Query 028111
Match_columns 213
No_of_seqs 125 out of 177
Neff 5.1
Searched_HMMs 29240
Date Mon Mar 25 10:10:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028111.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028111hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3th5_A RAS-related C3 botulinu 18.3 38 0.0013 25.8 0.0 24 45-68 28-51 (204)
2 3ibp_A Chromosome partition pr 10.5 75 0.0026 28.3 0.8 15 197-211 210-224 (302)
3 2wmm_A Chromosome partition pr 9.9 83 0.0028 25.5 0.8 15 197-211 129-143 (162)
4 2p5s_A RAS and EF-hand domain 8.7 63 0.0022 24.5 -0.4 22 48-69 29-50 (199)
5 2pqn_B Mitochondrial division 6.7 1.2E+02 0.0043 20.3 0.4 18 194-211 32-49 (54)
6 3j1z_P YIIP, cation efflux fam 6.1 8.6E+02 0.029 20.3 5.6 29 131-159 6-34 (306)
7 2gpv_G Nuclear receptor corepr 5.6 2E+02 0.007 16.3 0.8 11 190-200 9-19 (26)
8 3l0i_B RAS-related protein RAB 4.3 2.6E+02 0.0089 20.9 1.0 21 48-68 34-54 (199)
9 3ssc_A ECOKMCRBC, 5-methylcyto 4.3 1.2E+02 0.0041 24.8 -1.1 11 195-205 41-51 (170)
10 3lf6_A Putative phosphotransfe 4.2 73 0.0025 24.5 -2.4 10 138-147 6-15 (161)
No 1
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=18.26 E-value=38 Score=25.83 Aligned_cols=24 Identities=0% Similarity=-0.190 Sum_probs=18.2
Q ss_pred ccccccccccCCCCCCCChhhHHH
Q 028111 45 VNHHQTITTKSKKSDSADYPDRLI 68 (213)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~R~l 68 (213)
.+.-+..+.++.|.|++++..|+.
T Consensus 28 ~~~~ki~v~G~~~~GKSsli~~l~ 51 (204)
T 3th5_A 28 GQAIKCVVVGDGAVGKTCLLISYT 51 (204)
Confidence 334557788888999999987775
No 2
>3ibp_A Chromosome partition protein MUKB; structural maintenance of chromosomes, SMC, condensin, chromosome segregation, hinge, dimerization domain; 3.10A {Escherichia coli}
Probab=10.52 E-value=75 Score=28.26 Aligned_cols=15 Identities=27% Similarity=0.620 Sum_probs=10.3
Q ss_pred CCCCCcchhHHHhhh
Q 028111 197 QVPRLPIVAEAADRQ 211 (213)
Q Consensus 197 ~y~~IP~IseAA~~Q 211 (213)
++|++|++|+||+.+
T Consensus 210 r~Pe~PlfGraARE~ 224 (302)
T 3ibp_A 210 RFPEVPLFGRAARES 224 (302)
T ss_dssp ECCSSCSSCHHHHHH
T ss_pred CCCCCCcccHHHHHH
Confidence 467777777777654
No 3
>2wmm_A Chromosome partition protein MUKB; cell division, DNA condensation, nucleotide-binding, cell cycle, coiled coil, ATP-binding, DNA-binding, SMC; 2.30A {Escherichia coli}
Probab=9.89 E-value=83 Score=25.52 Aligned_cols=15 Identities=27% Similarity=0.620 Sum_probs=10.0
Q ss_pred CCCCCcchhHHHhhh
Q 028111 197 QVPRLPIVAEAADRQ 211 (213)
Q Consensus 197 ~y~~IP~IseAA~~Q 211 (213)
+++++|++|.||+.+
T Consensus 129 r~P~~PlfGraARE~ 143 (162)
T 2wmm_A 129 RFPEVPLFGRAARES 143 (162)
T ss_dssp ECCSSCSSCHHHHHH
T ss_pred cCCCcccccHHHHHH
Confidence 456777777777654
No 4
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=8.68 E-value=63 Score=24.50 Aligned_cols=22 Identities=9% Similarity=0.123 Sum_probs=17.5
Q ss_pred cccccccCCCCCCCChhhHHHH
Q 028111 48 HQTITTKSKKSDSADYPDRLIS 69 (213)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~R~lA 69 (213)
.+..+.++.+.|++++..|+..
T Consensus 29 ~ki~v~G~~~~GKSsli~~l~~ 50 (199)
T 2p5s_A 29 YKIVLAGDAAVGKSSFLMRLCK 50 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHHh
Confidence 4577888889999998888753
No 5
>2pqn_B Mitochondrial division protein 1; TPR domain, protein-protein complex, apoptosis; 2.15A {Saccharomyces cerevisiae}
Probab=6.69 E-value=1.2e+02 Score=20.27 Aligned_cols=18 Identities=28% Similarity=0.342 Sum_probs=13.1
Q ss_pred hcCCCCCCcchhHHHhhh
Q 028111 194 MLGQVPRLPIVAEAADRQ 211 (213)
Q Consensus 194 l~G~y~~IP~IseAA~~Q 211 (213)
++|=.+.+|+|-|+.+.|
T Consensus 32 fQGFeaSLPiinetie~~ 49 (54)
T 2pqn_B 32 FQGFKSYLPIAELAIENT 49 (54)
T ss_pred HhhhhhhhhHHHHHHHhh
Confidence 466677888888877654
No 6
>3j1z_P YIIP, cation efflux family protein; zinc transporter, secondary transporter, alternating access mechanism, metal transport; 13.00A {Shewanella oneidensis}
Probab=6.06 E-value=8.6e+02 Score=20.32 Aligned_cols=29 Identities=14% Similarity=0.284 Sum_probs=17.8
Q ss_pred CCCcchhhHHHHHHHHHHHHHHHHHHHHh
Q 028111 131 NFSRYVRFNTMQAIVLDVLLIFPDLFERT 159 (213)
Q Consensus 131 ~~s~FVRFnaMQAILLdI~L~l~~li~~~ 159 (213)
+....+|.-+.-|+...+++.+.-++..+
T Consensus 6 ~~~~~vr~a~~~si~~n~~l~~~k~~ag~ 34 (306)
T 3j1z_P 6 QYDFWVKLASRASVATALTLITIKLLAWL 34 (306)
T ss_dssp TTTCCSSTTHHHHHHHHHHHTHHHHHTCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555676666777776666665555443
No 7
>2gpv_G Nuclear receptor corepressor 2; estrogen related receptor, ERR, ERRG, ESRRG, nuclear recepto steroid receptor, SMRT, tamoxifen, transcription; HET: OHT; 2.85A {Homo sapiens}
Probab=5.59 E-value=2e+02 Score=16.34 Aligned_cols=11 Identities=9% Similarity=0.365 Sum_probs=9.1
Q ss_pred HHHHhcCCCCC
Q 028111 190 SSSCMLGQVPR 200 (213)
Q Consensus 190 ~~~al~G~y~~ 200 (213)
+++|+.|+|.+
T Consensus 9 irkalmg~yd~ 19 (26)
T 2gpv_G 9 IRKALMGKYDQ 19 (26)
T ss_pred HHHHHccchhh
Confidence 57899999875
No 8
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=4.34 E-value=2.6e+02 Score=20.90 Aligned_cols=21 Identities=5% Similarity=-0.059 Sum_probs=16.2
Q ss_pred cccccccCCCCCCCChhhHHH
Q 028111 48 HQTITTKSKKSDSADYPDRLI 68 (213)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~R~l 68 (213)
-+..+.++.+.|++++..|+.
T Consensus 34 ~ki~vvG~~~~GKSsli~~l~ 54 (199)
T 3l0i_B 34 FKLLLIGDSGVGKSCLLLRFA 54 (199)
T ss_dssp EEEEEECCTTSCCTTTTTSSB
T ss_pred eEEEEECCCCCCHHHHHHHHh
Confidence 456778888888888888764
No 9
>3ssc_A ECOKMCRBC, 5-methylcytosine-specific restriction enzyme B; protein-DNA complex; HET: DNA 5CM; 2.10A {Escherichia coli} PDB: 3ssd_A* 3sse_A*
Probab=4.27 E-value=1.2e+02 Score=24.83 Aligned_cols=11 Identities=27% Similarity=0.558 Sum_probs=7.1
Q ss_pred cCCCCCCcchh
Q 028111 195 LGQVPRLPIVA 205 (213)
Q Consensus 195 ~G~y~~IP~Is 205 (213)
+|.++++|+|+
T Consensus 41 qGn~A~IPWia 51 (170)
T 3ssc_A 41 YGNFTSIPWFA 51 (170)
T ss_dssp SSSEEEEEEEE
T ss_pred CCccccCcEEE
Confidence 46666777664
No 10
>3lf6_A Putative phosphotransferase system; epitope-scaffold, immune system; 1.90A {Artificial gene} SCOP: d.112.1.1 PDB: 1xiz_A
Probab=4.24 E-value=73 Score=24.50 Aligned_cols=10 Identities=40% Similarity=0.517 Sum_probs=6.7
Q ss_pred hHHHHHHHHH
Q 028111 138 FNTMQAIVLD 147 (213)
Q Consensus 138 FnaMQAILLd 147 (213)
-|+||+|+++
T Consensus 6 ~~~~~~~ll~ 15 (161)
T 3lf6_A 6 HNAMQGIHFR 15 (161)
T ss_dssp -CHHHHCBCC
T ss_pred cchhhceEeC
Confidence 4788887764
Done!