Query 028111
Match_columns 213
No_of_seqs 125 out of 177
Neff 5.1
Searched_HMMs 13730
Date Mon Mar 25 10:10:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028111.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/028111hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1tf3a3 g.37.1.1 (A:71-101) Tr 4.9 34 0.0024 18.8 -1.4 8 134-141 23-30 (31)
2 d2hmfa2 d.58.18.10 (A:404-470) 4.5 2.2E+02 0.016 17.2 2.3 23 50-72 4-26 (67)
3 d1nuba2 g.3.11.3 (A:53-77) Dom 4.3 1.2E+02 0.0085 15.9 0.6 7 20-26 2-9 (26)
4 d1ciya3 f.1.3.1 (A:33-255) del 3.7 2.4E+02 0.017 21.1 2.3 21 146-166 4-24 (223)
5 d1l8ya_ a.21.1.1 (A:) Nucleola 3.4 1E+02 0.0073 20.5 -0.3 16 196-211 45-60 (84)
6 d1mska_ d.173.1.1 (A:) Methion 3.0 2E+02 0.015 23.4 1.2 18 193-210 55-75 (327)
7 d3gtub1 a.45.1.1 (B:85-224) Cl 2.7 4.6E+02 0.033 17.0 2.8 35 59-99 70-105 (140)
8 d1h9aa1 c.2.1.3 (A:1-181,A:413 2.5 1.5E+02 0.011 22.0 -0.2 14 16-29 145-158 (195)
9 d1qkia1 c.2.1.3 (A:12-199,A:43 2.3 1.6E+02 0.012 22.1 -0.3 13 16-28 157-169 (203)
10 d2pmra1 a.8.11.1 (A:3-77) Unch 2.3 5E+02 0.037 16.5 2.4 20 64-83 51-70 (75)
No 1
>d1tf3a3 g.37.1.1 (A:71-101) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}
Probab=4.91 E-value=34 Score=18.81 Aligned_cols=8 Identities=25% Similarity=0.808 Sum_probs=4.5
Q ss_pred cchhhHHH
Q 028111 134 RYVRFNTM 141 (213)
Q Consensus 134 ~FVRFnaM 141 (213)
||-|||-.
T Consensus 23 hfnrfhn~ 30 (31)
T d1tf3a3 23 HFNRFHNI 30 (31)
T ss_dssp HHHHHTTT
T ss_pred HHhhhccC
Confidence 56666643
No 2
>d2hmfa2 d.58.18.10 (A:404-470) Aspartokinase {Methanococcus jannaschii [TaxId: 2190]}
Probab=4.49 E-value=2.2e+02 Score=17.23 Aligned_cols=23 Identities=4% Similarity=0.134 Sum_probs=18.9
Q ss_pred cccccCCCCCCCChhhHHHHHHH
Q 028111 50 TITTKSKKSDSADYPDRLISAIC 72 (213)
Q Consensus 50 ~~~~~~~~~~~~~~~~R~lA~Lp 72 (213)
..++++..++.+.+..|++.+|.
T Consensus 4 vsvvG~gm~~~~gi~arif~~L~ 26 (67)
T d2hmfa2 4 ISVVGAGMRGAKGIAGKIFTAVS 26 (67)
T ss_dssp EEEECTTTTTCTTHHHHHHHHHH
T ss_pred EEEEeCCCCCCccHHHHHHHHHH
Confidence 35677788999999999999874
No 3
>d1nuba2 g.3.11.3 (A:53-77) Domain of BM-40/SPARC/osteonectin {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.27 E-value=1.2e+02 Score=15.95 Aligned_cols=7 Identities=57% Similarity=1.156 Sum_probs=3.7
Q ss_pred CC-CCCCC
Q 028111 20 PH-NHHTR 26 (213)
Q Consensus 20 ~~-~~~~~ 26 (213)
|| |||-.
T Consensus 2 pclnhhck 9 (26)
T d1nuba2 2 PCQNHHCK 9 (26)
T ss_dssp TTTTCCCC
T ss_pred cccccccc
Confidence 45 66643
No 4
>d1ciya3 f.1.3.1 (A:33-255) delta-Endotoxin (insectocide), N-terminal domain {Bacillus thuringiensis, CRYIA (A) [TaxId: 1428]}
Probab=3.73 E-value=2.4e+02 Score=21.06 Aligned_cols=21 Identities=24% Similarity=0.539 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHhhccccch
Q 028111 146 LDVLLIFPDLFERTFNAGEGI 166 (213)
Q Consensus 146 LdI~L~l~~li~~~fip~~G~ 166 (213)
+|+.+.+.+.+.+.++|..|.
T Consensus 4 ~~i~~~~~~~ll~~~iP~~g~ 24 (223)
T d1ciya3 4 IDISLSLTQFLLSEFVPGAGF 24 (223)
T ss_dssp HHHHHHHHHHHHHCCSSSHHH
T ss_pred hhhHHHHHHHHhhhcCCchHH
Confidence 567777777777766776663
No 5
>d1l8ya_ a.21.1.1 (A:) Nucleolar transcription factor 1 (Upstream binding factor 1, UBF-1) {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.44 E-value=1e+02 Score=20.47 Aligned_cols=16 Identities=25% Similarity=0.310 Sum_probs=13.1
Q ss_pred CCCCCCcchhHHHhhh
Q 028111 196 GQVPRLPIVAEAADRQ 211 (213)
Q Consensus 196 G~y~~IP~IseAA~~Q 211 (213)
-+..+||+|-.|||.|
T Consensus 45 eKkEki~wikkaaedq 60 (84)
T d1l8ya_ 45 EKKEKLMWIKKAAEDQ 60 (84)
T ss_dssp GGGHHHHHHHHHHHHH
T ss_pred hhhhhhHHHHHHHHHH
Confidence 4556899999999987
No 6
>d1mska_ d.173.1.1 (A:) Methionine synthase SAM-binding domain {Escherichia coli [TaxId: 562]}
Probab=3.00 E-value=2e+02 Score=23.41 Aligned_cols=18 Identities=33% Similarity=0.674 Sum_probs=13.4
Q ss_pred HhcCCCCCC---cchhHHHhh
Q 028111 193 CMLGQVPRL---PIVAEAADR 210 (213)
Q Consensus 193 al~G~y~~I---P~IseAA~~ 210 (213)
-+.|+|++| |.+++.|+.
T Consensus 55 ~L~GkyP~Il~d~~~GeeA~k 75 (327)
T d1mska_ 55 SLAGKYPRILEDEVVGVEAQR 75 (327)
T ss_dssp TCCSCTTGGGGCTTTHHHHHH
T ss_pred ccCCCCcccccCcchhhhhhh
Confidence 378888877 788887754
No 7
>d3gtub1 a.45.1.1 (B:85-224) Class mu GST {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.70 E-value=4.6e+02 Score=16.98 Aligned_cols=35 Identities=11% Similarity=0.358 Sum_probs=23.5
Q ss_pred CCCChhhHHHHHHHHHhhhhhhhh-hhHHHHhhchhhHHhHh
Q 028111 59 DSADYPDRLISAICYFYPFFDGIQ-YGKYVITQFTPIQLLIQ 99 (213)
Q Consensus 59 ~~~~~~~R~lA~LpYlLPL~d~l~-fg~~l~~~fP~l~~l~~ 99 (213)
++.|+.| .|+...++.+. ++...++.||-+..+..
T Consensus 70 d~~T~AD------~~l~~~l~~~~~~~~~~~~~~P~L~~~~~ 105 (140)
T d3gtub1 70 EKLTFVD------FLTYDILDQNRIFDPKCLDEFPNLKAFMC 105 (140)
T ss_dssp SSCCHHH------HHHHHHHHHHHHHCGGGGTTCHHHHHHHH
T ss_pred CCcchhH------HHHHHHHHHHHHcCccchhcChHHHHHHH
Confidence 5677777 34444455443 56778899998887764
No 8
>d1h9aa1 c.2.1.3 (A:1-181,A:413-426) Glucose 6-phosphate dehydrogenase, N-terminal domain {Leuconostoc mesenteroides [TaxId: 1245]}
Probab=2.55 E-value=1.5e+02 Score=21.96 Aligned_cols=14 Identities=14% Similarity=0.351 Sum_probs=11.2
Q ss_pred cccCCCCCCCCCcc
Q 028111 16 LLHKPHNHHTRSSF 29 (213)
Q Consensus 16 ~~~~~~~~~~~~~~ 29 (213)
..-||+||+..|..
T Consensus 145 VvEKPfG~Dl~SA~ 158 (195)
T d1h9aa1 145 MIEKPFGTSYDTAA 158 (195)
T ss_dssp EECSCSCSSHHHHH
T ss_pred EEeCCccCCHHHHH
Confidence 46799999988773
No 9
>d1qkia1 c.2.1.3 (A:12-199,A:435-449) Glucose 6-phosphate dehydrogenase, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.34 E-value=1.6e+02 Score=22.07 Aligned_cols=13 Identities=31% Similarity=0.557 Sum_probs=10.4
Q ss_pred cccCCCCCCCCCc
Q 028111 16 LLHKPHNHHTRSS 28 (213)
Q Consensus 16 ~~~~~~~~~~~~~ 28 (213)
..-||+||+..|.
T Consensus 157 VvEKPfG~Dl~SA 169 (203)
T d1qkia1 157 IVEKPFGRDLQSS 169 (203)
T ss_dssp EESCCCCSCHHHH
T ss_pred EEecCCCCChHHH
Confidence 4579999988776
No 10
>d2pmra1 a.8.11.1 (A:3-77) Uncharacterized protein MTH1690 {Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=2.32 E-value=5e+02 Score=16.49 Aligned_cols=20 Identities=15% Similarity=0.220 Sum_probs=17.3
Q ss_pred hhHHHHHHHHHhhhhhhhhh
Q 028111 64 PDRLISAICYFYPFFDGIQY 83 (213)
Q Consensus 64 ~~R~lA~LpYlLPL~d~l~f 83 (213)
..|.++|+.|-=.|+|++.+
T Consensus 51 ~v~A~~~i~YA~g~lDAlr~ 70 (75)
T d2pmra1 51 HITSFGCITYAHGLLDSLRM 70 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999765
Done!