BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028111
(213 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9FM67|TI205_ARATH Protein TIC 20-v, chloroplastic OS=Arabidopsis thaliana GN=TIC20-V
PE=2 SV=1
Length = 209
Score = 265 bits (677), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 125/168 (74%), Positives = 144/168 (85%)
Query: 46 NHHQTITTKSKKSDSADYPDRLISAICYFYPFFDGIQYGKYVITQFTPIQLLIQPLIPAI 105
+ T+ +SK DS D DR+ISA+CYFYPFFDGIQYGK++ITQ+ P Q+LIQPL PAI
Sbjct: 42 DRAATLVLQSKGDDSVDASDRIISAVCYFYPFFDGIQYGKFIITQYQPFQILIQPLFPAI 101
Query: 106 KVFKSFPFNGFLVFLTLYFVVVRNTNFSRYVRFNTMQAIVLDVLLIFPDLFERTFNAGEG 165
+ FKSFPFNGFL+F+TLYFVVVRN NFSRYVRFNTMQAIVLDVLLIFPDL ER+FN +G
Sbjct: 102 RAFKSFPFNGFLIFITLYFVVVRNPNFSRYVRFNTMQAIVLDVLLIFPDLLERSFNPRDG 161
Query: 166 IGLDLMMSLDSTVFLFLLVCLIYGSSSCMLGQVPRLPIVAEAADRQVL 213
GLD++MSLDSTVFLFLLV LIYG S+C+ G PRLP+VAEAADRQVL
Sbjct: 162 FGLDVVMSLDSTVFLFLLVSLIYGFSACLFGLTPRLPLVAEAADRQVL 209
>sp|O82251|TI202_ARATH Protein TIC 20-II, chloroplastic OS=Arabidopsis thaliana
GN=TIC20-II PE=2 SV=1
Length = 208
Score = 148 bits (373), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 83/214 (38%), Positives = 124/214 (57%), Gaps = 19/214 (8%)
Query: 2 TISNLLHSPQT-PLTLLHKPHNHHTRSSFLKSPSSSSFFTLTNKVNHHQTITTKSKKSDS 60
T++N L +P+ PL+L + S+F PSS LT + ++ T T
Sbjct: 11 TLTNPLSAPRCRPLSL-----SFPGSSTFSIRPSSRRATALTTRASYTPTPAT------- 58
Query: 61 ADYPDRLISAICYFYPFFDGIQYGKYVITQFTPIQLLIQPLIPAIKVFKSFPFNGFLVFL 120
+R+IS Y PFF+ +QYG+++ Q+ + LL +P+ P + +++S P+ F+ F
Sbjct: 59 ----ERVISIASYALPFFNSLQYGRFLFAQYPRLGLLFEPIFPILNLYRSVPYASFVAFF 114
Query: 121 TLYFVVVRNTNFSRYVRFNTMQAIVLDVLLIFPDLFERTFNAGE--GIGLDLMMSLDSTV 178
LY VVRNT+FSRYVRFN MQA+ LDVLL P L R + G+ G G+ MM + V
Sbjct: 115 GLYLGVVRNTSFSRYVRFNAMQAVTLDVLLAVPVLLTRILDPGQGGGFGMKAMMWGHTGV 174
Query: 179 FLFLLVCLIYGSSSCMLGQVPRLPIVAEAADRQV 212
F+F +C +YG S +LG+ P +P VA+AA RQ+
Sbjct: 175 FVFSFMCFVYGVVSSLLGKTPYIPFVADAAGRQL 208
>sp|P73387|YC60L_SYNY3 Tic20 family protein OS=Synechocystis sp. (strain PCC 6803 /
Kazusa) GN=sll1737 PE=3 SV=1
Length = 160
Score = 96.3 bits (238), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 53/158 (33%), Positives = 89/158 (56%), Gaps = 2/158 (1%)
Query: 56 KKSDSADYPDRLISAICYFYPFFDGIQYGKYVITQFTPIQLLIQPLIPAIKVFKSFPFNG 115
+ +AD DR SA+ Y P D +G +++ QF +Q++ P++P ++ + FPF
Sbjct: 2 ASNSTADGKDRFFSALIYVIPLIDAFMFGGFLLQQFPVLQIIYLPIMPLLQFYYQFPFAS 61
Query: 116 FLVFLTLYFVVVRNTNFSRYVRFNTMQAIVLDVLL-IFPDLFERTFNAGEGIGLDLMMSL 174
F++F+ L+ VVRN N S ++RFN MQAI++ +LL +F + G GL + +L
Sbjct: 62 FIIFIVLFMAVVRNNNISHFIRFNAMQAILIGILLSLFGLIVAYVIQPVFGQGL-VTETL 120
Query: 175 DSTVFLFLLVCLIYGSSSCMLGQVPRLPIVAEAADRQV 212
+ FL L C +G +LG+ +P +++AA QV
Sbjct: 121 YNFAFLGALACGFFGIVQSVLGRYAEIPTISDAAYSQV 158
>sp|P51360|YCF60_PORPU Tic20 family protein Ycf60 OS=Porphyra purpurea GN=ycf60 PE=3 SV=1
Length = 203
Score = 64.3 bits (155), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 56/192 (29%), Positives = 96/192 (50%), Gaps = 32/192 (16%)
Query: 35 SSSFFTLTNKVNHHQTITTKSKKSDSADYPDRLISAICYFYPFFDGIQ-YGKYVITQF-- 91
+ + TL +N TT+SK S RL+S I Y+ P F+G+Q +G+YV+ +
Sbjct: 25 AYKYITLNTNIN-----TTESKTRLSI----RLVSIIPYYLPLFEGLQNFGQYVLPDYPV 75
Query: 92 TPIQLLIQPLIPAIKVFKSFPFNGFLVFLTLYFVVVRNTN---FSRYVRFNTMQAIVL-- 146
I L + L+P + + + G + F LY+V+VRN + + VRFN+MQ+I+L
Sbjct: 76 GAIPLYKKILLPMLIFYMNHAILGLVTFFALYYVLVRNKSPITVHQLVRFNSMQSILLFL 135
Query: 147 ------DVLLIFPDLFERTFNAGEGIGLDLMMSLDSTVFLFLLVCLIYGSSSCMLGQVPR 200
+ FP F +F IGL ++ + +F F+L + Y + G+
Sbjct: 136 VGSLFGAIFRAFPIEFRISF-----IGL----TVCNMMFWFILSTITYSIVKAIQGKYSN 186
Query: 201 LPIVAEAADRQV 212
+P+++EA Q+
Sbjct: 187 IPVISEAVRIQI 198
>sp|Q1XDC7|YCF60_PORYE Tic20 family protein Ycf60 OS=Porphyra yezoensis GN=ycf60 PE=3 SV=1
Length = 203
Score = 62.0 bits (149), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 54/190 (28%), Positives = 94/190 (49%), Gaps = 32/190 (16%)
Query: 37 SFFTLTNKVNHHQTITTKSKKSDSADYPDRLISAICYFYPFFDGIQ-YGKYVITQF--TP 93
+ L K+N+ T+SK S RL+S + Y+ P F+G+Q +G+YV+ +
Sbjct: 27 KYIKLNKKINN-----TESKTRLSI----RLVSTVPYYLPLFEGLQNFGQYVLPDYPVAA 77
Query: 94 IQLLIQPLIPAIKVFKSFPFNGFLVFLTLYFVVVRNTN---FSRYVRFNTMQAIVL---- 146
I L + ++P + + + G + F LY+V+VRN + + VRFN+MQ+I+L
Sbjct: 78 IPLYKKIILPMLIFYMNHAILGLVTFFALYYVLVRNKSPIPVHQLVRFNSMQSILLFLVG 137
Query: 147 ----DVLLIFPDLFERTFNAGEGIGLDLMMSLDSTVFLFLLVCLIYGSSSCMLGQVPRLP 202
V FP F +F L LM+ + +F F+L + Y + G+ +P
Sbjct: 138 SLFGAVFRAFPIEFRISF-------LGLMVC--NMMFWFVLSTITYSIVKAVQGKYSNIP 188
Query: 203 IVAEAADRQV 212
+++EA Q+
Sbjct: 189 VISEAVRIQI 198
>sp|O19916|YCF60_CYACA Tic20 family protein Ycf60 OS=Cyanidium caldarium GN=ycf60 PE=3
SV=1
Length = 205
Score = 61.2 bits (147), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 50/165 (30%), Positives = 81/165 (49%), Gaps = 11/165 (6%)
Query: 55 SKKSDSADYPD---RLISAICYFYPFFDGI-QYGKYVITQFTPIQLLIQPLIPAIKV-FK 109
S K DYP R IS + YF P +GI Q+G I + I+++ + + I V +
Sbjct: 39 SNKVYKEDYPSIMARAISCLIYFLPLLEGIAQFGIVCIDDHSWIRIIYKNTLAYIVVPYL 98
Query: 110 SFPFNGFLVFLTLYFVVVRN-TNFSRYVRFNTMQAIVLDVL--LIFPDLFERTFNAGEGI 166
P GF +F+TLY + VR S++++F+ +QA++L +L +I L G
Sbjct: 99 ESPLIGFCIFITLYLIFVRGIIQISKFIKFHIVQALLLYLLDSVIGTVLTSLPLEIGYSF 158
Query: 167 GLDLMMSLDSTVFLFLLVCLIYGSSSCMLGQVPRLPIVAEAADRQ 211
D L T+ L + IY + + GQ +P+++EAA Q
Sbjct: 159 IGD---RLADTLLLITFMISIYAGTDALKGQYSNIPLISEAAKMQ 200
>sp|Q6B923|YCF60_GRATL Tic20 family protein Ycf60 OS=Gracilaria tenuistipitata var. liui
GN=ycf60 PE=3 SV=2
Length = 204
Score = 54.3 bits (129), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 89/176 (50%), Gaps = 17/176 (9%)
Query: 48 HQTITTKSKKSDSADYPDRLISAICYFYPFFDGIQ-YGKYVITQ--FTPIQLLIQPLIPA 104
H + K+ + DRL S + Y+ P +G+Q +G+ ++ F +Q+ + L+P
Sbjct: 31 HIAQSYKNHDVNDITIVDRLGSILPYWLPLLEGLQNFGQQILPDYPFNVMQIYKKTLMPL 90
Query: 105 IKVFKSFPFNGFLVFLTLYFVVVRNTN---FSRYVRFNTMQAIVLDVLLIFPDLFERTFN 161
+ + + P ++F LY++ VRN + ++RFN +Q+I +L + L TF
Sbjct: 91 VIFYVTHPTLAVIIFFILYYLFVRNKSPIPDRPFIRFNVLQSI---LLFLINSLLGATFR 147
Query: 162 AGEGIGLDLMMSLD-----STVFLFLLVCLIYGSSSCMLGQVPRLPIVAEAADRQV 212
A + ++ MSL +T+F F+L + Y + G+ ++P++++A Q+
Sbjct: 148 A---LPIEFRMSLYGLMMCNTLFWFVLSTISYSIIKSIEGKYAKIPVISQAVRIQI 200
>sp|Q85G30|YCF60_CYAME Tic20 family protein Ycf60 OS=Cyanidioschyzon merolae GN=ycf60 PE=3
SV=1
Length = 197
Score = 45.4 bits (106), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 58/111 (52%), Gaps = 10/111 (9%)
Query: 107 VFKSFPFNGFLVFLTLYFVVVRNT-NFSRYVRFNTMQAIVLDVLLIFPDLFERTFNAGEG 165
V+ ++P GF++F YF++VR + VRF+ QA+++ +L + NA
Sbjct: 84 VYSTYPILGFMIFFMSYFLLVRGILQVRKKVRFHVSQALIIYLL---TSIIGSLLNALPE 140
Query: 166 IGLDLMMSLDST----VFLFLLVCLIYGSSSCMLGQVPRLPIVAEAADRQV 212
+ LM ST +F+ + +IY S G++ RLP+++EAA QV
Sbjct: 141 --MILMGWFGSTCLDILFILTMGSVIYASYQVWNGELTRLPLISEAAKLQV 189
>sp|Q9ZST8|TIC20_PEA Protein TIC 20, chloroplastic OS=Pisum sativum GN=TIC20 PE=1 SV=1
Length = 253
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/183 (23%), Positives = 71/183 (38%), Gaps = 25/183 (13%)
Query: 48 HQTITTKSKKSDSAD-----------YPDRLISAICYFYPFFDGIQYGK--YVITQFTP- 93
H++ TT DS+ + R +S I Y PF Y + Y + F P
Sbjct: 75 HKSSTTPRATKDSSGFRFPPMTKKPRWWWRTLSCIPYLLPFHQAWMYARTAYHLHPFIPY 134
Query: 94 IQLLIQPLIPAIKVFKSFPFNGFLVFLTLYFVVVRNTNFSRYVRFNTMQAIVLDVLL--- 150
Q + P + AI + + FL Y +VR + + RF+ +++++ L
Sbjct: 135 FQPMTYPFLMAIGTLPRWSLIAY--FLIAYLTIVRRKEWPHFFRFHVAVGMLIEIALQVT 192
Query: 151 -IFPDLFERTFNAGEGIGLDLMMSLDSTVFLFLLVCLIYGSSSCMLGQVPRLPIVAEAAD 209
I R+F G+ L M +T F L I ++G +P V +AA
Sbjct: 193 GIVSRWMPRSFYWGK-----LGMHFWTTAFFVFLFTTIECIRCALVGMYADVPFVCDAAY 247
Query: 210 RQV 212
Q+
Sbjct: 248 IQI 250
>sp|B3CRT6|GCP_ORITI Probable tRNA threonylcarbamoyladenosine biosynthesis protein Gcp
OS=Orientia tsutsugamushi (strain Ikeda) GN=gcp PE=3
SV=1
Length = 344
Score = 34.7 bits (78), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 29/48 (60%)
Query: 90 QFTPIQLLIQPLIPAIKVFKSFPFNGFLVFLTLYFVVVRNTNFSRYVR 137
Q+T +Q+L+ I AIK+F+S+ N F + YFV+ ++Y+R
Sbjct: 240 QYTVVQILLCRSINAIKLFESYCSNNFKINRKNYFVISGGVAANQYLR 287
>sp|A5CE49|GCP_ORITB Probable tRNA threonylcarbamoyladenosine biosynthesis protein Gcp
OS=Orientia tsutsugamushi (strain Boryong) GN=gcp PE=3
SV=1
Length = 344
Score = 34.7 bits (78), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 29/48 (60%)
Query: 90 QFTPIQLLIQPLIPAIKVFKSFPFNGFLVFLTLYFVVVRNTNFSRYVR 137
Q+T +Q+L+ I AIK+F+S+ N F + YFV+ ++Y+R
Sbjct: 240 QYTVVQILLCRSINAIKLFESYCSNNFKINRKNYFVISGGVAANQYLR 287
>sp|Q9JH69|NS1AB_TASV1 Non-structural polyprotein 1AB OS=Turkey astrovirus 1 GN=ORF1 PE=3
SV=3
Length = 1611
Score = 31.2 bits (69), Expect = 5.0, Method: Composition-based stats.
Identities = 25/83 (30%), Positives = 33/83 (39%), Gaps = 23/83 (27%)
Query: 19 KPHNH------HTR----------------SSFLKSPSSSSFFTLTNKVNHHQTITTKSK 56
+PHNH HTR S LK P S+ F ++ H +TT SK
Sbjct: 1040 RPHNHKMCRDRHTRRFCFWCGVVHSDVEGHSRDLKCPKCSAGFANLREMEQH-AVTTCSK 1098
Query: 57 KSDSADYPDRLISAICYFYPFFD 79
K DS P R+ + + FD
Sbjct: 1099 KLDSHPEPSRVFQPLDFGLGIFD 1121
>sp|Q9ZQZ9|TI204_ARATH Protein TIC 20-IV, chloroplastic OS=Arabidopsis thaliana
GN=TIC20-IV PE=2 SV=1
Length = 284
Score = 30.8 bits (68), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 48/109 (44%), Gaps = 12/109 (11%)
Query: 111 FPFNGFLVFLTL-YFVVVRNTNFSRYVRFNTMQAIVLD----VLLIFPDLFERTFNAGEG 165
+P F+V+ L Y VV+N Y+RF+ M ++L+ V+ + F G
Sbjct: 171 WPTWFFMVYCYLGYMWVVKNKELPHYLRFHMMMGMLLETALQVIWCTSNFFPLIHFKGR- 229
Query: 166 IGLDLMMSLDSTVFLFLLVCLIYGSSSCMLGQV-PRLPIVAEAADRQVL 213
G+ M++ T LL C+ C L V ++P + +AA L
Sbjct: 230 FGMYYWMAIGFTYICLLLECI-----RCALAGVYAQIPFMTDAASIHTL 273
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.328 0.141 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 75,582,144
Number of Sequences: 539616
Number of extensions: 2988360
Number of successful extensions: 8985
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 8964
Number of HSP's gapped (non-prelim): 16
length of query: 213
length of database: 191,569,459
effective HSP length: 113
effective length of query: 100
effective length of database: 130,592,851
effective search space: 13059285100
effective search space used: 13059285100
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 59 (27.3 bits)