~Gk~RTG~vva~yl~~~gws 169 (213)
...+...+..+ + .+.+++|+|..|. |+ ..++..|...|++
T Consensus 45 ~~~l~~~~~~~-~-~~~~ivv~c~~g~-~s-~~a~~~L~~~G~~ 84 (108)
T PRK00162 45 NDSLGAFMRQA-D-FDTPVMVMCYHGN-SS-QGAAQYLLQQGFD 84 (108)
T ss_pred HHHHHHHHHhc-C-CCCCEEEEeCCCC-CH-HHHHHHHHHCCch
Confidence 34455454443 2 5789999999985 54 4445555556764
No 69
>cd01443 Cdc25_Acr2p Cdc25 enzymes are members of the Rhodanese Homology Domain (RHOD) superfamily. Also included in this CD are eukaryotic arsenate resistance proteins such as Saccharomyces cerevisiae Acr2p and similar proteins. Cdc25 phosphatases activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. The Cdc25 and Acr2p RHOD domains have the signature motif (H/YCxxxxxR).
Probab=82.41 E-value=8.6 Score=28.48 Aligned_cols=20 Identities=10% Similarity=0.105 Sum_probs=14.1
Q ss_pred CCCcEEEEcCCCCChHHHHH
Q 028110 140 RNHPVLIHCKRGKHRTGCLV 159 (213)
Q Consensus 140 ~~~PVLVHC~~Gk~RTG~vv 159 (213)
...+|++||..|-.|+...+
T Consensus 65 ~~~~iv~~C~~~g~rs~~a~ 84 (113)
T cd01443 65 GVKLAIFYCGSSQGRGPRAA 84 (113)
T ss_pred CCCEEEEECCCCCcccHHHH
Confidence 45789999997545765444
No 70
>cd01526 RHOD_ThiF Member of the Rhodanese Homology Domain superfamily. This CD includes several putative molybdopterin synthase sulfurylases including the molybdenum cofactor biosynthetic protein (CnxF) of Aspergillus nidulans and the molybdenum cofactor synthesis protein 3 (MOCS3) of Homo sapiens. These rhodanese-like domains are found C-terminal of the ThiF and MoeZ_MoeB domains.
Probab=81.12 E-value=7.4 Score=29.30 Aligned_cols=27 Identities=19% Similarity=0.359 Sum_probs=19.5
Q ss_pred CCCcEEEEcCCCCChHHHHHHHHHHHCCC
Q 028110 140 RNHPVLIHCKRGKHRTGCLVGCLRKLQKW 168 (213)
Q Consensus 140 ~~~PVLVHC~~Gk~RTG~vva~yl~~~gw 168 (213)
.+.||+++|..|. |+. .++.++...|.
T Consensus 71 ~~~~ivv~C~~G~-rs~-~aa~~L~~~G~ 97 (122)
T cd01526 71 KDSPIYVVCRRGN-DSQ-TAVRKLKELGL 97 (122)
T ss_pred CCCcEEEECCCCC-cHH-HHHHHHHHcCC
Confidence 5789999999985 765 44445555676
No 71
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=81.02 E-value=4.3 Score=37.21 Aligned_cols=26 Identities=15% Similarity=0.089 Sum_probs=18.3
Q ss_pred CcEEEEcCCCCChHHHHHHHHHHHCCCC
Q 028110 142 HPVLIHCKRGKHRTGCLVGCLRKLQKWC 169 (213)
Q Consensus 142 ~PVLVHC~~Gk~RTG~vva~yl~~~gws 169 (213)
.||+|||.+|. |+... +.+|.-+|++
T Consensus 333 ~~Ivv~C~sG~-RS~~A-a~~L~~~G~~ 358 (370)
T PRK05600 333 DNVVVYCASGI-RSADF-IEKYSHLGHE 358 (370)
T ss_pred CcEEEECCCCh-hHHHH-HHHHHHcCCC
Confidence 39999999996 77654 4555556653
No 72
>TIGR02981 phageshock_pspE phage shock operon rhodanese PspE. Members of this very narrowly defined protein family are proteins active as rhodanese (EC 2.8.1.1) and found in the extended variants of the phage shock protein (psp operon) in Escherichia coli and a few closely related species. Note that the designation phage shock protein PspE has been applied, incorrectly, in many instances where the genome lacks the phage shock regulon entirely.
Probab=80.99 E-value=3.5 Score=30.63 Aligned_cols=73 Identities=18% Similarity=0.246 Sum_probs=40.4
Q ss_pred HHHhcCCcEEEEcCCCCCCCchHhHhhhCCceEEEeeecCCCCCCCCCCHHHHHHHHHHHHhcCCCcEEEEcCCCCChHH
Q 028110 77 FLQTLRLRSIIYLCPEPYPEANTEFLKSNGIKLFQFAIEGHKEPFVNIPEDMIREALKVLLDVRNHPVLIHCKRGKHRTG 156 (213)
Q Consensus 77 ~L~~lGIktVI~Lr~e~~~~~~~~~~~~~Gi~~~~ipi~d~~~p~~~i~~~~i~~al~~i~d~~~~PVLVHC~~Gk~RTG 156 (213)
.|.-..-..+||+|+... +. . -|+| +. .+++...+...+..+....+.+|+++|..|. |+.
T Consensus 12 ~~~~~~~~~lIDvR~~~e------f~-~-----ghIp--gA----inip~~~l~~~l~~~~~~~~~~vvlyC~~G~-rS~ 72 (101)
T TIGR02981 12 ALPLFAAEHWIDVRIPEQ------YQ-Q-----EHIQ--GA----INIPLKEIKEHIATAVPDKNDTVKLYCNAGR-QSG 72 (101)
T ss_pred hhhhccCCEEEECCCHHH------Hh-c-----CCCC--CC----EECCHHHHHHHHHHhCCCCCCeEEEEeCCCH-HHH
Confidence 344446678999998521 10 0 1232 11 1233445555555443335679999999985 766
Q ss_pred HHHHHHHHHCCCC
Q 028110 157 CLVGCLRKLQKWC 169 (213)
Q Consensus 157 ~vva~yl~~~gws 169 (213)
..+ .++...|.+
T Consensus 73 ~aa-~~L~~~G~~ 84 (101)
T TIGR02981 73 MAK-DILLDMGYT 84 (101)
T ss_pred HHH-HHHHHcCCC
Confidence 554 444445653
No 73
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=79.82 E-value=4.1 Score=35.39 Aligned_cols=81 Identities=19% Similarity=0.223 Sum_probs=52.8
Q ss_pred EcCCC-ChhcH-HHHHhcCCcEEEEcCCC---CCCCchHhHhhhCCceEEEeeecCCCCC-CCC-CCHHHHHHHHHHHHh
Q 028110 66 RSGFP-DSANF-SFLQTLRLRSIIYLCPE---PYPEANTEFLKSNGIKLFQFAIEGHKEP-FVN-IPEDMIREALKVLLD 138 (213)
Q Consensus 66 rs~~p-~~~~~-~~L~~lGIktVI~Lr~e---~~~~~~~~~~~~~Gi~~~~ipi~d~~~p-~~~-i~~~~i~~al~~i~d 138 (213)
+.|.. +..++ .+|++.||+.|||.+.. ..+....+++++.||.|+++-=..+... ..+ ..-+.+.++.+.+.+
T Consensus 48 ~~G~lg~~~~l~~~l~~~~i~~vIDATHPfA~~is~na~~a~~~~~ipylR~eRp~~~~~~~~~~~~v~~~~eA~~~l~~ 127 (249)
T PF02571_consen 48 RVGRLGDEEGLAEFLRENGIDAVIDATHPFAAEISQNAIEACRELGIPYLRFERPSWQPEPDDNWHYVDSYEEAAELLKE 127 (249)
T ss_pred EECCCCCHHHHHHHHHhCCCcEEEECCCchHHHHHHHHHHHHhhcCcceEEEEcCCcccCCCCeEEEeCCHHHHHHHHhh
Confidence 44555 77776 68899999999999975 2334567778899999999843333211 101 112456677777765
Q ss_pred cCCCcEEE
Q 028110 139 VRNHPVLI 146 (213)
Q Consensus 139 ~~~~PVLV 146 (213)
..++.||+
T Consensus 128 ~~~~~ifl 135 (249)
T PF02571_consen 128 LGGGRIFL 135 (249)
T ss_pred cCCCCEEE
Confidence 44477777
No 74
>cd01534 4RHOD_Repeat_3 Member of the Rhodanese Homology Domain superfamily, repeat 3. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 3rd repeat which does not contain the putative catalytic Cys residue.
Probab=78.99 E-value=6.1 Score=28.20 Aligned_cols=28 Identities=14% Similarity=0.258 Sum_probs=19.2
Q ss_pred CCCcEEEEcCCCCChHHHHHHHHHHHCCCC
Q 028110 140 RNHPVLIHCKRGKHRTGCLVGCLRKLQKWC 169 (213)
Q Consensus 140 ~~~PVLVHC~~Gk~RTG~vva~yl~~~gws 169 (213)
++.+|+++|..|. |+.. ++.++...|.+
T Consensus 55 ~~~~iv~~c~~G~-rs~~-aa~~L~~~G~~ 82 (95)
T cd01534 55 RGARIVLADDDGV-RADM-TASWLAQMGWE 82 (95)
T ss_pred CCCeEEEECCCCC-hHHH-HHHHHHHcCCE
Confidence 4679999999986 6654 44445556664
No 75
>PF13292 DXP_synthase_N: 1-deoxy-D-xylulose-5-phosphate synthase; PDB: 2O1X_C 2O1S_B.
Probab=78.34 E-value=3 Score=36.79 Aligned_cols=41 Identities=27% Similarity=0.472 Sum_probs=30.9
Q ss_pred hHhhhCCceEEEeeecCCCCCCCCCCHHHHHHHHHHHHhcCCCcEEEEcC
Q 028110 100 EFLKSNGIKLFQFAIEGHKEPFVNIPEDMIREALKVLLDVRNHPVLIHCK 149 (213)
Q Consensus 100 ~~~~~~Gi~~~~ipi~d~~~p~~~i~~~~i~~al~~i~d~~~~PVLVHC~ 149 (213)
.++++.|++|+- |+++++ .+.+.++|+.+.+ .++||+||..
T Consensus 229 ~lFe~LG~~Y~G-PiDGHd-------l~~Li~~l~~~K~-~~gPvllHV~ 269 (270)
T PF13292_consen 229 NLFEELGFDYIG-PIDGHD-------LEELIEVLENAKD-IDGPVLLHVI 269 (270)
T ss_dssp CCCHHCT-EEEE-EEETT--------HHHHHHHHHHHCC-SSSEEEEEEE
T ss_pred HHHHHcCCeEEe-ccCCCC-------HHHHHHHHHHHhc-CCCCEEEEEe
Confidence 567889999987 899873 4567778888765 6899999963
No 76
>TIGR03865 PQQ_CXXCW PQQ-dependent catabolism-associated CXXCW motif protein. Members of this protein family have a CXXXCW motif, consistent with a possible role in redox cofactor binding. This protein family shows strong relationships by phylogenetic profiling and conserved gene neighborhoods with a transport system for alcohols metabolized by PQQ-dependent enzymes.
Probab=76.99 E-value=37 Score=27.26 Aligned_cols=29 Identities=7% Similarity=0.093 Sum_probs=19.3
Q ss_pred CCCcEEEEcCCCCChHHHHHHHHHHHCCCC
Q 028110 140 RNHPVLIHCKRGKHRTGCLVGCLRKLQKWC 169 (213)
Q Consensus 140 ~~~PVLVHC~~Gk~RTG~vva~yl~~~gws 169 (213)
++.||+++|..|..|+.. ++..+...|.+
T Consensus 115 ~d~~IVvYC~~G~~~S~~-aa~~L~~~G~~ 143 (162)
T TIGR03865 115 KDRPLVFYCLADCWMSWN-AAKRALAYGYS 143 (162)
T ss_pred CCCEEEEEECCCCHHHHH-HHHHHHhcCCc
Confidence 678999999988656654 34443445543
No 77
>PF14671 DSPn: Dual specificity protein phosphatase, N-terminal half; PDB: 1OHD_A 1OHE_A 1OHC_A.
Probab=76.80 E-value=5.9 Score=31.63 Aligned_cols=40 Identities=10% Similarity=0.253 Sum_probs=25.5
Q ss_pred CCcEEEEcCCCCC--h--HHHHHHHHHHH-CCCCHHHHHHHHHhH
Q 028110 141 NHPVLIHCKRGKH--R--TGCLVGCLRKL-QKWCLSSVFDEYQRF 180 (213)
Q Consensus 141 ~~PVLVHC~~Gk~--R--TG~vva~yl~~-~gws~e~al~ey~~~ 180 (213)
.+..+|||++... | +.+++++|+++ +||+.++|+.-+...
T Consensus 66 ~~k~iv~yts~d~~kRaNAA~Lig~y~Vi~l~~spe~A~~~l~~~ 110 (141)
T PF14671_consen 66 KKKKIVHYTSSDPKKRANAAFLIGAYAVIYLGMSPEEAYKPLASI 110 (141)
T ss_dssp TTSEEEEEE-S-HHHHHHHHHHHHHHHHHTS---HHHHHHHHTTT
T ss_pred cCCeEEEECCCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhc
Confidence 4677788877654 3 45778889886 899999998765543
No 78
>PRK11784 tRNA 2-selenouridine synthase; Provisional
Probab=76.77 E-value=12 Score=33.98 Aligned_cols=29 Identities=31% Similarity=0.324 Sum_probs=20.0
Q ss_pred CCCcEEEEcCCCCChHHHHHHHHHHHCCCC
Q 028110 140 RNHPVLIHCKRGKHRTGCLVGCLRKLQKWC 169 (213)
Q Consensus 140 ~~~PVLVHC~~Gk~RTG~vva~yl~~~gws 169 (213)
.+.+|+|+|..|-.|++.++-.+ ...|+.
T Consensus 87 ~~~~ivvyC~rgG~RS~~aa~~L-~~~G~~ 115 (345)
T PRK11784 87 ANPRGLLYCWRGGLRSGSVQQWL-KEAGID 115 (345)
T ss_pred CCCeEEEEECCCChHHHHHHHHH-HHcCCC
Confidence 57899999975545988765444 445653
No 79
>PF02126 PTE: Phosphotriesterase family; InterPro: IPR001559 Synonym(s): Paraoxonase, A-esterase, Aryltriphosphatase, Phosphotriesterase, Paraoxon hydrolase Bacteria such as Brevundimonas diminuta (Pseudomonas diminuta) harbour a plasmid that carries the gene for Aryldialkylphosphatase (3.1.8.1 from EC) (PTE) (also known as parathion hydrolase). This enzyme has attracted interest because of its potential use in the detoxification of chemical waste and warfare agents and its ability to degrade agricultural pesticides such as parathion. It acts specifically on synthetic organophosphate triesters and phosphorofluoridates. It does not seem to have a natural occuring substrate and may thus have optimally evolved for utilizing paraoxon. Aryldialkylphosphatase belongs to a family [, ] of enzymes that possess a binuclear zinc metal centre at their active site. The two zinc ions are coordinated by six different residues, six of which being histidines. This family so far includes, in addition to the parathion hydrolase, the following proteins: Escherichia coli protein Php, the substrate of which is not yet known. Mycobacterium tuberculosis phosphotriesterase homology protein Rv0230C. Mammalian phosphotriesterase related protein (PTER) (RPR-1). ; GO: 0008270 zinc ion binding, 0016788 hydrolase activity, acting on ester bonds, 0009056 catabolic process; PDB: 3MSR_A 3OVG_D 3K2G_C 1BF6_B 3OQE_A 3C86_A 3SO7_A 2D2G_A 2R1P_A 2D2H_A ....
Probab=76.69 E-value=2.9 Score=37.46 Aligned_cols=99 Identities=18% Similarity=0.114 Sum_probs=52.9
Q ss_pred cHHHHHhcCCcEEEEcCCCCCC---CchHhHhhhCCceEEEe---eecCCCCC---------------------------
Q 028110 74 NFSFLQTLRLRSIIYLCPEPYP---EANTEFLKSNGIKLFQF---AIEGHKEP--------------------------- 120 (213)
Q Consensus 74 ~~~~L~~lGIktVI~Lr~e~~~---~~~~~~~~~~Gi~~~~i---pi~d~~~p--------------------------- 120 (213)
++..++++|.+|||+.++-..- ....+..++.|+..+-- .......+
T Consensus 43 El~~~k~~Gg~tiVd~T~~g~GRd~~~l~~is~~tGv~II~~TG~y~~~~~p~~~~~~s~e~la~~~i~Ei~~GidgT~i 122 (308)
T PF02126_consen 43 ELKEFKAAGGRTIVDATPIGLGRDVEALREISRRTGVNIIASTGFYKEPFYPEWVREASVEELADLFIREIEEGIDGTGI 122 (308)
T ss_dssp HHHHHHHTTEEEEEE--SGGGTB-HHHHHHHHHHHT-EEEEEEEE-SGGCSCHHHHTSHHHHHHHHHHHHHHT-STTSSB
T ss_pred HHHHHHHcCCCEEEecCCcccCcCHHHHHHHHHHhCCeEEEeCCCCccccCChhhhcCCHHHHHHHHHHHHHhcCCCCcc
Confidence 5678889999999999985321 23455555667655431 11110000
Q ss_pred ----------CCCCCH--HHHHHHHHHHHhcCCCcEEEEcCCCCChHHHHHHHHHHHCCCCHHHH
Q 028110 121 ----------FVNIPE--DMIREALKVLLDVRNHPVLIHCKRGKHRTGCLVGCLRKLQKWCLSSV 173 (213)
Q Consensus 121 ----------~~~i~~--~~i~~al~~i~d~~~~PVLVHC~~Gk~RTG~vva~yl~~~gws~e~a 173 (213)
...+++ +.+-++........+-||.+||..|. |.|.-++-++.-.|++.+.+
T Consensus 123 kaG~Ik~~~~~~~it~~E~k~lrAaa~A~~~TG~pI~~H~~~g~-~~~~e~~~il~e~Gv~~~rv 186 (308)
T PF02126_consen 123 KAGIIKEIGSSNPITPLEEKVLRAAARAHKETGAPISTHTGRGT-RMGLEQLDILEEEGVDPSRV 186 (308)
T ss_dssp -ESEEEEEEBTTBCEHHHHHHHHHHHHHHHHHT-EEEEEESTTG-TCHHHHHHHHHHTT--GGGE
T ss_pred chhheeEeeccCCCCHHHHHHHHHHHHHHHHhCCeEEEcCCCCC-cCHHHHHHHHHHcCCChhHe
Confidence 012332 33333433333335889999998886 57777777777677765544
No 80
>PRK10287 thiosulfate:cyanide sulfurtransferase; Provisional
Probab=76.37 E-value=7.9 Score=28.95 Aligned_cols=42 Identities=14% Similarity=0.276 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHhcCCCcEEEEcCCCCChHHHHHHHHHHHCCCC
Q 028110 126 EDMIREALKVLLDVRNHPVLIHCKRGKHRTGCLVGCLRKLQKWC 169 (213)
Q Consensus 126 ~~~i~~al~~i~d~~~~PVLVHC~~Gk~RTG~vva~yl~~~gws 169 (213)
...+.+.+..+....+.+|+++|..| .|+...+- .+...|.+
T Consensus 45 ~~~l~~~l~~l~~~~~~~IVlyC~~G-~rS~~aa~-~L~~~G~~ 86 (104)
T PRK10287 45 LKEVKERIATAVPDKNDTVKLYCNAG-RQSGQAKE-ILSEMGYT 86 (104)
T ss_pred HHHHHHHHHhcCCCCCCeEEEEeCCC-hHHHHHHH-HHHHcCCC
Confidence 34455445444323567899999988 37665544 33445553
No 81
>PRK15378 inositol phosphate phosphatase SopB; Provisional
Probab=75.79 E-value=2.5 Score=40.27 Aligned_cols=36 Identities=25% Similarity=0.364 Sum_probs=22.2
Q ss_pred HHHHHHHHHHhcCCCcEEEEcCCCCChHHHHHHHHH
Q 028110 128 MIREALKVLLDVRNHPVLIHCKRGKHRTGCLVGCLR 163 (213)
Q Consensus 128 ~i~~al~~i~d~~~~PVLVHC~~Gk~RTG~vva~yl 163 (213)
.+.+-+..|...-+---.+-|++||||||++=+-.-
T Consensus 443 k~aqRvamLa~eigavP~wNCkSGKDRTGmmD~eiK 478 (564)
T PRK15378 443 KLAQRLAMLAYEIDAVPAWNCKSGKDRTGMMDSEIK 478 (564)
T ss_pred HHHHHHHHHHhhhcceeeeccCCCCccccchHHHHH
Confidence 344334444332233337899999999998866543
No 82
>cd01524 RHOD_Pyr_redox Member of the Rhodanese Homology Domain superfamily. Included in this CD are the Lactococcus lactis NADH oxidase, Bacillus cereus NADH dehydrogenase, and Bacteroides thetaiotaomicron pyridine nucleotide-disulphide oxidoreductase, and similar rhodanese-like domains found C-terminal of the pyridine nucleotide-disulphide oxidoreductase (Pyr-redox) domain and the Pyr-redox dimerization domain.
Probab=75.09 E-value=13 Score=26.16 Aligned_cols=39 Identities=18% Similarity=0.399 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHhcCCCcEEEEcCCCCChHHHHHHHHHHHCCC
Q 028110 126 EDMIREALKVLLDVRNHPVLIHCKRGKHRTGCLVGCLRKLQKW 168 (213)
Q Consensus 126 ~~~i~~al~~i~d~~~~PVLVHC~~Gk~RTG~vva~yl~~~gw 168 (213)
.+.+...+..+ ..+.+|+++|..|. |+ ..++..++..|.
T Consensus 38 ~~~~~~~~~~~--~~~~~vvl~c~~g~-~a-~~~a~~L~~~G~ 76 (90)
T cd01524 38 LDELRDRLNEL--PKDKEIIVYCAVGL-RG-YIAARILTQNGF 76 (90)
T ss_pred HHHHHHHHHhc--CCCCcEEEEcCCCh-hH-HHHHHHHHHCCC
Confidence 34444444333 24679999999874 44 444545455554
No 83
>PRK05320 rhodanese superfamily protein; Provisional
Probab=74.72 E-value=6.8 Score=34.14 Aligned_cols=28 Identities=14% Similarity=0.060 Sum_probs=20.1
Q ss_pred CCCcEEEEcCCCCChHHHHHHHHHHHCCCC
Q 028110 140 RNHPVLIHCKRGKHRTGCLVGCLRKLQKWC 169 (213)
Q Consensus 140 ~~~PVLVHC~~Gk~RTG~vva~yl~~~gws 169 (213)
++.||+++|..|. |+...+ .+|+..|.+
T Consensus 174 kdk~IvvyC~~G~-Rs~~Aa-~~L~~~Gf~ 201 (257)
T PRK05320 174 AGKTVVSFCTGGI-RCEKAA-IHMQEVGID 201 (257)
T ss_pred CCCeEEEECCCCH-HHHHHH-HHHHHcCCc
Confidence 5789999999996 776654 455555653
No 84
>COG3473 Maleate cis-trans isomerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=73.89 E-value=37 Score=29.25 Aligned_cols=93 Identities=20% Similarity=0.224 Sum_probs=63.1
Q ss_pred hcHHHHHhcCCcEEEEcCCC--CCCCchHhHhhhCCceEEEeee---cCCCCCCCCCCHHHHHHHHHHHHhcCCCcEEEE
Q 028110 73 ANFSFLQTLRLRSIIYLCPE--PYPEANTEFLKSNGIKLFQFAI---EGHKEPFVNIPEDMIREALKVLLDVRNHPVLIH 147 (213)
Q Consensus 73 ~~~~~L~~lGIktVI~Lr~e--~~~~~~~~~~~~~Gi~~~~ipi---~d~~~p~~~i~~~~i~~al~~i~d~~~~PVLVH 147 (213)
+-++.|+.+|++.|.-|+|. +....+.++++++|++.+.+-. .|+-+ -..+++..+.++.+.+....--.+++-
T Consensus 108 Avv~aL~al~a~ri~vlTPY~~evn~~e~ef~~~~Gfeiv~~~~Lgi~dn~e-igr~~P~~~y~lAk~~~~~~~DaiFiS 186 (238)
T COG3473 108 AVVEALNALGAQRISVLTPYIDEVNQREIEFLEANGFEIVDFKGLGITDNLE-IGRQEPWAVYRLAKEVFTPDADAIFIS 186 (238)
T ss_pred HHHHHHHhhCcceEEEeccchhhhhhHHHHHHHhCCeEEEEeeccCCcccch-hcccChHHHHHHHHHhcCCCCCeEEEE
Confidence 46789999999999999995 5556789999999999888643 33321 012344445545555554444579999
Q ss_pred cCCCCChHHHHHHHHHHHCCC
Q 028110 148 CKRGKHRTGCLVGCLRKLQKW 168 (213)
Q Consensus 148 C~~Gk~RTG~vva~yl~~~gw 168 (213)
|+.= ||--++..+-...|.
T Consensus 187 CTnl--Rt~eii~~lE~~~G~ 205 (238)
T COG3473 187 CTNL--RTFEIIEKLERDTGV 205 (238)
T ss_pred eecc--ccHHHHHHHHHHhCC
Confidence 9873 776666666554444
No 85
>PLN02225 1-deoxy-D-xylulose-5-phosphate synthase
Probab=73.43 E-value=5.3 Score=39.82 Aligned_cols=47 Identities=19% Similarity=0.391 Sum_probs=36.5
Q ss_pred hHhhhCCceEEEeeecCCCCCCCCCCHHHHHHHHHHHHhcC-CCcEEEEcCCCCCh
Q 028110 100 EFLKSNGIKLFQFAIEGHKEPFVNIPEDMIREALKVLLDVR-NHPVLIHCKRGKHR 154 (213)
Q Consensus 100 ~~~~~~Gi~~~~ipi~d~~~p~~~i~~~~i~~al~~i~d~~-~~PVLVHC~~Gk~R 154 (213)
.++++.|++|+- |+++++ -+.+.++|+.+.+.. ++||+||-..-|++
T Consensus 320 ~lFe~lG~~Y~G-pvDGHd-------i~~Li~~l~~~k~~~~~~PvlvHv~T~KGk 367 (701)
T PLN02225 320 TLFEELGLYYIG-PVDGHN-------IEDLVCVLREVSSLDSMGPVLVHVITEENR 367 (701)
T ss_pred CcHHHcCCeEEC-ccCCCC-------HHHHHHHHHHHHcCCCCCCEEEEEEecCCC
Confidence 467889999886 888873 456777888887643 59999999887775
No 86
>TIGR02571 ComEB ComE operon protein 2. This protein is found in the ComE operon for "late competence" as characterized in B. subtilis. Proteins in this family contain homology to a cytidine/deoxycytidine deaminase domain family (pfam00383), and may carry out this activity.
Probab=72.98 E-value=12 Score=30.14 Aligned_cols=51 Identities=16% Similarity=0.224 Sum_probs=39.9
Q ss_pred eEEcCCCChhcHHHHHhcCCcEEEEcCCCCCCCchHhHhhhCCceEEEeee
Q 028110 64 IFRSGFPDSANFSFLQTLRLRSIIYLCPEPYPEANTEFLKSNGIKLFQFAI 114 (213)
Q Consensus 64 Lyrs~~p~~~~~~~L~~lGIktVI~Lr~e~~~~~~~~~~~~~Gi~~~~ipi 114 (213)
||.+-.|-..=...|...||+.|+.......+..-.+++++.||++.+++.
T Consensus 90 lYvT~ePC~~Ca~ai~~agI~~Vvy~~~~~~~~~~~~~l~~~gi~v~~~~~ 140 (151)
T TIGR02571 90 IYVTHFPCLQCTKSIIQAGIKKIYYAQDYHNHPYAIELFEQAGVELKKVPF 140 (151)
T ss_pred EEEeCCCcHHHHHHHHHhCCCEEEEccCCCCcHHHHHHHHHCCCEEEEeCc
Confidence 898888888766788889999999975433222346688999999999974
No 87
>PLN02582 1-deoxy-D-xylulose-5-phosphate synthase
Probab=72.38 E-value=7.4 Score=38.68 Aligned_cols=45 Identities=24% Similarity=0.438 Sum_probs=33.1
Q ss_pred HhhhCCceEEEeeecCCCCCCCCCCHHHHHHHHHHHHhcC-CCcEEEEcCCCCC
Q 028110 101 FLKSNGIKLFQFAIEGHKEPFVNIPEDMIREALKVLLDVR-NHPVLIHCKRGKH 153 (213)
Q Consensus 101 ~~~~~Gi~~~~ipi~d~~~p~~~i~~~~i~~al~~i~d~~-~~PVLVHC~~Gk~ 153 (213)
++++.|++|+. |+++++ .+.+.++|+.+.+.. ++|++|||..=|+
T Consensus 277 ~fe~~G~~y~g-~iDGHd-------~~~L~~al~~~k~~~~~~P~vihv~T~KG 322 (677)
T PLN02582 277 LFEELGLYYIG-PVDGHN-------IDDLVTILREVKSTKTTGPVLIHVVTEKG 322 (677)
T ss_pred hHHHcCCeEEe-eeCCCC-------HHHHHHHHHHHHhcCCCCCEEEEEEecCC
Confidence 46778888775 788763 467888888887643 7999999965444
No 88
>COG1154 Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme metabolism / Lipid metabolism]
Probab=72.02 E-value=5.9 Score=38.75 Aligned_cols=46 Identities=26% Similarity=0.424 Sum_probs=35.7
Q ss_pred hHhhhCCceEEEeeecCCCCCCCCCCHHHHHHHHHHHHhcCCCcEEEEcCCCCCh
Q 028110 100 EFLKSNGIKLFQFAIEGHKEPFVNIPEDMIREALKVLLDVRNHPVLIHCKRGKHR 154 (213)
Q Consensus 100 ~~~~~~Gi~~~~ipi~d~~~p~~~i~~~~i~~al~~i~d~~~~PVLVHC~~Gk~R 154 (213)
.++++.|++|+. |+++++ .+.+..+|+.+.+ .++||++|+..=|++
T Consensus 237 ~lFeelGf~YiG-PiDGHn-------i~~Li~~Lk~~kd-~~gPvllHv~T~KGK 282 (627)
T COG1154 237 TLFEELGFNYIG-PIDGHN-------LEELIPTLKNAKD-LKGPVLLHVVTKKGK 282 (627)
T ss_pred hhHHHhCCeeEC-CcCCCC-------HHHHHHHHHHHhc-CCCCEEEEEEecCCC
Confidence 367888999886 888873 4567778888876 789999999776654
No 89
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=71.61 E-value=31 Score=32.51 Aligned_cols=87 Identities=14% Similarity=0.045 Sum_probs=51.5
Q ss_pred HHHHhcC--CcEEEEcCCCCCCC-----chHhHhhhCCceEEEeeecCCCCCCCCCCHHHHHHHHHHHHhcCCCcEEEEc
Q 028110 76 SFLQTLR--LRSIIYLCPEPYPE-----ANTEFLKSNGIKLFQFAIEGHKEPFVNIPEDMIREALKVLLDVRNHPVLIHC 148 (213)
Q Consensus 76 ~~L~~lG--IktVI~Lr~e~~~~-----~~~~~~~~~Gi~~~~ipi~d~~~p~~~i~~~~i~~al~~i~d~~~~PVLVHC 148 (213)
+..+..| +..+|+-+..+... .....+.+.|+..+ .|.|... -+++....+.++.|.+.-+-||.+||
T Consensus 132 ~a~kk~G~h~q~~i~YT~sPvHt~e~yv~~akel~~~g~DSI--ciKDmaG---lltP~~ayelVk~iK~~~~~pv~lHt 206 (472)
T COG5016 132 KAAKKHGAHVQGTISYTTSPVHTLEYYVELAKELLEMGVDSI--CIKDMAG---LLTPYEAYELVKAIKKELPVPVELHT 206 (472)
T ss_pred HHHHhcCceeEEEEEeccCCcccHHHHHHHHHHHHHcCCCEE--Eeecccc---cCChHHHHHHHHHHHHhcCCeeEEec
Confidence 3455555 44445544443321 23333455777554 5555421 12344555566666665578999999
Q ss_pred CCCCChHHHHHHHHHHH--CCCCH
Q 028110 149 KRGKHRTGCLVGCLRKL--QKWCL 170 (213)
Q Consensus 149 ~~Gk~RTG~vva~yl~~--~gws~ 170 (213)
+. .||+-.++|++. .|++.
T Consensus 207 H~---TsG~a~m~ylkAvEAGvD~ 227 (472)
T COG5016 207 HA---TSGMAEMTYLKAVEAGVDG 227 (472)
T ss_pred cc---ccchHHHHHHHHHHhCcch
Confidence 87 788999999984 57754
No 90
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=71.13 E-value=27 Score=29.52 Aligned_cols=73 Identities=12% Similarity=-0.008 Sum_probs=48.2
Q ss_pred HHHHHhcCCcEEEEcCC-CC--CC----CchHhHhhhCCceEEEeeecCCCCCCCCCCHHHHHHHHHHHHhcCC-CcEEE
Q 028110 75 FSFLQTLRLRSIIYLCP-EP--YP----EANTEFLKSNGIKLFQFAIEGHKEPFVNIPEDMIREALKVLLDVRN-HPVLI 146 (213)
Q Consensus 75 ~~~L~~lGIktVI~Lr~-e~--~~----~~~~~~~~~~Gi~~~~ipi~d~~~p~~~i~~~~i~~al~~i~d~~~-~PVLV 146 (213)
++.+++.|+...+++.. .. .. ....+.+.+.|+..+.++-... .++++++.+.++.+.+..+ -|+-+
T Consensus 121 i~~a~~~G~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~i~l~Dt~G-----~~~P~~v~~li~~l~~~~~~~~~~~ 195 (265)
T cd03174 121 IEAAKEAGLEVEGSLEDAFGCKTDPEYVLEVAKALEEAGADEISLKDTVG-----LATPEEVAELVKALREALPDVPLGL 195 (265)
T ss_pred HHHHHHCCCeEEEEEEeecCCCCCHHHHHHHHHHHHHcCCCEEEechhcC-----CcCHHHHHHHHHHHHHhCCCCeEEE
Confidence 35778899999999943 22 21 1234445678988887652221 2356789989998887433 78888
Q ss_pred EcCCCC
Q 028110 147 HCKRGK 152 (213)
Q Consensus 147 HC~~Gk 152 (213)
||+.-.
T Consensus 196 H~Hn~~ 201 (265)
T cd03174 196 HTHNTL 201 (265)
T ss_pred EeCCCC
Confidence 887643
No 91
>PLN02723 3-mercaptopyruvate sulfurtransferase
Probab=69.54 E-value=10 Score=33.92 Aligned_cols=42 Identities=10% Similarity=0.188 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHhcCCCcEEEEcCCCCChHHHHHHHHHHHCCCC
Q 028110 126 EDMIREALKVLLDVRNHPVLIHCKRGKHRTGCLVGCLRKLQKWC 169 (213)
Q Consensus 126 ~~~i~~al~~i~d~~~~PVLVHC~~Gk~RTG~vva~yl~~~gws 169 (213)
.+.+++.+...-=..+.+|+++|..|. | +.+++..|...|.+
T Consensus 254 ~~el~~~~~~~gi~~~~~iv~yC~sG~-~-A~~~~~~L~~~G~~ 295 (320)
T PLN02723 254 AEELKKRFEQEGISLDSPIVASCGTGV-T-ACILALGLHRLGKT 295 (320)
T ss_pred HHHHHHHHHhcCCCCCCCEEEECCcHH-H-HHHHHHHHHHcCCC
Confidence 455665555431135789999998874 4 45555555667764
No 92
>cd01532 4RHOD_Repeat_1 Member of the Rhodanese Homology Domain superfamily, repeat 1. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 1st repeat which does not contain the putative catalytic Cys residue.
Probab=68.83 E-value=17 Score=25.75 Aligned_cols=30 Identities=10% Similarity=0.112 Sum_probs=19.1
Q ss_pred CCCcEEEEcCCCCChHHHHHHHHHHHCCCC
Q 028110 140 RNHPVLIHCKRGKHRTGCLVGCLRKLQKWC 169 (213)
Q Consensus 140 ~~~PVLVHC~~Gk~RTG~vva~yl~~~gws 169 (213)
.+.||+++|..|.......++-.++..|.+
T Consensus 49 ~~~~ivl~c~~G~~~~s~~aa~~L~~~G~~ 78 (92)
T cd01532 49 RDTPIVVYGEGGGEDLAPRAARRLSELGYT 78 (92)
T ss_pred CCCeEEEEeCCCCchHHHHHHHHHHHcCcc
Confidence 478999999998633344555444445543
No 93
>cd01449 TST_Repeat_2 Thiosulfate sulfurtransferase (TST), C-terminal, catalytic domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the second repeat. Only the second repeat contains the catalytically active Cys residue.
Probab=67.53 E-value=9.7 Score=28.03 Aligned_cols=41 Identities=20% Similarity=0.271 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHhcCCCcEEEEcCCCCChHHHHHHHHHHHCCCC
Q 028110 127 DMIREALKVLLDVRNHPVLIHCKRGKHRTGCLVGCLRKLQKWC 169 (213)
Q Consensus 127 ~~i~~al~~i~d~~~~PVLVHC~~Gk~RTG~vva~yl~~~gws 169 (213)
+.+.+.+..+.-..+.+|+++|..|. |+..+ +.++...|..
T Consensus 64 ~~~~~~~~~~~~~~~~~iv~yc~~g~-~s~~~-~~~l~~~G~~ 104 (118)
T cd01449 64 EELRALFAALGITPDKPVIVYCGSGV-TACVL-LLALELLGYK 104 (118)
T ss_pred HHHHHHHHHcCCCCCCCEEEECCcHH-HHHHH-HHHHHHcCCC
Confidence 44555554432235789999999874 66544 3444445654
No 94
>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional
Probab=66.33 E-value=13 Score=32.44 Aligned_cols=43 Identities=12% Similarity=0.024 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHhcCCCcEEEEcCCCCChHHHHHHHHHHHCCCCH
Q 028110 126 EDMIREALKVLLDVRNHPVLIHCKRGKHRTGCLVGCLRKLQKWCL 170 (213)
Q Consensus 126 ~~~i~~al~~i~d~~~~PVLVHC~~Gk~RTG~vva~yl~~~gws~ 170 (213)
.+.+++.+...--..+.||+++|..|. |+ .+++.+|...|...
T Consensus 216 ~~~l~~~~~~~g~~~~~~ii~yC~~G~-~A-~~~~~~l~~~G~~~ 258 (281)
T PRK11493 216 TDELDAIFFGRGVSFDRPIIASCGSGV-TA-AVVVLALATLDVPN 258 (281)
T ss_pred HHHHHHHHHhcCCCCCCCEEEECCcHH-HH-HHHHHHHHHcCCCC
Confidence 344554443221125679999998875 55 44455556677653
No 95
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=65.11 E-value=7.5 Score=33.75 Aligned_cols=79 Identities=19% Similarity=0.196 Sum_probs=49.4
Q ss_pred EcCCC-ChhcH-HHHHhcCCcEEEEcCCC---CCCCchHhHhhhCCceEEEeeecCCCC-CCCC-CCHHHHHHHHHHHHh
Q 028110 66 RSGFP-DSANF-SFLQTLRLRSIIYLCPE---PYPEANTEFLKSNGIKLFQFAIEGHKE-PFVN-IPEDMIREALKVLLD 138 (213)
Q Consensus 66 rs~~p-~~~~~-~~L~~lGIktVI~Lr~e---~~~~~~~~~~~~~Gi~~~~ipi~d~~~-p~~~-i~~~~i~~al~~i~d 138 (213)
+.|.. +..++ .+|++.+|+.|||.+.. .......+++++.||.|+++-=..+.. +... ..-+.+.++.+.+.+
T Consensus 47 ~~G~l~~~~~l~~~l~~~~i~~VIDATHPfA~~is~~a~~ac~~~~ipyiR~eR~~~~~~~~~~~~~v~s~~~a~~~l~~ 126 (248)
T PRK08057 47 RVGGFGGAEGLAAYLREEGIDLVIDATHPYAAQISANAAAACRALGIPYLRLERPSWLPQPGDRWIEVDDIEEAAEALAP 126 (248)
T ss_pred EECCCCCHHHHHHHHHHCCCCEEEECCCccHHHHHHHHHHHHHHhCCcEEEEeCCCcCCCCCCCEEEECCHHHHHHHhhc
Confidence 44556 76666 58999999999999974 223456778889999999884322211 1000 111345566666654
Q ss_pred cCCCcEEE
Q 028110 139 VRNHPVLI 146 (213)
Q Consensus 139 ~~~~PVLV 146 (213)
. +.||+
T Consensus 127 ~--~~vll 132 (248)
T PRK08057 127 F--RRVLL 132 (248)
T ss_pred c--CCEEE
Confidence 3 56666
No 96
>cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily. Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine.
Probab=64.51 E-value=22 Score=24.88 Aligned_cols=40 Identities=23% Similarity=0.390 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHhcCCCcEEEEcCCCCChHHHHHHHHHHHCCCC
Q 028110 126 EDMIREALKVLLDVRNHPVLIHCKRGKHRTGCLVGCLRKLQKWC 169 (213)
Q Consensus 126 ~~~i~~al~~i~d~~~~PVLVHC~~Gk~RTG~vva~yl~~~gws 169 (213)
...+.+.+..+ ..+.||+|||..|. |+ ..++.++...|.+
T Consensus 43 ~~~~~~~~~~~--~~~~~ivv~c~~g~-~s-~~a~~~l~~~G~~ 82 (96)
T cd01444 43 EDSLDDWLGDL--DRDRPVVVYCYHGN-SS-AQLAQALREAGFT 82 (96)
T ss_pred HHHHHHHHhhc--CCCCCEEEEeCCCC-hH-HHHHHHHHHcCCc
Confidence 34454444332 36789999999764 54 4445555555653
No 97
>PF05925 IpgD: Enterobacterial virulence protein IpgD; InterPro: IPR008108 Some Gram-negative animal enteropathogens express a specialised secretion system to directly "inject" exotoxins into the cytoplasm of host cells. Dubbed the type III secretion system, it is of specific interest to researchers, as the components of such a system are only expressed in pathogenic strains []. The system is composed of structural proteins and exotoxin effectors; these are often encoded on large virulence plasmids or on the bacterial chromosome itself []. The Shigella flexneri invasion plasmid antigen (ipa) genes are found on such a plasmid, and are arranged into an operon. Directly upstream of this operon is another cluster of type III genes, termed ipgD, E and F []. Deletion mutational studies of all three genes showed they were essential for virulence in S. flexneri, and that IpgD is secreted by the type III needle to the outside of the bacterial cell []. Further analysis of the ipg operon confirmed that the IpgD gene product is chaperoned by the IpgE protein while in the bacterial cytoplasm []. More recently, a large study into the spread of the ipa/mxi/ipg pathogenicity islands through their relevant plasmid has revealed that homologues exist in many different Shigella strains, as well as enteroinvasive Escherichia coli and Salmonella spp []. There is evidence that the genes were acquired from Shigella through lateral transfer, like most of the other type III secretion system virulence plasmids.; GO: 0016791 phosphatase activity, 0009405 pathogenesis; PDB: 4DID_B.
Probab=63.98 E-value=2.3 Score=40.87 Aligned_cols=23 Identities=35% Similarity=0.443 Sum_probs=0.0
Q ss_pred CCCcEEEEcCCCCChHHHHHHHH
Q 028110 140 RNHPVLIHCKRGKHRTGCLVGCL 162 (213)
Q Consensus 140 ~~~PVLVHC~~Gk~RTG~vva~y 162 (213)
.+....+-|++||||||++-+-.
T Consensus 452 iGavp~~NCKSGKDRTG~lD~ei 474 (559)
T PF05925_consen 452 IGAVPCWNCKSGKDRTGMLDAEI 474 (559)
T ss_dssp -----------------------
T ss_pred hCCeeeccCccCCccccccHHHH
Confidence 46678889999999999876544
No 98
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=63.75 E-value=61 Score=28.18 Aligned_cols=81 Identities=10% Similarity=0.055 Sum_probs=49.8
Q ss_pred HHHHHhcCCcEEEEcCCC-CCC-C---chHhHhhhCCceEEEeeecCCCCCCCCCCHHHHHHHHHHHHhcCC--CcEEEE
Q 028110 75 FSFLQTLRLRSIIYLCPE-PYP-E---ANTEFLKSNGIKLFQFAIEGHKEPFVNIPEDMIREALKVLLDVRN--HPVLIH 147 (213)
Q Consensus 75 ~~~L~~lGIktVI~Lr~e-~~~-~---~~~~~~~~~Gi~~~~ipi~d~~~p~~~i~~~~i~~al~~i~d~~~--~PVLVH 147 (213)
++..+++|++..+++... ..+ + ...+.+.+.|+..+.++=... .+.++++.+.++.+.+.-+ -|+-+|
T Consensus 115 i~~ak~~G~~v~~~~~~a~~~~~~~~~~~~~~~~~~g~~~i~l~DT~G-----~~~P~~v~~lv~~l~~~~~~~~~i~~H 189 (266)
T cd07944 115 IKAIKEKGYEVFFNLMAISGYSDEELLELLELVNEIKPDVFYIVDSFG-----SMYPEDIKRIISLLRSNLDKDIKLGFH 189 (266)
T ss_pred HHHHHHCCCeEEEEEEeecCCCHHHHHHHHHHHHhCCCCEEEEecCCC-----CCCHHHHHHHHHHHHHhcCCCceEEEE
Confidence 356778899988887542 121 1 223334567887776542221 2356788888888876433 789999
Q ss_pred cCCCCChHHHHHHHHH
Q 028110 148 CKRGKHRTGCLVGCLR 163 (213)
Q Consensus 148 C~~Gk~RTG~vva~yl 163 (213)
|+.- .|+..|-.+
T Consensus 190 ~Hn~---~Gla~AN~l 202 (266)
T cd07944 190 AHNN---LQLALANTL 202 (266)
T ss_pred eCCC---ccHHHHHHH
Confidence 9864 445444444
No 99
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=63.05 E-value=25 Score=30.27 Aligned_cols=73 Identities=16% Similarity=0.233 Sum_probs=45.2
Q ss_pred HHHHHhcCCcEEEEcCCC-CCC-C---chHhHhhhCCceEEEeeecCCCCCCCCCCHHHHHHHHHHHHhcCCC-cEEEEc
Q 028110 75 FSFLQTLRLRSIIYLCPE-PYP-E---ANTEFLKSNGIKLFQFAIEGHKEPFVNIPEDMIREALKVLLDVRNH-PVLIHC 148 (213)
Q Consensus 75 ~~~L~~lGIktVI~Lr~e-~~~-~---~~~~~~~~~Gi~~~~ipi~d~~~p~~~i~~~~i~~al~~i~d~~~~-PVLVHC 148 (213)
++..++.|+...+++... ..+ + ...+.+.+.|...+.++ |... .+.++++.+.++.+.+.-+. |+-+||
T Consensus 118 i~~ak~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~G~d~i~l~--DT~G---~~~P~~v~~lv~~l~~~~~~~~l~~H~ 192 (263)
T cd07943 118 IGAARKLGMDVVGFLMMSHMASPEELAEQAKLMESYGADCVYVT--DSAG---AMLPDDVRERVRALREALDPTPVGFHG 192 (263)
T ss_pred HHHHHHCCCeEEEEEEeccCCCHHHHHHHHHHHHHcCCCEEEEc--CCCC---CcCHHHHHHHHHHHHHhCCCceEEEEe
Confidence 356678898888887321 111 1 12333456788776553 3211 23567899899988765444 899999
Q ss_pred CCCC
Q 028110 149 KRGK 152 (213)
Q Consensus 149 ~~Gk 152 (213)
+.-.
T Consensus 193 Hn~~ 196 (263)
T cd07943 193 HNNL 196 (263)
T ss_pred cCCc
Confidence 8644
No 100
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=60.98 E-value=18 Score=31.55 Aligned_cols=48 Identities=19% Similarity=0.290 Sum_probs=37.4
Q ss_pred EEcCCCChhcH-HHHHhcCCcEEEEcCCC---CCCCchHhHhhhCCceEEEe
Q 028110 65 FRSGFPDSANF-SFLQTLRLRSIIYLCPE---PYPEANTEFLKSNGIKLFQF 112 (213)
Q Consensus 65 yrs~~p~~~~~-~~L~~lGIktVI~Lr~e---~~~~~~~~~~~~~Gi~~~~i 112 (213)
.+.+..+..++ ++|++.+++.|||.... ..+....+++++.||.|+++
T Consensus 47 v~~g~l~~~~l~~~l~~~~i~~VIDAtHPfA~~is~~a~~a~~~~~ipylR~ 98 (256)
T TIGR00715 47 VHTGALDPQELREFLKRHSIDILVDATHPFAAQITTNATAVCKELGIPYVRF 98 (256)
T ss_pred EEECCCCHHHHHHHHHhcCCCEEEEcCCHHHHHHHHHHHHHHHHhCCcEEEE
Confidence 35566676667 78999999999999875 23345677788999999998
No 101
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=60.84 E-value=19 Score=31.62 Aligned_cols=85 Identities=14% Similarity=0.086 Sum_probs=53.5
Q ss_pred eEEcCCCChhcH-HHHHhcCCcEEEEcCCC---CCCCchHhHhhhCCceEEEeeecCCCC-CCCCCCHHHHHHHHHHHHh
Q 028110 64 IFRSGFPDSANF-SFLQTLRLRSIIYLCPE---PYPEANTEFLKSNGIKLFQFAIEGHKE-PFVNIPEDMIREALKVLLD 138 (213)
Q Consensus 64 Lyrs~~p~~~~~-~~L~~lGIktVI~Lr~e---~~~~~~~~~~~~~Gi~~~~ipi~d~~~-p~~~i~~~~i~~al~~i~d 138 (213)
.-.+|....+.+ ++|++.+|+.|||-+.. ..+..-.+.++..||-|+.+-=+.+.. +..-+.-..+.++.+.+..
T Consensus 47 ~~~~G~l~~e~l~~~l~e~~i~llIDATHPyAa~iS~Na~~aake~gipy~r~eRP~~~~~gd~~~~V~d~~ea~~~~~~ 126 (257)
T COG2099 47 VRVGGFLGAEGLAAFLREEGIDLLIDATHPYAARISQNAARAAKETGIPYLRLERPPWAPNGDNWIEVADIEEAAEAAKQ 126 (257)
T ss_pred eeecCcCCHHHHHHHHHHcCCCEEEECCChHHHHHHHHHHHHHHHhCCcEEEEECCccccCCCceEEecCHHHHHHHHhc
Confidence 346777777766 69999999999999874 223345677888999999885444322 1112233456666666542
Q ss_pred cCCCcEEEEcCC
Q 028110 139 VRNHPVLIHCKR 150 (213)
Q Consensus 139 ~~~~PVLVHC~~ 150 (213)
.+...+|=.+
T Consensus 127 --~~~rVflt~G 136 (257)
T COG2099 127 --LGRRVFLTTG 136 (257)
T ss_pred --cCCcEEEecC
Confidence 3344444333
No 102
>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase. The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.
Probab=59.99 E-value=40 Score=30.23 Aligned_cols=25 Identities=28% Similarity=0.367 Sum_probs=16.3
Q ss_pred cEEEEcCCCCChHHHHHHHHHHHCCC
Q 028110 143 PVLIHCKRGKHRTGCLVGCLRKLQKW 168 (213)
Q Consensus 143 PVLVHC~~Gk~RTG~vva~yl~~~gw 168 (213)
.|+|+|..|-.|++.++.. |...|+
T Consensus 76 ~vvvyC~~gG~RS~~aa~~-L~~~G~ 100 (311)
T TIGR03167 76 QPLLYCWRGGMRSGSLAWL-LAQIGF 100 (311)
T ss_pred cEEEEECCCChHHHHHHHH-HHHcCC
Confidence 4999996544588766544 444566
No 103
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=59.00 E-value=53 Score=31.03 Aligned_cols=81 Identities=9% Similarity=0.047 Sum_probs=46.3
Q ss_pred HHHHHhcCCcEEEEcCCC--CCC--C---chHhHhhhCCceEEEeeecCCCCCCCCCCHHHHHHHHHHHHhcCCCcEEEE
Q 028110 75 FSFLQTLRLRSIIYLCPE--PYP--E---ANTEFLKSNGIKLFQFAIEGHKEPFVNIPEDMIREALKVLLDVRNHPVLIH 147 (213)
Q Consensus 75 ~~~L~~lGIktVI~Lr~e--~~~--~---~~~~~~~~~Gi~~~~ipi~d~~~p~~~i~~~~i~~al~~i~d~~~~PVLVH 147 (213)
+...++.|....++++-. +.. + ...+.+.+.|+..+.+. |... -..+.++.+.++.+.+.-+-||-+|
T Consensus 129 v~~ak~~G~~v~~~i~~t~~p~~~~~~~~~~a~~l~~~Gad~I~i~--Dt~G---~l~P~~v~~lv~alk~~~~~pi~~H 203 (448)
T PRK12331 129 VKATKKAGGHAQVAISYTTSPVHTIDYFVKLAKEMQEMGADSICIK--DMAG---ILTPYVAYELVKRIKEAVTVPLEVH 203 (448)
T ss_pred HHHHHHcCCeEEEEEEeecCCCCCHHHHHHHHHHHHHcCCCEEEEc--CCCC---CCCHHHHHHHHHHHHHhcCCeEEEE
Confidence 356667787766655543 211 1 22333456788765543 3211 2346778888888876556899999
Q ss_pred cCCCCChHHHHHHHHH
Q 028110 148 CKRGKHRTGCLVGCLR 163 (213)
Q Consensus 148 C~~Gk~RTG~vva~yl 163 (213)
|+.- .|+.+|-++
T Consensus 204 ~Hnt---~GlA~AN~l 216 (448)
T PRK12331 204 THAT---SGIAEMTYL 216 (448)
T ss_pred ecCC---CCcHHHHHH
Confidence 8753 344444444
No 104
>cd01529 4RHOD_Repeats Member of the Rhodanese Homology Domain superfamily. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. Only the second and most of the fourth repeats contain the putative catalytic Cys residue. This CD aligns the 1st , 2nd, 3rd, and 4th repeats.
Probab=57.43 E-value=16 Score=26.00 Aligned_cols=28 Identities=7% Similarity=-0.099 Sum_probs=19.1
Q ss_pred CCCcEEEEcCCCCChHHHHHHHHHHHCCCC
Q 028110 140 RNHPVLIHCKRGKHRTGCLVGCLRKLQKWC 169 (213)
Q Consensus 140 ~~~PVLVHC~~Gk~RTG~vva~yl~~~gws 169 (213)
.+.+|+|+|..|. |+..+ +.+++..|.+
T Consensus 55 ~~~~ivv~c~~g~-~s~~~-~~~l~~~G~~ 82 (96)
T cd01529 55 RATRYVLTCDGSL-LARFA-AQELLALGGK 82 (96)
T ss_pred CCCCEEEEeCChH-HHHHH-HHHHHHcCCC
Confidence 5789999998774 77554 4444556654
No 105
>cd01525 RHOD_Kc Member of the Rhodanese Homology Domain superfamily. Included in this CD are the rhodanese-like domains found C-terminal of the serine/threonine protein kinases catalytic (S_TKc) domain and the Tre-2, BUB2p, Cdc16p (TBC) domain. The putative active site Cys residue is not present in this CD.
Probab=55.89 E-value=25 Score=25.19 Aligned_cols=28 Identities=7% Similarity=0.001 Sum_probs=19.0
Q ss_pred CCCcEEEEcCCCCChHHHHHHHHHHHCCCC
Q 028110 140 RNHPVLIHCKRGKHRTGCLVGCLRKLQKWC 169 (213)
Q Consensus 140 ~~~PVLVHC~~Gk~RTG~vva~yl~~~gws 169 (213)
.+.+|+++|..|. |++.++. .+...|.+
T Consensus 64 ~~~~vv~~c~~g~-~s~~~a~-~L~~~G~~ 91 (105)
T cd01525 64 KGKIIVIVSHSHK-HAALFAA-FLVKCGVP 91 (105)
T ss_pred cCCeEEEEeCCCc-cHHHHHH-HHHHcCCC
Confidence 3679999999986 7665544 44445553
No 106
>cd01521 RHOD_PspE2 Member of the Rhodanese Homology Domain superfamily. This CD includes the putative rhodanese-like protein, Psp2, of Yersinia pestis biovar Medievalis and other similar uncharacterized proteins.
Probab=55.81 E-value=20 Score=26.29 Aligned_cols=30 Identities=3% Similarity=-0.017 Sum_probs=19.7
Q ss_pred CCCcEEEEcCCCCChHHHHHHHHHHHCCCC
Q 028110 140 RNHPVLIHCKRGKHRTGCLVGCLRKLQKWC 169 (213)
Q Consensus 140 ~~~PVLVHC~~Gk~RTG~vva~yl~~~gws 169 (213)
.+.||+|+|..|....+..++..+...|..
T Consensus 63 ~~~~vvvyc~~g~~~~s~~~a~~l~~~G~~ 92 (110)
T cd01521 63 KEKLFVVYCDGPGCNGATKAALKLAELGFP 92 (110)
T ss_pred CCCeEEEEECCCCCchHHHHHHHHHHcCCe
Confidence 578999999988643444444454555663
No 107
>cd01447 Polysulfide_ST Polysulfide-sulfurtransferase - Rhodanese Homology Domain. This domain is believed to serve as a polysulfide binding and transferase domain in anaerobic gram-negative bacteria, functioning in oxidative phosphorylation with polysulfide-sulfur as a terminal electron acceptor. The active site contains the same conserved cysteine that is the catalytic residue in other Rhodanese Homology Domain proteins.
Probab=55.60 E-value=16 Score=25.93 Aligned_cols=28 Identities=21% Similarity=0.373 Sum_probs=18.6
Q ss_pred CCCcEEEEcCCCCChHHHHHHHHHHHCCCC
Q 028110 140 RNHPVLIHCKRGKHRTGCLVGCLRKLQKWC 169 (213)
Q Consensus 140 ~~~PVLVHC~~Gk~RTG~vva~yl~~~gws 169 (213)
.+.||+|+|..| .|+. .++.++...|.+
T Consensus 60 ~~~~ivv~c~~g-~~s~-~~~~~l~~~G~~ 87 (103)
T cd01447 60 EDKPFVFYCASG-WRSA-LAGKTLQDMGLK 87 (103)
T ss_pred CCCeEEEEcCCC-CcHH-HHHHHHHHcChH
Confidence 578999999887 4753 444454455653
No 108
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=55.52 E-value=33 Score=31.26 Aligned_cols=41 Identities=12% Similarity=0.310 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHhcCCCcEEEEcCCCCChHHHHHHHHHHHCCCC
Q 028110 127 DMIREALKVLLDVRNHPVLIHCKRGKHRTGCLVGCLRKLQKWC 169 (213)
Q Consensus 127 ~~i~~al~~i~d~~~~PVLVHC~~Gk~RTG~vva~yl~~~gws 169 (213)
..+.+.+..+...++.+|+++|..|. |+.. ++.++...|.+
T Consensus 43 ~~l~~~~~~~~~~~~~~IvvyC~~G~-rs~~-aa~~L~~~G~~ 83 (376)
T PRK08762 43 GFLELRIETHLPDRDREIVLICASGT-RSAH-AAATLRELGYT 83 (376)
T ss_pred HHHHHHHhhhcCCCCCeEEEEcCCCc-HHHH-HHHHHHHcCCC
Confidence 34444444333236789999999885 6654 44455555653
No 109
>TIGR00204 dxs 1-deoxy-D-xylulose-5-phosphate synthase. DXP synthase is a thiamine diphosphate-dependent enzyme related to transketolase and the pyruvate dehydrogenase E1-beta subunit. By an acyloin condensation of pyruvate with glyceraldehyde 3-phosphate, it produces 1-deoxy-D-xylulose 5-phosphate, a precursor of thiamine diphosphate (TPP), pyridoxal phosphate, and the isoprenoid building block isopentenyl diphosphate (IPP).
Probab=55.18 E-value=19 Score=35.30 Aligned_cols=44 Identities=23% Similarity=0.369 Sum_probs=32.3
Q ss_pred hhhCCceEEEeeecCCCCCCCCCCHHHHHHHHHHHHhcCCCcEEEEcCCCCCh
Q 028110 102 LKSNGIKLFQFAIEGHKEPFVNIPEDMIREALKVLLDVRNHPVLIHCKRGKHR 154 (213)
Q Consensus 102 ~~~~Gi~~~~ipi~d~~~p~~~i~~~~i~~al~~i~d~~~~PVLVHC~~Gk~R 154 (213)
+++.|+.|+. |+++++ .+.+.++|+.+.+ .++|++|||..=|++
T Consensus 234 f~~~G~~~~~-~vDGhd-------~~~l~~al~~ak~-~~~P~~i~~~T~KGk 277 (617)
T TIGR00204 234 FEELGFNYIG-PVDGHD-------LLELIETLKNAKK-LKGPVFLHIQTKKGK 277 (617)
T ss_pred HHHcCCcEEc-ccCCCC-------HHHHHHHHHHHhc-CCCCEEEEEEecCCC
Confidence 5668888877 887763 4677778887654 467999998876665
No 110
>cd01530 Cdc25 Cdc25 phosphatases are members of the Rhodanese Homology Domain superfamily. They activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. Cdc25A phosphatase functions to regulate S phase entry and Cdc25B is required for G2/M phase transition of the cell cycle. The Cdc25 domain binds oxyanions at the catalytic site and has the signature motif (H/YCxxxxxR).
Probab=54.93 E-value=16 Score=27.62 Aligned_cols=24 Identities=21% Similarity=0.512 Sum_probs=17.4
Q ss_pred CCCcEEEEcC-CCCChHHHHHHHHHH
Q 028110 140 RNHPVLIHCK-RGKHRTGCLVGCLRK 164 (213)
Q Consensus 140 ~~~PVLVHC~-~Gk~RTG~vva~yl~ 164 (213)
++.+|+|||. +| .|+..++..+..
T Consensus 67 ~~~~vv~yC~~sg-~rs~~aa~~L~~ 91 (121)
T cd01530 67 KRRVLIFHCEFSS-KRGPRMARHLRN 91 (121)
T ss_pred CCCEEEEECCCcc-ccHHHHHHHHHH
Confidence 6789999997 66 487766665543
No 111
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=54.62 E-value=1.2e+02 Score=25.37 Aligned_cols=82 Identities=7% Similarity=0.019 Sum_probs=44.3
Q ss_pred eEEcCCCChhc---HHHHHhcCCcEEEEcCCCCCCCchHhHhhhCCceEEEeeecCCCCCCCCCCHHHHHHHHHHHHhcC
Q 028110 64 IFRSGFPDSAN---FSFLQTLRLRSIIYLCPEPYPEANTEFLKSNGIKLFQFAIEGHKEPFVNIPEDMIREALKVLLDVR 140 (213)
Q Consensus 64 Lyrs~~p~~~~---~~~L~~lGIktVI~Lr~e~~~~~~~~~~~~~Gi~~~~ipi~d~~~p~~~i~~~~i~~al~~i~d~~ 140 (213)
+...|.-.... ...|.+.|.+.|+.-+..+......+.++..|.+...++++-. ..+++.++++.+.+.-
T Consensus 13 ~lItGa~~~iG~~ia~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~-------~~~~~~~~~~~~~~~~ 85 (265)
T PRK07097 13 ALITGASYGIGFAIAKAYAKAGATIVFNDINQELVDKGLAAYRELGIEAHGYVCDVT-------DEDGVQAMVSQIEKEV 85 (265)
T ss_pred EEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCC-------CHHHHHHHHHHHHHhC
Confidence 55555444322 3467788998776655432111122223344545444444332 2467887887776532
Q ss_pred C-CcEEEEcCCCC
Q 028110 141 N-HPVLIHCKRGK 152 (213)
Q Consensus 141 ~-~PVLVHC~~Gk 152 (213)
+ --++|||.+..
T Consensus 86 ~~id~li~~ag~~ 98 (265)
T PRK07097 86 GVIDILVNNAGII 98 (265)
T ss_pred CCCCEEEECCCCC
Confidence 2 35999998753
No 112
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=54.20 E-value=72 Score=26.64 Aligned_cols=82 Identities=15% Similarity=0.130 Sum_probs=49.7
Q ss_pred HHHHHhcCCcEEEEcCCCC-CC-C---chHhHhhhCCceEEEeeecCCCCCCCCCCHHHHHHHHHHHHhcC-CCcEEEEc
Q 028110 75 FSFLQTLRLRSIIYLCPEP-YP-E---ANTEFLKSNGIKLFQFAIEGHKEPFVNIPEDMIREALKVLLDVR-NHPVLIHC 148 (213)
Q Consensus 75 ~~~L~~lGIktVI~Lr~e~-~~-~---~~~~~~~~~Gi~~~~ipi~d~~~p~~~i~~~~i~~al~~i~d~~-~~PVLVHC 148 (213)
+.+.+++|++..+++-... .+ + ...+.+.+.|+..+.++=... .+.+..+.+.++.+.+.- +.|+-+||
T Consensus 114 v~~ak~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~l~Dt~G-----~~~P~~v~~lv~~~~~~~~~~~l~~H~ 188 (237)
T PF00682_consen 114 VKYAKELGYEVAFGCEDASRTDPEELLELAEALAEAGADIIYLADTVG-----IMTPEDVAELVRALREALPDIPLGFHA 188 (237)
T ss_dssp HHHHHHTTSEEEEEETTTGGSSHHHHHHHHHHHHHHT-SEEEEEETTS------S-HHHHHHHHHHHHHHSTTSEEEEEE
T ss_pred HHHHHhcCCceEeCccccccccHHHHHHHHHHHHHcCCeEEEeeCccC-----CcCHHHHHHHHHHHHHhccCCeEEEEe
Confidence 3577889999988875532 11 1 233344567998887763322 234678888999888743 38888888
Q ss_pred CCCCChHHHHHHHHHH
Q 028110 149 KRGKHRTGCLVGCLRK 164 (213)
Q Consensus 149 ~~Gk~RTG~vva~yl~ 164 (213)
+.-. |+.+|-.+.
T Consensus 189 Hnd~---Gla~An~la 201 (237)
T PF00682_consen 189 HNDL---GLAVANALA 201 (237)
T ss_dssp BBTT---S-HHHHHHH
T ss_pred cCCc---cchhHHHHH
Confidence 7633 444444443
No 113
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=54.16 E-value=54 Score=28.53 Aligned_cols=71 Identities=10% Similarity=0.038 Sum_probs=43.3
Q ss_pred HHHHhcCCcEEEEcCCC-CC-CC---chHhHhhhCCceEEEeeecCCCCCCCCCCHHHHHHHHHHHHhcCCCcEEEEcCC
Q 028110 76 SFLQTLRLRSIIYLCPE-PY-PE---ANTEFLKSNGIKLFQFAIEGHKEPFVNIPEDMIREALKVLLDVRNHPVLIHCKR 150 (213)
Q Consensus 76 ~~L~~lGIktVI~Lr~e-~~-~~---~~~~~~~~~Gi~~~~ipi~d~~~p~~~i~~~~i~~al~~i~d~~~~PVLVHC~~ 150 (213)
...++.|++..+++-.- .. ++ ...+.+.+.|...+.++ |... -..++++.+.++.+.+.-+-|+-+||+.
T Consensus 119 ~~a~~~G~~v~~~~eda~r~~~~~l~~~~~~~~~~g~~~i~l~--Dt~G---~~~P~~v~~~~~~~~~~~~~~i~~H~Hn 193 (262)
T cd07948 119 EFVKSKGIEVRFSSEDSFRSDLVDLLRVYRAVDKLGVNRVGIA--DTVG---IATPRQVYELVRTLRGVVSCDIEFHGHN 193 (262)
T ss_pred HHHHHCCCeEEEEEEeeCCCCHHHHHHHHHHHHHcCCCEEEEC--CcCC---CCCHHHHHHHHHHHHHhcCCeEEEEECC
Confidence 45568899988887321 11 11 22333456788765543 4211 2346788888888876545788888875
Q ss_pred C
Q 028110 151 G 151 (213)
Q Consensus 151 G 151 (213)
-
T Consensus 194 ~ 194 (262)
T cd07948 194 D 194 (262)
T ss_pred C
Confidence 3
No 114
>PRK09629 bifunctional thiosulfate sulfurtransferase/phosphatidylserine decarboxylase; Provisional
Probab=53.86 E-value=28 Score=34.22 Aligned_cols=43 Identities=21% Similarity=0.258 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHhcCCCcEEEEcCCCCChHHHHHHHHHHHCCCCH
Q 028110 126 EDMIREALKVLLDVRNHPVLIHCKRGKHRTGCLVGCLRKLQKWCL 170 (213)
Q Consensus 126 ~~~i~~al~~i~d~~~~PVLVHC~~Gk~RTG~vva~yl~~~gws~ 170 (213)
.+.+.+.++.+--..+.+|++||..|. |++. ++..+...|+..
T Consensus 208 ~~el~~~~~~~Gi~~~~~VVvYC~sG~-rAa~-~~~~L~~lG~~~ 250 (610)
T PRK09629 208 RQDMPEILRDLGITPDKEVITHCQTHH-RSGF-TYLVAKALGYPR 250 (610)
T ss_pred HHHHHHHHHHcCCCCCCCEEEECCCCh-HHHH-HHHHHHHcCCCC
Confidence 455666665432135789999999985 6554 444555667753
No 115
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=52.07 E-value=98 Score=27.95 Aligned_cols=74 Identities=16% Similarity=0.269 Sum_probs=44.7
Q ss_pred cHHHHHhcCCcEEEEcCCCC-C-CC---chHhHhhhCCceEEEeeecCCCCCCCCCCHHHHHHHHHHHHhcC--CCcEEE
Q 028110 74 NFSFLQTLRLRSIIYLCPEP-Y-PE---ANTEFLKSNGIKLFQFAIEGHKEPFVNIPEDMIREALKVLLDVR--NHPVLI 146 (213)
Q Consensus 74 ~~~~L~~lGIktVI~Lr~e~-~-~~---~~~~~~~~~Gi~~~~ipi~d~~~p~~~i~~~~i~~al~~i~d~~--~~PVLV 146 (213)
.++..+++|....+++.-.. . ++ ...+.+.+.|...+.+ .|... .+.++++.+.+..+.+.- +-||-+
T Consensus 119 ~i~~ak~~G~~v~~~l~~s~~~~~e~l~~~a~~~~~~Ga~~i~i--~DT~G---~~~P~~v~~~v~~l~~~l~~~i~ig~ 193 (333)
T TIGR03217 119 HIGMARELGMDTVGFLMMSHMTPPEKLAEQAKLMESYGADCVYI--VDSAG---AMLPDDVRDRVRALKAVLKPETQVGF 193 (333)
T ss_pred HHHHHHHcCCeEEEEEEcccCCCHHHHHHHHHHHHhcCCCEEEE--ccCCC---CCCHHHHHHHHHHHHHhCCCCceEEE
Confidence 34677788888888774331 1 11 1223345577776544 33211 245678888888887642 368999
Q ss_pred EcCCCC
Q 028110 147 HCKRGK 152 (213)
Q Consensus 147 HC~~Gk 152 (213)
||+...
T Consensus 194 H~Hnnl 199 (333)
T TIGR03217 194 HAHHNL 199 (333)
T ss_pred EeCCCC
Confidence 998754
No 116
>PHA02588 cd deoxycytidylate deaminase; Provisional
Probab=51.92 E-value=43 Score=27.28 Aligned_cols=50 Identities=12% Similarity=0.246 Sum_probs=37.2
Q ss_pred eEEcCCCChhcHHHHHhcCCcEEEEcCCCCCCC-chHhHhhhCCceEEEee
Q 028110 64 IFRSGFPDSANFSFLQTLRLRSIIYLCPEPYPE-ANTEFLKSNGIKLFQFA 113 (213)
Q Consensus 64 Lyrs~~p~~~~~~~L~~lGIktVI~Lr~e~~~~-~~~~~~~~~Gi~~~~ip 113 (213)
||.+-.|-+.=...|...||+.||......... .-.+++++.||++.+++
T Consensus 104 LYvTlePC~~Ca~aI~~~gI~rVvy~~~~~~~~~~~~~~L~~~Gi~v~~~~ 154 (168)
T PHA02588 104 MYVTASPCPDCAKAIAQSGIKKLVYCEKYDRNGPGWDDILRKSGIEVIQIP 154 (168)
T ss_pred EEEeCCCcHHHHHHHHHhCCCEEEEeeccCCCcHHHHHHHHHCCCEEEEeC
Confidence 899988887666788889999999876532211 23467889999998874
No 117
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=51.76 E-value=57 Score=32.02 Aligned_cols=82 Identities=15% Similarity=0.185 Sum_probs=48.0
Q ss_pred HHHHHhcCCcEEEEcC--CCCCC--C---chHhHhhhCCceEEEeeecCCCCCCCCCCHHHHHHHHHHHHhcCCCcEEEE
Q 028110 75 FSFLQTLRLRSIIYLC--PEPYP--E---ANTEFLKSNGIKLFQFAIEGHKEPFVNIPEDMIREALKVLLDVRNHPVLIH 147 (213)
Q Consensus 75 ~~~L~~lGIktVI~Lr--~e~~~--~---~~~~~~~~~Gi~~~~ipi~d~~~p~~~i~~~~i~~al~~i~d~~~~PVLVH 147 (213)
+...+++|.....+++ ..+.. + ...+.+.+.|...+.| .|... -+.+..+.+.++.+.+.-+-||-+|
T Consensus 130 i~~ak~~G~~~~~~i~yt~~p~~~~~~~~~~a~~l~~~Gad~i~i--~Dt~G---~l~P~~~~~lv~~lk~~~~~pi~~H 204 (593)
T PRK14040 130 LKAVRKVGAHAQGTLSYTTSPVHTLQTWVDLAKQLEDMGVDSLCI--KDMAG---LLKPYAAYELVSRIKKRVDVPLHLH 204 (593)
T ss_pred HHHHHHcCCeEEEEEEEeeCCccCHHHHHHHHHHHHHcCCCEEEE--CCCCC---CcCHHHHHHHHHHHHHhcCCeEEEE
Confidence 4566777876543333 22211 1 2233345678876654 33211 2346778888888876556899999
Q ss_pred cCCCCChHHHHHHHHHH
Q 028110 148 CKRGKHRTGCLVGCLRK 164 (213)
Q Consensus 148 C~~Gk~RTG~vva~yl~ 164 (213)
|+. .+|+.+|-++.
T Consensus 205 ~Hn---t~GlA~An~la 218 (593)
T PRK14040 205 CHA---TTGLSTATLLK 218 (593)
T ss_pred ECC---CCchHHHHHHH
Confidence 976 55666666664
No 118
>PLN02234 1-deoxy-D-xylulose-5-phosphate synthase
Probab=51.62 E-value=30 Score=34.28 Aligned_cols=48 Identities=27% Similarity=0.450 Sum_probs=32.9
Q ss_pred HhHhhhCCceEEEeeecCCCCCCCCCCHHHHHHHHHHHHhcC-CCcEEEEcCCCCCh
Q 028110 99 TEFLKSNGIKLFQFAIEGHKEPFVNIPEDMIREALKVLLDVR-NHPVLIHCKRGKHR 154 (213)
Q Consensus 99 ~~~~~~~Gi~~~~ipi~d~~~p~~~i~~~~i~~al~~i~d~~-~~PVLVHC~~Gk~R 154 (213)
.+.+++.|..|+. |+++++ .+.+.++|+.+.+.. ++|++|||..-|++
T Consensus 276 ~~~fe~fG~~~~g-~vDGHd-------~~~l~~al~~~k~~~~~~P~vI~~~T~KGk 324 (641)
T PLN02234 276 STLFEELGFHYVG-PVDGHN-------IDDLVSILETLKSTKTIGPVLIHVVTEKGR 324 (641)
T ss_pred HHHHHHcCCEEEe-eECCCC-------HHHHHHHHHHHHhcCCCCCEEEEEEEecCC
Confidence 3456667776552 667762 467888888776543 58999999876665
No 119
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=51.26 E-value=59 Score=28.42 Aligned_cols=72 Identities=17% Similarity=0.163 Sum_probs=45.1
Q ss_pred HHHHHhcCCcEEEEcCCC-------CCC-C---chHhHhhhCCceEEEeeecCCCCCCCCCCHHHHHHHHHHHHhcC-CC
Q 028110 75 FSFLQTLRLRSIIYLCPE-------PYP-E---ANTEFLKSNGIKLFQFAIEGHKEPFVNIPEDMIREALKVLLDVR-NH 142 (213)
Q Consensus 75 ~~~L~~lGIktVI~Lr~e-------~~~-~---~~~~~~~~~Gi~~~~ipi~d~~~p~~~i~~~~i~~al~~i~d~~-~~ 142 (213)
+...++.|++..+++.-. ..+ + ...+.+.+.|+..+.++=... ...+.++.+.++.+.+.- +-
T Consensus 120 v~~ak~~G~~v~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~Ga~~i~l~DT~G-----~~~P~~v~~lv~~l~~~~~~~ 194 (274)
T cd07938 120 AELAKAAGLRVRGYVSTAFGCPYEGEVPPERVAEVAERLLDLGCDEISLGDTIG-----VATPAQVRRLLEAVLERFPDE 194 (274)
T ss_pred HHHHHHCCCeEEEEEEeEecCCCCCCCCHHHHHHHHHHHHHcCCCEEEECCCCC-----ccCHHHHHHHHHHHHHHCCCC
Confidence 457788899988877521 111 1 123334568888776653221 134678888888887643 47
Q ss_pred cEEEEcCCC
Q 028110 143 PVLIHCKRG 151 (213)
Q Consensus 143 PVLVHC~~G 151 (213)
|+-+||+.-
T Consensus 195 ~i~~H~Hnd 203 (274)
T cd07938 195 KLALHFHDT 203 (274)
T ss_pred eEEEEECCC
Confidence 899999764
No 120
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=50.95 E-value=97 Score=29.59 Aligned_cols=82 Identities=10% Similarity=0.103 Sum_probs=49.3
Q ss_pred HHHHHhcCCcEEEEcCCC--CCC-----CchHhHhhhCCceEEEeeecCCCCCCCCCCHHHHHHHHHHHHhcCCCcEEEE
Q 028110 75 FSFLQTLRLRSIIYLCPE--PYP-----EANTEFLKSNGIKLFQFAIEGHKEPFVNIPEDMIREALKVLLDVRNHPVLIH 147 (213)
Q Consensus 75 ~~~L~~lGIktVI~Lr~e--~~~-----~~~~~~~~~~Gi~~~~ipi~d~~~p~~~i~~~~i~~al~~i~d~~~~PVLVH 147 (213)
++..++.|....++++-. +.. ....+.+.+.|+..+.| .|... -+.+..+.+.++.+.+..+-||-+|
T Consensus 138 i~~ak~~G~~~~~~i~yt~sp~~t~~y~~~~a~~l~~~Gad~I~I--kDtaG---~l~P~~v~~Lv~alk~~~~~pi~~H 212 (468)
T PRK12581 138 LRAVKKTGKEAQLCIAYTTSPVHTLNYYLSLVKELVEMGADSICI--KDMAG---ILTPKAAKELVSGIKAMTNLPLIVH 212 (468)
T ss_pred HHHHHHcCCEEEEEEEEEeCCcCcHHHHHHHHHHHHHcCCCEEEE--CCCCC---CcCHHHHHHHHHHHHhccCCeEEEE
Confidence 456777887766666542 211 12233345678876554 34211 2346778888888876556899999
Q ss_pred cCCCCChHHHHHHHHHH
Q 028110 148 CKRGKHRTGCLVGCLRK 164 (213)
Q Consensus 148 C~~Gk~RTG~vva~yl~ 164 (213)
|+. ..|+.+|-++.
T Consensus 213 ~Hn---t~GlA~An~la 226 (468)
T PRK12581 213 THA---TSGISQMTYLA 226 (468)
T ss_pred eCC---CCccHHHHHHH
Confidence 976 45555555553
No 121
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=50.49 E-value=1e+02 Score=27.89 Aligned_cols=74 Identities=14% Similarity=0.249 Sum_probs=46.0
Q ss_pred cHHHHHhcCCcEEEEcCCCCC-C-C---chHhHhhhCCceEEEeeecCCCCCCCCCCHHHHHHHHHHHHhcC--CCcEEE
Q 028110 74 NFSFLQTLRLRSIIYLCPEPY-P-E---ANTEFLKSNGIKLFQFAIEGHKEPFVNIPEDMIREALKVLLDVR--NHPVLI 146 (213)
Q Consensus 74 ~~~~L~~lGIktVI~Lr~e~~-~-~---~~~~~~~~~Gi~~~~ipi~d~~~p~~~i~~~~i~~al~~i~d~~--~~PVLV 146 (213)
.+...+++|.+..+++.-... + + ...+.+.+.|.+.+.+ .|... .+.++++.+.++.+.+.- +-||-+
T Consensus 120 ~i~~ak~~G~~v~~~l~~a~~~~~e~l~~~a~~~~~~Ga~~i~i--~DT~G---~~~P~~v~~~v~~l~~~l~~~i~ig~ 194 (337)
T PRK08195 120 HIGLARELGMDTVGFLMMSHMAPPEKLAEQAKLMESYGAQCVYV--VDSAG---ALLPEDVRDRVRALRAALKPDTQVGF 194 (337)
T ss_pred HHHHHHHCCCeEEEEEEeccCCCHHHHHHHHHHHHhCCCCEEEe--CCCCC---CCCHHHHHHHHHHHHHhcCCCCeEEE
Confidence 346777888888888754321 1 1 2233345678876544 33211 245778888888887642 578999
Q ss_pred EcCCCC
Q 028110 147 HCKRGK 152 (213)
Q Consensus 147 HC~~Gk 152 (213)
||+...
T Consensus 195 H~Hnnl 200 (337)
T PRK08195 195 HGHNNL 200 (337)
T ss_pred EeCCCc
Confidence 998644
No 122
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=50.45 E-value=1.7e+02 Score=26.82 Aligned_cols=72 Identities=13% Similarity=0.143 Sum_probs=45.0
Q ss_pred HHHHhcCCcEEEEcCCCC-CC-C---chHhHhhhCCceEEEeeecCCCCCCCCCCHHHHHHHHHHHHhcCCCcEEEEcCC
Q 028110 76 SFLQTLRLRSIIYLCPEP-YP-E---ANTEFLKSNGIKLFQFAIEGHKEPFVNIPEDMIREALKVLLDVRNHPVLIHCKR 150 (213)
Q Consensus 76 ~~L~~lGIktVI~Lr~e~-~~-~---~~~~~~~~~Gi~~~~ipi~d~~~p~~~i~~~~i~~al~~i~d~~~~PVLVHC~~ 150 (213)
+..++.|+...++.-... .+ + ...+.+.+.|+..+.++=... .+.+.++.+.++.+.+.-+-|+-+||+.
T Consensus 123 ~~a~~~G~~v~~~~ed~~r~~~~~l~~~~~~~~~~Ga~~I~l~DT~G-----~~~P~~v~~lv~~l~~~~~~~l~~H~Hn 197 (378)
T PRK11858 123 EYAKDHGLYVSFSAEDASRTDLDFLIEFAKAAEEAGADRVRFCDTVG-----ILDPFTMYELVKELVEAVDIPIEVHCHN 197 (378)
T ss_pred HHHHHCCCeEEEEeccCCCCCHHHHHHHHHHHHhCCCCEEEEeccCC-----CCCHHHHHHHHHHHHHhcCCeEEEEecC
Confidence 467788998777642211 11 1 223334568998877663221 2346788888888876446799999986
Q ss_pred CC
Q 028110 151 GK 152 (213)
Q Consensus 151 Gk 152 (213)
-.
T Consensus 198 d~ 199 (378)
T PRK11858 198 DF 199 (378)
T ss_pred Cc
Confidence 43
No 123
>COG2089 SpsE Sialic acid synthase [Cell envelope biogenesis, outer membrane]
Probab=48.63 E-value=1.5e+02 Score=27.19 Aligned_cols=26 Identities=31% Similarity=0.636 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHhcCCCc--EEEEcCCCC
Q 028110 126 EDMIREALKVLLDVRNHP--VLIHCKRGK 152 (213)
Q Consensus 126 ~~~i~~al~~i~d~~~~P--VLVHC~~Gk 152 (213)
.+.+.++++.+.+ .+.| +|+||.++.
T Consensus 159 ~~ei~~av~~~r~-~g~~~i~LLhC~s~Y 186 (347)
T COG2089 159 IEEIEEAVAILRE-NGNPDIALLHCTSAY 186 (347)
T ss_pred HHHHHHHHHHHHh-cCCCCeEEEEecCCC
Confidence 4678889998887 4445 999999875
No 124
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=48.20 E-value=1.5e+02 Score=29.27 Aligned_cols=82 Identities=13% Similarity=0.178 Sum_probs=49.3
Q ss_pred cHHHHHhcCCcEEEEcC--CCCCC--C---chHhHhhhCCceEEEeeecCCCCCCCCCCHHHHHHHHHHHHhcCCCcEEE
Q 028110 74 NFSFLQTLRLRSIIYLC--PEPYP--E---ANTEFLKSNGIKLFQFAIEGHKEPFVNIPEDMIREALKVLLDVRNHPVLI 146 (213)
Q Consensus 74 ~~~~L~~lGIktVI~Lr--~e~~~--~---~~~~~~~~~Gi~~~~ipi~d~~~p~~~i~~~~i~~al~~i~d~~~~PVLV 146 (213)
.+...++.|.....++| ..+.. + ...+.+.+.|+..+.| .|... -+.+.++.+.++.|.+.-+-||-+
T Consensus 128 ~i~~~k~~G~~~~~~i~yt~sp~~t~e~~~~~ak~l~~~Gad~I~I--kDtaG---~l~P~~v~~lv~alk~~~~ipi~~ 202 (596)
T PRK14042 128 AIDAIKSHKKHAQGAICYTTSPVHTLDNFLELGKKLAEMGCDSIAI--KDMAG---LLTPTVTVELYAGLKQATGLPVHL 202 (596)
T ss_pred HHHHHHHcCCEEEEEEEecCCCCCCHHHHHHHHHHHHHcCCCEEEe--CCccc---CCCHHHHHHHHHHHHhhcCCEEEE
Confidence 34677788887776644 33221 1 2233345688876544 44311 234677888888887655689999
Q ss_pred EcCCCCChHHHHHHHHH
Q 028110 147 HCKRGKHRTGCLVGCLR 163 (213)
Q Consensus 147 HC~~Gk~RTG~vva~yl 163 (213)
||+. ..|+-++.++
T Consensus 203 H~Hn---t~Gla~an~l 216 (596)
T PRK14042 203 HSHS---TSGLASICHY 216 (596)
T ss_pred EeCC---CCCcHHHHHH
Confidence 9976 4455555555
No 125
>cd07037 TPP_PYR_MenD Pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate synthase (MenD) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate (SEPHCHC) synthase (MenD) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dim
Probab=47.69 E-value=1.4e+02 Score=23.89 Aligned_cols=38 Identities=11% Similarity=0.020 Sum_probs=25.0
Q ss_pred HHHHHhcCCcEEEEcCCCCCCCchHhHh-hhCCceEEEee
Q 028110 75 FSFLQTLRLRSIIYLCPEPYPEANTEFL-KSNGIKLFQFA 113 (213)
Q Consensus 75 ~~~L~~lGIktVI~Lr~e~~~~~~~~~~-~~~Gi~~~~ip 113 (213)
...|+++||++|+-+-..... .+.+.+ +..||+++...
T Consensus 4 ~~~L~~~Gv~~vFg~pG~~~~-~l~~al~~~~~i~~v~~r 42 (162)
T cd07037 4 VEELKRLGVRDVVISPGSRSA-PLALAAAEHPEFRLHVRV 42 (162)
T ss_pred HHHHHHCCCCEEEECCCcchH-HHHHHHHhCCCceEEecc
Confidence 468899999999988876432 222233 33588877643
No 126
>PF08659 KR: KR domain; InterPro: IPR013968 This domain is found in bacterial polyketide synthases that catalyse the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. ; PDB: 3QP9_D 2FR0_A 2FR1_A 2Z5L_A 3SLK_B 3MJE_B 3MJC_A 3MJT_B 3MJV_A 3MJS_B ....
Probab=47.20 E-value=67 Score=25.73 Aligned_cols=68 Identities=24% Similarity=0.267 Sum_probs=38.9
Q ss_pred HHHHHhcCCcEEEEcCCC-CCC-C--chHhHhhhCCceEEEeeecCCCCCCCCCCHHHHHHHHHHHHhcCCCcE--EEEc
Q 028110 75 FSFLQTLRLRSIIYLCPE-PYP-E--ANTEFLKSNGIKLFQFAIEGHKEPFVNIPEDMIREALKVLLDVRNHPV--LIHC 148 (213)
Q Consensus 75 ~~~L~~lGIktVI~Lr~e-~~~-~--~~~~~~~~~Gi~~~~ipi~d~~~p~~~i~~~~i~~al~~i~d~~~~PV--LVHC 148 (213)
..+|.+.|-++||-+... ... . ...+.++..|.+...+.++-. ..+++.++++.+.. ..+|| +|||
T Consensus 17 a~~La~~~~~~~il~~r~~~~~~~~~~~i~~l~~~g~~v~~~~~Dv~-------d~~~v~~~~~~~~~-~~~~i~gVih~ 88 (181)
T PF08659_consen 17 ARWLAERGARRLILLGRSGAPSAEAEAAIRELESAGARVEYVQCDVT-------DPEAVAAALAQLRQ-RFGPIDGVIHA 88 (181)
T ss_dssp HHHHHHTT-SEEEEEESSGGGSTTHHHHHHHHHHTT-EEEEEE--TT-------SHHHHHHHHHTSHT-TSS-EEEEEE-
T ss_pred HHHHHHcCCCEEEEeccCCCccHHHHHHHHHHHhCCCceeeeccCcc-------CHHHHHHHHHHHHh-ccCCcceeeee
Confidence 367888888888877554 211 1 223345667888887776653 25688888887764 34676 9999
Q ss_pred CC
Q 028110 149 KR 150 (213)
Q Consensus 149 ~~ 150 (213)
..
T Consensus 89 ag 90 (181)
T PF08659_consen 89 AG 90 (181)
T ss_dssp --
T ss_pred ee
Confidence 54
No 127
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=46.86 E-value=70 Score=27.68 Aligned_cols=84 Identities=19% Similarity=0.310 Sum_probs=42.6
Q ss_pred eEEcCCCChhcHH----HHHhcCCcEEEEcCCCCCCCchHhHhhhCCceEEEeeecCCCC------------CC----CC
Q 028110 64 IFRSGFPDSANFS----FLQTLRLRSIIYLCPEPYPEANTEFLKSNGIKLFQFAIEGHKE------------PF----VN 123 (213)
Q Consensus 64 Lyrs~~p~~~~~~----~L~~lGIktVI~Lr~e~~~~~~~~~~~~~Gi~~~~ipi~d~~~------------p~----~~ 123 (213)
+|+.-....+.+. ..+++||.-+.+--.. .-.+++.+.|+..+.++-.+-.. |. --
T Consensus 47 ~~~~~el~~e~~~~L~~~~~~~gi~f~stpfd~----~s~d~l~~~~~~~~KIaS~dl~n~~lL~~~A~tgkPvIlSTG~ 122 (241)
T PF03102_consen 47 LFKKLELSEEQHKELFEYCKELGIDFFSTPFDE----ESVDFLEELGVPAYKIASGDLTNLPLLEYIAKTGKPVILSTGM 122 (241)
T ss_dssp HHHHHSS-HHHHHHHHHHHHHTT-EEEEEE-SH----HHHHHHHHHT-SEEEE-GGGTT-HHHHHHHHTT-S-EEEE-TT
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCEEEECCCCH----HHHHHHHHcCCCEEEeccccccCHHHHHHHHHhCCcEEEECCC
Confidence 3344444444443 3346677666554332 34556667777777776543221 10 01
Q ss_pred CCHHHHHHHHHHHHhc-CCCcEEEEcCCC
Q 028110 124 IPEDMIREALKVLLDV-RNHPVLIHCKRG 151 (213)
Q Consensus 124 i~~~~i~~al~~i~d~-~~~PVLVHC~~G 151 (213)
-+.+.|.++++.+.+. ...-+|.||.++
T Consensus 123 stl~EI~~Av~~~~~~~~~~l~llHC~s~ 151 (241)
T PF03102_consen 123 STLEEIERAVEVLREAGNEDLVLLHCVSS 151 (241)
T ss_dssp --HHHHHHHHHHHHHHCT--EEEEEE-SS
T ss_pred CCHHHHHHHHHHHHhcCCCCEEEEecCCC
Confidence 1357899999999553 345599999987
No 128
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=46.73 E-value=2e+02 Score=26.06 Aligned_cols=73 Identities=16% Similarity=0.097 Sum_probs=44.0
Q ss_pred HHHHHhcCCcEEEEcCCCCCC--Cc---hHhHhhhCCceEEEeeecCCCCCCCCCCHHHHHHHHHHHHhcCCCcEEEEcC
Q 028110 75 FSFLQTLRLRSIIYLCPEPYP--EA---NTEFLKSNGIKLFQFAIEGHKEPFVNIPEDMIREALKVLLDVRNHPVLIHCK 149 (213)
Q Consensus 75 ~~~L~~lGIktVI~Lr~e~~~--~~---~~~~~~~~Gi~~~~ipi~d~~~p~~~i~~~~i~~al~~i~d~~~~PVLVHC~ 149 (213)
++..++.|++..+++-..... +. ..+.+.+.|.+.+.++=... ...+..+.+.++.+.+.-+-|+-+||+
T Consensus 119 i~~ak~~g~~v~~~~ed~~r~~~~~l~~~~~~~~~~Ga~~i~l~DT~G-----~~~P~~v~~lv~~l~~~~~v~l~~H~H 193 (365)
T TIGR02660 119 VSFARDRGLFVSVGGEDASRADPDFLVELAEVAAEAGADRFRFADTVG-----ILDPFSTYELVRALRQAVDLPLEMHAH 193 (365)
T ss_pred HHHHHhCCCEEEEeecCCCCCCHHHHHHHHHHHHHcCcCEEEEcccCC-----CCCHHHHHHHHHHHHHhcCCeEEEEec
Confidence 356677898866654322111 11 22334568988876653221 234678888888887644578999998
Q ss_pred CCC
Q 028110 150 RGK 152 (213)
Q Consensus 150 ~Gk 152 (213)
.-.
T Consensus 194 Nd~ 196 (365)
T TIGR02660 194 NDL 196 (365)
T ss_pred CCC
Confidence 643
No 129
>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional
Probab=46.15 E-value=83 Score=25.77 Aligned_cols=70 Identities=11% Similarity=0.029 Sum_probs=38.3
Q ss_pred HHHHHhcCCcEEEE-cCCCCCCCchHhHhhhCCceEEEeeecCCCCCCCCCCHHHHHHHHHHHHhcCC-CcEEEEcCCC
Q 028110 75 FSFLQTLRLRSIIY-LCPEPYPEANTEFLKSNGIKLFQFAIEGHKEPFVNIPEDMIREALKVLLDVRN-HPVLIHCKRG 151 (213)
Q Consensus 75 ~~~L~~lGIktVI~-Lr~e~~~~~~~~~~~~~Gi~~~~ipi~d~~~p~~~i~~~~i~~al~~i~d~~~-~PVLVHC~~G 151 (213)
...|.+.|.+.|+. .|..+..+...+.++..|-++..+..+-. ..+.+.++++.+.+.-+ --++|||.+.
T Consensus 21 a~~l~~~g~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~-------~~~~~~~~~~~~~~~~~~id~vi~~ag~ 92 (250)
T PRK08063 21 ALRLAEEGYDIAVNYARSRKAAEETAEEIEALGRKALAVKANVG-------DVEKIKEMFAQIDEEFGRLDVFVNNAAS 92 (250)
T ss_pred HHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCeEEEEEcCCC-------CHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 35777889887664 34432111222233444545555554332 24677778877765322 3499999764
No 130
>cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. Lactobacillus plantarum POX is a homotetramer (dimer-of-homodimers), having two active sites per homodimer lying between PYR and PP domains of differ
Probab=46.07 E-value=1.5e+02 Score=23.58 Aligned_cols=38 Identities=11% Similarity=0.163 Sum_probs=25.6
Q ss_pred HHHHHhcCCcEEEEcCCCCCCCchHhHhhh-CCceEEEee
Q 028110 75 FSFLQTLRLRSIIYLCPEPYPEANTEFLKS-NGIKLFQFA 113 (213)
Q Consensus 75 ~~~L~~lGIktVI~Lr~e~~~~~~~~~~~~-~Gi~~~~ip 113 (213)
...|+++||++|+-+-..... .+-+.+.+ .||+++...
T Consensus 7 ~~~L~~~Gv~~vFgipG~~~~-~l~~al~~~~~i~~v~~r 45 (164)
T cd07039 7 VETLENWGVKRVYGIPGDSIN-GLMDALRREGKIEFIQVR 45 (164)
T ss_pred HHHHHHCCCCEEEEcCCCchH-HHHHHHhhcCCCeEEEeC
Confidence 468899999999999886432 22333333 688887543
No 131
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=45.81 E-value=66 Score=28.36 Aligned_cols=72 Identities=15% Similarity=0.017 Sum_probs=42.8
Q ss_pred HHHHhcCCcEEEEcCC-----CC--C-CC---chHhHhhhCCceEEEeeecCCCCCCCCCCHHHHHHHHHHHHhcC-CCc
Q 028110 76 SFLQTLRLRSIIYLCP-----EP--Y-PE---ANTEFLKSNGIKLFQFAIEGHKEPFVNIPEDMIREALKVLLDVR-NHP 143 (213)
Q Consensus 76 ~~L~~lGIktVI~Lr~-----e~--~-~~---~~~~~~~~~Gi~~~~ipi~d~~~p~~~i~~~~i~~al~~i~d~~-~~P 143 (213)
+..++.|++...++.- .. . ++ ...+.+.+.|++.+.++=... ...+.++.+.++.+.+.- +-|
T Consensus 127 ~~ak~~g~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~G~d~i~l~DT~G-----~~~P~~v~~lv~~l~~~~~~~~ 201 (287)
T PRK05692 127 EAAKQAGVRVRGYVSCVLGCPYEGEVPPEAVADVAERLFALGCYEISLGDTIG-----VGTPGQVRAVLEAVLAEFPAER 201 (287)
T ss_pred HHHHHcCCEEEEEEEEEecCCCCCCCCHHHHHHHHHHHHHcCCcEEEeccccC-----ccCHHHHHHHHHHHHHhCCCCe
Confidence 4667889887765542 11 0 11 223334568998776653221 124678888888887643 358
Q ss_pred EEEEcCCCC
Q 028110 144 VLIHCKRGK 152 (213)
Q Consensus 144 VLVHC~~Gk 152 (213)
+-+||+.-.
T Consensus 202 i~~H~Hn~~ 210 (287)
T PRK05692 202 LAGHFHDTY 210 (287)
T ss_pred EEEEecCCC
Confidence 888887643
No 132
>TIGR02764 spore_ybaN_pdaB polysaccharide deacetylase family sporulation protein PdaB. This model describes the YbaN protein family, also called PdaB and SpoVIE, of Gram-positive bacteria. Although ybaN null mutants have only a mild sporulation defect, ybaN/ytrI double mutants show drastically reducted sporulation efficiencies. This synthetic defect suggests the role of this sigmaE-controlled gene in sporulation had been masked by functional redundancy. Members of this family are homologous to a characterized polysaccharide deacetylase; the exact function this protein family is unknown.
Probab=45.18 E-value=1.4e+02 Score=23.99 Aligned_cols=79 Identities=13% Similarity=0.182 Sum_probs=40.4
Q ss_pred HHHHhc-CCcEEEEcCCC--CCCCchHhHhhhCCceEEEeeecCCCCCCCCCCHHHHH-HHHHHHHhcCCCcEEEEcCCC
Q 028110 76 SFLQTL-RLRSIIYLCPE--PYPEANTEFLKSNGIKLFQFAIEGHKEPFVNIPEDMIR-EALKVLLDVRNHPVLIHCKRG 151 (213)
Q Consensus 76 ~~L~~l-GIktVI~Lr~e--~~~~~~~~~~~~~Gi~~~~ipi~d~~~p~~~i~~~~i~-~al~~i~d~~~~PVLVHC~~G 151 (213)
+.|++. |.+ +--+|+. .+.....+++++.|++++.-.+...+. ...+.+.+. .+++.+ ..+.-||+|+..
T Consensus 88 ~~l~~~~g~~-~~~fr~P~G~~~~~~~~~l~~~G~~~v~w~~~~~D~--~~~~~~~i~~~~~~~~--~~g~Iil~Hd~~- 161 (191)
T TIGR02764 88 EIIEKLTGKK-PTLFRPPSGAFNKAVLKAAESLGYTVVHWSVDSRDW--KNPGVESIVDRVVKNT--KPGDIILLHASD- 161 (191)
T ss_pred HHHHHHhCCC-CCEEECCCcCCCHHHHHHHHHcCCeEEEecCCCCcc--CCCCHHHHHHHHHhcC--CCCCEEEEeCCC-
Confidence 355554 544 3345553 233455677888999988766654321 112333332 222222 134469999944
Q ss_pred CChHHHHHHH
Q 028110 152 KHRTGCLVGC 161 (213)
Q Consensus 152 k~RTG~vva~ 161 (213)
++..++-++
T Consensus 162 -~~~~t~~~l 170 (191)
T TIGR02764 162 -SAKQTVKAL 170 (191)
T ss_pred -CcHhHHHHH
Confidence 454444433
No 133
>PRK12315 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=45.12 E-value=67 Score=31.26 Aligned_cols=46 Identities=24% Similarity=0.433 Sum_probs=32.1
Q ss_pred hHhhhCCceEEEeeecCCCCCCCCCCHHHHHHHHHHHHhcCCCcEEEEcCCCCCh
Q 028110 100 EFLKSNGIKLFQFAIEGHKEPFVNIPEDMIREALKVLLDVRNHPVLIHCKRGKHR 154 (213)
Q Consensus 100 ~~~~~~Gi~~~~ipi~d~~~p~~~i~~~~i~~al~~i~d~~~~PVLVHC~~Gk~R 154 (213)
..++..|+.++. ++++++ .+.+.++++...+ .++|++|||..=+++
T Consensus 201 ~~~~a~G~~~~~-v~DG~D-------~~~l~~a~~~a~~-~~gP~~i~~~T~kG~ 246 (581)
T PRK12315 201 NLFKAMGLDYRY-VEDGND-------IESLIEAFKEVKD-IDHPIVLHIHTLKGK 246 (581)
T ss_pred HHHHhcCCeEEE-eeCCCC-------HHHHHHHHHHHHh-CCCCEEEEEEeecCC
Confidence 456778988886 446652 4567778777654 578999998776654
No 134
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=45.05 E-value=1.2e+02 Score=26.44 Aligned_cols=73 Identities=12% Similarity=0.036 Sum_probs=44.2
Q ss_pred HHHHHhcCCcEEEEcCC---CCCC-C---chHhHhhhCCceEEEeeecCCCCCCCCCCHHHHHHHHHHHHhcCCCcEEEE
Q 028110 75 FSFLQTLRLRSIIYLCP---EPYP-E---ANTEFLKSNGIKLFQFAIEGHKEPFVNIPEDMIREALKVLLDVRNHPVLIH 147 (213)
Q Consensus 75 ~~~L~~lGIktVI~Lr~---e~~~-~---~~~~~~~~~Gi~~~~ipi~d~~~p~~~i~~~~i~~al~~i~d~~~~PVLVH 147 (213)
++..+++|++..+++.- ...+ + ...+.+.+.|+..+.+.=... ...+.++.+.++.+.+.-+-|+-+|
T Consensus 124 i~~ak~~G~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~Ga~~i~l~DT~G-----~~~P~~v~~lv~~l~~~~~~~l~~H 198 (275)
T cd07937 124 IKAVKKAGKHVEGAICYTGSPVHTLEYYVKLAKELEDMGADSICIKDMAG-----LLTPYAAYELVKALKKEVGLPIHLH 198 (275)
T ss_pred HHHHHHCCCeEEEEEEecCCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCC-----CCCHHHHHHHHHHHHHhCCCeEEEE
Confidence 35667888887776632 1111 1 123334567888776642211 2346788888888876445789999
Q ss_pred cCCCC
Q 028110 148 CKRGK 152 (213)
Q Consensus 148 C~~Gk 152 (213)
|+.-.
T Consensus 199 ~Hnd~ 203 (275)
T cd07937 199 THDTS 203 (275)
T ss_pred ecCCC
Confidence 87544
No 135
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=44.89 E-value=70 Score=31.30 Aligned_cols=82 Identities=17% Similarity=0.094 Sum_probs=47.3
Q ss_pred HHHHHhcCCcEEEEcCCC--CCC--C---chHhHhhhCCceEEEeeecCCCCCCCCCCHHHHHHHHHHHHhcCCCcEEEE
Q 028110 75 FSFLQTLRLRSIIYLCPE--PYP--E---ANTEFLKSNGIKLFQFAIEGHKEPFVNIPEDMIREALKVLLDVRNHPVLIH 147 (213)
Q Consensus 75 ~~~L~~lGIktVI~Lr~e--~~~--~---~~~~~~~~~Gi~~~~ipi~d~~~p~~~i~~~~i~~al~~i~d~~~~PVLVH 147 (213)
+...++.|....++++-. +.. + ...+.+.+.|...+.+ .|... -+.+..+.+.++.+.+.-+-||-+|
T Consensus 124 i~~ak~~G~~v~~~i~~t~~p~~~~~~~~~~~~~~~~~Gad~I~i--~Dt~G---~~~P~~v~~lv~~lk~~~~~pi~~H 198 (582)
T TIGR01108 124 IQAAKKHGAHAQGTISYTTSPVHTLETYLDLAEELLEMGVDSICI--KDMAG---ILTPKAAYELVSALKKRFGLPVHLH 198 (582)
T ss_pred HHHHHHcCCEEEEEEEeccCCCCCHHHHHHHHHHHHHcCCCEEEE--CCCCC---CcCHHHHHHHHHHHHHhCCCceEEE
Confidence 356677787777665422 211 1 2233345678776544 33211 1346778888888876556889999
Q ss_pred cCCCCChHHHHHHHHHH
Q 028110 148 CKRGKHRTGCLVGCLRK 164 (213)
Q Consensus 148 C~~Gk~RTG~vva~yl~ 164 (213)
|+. ..|+-+|-++.
T Consensus 199 ~Hn---t~Gla~An~la 212 (582)
T TIGR01108 199 SHA---TTGMAEMALLK 212 (582)
T ss_pred ecC---CCCcHHHHHHH
Confidence 876 44555555553
No 136
>PRK08862 short chain dehydrogenase; Provisional
Probab=44.83 E-value=81 Score=26.17 Aligned_cols=69 Identities=13% Similarity=0.135 Sum_probs=39.4
Q ss_pred HHHHhcCCcEEEEcCCCCCCCchHhHhhhCCceEEEeeecCCCCCCCCCCHHHHHHHHHHHHhcCC--CcEEEEcCCC
Q 028110 76 SFLQTLRLRSIIYLCPEPYPEANTEFLKSNGIKLFQFAIEGHKEPFVNIPEDMIREALKVLLDVRN--HPVLIHCKRG 151 (213)
Q Consensus 76 ~~L~~lGIktVI~Lr~e~~~~~~~~~~~~~Gi~~~~ipi~d~~~p~~~i~~~~i~~al~~i~d~~~--~PVLVHC~~G 151 (213)
..|.+.|.+.++.=|....-+...+.+++.|.+.+.+.++.. ..+++.++++.+.+.-+ --++|||.++
T Consensus 23 ~~la~~G~~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~D~~-------~~~~~~~~~~~~~~~~g~~iD~li~nag~ 93 (227)
T PRK08862 23 CHFARLGATLILCDQDQSALKDTYEQCSALTDNVYSFQLKDF-------SQESIRHLFDAIEQQFNRAPDVLVNNWTS 93 (227)
T ss_pred HHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCCeEEEEccCC-------CHHHHHHHHHHHHHHhCCCCCEEEECCcc
Confidence 467788998666545432111122223344555555554432 24678888887765323 3599999864
No 137
>PF00762 Ferrochelatase: Ferrochelatase; InterPro: IPR001015 Synonym(s): Protohaem ferro-lyase, Iron chelatase, etc. Ferrochelatase catalyses the last step in haem biosynthesis: the chelation of a ferrous ion to proto-porphyrin IX, to form protohaem [, ]. In eukaryotic cells, it binds to the mitochondrial inner membrane with its active site on the matrix side of the membrane. The X-ray structure of Bacillus subtilis and human ferrochelatase have been solved [, ]. The human enzyme exists as a homodimer. Each subunit contains one [2Fe-2S] cluster. The monomer is folded into two similar domains, each with a four-stranded parallel beta-sheet flanked by an alpha-helix in a beta-alpha-beta motif that is reminiscent of the fold found in the periplasmic binding proteins. The topological similarity between the domains suggests that they have arisen from a gene duplication event. However, significant differences exist between the two domains, including an N-terminal section (residues 80-130) that forms part of the active site pocket, and a C-terminal extension (residues 390-423) that is involved in coordination of the [2Fe-2S] cluster and in stabilisation of the homodimer. Ferrochelatase seems to have a structurally conserved core region that is common to the enzyme from bacteria, plants and mammals. Porphyrin binds in the identified cleft; this cleft also includes the metal-binding site of the enzyme. It is likely that the structure of the cleft region will have different conformations upon substrate binding and release [].; GO: 0004325 ferrochelatase activity, 0006783 heme biosynthetic process; PDB: 2QD3_B 2HRE_C 3HCN_B 2PNJ_A 2QD1_C 1HRK_A 2QD4_B 3AQI_B 2HRC_B 3HCO_B ....
Probab=44.38 E-value=68 Score=28.74 Aligned_cols=44 Identities=9% Similarity=0.120 Sum_probs=30.7
Q ss_pred cHHHHHhcCCcEEEEcCCC----------CCCCchHhHhhhCCc-eEEEeeecCC
Q 028110 74 NFSFLQTLRLRSIIYLCPE----------PYPEANTEFLKSNGI-KLFQFAIEGH 117 (213)
Q Consensus 74 ~~~~L~~lGIktVI~Lr~e----------~~~~~~~~~~~~~Gi-~~~~ipi~d~ 117 (213)
-++.|++.|++.|+-..+. +..-...+.+++.|+ ++..+|+...
T Consensus 246 ~l~~l~~~G~~~V~v~p~gFv~D~lETl~eidie~re~~~~~G~~~~~~ip~lN~ 300 (316)
T PF00762_consen 246 VLEELAKEGVKRVVVVPPGFVSDCLETLYEIDIEYRELAEEAGGEEFVRIPCLND 300 (316)
T ss_dssp HHHHHHHCT-SEEEEEETT-SSSSHHHHCCCCCHHHHHHHHHTCCEEEE---STT
T ss_pred HHHHHHhcCCCeEEEECCccccccHhHHHHHHHHHHHHHHHcCCceEEEeCCCCC
Confidence 5689999999999998864 222245777888999 9999998775
No 138
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=44.16 E-value=1.1e+02 Score=25.26 Aligned_cols=69 Identities=13% Similarity=0.049 Sum_probs=36.0
Q ss_pred HHHHhcCCcEEEEcCCCCCCCchHhHhhhCCceEEEeeecCCCCCCCCCCHHHHHHHHHHHHhc-CCCcEEEEcCCC
Q 028110 76 SFLQTLRLRSIIYLCPEPYPEANTEFLKSNGIKLFQFAIEGHKEPFVNIPEDMIREALKVLLDV-RNHPVLIHCKRG 151 (213)
Q Consensus 76 ~~L~~lGIktVI~Lr~e~~~~~~~~~~~~~Gi~~~~ipi~d~~~p~~~i~~~~i~~al~~i~d~-~~~PVLVHC~~G 151 (213)
..|.+.|.+.|+.-|.+.......+.+.+.|-+...+..+-. +.+.+.++++.+... .+--++|||.+.
T Consensus 25 ~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~-------~~~~~~~~~~~~~~~~~~~d~vi~~ag~ 94 (262)
T PRK13394 25 LELARAGAAVAIADLNQDGANAVADEINKAGGKAIGVAMDVT-------NEDAVNAGIDKVAERFGSVDILVSNAGI 94 (262)
T ss_pred HHHHHCCCeEEEEeCChHHHHHHHHHHHhcCceEEEEECCCC-------CHHHHHHHHHHHHHHcCCCCEEEECCcc
Confidence 567788987666555542111122223334444333332221 245677777766542 234599999865
No 139
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=44.03 E-value=2.1e+02 Score=25.97 Aligned_cols=72 Identities=13% Similarity=0.100 Sum_probs=44.7
Q ss_pred HHHHhcCCcEEEEcCCC-CCC-Cc---hHhHhhhCCceEEEeeecCCCCCCCCCCHHHHHHHHHHHHhcCCCcEEEEcCC
Q 028110 76 SFLQTLRLRSIIYLCPE-PYP-EA---NTEFLKSNGIKLFQFAIEGHKEPFVNIPEDMIREALKVLLDVRNHPVLIHCKR 150 (213)
Q Consensus 76 ~~L~~lGIktVI~Lr~e-~~~-~~---~~~~~~~~Gi~~~~ipi~d~~~p~~~i~~~~i~~al~~i~d~~~~PVLVHC~~ 150 (213)
+..++.|++..+++-.. ..+ +. ..+.+.+.|+..+.++=... ...+.++.+.++.+.+.-+-|+-+||+.
T Consensus 119 ~~ak~~G~~v~~~~eda~r~~~~~l~~~~~~~~~~g~~~i~l~DT~G-----~~~P~~v~~li~~l~~~~~~~l~~H~Hn 193 (363)
T TIGR02090 119 EYAKEHGLIVEFSAEDATRTDIDFLIKVFKRAEEAGADRINIADTVG-----VLTPQKMEELIKKLKENVKLPISVHCHN 193 (363)
T ss_pred HHHHHcCCEEEEEEeecCCCCHHHHHHHHHHHHhCCCCEEEEeCCCC-----ccCHHHHHHHHHHHhcccCceEEEEecC
Confidence 46778899877776322 111 12 22334567888776653321 2346788889988876545788899986
Q ss_pred CC
Q 028110 151 GK 152 (213)
Q Consensus 151 Gk 152 (213)
-.
T Consensus 194 d~ 195 (363)
T TIGR02090 194 DF 195 (363)
T ss_pred CC
Confidence 43
No 140
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=43.87 E-value=84 Score=30.82 Aligned_cols=82 Identities=15% Similarity=0.058 Sum_probs=48.5
Q ss_pred HHHHHhcCCcEEEEcCC--CCCC--C---chHhHhhhCCceEEEeeecCCCCCCCCCCHHHHHHHHHHHHhcCCCcEEEE
Q 028110 75 FSFLQTLRLRSIIYLCP--EPYP--E---ANTEFLKSNGIKLFQFAIEGHKEPFVNIPEDMIREALKVLLDVRNHPVLIH 147 (213)
Q Consensus 75 ~~~L~~lGIktVI~Lr~--e~~~--~---~~~~~~~~~Gi~~~~ipi~d~~~p~~~i~~~~i~~al~~i~d~~~~PVLVH 147 (213)
+...++.|.....+++- .+.. + ...+.+.+.|+..+.+. |... ...+..+.+.++.+.+.-+-||-+|
T Consensus 129 i~~ak~~G~~v~~~i~~t~~p~~t~~~~~~~a~~l~~~Gad~I~i~--Dt~G---~~~P~~~~~lv~~lk~~~~~pi~~H 203 (592)
T PRK09282 129 IKAAKKAGAHVQGTISYTTSPVHTIEKYVELAKELEEMGCDSICIK--DMAG---LLTPYAAYELVKALKEEVDLPVQLH 203 (592)
T ss_pred HHHHHHcCCEEEEEEEeccCCCCCHHHHHHHHHHHHHcCCCEEEEC--CcCC---CcCHHHHHHHHHHHHHhCCCeEEEE
Confidence 35666778777766642 2211 1 22333456788766553 3211 2346778888888876546899999
Q ss_pred cCCCCChHHHHHHHHHH
Q 028110 148 CKRGKHRTGCLVGCLRK 164 (213)
Q Consensus 148 C~~Gk~RTG~vva~yl~ 164 (213)
|+. .+|+.+|-++.
T Consensus 204 ~Hn---t~Gla~An~la 217 (592)
T PRK09282 204 SHC---TSGLAPMTYLK 217 (592)
T ss_pred EcC---CCCcHHHHHHH
Confidence 976 45555666654
No 141
>cd01531 Acr2p Eukaryotic arsenate resistance proteins are members of the Rhodanese Homology Domain superfamily. Included in this CD is the Saccharomyces cerevisiae arsenate reductase protein, Acr2p, and other yeast and plant homologs.
Probab=43.45 E-value=43 Score=24.56 Aligned_cols=23 Identities=17% Similarity=0.352 Sum_probs=15.5
Q ss_pred CCCcEEEEcCCCCChHHHHHHHH
Q 028110 140 RNHPVLIHCKRGKHRTGCLVGCL 162 (213)
Q Consensus 140 ~~~PVLVHC~~Gk~RTG~vva~y 162 (213)
.+.+|+|||..+..|....+..+
T Consensus 61 ~~~~iv~yC~~~~~r~~~aa~~l 83 (113)
T cd01531 61 KKDTVVFHCALSQVRGPSAARKF 83 (113)
T ss_pred CCCeEEEEeecCCcchHHHHHHH
Confidence 46799999984445766555443
No 142
>PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A ....
Probab=43.31 E-value=26 Score=31.95 Aligned_cols=68 Identities=12% Similarity=0.191 Sum_probs=45.6
Q ss_pred EEcCCCCCCCchHhHhhhCCceEEEeeecCCCCCCCCCCHHHHHHHHHHHHhcCCCcEEEEcCCCCChHHHH
Q 028110 87 IYLCPEPYPEANTEFLKSNGIKLFQFAIEGHKEPFVNIPEDMIREALKVLLDVRNHPVLIHCKRGKHRTGCL 158 (213)
Q Consensus 87 I~Lr~e~~~~~~~~~~~~~Gi~~~~ipi~d~~~p~~~i~~~~i~~al~~i~d~~~~PVLVHC~~Gk~RTG~v 158 (213)
+-+.++.-......++.-.|+....+|+.... .+..+.++++++...+....|++|-+++|---||.+
T Consensus 143 ~i~~s~~aH~S~~Kaa~~lGlg~~~I~~~~~~----~md~~~L~~~l~~~~~~g~~p~~vvat~Gtt~~Ga~ 210 (373)
T PF00282_consen 143 VIYVSEQAHYSIEKAARILGLGVRKIPTDEDG----RMDIEALEKALEKDIANGKTPFAVVATAGTTNTGAI 210 (373)
T ss_dssp EEEEETTS-THHHHHHHHTTSEEEEE-BBTTS----SB-HHHHHHHHHHHHHTTEEEEEEEEEBS-TTTSBB
T ss_pred ccccccccccHHHHhcceeeeEEEEecCCcch----hhhHHHhhhhhcccccccccceeeeccCCCcccccc
Confidence 33334433346777788899999999988742 356778888887776544568899999998777653
No 143
>cd02007 TPP_DXS Thiamine pyrophosphate (TPP) family, DXS subfamily, TPP-binding module; 1-Deoxy-D-xylulose-5-phosphate synthase (DXS) is a regulatory enzyme of the mevalonate-independent pathway involved in terpenoid biosynthesis. Terpeniods are plant natural products with important pharmaceutical activity. DXS catalyzes a transketolase-type condensation of pyruvate with D-glyceraldehyde-3-phosphate to form 1-deoxy-D-xylulose-5-phosphate (DXP) and carbon dioxide. The formation of DXP leads to the formation of the terpene precursor IPP (isopentyl diphosphate) and to the formation of thiamine (vitamin B1) and pyridoxal (vitamin B6).
Probab=43.17 E-value=77 Score=26.13 Aligned_cols=64 Identities=19% Similarity=0.282 Sum_probs=37.9
Q ss_pred hcCCcEEEEcCCCCC---CCchHhHhhhCCceEEEeeecCCCCCCCCCCHHHHHHHHHHHHhcCCCcEEEEcCCCC
Q 028110 80 TLRLRSIIYLCPEPY---PEANTEFLKSNGIKLFQFAIEGHKEPFVNIPEDMIREALKVLLDVRNHPVLIHCKRGK 152 (213)
Q Consensus 80 ~lGIktVI~Lr~e~~---~~~~~~~~~~~Gi~~~~ipi~d~~~p~~~i~~~~i~~al~~i~d~~~~PVLVHC~~Gk 152 (213)
..++..||+-..-.. .......++..|..+.. +++++ +.+.+.++++...+ .++|.+|||..=|
T Consensus 125 ~~~li~vvdnN~~~~~~~~~~~~~~~~a~G~~~~~-~vdG~-------d~~~l~~a~~~a~~-~~~P~~I~~~T~k 191 (195)
T cd02007 125 KSNMIVILNDNEMSISPNVGTPGNLFEELGFRYIG-PVDGH-------NIEALIKVLKEVKD-LKGPVLLHVVTKK 191 (195)
T ss_pred CCCEEEEEECCCcccCCCCCCHHHHHHhcCCCccc-eECCC-------CHHHHHHHHHHHHh-CCCCEEEEEEEec
Confidence 556766776654321 11344555667776654 34443 24677778777654 5789998886544
No 144
>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional
Probab=43.00 E-value=54 Score=28.44 Aligned_cols=43 Identities=5% Similarity=-0.114 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHhcCCCcEEEEcCCCCChHHHHHHHHHHHCCCC
Q 028110 126 EDMIREALKVLLDVRNHPVLIHCKRGKHRTGCLVGCLRKLQKWC 169 (213)
Q Consensus 126 ~~~i~~al~~i~d~~~~PVLVHC~~Gk~RTG~vva~yl~~~gws 169 (213)
.+.+.+.++.+--..+.+|+|+|..|. +.+..++..+...|..
T Consensus 72 ~~~~~~~~~~~Gi~~d~~VVvyc~~~~-~~a~~~~~~l~~~G~~ 114 (281)
T PRK11493 72 PETFAVAMRELGVNQDKHLVVYDEGNL-FSAPRAWWMLRTFGVE 114 (281)
T ss_pred HHHHHHHHHHcCCCCCCEEEEECCCCC-chHHHHHHHHHHhcCC
Confidence 456666666653246789999998764 4444444444445554
No 145
>COG1054 Predicted sulfurtransferase [General function prediction only]
Probab=42.66 E-value=1.1e+02 Score=27.60 Aligned_cols=88 Identities=19% Similarity=0.192 Sum_probs=46.5
Q ss_pred cccceEEcCCCChhcHHHHHhcCCcEEEEcCCC-CCCCchHhHhhhCCceEEEeeecCCCCCCCCCCHHHHHHHHHHHHh
Q 028110 60 VDNGIFRSGFPDSANFSFLQTLRLRSIIYLCPE-PYPEANTEFLKSNGIKLFQFAIEGHKEPFVNIPEDMIREALKVLLD 138 (213)
Q Consensus 60 V~~~Lyrs~~p~~~~~~~L~~lGIktVI~Lr~e-~~~~~~~~~~~~~Gi~~~~ipi~d~~~p~~~i~~~~i~~al~~i~d 138 (213)
|+|.-.+|-.+.+.+|..+-.-.=..|||.|.. ++ -|-++ .+.-.| .-+.++++..++.+
T Consensus 105 v~p~~~vG~yl~p~~wn~~l~D~~~vviDtRN~YE~-----------~iG~F----~gAv~p----~~~tFrefP~~v~~ 165 (308)
T COG1054 105 VDPLENVGTYLSPKDWNELLSDPDVVVIDTRNDYEV-----------AIGHF----EGAVEP----DIETFREFPAWVEE 165 (308)
T ss_pred cCccccccCccCHHHHHHHhcCCCeEEEEcCcceeE-----------eeeee----cCccCC----ChhhhhhhHHHHHH
Confidence 344444566666777754443333778888875 21 01111 111112 22445555555442
Q ss_pred ----cCCCcEEEEcCCCCChHHHHHHHHHHHCCC
Q 028110 139 ----VRNHPVLIHCKRGKHRTGCLVGCLRKLQKW 168 (213)
Q Consensus 139 ----~~~~PVLVHC~~Gk~RTG~vva~yl~~~gw 168 (213)
..+++|.+.|++|+ |---.++ ||+-.|.
T Consensus 166 ~~~~~~~KkVvmyCTGGI-RCEKas~-~m~~~GF 197 (308)
T COG1054 166 NLDLLKDKKVVMYCTGGI-RCEKASA-WMKENGF 197 (308)
T ss_pred HHHhccCCcEEEEcCCce-eehhhHH-HHHHhcc
Confidence 35779999999998 7544433 4444443
No 146
>cd01520 RHOD_YbbB Member of the Rhodanese Homology Domain superfamily. This CD includes several putative ATP /GTP binding proteins including E. coli YbbB.
Probab=42.65 E-value=39 Score=25.57 Aligned_cols=28 Identities=32% Similarity=0.449 Sum_probs=18.7
Q ss_pred CCCcEEEEcCCCCChHHHHHHHHHHHCCC
Q 028110 140 RNHPVLIHCKRGKHRTGCLVGCLRKLQKW 168 (213)
Q Consensus 140 ~~~PVLVHC~~Gk~RTG~vva~yl~~~gw 168 (213)
++.+|+|+|..|-.|+..++ .++...|.
T Consensus 85 ~~~~vvvyC~~~G~rs~~a~-~~L~~~G~ 112 (128)
T cd01520 85 RDPKLLIYCARGGMRSQSLA-WLLESLGI 112 (128)
T ss_pred CCCeEEEEeCCCCccHHHHH-HHHHHcCC
Confidence 57899999975434776554 44455676
No 147
>PRK05867 short chain dehydrogenase; Provisional
Probab=42.55 E-value=93 Score=25.73 Aligned_cols=70 Identities=7% Similarity=-0.084 Sum_probs=37.7
Q ss_pred HHHHHhcCCcEEEEcCCCCCCCchHhHhhhCCceEEEeeecCCCCCCCCCCHHHHHHHHHHHHhcC-CCcEEEEcCCC
Q 028110 75 FSFLQTLRLRSIIYLCPEPYPEANTEFLKSNGIKLFQFAIEGHKEPFVNIPEDMIREALKVLLDVR-NHPVLIHCKRG 151 (213)
Q Consensus 75 ~~~L~~lGIktVI~Lr~e~~~~~~~~~~~~~Gi~~~~ipi~d~~~p~~~i~~~~i~~al~~i~d~~-~~PVLVHC~~G 151 (213)
...|.+.|.+.|+.-|..+..+...+.++..|-+...+.++-. ..+.+.++++.+.+.- .--++|||.+.
T Consensus 26 a~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~-------~~~~~~~~~~~~~~~~g~id~lv~~ag~ 96 (253)
T PRK05867 26 ALAYVEAGAQVAIAARHLDALEKLADEIGTSGGKVVPVCCDVS-------QHQQVTSMLDQVTAELGGIDIAVCNAGI 96 (253)
T ss_pred HHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCeEEEEEccCC-------CHHHHHHHHHHHHHHhCCCCEEEECCCC
Confidence 3577788998776655432111122223333434433333221 2467777887776532 34599999754
No 148
>PRK12571 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=42.09 E-value=44 Score=32.97 Aligned_cols=47 Identities=23% Similarity=0.422 Sum_probs=32.5
Q ss_pred hHhhhCCceEEEeeecCCCCCCCCCCHHHHHHHHHHHHhcCCCcEEEEcCCCCCh
Q 028110 100 EFLKSNGIKLFQFAIEGHKEPFVNIPEDMIREALKVLLDVRNHPVLIHCKRGKHR 154 (213)
Q Consensus 100 ~~~~~~Gi~~~~ipi~d~~~p~~~i~~~~i~~al~~i~d~~~~PVLVHC~~Gk~R 154 (213)
..+++.|.+|+. |+++++ .+.+.++|+...+..++|++|||..=|++
T Consensus 240 ~~f~a~G~~~~~-~vdGhd-------~~~l~~al~~ak~~~~~P~~I~~~T~kGk 286 (641)
T PRK12571 240 TLFEELGFTYVG-PIDGHD-------MEALLSVLRAARARADGPVLVHVVTEKGR 286 (641)
T ss_pred hHHHHcCCEEEC-ccCCCC-------HHHHHHHHHHHHhCCCCCEEEEEEecCcc
Confidence 455667776662 566652 46788888876643578999999776655
No 149
>cd01445 TST_Repeats Thiosulfate sulfurtransferases (TST) contain 2 copies of the Rhodanese Homology Domain. Only the second repeat contains the catalytically active Cys residue. The role of the 1st repeat is uncertain, but believed to be involved in protein interaction. This CD aligns the 1st and 2nd repeats.
Probab=41.88 E-value=80 Score=24.46 Aligned_cols=45 Identities=9% Similarity=-0.089 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHhcCCCcEEEEcCC-CCChHHHHHHHHHHHCCCCH
Q 028110 126 EDMIREALKVLLDVRNHPVLIHCKR-GKHRTGCLVGCLRKLQKWCL 170 (213)
Q Consensus 126 ~~~i~~al~~i~d~~~~PVLVHC~~-Gk~RTG~vva~yl~~~gws~ 170 (213)
.+.+.+.+..+-=..+.+|+|.|.. +.+..++.+...+.+.|...
T Consensus 80 ~~~~~~~~~~~GI~~~~~vVvY~~~~~~g~~A~r~~~~l~~~G~~~ 125 (138)
T cd01445 80 EAEFAAMFEAKGIDLDKHLIATDGDDLGGFTACHIALAARLCGHPD 125 (138)
T ss_pred HHHHHHHHHHcCCCCCCeEEEECCCCCcchHHHHHHHHHHHcCCCC
Confidence 3456666655422357899999975 22344455555556677654
No 150
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=40.47 E-value=2.1e+02 Score=24.58 Aligned_cols=72 Identities=13% Similarity=0.146 Sum_probs=42.7
Q ss_pred HHHHhcCCcEEEEcCCCCC-C-Cc---hHhHhhhCCceEEEeeecCCCCCCCCCCHHHHHHHHHHHHhcCC---CcEEEE
Q 028110 76 SFLQTLRLRSIIYLCPEPY-P-EA---NTEFLKSNGIKLFQFAIEGHKEPFVNIPEDMIREALKVLLDVRN---HPVLIH 147 (213)
Q Consensus 76 ~~L~~lGIktVI~Lr~e~~-~-~~---~~~~~~~~Gi~~~~ipi~d~~~p~~~i~~~~i~~al~~i~d~~~---~PVLVH 147 (213)
...+++|++..++.-.... + +. ..+.+.+.|+..+.++ |... ...+.++.+.++.+.+.-+ -|+-+|
T Consensus 121 ~~a~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~G~~~i~l~--DT~G---~~~P~~v~~lv~~l~~~~~~~~i~l~~H 195 (268)
T cd07940 121 EYAKSHGLDVEFSAEDATRTDLDFLIEVVEAAIEAGATTINIP--DTVG---YLTPEEFGELIKKLKENVPNIKVPISVH 195 (268)
T ss_pred HHHHHcCCeEEEeeecCCCCCHHHHHHHHHHHHHcCCCEEEEC--CCCC---CCCHHHHHHHHHHHHHhCCCCceeEEEE
Confidence 4667789886665432211 1 11 2233456788766554 3211 2356788889988876433 688899
Q ss_pred cCCCC
Q 028110 148 CKRGK 152 (213)
Q Consensus 148 C~~Gk 152 (213)
|+...
T Consensus 196 ~Hn~~ 200 (268)
T cd07940 196 CHNDL 200 (268)
T ss_pred ecCCc
Confidence 88644
No 151
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=39.98 E-value=2.4e+02 Score=24.10 Aligned_cols=72 Identities=13% Similarity=0.031 Sum_probs=43.8
Q ss_pred HHHHhcCCcEEEEcCCCC-CC-Cch---HhHhhhCCceEEEeeecCCCCCCCCCCHHHHHHHHHHHHhcCCCcEEEEcCC
Q 028110 76 SFLQTLRLRSIIYLCPEP-YP-EAN---TEFLKSNGIKLFQFAIEGHKEPFVNIPEDMIREALKVLLDVRNHPVLIHCKR 150 (213)
Q Consensus 76 ~~L~~lGIktVI~Lr~e~-~~-~~~---~~~~~~~Gi~~~~ipi~d~~~p~~~i~~~~i~~al~~i~d~~~~PVLVHC~~ 150 (213)
+..++.|+...+++-... .+ +.. .+.+.+.|+..+.++=... .+.++++.+.++.+.+.-+-|+-+||+.
T Consensus 117 ~~a~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~G~~~i~l~DT~G-----~~~P~~v~~lv~~l~~~~~~~l~~H~Hn 191 (259)
T cd07939 117 GRAKDRGLFVSVGAEDASRADPDFLIEFAEVAQEAGADRLRFADTVG-----ILDPFTTYELIRRLRAATDLPLEFHAHN 191 (259)
T ss_pred HHHHHCCCeEEEeeccCCCCCHHHHHHHHHHHHHCCCCEEEeCCCCC-----CCCHHHHHHHHHHHHHhcCCeEEEEecC
Confidence 466788997776664321 11 122 2334567888776543221 2346788888888876444688888876
Q ss_pred CC
Q 028110 151 GK 152 (213)
Q Consensus 151 Gk 152 (213)
-.
T Consensus 192 ~~ 193 (259)
T cd07939 192 DL 193 (259)
T ss_pred CC
Confidence 44
No 152
>PRK06947 glucose-1-dehydrogenase; Provisional
Probab=39.79 E-value=1.2e+02 Score=24.71 Aligned_cols=69 Identities=9% Similarity=0.016 Sum_probs=36.6
Q ss_pred HHHHhcCCcEEEEcCCC-CCCCchHhHhhhCCceEEEeeecCCCCCCCCCCHHHHHHHHHHHHhcCCC-cEEEEcCCC
Q 028110 76 SFLQTLRLRSIIYLCPE-PYPEANTEFLKSNGIKLFQFAIEGHKEPFVNIPEDMIREALKVLLDVRNH-PVLIHCKRG 151 (213)
Q Consensus 76 ~~L~~lGIktVI~Lr~e-~~~~~~~~~~~~~Gi~~~~ipi~d~~~p~~~i~~~~i~~al~~i~d~~~~-PVLVHC~~G 151 (213)
..|.+.|.+.|+..+.. +........++..+-+...++++-. +.+.+.++++.+.+.-+. -++|||.+.
T Consensus 20 ~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~-------~~~~~~~~~~~~~~~~~~id~li~~ag~ 90 (248)
T PRK06947 20 VLAAARGWSVGINYARDAAAAEETADAVRAAGGRACVVAGDVA-------NEADVIAMFDAVQSAFGRLDALVNNAGI 90 (248)
T ss_pred HHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCcEEEEEeccC-------CHHHHHHHHHHHHHhcCCCCEEEECCcc
Confidence 56677898877665432 1111112223333434444444332 245677777777653222 399999864
No 153
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=39.63 E-value=42 Score=27.81 Aligned_cols=29 Identities=3% Similarity=-0.054 Sum_probs=23.8
Q ss_pred CCCcEEEEcCCCCChHHHHHHHHHHHCCC
Q 028110 140 RNHPVLIHCKRGKHRTGCLVGCLRKLQKW 168 (213)
Q Consensus 140 ~~~PVLVHC~~Gk~RTG~vva~yl~~~gw 168 (213)
.++=|.|+|..|||.|-...+.-+...|+
T Consensus 20 ~~Gli~VYtGdGKGKTTAAlGlalRAaG~ 48 (178)
T PRK07414 20 IEGLVQVFTSSQRNFFTSVMAQALRIAGQ 48 (178)
T ss_pred CCCEEEEEeCCCCCchHHHHHHHHHHhcC
Confidence 56789999999999998888887765444
No 154
>COG3830 ACT domain-containing protein [Signal transduction mechanisms]
Probab=39.61 E-value=11 Score=27.82 Aligned_cols=26 Identities=23% Similarity=0.268 Sum_probs=19.7
Q ss_pred CCCCChHHHHHHHHHHH--CCCCHHHHH
Q 028110 149 KRGKHRTGCLVGCLRKL--QKWCLSSVF 174 (213)
Q Consensus 149 ~~Gk~RTG~vva~yl~~--~gws~e~al 174 (213)
-.|+||+|.+++....+ .|....++-
T Consensus 8 V~GkDr~GIva~is~vLAe~~vNIldis 35 (90)
T COG3830 8 VIGKDRVGIVAAVSRVLAEHGVNILDIS 35 (90)
T ss_pred EEcCCCCchhHHHHHHHHHcCCcEEEHH
Confidence 36999999999999886 576554443
No 155
>COG1735 Php Predicted metal-dependent hydrolase with the TIM-barrel fold [General function prediction only]
Probab=39.32 E-value=2.2e+02 Score=25.87 Aligned_cols=33 Identities=18% Similarity=0.090 Sum_probs=25.0
Q ss_pred CCCcEEEEcCCCCChHHHHHHHHHHHCCCCHHHHH
Q 028110 140 RNHPVLIHCKRGKHRTGCLVGCLRKLQKWCLSSVF 174 (213)
Q Consensus 140 ~~~PVLVHC~~Gk~RTG~vva~yl~~~gws~e~al 174 (213)
.+-|+.+|=..|- .|.=..-++.-.|++++.+.
T Consensus 164 Tg~Pi~tHt~~gt--~g~eq~~il~~egvdl~~v~ 196 (316)
T COG1735 164 TGAPISTHTPAGT--MGLEQLRILAEEGVDLRKVS 196 (316)
T ss_pred cCCCeEEeccchh--hhHHHHHHHHHcCCChhHee
Confidence 5789999998886 77777777666788776554
No 156
>PRK12937 short chain dehydrogenase; Provisional
Probab=39.27 E-value=1.3e+02 Score=24.46 Aligned_cols=69 Identities=6% Similarity=-0.016 Sum_probs=38.8
Q ss_pred HHHHhcCCcEEEEcCCCCCC-CchHhHhhhCCceEEEeeecCCCCCCCCCCHHHHHHHHHHHHhcCC-CcEEEEcCCC
Q 028110 76 SFLQTLRLRSIIYLCPEPYP-EANTEFLKSNGIKLFQFAIEGHKEPFVNIPEDMIREALKVLLDVRN-HPVLIHCKRG 151 (213)
Q Consensus 76 ~~L~~lGIktVI~Lr~e~~~-~~~~~~~~~~Gi~~~~ipi~d~~~p~~~i~~~~i~~al~~i~d~~~-~PVLVHC~~G 151 (213)
..|.+.|.+.++..+..+.. ....+.+...+-+...+.++-. ..+.+.++++.+.+.-+ --++|||.+.
T Consensus 23 ~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~-------~~~~~~~~~~~~~~~~~~id~vi~~ag~ 93 (245)
T PRK12937 23 RRLAADGFAVAVNYAGSAAAADELVAEIEAAGGRAIAVQADVA-------DAAAVTRLFDAAETAFGRIDVLVNNAGV 93 (245)
T ss_pred HHHHHCCCEEEEecCCCHHHHHHHHHHHHhcCCeEEEEECCCC-------CHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 57778899887776654211 1122223334444444444332 24677778887765322 3499999764
No 157
>PF13607 Succ_CoA_lig: Succinyl-CoA ligase like flavodoxin domain; PDB: 2CSU_A.
Probab=37.97 E-value=88 Score=24.57 Aligned_cols=73 Identities=16% Similarity=0.286 Sum_probs=33.5
Q ss_pred HHHHHh--cCCcEEEEcCCCCCC---CchHhHhhhCCceEEEeeecCCCCCCCCCCHHHHHHHHHHHHhcCCCcEEEEcC
Q 028110 75 FSFLQT--LRLRSIIYLCPEPYP---EANTEFLKSNGIKLFQFAIEGHKEPFVNIPEDMIREALKVLLDVRNHPVLIHCK 149 (213)
Q Consensus 75 ~~~L~~--lGIktVI~Lr~e~~~---~~~~~~~~~~Gi~~~~ipi~d~~~p~~~i~~~~i~~al~~i~d~~~~PVLVHC~ 149 (213)
+..+.+ .|+.++|++-.+..- +...-+..+...+.+-+-+++-..| ..+.++++... ..+||++ ++
T Consensus 18 ~~~~~~~g~g~s~~vs~Gn~~dv~~~d~l~~~~~D~~t~~I~ly~E~~~d~------~~f~~~~~~a~--~~KPVv~-lk 88 (138)
T PF13607_consen 18 LDWAQDRGIGFSYVVSVGNEADVDFADLLEYLAEDPDTRVIVLYLEGIGDG------RRFLEAARRAA--RRKPVVV-LK 88 (138)
T ss_dssp HHHHHHTT-EESEEEE-TT-SSS-HHHHHHHHCT-SS--EEEEEES--S-H------HHHHHHHHHHC--CCS-EEE-EE
T ss_pred HHHHHHcCCCeeEEEEeCccccCCHHHHHHHHhcCCCCCEEEEEccCCCCH------HHHHHHHHHHh--cCCCEEE-Ee
Confidence 344444 689999999886321 1223333557889999988886443 34444544443 3489988 67
Q ss_pred CCCChHH
Q 028110 150 RGKHRTG 156 (213)
Q Consensus 150 ~Gk~RTG 156 (213)
.|..-.|
T Consensus 89 ~Grt~~g 95 (138)
T PF13607_consen 89 AGRTEAG 95 (138)
T ss_dssp -------
T ss_pred CCCchhh
Confidence 7753333
No 158
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=37.57 E-value=1.4e+02 Score=24.65 Aligned_cols=70 Identities=17% Similarity=0.130 Sum_probs=37.5
Q ss_pred HHHHhcCCcEEEEcCCCCCCCchHhHhhhCCceEEEeeecCCCCCCCCCCHHHHHHHHHHHHhcC-CCcEEEEcCCCC
Q 028110 76 SFLQTLRLRSIIYLCPEPYPEANTEFLKSNGIKLFQFAIEGHKEPFVNIPEDMIREALKVLLDVR-NHPVLIHCKRGK 152 (213)
Q Consensus 76 ~~L~~lGIktVI~Lr~e~~~~~~~~~~~~~Gi~~~~ipi~d~~~p~~~i~~~~i~~al~~i~d~~-~~PVLVHC~~Gk 152 (213)
..|.+.|.+.|+.-|.++......+.++..|.+...+..+-. +.+.+.++++.+.+.- .--++|||.+..
T Consensus 28 ~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~~D~~-------~~~~~~~~~~~~~~~~~~~d~li~~ag~~ 98 (255)
T PRK07523 28 EGLAQAGAEVILNGRDPAKLAAAAESLKGQGLSAHALAFDVT-------DHDAVRAAIDAFEAEIGPIDILVNNAGMQ 98 (255)
T ss_pred HHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCceEEEEEccCC-------CHHHHHHHHHHHHHhcCCCCEEEECCCCC
Confidence 466678987555444432111122233444555554444332 2467777877766532 234899997653
No 159
>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=37.54 E-value=2e+02 Score=23.69 Aligned_cols=65 Identities=9% Similarity=0.100 Sum_probs=36.8
Q ss_pred HHHHHhcCCcEEEEcCCCCCCCchHhHhhhCCceEEEeeecCCCCCCCCCCHHHHHHHHHHHHhcCC-CcEEEEcCCC
Q 028110 75 FSFLQTLRLRSIIYLCPEPYPEANTEFLKSNGIKLFQFAIEGHKEPFVNIPEDMIREALKVLLDVRN-HPVLIHCKRG 151 (213)
Q Consensus 75 ~~~L~~lGIktVI~Lr~e~~~~~~~~~~~~~Gi~~~~ipi~d~~~p~~~i~~~~i~~al~~i~d~~~-~PVLVHC~~G 151 (213)
...|.+.|.+.++..+..+ ...+.+...++.++...+.+ .+.+.++++.+.+.-+ --++|||.+.
T Consensus 24 a~~l~~~G~~v~~~~~~~~---~~~~~l~~~~~~~~~~Dl~~---------~~~~~~~~~~~~~~~~~id~li~~ag~ 89 (255)
T PRK06463 24 AEAFLREGAKVAVLYNSAE---NEAKELREKGVFTIKCDVGN---------RDQVKKSKEVVEKEFGRVDVLVNNAGI 89 (255)
T ss_pred HHHHHHCCCEEEEEeCCcH---HHHHHHHhCCCeEEEecCCC---------HHHHHHHHHHHHHHcCCCCEEEECCCc
Confidence 3567788987666544332 11222333455554433333 4678878887765322 3599999754
No 160
>TIGR03799 NOD_PanD_pyr putative pyridoxal-dependent aspartate 1-decarboxylase. This enzyme is proposed here to be a form of aspartate 1-decarboxylase, pyridoxal-dependent, that represents a non-orthologous displacement to the more widely distributed pyruvoyl-dependent form (TIGR00223). Aspartate 1-decarboxylase makes beta-alanine, used usually in pathothenate biosynthesis, by decarboxylation from asparatate. A number of species with the PanB and PanC enzymes, however, lack PanD. This protein family occurs in a number of Proteobacteria that lack PanD. This enzyme family appears to be a pyridoxal-dependent enzyme (see pfam00282). The family was identified by Partial Phylogenetic Profiling; members in Geobacter sulfurreducens, G. metallireducens, and Pseudoalteromonas atlantica are clustered with the genes for PanB and PanC. We suggest the gene symbol panP (panthothenate biosynthesis enzyme, Pyridoxal-dependent).
Probab=37.40 E-value=89 Score=30.07 Aligned_cols=57 Identities=21% Similarity=0.273 Sum_probs=37.1
Q ss_pred chHhHhhhCCc---eEEEeeecCCCCCCCCCCHHHHHHHHHHHHhcCCCcEEEEcCCCCChHHH
Q 028110 97 ANTEFLKSNGI---KLFQFAIEGHKEPFVNIPEDMIREALKVLLDVRNHPVLIHCKRGKHRTGC 157 (213)
Q Consensus 97 ~~~~~~~~~Gi---~~~~ipi~d~~~p~~~i~~~~i~~al~~i~d~~~~PVLVHC~~Gk~RTG~ 157 (213)
.....+...|+ +++.+|+++.. .+..+.++++++........|+.|-+.+|-.-||.
T Consensus 221 S~~kaa~~lglg~~~v~~vp~d~~g----~~d~~~L~~~i~~~~~~g~~~~~vvataGtt~tGa 280 (522)
T TIGR03799 221 SLGKAADVLGIGRDNLIAIKTDANN----RIDVDALRDKCAELAEQNIKPLAIVGVAGTTETGN 280 (522)
T ss_pred HHHHHHHHcCCCcccEEEEEeCCCC----cCCHHHHHHHHHHHHHCCCCcEEEEEEecCcCCCC
Confidence 45556666788 67888886542 45677888887765544445776655677655554
No 161
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=37.26 E-value=1.5e+02 Score=26.08 Aligned_cols=73 Identities=14% Similarity=0.054 Sum_probs=44.3
Q ss_pred HHHHHhcCCcEEEEcCCC--CC---CCc---hHhHhhhCCceEEEeeecCCCCCCCCCCHHHHHHHHHHHHhc-CCCcEE
Q 028110 75 FSFLQTLRLRSIIYLCPE--PY---PEA---NTEFLKSNGIKLFQFAIEGHKEPFVNIPEDMIREALKVLLDV-RNHPVL 145 (213)
Q Consensus 75 ~~~L~~lGIktVI~Lr~e--~~---~~~---~~~~~~~~Gi~~~~ipi~d~~~p~~~i~~~~i~~al~~i~d~-~~~PVL 145 (213)
+...+++|+...+++-.- ++ ++. ..+.+.+.|++.+.++=... -..+.++.+.++.+.+. .+-|+-
T Consensus 121 i~~a~~~G~~v~~~~~d~~~~~r~~~~~~~~~~~~~~~~G~~~i~l~DT~G-----~~~P~~v~~l~~~l~~~~~~~~i~ 195 (280)
T cd07945 121 IEYAIKNGIEVNIYLEDWSNGMRDSPDYVFQLVDFLSDLPIKRIMLPDTLG-----ILSPFETYTYISDMVKRYPNLHFD 195 (280)
T ss_pred HHHHHhCCCEEEEEEEeCCCCCcCCHHHHHHHHHHHHHcCCCEEEecCCCC-----CCCHHHHHHHHHHHHhhCCCCeEE
Confidence 356678899988888531 11 111 23334568988776653221 12456788888888753 346888
Q ss_pred EEcCCCC
Q 028110 146 IHCKRGK 152 (213)
Q Consensus 146 VHC~~Gk 152 (213)
+||+.-.
T Consensus 196 ~H~Hnd~ 202 (280)
T cd07945 196 FHAHNDY 202 (280)
T ss_pred EEeCCCC
Confidence 8887643
No 162
>TIGR00173 menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase. 2-oxoglutarate decarboxylase/SHCHC synthase (menD) is a thiamine pyrophosphate enzyme involved in menaquinone biosynthesis.
Probab=37.19 E-value=2e+02 Score=26.57 Aligned_cols=39 Identities=8% Similarity=-0.032 Sum_probs=26.6
Q ss_pred HHHHHhcCCcEEEEcCCCCCCCchHhHh-hhCCceEEEeee
Q 028110 75 FSFLQTLRLRSIIYLCPEPYPEANTEFL-KSNGIKLFQFAI 114 (213)
Q Consensus 75 ~~~L~~lGIktVI~Lr~e~~~~~~~~~~-~~~Gi~~~~ipi 114 (213)
+..|+++||++|+-+-..... ...+.+ +..||+++...=
T Consensus 7 ~~~L~~~GV~~vFg~pG~~~~-~l~dal~~~~~i~~v~~~h 46 (432)
T TIGR00173 7 VEELVRLGVRHVVISPGSRST-PLALAAAEHPRLRVHVHID 46 (432)
T ss_pred HHHHHHcCCCEEEECCCcccH-HHHHHHHhCCCcEEEEecC
Confidence 478999999999999887432 233333 336888886543
No 163
>KOG1529 consensus Mercaptopyruvate sulfurtransferase/thiosulfate sulfurtransferase [Defense mechanisms]
Probab=36.99 E-value=56 Score=29.16 Aligned_cols=38 Identities=13% Similarity=0.174 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHhcCCCcEEEEcCCCCChHHHHHHHHH
Q 028110 126 EDMIREALKVLLDVRNHPVLIHCKRGKHRTGCLVGCLR 163 (213)
Q Consensus 126 ~~~i~~al~~i~d~~~~PVLVHC~~Gk~RTG~vva~yl 163 (213)
.+.++..+..-.=..+.||++-|..|..-.-..++++|
T Consensus 221 ~edl~~~f~~~~l~~~~p~~~sC~~Gisa~~i~~al~r 258 (286)
T KOG1529|consen 221 AEDLKHLFAQKGLKLSKPVIVSCGTGISASIIALALER 258 (286)
T ss_pred HHHHHHHHHhcCcccCCCEEEeeccchhHHHHHHHHHh
Confidence 45566555443213579999999998744444444443
No 164
>COG2442 Uncharacterized conserved protein [Function unknown]
Probab=36.97 E-value=29 Score=24.90 Aligned_cols=35 Identities=14% Similarity=0.191 Sum_probs=22.6
Q ss_pred cCCCCChHHHHHHHHHHHCCCCHHHHHHHHHhHhcc
Q 028110 148 CKRGKHRTGCLVGCLRKLQKWCLSSVFDEYQRFAAA 183 (213)
Q Consensus 148 C~~Gk~RTG~vva~yl~~~gws~e~al~ey~~~~~~ 183 (213)
|-.|. |..+-..+.+.-.|++.++++++|-.....
T Consensus 25 ~I~Gt-RI~V~~Il~~l~~G~s~eeil~dyp~Lt~~ 59 (79)
T COG2442 25 CIRGT-RIPVWDILEMLAAGESIEEILADYPDLTLE 59 (79)
T ss_pred eEeCc-eecHHHHHHHHHCCCCHHHHHHhCCCCCHH
Confidence 44454 554444444445899999999999854433
No 165
>PRK08628 short chain dehydrogenase; Provisional
Probab=36.92 E-value=1.9e+02 Score=23.78 Aligned_cols=69 Identities=12% Similarity=-0.021 Sum_probs=37.7
Q ss_pred HHHHHhcCCcEEEEcCCCCCCCchHhHhhhCCceEEEeeecCCCCCCCCCCHHHHHHHHHHHHhcC-CCcEEEEcCCC
Q 028110 75 FSFLQTLRLRSIIYLCPEPYPEANTEFLKSNGIKLFQFAIEGHKEPFVNIPEDMIREALKVLLDVR-NHPVLIHCKRG 151 (213)
Q Consensus 75 ~~~L~~lGIktVI~Lr~e~~~~~~~~~~~~~Gi~~~~ipi~d~~~p~~~i~~~~i~~al~~i~d~~-~~PVLVHC~~G 151 (213)
...|.+.|.+.|+.-|+++.. ...+.+...|-+...++++-. ..+.+.++++.+.+.. .--++|||.+.
T Consensus 24 a~~l~~~G~~v~~~~r~~~~~-~~~~~~~~~~~~~~~~~~D~~-------~~~~~~~~~~~~~~~~~~id~vi~~ag~ 93 (258)
T PRK08628 24 SLRLAEEGAIPVIFGRSAPDD-EFAEELRALQPRAEFVQVDLT-------DDAQCRDAVEQTVAKFGRIDGLVNNAGV 93 (258)
T ss_pred HHHHHHcCCcEEEEcCChhhH-HHHHHHHhcCCceEEEEccCC-------CHHHHHHHHHHHHHhcCCCCEEEECCcc
Confidence 357778899877766654321 222222333433333333221 1456777777776533 23599999853
No 166
>PRK07814 short chain dehydrogenase; Provisional
Probab=36.79 E-value=1.1e+02 Score=25.62 Aligned_cols=69 Identities=9% Similarity=0.042 Sum_probs=35.7
Q ss_pred HHHHhcCCcEEEEcCCCCCCCchHhHhhhCCceEEEeeecCCCCCCCCCCHHHHHHHHHHHHhcC-CCcEEEEcCCC
Q 028110 76 SFLQTLRLRSIIYLCPEPYPEANTEFLKSNGIKLFQFAIEGHKEPFVNIPEDMIREALKVLLDVR-NHPVLIHCKRG 151 (213)
Q Consensus 76 ~~L~~lGIktVI~Lr~e~~~~~~~~~~~~~Gi~~~~ipi~d~~~p~~~i~~~~i~~al~~i~d~~-~~PVLVHC~~G 151 (213)
..|.+.|.+.|+--|..+..+...+.+...|.+...+.++-. ..+.+.++++.+.+.- .--++|||.+.
T Consensus 28 ~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~-------~~~~~~~~~~~~~~~~~~id~vi~~Ag~ 97 (263)
T PRK07814 28 LAFAEAGADVLIAARTESQLDEVAEQIRAAGRRAHVVAADLA-------HPEATAGLAGQAVEAFGRLDIVVNNVGG 97 (263)
T ss_pred HHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCC-------CHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 567778996655555432111112222223333333333322 2467777887776532 33599999753
No 167
>PRK08643 acetoin reductase; Validated
Probab=36.79 E-value=1.5e+02 Score=24.49 Aligned_cols=69 Identities=16% Similarity=0.126 Sum_probs=35.7
Q ss_pred HHHHhcCCcEEEEcCCCCCCCchHhHhhhCCceEEEeeecCCCCCCCCCCHHHHHHHHHHHHhcC-CCcEEEEcCCC
Q 028110 76 SFLQTLRLRSIIYLCPEPYPEANTEFLKSNGIKLFQFAIEGHKEPFVNIPEDMIREALKVLLDVR-NHPVLIHCKRG 151 (213)
Q Consensus 76 ~~L~~lGIktVI~Lr~e~~~~~~~~~~~~~Gi~~~~ipi~d~~~p~~~i~~~~i~~al~~i~d~~-~~PVLVHC~~G 151 (213)
..|.+.|.+.|+--|..+........+...|-+...+.++-. ..+.+.++++.+.+.- +--++|||.+.
T Consensus 20 ~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~-------~~~~~~~~~~~~~~~~~~id~vi~~ag~ 89 (256)
T PRK08643 20 KRLVEDGFKVAIVDYNEETAQAAADKLSKDGGKAIAVKADVS-------DRDQVFAAVRQVVDTFGDLNVVVNNAGV 89 (256)
T ss_pred HHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCC-------CHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 567778987665545432111122222333433333332221 2456777887776532 33589999854
No 168
>PRK07478 short chain dehydrogenase; Provisional
Probab=36.72 E-value=1.4e+02 Score=24.69 Aligned_cols=70 Identities=4% Similarity=0.003 Sum_probs=37.8
Q ss_pred HHHHHhcCCcEEEEcCCCCCCCchHhHhhhCCceEEEeeecCCCCCCCCCCHHHHHHHHHHHHhcCC-CcEEEEcCCC
Q 028110 75 FSFLQTLRLRSIIYLCPEPYPEANTEFLKSNGIKLFQFAIEGHKEPFVNIPEDMIREALKVLLDVRN-HPVLIHCKRG 151 (213)
Q Consensus 75 ~~~L~~lGIktVI~Lr~e~~~~~~~~~~~~~Gi~~~~ipi~d~~~p~~~i~~~~i~~al~~i~d~~~-~PVLVHC~~G 151 (213)
...|.+.|.+.|+--|.++..+...+.++..|.+...++++-. +.+.+.++++.+.+.-+ --++|||.+.
T Consensus 23 a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~-------~~~~~~~~~~~~~~~~~~id~li~~ag~ 93 (254)
T PRK07478 23 AKLFAREGAKVVVGARRQAELDQLVAEIRAEGGEAVALAGDVR-------DEAYAKALVALAVERFGGLDIAFNNAGT 93 (254)
T ss_pred HHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCC-------CHHHHHHHHHHHHHhcCCCCEEEECCCC
Confidence 3567788987665544432111122223334544444444332 24677778877765322 3489999764
No 169
>KOG0025 consensus Zn2+-binding dehydrogenase (nuclear receptor binding factor-1) [Transcription; Energy production and conversion]
Probab=36.71 E-value=1.4e+02 Score=27.16 Aligned_cols=20 Identities=10% Similarity=0.311 Sum_probs=15.8
Q ss_pred CcEEEEcCCCCChHHHHHHHHH
Q 028110 142 HPVLIHCKRGKHRTGCLVGCLR 163 (213)
Q Consensus 142 ~PVLVHC~~Gk~RTG~vva~yl 163 (213)
-.+-+-|-+| |+.+.++.||
T Consensus 234 prLalNcVGG--ksa~~iar~L 253 (354)
T KOG0025|consen 234 PRLALNCVGG--KSATEIARYL 253 (354)
T ss_pred ceEEEeccCc--hhHHHHHHHH
Confidence 3488999998 6777778887
No 170
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=36.51 E-value=1.5e+02 Score=24.45 Aligned_cols=69 Identities=10% Similarity=0.050 Sum_probs=37.2
Q ss_pred HHHHhcCCcEEEEcCCCCCCCchHhHhhhCCceEEEeeecCCCCCCCCCCHHHHHHHHHHHHhcCC-CcEEEEcCCC
Q 028110 76 SFLQTLRLRSIIYLCPEPYPEANTEFLKSNGIKLFQFAIEGHKEPFVNIPEDMIREALKVLLDVRN-HPVLIHCKRG 151 (213)
Q Consensus 76 ~~L~~lGIktVI~Lr~e~~~~~~~~~~~~~Gi~~~~ipi~d~~~p~~~i~~~~i~~al~~i~d~~~-~PVLVHC~~G 151 (213)
..|.+.|.+.|+--+..+........++..|.+...++++-. ..+.+.++++.+.+.-+ --++|||.+.
T Consensus 29 ~~l~~~G~~vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~-------~~~~i~~~~~~~~~~~~~~d~li~~ag~ 98 (255)
T PRK06113 29 ITFATAGASVVVSDINADAANHVVDEIQQLGGQAFACRCDIT-------SEQELSALADFALSKLGKVDILVNNAGG 98 (255)
T ss_pred HHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCC-------CHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 567788988766544432111122222334444444443221 24677778777765333 3599999875
No 171
>TIGR02415 23BDH acetoin reductases. One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).
Probab=36.07 E-value=1.6e+02 Score=24.12 Aligned_cols=69 Identities=10% Similarity=0.064 Sum_probs=36.7
Q ss_pred HHHHhcCCcEEEEcCCCCCCCchHhHhhhCCceEEEeeecCCCCCCCCCCHHHHHHHHHHHHhcC-CCcEEEEcCCC
Q 028110 76 SFLQTLRLRSIIYLCPEPYPEANTEFLKSNGIKLFQFAIEGHKEPFVNIPEDMIREALKVLLDVR-NHPVLIHCKRG 151 (213)
Q Consensus 76 ~~L~~lGIktVI~Lr~e~~~~~~~~~~~~~Gi~~~~ipi~d~~~p~~~i~~~~i~~al~~i~d~~-~~PVLVHC~~G 151 (213)
..|.+.|.+.|+--+...........+...|.+..-+.++-. ..+.+.++++.+.+.. .--++|||.+.
T Consensus 18 ~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~-------~~~~i~~~~~~~~~~~~~id~vi~~ag~ 87 (254)
T TIGR02415 18 ERLAKDGFAVAVADLNEETAKETAKEINQAGGKAVAYKLDVS-------DKDQVFSAIDQAAEKFGGFDVMVNNAGV 87 (254)
T ss_pred HHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCC-------CHHHHHHHHHHHHHHcCCCCEEEECCCc
Confidence 467788987555444421111122223344544443433322 2467777887776532 33599999864
No 172
>COG0276 HemH Protoheme ferro-lyase (ferrochelatase) [Coenzyme metabolism]
Probab=35.95 E-value=97 Score=28.12 Aligned_cols=44 Identities=14% Similarity=0.067 Sum_probs=31.1
Q ss_pred cHHHHHhcCCcEEEEcCCCC----------CCCchHhHhhhCC-ceEEEeeecCC
Q 028110 74 NFSFLQTLRLRSIIYLCPEP----------YPEANTEFLKSNG-IKLFQFAIEGH 117 (213)
Q Consensus 74 ~~~~L~~lGIktVI~Lr~e~----------~~~~~~~~~~~~G-i~~~~ipi~d~ 117 (213)
-++.|.+.|+|.||-.+..- ......+.+.+.| ..|.++|+...
T Consensus 248 ~l~~L~~~g~k~iiv~pigFvsDhlETL~Eid~e~~e~~~~~Gg~~y~rip~lN~ 302 (320)
T COG0276 248 LLEELGEKGVKKIIVVPIGFVSDHLETLYEIDHEYRELAEEAGGKKYVRIPCLND 302 (320)
T ss_pred HHHHHHhcCCCeEEEECCchhhhhHHHHHHHHHHHHHHHHHhCCccEEecCCCCC
Confidence 45777788999999888641 1123455566677 99999998775
No 173
>TIGR03586 PseI pseudaminic acid synthase.
Probab=35.68 E-value=3.1e+02 Score=24.86 Aligned_cols=27 Identities=22% Similarity=0.367 Sum_probs=17.5
Q ss_pred CHHHHHHHHHHHHhcCC-CcEEEEcCCC
Q 028110 125 PEDMIREALKVLLDVRN-HPVLIHCKRG 151 (213)
Q Consensus 125 ~~~~i~~al~~i~d~~~-~PVLVHC~~G 151 (213)
+.+.+..+++.+.+..+ .-+|.||..+
T Consensus 145 t~~Ei~~Av~~i~~~g~~~i~LlhC~s~ 172 (327)
T TIGR03586 145 TLEEIQEAVEACREAGCKDLVLLKCTSS 172 (327)
T ss_pred CHHHHHHHHHHHHHCCCCcEEEEecCCC
Confidence 35667777777765333 3478888776
No 174
>PLN02790 transketolase
Probab=35.64 E-value=67 Score=31.76 Aligned_cols=51 Identities=20% Similarity=0.164 Sum_probs=34.0
Q ss_pred chHhHhhhCCceEEEeeecCCCCCCCCCCHHHHHHHHHHHHhcCCCcEEEEcCCCCCh
Q 028110 97 ANTEFLKSNGIKLFQFAIEGHKEPFVNIPEDMIREALKVLLDVRNHPVLIHCKRGKHR 154 (213)
Q Consensus 97 ~~~~~~~~~Gi~~~~ipi~d~~~p~~~i~~~~i~~al~~i~d~~~~PVLVHC~~Gk~R 154 (213)
...+.++..|+.++.+ .+... +.+.+.++++...+..++|++|||..-+++
T Consensus 191 ~~~~~f~a~G~~~~~v--dgg~h-----d~~~l~~a~~~a~~~~~~P~lI~~~T~kG~ 241 (654)
T PLN02790 191 DVDKRYEALGWHTIWV--KNGNT-----DYDEIRAAIKEAKAVTDKPTLIKVTTTIGY 241 (654)
T ss_pred hHHHHHHHcCCeEEEE--CCCCC-----CHHHHHHHHHHHHhcCCCeEEEEEEEeecC
Confidence 3455677889888863 33101 246788888876653578999999875544
No 175
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=35.25 E-value=1.4e+02 Score=24.68 Aligned_cols=69 Identities=16% Similarity=0.118 Sum_probs=35.5
Q ss_pred HHHHhcCCcEEEEcCCCCCCCchHhHhhhCCceEEEeeecCCCCCCCCCCHHHHHHHHHHHHhc-CCCcEEEEcCCC
Q 028110 76 SFLQTLRLRSIIYLCPEPYPEANTEFLKSNGIKLFQFAIEGHKEPFVNIPEDMIREALKVLLDV-RNHPVLIHCKRG 151 (213)
Q Consensus 76 ~~L~~lGIktVI~Lr~e~~~~~~~~~~~~~Gi~~~~ipi~d~~~p~~~i~~~~i~~al~~i~d~-~~~PVLVHC~~G 151 (213)
..|.+.|.+.++--|..+..+.....+...+.+...++++-. +.+.+.++++.+.+. .+--++|||.+.
T Consensus 30 ~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~~Dl~-------d~~~i~~~~~~~~~~~~~id~vi~~ag~ 99 (259)
T PRK08213 30 EALGEAGARVVLSARKAEELEEAAAHLEALGIDALWIAADVA-------DEADIERLAEETLERFGHVDILVNNAGA 99 (259)
T ss_pred HHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEccCC-------CHHHHHHHHHHHHHHhCCCCEEEECCCC
Confidence 466678987555444321111112222334444333333332 246777777777653 233599999764
No 176
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=35.22 E-value=1.6e+02 Score=23.99 Aligned_cols=69 Identities=16% Similarity=0.138 Sum_probs=35.9
Q ss_pred HHHHhcCCcEEEEcCCCCCCCchHhHhhhCCceEEEeeecCCCCCCCCCCHHHHHHHHHHHHhc-CCCcEEEEcCCC
Q 028110 76 SFLQTLRLRSIIYLCPEPYPEANTEFLKSNGIKLFQFAIEGHKEPFVNIPEDMIREALKVLLDV-RNHPVLIHCKRG 151 (213)
Q Consensus 76 ~~L~~lGIktVI~Lr~e~~~~~~~~~~~~~Gi~~~~ipi~d~~~p~~~i~~~~i~~al~~i~d~-~~~PVLVHC~~G 151 (213)
..|.+.|.+.++--|...........++..+.+...+..+-. ..+.+.++++.+.+. .+--++|||.+.
T Consensus 22 ~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~-------~~~~~~~~~~~~~~~~~~~d~vi~~a~~ 91 (258)
T PRK12429 22 LALAKEGAKVVIADLNDEAAAAAAEALQKAGGKAIGVAMDVT-------DEEAINAGIDYAVETFGGVDILVNNAGI 91 (258)
T ss_pred HHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCC-------CHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 466677987655444432111112223334544444443321 246777777777653 233589999864
No 177
>PF02775 TPP_enzyme_C: Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; InterPro: IPR011766 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the C-terminal TPP binding domain of TPP enzymes.; GO: 0003824 catalytic activity, 0030976 thiamine pyrophosphate binding; PDB: 2WVA_V 1ZPD_F 2WVG_B 2WVH_B 3OE1_D 2NXW_A 2Q5L_B 2Q5Q_B 2Q5J_A 2Q5O_A ....
Probab=34.50 E-value=1.2e+02 Score=23.38 Aligned_cols=42 Identities=21% Similarity=0.282 Sum_probs=29.8
Q ss_pred chHhHhhhCCceEEEeeecCCCCCCCCCCHHHHHHHHHHHHhcCCCcEEEEc
Q 028110 97 ANTEFLKSNGIKLFQFAIEGHKEPFVNIPEDMIREALKVLLDVRNHPVLIHC 148 (213)
Q Consensus 97 ~~~~~~~~~Gi~~~~ipi~d~~~p~~~i~~~~i~~al~~i~d~~~~PVLVHC 148 (213)
+....++..|++...+ ... +.+++.++++..++ .++|.+|++
T Consensus 112 d~~~~a~a~G~~~~~v--~~~-------~~~el~~al~~a~~-~~gp~vIeV 153 (153)
T PF02775_consen 112 DFAALAEAFGIKGARV--TTP-------DPEELEEALREALE-SGGPAVIEV 153 (153)
T ss_dssp GHHHHHHHTTSEEEEE--SCH-------SHHHHHHHHHHHHH-SSSEEEEEE
T ss_pred CHHHHHHHcCCcEEEE--ccC-------CHHHHHHHHHHHHh-CCCcEEEEc
Confidence 4566778889986644 221 23678888888774 789999985
No 178
>COG2897 SseA Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=34.07 E-value=96 Score=27.59 Aligned_cols=29 Identities=21% Similarity=0.233 Sum_probs=17.6
Q ss_pred cCCCcEEEEcCCCCChHHHHHHHHHHHCCC
Q 028110 139 VRNHPVLIHCKRGKHRTGCLVGCLRKLQKW 168 (213)
Q Consensus 139 ~~~~PVLVHC~~Gk~RTG~vva~yl~~~gw 168 (213)
....+|+++|..|. |+.....++..+.+.
T Consensus 232 ~~~~~vI~yCgsG~-~As~~~~al~~lg~~ 260 (285)
T COG2897 232 DPDKEVIVYCGSGV-RASVTWLALAELGGP 260 (285)
T ss_pred CCCCCEEEEcCCch-HHHHHHHHHHHhCCC
Confidence 36789999998885 444443433333333
No 179
>PRK07411 hypothetical protein; Validated
Probab=34.06 E-value=48 Score=30.53 Aligned_cols=28 Identities=25% Similarity=0.318 Sum_probs=20.3
Q ss_pred CCCcEEEEcCCCCChHHHHHHHHHHHCCCC
Q 028110 140 RNHPVLIHCKRGKHRTGCLVGCLRKLQKWC 169 (213)
Q Consensus 140 ~~~PVLVHC~~Gk~RTG~vva~yl~~~gws 169 (213)
++.+|+|||..|. |+.. ++.+|..+|++
T Consensus 341 ~d~~IVvyC~~G~-RS~~-aa~~L~~~G~~ 368 (390)
T PRK07411 341 NGHRLIAHCKMGG-RSAK-ALGILKEAGIE 368 (390)
T ss_pred CCCeEEEECCCCH-HHHH-HHHHHHHcCCC
Confidence 4679999999886 8755 45555566764
No 180
>PF14555 UBA_4: UBA-like domain; PDB: 2DAL_A 3BQ3_A 2L4E_A 2L4F_A 2DZL_A 2L2D_A 2DAM_A 1V92_A 3E21_A.
Probab=34.04 E-value=61 Score=19.99 Aligned_cols=23 Identities=13% Similarity=0.215 Sum_probs=18.5
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHh
Q 028110 157 CLVGCLRKLQKWCLSSVFDEYQR 179 (213)
Q Consensus 157 ~vva~yl~~~gws~e~al~ey~~ 179 (213)
-.+.-||...+|+++.|++.|-.
T Consensus 16 ~~A~~~L~~~~wdle~Av~~y~~ 38 (43)
T PF14555_consen 16 DVAIQYLEANNWDLEAAVNAYFD 38 (43)
T ss_dssp HHHHHHHHHTTT-HHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHh
Confidence 56778888899999999998865
No 181
>PRK08936 glucose-1-dehydrogenase; Provisional
Probab=33.90 E-value=1.9e+02 Score=23.91 Aligned_cols=69 Identities=10% Similarity=0.032 Sum_probs=38.4
Q ss_pred HHHHhcCCcEEEEcCCCCC-CCchHhHhhhCCceEEEeeecCCCCCCCCCCHHHHHHHHHHHHhcCCC-cEEEEcCCC
Q 028110 76 SFLQTLRLRSIIYLCPEPY-PEANTEFLKSNGIKLFQFAIEGHKEPFVNIPEDMIREALKVLLDVRNH-PVLIHCKRG 151 (213)
Q Consensus 76 ~~L~~lGIktVI~Lr~e~~-~~~~~~~~~~~Gi~~~~ipi~d~~~p~~~i~~~~i~~al~~i~d~~~~-PVLVHC~~G 151 (213)
..|.+.|.+.|+..+.... .....+.++..|-+..-++++-. +.+.+.++++.+.+.-+. -++|||.+.
T Consensus 25 ~~l~~~G~~vvi~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dl~-------~~~~i~~~~~~~~~~~g~id~lv~~ag~ 95 (261)
T PRK08936 25 VRFGKEKAKVVINYRSDEEEANDVAEEIKKAGGEAIAVKGDVT-------VESDVVNLIQTAVKEFGTLDVMINNAGI 95 (261)
T ss_pred HHHHHCCCEEEEEeCCCHHHHHHHHHHHHHcCCeEEEEEecCC-------CHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 5677889988887665421 11122223334544443443322 245677777777653333 389999764
No 182
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=33.64 E-value=3.2e+02 Score=26.36 Aligned_cols=82 Identities=13% Similarity=0.168 Sum_probs=45.4
Q ss_pred HHHHHhcCCcEEEEc--CCCCCC--C---chHhHhhhCCceEEEeeecCCCCCCCCCCHHHHHHHHHHHHhcC--CCcEE
Q 028110 75 FSFLQTLRLRSIIYL--CPEPYP--E---ANTEFLKSNGIKLFQFAIEGHKEPFVNIPEDMIREALKVLLDVR--NHPVL 145 (213)
Q Consensus 75 ~~~L~~lGIktVI~L--r~e~~~--~---~~~~~~~~~Gi~~~~ipi~d~~~p~~~i~~~~i~~al~~i~d~~--~~PVL 145 (213)
+..++..|......+ +..+.. + ...+.+.+.|+..+.| .|... -+.+..+.+.++.|.+.- +-||-
T Consensus 130 i~~vk~ag~~~~~~i~yt~sp~~t~e~~~~~a~~l~~~Gad~I~I--kDtaG---ll~P~~~~~LV~~Lk~~~~~~ipI~ 204 (499)
T PRK12330 130 MKAVKKVGKHAQGTICYTVSPIHTVEGFVEQAKRLLDMGADSICI--KDMAA---LLKPQPAYDIVKGIKEACGEDTRIN 204 (499)
T ss_pred HHHHHHhCCeEEEEEEEecCCCCCHHHHHHHHHHHHHcCCCEEEe--CCCcc---CCCHHHHHHHHHHHHHhCCCCCeEE
Confidence 346666776553333 222111 1 2233345678866644 44211 234677888888887643 57899
Q ss_pred EEcCCCCChHHHHHHHHHH
Q 028110 146 IHCKRGKHRTGCLVGCLRK 164 (213)
Q Consensus 146 VHC~~Gk~RTG~vva~yl~ 164 (213)
+||+. ..|+.+|-++.
T Consensus 205 ~H~Hn---t~GlA~An~la 220 (499)
T PRK12330 205 LHCHS---TTGVTLVSLMK 220 (499)
T ss_pred EEeCC---CCCcHHHHHHH
Confidence 99975 34555555553
No 183
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=33.60 E-value=2.5e+02 Score=23.25 Aligned_cols=67 Identities=12% Similarity=0.009 Sum_probs=38.1
Q ss_pred HHHHhcCCcEEEEcCCCCCCCchHhHhhhCCceEEEeeecCCCCCCCCCCHHHHHHHHHHHHhcC-CCcEEEEcCCC
Q 028110 76 SFLQTLRLRSIIYLCPEPYPEANTEFLKSNGIKLFQFAIEGHKEPFVNIPEDMIREALKVLLDVR-NHPVLIHCKRG 151 (213)
Q Consensus 76 ~~L~~lGIktVI~Lr~e~~~~~~~~~~~~~Gi~~~~ipi~d~~~p~~~i~~~~i~~al~~i~d~~-~~PVLVHC~~G 151 (213)
..|.+.|.+.|+.-+.+. +...+.++..|-+...+.++-. ..+.+.++++.+.+.- .--++|||.+.
T Consensus 26 ~~l~~~G~~vv~~~~~~~--~~~~~~~~~~~~~~~~~~~Dl~-------~~~~~~~~~~~~~~~~g~iD~lv~~ag~ 93 (251)
T PRK12481 26 IGLAKAGADIVGVGVAEA--PETQAQVEALGRKFHFITADLI-------QQKDIDSIVSQAVEVMGHIDILINNAGI 93 (251)
T ss_pred HHHHHCCCEEEEecCchH--HHHHHHHHHcCCeEEEEEeCCC-------CHHHHHHHHHHHHHHcCCCCEEEECCCc
Confidence 567788998776544321 1222333444545444444332 2467888888776532 23599999754
No 184
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=33.51 E-value=1.7e+02 Score=23.81 Aligned_cols=70 Identities=14% Similarity=0.066 Sum_probs=36.8
Q ss_pred HHHHhcCCcEEEEcCCCCCCCchHhHhhhCCceEEEeeecCCCCCCCCCCHHHHHHHHHHHHhcC-CCcEEEEcCCCC
Q 028110 76 SFLQTLRLRSIIYLCPEPYPEANTEFLKSNGIKLFQFAIEGHKEPFVNIPEDMIREALKVLLDVR-NHPVLIHCKRGK 152 (213)
Q Consensus 76 ~~L~~lGIktVI~Lr~e~~~~~~~~~~~~~Gi~~~~ipi~d~~~p~~~i~~~~i~~al~~i~d~~-~~PVLVHC~~Gk 152 (213)
..|.+.|.+-|+--|...........+...+-+...+..+-. ..+.+.++++.+.+.. +--++|||.+..
T Consensus 25 ~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~-------~~~~~~~~~~~~~~~~~~id~vi~~ag~~ 95 (239)
T PRK07666 25 IALAKEGVNVGLLARTEENLKAVAEEVEAYGVKVVIATADVS-------DYEEVTAAIEQLKNELGSIDILINNAGIS 95 (239)
T ss_pred HHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCeEEEEECCCC-------CHHHHHHHHHHHHHHcCCccEEEEcCccc
Confidence 467788986555445432111112222334444444443332 2467777887776532 335999997653
No 185
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=33.08 E-value=2.9e+02 Score=26.34 Aligned_cols=81 Identities=15% Similarity=0.055 Sum_probs=45.4
Q ss_pred HHHHHhcCCcEEEEcCC--CCC-C-C---chHhHhhhCCceEEEeeecCCCCCCCCCCHHHHHHHHHHHHhcCCCcEEEE
Q 028110 75 FSFLQTLRLRSIIYLCP--EPY-P-E---ANTEFLKSNGIKLFQFAIEGHKEPFVNIPEDMIREALKVLLDVRNHPVLIH 147 (213)
Q Consensus 75 ~~~L~~lGIktVI~Lr~--e~~-~-~---~~~~~~~~~Gi~~~~ipi~d~~~p~~~i~~~~i~~al~~i~d~~~~PVLVH 147 (213)
++..++.|.....+++- .+. + + ...+.+.+.|+..+.| .|... -+.+..+.+.++.+.+.-+-||-+|
T Consensus 128 i~~ak~~G~~v~~~i~~t~~p~~t~e~~~~~a~~l~~~Gad~I~i--~Dt~G---~l~P~~v~~Lv~~lk~~~~vpI~~H 202 (467)
T PRK14041 128 IEVAKKHGAHVQGAISYTVSPVHTLEYYLEFARELVDMGVDSICI--KDMAG---LLTPKRAYELVKALKKKFGVPVEVH 202 (467)
T ss_pred HHHHHHCCCEEEEEEEeccCCCCCHHHHHHHHHHHHHcCCCEEEE--CCccC---CcCHHHHHHHHHHHHHhcCCceEEE
Confidence 34666778766645532 111 1 1 2233345678876544 34211 2346778888888876556899999
Q ss_pred cCCCCChHHHHHHHHH
Q 028110 148 CKRGKHRTGCLVGCLR 163 (213)
Q Consensus 148 C~~Gk~RTG~vva~yl 163 (213)
|+.- .|+-+|-++
T Consensus 203 ~Hnt---~GlA~AN~l 215 (467)
T PRK14041 203 SHCT---TGLASLAYL 215 (467)
T ss_pred ecCC---CCcHHHHHH
Confidence 8753 344444444
No 186
>PRK07454 short chain dehydrogenase; Provisional
Probab=32.98 E-value=1.5e+02 Score=24.06 Aligned_cols=70 Identities=19% Similarity=0.125 Sum_probs=34.9
Q ss_pred HHHHHhcCCcEEEEcCCCCCCCchHhHhhhCCceEEEeeecCCCCCCCCCCHHHHHHHHHHHHhcCC-CcEEEEcCCC
Q 028110 75 FSFLQTLRLRSIIYLCPEPYPEANTEFLKSNGIKLFQFAIEGHKEPFVNIPEDMIREALKVLLDVRN-HPVLIHCKRG 151 (213)
Q Consensus 75 ~~~L~~lGIktVI~Lr~e~~~~~~~~~~~~~Gi~~~~ipi~d~~~p~~~i~~~~i~~al~~i~d~~~-~PVLVHC~~G 151 (213)
...|.+.|.+.++--|+.+......+.++..+-+...+.++-. +.+.+.++++.+.+..+ --++|||.+.
T Consensus 23 a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~-------~~~~~~~~~~~~~~~~~~id~lv~~ag~ 93 (241)
T PRK07454 23 ALAFAKAGWDLALVARSQDALEALAAELRSTGVKAAAYSIDLS-------NPEAIAPGIAELLEQFGCPDVLINNAGM 93 (241)
T ss_pred HHHHHHCCCEEEEEeCCHHHHHHHHHHHHhCCCcEEEEEccCC-------CHHHHHHHHHHHHHHcCCCCEEEECCCc
Confidence 3566778886555444432111122223333333333333221 24577778877765322 3499999753
No 187
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=32.95 E-value=98 Score=25.90 Aligned_cols=37 Identities=16% Similarity=0.221 Sum_probs=27.5
Q ss_pred HHHHHHHHHHhcCC---CcEEEEcCCCCChHHHHHHHHHH
Q 028110 128 MIREALKVLLDVRN---HPVLIHCKRGKHRTGCLVGCLRK 164 (213)
Q Consensus 128 ~i~~al~~i~d~~~---~PVLVHC~~Gk~RTG~vva~yl~ 164 (213)
....+.+.+.+..+ .|+++|...|.|.|-++-|+...
T Consensus 18 ~a~~~~~~ia~~~~~~~~~l~l~G~~G~GKTHLL~Ai~~~ 57 (219)
T PF00308_consen 18 LAYAAAKAIAENPGERYNPLFLYGPSGLGKTHLLQAIANE 57 (219)
T ss_dssp HHHHHHHHHHHSTTTSSSEEEEEESTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCCCceEEECCCCCCHHHHHHHHHHH
Confidence 34445555655332 48999999999999999998764
No 188
>smart00400 ZnF_CHCC zinc finger.
Probab=32.69 E-value=49 Score=21.47 Aligned_cols=31 Identities=19% Similarity=0.351 Sum_probs=26.1
Q ss_pred EEEcCCCCChHHHHHHHHHHHCCCCHHHHHHH
Q 028110 145 LIHCKRGKHRTGCLVGCLRKLQKWCLSSVFDE 176 (213)
Q Consensus 145 LVHC~~Gk~RTG~vva~yl~~~gws~e~al~e 176 (213)
.+||.+. ++.|-++.++..+.|.+..+|++.
T Consensus 23 ~~~Cf~c-g~gGd~i~fv~~~~~~sf~eA~~~ 53 (55)
T smart00400 23 FFHCFGC-GAGGNVISFLMKYDKLSFVEAVKK 53 (55)
T ss_pred EEEEeCC-CCCCCHHHHHHHHHCcCHHHHHHH
Confidence 5889864 588899999999999999998864
No 189
>PRK12935 acetoacetyl-CoA reductase; Provisional
Probab=32.58 E-value=2.2e+02 Score=23.24 Aligned_cols=69 Identities=9% Similarity=0.030 Sum_probs=37.0
Q ss_pred HHHHhcCCcEEEEcCCCCC-CCchHhHhhhCCceEEEeeecCCCCCCCCCCHHHHHHHHHHHHhcCC-CcEEEEcCCC
Q 028110 76 SFLQTLRLRSIIYLCPEPY-PEANTEFLKSNGIKLFQFAIEGHKEPFVNIPEDMIREALKVLLDVRN-HPVLIHCKRG 151 (213)
Q Consensus 76 ~~L~~lGIktVI~Lr~e~~-~~~~~~~~~~~Gi~~~~ipi~d~~~p~~~i~~~~i~~al~~i~d~~~-~PVLVHC~~G 151 (213)
..|.+.|.+.++..+..+. .+...+.++..|.+..-++++-. ..+.+.++++.+.+.-+ --++|||.+.
T Consensus 24 ~~l~~~g~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~D~~-------~~~~~~~~~~~~~~~~~~id~vi~~ag~ 94 (247)
T PRK12935 24 VALAQEGAKVVINYNSSKEAAENLVNELGKEGHDVYAVQADVS-------KVEDANRLVEEAVNHFGKVDILVNNAGI 94 (247)
T ss_pred HHHHHcCCEEEEEcCCcHHHHHHHHHHHHhcCCeEEEEECCCC-------CHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 5677789887765443211 11122223344544444443332 24577778877765322 3499999755
No 190
>cd07995 TPK Thiamine pyrophosphokinase. Thiamine pyrophosphokinase (TPK, EC:2.7.6.2, also spelled thiamin pyrophosphokinase) catalyzes the transfer of a pyrophosphate group from ATP to vitamin B1 (thiamine) to form the coenzyme thiamine pyrophosphate (TPP). TPP is required for central metabolic functions, and thiamine deficiency is associated with potentially fatal human diseases. The structure of thiamine pyrophosphokinase suggests that the enzyme may operate by a mechanism of pyrophosphoryl transfer similar to those described for pyrophosphokinases functioning in nucleotide biosynthesis.
Probab=32.46 E-value=1.7e+02 Score=24.27 Aligned_cols=73 Identities=19% Similarity=0.297 Sum_probs=48.7
Q ss_pred cHHHHHhcCCcEEEEcCC-CCCCCchHhHhhhCCceEEEeee-cCCCCCCCCCCHHHHHHHHHHHHhcCCCcEEEEcCCC
Q 028110 74 NFSFLQTLRLRSIIYLCP-EPYPEANTEFLKSNGIKLFQFAI-EGHKEPFVNIPEDMIREALKVLLDVRNHPVLIHCKRG 151 (213)
Q Consensus 74 ~~~~L~~lGIktVI~Lr~-e~~~~~~~~~~~~~Gi~~~~ipi-~d~~~p~~~i~~~~i~~al~~i~d~~~~PVLVHC~~G 151 (213)
....|.++|++--+-+-- +...+...+++++.|+..+++|- .|. .++..+++.+.+....+|+|.+..|
T Consensus 31 Ga~~l~~~gi~Pd~iiGDfDSi~~~~~~~~~~~~~~~~~~p~~KD~---------TD~e~Al~~~~~~~~~~i~i~Ga~G 101 (208)
T cd07995 31 GANHLLDLGIVPDLIIGDFDSISPEVLEYYKSKGVEIIHFPDEKDF---------TDFEKALKLALERGADEIVILGATG 101 (208)
T ss_pred HHHHHHHcCCCCCEEEecCcCCCHHHHHHHHhcCCeEEECCCCCCC---------CHHHHHHHHHHHcCCCEEEEEccCC
Confidence 456777777663333322 12234566777888999999997 332 3466788888775556899999998
Q ss_pred CChHH
Q 028110 152 KHRTG 156 (213)
Q Consensus 152 k~RTG 156 (213)
. |-=
T Consensus 102 g-R~D 105 (208)
T cd07995 102 G-RLD 105 (208)
T ss_pred C-cHH
Confidence 6 765
No 191
>PF10302 DUF2407: DUF2407 ubiquitin-like domain; InterPro: IPR019413 This entry represents a family of proteins of unknown function found in fungi. They contain a characteristic GFDRL sequence motif.
Probab=32.44 E-value=26 Score=26.09 Aligned_cols=11 Identities=36% Similarity=0.830 Sum_probs=9.1
Q ss_pred CcEEEEcCCCC
Q 028110 142 HPVLIHCKRGK 152 (213)
Q Consensus 142 ~PVLVHC~~Gk 152 (213)
..|+|||.-|-
T Consensus 86 ~~~yIhCsIGd 96 (97)
T PF10302_consen 86 PRIYIHCSIGD 96 (97)
T ss_pred CeEEEEEeccC
Confidence 57999999873
No 192
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=31.36 E-value=47 Score=30.09 Aligned_cols=84 Identities=17% Similarity=0.217 Sum_probs=49.0
Q ss_pred eEEcCCCChhcHHHHH----hcCCcEEEEcCCCCCCCchHhHhhhCCceEEEeeecCCCC------------CC----CC
Q 028110 64 IFRSGFPDSANFSFLQ----TLRLRSIIYLCPEPYPEANTEFLKSNGIKLFQFAIEGHKE------------PF----VN 123 (213)
Q Consensus 64 Lyrs~~p~~~~~~~L~----~lGIktVI~Lr~e~~~~~~~~~~~~~Gi~~~~ipi~d~~~------------p~----~~ 123 (213)
+|..-....+++..|. ++||..+-.--. ....+++.+.|+..+.++-.+... |- --
T Consensus 67 ~~~~~~l~~e~~~~L~~~~~~~Gi~~~stpfd----~~svd~l~~~~v~~~KIaS~~~~n~pLL~~~A~~gkPvilStGm 142 (329)
T TIGR03569 67 MLKKLELSEEDHRELKEYCESKGIEFLSTPFD----LESADFLEDLGVPRFKIPSGEITNAPLLKKIARFGKPVILSTGM 142 (329)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCcEEEEeCC----HHHHHHHHhcCCCEEEECcccccCHHHHHHHHhcCCcEEEECCC
Confidence 4444444555555444 557665544332 234566777888888776544321 10 00
Q ss_pred CCHHHHHHHHHHHHhcCCC---cEEEEcCCC
Q 028110 124 IPEDMIREALKVLLDVRNH---PVLIHCKRG 151 (213)
Q Consensus 124 i~~~~i~~al~~i~d~~~~---PVLVHC~~G 151 (213)
-+.+.+..+++.+.+..+. -+|+||.++
T Consensus 143 atl~Ei~~Av~~i~~~G~~~~~i~llhC~s~ 173 (329)
T TIGR03569 143 ATLEEIEAAVGVLRDAGTPDSNITLLHCTTE 173 (329)
T ss_pred CCHHHHHHHHHHHHHcCCCcCcEEEEEECCC
Confidence 1467788999999764332 589999986
No 193
>PRK06128 oxidoreductase; Provisional
Probab=31.34 E-value=2.4e+02 Score=24.12 Aligned_cols=69 Identities=10% Similarity=0.098 Sum_probs=39.4
Q ss_pred HHHHhcCCcEEEEcCCCCCC--CchHhHhhhCCceEEEeeecCCCCCCCCCCHHHHHHHHHHHHhcC-CCcEEEEcCCC
Q 028110 76 SFLQTLRLRSIIYLCPEPYP--EANTEFLKSNGIKLFQFAIEGHKEPFVNIPEDMIREALKVLLDVR-NHPVLIHCKRG 151 (213)
Q Consensus 76 ~~L~~lGIktVI~Lr~e~~~--~~~~~~~~~~Gi~~~~ipi~d~~~p~~~i~~~~i~~al~~i~d~~-~~PVLVHC~~G 151 (213)
..|.+.|.+.|+.-+..... ....+.++..|-+...++++-. +.+.+.++++.+.+.- .--++|||.+.
T Consensus 73 ~~l~~~G~~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~-------~~~~v~~~~~~~~~~~g~iD~lV~nAg~ 144 (300)
T PRK06128 73 IAFAREGADIALNYLPEEEQDAAEVVQLIQAEGRKAVALPGDLK-------DEAFCRQLVERAVKELGGLDILVNIAGK 144 (300)
T ss_pred HHHHHcCCEEEEEeCCcchHHHHHHHHHHHHcCCeEEEEecCCC-------CHHHHHHHHHHHHHHhCCCCEEEECCcc
Confidence 46677899887765543211 1223334455655554444332 2467777777766532 33599999864
No 194
>PRK05866 short chain dehydrogenase; Provisional
Probab=31.25 E-value=1.6e+02 Score=25.36 Aligned_cols=70 Identities=9% Similarity=-0.005 Sum_probs=37.2
Q ss_pred HHHHhcCCcEEEEcCCCCCCCchHhHhhhCCceEEEeeecCCCCCCCCCCHHHHHHHHHHHHhcC-CCcEEEEcCCCC
Q 028110 76 SFLQTLRLRSIIYLCPEPYPEANTEFLKSNGIKLFQFAIEGHKEPFVNIPEDMIREALKVLLDVR-NHPVLIHCKRGK 152 (213)
Q Consensus 76 ~~L~~lGIktVI~Lr~e~~~~~~~~~~~~~Gi~~~~ipi~d~~~p~~~i~~~~i~~al~~i~d~~-~~PVLVHC~~Gk 152 (213)
..|.+.|.+.++.-|..+..+...+.+...|.+...+..+-. ..+.+.++++.+.+.- +--++|||.++.
T Consensus 58 ~~La~~G~~Vi~~~R~~~~l~~~~~~l~~~~~~~~~~~~Dl~-------d~~~v~~~~~~~~~~~g~id~li~~AG~~ 128 (293)
T PRK05866 58 EQFARRGATVVAVARREDLLDAVADRITRAGGDAMAVPCDLS-------DLDAVDALVADVEKRIGGVDILINNAGRS 128 (293)
T ss_pred HHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCC-------CHHHHHHHHHHHHHHcCCCCEEEECCCCC
Confidence 456677987766655532111122222333444333333221 2457777887776532 335999997654
No 195
>PRK12558 glutamyl-tRNA synthetase; Provisional
Probab=31.16 E-value=79 Score=29.94 Aligned_cols=71 Identities=21% Similarity=0.191 Sum_probs=51.1
Q ss_pred CCcEEEEcCCCCC--------hHHHHHHHHHHHCCCCHHHHHHHHHhHhcccC---CchHHHHHHHhcccccccCCCCCC
Q 028110 141 NHPVLIHCKRGKH--------RTGCLVGCLRKLQKWCLSSVFDEYQRFAAAKA---RVSDQRFMELFDISSLKHLPMSFS 209 (213)
Q Consensus 141 ~~PVLVHC~~Gk~--------RTG~vva~yl~~~gws~e~al~ey~~~~~~~~---~~~~~~fie~f~~~~~~~~~~~~~ 209 (213)
..|.+.|+..=.+ |.|.+....+.-+|+..+.+++-..+..+... -...+..|+.|+.+.+.+-|+-|+
T Consensus 223 ~~P~f~H~pli~~~~g~KLSKR~g~~sv~~~r~~G~~Peai~n~la~lG~s~~~~e~~~~~eli~~F~l~~~~~~~~~fd 302 (445)
T PRK12558 223 KPPVFAHLSLLTGADGKGLSKRLGGLSIRSLREDGIEPMAIASLLARLGTSDPVEPYTSMEELAESFDLSSFSRAPAKFD 302 (445)
T ss_pred CCCeEEEcccccCCCcccccccCCCcCHHHHHHCCCCHHHHHHHHHHHcCCCCCcccCCHHHHHHhCCHhhCCCccccCC
Confidence 4688888864332 45555555566789999999887777766532 136688899999999999888876
Q ss_pred cc
Q 028110 210 CL 211 (213)
Q Consensus 210 ~~ 211 (213)
..
T Consensus 303 ~~ 304 (445)
T PRK12558 303 PE 304 (445)
T ss_pred HH
Confidence 43
No 196
>PRK01269 tRNA s(4)U8 sulfurtransferase; Provisional
Probab=31.10 E-value=97 Score=29.38 Aligned_cols=28 Identities=18% Similarity=0.310 Sum_probs=19.6
Q ss_pred CCCcEEEEcCCCCChHHHHHHHHHHHCCCC
Q 028110 140 RNHPVLIHCKRGKHRTGCLVGCLRKLQKWC 169 (213)
Q Consensus 140 ~~~PVLVHC~~Gk~RTG~vva~yl~~~gws 169 (213)
.+.|++++|.+|. |+... +.+|..+|++
T Consensus 448 ~~~~iivyC~~G~-rS~~a-a~~L~~~G~~ 475 (482)
T PRK01269 448 QSKTYLLYCDRGV-MSRLQ-ALYLREQGFS 475 (482)
T ss_pred CCCeEEEECCCCH-HHHHH-HHHHHHcCCc
Confidence 5679999999996 76554 4455556653
No 197
>TIGR01839 PHA_synth_II poly(R)-hydroxyalkanoic acid synthase, class II. This model represents the class II subfamily of poly(R)-hydroxyalkanoate synthases, which polymerizes hydroxyacyl-CoAs, typically with six to fourteen carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of cell.
Probab=30.92 E-value=3.1e+02 Score=26.88 Aligned_cols=65 Identities=18% Similarity=0.294 Sum_probs=38.9
Q ss_pred cEEEEcCCCCCCCchHhHhhhCCceEEEeeecCCCCCCCCCCH----HHHHHHHHHHHhcC-C--CcEEEEcCCC
Q 028110 84 RSIIYLCPEPYPEANTEFLKSNGIKLFQFAIEGHKEPFVNIPE----DMIREALKVLLDVR-N--HPVLIHCKRG 151 (213)
Q Consensus 84 ktVI~Lr~e~~~~~~~~~~~~~Gi~~~~ipi~d~~~p~~~i~~----~~i~~al~~i~d~~-~--~PVLVHC~~G 151 (213)
-.|+||.++. ...+++.+.|++.+-+.....+......+. +.+.++++.+.+.. . -.++=||.+|
T Consensus 228 ~YIlDL~P~~---SlVr~lv~qG~~VflIsW~nP~~~~r~~~ldDYv~~i~~Ald~V~~~tG~~~vnl~GyC~GG 299 (560)
T TIGR01839 228 FYIFDLSPEK---SFVQYCLKNQLQVFIISWRNPDKAHREWGLSTYVDALKEAVDAVRAITGSRDLNLLGACAGG 299 (560)
T ss_pred hheeecCCcc---hHHHHHHHcCCeEEEEeCCCCChhhcCCCHHHHHHHHHHHHHHHHHhcCCCCeeEEEECcch
Confidence 4678888763 577888899999887765432221112222 23556666665422 2 2366689887
No 198
>PTZ00089 transketolase; Provisional
Probab=30.48 E-value=99 Score=30.64 Aligned_cols=50 Identities=18% Similarity=0.209 Sum_probs=32.2
Q ss_pred chHhHhhhCCceEEEeeecCCCCCCCCCCHHHHHHHHHHHHhcCCCcEEEEcCCCCC
Q 028110 97 ANTEFLKSNGIKLFQFAIEGHKEPFVNIPEDMIREALKVLLDVRNHPVLIHCKRGKH 153 (213)
Q Consensus 97 ~~~~~~~~~Gi~~~~ipi~d~~~p~~~i~~~~i~~al~~i~d~~~~PVLVHC~~Gk~ 153 (213)
...+.++..|.+++. +.+++. +.+.+.++++...+..++|++|||..-++
T Consensus 202 ~~~~~f~a~G~~~i~-v~dG~~------D~~~l~~a~~~a~~~~~~P~~I~~~T~kG 251 (661)
T PTZ00089 202 DVEKKYEAYGWHVIE-VDNGNT------DFDGLRKAIEEAKKSKGKPKLIIVKTTIG 251 (661)
T ss_pred cHHHHHHhcCCcEEE-eCCCCC------CHHHHHHHHHHHHhcCCCcEEEEEEeeec
Confidence 345567778888886 224430 13567778876655347899999975443
No 199
>cd07212 Pat_PNPLA9 Patatin-like phospholipase domain containing protein 9. PNPLA9 is a Ca-independent phospholipase that catalyzes the hydrolysis of glycerophospholipids at the sn-2 position. PNPLA9 is also known as PLA2G6 (phospholipase A2 group VI) or iPLA2beta. PLA2G6 is stimulated by ATP and inhibited by bromoenol lactone (BEL). In humans, PNPLA9 in expressed ubiquitously and is involved in signal transduction, cell proliferation, and apoptotic cell death. Mutations in human PLA2G6 leads to infantile neuroaxonal dystrophy (INAD) and idiopathic neurodegeneration with brain iron accumulation (NBIA). This family includes PLA2G6 from Homo sapiens and Rattus norvegicus.
Probab=30.37 E-value=72 Score=28.43 Aligned_cols=48 Identities=19% Similarity=0.198 Sum_probs=33.0
Q ss_pred HHHHHHhcCCCcE--EEEcCCCCChHHHHHHHHHHHCCCCHHHHHHHHHhHh
Q 028110 132 ALKVLLDVRNHPV--LIHCKRGKHRTGCLVGCLRKLQKWCLSSVFDEYQRFA 181 (213)
Q Consensus 132 al~~i~d~~~~PV--LVHC~~Gk~RTG~vva~yl~~~gws~e~al~ey~~~~ 181 (213)
+|+.|.+..+.|+ ++++-+|- =||.++|+.+.. |++.+++.+-|.++.
T Consensus 17 vL~~le~~~g~~i~~~fD~i~GT-StGgiIA~~la~-g~s~~e~~~~y~~~~ 66 (312)
T cd07212 17 MLIAIEKALGRPIRELFDWIAGT-STGGILALALLH-GKSLREARRLYLRMK 66 (312)
T ss_pred HHHHHHHHhCCCchhhccEEEee-ChHHHHHHHHHc-CCCHHHHHHHHHHhh
Confidence 4445444335565 58888887 455555555554 999999999988865
No 200
>PRK07677 short chain dehydrogenase; Provisional
Probab=30.17 E-value=2.1e+02 Score=23.49 Aligned_cols=69 Identities=7% Similarity=-0.001 Sum_probs=34.8
Q ss_pred HHHHhcCCcEEEEcCCCCCCCchHhHhhhCCceEEEeeecCCCCCCCCCCHHHHHHHHHHHHhcC-CCcEEEEcCCC
Q 028110 76 SFLQTLRLRSIIYLCPEPYPEANTEFLKSNGIKLFQFAIEGHKEPFVNIPEDMIREALKVLLDVR-NHPVLIHCKRG 151 (213)
Q Consensus 76 ~~L~~lGIktVI~Lr~e~~~~~~~~~~~~~Gi~~~~ipi~d~~~p~~~i~~~~i~~al~~i~d~~-~~PVLVHC~~G 151 (213)
..|.+.|.+.|+.-|.........+.+...+-+...++++-. +++.+.++++.+...- .--++|||.++
T Consensus 19 ~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~-------~~~~~~~~~~~~~~~~~~id~lI~~ag~ 88 (252)
T PRK07677 19 KRFAEEGANVVITGRTKEKLEEAKLEIEQFPGQVLTVQMDVR-------NPEDVQKMVEQIDEKFGRIDALINNAAG 88 (252)
T ss_pred HHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCC-------CHHHHHHHHHHHHHHhCCccEEEECCCC
Confidence 466678986555444432111112222222323333333322 2467777777766532 23599999865
No 201
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=30.05 E-value=2.7e+02 Score=22.29 Aligned_cols=70 Identities=13% Similarity=0.107 Sum_probs=35.6
Q ss_pred HHHHHhcCCcEEEEc-CCCCCCCchHhHhhhCCceEEEeeecCCCCCCCCCCHHHHHHHHHHHHhc-CCCcEEEEcCCCC
Q 028110 75 FSFLQTLRLRSIIYL-CPEPYPEANTEFLKSNGIKLFQFAIEGHKEPFVNIPEDMIREALKVLLDV-RNHPVLIHCKRGK 152 (213)
Q Consensus 75 ~~~L~~lGIktVI~L-r~e~~~~~~~~~~~~~Gi~~~~ipi~d~~~p~~~i~~~~i~~al~~i~d~-~~~PVLVHC~~Gk 152 (213)
...|.+.|.+ |+-+ |...........++..|.+...+.++-. ..+.+.++++.+.+. ..--++|||.+..
T Consensus 22 ~~~l~~~g~~-v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~-------~~~~~~~~~~~~~~~~~~id~vi~~ag~~ 93 (246)
T PRK05653 22 ALRLAADGAK-VVIYDSNEEAAEALAAELRAAGGEARVLVFDVS-------DEAAVRALIEAAVEAFGALDILVNNAGIT 93 (246)
T ss_pred HHHHHHCCCE-EEEEeCChhHHHHHHHHHHhcCCceEEEEccCC-------CHHHHHHHHHHHHHHhCCCCEEEECCCcC
Confidence 3566778988 4444 4332111122223334544443332221 135677777766542 2335899998764
No 202
>PRK08589 short chain dehydrogenase; Validated
Probab=29.93 E-value=2.1e+02 Score=24.03 Aligned_cols=68 Identities=15% Similarity=0.073 Sum_probs=37.6
Q ss_pred HHHHhcCCcEEEEcCCCCCCCchHhHhhhCCceEEEeeecCCCCCCCCCCHHHHHHHHHHHHhcCC-CcEEEEcCCC
Q 028110 76 SFLQTLRLRSIIYLCPEPYPEANTEFLKSNGIKLFQFAIEGHKEPFVNIPEDMIREALKVLLDVRN-HPVLIHCKRG 151 (213)
Q Consensus 76 ~~L~~lGIktVI~Lr~e~~~~~~~~~~~~~Gi~~~~ipi~d~~~p~~~i~~~~i~~al~~i~d~~~-~PVLVHC~~G 151 (213)
..|.+.|.+.|+.-|.+.. ....+.+++.+.+...++++-. ..+.+..+++.+.+.-+ --++|||.+.
T Consensus 24 ~~l~~~G~~vi~~~r~~~~-~~~~~~~~~~~~~~~~~~~Dl~-------~~~~~~~~~~~~~~~~g~id~li~~Ag~ 92 (272)
T PRK08589 24 IALAQEGAYVLAVDIAEAV-SETVDKIKSNGGKAKAYHVDIS-------DEQQVKDFASEIKEQFGRVDVLFNNAGV 92 (272)
T ss_pred HHHHHCCCEEEEEeCcHHH-HHHHHHHHhcCCeEEEEEeecC-------CHHHHHHHHHHHHHHcCCcCEEEECCCC
Confidence 4667789887776555211 1122223334544444444322 24567778887765322 3499999864
No 203
>PRK06194 hypothetical protein; Provisional
Probab=29.63 E-value=2.8e+02 Score=23.24 Aligned_cols=70 Identities=7% Similarity=0.052 Sum_probs=36.9
Q ss_pred HHHHhcCCcEEEEcCCCCCCCchHhHhhhCCceEEEeeecCCCCCCCCCCHHHHHHHHHHHHhcC-CCcEEEEcCCCC
Q 028110 76 SFLQTLRLRSIIYLCPEPYPEANTEFLKSNGIKLFQFAIEGHKEPFVNIPEDMIREALKVLLDVR-NHPVLIHCKRGK 152 (213)
Q Consensus 76 ~~L~~lGIktVI~Lr~e~~~~~~~~~~~~~Gi~~~~ipi~d~~~p~~~i~~~~i~~al~~i~d~~-~~PVLVHC~~Gk 152 (213)
..|.+.|.+.++--+..+......+.+...|.++..+..+-. ..+.+.++++.+.+.. +--++|||.+..
T Consensus 24 ~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~-------d~~~~~~~~~~~~~~~g~id~vi~~Ag~~ 94 (287)
T PRK06194 24 RIGAALGMKLVLADVQQDALDRAVAELRAQGAEVLGVRTDVS-------DAAQVEALADAALERFGAVHLLFNNAGVG 94 (287)
T ss_pred HHHHHCCCEEEEEeCChHHHHHHHHHHHhcCCeEEEEECCCC-------CHHHHHHHHHHHHHHcCCCCEEEECCCCC
Confidence 467778987555433321111122222334555544443322 2467777777776532 235999998764
No 204
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=29.19 E-value=2.3e+02 Score=23.73 Aligned_cols=69 Identities=16% Similarity=0.126 Sum_probs=36.0
Q ss_pred HHHHhcCCcEEEEcCCCCCCCchHhHhhhCCceEEEeeecCCCCCCCCCCHHHHHHHHHHHHhc-CCCcEEEEcCCC
Q 028110 76 SFLQTLRLRSIIYLCPEPYPEANTEFLKSNGIKLFQFAIEGHKEPFVNIPEDMIREALKVLLDV-RNHPVLIHCKRG 151 (213)
Q Consensus 76 ~~L~~lGIktVI~Lr~e~~~~~~~~~~~~~Gi~~~~ipi~d~~~p~~~i~~~~i~~al~~i~d~-~~~PVLVHC~~G 151 (213)
..|.+.|.+.++--|..+......+.+...|.+...+.++-. ..+.+..+++.+.+. ..--++|||.+.
T Consensus 28 ~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~-------~~~~v~~~~~~~~~~~g~id~li~~ag~ 97 (278)
T PRK08277 28 KELARAGAKVAILDRNQEKAEAVVAEIKAAGGEALAVKADVL-------DKESLEQARQQILEDFGPCDILINGAGG 97 (278)
T ss_pred HHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCC-------CHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 466778987665544432111122222334444444443321 245677777776553 234599999864
No 205
>PRK07710 acetolactate synthase catalytic subunit; Reviewed
Probab=29.14 E-value=3.5e+02 Score=25.92 Aligned_cols=77 Identities=13% Similarity=0.067 Sum_probs=43.0
Q ss_pred HHHHHhcCCcEEEEcCCCCCCCchHhHhhhCCceEEEeeecCCCCCCCCCCHHHHHHHHHHHHhcCCCcEEEEcCCCCCh
Q 028110 75 FSFLQTLRLRSIIYLCPEPYPEANTEFLKSNGIKLFQFAIEGHKEPFVNIPEDMIREALKVLLDVRNHPVLIHCKRGKHR 154 (213)
Q Consensus 75 ~~~L~~lGIktVI~Lr~e~~~~~~~~~~~~~Gi~~~~ipi~d~~~p~~~i~~~~i~~al~~i~d~~~~PVLVHC~~Gk~R 154 (213)
+..|+++||++|+-+-..... .+.+.+.+.||+++... ... ....+..... ...++|..+-|+.|-+=
T Consensus 23 ~~~L~~~Gv~~vFg~pG~~~~-~l~~al~~~~i~~i~~~--hE~------~A~~~A~gya---r~tg~~gv~~~t~GPG~ 90 (571)
T PRK07710 23 IEALEKEGVEVIFGYPGGAVL-PLYDALYDCGIPHILTR--HEQ------GAIHAAEGYA---RISGKPGVVIATSGPGA 90 (571)
T ss_pred HHHHHHcCCCEEEeCCCcchH-HHHHHHHhcCCcEEEeC--CHH------HHHHHHHHHH---HHhCCCeEEEECCCccH
Confidence 478999999999999886432 23444455788887532 110 0111111111 12355655556666666
Q ss_pred HHHHHHHHH
Q 028110 155 TGCLVGCLR 163 (213)
Q Consensus 155 TG~vva~yl 163 (213)
+..+.+++-
T Consensus 91 ~N~~~gl~~ 99 (571)
T PRK07710 91 TNVVTGLAD 99 (571)
T ss_pred HHHHHHHHH
Confidence 665555543
No 206
>PRK06483 dihydromonapterin reductase; Provisional
Probab=28.74 E-value=3.2e+02 Score=22.14 Aligned_cols=64 Identities=14% Similarity=0.063 Sum_probs=36.3
Q ss_pred HHHHhcCCcEEEEcCCCCCCCchHhHhhhCCceEEEeeecCCCCCCCCCCHHHHHHHHHHHHhcC-CCcEEEEcCCC
Q 028110 76 SFLQTLRLRSIIYLCPEPYPEANTEFLKSNGIKLFQFAIEGHKEPFVNIPEDMIREALKVLLDVR-NHPVLIHCKRG 151 (213)
Q Consensus 76 ~~L~~lGIktVI~Lr~e~~~~~~~~~~~~~Gi~~~~ipi~d~~~p~~~i~~~~i~~al~~i~d~~-~~PVLVHC~~G 151 (213)
..|.+.|.+.|+.-|... ...+.++..|+.++...+.+ .+.+.++++.+.+.- +--++|||.+.
T Consensus 20 ~~l~~~G~~V~~~~r~~~---~~~~~~~~~~~~~~~~D~~~---------~~~~~~~~~~~~~~~~~id~lv~~ag~ 84 (236)
T PRK06483 20 WHLLAQGQPVIVSYRTHY---PAIDGLRQAGAQCIQADFST---------NAGIMAFIDELKQHTDGLRAIIHNASD 84 (236)
T ss_pred HHHHHCCCeEEEEeCCch---hHHHHHHHcCCEEEEcCCCC---------HHHHHHHHHHHHhhCCCccEEEECCcc
Confidence 467778987776555432 12233344565544332222 356777777776532 24599999764
No 207
>PRK12939 short chain dehydrogenase; Provisional
Probab=28.72 E-value=2.4e+02 Score=22.84 Aligned_cols=70 Identities=7% Similarity=-0.071 Sum_probs=34.9
Q ss_pred HHHHhcCCcEEEEcCCCCCCCchHhHhhhCCceEEEeeecCCCCCCCCCCHHHHHHHHHHHHhc-CCCcEEEEcCCCC
Q 028110 76 SFLQTLRLRSIIYLCPEPYPEANTEFLKSNGIKLFQFAIEGHKEPFVNIPEDMIREALKVLLDV-RNHPVLIHCKRGK 152 (213)
Q Consensus 76 ~~L~~lGIktVI~Lr~e~~~~~~~~~~~~~Gi~~~~ipi~d~~~p~~~i~~~~i~~al~~i~d~-~~~PVLVHC~~Gk 152 (213)
..|.+.|.+.|+--+.++........++..+.+..-++++-. +.+.+.++++.+.+. .+--++|||.+..
T Consensus 25 ~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~-------~~~~~~~~~~~~~~~~~~id~vi~~ag~~ 95 (250)
T PRK12939 25 EALAEAGATVAFNDGLAAEARELAAALEAAGGRAHAIAADLA-------DPASVQRFFDAAAAALGGLDGLVNNAGIT 95 (250)
T ss_pred HHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCC-------CHHHHHHHHHHHHHHcCCCCEEEECCCCC
Confidence 467778987555433321111112222233333333333221 246777777776553 2335999998753
No 208
>PF04255 DUF433: Protein of unknown function (DUF433); InterPro: IPR007367 This is a family of uncharacterised proteins.; PDB: 2GA1_B.
Probab=28.57 E-value=44 Score=22.00 Aligned_cols=27 Identities=7% Similarity=-0.119 Sum_probs=15.3
Q ss_pred hHHHHHHHHHHHCCCCHHHHHHHHHhH
Q 028110 154 RTGCLVGCLRKLQKWCLSSVFDEYQRF 180 (213)
Q Consensus 154 RTG~vva~yl~~~gws~e~al~ey~~~ 180 (213)
|-.+-..+-+...||+.+++.++|-..
T Consensus 18 RI~v~~i~~~~~~G~s~eeI~~~yp~L 44 (56)
T PF04255_consen 18 RIPVRDILDLLAAGESPEEIAEDYPSL 44 (56)
T ss_dssp S-BHHHHHHHHHTT--HHHHHHHSTT-
T ss_pred eecHHHHHHHHHcCCCHHHHHHHCCCC
Confidence 443333333337899999999998643
No 209
>PRK06138 short chain dehydrogenase; Provisional
Probab=28.53 E-value=2.2e+02 Score=23.15 Aligned_cols=68 Identities=9% Similarity=0.023 Sum_probs=35.3
Q ss_pred HHHHhcCCcEEEEcCCCCCCCchHhHhhhCCceEEEeeecCCCCCCCCCCHHHHHHHHHHHHhc-CCCcEEEEcCCC
Q 028110 76 SFLQTLRLRSIIYLCPEPYPEANTEFLKSNGIKLFQFAIEGHKEPFVNIPEDMIREALKVLLDV-RNHPVLIHCKRG 151 (213)
Q Consensus 76 ~~L~~lGIktVI~Lr~e~~~~~~~~~~~~~Gi~~~~ipi~d~~~p~~~i~~~~i~~al~~i~d~-~~~PVLVHC~~G 151 (213)
..|.+.|-+.++--|..+.......... .+.+...++++-. ..+.+.++++.+.+. .+--++|||.+.
T Consensus 23 ~~l~~~G~~v~~~~r~~~~~~~~~~~~~-~~~~~~~~~~D~~-------~~~~~~~~~~~i~~~~~~id~vi~~ag~ 91 (252)
T PRK06138 23 KLFAREGARVVVADRDAEAAERVAAAIA-AGGRAFARQGDVG-------SAEAVEALVDFVAARWGRLDVLVNNAGF 91 (252)
T ss_pred HHHHHCCCeEEEecCCHHHHHHHHHHHh-cCCeEEEEEcCCC-------CHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 4566778776665565321111111111 2333333333321 246788888877653 233599999874
No 210
>COG4981 Enoyl reductase domain of yeast-type FAS1 [Lipid metabolism]
Probab=28.25 E-value=1.9e+02 Score=28.56 Aligned_cols=84 Identities=13% Similarity=0.262 Sum_probs=47.9
Q ss_pred ccccceEEcCCCChhcHHHHHhcC--CcEEEEcCCCCCCCchHhHhhhC---CceEEEeeecCCCCCCCCCCHHHHHHHH
Q 028110 59 MVDNGIFRSGFPDSANFSFLQTLR--LRSIIYLCPEPYPEANTEFLKSN---GIKLFQFAIEGHKEPFVNIPEDMIREAL 133 (213)
Q Consensus 59 ~V~~~Lyrs~~p~~~~~~~L~~lG--IktVI~Lr~e~~~~~~~~~~~~~---Gi~~~~ipi~d~~~p~~~i~~~~i~~al 133 (213)
-+++.+|--.-+...-++.+++.| |.-|+--..-+.-+.-.+..+.. |+.|+-|. |. +-++|+..+
T Consensus 98 fldpylw~~qig~krLv~kara~G~~I~gvvIsAGIP~le~A~ElI~~L~~~G~~yv~fK------PG---tIeqI~svi 168 (717)
T COG4981 98 FLDPYLWKLQIGGKRLVQKARASGAPIDGVVISAGIPSLEEAVELIEELGDDGFPYVAFK------PG---TIEQIRSVI 168 (717)
T ss_pred EechHHhhhcCChHHHHHHHHhcCCCcceEEEecCCCcHHHHHHHHHHHhhcCceeEEec------CC---cHHHHHHHH
Confidence 345555544433333445555555 55554443322112223333444 88888662 11 367899888
Q ss_pred HHHHhcCCCcEEEEcCCC
Q 028110 134 KVLLDVRNHPVLIHCKRG 151 (213)
Q Consensus 134 ~~i~d~~~~PVLVHC~~G 151 (213)
+......+.||.+|-..|
T Consensus 169 ~IAka~P~~pIilq~egG 186 (717)
T COG4981 169 RIAKANPTFPIILQWEGG 186 (717)
T ss_pred HHHhcCCCCceEEEEecC
Confidence 877666789999999887
No 211
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=28.08 E-value=3.4e+02 Score=22.39 Aligned_cols=69 Identities=12% Similarity=0.115 Sum_probs=38.6
Q ss_pred HHHHhcCCcEEEEcCCCCCCCchHhHhhhCCceEEEeeecCCCCCCCCCCHHHHHHHHHHHHhcC-CCcEEEEcCCCC
Q 028110 76 SFLQTLRLRSIIYLCPEPYPEANTEFLKSNGIKLFQFAIEGHKEPFVNIPEDMIREALKVLLDVR-NHPVLIHCKRGK 152 (213)
Q Consensus 76 ~~L~~lGIktVI~Lr~e~~~~~~~~~~~~~Gi~~~~ipi~d~~~p~~~i~~~~i~~al~~i~d~~-~~PVLVHC~~Gk 152 (213)
..|.+.|.+.|+-.+.+.. +...+.+.+.|-+...++++-. ..+.+.++++.+.+.- .--++|||.+..
T Consensus 33 ~~l~~~G~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~-------~~~~i~~~~~~~~~~~g~id~li~~ag~~ 102 (258)
T PRK06935 33 VALAKAGADIIITTHGTNW-DETRRLIEKEGRKVTFVQVDLT-------KPESAEKVVKEALEEFGKIDILVNNAGTI 102 (258)
T ss_pred HHHHHCCCEEEEEeCCcHH-HHHHHHHHhcCCceEEEEcCCC-------CHHHHHHHHHHHHHHcCCCCEEEECCCCC
Confidence 5677889988777665321 1222233333433333333221 2467777887776532 346999998653
No 212
>PRK06139 short chain dehydrogenase; Provisional
Probab=28.06 E-value=1.8e+02 Score=25.82 Aligned_cols=68 Identities=10% Similarity=0.040 Sum_probs=40.0
Q ss_pred HHHHhcCCcEEEEcCCCCCCCchHhHhhhCCceEEEeeecCCCCCCCCCCHHHHHHHHHHHHhc-CCCcEEEEcCC
Q 028110 76 SFLQTLRLRSIIYLCPEPYPEANTEFLKSNGIKLFQFAIEGHKEPFVNIPEDMIREALKVLLDV-RNHPVLIHCKR 150 (213)
Q Consensus 76 ~~L~~lGIktVI~Lr~e~~~~~~~~~~~~~Gi~~~~ipi~d~~~p~~~i~~~~i~~al~~i~d~-~~~PVLVHC~~ 150 (213)
..|.+.|.+.|+.-|.++..+...+.++..|.+...++++-. +.+++.++++.+.+. ..--++|||.+
T Consensus 25 ~~la~~G~~Vvl~~R~~~~l~~~~~~~~~~g~~~~~~~~Dv~-------d~~~v~~~~~~~~~~~g~iD~lVnnAG 93 (330)
T PRK06139 25 EAFARRGARLVLAARDEEALQAVAEECRALGAEVLVVPTDVT-------DADQVKALATQAASFGGRIDVWVNNVG 93 (330)
T ss_pred HHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCC-------CHHHHHHHHHHHHHhcCCCCEEEECCC
Confidence 467788998777656542111223334456666555554332 246788888777653 23359999964
No 213
>PRK06701 short chain dehydrogenase; Provisional
Probab=27.97 E-value=2.9e+02 Score=23.68 Aligned_cols=69 Identities=10% Similarity=0.084 Sum_probs=37.7
Q ss_pred HHHHhcCCcEEEEcCCCCC-CCchHhHhhhCCceEEEeeecCCCCCCCCCCHHHHHHHHHHHHhcCC-CcEEEEcCCC
Q 028110 76 SFLQTLRLRSIIYLCPEPY-PEANTEFLKSNGIKLFQFAIEGHKEPFVNIPEDMIREALKVLLDVRN-HPVLIHCKRG 151 (213)
Q Consensus 76 ~~L~~lGIktVI~Lr~e~~-~~~~~~~~~~~Gi~~~~ipi~d~~~p~~~i~~~~i~~al~~i~d~~~-~PVLVHC~~G 151 (213)
..|.+.|.+.++.-+.... .......++..|.+...++++-. ..+.+.++++.+.+..+ --++|||...
T Consensus 64 ~~l~~~G~~V~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~-------~~~~~~~~~~~i~~~~~~iD~lI~~Ag~ 134 (290)
T PRK06701 64 VLFAKEGADIAIVYLDEHEDANETKQRVEKEGVKCLLIPGDVS-------DEAFCKDAVEETVRELGRLDILVNNAAF 134 (290)
T ss_pred HHHHHCCCEEEEEeCCcchHHHHHHHHHHhcCCeEEEEEccCC-------CHHHHHHHHHHHHHHcCCCCEEEECCcc
Confidence 4666789886665554321 11222233444555544444332 24567777777765332 2489999865
No 214
>cd01535 4RHOD_Repeat_4 Member of the Rhodanese Homology Domain superfamily, repeat 4. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 4th repeat which, in general, contains the putative catalytic Cys residue.
Probab=27.84 E-value=1.8e+02 Score=22.76 Aligned_cols=38 Identities=11% Similarity=0.077 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHhcCCCcEEEEcCCCCChHHHHHHHHHHHCC
Q 028110 126 EDMIREALKVLLDVRNHPVLIHCKRGKHRTGCLVGCLRKLQK 167 (213)
Q Consensus 126 ~~~i~~al~~i~d~~~~PVLVHC~~Gk~RTG~vva~yl~~~g 167 (213)
.+.+.+.+..+ ..+.||+|+|..|. ++..+ +..|...|
T Consensus 36 ~~~l~~~l~~l--~~~~~vVv~c~~g~-~a~~a-a~~L~~~G 73 (145)
T cd01535 36 RAQLAQALEKL--PAAERYVLTCGSSL-LARFA-AADLAALT 73 (145)
T ss_pred HHHHHHHHHhc--CCCCCEEEEeCCCh-HHHHH-HHHHHHcC
Confidence 34555555443 24689999999863 55444 43444333
No 215
>PRK05876 short chain dehydrogenase; Provisional
Probab=27.77 E-value=2.1e+02 Score=24.32 Aligned_cols=68 Identities=7% Similarity=0.075 Sum_probs=36.8
Q ss_pred HHHHhcCCcEEEEcCCCCCCCchHhHhhhCCceEEEeeecCCCCCCCCCCHHHHHHHHHHHHhcCC-CcEEEEcCC
Q 028110 76 SFLQTLRLRSIIYLCPEPYPEANTEFLKSNGIKLFQFAIEGHKEPFVNIPEDMIREALKVLLDVRN-HPVLIHCKR 150 (213)
Q Consensus 76 ~~L~~lGIktVI~Lr~e~~~~~~~~~~~~~Gi~~~~ipi~d~~~p~~~i~~~~i~~al~~i~d~~~-~PVLVHC~~ 150 (213)
..|.+.|.+.|+.-+..+.-....+.++..|.+..-++++-. ..+.+.++++.+.+.-+ --++|||.+
T Consensus 24 ~~La~~G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dv~-------d~~~v~~~~~~~~~~~g~id~li~nAg 92 (275)
T PRK05876 24 TEFARRGARVVLGDVDKPGLRQAVNHLRAEGFDVHGVMCDVR-------HREEVTHLADEAFRLLGHVDVVFSNAG 92 (275)
T ss_pred HHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEeCCCC-------CHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence 567788998776555532111112223344554444443221 24677778777665322 348999975
No 216
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=27.76 E-value=3.5e+02 Score=23.38 Aligned_cols=72 Identities=15% Similarity=0.142 Sum_probs=42.0
Q ss_pred HHHHhcCCcEEEEcC---CC-C-CCCchHh---HhhhCCceEEEeeecCCCCCCCCCCHHHHHHHHHHHHhcCC-CcEEE
Q 028110 76 SFLQTLRLRSIIYLC---PE-P-YPEANTE---FLKSNGIKLFQFAIEGHKEPFVNIPEDMIREALKVLLDVRN-HPVLI 146 (213)
Q Consensus 76 ~~L~~lGIktVI~Lr---~e-~-~~~~~~~---~~~~~Gi~~~~ipi~d~~~p~~~i~~~~i~~al~~i~d~~~-~PVLV 146 (213)
+..++.|++..++.. .. . .++...+ .+.+.|++.+.++ |... ...++++.+.++.+.+.-+ -|+-+
T Consensus 126 ~~ak~~G~~v~~~~~~~~d~~~~~~~~~~~~~~~~~~~g~~~i~l~--DT~G---~~~P~~v~~lv~~l~~~~~~~~l~~ 200 (273)
T cd07941 126 AYLKSHGREVIFDAEHFFDGYKANPEYALATLKAAAEAGADWLVLC--DTNG---GTLPHEIAEIVKEVRERLPGVPLGI 200 (273)
T ss_pred HHHHHcCCeEEEeEEeccccCCCCHHHHHHHHHHHHhCCCCEEEEe--cCCC---CCCHHHHHHHHHHHHHhCCCCeeEE
Confidence 466788998777422 11 1 1112222 2356788876544 3211 2346788888888876433 67888
Q ss_pred EcCCCC
Q 028110 147 HCKRGK 152 (213)
Q Consensus 147 HC~~Gk 152 (213)
||+.-.
T Consensus 201 H~Hnd~ 206 (273)
T cd07941 201 HAHNDS 206 (273)
T ss_pred EecCCC
Confidence 887643
No 217
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=27.70 E-value=96 Score=22.64 Aligned_cols=27 Identities=26% Similarity=0.363 Sum_probs=19.4
Q ss_pred CCcEEEEcCCCCChHHHHHHHHHHH---CCC
Q 028110 141 NHPVLIHCKRGKHRTGCLVGCLRKL---QKW 168 (213)
Q Consensus 141 ~~PVLVHC~~Gk~RTG~vva~yl~~---~gw 168 (213)
...||+-|.+|.+ |++++--.... +|+
T Consensus 3 ~~~ILl~C~~G~s-SS~l~~k~~~~~~~~gi 32 (95)
T TIGR00853 3 ETNILLLCAAGMS-TSLLVNKMNKAAEEYGV 32 (95)
T ss_pred ccEEEEECCCchh-HHHHHHHHHHHHHHCCC
Confidence 3579999999987 77777555542 566
No 218
>PRK06181 short chain dehydrogenase; Provisional
Probab=27.60 E-value=2.5e+02 Score=23.13 Aligned_cols=70 Identities=7% Similarity=-0.006 Sum_probs=34.3
Q ss_pred HHHHhcCCcEEEEcCCCCCCCchHhHhhhCCceEEEeeecCCCCCCCCCCHHHHHHHHHHHHhcC-CCcEEEEcCCCC
Q 028110 76 SFLQTLRLRSIIYLCPEPYPEANTEFLKSNGIKLFQFAIEGHKEPFVNIPEDMIREALKVLLDVR-NHPVLIHCKRGK 152 (213)
Q Consensus 76 ~~L~~lGIktVI~Lr~e~~~~~~~~~~~~~Gi~~~~ipi~d~~~p~~~i~~~~i~~al~~i~d~~-~~PVLVHC~~Gk 152 (213)
..|.+.|.+.|+--|.....+...+.+...|-+...+..+-. ..+.+.++++.+.+.- +--++|||.+..
T Consensus 19 ~~l~~~g~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~-------~~~~~~~~~~~~~~~~~~id~vi~~ag~~ 89 (263)
T PRK06181 19 VRLARAGAQLVLAARNETRLASLAQELADHGGEALVVPTDVS-------DAEACERLIEAAVARFGGIDILVNNAGIT 89 (263)
T ss_pred HHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCC-------CHHHHHHHHHHHHHHcCCCCEEEECCCcc
Confidence 456677886555444421111112222233333333332221 2456777777775532 335999997653
No 219
>PRK09389 (R)-citramalate synthase; Provisional
Probab=27.03 E-value=5.6e+02 Score=24.44 Aligned_cols=72 Identities=15% Similarity=0.087 Sum_probs=45.0
Q ss_pred HHHHhcCCcEEEEcCCCCCC--Cc---hHhHhhhCCceEEEeeecCCCCCCCCCCHHHHHHHHHHHHhcCCCcEEEEcCC
Q 028110 76 SFLQTLRLRSIIYLCPEPYP--EA---NTEFLKSNGIKLFQFAIEGHKEPFVNIPEDMIREALKVLLDVRNHPVLIHCKR 150 (213)
Q Consensus 76 ~~L~~lGIktVI~Lr~e~~~--~~---~~~~~~~~Gi~~~~ipi~d~~~p~~~i~~~~i~~al~~i~d~~~~PVLVHC~~ 150 (213)
+++++.|++..+++-..... +. ..+.+.+.|.+.+.+|=.... ..+.++.+.++.+.+..+-|+-+||+.
T Consensus 121 ~~ak~~g~~v~~~~ed~~r~~~~~l~~~~~~~~~~Ga~~i~l~DTvG~-----~~P~~~~~lv~~l~~~~~v~l~~H~HN 195 (488)
T PRK09389 121 EYAKDHGLIVELSGEDASRADLDFLKELYKAGIEAGADRICFCDTVGI-----LTPEKTYELFKRLSELVKGPVSIHCHN 195 (488)
T ss_pred HHHHHCCCEEEEEEeeCCCCCHHHHHHHHHHHHhCCCCEEEEecCCCC-----cCHHHHHHHHHHHHhhcCCeEEEEecC
Confidence 56778898877766432111 11 223345689988877643321 235678878888776556789999986
Q ss_pred CC
Q 028110 151 GK 152 (213)
Q Consensus 151 Gk 152 (213)
-.
T Consensus 196 D~ 197 (488)
T PRK09389 196 DF 197 (488)
T ss_pred Cc
Confidence 43
No 220
>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type. Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed.
Probab=27.03 E-value=4.1e+02 Score=25.31 Aligned_cols=38 Identities=11% Similarity=0.056 Sum_probs=26.0
Q ss_pred HHHHHhcCCcEEEEcCCCCCCCchHhHhh-hCCceEEEee
Q 028110 75 FSFLQTLRLRSIIYLCPEPYPEANTEFLK-SNGIKLFQFA 113 (213)
Q Consensus 75 ~~~L~~lGIktVI~Lr~e~~~~~~~~~~~-~~Gi~~~~ip 113 (213)
+..|+++||++|+-+-..... ...+.+. ..+|+++...
T Consensus 8 ~~~L~~~Gv~~vFgvpG~~~~-~l~~~l~~~~~i~~i~~~ 46 (558)
T TIGR00118 8 IESLKDEGVKTVFGYPGGAIL-PIYDALYNDSGIEHILVR 46 (558)
T ss_pred HHHHHHcCCCEEEeCCCcchH-HHHHHhhccCCceEEEeC
Confidence 468999999999998876332 2333343 4688888654
No 221
>PRK06182 short chain dehydrogenase; Validated
Probab=27.00 E-value=3.3e+02 Score=22.71 Aligned_cols=63 Identities=14% Similarity=0.107 Sum_probs=37.3
Q ss_pred HHHHhcCCcEEEEcCCCCCCCchHhHhhhCCceEEEeeecCCCCCCCCCCHHHHHHHHHHHHhcCC-CcEEEEcCCC
Q 028110 76 SFLQTLRLRSIIYLCPEPYPEANTEFLKSNGIKLFQFAIEGHKEPFVNIPEDMIREALKVLLDVRN-HPVLIHCKRG 151 (213)
Q Consensus 76 ~~L~~lGIktVI~Lr~e~~~~~~~~~~~~~Gi~~~~ipi~d~~~p~~~i~~~~i~~al~~i~d~~~-~PVLVHC~~G 151 (213)
..|.+.|.+.++.-|... ...+ +...++.++...+.+ .+.+.++++.+.+..+ --++|||.+.
T Consensus 21 ~~l~~~G~~V~~~~r~~~---~l~~-~~~~~~~~~~~Dv~~---------~~~~~~~~~~~~~~~~~id~li~~ag~ 84 (273)
T PRK06182 21 RRLAAQGYTVYGAARRVD---KMED-LASLGVHPLSLDVTD---------EASIKAAVDTIIAEEGRIDVLVNNAGY 84 (273)
T ss_pred HHHHHCCCEEEEEeCCHH---HHHH-HHhCCCeEEEeeCCC---------HHHHHHHHHHHHHhcCCCCEEEECCCc
Confidence 466678987666555532 1122 233567666554433 4677778877765333 3599999753
No 222
>PRK07035 short chain dehydrogenase; Provisional
Probab=26.85 E-value=2.2e+02 Score=23.28 Aligned_cols=69 Identities=12% Similarity=0.014 Sum_probs=35.5
Q ss_pred HHHHhcCCcEEEEcCCCCCCCchHhHhhhCCceEEEeeecCCCCCCCCCCHHHHHHHHHHHHhc-CCCcEEEEcCCC
Q 028110 76 SFLQTLRLRSIIYLCPEPYPEANTEFLKSNGIKLFQFAIEGHKEPFVNIPEDMIREALKVLLDV-RNHPVLIHCKRG 151 (213)
Q Consensus 76 ~~L~~lGIktVI~Lr~e~~~~~~~~~~~~~Gi~~~~ipi~d~~~p~~~i~~~~i~~al~~i~d~-~~~PVLVHC~~G 151 (213)
..|.+.|.+.|+--|.....+...+.+.+.|-+...+.++-. ..+.+.++++.+.+. ..--++|||.++
T Consensus 26 ~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~-------~~~~~~~~~~~~~~~~~~id~li~~ag~ 95 (252)
T PRK07035 26 KLLAQQGAHVIVSSRKLDGCQAVADAIVAAGGKAEALACHIG-------EMEQIDALFAHIRERHGRLDILVNNAAA 95 (252)
T ss_pred HHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCC-------CHHHHHHHHHHHHHHcCCCCEEEECCCc
Confidence 566778986444434321111122223334444444444322 135677777766553 235699999875
No 223
>PRK06114 short chain dehydrogenase; Provisional
Probab=26.78 E-value=3.5e+02 Score=22.24 Aligned_cols=69 Identities=10% Similarity=0.025 Sum_probs=37.5
Q ss_pred HHHHhcCCcEEEEcCCCCCC-CchHhHhhhCCceEEEeeecCCCCCCCCCCHHHHHHHHHHHHhcC-CCcEEEEcCCC
Q 028110 76 SFLQTLRLRSIIYLCPEPYP-EANTEFLKSNGIKLFQFAIEGHKEPFVNIPEDMIREALKVLLDVR-NHPVLIHCKRG 151 (213)
Q Consensus 76 ~~L~~lGIktVI~Lr~e~~~-~~~~~~~~~~Gi~~~~ipi~d~~~p~~~i~~~~i~~al~~i~d~~-~~PVLVHC~~G 151 (213)
..|.+.|.+.|+.-+..+.. ....+.+...|-+...++++-. +.+.+.++++.+.+.- .--++|||.+.
T Consensus 26 ~~l~~~G~~v~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~-------~~~~i~~~~~~~~~~~g~id~li~~ag~ 96 (254)
T PRK06114 26 IGLAQAGADVALFDLRTDDGLAETAEHIEAAGRRAIQIAADVT-------SKADLRAAVARTEAELGALTLAVNAAGI 96 (254)
T ss_pred HHHHHCCCEEEEEeCCcchHHHHHHHHHHhcCCceEEEEcCCC-------CHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 56778898777765553211 1122223334544444443322 2456777777766532 23499999864
No 224
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=26.72 E-value=5.3e+02 Score=24.09 Aligned_cols=68 Identities=16% Similarity=0.306 Sum_probs=41.5
Q ss_pred hcCCcEEEEcCCCCC-C-CchHhHh-hhCCceEEEeeecCCCCCCCCCCHHHHHHHHHHHHhcCCCcEEEEcCCCCChHH
Q 028110 80 TLRLRSIIYLCPEPY-P-EANTEFL-KSNGIKLFQFAIEGHKEPFVNIPEDMIREALKVLLDVRNHPVLIHCKRGKHRTG 156 (213)
Q Consensus 80 ~lGIktVI~Lr~e~~-~-~~~~~~~-~~~Gi~~~~ipi~d~~~p~~~i~~~~i~~al~~i~d~~~~PVLVHC~~Gk~RTG 156 (213)
..|+.++|++-.+.. . .+..+++ .+...+.+-+-+++-..+ ..+.++++... .++||++. +.|..-.|
T Consensus 174 g~g~s~~vs~Gn~~d~~~~d~l~~l~~D~~t~~I~ly~E~~~~~------~~f~~aa~~a~--~~KPVv~~-k~Grs~~g 244 (447)
T TIGR02717 174 GVGFSYFVSLGNKADIDESDLLEYLADDPDTKVILLYLEGIKDG------RKFLKTAREIS--KKKPIVVL-KSGTSEAG 244 (447)
T ss_pred CCCcceEEECCchhhCCHHHHHHHHhhCCCCCEEEEEecCCCCH------HHHHHHHHHHc--CCCCEEEE-ecCCChhh
Confidence 468999999987621 1 1233333 457888888888875432 33444444442 48999995 56544333
No 225
>PRK12828 short chain dehydrogenase; Provisional
Probab=26.58 E-value=2.5e+02 Score=22.42 Aligned_cols=68 Identities=7% Similarity=0.003 Sum_probs=36.2
Q ss_pred HHHHhcCCcEEEEcCCCCCCCchHhHhhhCCceEEEeeecCCCCCCCCCCHHHHHHHHHHHHhcC-CCcEEEEcCCCC
Q 028110 76 SFLQTLRLRSIIYLCPEPYPEANTEFLKSNGIKLFQFAIEGHKEPFVNIPEDMIREALKVLLDVR-NHPVLIHCKRGK 152 (213)
Q Consensus 76 ~~L~~lGIktVI~Lr~e~~~~~~~~~~~~~Gi~~~~ipi~d~~~p~~~i~~~~i~~al~~i~d~~-~~PVLVHC~~Gk 152 (213)
..|.+.|.+.++--|...............+.+++...+.+ .+++.++++.+.+.- +--++|||.+..
T Consensus 25 ~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~---------~~~~~~~~~~~~~~~~~~d~vi~~ag~~ 93 (239)
T PRK12828 25 AWLAARGARVALIGRGAAPLSQTLPGVPADALRIGGIDLVD---------PQAARRAVDEVNRQFGRLDALVNIAGAF 93 (239)
T ss_pred HHHHHCCCeEEEEeCChHhHHHHHHHHhhcCceEEEeecCC---------HHHHHHHHHHHHHHhCCcCEEEECCccc
Confidence 56667798855555543211111122233456655433333 356777777766532 234889987654
No 226
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=26.52 E-value=50 Score=25.62 Aligned_cols=26 Identities=23% Similarity=0.327 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHhc---CCCcEEEEcCCCC
Q 028110 127 DMIREALKVLLDV---RNHPVLIHCKRGK 152 (213)
Q Consensus 127 ~~i~~al~~i~d~---~~~PVLVHC~~Gk 152 (213)
+.|..+.+.|... ..+.++|||+...
T Consensus 79 daI~~va~~La~~~~~~~g~iVvHtSGa~ 107 (127)
T PF10727_consen 79 DAIAEVAEQLAQYGAWRPGQIVVHTSGAL 107 (127)
T ss_dssp CHHHHHHHHHHCC--S-TT-EEEES-SS-
T ss_pred HHHHHHHHHHHHhccCCCCcEEEECCCCC
Confidence 4677777777653 4678999998754
No 227
>cd05567 PTS_IIB_mannitol PTS_IIB_mannitol: subunit IIB of enzyme II (EII) of the mannitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a mannitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIA, IIB, and IIC domains are expressed from the mtlA gene as a single protein, also known as the mannitol PTS permease, the mtl transporter, or MtlA. MtlA is only functional as a dimer with the dimer contacts occuring between the IIC domains. MtlA takes up exogenous mannitol releasing the phosphate ester into the cytoplasm in preparation for oxidation to fructose-6-phosphate by the NAD-dependent mannitol-P dehydrogenase (MtlD). The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include mannitol, chitobiose/lichenan, ascorbate, lactose, galactitol, fructose, and a s
Probab=26.42 E-value=98 Score=21.83 Aligned_cols=22 Identities=23% Similarity=0.434 Sum_probs=16.1
Q ss_pred cEEEEcCCCCChHHHHHHHHHH
Q 028110 143 PVLIHCKRGKHRTGCLVGCLRK 164 (213)
Q Consensus 143 PVLVHC~~Gk~RTG~vva~yl~ 164 (213)
.|++.|.+|.+-+-++..-+..
T Consensus 2 kilvvCg~G~gtS~ml~~ki~~ 23 (87)
T cd05567 2 KIVFACDAGMGSSAMGASVLRK 23 (87)
T ss_pred EEEEECCCCccHHHHHHHHHHH
Confidence 5899999999765555555554
No 228
>PRK05650 short chain dehydrogenase; Provisional
Probab=26.39 E-value=2.4e+02 Score=23.48 Aligned_cols=69 Identities=10% Similarity=-0.044 Sum_probs=36.1
Q ss_pred HHHHhcCCcEEEEcCCCCCCCchHhHhhhCCceEEEeeecCCCCCCCCCCHHHHHHHHHHHHhcC-CCcEEEEcCCC
Q 028110 76 SFLQTLRLRSIIYLCPEPYPEANTEFLKSNGIKLFQFAIEGHKEPFVNIPEDMIREALKVLLDVR-NHPVLIHCKRG 151 (213)
Q Consensus 76 ~~L~~lGIktVI~Lr~e~~~~~~~~~~~~~Gi~~~~ipi~d~~~p~~~i~~~~i~~al~~i~d~~-~~PVLVHC~~G 151 (213)
..|.+.|.+.++.-+..+..+.....+...|-+...+.++-. ..+.+.++++.+.... .--++|||.+.
T Consensus 18 ~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~-------~~~~~~~~~~~i~~~~~~id~lI~~ag~ 87 (270)
T PRK05650 18 LRWAREGWRLALADVNEEGGEETLKLLREAGGDGFYQRCDVR-------DYSQLTALAQACEEKWGGIDVIVNNAGV 87 (270)
T ss_pred HHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEccCC-------CHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 466778988666555432111111223334444444444221 2456777777665432 33599999764
No 229
>PRK08527 acetolactate synthase 3 catalytic subunit; Validated
Probab=26.32 E-value=4.3e+02 Score=25.29 Aligned_cols=39 Identities=13% Similarity=-0.002 Sum_probs=25.9
Q ss_pred HHHHHhcCCcEEEEcCCCCCCCchHhHhhhCCceEEEee
Q 028110 75 FSFLQTLRLRSIIYLCPEPYPEANTEFLKSNGIKLFQFA 113 (213)
Q Consensus 75 ~~~L~~lGIktVI~Lr~e~~~~~~~~~~~~~Gi~~~~ip 113 (213)
...|+++||++|+-+-......-.....+..||+++...
T Consensus 10 ~~~L~~~Gv~~vFgipG~~~~~l~~~l~~~~~i~~v~~r 48 (563)
T PRK08527 10 CEALKEEGVKVVFGYPGGAILNIYDEIYKQNYFKHILTR 48 (563)
T ss_pred HHHHHHcCCCEEEECCCcchHHHHHHHhccCCCeEEEec
Confidence 468999999999999876432222222233588888654
No 230
>PRK07890 short chain dehydrogenase; Provisional
Probab=26.12 E-value=2.3e+02 Score=23.14 Aligned_cols=69 Identities=7% Similarity=-0.015 Sum_probs=35.3
Q ss_pred HHHHhcCCcEEEEcCCCCCCCchHhHhhhCCceEEEeeecCCCCCCCCCCHHHHHHHHHHHHhcCC-CcEEEEcCCC
Q 028110 76 SFLQTLRLRSIIYLCPEPYPEANTEFLKSNGIKLFQFAIEGHKEPFVNIPEDMIREALKVLLDVRN-HPVLIHCKRG 151 (213)
Q Consensus 76 ~~L~~lGIktVI~Lr~e~~~~~~~~~~~~~Gi~~~~ipi~d~~~p~~~i~~~~i~~al~~i~d~~~-~PVLVHC~~G 151 (213)
..|.+.|.+.++.-|.++..+.....+...|.++..+.++-. +.+.+..+++.+.+.-+ --++|||...
T Consensus 23 ~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~-------~~~~~~~~~~~~~~~~g~~d~vi~~ag~ 92 (258)
T PRK07890 23 VRAARAGADVVLAARTAERLDEVAAEIDDLGRRALAVPTDIT-------DEDQCANLVALALERFGRVDALVNNAFR 92 (258)
T ss_pred HHHHHcCCEEEEEeCCHHHHHHHHHHHHHhCCceEEEecCCC-------CHHHHHHHHHHHHHHcCCccEEEECCcc
Confidence 467788986555544432111122222333444444443322 24567777776655323 3499999754
No 231
>PRK07774 short chain dehydrogenase; Provisional
Probab=26.03 E-value=2.6e+02 Score=22.70 Aligned_cols=69 Identities=7% Similarity=-0.019 Sum_probs=34.6
Q ss_pred HHHHhcCCcEEEEcCCCCCCCchHhHhhhCCceEEEeeecCCCCCCCCCCHHHHHHHHHHHHhcC-CCcEEEEcCCC
Q 028110 76 SFLQTLRLRSIIYLCPEPYPEANTEFLKSNGIKLFQFAIEGHKEPFVNIPEDMIREALKVLLDVR-NHPVLIHCKRG 151 (213)
Q Consensus 76 ~~L~~lGIktVI~Lr~e~~~~~~~~~~~~~Gi~~~~ipi~d~~~p~~~i~~~~i~~al~~i~d~~-~~PVLVHC~~G 151 (213)
..|.+.|.+.|+--|.+.........+...+-....+.++-. ..+.+.++++.+.+.- .--++|||.+.
T Consensus 24 ~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~-------~~~~~~~~~~~~~~~~~~id~vi~~ag~ 93 (250)
T PRK07774 24 EALAREGASVVVADINAEGAERVAKQIVADGGTAIAVQVDVS-------DPDSAKAMADATVSAFGGIDYLVNNAAI 93 (250)
T ss_pred HHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCC-------CHHHHHHHHHHHHHHhCCCCEEEECCCC
Confidence 466678987666555432111111222222222222332221 2456777777765532 23599999875
No 232
>PRK01045 ispH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed
Probab=25.88 E-value=3.1e+02 Score=24.52 Aligned_cols=79 Identities=13% Similarity=0.119 Sum_probs=43.7
Q ss_pred eEEcCCC--ChhcHHHHHhcCCcEEEEcCC-----------CCCCCchHhHhhhCCceEEEeeecCCCCCCCCCCHHHHH
Q 028110 64 IFRSGFP--DSANFSFLQTLRLRSIIYLCP-----------EPYPEANTEFLKSNGIKLFQFAIEGHKEPFVNIPEDMIR 130 (213)
Q Consensus 64 Lyrs~~p--~~~~~~~L~~lGIktVI~Lr~-----------e~~~~~~~~~~~~~Gi~~~~ipi~d~~~p~~~i~~~~i~ 130 (213)
+|.=|.+ ++.-+..|+++||++|=++.. ...+....+.+++.|++.+.-.+ |++ ..+.
T Consensus 33 iytlG~iIHN~~vv~~L~~~GV~~v~~~~~v~~~~~ViirAHGv~~~~~~~~~~~g~~viDaTC-----P~V----~k~~ 103 (298)
T PRK01045 33 IYVRHEIVHNRYVVERLEKKGAIFVEELDEVPDGAIVIFSAHGVSPAVREEAKERGLTVIDATC-----PLV----TKVH 103 (298)
T ss_pred eEEEecCccCHHHHHHHHHCCCEEecCcccCCCCCEEEEeCCCCCHHHHHHHHHCCCeEEeCCC-----ccc----hHHH
Confidence 5544443 455678888888877644332 12233455566778887764322 322 2344
Q ss_pred HHHHHHHhcCCCcEEEEcCCCC
Q 028110 131 EALKVLLDVRNHPVLIHCKRGK 152 (213)
Q Consensus 131 ~al~~i~d~~~~PVLVHC~~Gk 152 (213)
+.++.+.+ +++.|+++...+-
T Consensus 104 ~~v~~~~~-~Gy~vvi~G~~~H 124 (298)
T PRK01045 104 KEVARMSR-EGYEIILIGHKGH 124 (298)
T ss_pred HHHHHHHh-CCCEEEEEeCCCC
Confidence 44444433 5777777776553
No 233
>PRK05993 short chain dehydrogenase; Provisional
Probab=25.81 E-value=3.6e+02 Score=22.64 Aligned_cols=62 Identities=18% Similarity=0.207 Sum_probs=36.2
Q ss_pred HHHHhcCCcEEEEcCCCCCCCchHhHhhhCCceEEEeeecCCCCCCCCCCHHHHHHHHHHHHhcC--CCcEEEEcCC
Q 028110 76 SFLQTLRLRSIIYLCPEPYPEANTEFLKSNGIKLFQFAIEGHKEPFVNIPEDMIREALKVLLDVR--NHPVLIHCKR 150 (213)
Q Consensus 76 ~~L~~lGIktVI~Lr~e~~~~~~~~~~~~~Gi~~~~ipi~d~~~p~~~i~~~~i~~al~~i~d~~--~~PVLVHC~~ 150 (213)
..|.+.|.+.|+.-|..+ . .+.+...|+.++.+.+.+ .+.+.++++.+.+.. .--++|||.+
T Consensus 22 ~~l~~~G~~Vi~~~r~~~---~-~~~l~~~~~~~~~~Dl~d---------~~~~~~~~~~~~~~~~g~id~li~~Ag 85 (277)
T PRK05993 22 RALQSDGWRVFATCRKEE---D-VAALEAEGLEAFQLDYAE---------PESIAALVAQVLELSGGRLDALFNNGA 85 (277)
T ss_pred HHHHHCCCEEEEEECCHH---H-HHHHHHCCceEEEccCCC---------HHHHHHHHHHHHHHcCCCccEEEECCC
Confidence 466778988666555432 1 122344577666543333 456777777765432 2358999953
No 234
>PRK07791 short chain dehydrogenase; Provisional
Probab=25.78 E-value=3e+02 Score=23.45 Aligned_cols=69 Identities=9% Similarity=-0.100 Sum_probs=36.8
Q ss_pred HHHHhcCCcEEEEcCCCC------CCC---chHhHhhhCCceEEEeeecCCCCCCCCCCHHHHHHHHHHHHhcC-CCcEE
Q 028110 76 SFLQTLRLRSIIYLCPEP------YPE---ANTEFLKSNGIKLFQFAIEGHKEPFVNIPEDMIREALKVLLDVR-NHPVL 145 (213)
Q Consensus 76 ~~L~~lGIktVI~Lr~e~------~~~---~~~~~~~~~Gi~~~~ipi~d~~~p~~~i~~~~i~~al~~i~d~~-~~PVL 145 (213)
..|.+.|.+.|+.-+... ... ...+.+...|.+...++++-. +.+.+.++++.+.+.- .-.++
T Consensus 24 ~~la~~G~~vii~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~-------~~~~v~~~~~~~~~~~g~id~l 96 (286)
T PRK07791 24 LAFAAEGARVVVNDIGVGLDGSASGGSAAQAVVDEIVAAGGEAVANGDDIA-------DWDGAANLVDAAVETFGGLDVL 96 (286)
T ss_pred HHHHHCCCEEEEeeCCccccccccchhHHHHHHHHHHhcCCceEEEeCCCC-------CHHHHHHHHHHHHHhcCCCCEE
Confidence 466778988777544320 001 112222334544444443322 2467888888776532 33599
Q ss_pred EEcCCC
Q 028110 146 IHCKRG 151 (213)
Q Consensus 146 VHC~~G 151 (213)
|||.+.
T Consensus 97 v~nAG~ 102 (286)
T PRK07791 97 VNNAGI 102 (286)
T ss_pred EECCCC
Confidence 999653
No 235
>PRK12743 oxidoreductase; Provisional
Probab=25.77 E-value=3e+02 Score=22.68 Aligned_cols=70 Identities=14% Similarity=0.068 Sum_probs=37.8
Q ss_pred HHHHhcCCcEEEEcCCCCC-CCchHhHhhhCCceEEEeeecCCCCCCCCCCHHHHHHHHHHHHhcCC-CcEEEEcCCCC
Q 028110 76 SFLQTLRLRSIIYLCPEPY-PEANTEFLKSNGIKLFQFAIEGHKEPFVNIPEDMIREALKVLLDVRN-HPVLIHCKRGK 152 (213)
Q Consensus 76 ~~L~~lGIktVI~Lr~e~~-~~~~~~~~~~~Gi~~~~ipi~d~~~p~~~i~~~~i~~al~~i~d~~~-~PVLVHC~~Gk 152 (213)
..|.+.|.+.++..+.... .....+.++..|-+...+.++-. ..+.+.++++.+.+.-+ --++|||.+..
T Consensus 20 ~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~-------~~~~~~~~~~~~~~~~~~id~li~~ag~~ 91 (256)
T PRK12743 20 LLLAQQGFDIGITWHSDEEGAKETAEEVRSHGVRAEIRQLDLS-------DLPEGAQALDKLIQRLGRIDVLVNNAGAM 91 (256)
T ss_pred HHHHHCCCEEEEEeCCChHHHHHHHHHHHhcCCceEEEEccCC-------CHHHHHHHHHHHHHHcCCCCEEEECCCCC
Confidence 4666789887776554321 11122233345544444443322 14667777777765322 34899997643
No 236
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=25.75 E-value=5.2e+02 Score=23.62 Aligned_cols=70 Identities=11% Similarity=0.028 Sum_probs=41.4
Q ss_pred HHHHhcCCcEEEEcC-----CCCC--C-C---chHhHhhhCCceEEEeeecCCCCCCCCCCHHHHHHHHHHHHhcCC-Cc
Q 028110 76 SFLQTLRLRSIIYLC-----PEPY--P-E---ANTEFLKSNGIKLFQFAIEGHKEPFVNIPEDMIREALKVLLDVRN-HP 143 (213)
Q Consensus 76 ~~L~~lGIktVI~Lr-----~e~~--~-~---~~~~~~~~~Gi~~~~ipi~d~~~p~~~i~~~~i~~al~~i~d~~~-~P 143 (213)
.+.++.|++..+++. +... + + ...+.+.+.|++.+.++=... -..+.++.+.++.+.+.-+ .|
T Consensus 169 ~~Ak~~Gl~v~~~is~~fg~p~~~r~~~~~l~~~~~~~~~~Gad~I~l~DT~G-----~a~P~~v~~lv~~l~~~~~~~~ 243 (347)
T PLN02746 169 LAAKKHSIPVRGYVSCVVGCPIEGPVPPSKVAYVAKELYDMGCYEISLGDTIG-----VGTPGTVVPMLEAVMAVVPVDK 243 (347)
T ss_pred HHHHHcCCeEEEEEEeeecCCccCCCCHHHHHHHHHHHHHcCCCEEEecCCcC-----CcCHHHHHHHHHHHHHhCCCCe
Confidence 455678988876663 2211 1 1 123334568988776542221 1246788888888876433 46
Q ss_pred EEEEcCC
Q 028110 144 VLIHCKR 150 (213)
Q Consensus 144 VLVHC~~ 150 (213)
+-+||+.
T Consensus 244 i~~H~Hn 250 (347)
T PLN02746 244 LAVHFHD 250 (347)
T ss_pred EEEEECC
Confidence 8888875
No 237
>PRK06965 acetolactate synthase 3 catalytic subunit; Validated
Probab=25.74 E-value=4e+02 Score=25.73 Aligned_cols=38 Identities=11% Similarity=-0.123 Sum_probs=25.9
Q ss_pred HHHHHhcCCcEEEEcCCCCCCCchHhHhh-hCCceEEEee
Q 028110 75 FSFLQTLRLRSIIYLCPEPYPEANTEFLK-SNGIKLFQFA 113 (213)
Q Consensus 75 ~~~L~~lGIktVI~Lr~e~~~~~~~~~~~-~~Gi~~~~ip 113 (213)
...|+++||++|.-+-..... ..-+.+. ..||+++...
T Consensus 28 ~~~L~~~GV~~vFgvpG~~~~-~l~dal~~~~~i~~i~~r 66 (587)
T PRK06965 28 MKALAAEGVEFIWGYPGGAVL-YIYDELYKQDKIQHVLVR 66 (587)
T ss_pred HHHHHHcCCCEEEecCCcchH-HHHHHHhhcCCCeEEEeC
Confidence 478999999999999876432 2333333 3578888653
No 238
>PRK07063 short chain dehydrogenase; Provisional
Probab=25.72 E-value=2.7e+02 Score=22.97 Aligned_cols=69 Identities=7% Similarity=0.005 Sum_probs=35.6
Q ss_pred HHHHhcCCcEEEEcCCCCCCCchHhHhhh--CCceEEEeeecCCCCCCCCCCHHHHHHHHHHHHhcC-CCcEEEEcCCC
Q 028110 76 SFLQTLRLRSIIYLCPEPYPEANTEFLKS--NGIKLFQFAIEGHKEPFVNIPEDMIREALKVLLDVR-NHPVLIHCKRG 151 (213)
Q Consensus 76 ~~L~~lGIktVI~Lr~e~~~~~~~~~~~~--~Gi~~~~ipi~d~~~p~~~i~~~~i~~al~~i~d~~-~~PVLVHC~~G 151 (213)
..|.+.|.+.|+.-|.++..+...+.+.. .+.+...++++-. ..+.+.++++.+.+.- .--++|||.+.
T Consensus 25 ~~l~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~-------~~~~~~~~~~~~~~~~g~id~li~~ag~ 96 (260)
T PRK07063 25 RAFAREGAAVALADLDAALAERAAAAIARDVAGARVLAVPADVT-------DAASVAAAVAAAEEAFGPLDVLVNNAGI 96 (260)
T ss_pred HHHHHCCCEEEEEeCCHHHHHHHHHHHHhccCCceEEEEEccCC-------CHHHHHHHHHHHHHHhCCCcEEEECCCc
Confidence 56778898866654443211111122222 2334333333221 2467777888776532 34599999753
No 239
>PRK06123 short chain dehydrogenase; Provisional
Probab=25.71 E-value=2.6e+02 Score=22.66 Aligned_cols=69 Identities=9% Similarity=0.004 Sum_probs=35.2
Q ss_pred HHHHhcCCcEEEEcCCCC-CCCchHhHhhhCCceEEEeeecCCCCCCCCCCHHHHHHHHHHHHhcCCC-cEEEEcCCC
Q 028110 76 SFLQTLRLRSIIYLCPEP-YPEANTEFLKSNGIKLFQFAIEGHKEPFVNIPEDMIREALKVLLDVRNH-PVLIHCKRG 151 (213)
Q Consensus 76 ~~L~~lGIktVI~Lr~e~-~~~~~~~~~~~~Gi~~~~ipi~d~~~p~~~i~~~~i~~al~~i~d~~~~-PVLVHC~~G 151 (213)
..|.+.|.+.|+..+..+ ........++..|.+...++++-. ..+.+.++++.+.+..+. -++|||.+.
T Consensus 20 ~~l~~~G~~vv~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dl~-------~~~~~~~~~~~~~~~~~~id~li~~ag~ 90 (248)
T PRK06123 20 LLAAERGYAVCLNYLRNRDAAEAVVQAIRRQGGEALAVAADVA-------DEADVLRLFEAVDRELGRLDALVNNAGI 90 (248)
T ss_pred HHHHHCCCeEEEecCCCHHHHHHHHHHHHhCCCcEEEEEeccC-------CHHHHHHHHHHHHHHhCCCCEEEECCCC
Confidence 456677877555543321 111122223444544444443322 135677777776553222 389999764
No 240
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=25.66 E-value=4.4e+02 Score=25.16 Aligned_cols=38 Identities=11% Similarity=0.042 Sum_probs=26.2
Q ss_pred HHHHHhcCCcEEEEcCCCCCCCchHhHhhh-CCceEEEee
Q 028110 75 FSFLQTLRLRSIIYLCPEPYPEANTEFLKS-NGIKLFQFA 113 (213)
Q Consensus 75 ~~~L~~lGIktVI~Lr~e~~~~~~~~~~~~-~Gi~~~~ip 113 (213)
+..|+++||++|+-+-..... .+.+.+.+ .||+++...
T Consensus 20 ~~~L~~~GV~~vFgvpG~~~~-~l~dal~~~~~i~~i~~~ 58 (564)
T PRK08155 20 VRLLERQGIRIVTGIPGGAIL-PLYDALSQSTQIRHILAR 58 (564)
T ss_pred HHHHHHcCCCEEEeCCCcccH-HHHHHHhccCCceEEEec
Confidence 478999999999999876432 23333433 478888754
No 241
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=25.63 E-value=2.9e+02 Score=22.30 Aligned_cols=71 Identities=11% Similarity=-0.005 Sum_probs=35.1
Q ss_pred HHHHHhcCCcEEEEcCCCCCCCchHhHhhhCCceEEEeeecCCCCCCCCCCHHHHHHHHHHHHhcC-CCcEEEEcCCCC
Q 028110 75 FSFLQTLRLRSIIYLCPEPYPEANTEFLKSNGIKLFQFAIEGHKEPFVNIPEDMIREALKVLLDVR-NHPVLIHCKRGK 152 (213)
Q Consensus 75 ~~~L~~lGIktVI~Lr~e~~~~~~~~~~~~~Gi~~~~ipi~d~~~p~~~i~~~~i~~al~~i~d~~-~~PVLVHC~~Gk 152 (213)
...|.+.|.+.++--|...........+...+-+...+..+- . ..+.+.++++.+.+.- .--++|||.+..
T Consensus 23 ~~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl-~------~~~~~~~~~~~~~~~~~~~d~vi~~ag~~ 94 (251)
T PRK12826 23 AVRLAADGAEVIVVDICGDDAAATAELVEAAGGKARARQVDV-R------DRAALKAAVAAGVEDFGRLDILVANAGIF 94 (251)
T ss_pred HHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCC-C------CHHHHHHHHHHHHHHhCCCCEEEECCCCC
Confidence 356677788655544543211112222333443333223221 1 2456777777665432 335899997543
No 242
>PRK08278 short chain dehydrogenase; Provisional
Probab=25.41 E-value=3.5e+02 Score=22.71 Aligned_cols=69 Identities=9% Similarity=-0.001 Sum_probs=37.9
Q ss_pred HHHHhcCCcEEEEcCCCCCCC-------chHhHhhhCCceEEEeeecCCCCCCCCCCHHHHHHHHHHHHhcC-CCcEEEE
Q 028110 76 SFLQTLRLRSIIYLCPEPYPE-------ANTEFLKSNGIKLFQFAIEGHKEPFVNIPEDMIREALKVLLDVR-NHPVLIH 147 (213)
Q Consensus 76 ~~L~~lGIktVI~Lr~e~~~~-------~~~~~~~~~Gi~~~~ipi~d~~~p~~~i~~~~i~~al~~i~d~~-~~PVLVH 147 (213)
..|.+.|.+.|+.-|..+... ...+.+...|.+.+.+.++-. ..+.+.++++.+.+.- .--++||
T Consensus 24 ~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~D~~-------~~~~i~~~~~~~~~~~g~id~li~ 96 (273)
T PRK08278 24 LRAARDGANIVIAAKTAEPHPKLPGTIHTAAEEIEAAGGQALPLVGDVR-------DEDQVAAAVAKAVERFGGIDICVN 96 (273)
T ss_pred HHHHHCCCEEEEEecccccccchhhHHHHHHHHHHhcCCceEEEEecCC-------CHHHHHHHHHHHHHHhCCCCEEEE
Confidence 467788988776655532111 111223344545444443332 2467877887766532 3359999
Q ss_pred cCCC
Q 028110 148 CKRG 151 (213)
Q Consensus 148 C~~G 151 (213)
|.+.
T Consensus 97 ~ag~ 100 (273)
T PRK08278 97 NASA 100 (273)
T ss_pred CCCC
Confidence 9754
No 243
>PRK06882 acetolactate synthase 3 catalytic subunit; Validated
Probab=25.32 E-value=4e+02 Score=25.47 Aligned_cols=38 Identities=8% Similarity=-0.000 Sum_probs=25.6
Q ss_pred HHHHHhcCCcEEEEcCCCCCCCchHhHhhh-CCceEEEee
Q 028110 75 FSFLQTLRLRSIIYLCPEPYPEANTEFLKS-NGIKLFQFA 113 (213)
Q Consensus 75 ~~~L~~lGIktVI~Lr~e~~~~~~~~~~~~-~Gi~~~~ip 113 (213)
...|+++||++|+-+-..... ...+.+.+ .||+++...
T Consensus 11 ~~~L~~~GV~~vFg~pG~~~~-~l~~al~~~~~i~~v~~~ 49 (574)
T PRK06882 11 VQSLRDEGVEYVFGYPGGSVL-DIYDAIHTLGGIEHVLVR 49 (574)
T ss_pred HHHHHHcCCCEEEeCCCcchH-HHHHHHhhcCCCeEEEec
Confidence 478999999999998776432 22333344 478888653
No 244
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=25.30 E-value=4.4e+02 Score=22.70 Aligned_cols=56 Identities=14% Similarity=0.231 Sum_probs=25.3
Q ss_pred hCCceEEEeeecCCCCCCCCCCHH-H---HHHHHHHHHhcCCCcEEEEcCCCCChHHHHHHHHH
Q 028110 104 SNGIKLFQFAIEGHKEPFVNIPED-M---IREALKVLLDVRNHPVLIHCKRGKHRTGCLVGCLR 163 (213)
Q Consensus 104 ~~Gi~~~~ipi~d~~~p~~~i~~~-~---i~~al~~i~d~~~~PVLVHC~~Gk~RTG~vva~yl 163 (213)
+.|..++.+...+.......++.+ . +..+++.+.+..+-||-+|. .+..++-+++.
T Consensus 34 ~~GA~iIDIG~~st~p~~~~i~~~~E~~rl~~~v~~~~~~~~~plsiDT----~~~~vi~~al~ 93 (257)
T TIGR01496 34 EEGADIIDVGGESTRPGADRVSPEEELNRVVPVIKALRDQPDVPISVDT----YRAEVARAALE 93 (257)
T ss_pred HCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEeC----CCHHHHHHHHH
Confidence 467777777543321111112221 2 44444444432256666664 34445544443
No 245
>PRK07789 acetolactate synthase 1 catalytic subunit; Validated
Probab=25.14 E-value=4.4e+02 Score=25.56 Aligned_cols=38 Identities=11% Similarity=0.004 Sum_probs=26.1
Q ss_pred HHHHHhcCCcEEEEcCCCCCCCchHhHhh-hCCceEEEee
Q 028110 75 FSFLQTLRLRSIIYLCPEPYPEANTEFLK-SNGIKLFQFA 113 (213)
Q Consensus 75 ~~~L~~lGIktVI~Lr~e~~~~~~~~~~~-~~Gi~~~~ip 113 (213)
...|+++||++|+-+-..... ...+.+. ..||+++...
T Consensus 38 ~~~L~~~GV~~vFgipG~~~~-~l~dal~~~~~i~~v~~r 76 (612)
T PRK07789 38 VRSLEELGVDVVFGIPGGAIL-PVYDPLFDSTKVRHVLVR 76 (612)
T ss_pred HHHHHHCCCCEEEEcCCcchH-HHHHHHhccCCceEEEec
Confidence 479999999999999876432 2233333 3488888754
No 246
>cd06831 PLPDE_III_ODC_like_AZI Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Ornithine Decarboxylase-like Antizyme Inhibitor. Antizyme inhibitor (AZI) is homologous to the fold type III PLP-dependent enzyme ODC but does not retain any decarboxylase activity. Like ODC, AZI is presumed to exist as a homodimer. Antizyme is a regulatory protein that binds directly to the ODC monomer to block its active site, leading to its degradation by the 26S proteasome. AZI binds to Antizyme with a higher affinity than ODC, preventing the formation of the Antizyme-ODC complex. Thus, AZI blocks the ability of Antizyme to promote ODC degradation, which leads to increased ODC enzymatic activity and polyamine levels. AZI also prevents the degradation of other proteins regulated by Antizyme, such as cyclin D1.
Probab=25.14 E-value=3.3e+02 Score=25.01 Aligned_cols=89 Identities=9% Similarity=0.036 Sum_probs=46.8
Q ss_pred eEEcCCCChhcHHHHHhcCCcEEEEcCCCCCCCchHhHhhhCCceEEEeeecCCCC-----CCCCCCHHHHHHHHHHHHh
Q 028110 64 IFRSGFPDSANFSFLQTLRLRSIIYLCPEPYPEANTEFLKSNGIKLFQFAIEGHKE-----PFVNIPEDMIREALKVLLD 138 (213)
Q Consensus 64 Lyrs~~p~~~~~~~L~~lGIktVI~Lr~e~~~~~~~~~~~~~Gi~~~~ipi~d~~~-----p~~~i~~~~i~~al~~i~d 138 (213)
+|-+..-+..++.+..+.||++| ++-+...-....+......+ .+++...+... ....++.+.+.++++.+.+
T Consensus 84 if~gp~K~~~~l~~a~~~Gv~~i-~vDS~~El~~i~~~~~~~~v-~lRi~~~~~~~~~~~~~KFGi~~~~~~~~l~~~~~ 161 (394)
T cd06831 84 IYTNPCKQASQIKYAAKVGVNIM-TCDNEIELKKIARNHPNAKL-LLHIATEDNIGGEEMNMKFGTTLKNCRHLLECAKE 161 (394)
T ss_pred EEeCCCCCHHHHHHHHHCCCCEE-EECCHHHHHHHHHhCCCCcE-EEEEeccCCCCCCccCCCCCCCHHHHHHHHHHHHH
Confidence 55555556678888888999765 34433111111111111121 22332222111 1124567777778877766
Q ss_pred cCCCcEEEEcCCCCCh
Q 028110 139 VRNHPVLIHCKRGKHR 154 (213)
Q Consensus 139 ~~~~PVLVHC~~Gk~R 154 (213)
..-..+-+||+.|..-
T Consensus 162 ~~l~~~Gih~HiGS~~ 177 (394)
T cd06831 162 LDVQIVGVKFHVSSSC 177 (394)
T ss_pred CCCeEEEEEEECCCCC
Confidence 4335688888888653
No 247
>PRK06172 short chain dehydrogenase; Provisional
Probab=25.13 E-value=2.6e+02 Score=22.90 Aligned_cols=69 Identities=4% Similarity=-0.025 Sum_probs=36.0
Q ss_pred HHHHhcCCcEEEEcCCCCCCCchHhHhhhCCceEEEeeecCCCCCCCCCCHHHHHHHHHHHHhcC-CCcEEEEcCCC
Q 028110 76 SFLQTLRLRSIIYLCPEPYPEANTEFLKSNGIKLFQFAIEGHKEPFVNIPEDMIREALKVLLDVR-NHPVLIHCKRG 151 (213)
Q Consensus 76 ~~L~~lGIktVI~Lr~e~~~~~~~~~~~~~Gi~~~~ipi~d~~~p~~~i~~~~i~~al~~i~d~~-~~PVLVHC~~G 151 (213)
..|.+.|.+.++--|.........+.++..+-+...+..+-. ..+.+.++++.+.+.- .-.++|||.+.
T Consensus 25 ~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~-------~~~~i~~~~~~~~~~~g~id~li~~ag~ 94 (253)
T PRK06172 25 LAFAREGAKVVVADRDAAGGEETVALIREAGGEALFVACDVT-------RDAEVKALVEQTIAAYGRLDYAFNNAGI 94 (253)
T ss_pred HHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCC-------CHHHHHHHHHHHHHHhCCCCEEEECCCC
Confidence 467778987665555432111122223334434333333222 2456777777665532 23599999864
No 248
>PRK07806 short chain dehydrogenase; Provisional
Probab=24.88 E-value=3.4e+02 Score=22.02 Aligned_cols=71 Identities=7% Similarity=0.029 Sum_probs=37.2
Q ss_pred HHHHHhcCCcEEEEcCCCCC-CCchHhHhhhCCceEEEeeecCCCCCCCCCCHHHHHHHHHHHHhcC-CCcEEEEcCCCC
Q 028110 75 FSFLQTLRLRSIIYLCPEPY-PEANTEFLKSNGIKLFQFAIEGHKEPFVNIPEDMIREALKVLLDVR-NHPVLIHCKRGK 152 (213)
Q Consensus 75 ~~~L~~lGIktVI~Lr~e~~-~~~~~~~~~~~Gi~~~~ipi~d~~~p~~~i~~~~i~~al~~i~d~~-~~PVLVHC~~Gk 152 (213)
...|.+.|.+.++..|.... .......++..|.+...+..+-. ..+.+.++++.+.+.- .-.++|||.++.
T Consensus 23 ~~~l~~~G~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~-------~~~~~~~~~~~~~~~~~~~d~vi~~ag~~ 95 (248)
T PRK07806 23 AKILAGAGAHVVVNYRQKAPRANKVVAEIEAAGGRASAVGADLT-------DEESVAALMDTAREEFGGLDALVLNASGG 95 (248)
T ss_pred HHHHHHCCCEEEEEeCCchHhHHHHHHHHHhcCCceEEEEcCCC-------CHHHHHHHHHHHHHhCCCCcEEEECCCCC
Confidence 35677789876665554321 11112223333444444433321 2467777777765432 235899998653
No 249
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=24.84 E-value=2.2e+02 Score=23.57 Aligned_cols=68 Identities=16% Similarity=0.128 Sum_probs=34.3
Q ss_pred HHHHhcCCcEEEEcCCCCCCCchHhHhhhCCceEEEeeecCCCCCCCCCCHHHHHHHHHHHHhcC-CCcEEEEcCCC
Q 028110 76 SFLQTLRLRSIIYLCPEPYPEANTEFLKSNGIKLFQFAIEGHKEPFVNIPEDMIREALKVLLDVR-NHPVLIHCKRG 151 (213)
Q Consensus 76 ~~L~~lGIktVI~Lr~e~~~~~~~~~~~~~Gi~~~~ipi~d~~~p~~~i~~~~i~~al~~i~d~~-~~PVLVHC~~G 151 (213)
..|.+.|.+.++.-|.+.......+.++..+ +...++++-. +.+.+.++++.+.+.- +--++|||.+.
T Consensus 18 ~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~Dv~-------d~~~~~~~~~~~~~~~g~id~li~naG~ 86 (259)
T PRK08340 18 RELLKKGARVVISSRNEENLEKALKELKEYG-EVYAVKADLS-------DKDDLKNLVKEAWELLGGIDALVWNAGN 86 (259)
T ss_pred HHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC-CceEEEcCCC-------CHHHHHHHHHHHHHhcCCCCEEEECCCC
Confidence 4667789876665444321111112222223 2222232221 2467888887776532 33599999764
No 250
>cd02012 TPP_TK Thiamine pyrophosphate (TPP) family, Transketolase (TK) subfamily, TPP-binding module; TK catalyzes the transfer of a two-carbon unit from ketose phosphates to aldose phosphates. In heterotrophic organisms, TK provides a link between glycolysis and the pentose phosphate pathway and provides precursors for nucleotide, aromatic amino acid and vitamin biosynthesis. In addition, the enzyme plays a central role in the Calvin cycle in plants. Typically, TKs are homodimers. They require TPP and divalent cations, such as magnesium ions, for activity.
Probab=24.69 E-value=1.9e+02 Score=24.61 Aligned_cols=49 Identities=22% Similarity=0.323 Sum_probs=32.8
Q ss_pred chHhHhhhCCceEEEeeecCCCCCCCCCCHHHHHHHHHHHHhcCCCcEEEEcCCCCCh
Q 028110 97 ANTEFLKSNGIKLFQFAIEGHKEPFVNIPEDMIREALKVLLDVRNHPVLIHCKRGKHR 154 (213)
Q Consensus 97 ~~~~~~~~~Gi~~~~ipi~d~~~p~~~i~~~~i~~al~~i~d~~~~PVLVHC~~Gk~R 154 (213)
.....++..|.+++. +.++ +.+.+.++++...+..++|++|+|..-+++
T Consensus 182 ~~~~~~~a~G~~~~~--v~G~-------d~~~l~~al~~a~~~~~~P~~I~~~t~kg~ 230 (255)
T cd02012 182 DLAKKFEAFGWNVIE--VDGH-------DVEEILAALEEAKKSKGKPTLIIAKTIKGK 230 (255)
T ss_pred hHHHHHHHcCCeEEE--ECCC-------CHHHHHHHHHHHHHcCCCCEEEEEEeeccc
Confidence 345566778887663 4443 246777788776653478999999876654
No 251
>PRK07109 short chain dehydrogenase; Provisional
Probab=24.69 E-value=2.2e+02 Score=25.11 Aligned_cols=69 Identities=7% Similarity=-0.022 Sum_probs=39.0
Q ss_pred HHHHhcCCcEEEEcCCCCCCCchHhHhhhCCceEEEeeecCCCCCCCCCCHHHHHHHHHHHHhcC-CCcEEEEcCCC
Q 028110 76 SFLQTLRLRSIIYLCPEPYPEANTEFLKSNGIKLFQFAIEGHKEPFVNIPEDMIREALKVLLDVR-NHPVLIHCKRG 151 (213)
Q Consensus 76 ~~L~~lGIktVI~Lr~e~~~~~~~~~~~~~Gi~~~~ipi~d~~~p~~~i~~~~i~~al~~i~d~~-~~PVLVHC~~G 151 (213)
..|.+.|.+.|+.-|.++.-+...+.++..|.+...++++-. +.+.+.++++.+.+.- .--++|||.+.
T Consensus 26 ~~la~~G~~Vvl~~R~~~~l~~~~~~l~~~g~~~~~v~~Dv~-------d~~~v~~~~~~~~~~~g~iD~lInnAg~ 95 (334)
T PRK07109 26 RAFARRGAKVVLLARGEEGLEALAAEIRAAGGEALAVVADVA-------DAEAVQAAADRAEEELGPIDTWVNNAMV 95 (334)
T ss_pred HHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEecCC-------CHHHHHHHHHHHHHHCCCCCEEEECCCc
Confidence 567778987666555432111222333445655555554332 2467887877776532 33599999764
No 252
>COG0787 Alr Alanine racemase [Cell envelope biogenesis, outer membrane]
Probab=24.64 E-value=1.9e+02 Score=26.58 Aligned_cols=73 Identities=14% Similarity=0.066 Sum_probs=45.6
Q ss_pred cHHHHHhcCCc--EEEEcCCCCCCCchHhHhhhCCceEEEeeecCCCCCCCCCCHHHHHHHHHHHHhcCCCcEEEEcCCC
Q 028110 74 NFSFLQTLRLR--SIIYLCPEPYPEANTEFLKSNGIKLFQFAIEGHKEPFVNIPEDMIREALKVLLDVRNHPVLIHCKRG 151 (213)
Q Consensus 74 ~~~~L~~lGIk--tVI~Lr~e~~~~~~~~~~~~~Gi~~~~ipi~d~~~p~~~i~~~~i~~al~~i~d~~~~PVLVHC~~G 151 (213)
+--.|++.|++ .|+-|..-...... +++.++++...- . +.++++...+.......-+|.++=-.|
T Consensus 65 EAi~LR~~gi~~~~IlvL~g~~~~~~~-~~~~~~~l~~~v---~---------s~~ql~~l~~~~~~~~~l~vhLkiDTG 131 (360)
T COG0787 65 EAIELREAGITGAPILVLEGFFPAEEL-ELAAAYNLTPVV---N---------SLEQLEALKNAALKNKPLKVHLKIDTG 131 (360)
T ss_pred HHHHHHHcCCCCCCEEEEcCcCChhhH-HHHHHcCCeEEE---C---------CHHHHHHHHHhhhhcCceEEEEEECCC
Confidence 34688999999 48888754222222 456667764431 1 256777555444432346788888899
Q ss_pred CChHHHHH
Q 028110 152 KHRTGCLV 159 (213)
Q Consensus 152 k~RTG~vv 159 (213)
++|-|+-.
T Consensus 132 M~RlG~~~ 139 (360)
T COG0787 132 MNRLGLRP 139 (360)
T ss_pred CCcCCCCh
Confidence 99998653
No 253
>cd00158 RHOD Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.
Probab=24.62 E-value=2.2e+02 Score=18.87 Aligned_cols=27 Identities=19% Similarity=0.504 Sum_probs=17.6
Q ss_pred cCCCcEEEEcCCCCChHHHHHHHHHHHCC
Q 028110 139 VRNHPVLIHCKRGKHRTGCLVGCLRKLQK 167 (213)
Q Consensus 139 ~~~~PVLVHC~~Gk~RTG~vva~yl~~~g 167 (213)
..+.+|+++|..|. |+.. ++.++...|
T Consensus 48 ~~~~~vv~~c~~~~-~a~~-~~~~l~~~G 74 (89)
T cd00158 48 DKDKPIVVYCRSGN-RSAR-AAKLLRKAG 74 (89)
T ss_pred CCCCeEEEEeCCCc-hHHH-HHHHHHHhC
Confidence 46789999999974 5544 444444444
No 254
>PLN03228 methylthioalkylmalate synthase; Provisional
Probab=24.45 E-value=3.3e+02 Score=26.25 Aligned_cols=73 Identities=12% Similarity=0.085 Sum_probs=41.7
Q ss_pred HHHHHhcCCcEEEEcCCCCCC---C---chHhHhhhCCceEEEeeecCCCCCCCCCCHHHHHHHHHHHHhcC----CCcE
Q 028110 75 FSFLQTLRLRSIIYLCPEPYP---E---ANTEFLKSNGIKLFQFAIEGHKEPFVNIPEDMIREALKVLLDVR----NHPV 144 (213)
Q Consensus 75 ~~~L~~lGIktVI~Lr~e~~~---~---~~~~~~~~~Gi~~~~ipi~d~~~p~~~i~~~~i~~al~~i~d~~----~~PV 144 (213)
+.+.+++|...|..-++.... + ...+.+.+.|...+.++-... -..+..+.+.++.+.+.- +-|+
T Consensus 215 V~~Ak~~G~~~v~f~~EDa~Rtd~efl~~~~~~a~~~Gad~I~l~DTvG-----~~tP~~v~~lV~~l~~~~~~~~~i~I 289 (503)
T PLN03228 215 IRYAKSLGFHDIQFGCEDGGRSDKEFLCKILGEAIKAGATSVGIADTVG-----INMPHEFGELVTYVKANTPGIDDIVF 289 (503)
T ss_pred HHHHHHcCCceEEeccccccccCHHHHHHHHHHHHhcCCCEEEEecCCC-----CCCHHHHHHHHHHHHHHhccccCcee
Confidence 357778898744433333111 1 122334568998876653322 124567887888776531 3578
Q ss_pred EEEcCCCC
Q 028110 145 LIHCKRGK 152 (213)
Q Consensus 145 LVHC~~Gk 152 (213)
-+||+.-.
T Consensus 290 ~~H~HND~ 297 (503)
T PLN03228 290 SVHCHNDL 297 (503)
T ss_pred EecccCCc
Confidence 89987643
No 255
>COG1660 Predicted P-loop-containing kinase [General function prediction only]
Probab=24.40 E-value=1.1e+02 Score=27.33 Aligned_cols=34 Identities=24% Similarity=0.464 Sum_probs=21.6
Q ss_pred HHHHHHHHHHh--cCCC----cEEEEcCCCCChHHHHHHH
Q 028110 128 MIREALKVLLD--VRNH----PVLIHCKRGKHRTGCLVGC 161 (213)
Q Consensus 128 ~i~~al~~i~d--~~~~----PVLVHC~~Gk~RTG~vva~ 161 (213)
++...++.++. .+++ -|-|=|++|++|+-.++=.
T Consensus 224 ~l~~~l~~~LP~y~~egks~lTIaIGCTGGqHRSV~iae~ 263 (286)
T COG1660 224 KLRDLLEFWLPRYEKEGKSYLTIAIGCTGGQHRSVYIAEQ 263 (286)
T ss_pred HHHHHHHHHhHHHHhcCCeEEEEEEccCCCccchHHHHHH
Confidence 34455555553 1222 3889999999999666533
No 256
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=24.24 E-value=1.2e+02 Score=27.03 Aligned_cols=17 Identities=29% Similarity=0.698 Sum_probs=14.7
Q ss_pred cEEEEcCCCCChHHHHH
Q 028110 143 PVLIHCKRGKHRTGCLV 159 (213)
Q Consensus 143 PVLVHC~~Gk~RTG~vv 159 (213)
-|-|=|++|++|+-+++
T Consensus 244 tIaiGCTGG~HRSV~ia 260 (284)
T PF03668_consen 244 TIAIGCTGGQHRSVAIA 260 (284)
T ss_pred EEEEEcCCCcCcHHHHH
Confidence 48899999999997766
No 257
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=24.02 E-value=3.2e+02 Score=22.39 Aligned_cols=70 Identities=17% Similarity=0.085 Sum_probs=37.6
Q ss_pred HHHHhcCCcEEEEcCCCCCCCchHhHhhhCCceEEEeeecCCCCCCCCCCHHHHHHHHHHHHhc-CCCcEEEEcCCCC
Q 028110 76 SFLQTLRLRSIIYLCPEPYPEANTEFLKSNGIKLFQFAIEGHKEPFVNIPEDMIREALKVLLDV-RNHPVLIHCKRGK 152 (213)
Q Consensus 76 ~~L~~lGIktVI~Lr~e~~~~~~~~~~~~~Gi~~~~ipi~d~~~p~~~i~~~~i~~al~~i~d~-~~~PVLVHC~~Gk 152 (213)
..|.+.|.+.|+.-|..+......+.++..+.+...++++-. +.+.+.++++.+.+. ..--++|||....
T Consensus 27 ~~L~~~G~~vvl~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~-------~~~~~~~~~~~~~~~~~~id~vi~~ag~~ 97 (254)
T PRK08085 27 TGLAEYGAEIIINDITAERAELAVAKLRQEGIKAHAAPFNVT-------HKQEVEAAIEHIEKDIGPIDVLINNAGIQ 97 (254)
T ss_pred HHHHHcCCEEEEEcCCHHHHHHHHHHHHhcCCeEEEEecCCC-------CHHHHHHHHHHHHHhcCCCCEEEECCCcC
Confidence 566778987776655432111112223334444444444322 246777777777653 2345999998643
No 258
>PRK07062 short chain dehydrogenase; Provisional
Probab=23.90 E-value=3.4e+02 Score=22.38 Aligned_cols=69 Identities=12% Similarity=0.015 Sum_probs=36.0
Q ss_pred HHHHhcCCcEEEEcCCCCCCCchHhHhhhC--CceEEEeeecCCCCCCCCCCHHHHHHHHHHHHhcC-CCcEEEEcCCC
Q 028110 76 SFLQTLRLRSIIYLCPEPYPEANTEFLKSN--GIKLFQFAIEGHKEPFVNIPEDMIREALKVLLDVR-NHPVLIHCKRG 151 (213)
Q Consensus 76 ~~L~~lGIktVI~Lr~e~~~~~~~~~~~~~--Gi~~~~ipi~d~~~p~~~i~~~~i~~al~~i~d~~-~~PVLVHC~~G 151 (213)
..|.+.|.+.|+.-|..+......+.+... +.+...++++-. ..+.+.++++.+.+.- .--++|||.+.
T Consensus 26 ~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~-------~~~~v~~~~~~~~~~~g~id~li~~Ag~ 97 (265)
T PRK07062 26 ELLLEAGASVAICGRDEERLASAEARLREKFPGARLLAARCDVL-------DEADVAAFAAAVEARFGGVDMLVNNAGQ 97 (265)
T ss_pred HHHHHCCCeEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEecCC-------CHHHHHHHHHHHHHhcCCCCEEEECCCC
Confidence 466778998766656532111111112221 334444444322 2467877887776532 23489999653
No 259
>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=23.79 E-value=3.4e+02 Score=21.75 Aligned_cols=69 Identities=12% Similarity=0.006 Sum_probs=37.2
Q ss_pred HHHHhcCCcEEEEcCCCCC-CCchHhHhhhCCceEEEeeecCCCCCCCCCCHHHHHHHHHHHHhcC-CCcEEEEcCCC
Q 028110 76 SFLQTLRLRSIIYLCPEPY-PEANTEFLKSNGIKLFQFAIEGHKEPFVNIPEDMIREALKVLLDVR-NHPVLIHCKRG 151 (213)
Q Consensus 76 ~~L~~lGIktVI~Lr~e~~-~~~~~~~~~~~Gi~~~~ipi~d~~~p~~~i~~~~i~~al~~i~d~~-~~PVLVHC~~G 151 (213)
..|.+.|.+.++-.+.... .....+.+...+-++..++.+-. ..+.+.++++.+.+.- +--++|||.+.
T Consensus 23 ~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~-------~~~~~~~~~~~~~~~~~~id~vi~~ag~ 93 (248)
T PRK05557 23 ERLAAQGANVVINYASSEAGAEALVAEIGALGGKALAVQGDVS-------DAESVERAVDEAKAEFGGVDILVNNAGI 93 (248)
T ss_pred HHHHHCCCEEEEEeCCchhHHHHHHHHHHhcCCceEEEEcCCC-------CHHHHHHHHHHHHHHcCCCCEEEECCCc
Confidence 4566779887566654321 11222223334545554443322 2456777777766532 23489999865
No 260
>PRK07024 short chain dehydrogenase; Provisional
Probab=23.77 E-value=2.4e+02 Score=23.32 Aligned_cols=26 Identities=15% Similarity=0.112 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHhcCC-CcEEEEcCCC
Q 028110 126 EDMIREALKVLLDVRN-HPVLIHCKRG 151 (213)
Q Consensus 126 ~~~i~~al~~i~d~~~-~PVLVHC~~G 151 (213)
.+.+.++++.+.+..+ --++|||.+.
T Consensus 62 ~~~i~~~~~~~~~~~g~id~lv~~ag~ 88 (257)
T PRK07024 62 ADALAAAAADFIAAHGLPDVVIANAGI 88 (257)
T ss_pred HHHHHHHHHHHHHhCCCCCEEEECCCc
Confidence 4678888887765333 2599999754
No 261
>PRK08199 thiamine pyrophosphate protein; Validated
Probab=23.76 E-value=4.9e+02 Score=24.79 Aligned_cols=38 Identities=16% Similarity=0.217 Sum_probs=25.5
Q ss_pred HHHHHhcCCcEEEEcCCCCCCCchHhHhhhC-CceEEEee
Q 028110 75 FSFLQTLRLRSIIYLCPEPYPEANTEFLKSN-GIKLFQFA 113 (213)
Q Consensus 75 ~~~L~~lGIktVI~Lr~e~~~~~~~~~~~~~-Gi~~~~ip 113 (213)
+..|+++||++|+-+-..... ...+.+.+. +|+++...
T Consensus 15 ~~~L~~~GV~~vFg~pG~~~~-~l~~al~~~~~i~~v~~r 53 (557)
T PRK08199 15 VDALRANGVERVFCVPGESYL-AVLDALHDETDIRVIVCR 53 (557)
T ss_pred HHHHHHcCCCEEEeCCCcchh-HHHHHhhccCCCcEEEec
Confidence 478999999999999776432 233334333 58887654
No 262
>PLN02449 ferrochelatase
Probab=23.70 E-value=1.8e+02 Score=27.95 Aligned_cols=44 Identities=14% Similarity=0.050 Sum_probs=31.9
Q ss_pred cHHHHHhcCCcEEEEcCCCCC----------CCchHhHhhhCCc-eEEEeeecCC
Q 028110 74 NFSFLQTLRLRSIIYLCPEPY----------PEANTEFLKSNGI-KLFQFAIEGH 117 (213)
Q Consensus 74 ~~~~L~~lGIktVI~Lr~e~~----------~~~~~~~~~~~Gi-~~~~ipi~d~ 117 (213)
-+..|.+.|+|.|+-....-. .-...+.+++.|+ .|..+|..+.
T Consensus 343 ~L~~L~~~Gvk~VlvvPigFvSDhiETL~EiDiE~re~a~e~G~~~~~rVP~LN~ 397 (485)
T PLN02449 343 TIVELGKKGVKSLLAVPISFVSEHIETLEEIDMEYRELALESGIENWGRVPALGC 397 (485)
T ss_pred HHHHHHHcCCCeEEEECCcccccchHHHHHHHHHHHHHHHHcCCceEEEcCCCCC
Confidence 467888999999988875311 1234566788999 5888998775
No 263
>PRK09134 short chain dehydrogenase; Provisional
Probab=23.63 E-value=3.8e+02 Score=22.05 Aligned_cols=69 Identities=10% Similarity=-0.005 Sum_probs=35.2
Q ss_pred HHHHhcCCcEEEEcCCCC-CCCchHhHhhhCCceEEEeeecCCCCCCCCCCHHHHHHHHHHHHhcC-CCcEEEEcCCC
Q 028110 76 SFLQTLRLRSIIYLCPEP-YPEANTEFLKSNGIKLFQFAIEGHKEPFVNIPEDMIREALKVLLDVR-NHPVLIHCKRG 151 (213)
Q Consensus 76 ~~L~~lGIktVI~Lr~e~-~~~~~~~~~~~~Gi~~~~ipi~d~~~p~~~i~~~~i~~al~~i~d~~-~~PVLVHC~~G 151 (213)
..|.+.|.+.++..+... ........+...|-+..-++.+-. ..+.+.++++.+.... .--++|||.+.
T Consensus 27 ~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~-------d~~~~~~~~~~~~~~~~~iD~vi~~ag~ 97 (258)
T PRK09134 27 LDLAAHGFDVAVHYNRSRDEAEALAAEIRALGRRAVALQADLA-------DEAEVRALVARASAALGPITLLVNNASL 97 (258)
T ss_pred HHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCeEEEEEcCCC-------CHHHHHHHHHHHHHHcCCCCEEEECCcC
Confidence 567788987777655431 111112222233433333333221 1356777777665432 23599999864
No 264
>PRK07064 hypothetical protein; Provisional
Probab=23.40 E-value=5.6e+02 Score=24.23 Aligned_cols=38 Identities=8% Similarity=0.071 Sum_probs=24.7
Q ss_pred HHHHHhcCCcEEEEcCCCCCCCchHhHhh-hCCceEEEee
Q 028110 75 FSFLQTLRLRSIIYLCPEPYPEANTEFLK-SNGIKLFQFA 113 (213)
Q Consensus 75 ~~~L~~lGIktVI~Lr~e~~~~~~~~~~~-~~Gi~~~~ip 113 (213)
+..|+++||++|.-+-..... ...+.+. ..+|+++...
T Consensus 10 ~~~L~~~Gv~~vFgvpG~~~~-~l~~al~~~~~i~~i~~~ 48 (544)
T PRK07064 10 AAFLEQCGVKTAFGVISIHNM-PILDAIGRRGKIRFVPAR 48 (544)
T ss_pred HHHHHHcCCCEEEeCCCCcch-HHHHHHhccCCccEEeec
Confidence 478999999999988765322 2333343 3478887643
No 265
>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional
Probab=23.36 E-value=4e+02 Score=21.84 Aligned_cols=68 Identities=13% Similarity=0.052 Sum_probs=36.3
Q ss_pred HHHHhcCCcEEEEcCCCCCCCchHhHhhhCCceEEEeeecCCCCCCCCCCHHHHHHHHHHHHhcC-CCcEEEEcCCC
Q 028110 76 SFLQTLRLRSIIYLCPEPYPEANTEFLKSNGIKLFQFAIEGHKEPFVNIPEDMIREALKVLLDVR-NHPVLIHCKRG 151 (213)
Q Consensus 76 ~~L~~lGIktVI~Lr~e~~~~~~~~~~~~~Gi~~~~ipi~d~~~p~~~i~~~~i~~al~~i~d~~-~~PVLVHC~~G 151 (213)
..|.+.|.+.|+.-|.+.. ....+.+...|.+...++++-. ..+.+.++++.+.+.. .--++|||.++
T Consensus 26 ~~l~~~G~~v~~~~r~~~~-~~~~~~~~~~~~~~~~~~~D~~-------~~~~~~~~~~~~~~~~~~id~lv~nAg~ 94 (260)
T PRK12823 26 LRAAAEGARVVLVDRSELV-HEVAAELRAAGGEALALTADLE-------TYAGAQAAMAAAVEAFGRIDVLINNVGG 94 (260)
T ss_pred HHHHHCCCEEEEEeCchHH-HHHHHHHHhcCCeEEEEEEeCC-------CHHHHHHHHHHHHHHcCCCeEEEECCcc
Confidence 5677889876665454311 1112223334545444443321 1356777777766532 23499999864
No 266
>cd07038 TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC), indolepyruvate decarboxylase (IPDC) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites, for many
Probab=23.33 E-value=3.8e+02 Score=21.17 Aligned_cols=38 Identities=8% Similarity=0.112 Sum_probs=25.4
Q ss_pred HHHHHhcCCcEEEEcCCCCCCCchHhHhhh-CCceEEEee
Q 028110 75 FSFLQTLRLRSIIYLCPEPYPEANTEFLKS-NGIKLFQFA 113 (213)
Q Consensus 75 ~~~L~~lGIktVI~Lr~e~~~~~~~~~~~~-~Gi~~~~ip 113 (213)
.+.|+++||++|+-+-..... ...+.+.+ .||+++...
T Consensus 4 ~~~L~~~Gi~~vFg~pG~~~~-~l~~al~~~~~i~~i~~r 42 (162)
T cd07038 4 LERLKQLGVKHVFGVPGDYNL-PLLDAIEENPGLRWVGNC 42 (162)
T ss_pred HHHHHHcCCCEEEEeCCccHH-HHHHHHhhcCCceEEeeC
Confidence 367899999999999876432 23334433 378888653
No 267
>PRK08322 acetolactate synthase; Reviewed
Probab=23.30 E-value=5.5e+02 Score=24.27 Aligned_cols=38 Identities=21% Similarity=0.121 Sum_probs=26.7
Q ss_pred HHHHHhcCCcEEEEcCCCCCCCchHhHhhhCCceEEEee
Q 028110 75 FSFLQTLRLRSIIYLCPEPYPEANTEFLKSNGIKLFQFA 113 (213)
Q Consensus 75 ~~~L~~lGIktVI~Lr~e~~~~~~~~~~~~~Gi~~~~ip 113 (213)
+..|+++||++|+-+-..... ...+.+.+.+|+++...
T Consensus 8 ~~~L~~~Gv~~vFg~pG~~~~-~l~dal~~~~i~~i~~~ 45 (547)
T PRK08322 8 VKCLENEGVEYIFGIPGEENL-DLLEALRDSSIKLILTR 45 (547)
T ss_pred HHHHHHcCCCEEEeCCCcchH-HHHHHHHhcCCcEEEec
Confidence 468999999999998776432 23344456788887654
No 268
>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed
Probab=22.81 E-value=6.6e+02 Score=23.83 Aligned_cols=77 Identities=10% Similarity=0.039 Sum_probs=42.3
Q ss_pred HHHHHhcCCcEEEEcCCCCCCCchHhHhhhCCceEEEeeecCCCCCCCCCCHHHHHHHHHHHHhcCCCcEEEEcCCCCCh
Q 028110 75 FSFLQTLRLRSIIYLCPEPYPEANTEFLKSNGIKLFQFAIEGHKEPFVNIPEDMIREALKVLLDVRNHPVLIHCKRGKHR 154 (213)
Q Consensus 75 ~~~L~~lGIktVI~Lr~e~~~~~~~~~~~~~Gi~~~~ipi~d~~~p~~~i~~~~i~~al~~i~d~~~~PVLVHC~~Gk~R 154 (213)
...|+++||++|+-+-..... ..-+.+.+.||+++...=+.. .-.+..... ...++|..+=|+.|-+=
T Consensus 8 ~~~L~~~Gv~~vFg~pG~~~~-~l~~al~~~~i~~v~~~hE~~--------A~~~Adgya---r~sg~~gv~~~t~GpG~ 75 (548)
T PRK08978 8 VHALRAQGVDTVFGYPGGAIM-PVYDALYDGGVEHLLCRHEQG--------AAMAAIGYA---RATGKVGVCIATSGPGA 75 (548)
T ss_pred HHHHHHcCCCEEEeCCCcchH-HHHHHHHhcCCeEEEeccHHH--------HHHHHHHHH---HHhCCCEEEEECCCCcH
Confidence 468999999999999876432 233344456888876431110 011111111 12345655556666666
Q ss_pred HHHHHHHHH
Q 028110 155 TGCLVGCLR 163 (213)
Q Consensus 155 TG~vva~yl 163 (213)
+.++.+++-
T Consensus 76 ~n~~~~l~~ 84 (548)
T PRK08978 76 TNLITGLAD 84 (548)
T ss_pred HHHHHHHHH
Confidence 665555554
No 269
>TIGR01838 PHA_synth_I poly(R)-hydroxyalkanoic acid synthase, class I. This model represents the class I subfamily of poly(R)-hydroxyalkanoate synthases, which polymerizes hydroxyacyl-CoAs with three to five carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of cell.
Probab=22.76 E-value=4e+02 Score=25.80 Aligned_cols=65 Identities=18% Similarity=0.256 Sum_probs=33.6
Q ss_pred EEEEcCCCCCCCchHhHhhhCCceEEEeeecCCCCCCC--CC---CHHHHHHHHHHHHhcC---CCcEEEEcCCCC
Q 028110 85 SIIYLCPEPYPEANTEFLKSNGIKLFQFAIEGHKEPFV--NI---PEDMIREALKVLLDVR---NHPVLIHCKRGK 152 (213)
Q Consensus 85 tVI~Lr~e~~~~~~~~~~~~~Gi~~~~ipi~d~~~p~~--~i---~~~~i~~al~~i~d~~---~~PVLVHC~~Gk 152 (213)
.|.||+++. ....++.+.|.+.+-+...+.+.... .+ ..+.+..+++.+.+.. .--++=||.+|.
T Consensus 202 yilDL~p~~---Slv~~L~~qGf~V~~iDwrgpg~s~~~~~~ddY~~~~i~~al~~v~~~~g~~kv~lvG~cmGGt 274 (532)
T TIGR01838 202 YILDLRPQN---SLVRWLVEQGHTVFVISWRNPDASQADKTFDDYIRDGVIAALEVVEAITGEKQVNCVGYCIGGT 274 (532)
T ss_pred eeeecccch---HHHHHHHHCCcEEEEEECCCCCcccccCChhhhHHHHHHHHHHHHHHhcCCCCeEEEEECcCcH
Confidence 455555542 34555666677666555544322111 11 1234566677766532 223677998884
No 270
>PRK12360 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional
Probab=22.74 E-value=4.1e+02 Score=23.59 Aligned_cols=21 Identities=24% Similarity=0.145 Sum_probs=10.2
Q ss_pred eEEcCCCChhcHHHHHhcCCc
Q 028110 64 IFRSGFPDSANFSFLQTLRLR 84 (213)
Q Consensus 64 Lyrs~~p~~~~~~~L~~lGIk 84 (213)
++|+--..+.....+++.|++
T Consensus 73 iirAHGv~~~~~~~~~~~g~~ 93 (281)
T PRK12360 73 IIRSHGVSKKVYKDLKDKGLE 93 (281)
T ss_pred EEeCCCCCHHHHHHHHHCCCe
Confidence 444444444445555555544
No 271
>PRK08617 acetolactate synthase; Reviewed
Probab=22.62 E-value=5.6e+02 Score=24.35 Aligned_cols=38 Identities=11% Similarity=0.042 Sum_probs=27.3
Q ss_pred HHHHHhcCCcEEEEcCCCCCCCchHhHhhhCCceEEEee
Q 028110 75 FSFLQTLRLRSIIYLCPEPYPEANTEFLKSNGIKLFQFA 113 (213)
Q Consensus 75 ~~~L~~lGIktVI~Lr~e~~~~~~~~~~~~~Gi~~~~ip 113 (213)
+..|+++||++|+-+-..... ...+.+.+.||+++...
T Consensus 12 ~~~L~~~GV~~vFg~pG~~~~-~l~~al~~~~i~~i~~~ 49 (552)
T PRK08617 12 VDSLINQGVKYVFGIPGAKID-RVFDALEDSGPELIVTR 49 (552)
T ss_pred HHHHHHcCCCEEEeCCCccHH-HHHHHHhhCCCCEEEec
Confidence 478999999999999886432 23334455789888764
No 272
>PF15192 TMEM213: TMEM213 family
Probab=22.53 E-value=40 Score=24.07 Aligned_cols=17 Identities=18% Similarity=0.450 Sum_probs=14.6
Q ss_pred EEcCCCCChHHHHHHHH
Q 028110 146 IHCKRGKHRTGCLVGCL 162 (213)
Q Consensus 146 VHC~~Gk~RTG~vva~y 162 (213)
..|.+|+|--|+++|..
T Consensus 36 ~CC~~gvDeyGWIAAAV 52 (82)
T PF15192_consen 36 RCCHAGVDEYGWIAAAV 52 (82)
T ss_pred HHhccCCchhhHHHHHH
Confidence 35999999999999875
No 273
>cd00568 TPP_enzymes Thiamine pyrophosphate (TPP) enzyme family, TPP-binding module; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. These enzymes include, among others, the E1 components of the pyruvate, the acetoin and the branched chain alpha-keto acid dehydrogenase complexes.
Probab=22.40 E-value=2.9e+02 Score=21.13 Aligned_cols=41 Identities=24% Similarity=0.291 Sum_probs=28.3
Q ss_pred chHhHhhhCCceEEEeeecCCCCCCCCCCHHHHHHHHHHHHhcCCCcEEEEcC
Q 028110 97 ANTEFLKSNGIKLFQFAIEGHKEPFVNIPEDMIREALKVLLDVRNHPVLIHCK 149 (213)
Q Consensus 97 ~~~~~~~~~Gi~~~~ipi~d~~~p~~~i~~~~i~~al~~i~d~~~~PVLVHC~ 149 (213)
+....++..|++++++ .+ .+.+.++++...+ .++|.+|+|.
T Consensus 127 d~~~~a~~~G~~~~~v--~~---------~~~l~~a~~~a~~-~~~p~~i~v~ 167 (168)
T cd00568 127 DFAALAEAYGAKGVRV--ED---------PEDLEAALAEALA-AGGPALIEVK 167 (168)
T ss_pred CHHHHHHHCCCeEEEE--CC---------HHHHHHHHHHHHh-CCCCEEEEEE
Confidence 3455667788877654 22 4567878877764 6789999984
No 274
>KOG1200 consensus Mitochondrial/plastidial beta-ketoacyl-ACP reductase [Lipid transport and metabolism]
Probab=22.38 E-value=3.3e+02 Score=23.53 Aligned_cols=71 Identities=20% Similarity=0.242 Sum_probs=42.2
Q ss_pred HHHHhcCCcEEEEc-CCCCCCCchHhHhhhCCc--eEEEeeecCCCCCCCCCCHHHHHHHHHHHHhcCCCc-EEEEcCCC
Q 028110 76 SFLQTLRLRSIIYL-CPEPYPEANTEFLKSNGI--KLFQFAIEGHKEPFVNIPEDMIREALKVLLDVRNHP-VLIHCKRG 151 (213)
Q Consensus 76 ~~L~~lGIktVI~L-r~e~~~~~~~~~~~~~Gi--~~~~ipi~d~~~p~~~i~~~~i~~al~~i~d~~~~P-VLVHC~~G 151 (213)
..|...|.+.+++- +... -.+.+...|- .+.-|.++-.+ .+.++..++...+.-+.| |||.| +|
T Consensus 32 ~~la~~Garv~v~dl~~~~----A~ata~~L~g~~~h~aF~~DVS~-------a~~v~~~l~e~~k~~g~psvlVnc-AG 99 (256)
T KOG1200|consen 32 QLLAKKGARVAVADLDSAA----AEATAGDLGGYGDHSAFSCDVSK-------AHDVQNTLEEMEKSLGTPSVLVNC-AG 99 (256)
T ss_pred HHHHhcCcEEEEeecchhh----HHHHHhhcCCCCccceeeeccCc-------HHHHHHHHHHHHHhcCCCcEEEEc-Cc
Confidence 57788899987764 4432 1222333333 44444444321 356777777777654444 89998 67
Q ss_pred CChHHHH
Q 028110 152 KHRTGCL 158 (213)
Q Consensus 152 k~RTG~v 158 (213)
..|-+++
T Consensus 100 ItrD~~L 106 (256)
T KOG1200|consen 100 ITRDGLL 106 (256)
T ss_pred cccccce
Confidence 8888764
No 275
>PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=22.36 E-value=4.3e+02 Score=21.49 Aligned_cols=69 Identities=13% Similarity=0.087 Sum_probs=34.3
Q ss_pred HHHHHhcCCcEEEEcCCCCCC-CchHhHhhhCCceEEEeeecCCCCCCCCCCHHHHHHHHHHHHhc-CCCcEEEEcCC
Q 028110 75 FSFLQTLRLRSIIYLCPEPYP-EANTEFLKSNGIKLFQFAIEGHKEPFVNIPEDMIREALKVLLDV-RNHPVLIHCKR 150 (213)
Q Consensus 75 ~~~L~~lGIktVI~Lr~e~~~-~~~~~~~~~~Gi~~~~ipi~d~~~p~~~i~~~~i~~al~~i~d~-~~~PVLVHC~~ 150 (213)
...|.+.|.+.|+--|..... ....+.++..+.+...+..+-. ..+.+.++++.+.+. ..--++|||.+
T Consensus 19 a~~L~~~g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~-------~~~~~~~~~~~~~~~~~~id~vi~~ag 89 (256)
T PRK12745 19 ARALAAAGFDLAINDRPDDEELAATQQELRALGVEVIFFPADVA-------DLSAHEAMLDAAQAAWGRIDCLVNNAG 89 (256)
T ss_pred HHHHHHCCCEEEEEecCchhHHHHHHHHHHhcCCceEEEEecCC-------CHHHHHHHHHHHHHhcCCCCEEEECCc
Confidence 356778898655544443211 1122222333333333333221 135677777777653 22359999975
No 276
>PRK06949 short chain dehydrogenase; Provisional
Probab=22.31 E-value=3.3e+02 Score=22.25 Aligned_cols=69 Identities=7% Similarity=-0.009 Sum_probs=33.5
Q ss_pred HHHHhcCCcEEEEcCCCCCCCchHhHhhhCCceEEEeeecCCCCCCCCCCHHHHHHHHHHHHhcC-CCcEEEEcCCC
Q 028110 76 SFLQTLRLRSIIYLCPEPYPEANTEFLKSNGIKLFQFAIEGHKEPFVNIPEDMIREALKVLLDVR-NHPVLIHCKRG 151 (213)
Q Consensus 76 ~~L~~lGIktVI~Lr~e~~~~~~~~~~~~~Gi~~~~ipi~d~~~p~~~i~~~~i~~al~~i~d~~-~~PVLVHC~~G 151 (213)
..|.+.|.+.++--|..+.-+.....+...+-+...+.++-. ..+.+.++++.+.... .--++|||.+.
T Consensus 27 ~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~-------~~~~~~~~~~~~~~~~~~~d~li~~ag~ 96 (258)
T PRK06949 27 QVLAQAGAKVVLASRRVERLKELRAEIEAEGGAAHVVSLDVT-------DYQSIKAAVAHAETEAGTIDILVNNSGV 96 (258)
T ss_pred HHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCC-------CHHHHHHHHHHHHHhcCCCCEEEECCCC
Confidence 566778987554444432101111112222323333333221 1456777777665432 23499999874
No 277
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=21.92 E-value=2.9e+02 Score=22.44 Aligned_cols=70 Identities=13% Similarity=0.057 Sum_probs=34.6
Q ss_pred HHHHHhcCCcEEEEcCCCCCCCchHhHhhhCCceEEEeeecCCCCCCCCCCHHHHHHHHHHHHhc-CCCcEEEEcCCC
Q 028110 75 FSFLQTLRLRSIIYLCPEPYPEANTEFLKSNGIKLFQFAIEGHKEPFVNIPEDMIREALKVLLDV-RNHPVLIHCKRG 151 (213)
Q Consensus 75 ~~~L~~lGIktVI~Lr~e~~~~~~~~~~~~~Gi~~~~ipi~d~~~p~~~i~~~~i~~al~~i~d~-~~~PVLVHC~~G 151 (213)
..+|.+.|.+.++.-|...........+...+.+...+.++-. ..+.+..+++.+.+. .+--++|||.+.
T Consensus 18 ~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~-------~~~~~~~~~~~~~~~~~~~d~vi~~a~~ 88 (255)
T TIGR01963 18 ALALAAAGANVVVNDLGEAGAEAAAKVATDAGGSVIYLVADVT-------KEDEIADMIAAAAAEFGGLDILVNNAGI 88 (255)
T ss_pred HHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEECCCC-------CHHHHHHHHHHHHHhcCCCCEEEECCCC
Confidence 3567778986555555432111111112223323322222221 145677777777653 233589999865
No 278
>TIGR00109 hemH ferrochelatase. Human ferrochelatase, found at the mitochondrial inner membrane inner surface, was shown in an active recombinant form to be a homodimer. This contrasts to an earlier finding by gel filtration that overexpressed E. coli ferrochelatase runs as a monomer.
Probab=21.86 E-value=3.5e+02 Score=24.13 Aligned_cols=44 Identities=11% Similarity=-0.019 Sum_probs=29.5
Q ss_pred cHHHHHhcCCcEEEEcCCCCC----------CCchHhHhhhCCce-EEEeeecCC
Q 028110 74 NFSFLQTLRLRSIIYLCPEPY----------PEANTEFLKSNGIK-LFQFAIEGH 117 (213)
Q Consensus 74 ~~~~L~~lGIktVI~Lr~e~~----------~~~~~~~~~~~Gi~-~~~ipi~d~ 117 (213)
-++.|.+.|++.|+-+...-. .-...+.+.+.|++ +..+|....
T Consensus 251 ~l~~l~~~G~k~V~vvP~gFv~D~lETl~ei~~e~~~~~~~~G~~~~~~vp~lN~ 305 (322)
T TIGR00109 251 LLEKLGEQGVQHIVVVPIGFTADHLETLYEIDEEYREVAEDAGGDKYQRCPALNA 305 (322)
T ss_pred HHHHHHHcCCceEEEECCcccccchhHHHhhhHHHHHHHHHcCCCeEEECCCCCC
Confidence 457788889999988876311 11233567778888 887887654
No 279
>cd06389 PBP1_iGluR_AMPA_GluR2 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR2 subunit of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR2 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs).
Probab=21.85 E-value=3.3e+02 Score=24.41 Aligned_cols=73 Identities=12% Similarity=0.246 Sum_probs=45.2
Q ss_pred HHHHHhcCCcEEEEcCCCCCC----CchHhHhhhCCceEEEeeecCCCCCCCCCCHHHHHHHHHHHHhcCCCcEEEEcCC
Q 028110 75 FSFLQTLRLRSIIYLCPEPYP----EANTEFLKSNGIKLFQFAIEGHKEPFVNIPEDMIREALKVLLDVRNHPVLIHCKR 150 (213)
Q Consensus 75 ~~~L~~lGIktVI~Lr~e~~~----~~~~~~~~~~Gi~~~~ipi~d~~~p~~~i~~~~i~~al~~i~d~~~~PVLVHC~~ 150 (213)
+..++.+|.++|+-+....+. ....+.++..|++...+.+..-..+ -....++..|+.|......-|++||..
T Consensus 110 ~d~i~~~~wk~vailYdsd~gl~~lq~l~~~~~~~g~~V~~~~~~~i~~~---~~~~d~~~~L~~ik~~~~~~Iil~~~~ 186 (370)
T cd06389 110 LSLIEYYQWDKFAYLYDSDRGLSTLQAVLDSAAEKKWQVTAINVGNINND---RKDEAYRSLFQDLENKKERRVILDCER 186 (370)
T ss_pred HHHHHhcCCcEEEEEecCchHHHHHHHHHHhhccCCceEEEEEeecCCCc---cchHHHHHHHHHhccccceEEEEECCH
Confidence 456788999999999864321 1344455667876654443321111 013467778888866566779999965
No 280
>cd02002 TPP_BFDC Thiamine pyrophosphate (TPP) family, BFDC subfamily, TPP-binding module; composed of proteins similar to Pseudomonas putida benzoylformate decarboxylase (BFDC). P. putida BFDC plays a role in the mandelate pathway, catalyzing the conversion of benzoylformate to benzaldehyde and carbon dioxide. This enzyme is dependent on TPP and a divalent metal cation as cofactors.
Probab=21.68 E-value=2.3e+02 Score=22.30 Aligned_cols=23 Identities=30% Similarity=0.433 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHhcCCCcEEEEcC
Q 028110 126 EDMIREALKVLLDVRNHPVLIHCK 149 (213)
Q Consensus 126 ~~~i~~al~~i~d~~~~PVLVHC~ 149 (213)
.+.+.++++...+ .++|.+|||.
T Consensus 155 ~~el~~al~~a~~-~~~p~vi~v~ 177 (178)
T cd02002 155 PEELDEALREALA-EGGPALIEVV 177 (178)
T ss_pred HHHHHHHHHHHHh-CCCCEEEEEE
Confidence 4567777777665 6789999984
No 281
>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated
Probab=21.65 E-value=4.6e+02 Score=21.56 Aligned_cols=67 Identities=13% Similarity=0.032 Sum_probs=35.4
Q ss_pred HHHHhcCCcEEEEcCCCCCCCchHhHhhhCCceEEEeeecCCCCCCCCCCHHHHHHHHHHHHhcCC-CcEEEEcCCC
Q 028110 76 SFLQTLRLRSIIYLCPEPYPEANTEFLKSNGIKLFQFAIEGHKEPFVNIPEDMIREALKVLLDVRN-HPVLIHCKRG 151 (213)
Q Consensus 76 ~~L~~lGIktVI~Lr~e~~~~~~~~~~~~~Gi~~~~ipi~d~~~p~~~i~~~~i~~al~~i~d~~~-~PVLVHC~~G 151 (213)
..|.+.|.+.|+--+... ....+.+...+.+...+.++-. ..+.+.++++.+.+.-+ --++|||.+.
T Consensus 28 ~~l~~~G~~vv~~~~~~~--~~~~~~~~~~~~~~~~~~~Dl~-------~~~~~~~~~~~~~~~~~~~D~li~~Ag~ 95 (253)
T PRK08993 28 LGLAEAGCDIVGINIVEP--TETIEQVTALGRRFLSLTADLR-------KIDGIPALLERAVAEFGHIDILVNNAGL 95 (253)
T ss_pred HHHHHCCCEEEEecCcch--HHHHHHHHhcCCeEEEEECCCC-------CHHHHHHHHHHHHHHhCCCCEEEECCCC
Confidence 466778887554222221 1222223344544444443332 24678888887765333 3499999764
No 282
>COG2517 Predicted RNA-binding protein containing a C-terminal EMAP domain [General function prediction only]
Probab=21.63 E-value=84 Score=26.52 Aligned_cols=28 Identities=43% Similarity=0.702 Sum_probs=21.0
Q ss_pred CCCCCCCc--eeeeCCCCcccc-ccceEEcC
Q 028110 41 APVVTGDE--VTLIPPLNFSMV-DNGIFRSG 68 (213)
Q Consensus 41 ~~~~~~~~--~~l~p~~Nf~~V-~~~Lyrs~ 68 (213)
.+++.|+. |.|.||.||.-| ..|.|.+.
T Consensus 158 ~~vreg~~vaVAlLPPr~F~gvvSeGMFlg~ 188 (219)
T COG2517 158 LDVREGDRVAVALLPPRNFFGVVSEGMFLGA 188 (219)
T ss_pred cccccCCEEEEEecChhHhccccccceeecc
Confidence 44566776 889999999854 56688776
No 283
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=21.41 E-value=2.7e+02 Score=21.17 Aligned_cols=36 Identities=17% Similarity=0.240 Sum_probs=24.7
Q ss_pred HHHHHHHHHhc-CCCcEEEEcCCCCChHHHHHHHHHH
Q 028110 129 IREALKVLLDV-RNHPVLIHCKRGKHRTGCLVGCLRK 164 (213)
Q Consensus 129 i~~al~~i~d~-~~~PVLVHC~~Gk~RTG~vva~yl~ 164 (213)
+.++++.+.+. ....++++-..|.|-|.+++++...
T Consensus 12 i~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~ 48 (184)
T PF04851_consen 12 IARIINSLENKKEERRVLLNAPTGSGKTIIALALILE 48 (184)
T ss_dssp HHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhc
Confidence 44444444332 3578999999999999988865544
No 284
>PF04263 TPK_catalytic: Thiamin pyrophosphokinase, catalytic domain; InterPro: IPR007371 Thiamin pyrophosphokinase (TPK, 2.7.6.2 from EC) catalyzes the transfer of a pyrophosphate group from ATP to vitamin B1 (thiamin) to form the coenzyme thiamin pyrophosphate (TPP). Thus, TPK is important for the formation of a coenzyme required for central metabolic functions. The structure of thiamin pyrophosphokinase suggests that the enzyme may operate by a mechanism of pyrophosphoryl transfer similar to those described for pyrophosphokinases functioning in nucleotide biosynthesis [].; GO: 0004788 thiamine diphosphokinase activity, 0005524 ATP binding, 0009229 thiamine diphosphate biosynthetic process; PDB: 2F17_B 1IG3_B 3S4Y_B 2OMK_B 1IG0_A 3MEL_B 3CQ9_A 3LM8_B 3K94_B 3L8M_B ....
Probab=21.36 E-value=3.8e+02 Score=20.48 Aligned_cols=77 Identities=16% Similarity=0.259 Sum_probs=46.5
Q ss_pred cHHHHHhc-CCcEEEEcCC-CCCCCchHhHhhhCCceEEEeeecCCCCCCCCCCHHHHHHHHHHHHhcCCCcEEEEcCCC
Q 028110 74 NFSFLQTL-RLRSIIYLCP-EPYPEANTEFLKSNGIKLFQFAIEGHKEPFVNIPEDMIREALKVLLDVRNHPVLIHCKRG 151 (213)
Q Consensus 74 ~~~~L~~l-GIktVI~Lr~-e~~~~~~~~~~~~~Gi~~~~ipi~d~~~p~~~i~~~~i~~al~~i~d~~~~PVLVHC~~G 151 (213)
....|.++ |++--+-..- +...+...++++..|.+.++.|-.+. .++..+++.+.+.....|+|-+..|
T Consensus 25 Ga~~l~~~~g~~Pd~iiGDfDSi~~~~~~~~~~~~~~~~~~p~kD~---------TD~e~Al~~~~~~~~~~i~v~Ga~G 95 (123)
T PF04263_consen 25 GANRLYELFGIKPDLIIGDFDSISPEVLEFYKSKGVEIIHFPEKDY---------TDLEKALEYAIEQGPDEIIVLGALG 95 (123)
T ss_dssp HHHHHHHTTTT--SEEEC-SSSS-HHHHHHHHHCTTEEEEE-STTS----------HHHHHHHHHHHTTTSEEEEES-SS
T ss_pred HHHHHHHhcCCCCCEEEecCCCCChHHHHHHHhhccceeccccccc---------CHHHHHHHHHHHCCCCEEEEEecCC
Confidence 45666676 7654333322 12233567778889999999993332 3567788888776667899888888
Q ss_pred CChHHHHHH
Q 028110 152 KHRTGCLVG 160 (213)
Q Consensus 152 k~RTG~vva 160 (213)
. |-==..+
T Consensus 96 g-R~DH~la 103 (123)
T PF04263_consen 96 G-RFDHTLA 103 (123)
T ss_dssp S-SHHHHHH
T ss_pred C-cHHHHHH
Confidence 5 7653333
No 285
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=21.27 E-value=4.3e+02 Score=21.36 Aligned_cols=69 Identities=12% Similarity=0.045 Sum_probs=34.2
Q ss_pred HHHHhcCCcEEEEcCCCCCCCchHhHhhhCCceEEEeeecCCCCCCCCCCHHHHHHHHHHHHhcC-CCcEEEEcCCC
Q 028110 76 SFLQTLRLRSIIYLCPEPYPEANTEFLKSNGIKLFQFAIEGHKEPFVNIPEDMIREALKVLLDVR-NHPVLIHCKRG 151 (213)
Q Consensus 76 ~~L~~lGIktVI~Lr~e~~~~~~~~~~~~~Gi~~~~ipi~d~~~p~~~i~~~~i~~al~~i~d~~-~~PVLVHC~~G 151 (213)
..|.+.|.+.++--+...........+...+-++..++++-. ..+.+.++++.+.+.. +--++|||.+.
T Consensus 21 ~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~d~~-------~~~~~~~~~~~~~~~~~~~d~vi~~ag~ 90 (250)
T TIGR03206 21 RRFAEEGAKVAVFDLNREAAEKVAADIRAKGGNAQAFACDIT-------DRDSVDTAVAAAEQALGPVDVLVNNAGW 90 (250)
T ss_pred HHHHHCCCEEEEecCCHHHHHHHHHHHHhcCCcEEEEEcCCC-------CHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 466677875444334331111112222333333333343321 2467777777776532 33589999874
No 286
>PLN02723 3-mercaptopyruvate sulfurtransferase
Probab=21.24 E-value=2.2e+02 Score=25.32 Aligned_cols=43 Identities=14% Similarity=0.055 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHhcCCCcEEEEcCCCCChHHHHHHHHHHHCCCC
Q 028110 126 EDMIREALKVLLDVRNHPVLIHCKRGKHRTGCLVGCLRKLQKWC 169 (213)
Q Consensus 126 ~~~i~~al~~i~d~~~~PVLVHC~~Gk~RTG~vva~yl~~~gws 169 (213)
.+.+.+.+..+-=..+.+|+|.|..|...++ -++..+...|.+
T Consensus 88 ~~~~~~~l~~~Gi~~~~~VVvY~~~g~~~a~-r~~~~L~~~G~~ 130 (320)
T PLN02723 88 EEAFAAAVSALGIENKDGVVVYDGKGIFSAA-RVWWMFRVFGHE 130 (320)
T ss_pred HHHHHHHHHHcCCCCCCEEEEEcCCCcchHH-HHHHHHHHcCCC
Confidence 4566666655432356799999988754333 333344445553
No 287
>PRK07775 short chain dehydrogenase; Provisional
Probab=21.05 E-value=3.7e+02 Score=22.56 Aligned_cols=70 Identities=10% Similarity=0.046 Sum_probs=35.6
Q ss_pred HHHHHhcCCcEEEEcCCCCCCCchHhHhhhCCceEEEeeecCCCCCCCCCCHHHHHHHHHHHHhc-CCCcEEEEcCCC
Q 028110 75 FSFLQTLRLRSIIYLCPEPYPEANTEFLKSNGIKLFQFAIEGHKEPFVNIPEDMIREALKVLLDV-RNHPVLIHCKRG 151 (213)
Q Consensus 75 ~~~L~~lGIktVI~Lr~e~~~~~~~~~~~~~Gi~~~~ipi~d~~~p~~~i~~~~i~~al~~i~d~-~~~PVLVHC~~G 151 (213)
...|.+.|.+.++--|..+........+...|.+...+..+-. ..+.+.++++.+.+. ..--++|||.+.
T Consensus 27 a~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~-------~~~~~~~~~~~~~~~~~~id~vi~~Ag~ 97 (274)
T PRK07775 27 AIELAAAGFPVALGARRVEKCEELVDKIRADGGEAVAFPLDVT-------DPDSVKSFVAQAEEALGEIEVLVSGAGD 97 (274)
T ss_pred HHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCC-------CHHHHHHHHHHHHHhcCCCCEEEECCCc
Confidence 3577778987655545432111111112233444333333221 246777777776542 234599999854
No 288
>PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=20.99 E-value=7.3e+02 Score=23.66 Aligned_cols=38 Identities=8% Similarity=-0.025 Sum_probs=26.9
Q ss_pred HHHHHhcCCcEEEEcCCCCCCCchHhHhhhCCceEEEee
Q 028110 75 FSFLQTLRLRSIIYLCPEPYPEANTEFLKSNGIKLFQFA 113 (213)
Q Consensus 75 ~~~L~~lGIktVI~Lr~e~~~~~~~~~~~~~Gi~~~~ip 113 (213)
+..|+++||++|+-+-..... ...+.+.+.+|+++...
T Consensus 15 ~~~L~~~Gv~~vFgipG~~~~-~l~~al~~~~i~~v~~~ 52 (561)
T PRK06048 15 IKCLEKEGVEVIFGYPGGAII-PVYDELYDSDLRHILVR 52 (561)
T ss_pred HHHHHHcCCCEEEECCCcchH-HHHHHHhhCCCeEEEec
Confidence 478999999999998876432 23334455788888654
No 289
>PRK12829 short chain dehydrogenase; Provisional
Probab=20.96 E-value=3.3e+02 Score=22.27 Aligned_cols=27 Identities=7% Similarity=0.081 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHhc-CCCcEEEEcCCCC
Q 028110 126 EDMIREALKVLLDV-RNHPVLIHCKRGK 152 (213)
Q Consensus 126 ~~~i~~al~~i~d~-~~~PVLVHC~~Gk 152 (213)
.+.+.++++.+.+. .+--++|||.+..
T Consensus 70 ~~~~~~~~~~~~~~~~~~d~vi~~ag~~ 97 (264)
T PRK12829 70 PAQVERVFDTAVERFGGLDVLVNNAGIA 97 (264)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEECCCCC
Confidence 45677777776543 2346999998765
No 290
>COG2131 ComEB Deoxycytidylate deaminase [Nucleotide transport and metabolism]
Probab=20.95 E-value=2.3e+02 Score=23.20 Aligned_cols=50 Identities=24% Similarity=0.481 Sum_probs=38.5
Q ss_pred eEEcCCCChhcHHHHHhcCCcEEEEcCCCCCC---CchHhHhhhCCceEEEee
Q 028110 64 IFRSGFPDSANFSFLQTLRLRSIIYLCPEPYP---EANTEFLKSNGIKLFQFA 113 (213)
Q Consensus 64 Lyrs~~p~~~~~~~L~~lGIktVI~Lr~e~~~---~~~~~~~~~~Gi~~~~ip 113 (213)
||..-.|-..=...+-+.|||.|+.-.+.+.. ..-..++++.|++..++|
T Consensus 100 lYvt~~PC~~Cak~Ii~aGIk~Vvy~~~Y~~~~~~~~s~~l~~~agv~~~~~~ 152 (164)
T COG2131 100 LYVTHFPCSNCAKLIIQAGIKEVVYAEPYPTETVAPYSQELLEEAGVKVRQFP 152 (164)
T ss_pred EEEEecccHHHHHHHHHhCceEEEeecCCCcchhhHHHHHHHHhCCceEEecc
Confidence 88888888765567778899999998876432 234566788999999988
No 291
>PRK12999 pyruvate carboxylase; Reviewed
Probab=20.93 E-value=4.7e+02 Score=27.90 Aligned_cols=55 Identities=13% Similarity=0.212 Sum_probs=35.3
Q ss_pred hhhCCceEEEeeecCCCCCCCCCCHHHHHHHHHHHHhcCCCcEEEEcCCCCChHHHHHHHHHH
Q 028110 102 LKSNGIKLFQFAIEGHKEPFVNIPEDMIREALKVLLDVRNHPVLIHCKRGKHRTGCLVGCLRK 164 (213)
Q Consensus 102 ~~~~Gi~~~~ipi~d~~~p~~~i~~~~i~~al~~i~d~~~~PVLVHC~~Gk~RTG~vva~yl~ 164 (213)
+.+.|+..+.| .|... -+.+..+.+.++.+.+.-+-||-+||+. -.|+.+|.++.
T Consensus 700 l~~~Ga~~i~i--kDt~G---~l~P~~~~~lv~~lk~~~~ipi~~H~Hn---t~Gla~an~la 754 (1146)
T PRK12999 700 LEKAGAHILAI--KDMAG---LLKPAAAYELVSALKEEVDLPIHLHTHD---TSGNGLATYLA 754 (1146)
T ss_pred HHHcCCCEEEE--CCccC---CCCHHHHHHHHHHHHHHcCCeEEEEeCC---CCchHHHHHHH
Confidence 45678765544 44211 2346678888888876556899999976 45666666664
No 292
>PRK07282 acetolactate synthase catalytic subunit; Reviewed
Probab=20.84 E-value=6.4e+02 Score=24.16 Aligned_cols=38 Identities=13% Similarity=0.084 Sum_probs=26.4
Q ss_pred HHHHHhcCCcEEEEcCCCCCCCchHhHh-hhCCceEEEee
Q 028110 75 FSFLQTLRLRSIIYLCPEPYPEANTEFL-KSNGIKLFQFA 113 (213)
Q Consensus 75 ~~~L~~lGIktVI~Lr~e~~~~~~~~~~-~~~Gi~~~~ip 113 (213)
+..|+++||++|.-+-..... ..-+.+ +..||+++...
T Consensus 17 ~~~L~~~Gv~~vFgipG~~~~-~l~dal~~~~~i~~i~~r 55 (566)
T PRK07282 17 LETLRDLGVDTIFGYPGGAVL-PLYDAIYNFEGIRHILAR 55 (566)
T ss_pred HHHHHHcCCCEEEecCCcchH-HHHHHHhhcCCceEEEec
Confidence 478999999999999876432 233334 33588888654
No 293
>PRK08690 enoyl-(acyl carrier protein) reductase; Provisional
Probab=20.70 E-value=3e+02 Score=23.06 Aligned_cols=67 Identities=10% Similarity=0.007 Sum_probs=35.9
Q ss_pred HHHHhcCCcEEEEcCCCCCCCchHhHhhhCCceEEEeeecCCCCCCCCCCHHHHHHHHHHHHhcC-CCcEEEEcCC
Q 028110 76 SFLQTLRLRSIIYLCPEPYPEANTEFLKSNGIKLFQFAIEGHKEPFVNIPEDMIREALKVLLDVR-NHPVLIHCKR 150 (213)
Q Consensus 76 ~~L~~lGIktVI~Lr~e~~~~~~~~~~~~~Gi~~~~ipi~d~~~p~~~i~~~~i~~al~~i~d~~-~~PVLVHC~~ 150 (213)
..|.+.|.+.|+.-+.+...+...+...+.|- .+.++++-. +.+++.++++.+.+.- .--++|||.+
T Consensus 26 ~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~Dv~-------~~~~v~~~~~~~~~~~g~iD~lVnnAG 93 (261)
T PRK08690 26 KACREQGAELAFTYVVDKLEERVRKMAAELDS-ELVFRCDVA-------SDDEINQVFADLGKHWDGLDGLVHSIG 93 (261)
T ss_pred HHHHHCCCEEEEEcCcHHHHHHHHHHHhccCC-ceEEECCCC-------CHHHHHHHHHHHHHHhCCCcEEEECCc
Confidence 56778899888764433111112222222232 122333221 2467888888877632 3359999964
No 294
>PRK05855 short chain dehydrogenase; Validated
Probab=20.67 E-value=2.3e+02 Score=26.31 Aligned_cols=69 Identities=7% Similarity=0.065 Sum_probs=36.5
Q ss_pred HHHHhcCCcEEEEcCCCCCCCchHhHhhhCCceEEEeeecCCCCCCCCCCHHHHHHHHHHHHhcCC-CcEEEEcCCC
Q 028110 76 SFLQTLRLRSIIYLCPEPYPEANTEFLKSNGIKLFQFAIEGHKEPFVNIPEDMIREALKVLLDVRN-HPVLIHCKRG 151 (213)
Q Consensus 76 ~~L~~lGIktVI~Lr~e~~~~~~~~~~~~~Gi~~~~ipi~d~~~p~~~i~~~~i~~al~~i~d~~~-~PVLVHC~~G 151 (213)
..|.+.|.+.|+.-|..+..+...+.++..|.+...++++-. +.+.+.++++.+.+..+ --++|||.+.
T Consensus 333 ~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~-------~~~~~~~~~~~~~~~~g~id~lv~~Ag~ 402 (582)
T PRK05855 333 LAFAREGAEVVASDIDEAAAERTAELIRAAGAVAHAYRVDVS-------DADAMEAFAEWVRAEHGVPDIVVNNAGI 402 (582)
T ss_pred HHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCC-------CHHHHHHHHHHHHHhcCCCcEEEECCcc
Confidence 467778988655545432111122223344544444443322 24677778877765322 3599999743
No 295
>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional
Probab=20.67 E-value=3.4e+02 Score=23.09 Aligned_cols=67 Identities=6% Similarity=0.035 Sum_probs=35.9
Q ss_pred HHHHhcCCcEEEEcCCCCCCCchHhHhhhCCceEEEeeecCCCCCCCCCCHHHHHHHHHHHHhcC-CCcEEEEcCC
Q 028110 76 SFLQTLRLRSIIYLCPEPYPEANTEFLKSNGIKLFQFAIEGHKEPFVNIPEDMIREALKVLLDVR-NHPVLIHCKR 150 (213)
Q Consensus 76 ~~L~~lGIktVI~Lr~e~~~~~~~~~~~~~Gi~~~~ipi~d~~~p~~~i~~~~i~~al~~i~d~~-~~PVLVHC~~ 150 (213)
..|.+.|.+.|+.-|.+...+...+...+.|-. ..++++-. +.+.+.++++.+.+.- .--+||||.+
T Consensus 25 ~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~-~~~~~Dv~-------d~~~v~~~~~~i~~~~g~iDilVnnAG 92 (274)
T PRK08415 25 KACFEQGAELAFTYLNEALKKRVEPIAQELGSD-YVYELDVS-------KPEHFKSLAESLKKDLGKIDFIVHSVA 92 (274)
T ss_pred HHHHHCCCEEEEEecCHHHHHHHHHHHHhcCCc-eEEEecCC-------CHHHHHHHHHHHHHHcCCCCEEEECCc
Confidence 466678998777655532111222222333433 22333221 2467888888876532 2359999965
No 296
>COG0794 GutQ Predicted sugar phosphate isomerase involved in capsule formation [Cell envelope biogenesis, outer membrane]
Probab=20.63 E-value=2.4e+02 Score=23.87 Aligned_cols=35 Identities=14% Similarity=0.314 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHhcCCCcEEEEcCCCCChHHHHHHHHHH
Q 028110 126 EDMIREALKVLLDVRNHPVLIHCKRGKHRTGCLVGCLRK 164 (213)
Q Consensus 126 ~~~i~~al~~i~d~~~~PVLVHC~~Gk~RTG~vva~yl~ 164 (213)
.+.+.++.+.|++ ..+.|+| .|.||+|.+.-.+-+
T Consensus 25 ~~~~~~a~~~i~~-~~gkv~V---~G~GkSG~Igkk~Aa 59 (202)
T COG0794 25 DEDFVRAVELILE-CKGKVFV---TGVGKSGLIGKKFAA 59 (202)
T ss_pred HHHHHHHHHHHHh-cCCcEEE---EcCChhHHHHHHHHH
Confidence 3577788888887 4677887 388999999866654
No 297
>PRK06198 short chain dehydrogenase; Provisional
Probab=20.61 E-value=4.8e+02 Score=21.33 Aligned_cols=69 Identities=10% Similarity=-0.001 Sum_probs=35.9
Q ss_pred HHHHhcCCcEEEEcCCC-CCCCchHhHhhhCCceEEEeeecCCCCCCCCCCHHHHHHHHHHHHhcC-CCcEEEEcCCC
Q 028110 76 SFLQTLRLRSIIYLCPE-PYPEANTEFLKSNGIKLFQFAIEGHKEPFVNIPEDMIREALKVLLDVR-NHPVLIHCKRG 151 (213)
Q Consensus 76 ~~L~~lGIktVI~Lr~e-~~~~~~~~~~~~~Gi~~~~ipi~d~~~p~~~i~~~~i~~al~~i~d~~-~~PVLVHC~~G 151 (213)
..|.+.|.+.|+-+... +......+.+...+-+...++++-. ..+.+.++++.+.+.- .--++|||.+.
T Consensus 24 ~~l~~~G~~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~-------~~~~~~~~~~~~~~~~g~id~li~~ag~ 94 (260)
T PRK06198 24 RAFAERGAAGLVICGRNAEKGEAQAAELEALGAKAVFVQADLS-------DVEDCRRVVAAADEAFGRLDALVNAAGL 94 (260)
T ss_pred HHHHHCCCCeEEEEcCCHHHHHHHHHHHHhcCCeEEEEEccCC-------CHHHHHHHHHHHHHHhCCCCEEEECCCc
Confidence 46677898855555432 1111122233344444433343322 1456777777765432 23599999865
No 298
>cd07211 Pat_PNPLA8 Patatin-like phospholipase domain containing protein 8. PNPLA8 is a Ca-independent myocardial phospholipase which maintains mitochondrial integrity. PNPLA8 is also known as iPLA2-gamma. In humans, it is predominantly expressed in heart tissue. iPLA2-gamma can catalyze both phospholipase A1 and A2 reactions (PLA1 and PLA2 respectively). This family includes PNPLA8 (iPLA2-gamma) from Homo sapiens and iPLA2-2 from Mus musculus.
Probab=20.54 E-value=1.3e+02 Score=26.41 Aligned_cols=49 Identities=22% Similarity=0.415 Sum_probs=34.2
Q ss_pred HHHHHHhcCCCcE--EEEcCCCCChHHHHHHHHHHHCCCCHHHHHHHHHhHh
Q 028110 132 ALKVLLDVRNHPV--LIHCKRGKHRTGCLVGCLRKLQKWCLSSVFDEYQRFA 181 (213)
Q Consensus 132 al~~i~d~~~~PV--LVHC~~Gk~RTG~vva~yl~~~gws~e~al~ey~~~~ 181 (213)
+|+.|.+..+.|+ +++.-.|- =||.++|+++...|++.+++.+-|....
T Consensus 26 vL~~Le~~~~~~i~~~fDli~GT-StGgiiA~~la~~~~~~~e~~~~y~~~~ 76 (308)
T cd07211 26 ILRKIEKLTGKPIHELFDYICGV-STGAILAFLLGLKKMSLDECEELYRKLG 76 (308)
T ss_pred HHHHHHHHhCCCchhhcCEEEec-ChhHHHHHHHhcccccHHHHHHHHHHHH
Confidence 4455544334554 46777775 6788888887777899999999887643
No 299
>cd02008 TPP_IOR_alpha Thiamine pyrophosphate (TPP) family, IOR-alpha subfamily, TPP-binding module; composed of proteins similar to indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit. IOR catalyzes the oxidative decarboxylation of arylpyruvates, such as indolepyruvate or phenylpyruvate, which are generated by the transamination of aromatic amino acids, to the corresponding aryl acetyl-CoA.
Probab=20.53 E-value=2.8e+02 Score=22.13 Aligned_cols=44 Identities=23% Similarity=0.188 Sum_probs=25.1
Q ss_pred chHhHhhhCCceEEEeeecCCCCCCCCCCHHHHHHHHHHHHhcCCCcEEEEcC
Q 028110 97 ANTEFLKSNGIKLFQFAIEGHKEPFVNIPEDMIREALKVLLDVRNHPVLIHCK 149 (213)
Q Consensus 97 ~~~~~~~~~Gi~~~~ipi~d~~~p~~~i~~~~i~~al~~i~d~~~~PVLVHC~ 149 (213)
+....++..|+.+..+- +.. ..+.+.++++..++ .++|.+||+.
T Consensus 132 d~~~~a~a~G~~~~~v~--~~~------~l~~~~~al~~a~~-~~gp~lI~v~ 175 (178)
T cd02008 132 DIEALVRAIGVKRVVVV--DPY------DLKAIREELKEALA-VPGVSVIIAK 175 (178)
T ss_pred CHHHHHHHCCCCEEEec--Ccc------CHHHHHHHHHHHHh-CCCCEEEEEe
Confidence 34555666777766542 211 12334456666554 5789999874
No 300
>TIGR01829 AcAcCoA_reduct acetoacetyl-CoA reductase. (R)-3-hydroxyacyl-CoA + NADP+ = 3-oxoacyl-CoA + NADPH. Members of this family may act in the biosynthesis of poly-beta-hydroxybutyrate (e.g. Rhizobium meliloti) and related poly-beta-hydroxyalkanoates. Note that the member of this family from Azospirillum brasilense, designated NodG, appears to lack acetoacetyl-CoA reductase activity and to act instead in the production of nodulation factor. This family is downgraded to subfamily for this NodG. Other proteins designated NodG, as from Rhizobium, belong to related but distinct protein families.
Probab=20.51 E-value=3.5e+02 Score=21.68 Aligned_cols=68 Identities=10% Similarity=-0.036 Sum_probs=35.0
Q ss_pred HHHHHhcCCcEEEEcCCCCCCCchHhH---hhhCCceEEEeeecCCCCCCCCCCHHHHHHHHHHHHhcC-CCcEEEEcCC
Q 028110 75 FSFLQTLRLRSIIYLCPEPYPEANTEF---LKSNGIKLFQFAIEGHKEPFVNIPEDMIREALKVLLDVR-NHPVLIHCKR 150 (213)
Q Consensus 75 ~~~L~~lGIktVI~Lr~e~~~~~~~~~---~~~~Gi~~~~ipi~d~~~p~~~i~~~~i~~al~~i~d~~-~~PVLVHC~~ 150 (213)
...|.+.|.+.|+..++.+. ...++ ....+.+..-+.++-. ..+.+.++++.+.+.. .--++|||.+
T Consensus 17 a~~l~~~G~~v~~~~r~~~~--~~~~~~~~~~~~~~~~~~~~~D~~-------~~~~~~~~~~~~~~~~~~id~vi~~ag 87 (242)
T TIGR01829 17 CQRLAKDGYRVAANCGPNEE--RAEAWLQEQGALGFDFRVVEGDVS-------SFESCKAAVAKVEAELGPIDVLVNNAG 87 (242)
T ss_pred HHHHHHCCCEEEEEeCCCHH--HHHHHHHHHHhhCCceEEEEecCC-------CHHHHHHHHHHHHHHcCCCcEEEECCC
Confidence 35677889987776663321 11111 1222333333332221 1456777777766532 2348999975
Q ss_pred C
Q 028110 151 G 151 (213)
Q Consensus 151 G 151 (213)
.
T Consensus 88 ~ 88 (242)
T TIGR01829 88 I 88 (242)
T ss_pred C
Confidence 4
No 301
>COG2217 ZntA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=20.34 E-value=3.3e+02 Score=27.48 Aligned_cols=86 Identities=16% Similarity=0.184 Sum_probs=54.3
Q ss_pred eEEcCCCChh---cHHHHHhcCCcEEEEcCCCCCCCchHhHhhhCCceEEEeeecCCCCCCCCCCHHHHHHHHHHHHhcC
Q 028110 64 IFRSGFPDSA---NFSFLQTLRLRSIIYLCPEPYPEANTEFLKSNGIKLFQFAIEGHKEPFVNIPEDMIREALKVLLDVR 140 (213)
Q Consensus 64 Lyrs~~p~~~---~~~~L~~lGIktVI~Lr~e~~~~~~~~~~~~~Gi~~~~ipi~d~~~p~~~i~~~~i~~al~~i~d~~ 140 (213)
+..+..+.+. -++.|+++||+ ++=|+.+.. ..-...+++.||+-++-.+. ++++++ .++.+.+ +
T Consensus 532 i~~~D~~R~~a~~aI~~L~~~Gi~-~~mLTGDn~-~~A~~iA~~lGId~v~Aell---------PedK~~-~V~~l~~-~ 598 (713)
T COG2217 532 IALADELRPDAKEAIAALKALGIK-VVMLTGDNR-RTAEAIAKELGIDEVRAELL---------PEDKAE-IVRELQA-E 598 (713)
T ss_pred EEEeCCCChhHHHHHHHHHHCCCe-EEEEcCCCH-HHHHHHHHHcChHhheccCC---------cHHHHH-HHHHHHh-c
Confidence 5566776654 56899999999 666777643 23345567789966654322 245554 5555553 3
Q ss_pred CCcEEEEcCCCCChHHHHHHHHH
Q 028110 141 NHPVLIHCKRGKHRTGCLVGCLR 163 (213)
Q Consensus 141 ~~PVLVHC~~Gk~RTG~vva~yl 163 (213)
+++|. ....|.+=+..++..-.
T Consensus 599 g~~Va-mVGDGINDAPALA~AdV 620 (713)
T COG2217 599 GRKVA-MVGDGINDAPALAAADV 620 (713)
T ss_pred CCEEE-EEeCCchhHHHHhhcCe
Confidence 44444 48999988877765544
No 302
>PLN02470 acetolactate synthase
Probab=20.15 E-value=6.7e+02 Score=24.11 Aligned_cols=38 Identities=13% Similarity=0.028 Sum_probs=26.2
Q ss_pred HHHHHhcCCcEEEEcCCCCCCCchHhHh-hhCCceEEEee
Q 028110 75 FSFLQTLRLRSIIYLCPEPYPEANTEFL-KSNGIKLFQFA 113 (213)
Q Consensus 75 ~~~L~~lGIktVI~Lr~e~~~~~~~~~~-~~~Gi~~~~ip 113 (213)
+..|+++||++|.-+-..... .+.+.+ +..||+++...
T Consensus 20 ~~~L~~~GV~~vFg~pG~~~~-~l~dal~~~~~i~~i~~r 58 (585)
T PLN02470 20 VEALEREGVDTVFAYPGGASM-EIHQALTRSNCIRNVLCR 58 (585)
T ss_pred HHHHHHcCCCEEEEcCCcccH-HHHHHHhccCCceEEEec
Confidence 478999999999999887433 223334 33478888653
No 303
>PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=20.14 E-value=4.7e+02 Score=21.12 Aligned_cols=70 Identities=10% Similarity=-0.015 Sum_probs=36.4
Q ss_pred HHHHHhcCCcEEEEcCCCCCC-CchHhHhhhCCceEEEeeecCCCCCCCCCCHHHHHHHHHHHHhcC-CCcEEEEcCCC
Q 028110 75 FSFLQTLRLRSIIYLCPEPYP-EANTEFLKSNGIKLFQFAIEGHKEPFVNIPEDMIREALKVLLDVR-NHPVLIHCKRG 151 (213)
Q Consensus 75 ~~~L~~lGIktVI~Lr~e~~~-~~~~~~~~~~Gi~~~~ipi~d~~~p~~~i~~~~i~~al~~i~d~~-~~PVLVHC~~G 151 (213)
...|.+.|.+.|+..+..... ......++..|-+...++.+-. ..+.+.++++.+.+.- .--++|||.+.
T Consensus 23 ~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~-------~~~~~~~~~~~~~~~~~~~d~vi~~ag~ 94 (252)
T PRK06077 23 AVRLAKEGSLVVVNAKKRAEEMNETLKMVKENGGEGIGVLADVS-------TREGCETLAKATIDRYGVADILVNNAGL 94 (252)
T ss_pred HHHHHHCCCEEEEEeCCChHHHHHHHHHHHHcCCeeEEEEeccC-------CHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 356778899877766543210 1111223333434333333221 1356666777665532 23599999864
No 304
>PRK06500 short chain dehydrogenase; Provisional
Probab=20.13 E-value=4.7e+02 Score=21.09 Aligned_cols=67 Identities=6% Similarity=-0.126 Sum_probs=34.8
Q ss_pred HHHHHhcCCcEEEEcCCCCCCCchHhHhhhCCceEEEeeecCCCCCCCCCCHHHHHHHHHHHHhcC-CCcEEEEcCCC
Q 028110 75 FSFLQTLRLRSIIYLCPEPYPEANTEFLKSNGIKLFQFAIEGHKEPFVNIPEDMIREALKVLLDVR-NHPVLIHCKRG 151 (213)
Q Consensus 75 ~~~L~~lGIktVI~Lr~e~~~~~~~~~~~~~Gi~~~~ipi~d~~~p~~~i~~~~i~~al~~i~d~~-~~PVLVHC~~G 151 (213)
...|.+.|.+.|+--|.++ ...+..++.|-+...+.++-. ..+.+..+++.+.+.. +--++|||.+.
T Consensus 23 a~~l~~~g~~v~~~~r~~~---~~~~~~~~~~~~~~~~~~D~~-------~~~~~~~~~~~~~~~~~~id~vi~~ag~ 90 (249)
T PRK06500 23 ARQFLAEGARVAITGRDPA---SLEAARAELGESALVIRADAG-------DVAAQKALAQALAEAFGRLDAVFINAGV 90 (249)
T ss_pred HHHHHHCCCEEEEecCCHH---HHHHHHHHhCCceEEEEecCC-------CHHHHHHHHHHHHHHhCCCCEEEECCCC
Confidence 3567788987555444321 122223333444433333221 1356666777665532 23589999754
No 305
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=20.10 E-value=3e+02 Score=20.75 Aligned_cols=70 Identities=16% Similarity=0.094 Sum_probs=40.8
Q ss_pred HHHhcCCcEEEEcCCC---CCCCchHhHhhhCCceEEEeeecCCCCCCCCCCHHHHHHHHHHHHhc-CCCcEEEEcCCCC
Q 028110 77 FLQTLRLRSIIYLCPE---PYPEANTEFLKSNGIKLFQFAIEGHKEPFVNIPEDMIREALKVLLDV-RNHPVLIHCKRGK 152 (213)
Q Consensus 77 ~L~~lGIktVI~Lr~e---~~~~~~~~~~~~~Gi~~~~ipi~d~~~p~~~i~~~~i~~al~~i~d~-~~~PVLVHC~~Gk 152 (213)
.|.+.|-+.|+-+... +........++..|.++.-++++-. +.+.++++++.+.+. ..--++|||....
T Consensus 19 ~l~~~g~~~v~~~~r~~~~~~~~~l~~~l~~~~~~~~~~~~D~~-------~~~~~~~~~~~~~~~~~~ld~li~~ag~~ 91 (167)
T PF00106_consen 19 ALARRGARVVILTSRSEDSEGAQELIQELKAPGAKITFIECDLS-------DPESIRALIEEVIKRFGPLDILINNAGIF 91 (167)
T ss_dssp HHHHTTTEEEEEEESSCHHHHHHHHHHHHHHTTSEEEEEESETT-------SHHHHHHHHHHHHHHHSSESEEEEECSCT
T ss_pred HHHhcCceEEEEeeeccccccccccccccccccccccccccccc-------ccccccccccccccccccccccccccccc
Confidence 4445566555555433 1111223334567777776665432 257888888888742 3345999997765
Q ss_pred C
Q 028110 153 H 153 (213)
Q Consensus 153 ~ 153 (213)
.
T Consensus 92 ~ 92 (167)
T PF00106_consen 92 S 92 (167)
T ss_dssp T
T ss_pred c
Confidence 3
Done!