BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028112
(213 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O49668|PAM68_ARATH Protein PAM68, chloroplastic OS=Arabidopsis thaliana GN=PAM68 PE=1
SV=1
Length = 214
Score = 202 bits (514), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 124/218 (56%), Positives = 157/218 (72%), Gaps = 11/218 (5%)
Query: 1 MAAIAWPYKLSPKVDCSHEYSKSVKKLTITPHYLSFSSSSTEQNIKFPVSKTNHLSNTTA 60
MA++ +KLS S + + K+ + L T+ + ++ N L +
Sbjct: 1 MASVPCSFKLSAHRRSSSKLDGNNKQCSSLVERLR---DKTKSQVPKSITCINRL-EISR 56
Query: 61 NSPLYATLNGPRGFGPPPKKTKKAKKPKTGNDSDDDEDEEGDEA-------EAGVIPEIV 113
+PL+AT+N P+GFGPPPKKTKK+KKPK GN SD+D+D+E ++ E GVIPEIV
Sbjct: 57 IAPLHATMNSPKGFGPPPKKTKKSKKPKPGNQSDEDDDDEDEDDDDEEDERERGVIPEIV 116
Query: 114 TNRMISRIGFTVGIPLLVGLLFFPFFYYLKVVLKIDVPSWLPVIVSFIFFGAALLGVNYG 173
TNRMISR+GFTVG+PL +GLLFFPFFYYLKV LK+DVP+W+P IVSF+FFG AL GV+YG
Sbjct: 117 TNRMISRMGFTVGLPLFIGLLFFPFFYYLKVGLKVDVPTWVPFIVSFVFFGTALAGVSYG 176
Query: 174 IVSSSWDPLREGSLLGWNEAQRNWPVFWQSLWSGGGSR 211
IVSSSWDPLREGSLLGWNEA++NWPVFWQS W+ R
Sbjct: 177 IVSSSWDPLREGSLLGWNEAKKNWPVFWQSFWNSSDKR 214
>sp|Q9LTD9|Y5278_ARATH Uncharacterized protein PAM68-like OS=Arabidopsis thaliana
GN=At5g52780 PE=2 SV=1
Length = 168
Score = 70.5 bits (171), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 51/90 (56%)
Query: 113 VTNRMISRIGFTVGIPLLVGLLFFPFFYYLKVVLKIDVPSWLPVIVSFIFFGAALLGVNY 172
V RM+ RI +VG PL +G+ LK DVP W+P + + + FG++ LG+ Y
Sbjct: 76 VFERMMGRIVVSVGTPLGLGVAILKVLEVLKDRNVWDVPLWVPYLTTLVTFGSSALGIAY 135
Query: 173 GIVSSSWDPLREGSLLGWNEAQRNWPVFWQ 202
G +S++ DP + SL G EA+ NW W+
Sbjct: 136 GSLSTNLDPAKTNSLFGLKEAKENWVEMWK 165
>sp|Q3UTY6|THSD4_MOUSE Thrombospondin type-1 domain-containing protein 4 OS=Mus musculus
GN=Thsd4 PE=1 SV=2
Length = 1018
Score = 35.4 bits (80), Expect = 0.26, Method: Composition-based stats.
Identities = 23/87 (26%), Positives = 42/87 (48%), Gaps = 7/87 (8%)
Query: 7 PYKLSPKVDCSHEYSKSVKKLTITPHYLSFSSSSTEQNIKFPVSKTNHLSNTTANSPLYA 66
PY L + D +H + ++ + H S +S+++Q + P + +H + PLY
Sbjct: 173 PYILPLQTDTTHTPQRLRRQRPSSRHSRSQEASASKQGYRPPTHQFSH------SQPLYQ 226
Query: 67 TLNGPRGFGPPPKKTKKAKKPKTGNDS 93
+ +GPR G PP + + P T + S
Sbjct: 227 SDSGPRS-GLPPSEASIYQLPLTHDQS 252
>sp|Q5GT33|RUVB_WOLTR Holliday junction ATP-dependent DNA helicase RuvB OS=Wolbachia
sp. subsp. Brugia malayi (strain TRS) GN=ruvB PE=3 SV=1
Length = 326
Score = 33.1 bits (74), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 6/64 (9%)
Query: 14 VDCSHEYSKSVKKLTITPHYLS--FSSSSTEQNIKFPVSKTNHLSNTTANSPLYATLNGP 71
+ CS EY++ V+ L I P L F QN+K ++ + T + + L+GP
Sbjct: 4 ISCSKEYAEDVRNLNIRPEQLDDFFGQKDLIQNLKVFINA----AKTRTEALDHVLLHGP 59
Query: 72 RGFG 75
G G
Sbjct: 60 PGLG 63
>sp|Q96T68|SETB2_HUMAN Histone-lysine N-methyltransferase SETDB2 OS=Homo sapiens GN=SETDB2
PE=1 SV=2
Length = 719
Score = 33.1 bits (74), Expect = 1.5, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 39/91 (42%), Gaps = 8/91 (8%)
Query: 16 CSHEYSKSVKKLTITPHYLSFSSSSTEQNIKFPVSKTNHLSNTTAN----SPLYATLNGP 71
C ++S + K+LT+ Y + S I+ P SKT + S T
Sbjct: 460 CPPKFSNNPKELTVETKYDNISRIQYHSVIRDPESKTAIFQHNGKKMEFVSSESVTPEDN 519
Query: 72 RGFGPPPK----KTKKAKKPKTGNDSDDDED 98
GF PP + KTK A+K + N D+ ED
Sbjct: 520 DGFKPPREHLNSKTKGAQKDSSSNHVDEFED 550
>sp|B3CMH5|RUVB_WOLPP Holliday junction ATP-dependent DNA helicase RuvB OS=Wolbachia
pipientis subsp. Culex pipiens (strain wPip) GN=ruvB
PE=3 SV=1
Length = 329
Score = 32.3 bits (72), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 6/64 (9%)
Query: 14 VDCSHEYSKSVKKLTITPHYLS--FSSSSTEQNIKFPVSKTNHLSNTTANSPLYATLNGP 71
+ CS EYS+ V+ L I P L QN+K ++ + T A + + L GP
Sbjct: 4 ISCSKEYSEDVRNLNIRPEQLDDFVGQKDLIQNLKVFINA----AQTRAEALDHVLLYGP 59
Query: 72 RGFG 75
G G
Sbjct: 60 PGLG 63
>sp|P17429|AREA_EMENI Nitrogen regulatory protein areA OS=Emericella nidulans (strain
FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139)
GN=areA PE=1 SV=2
Length = 876
Score = 32.0 bits (71), Expect = 3.6, Method: Composition-based stats.
Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 8/90 (8%)
Query: 31 PHYLSFSSSSTEQNIKFPVSKTNHLSNTTANSPLYATLNGPRGFGPPPKKTKK-AKKPKT 89
P+ F+ S +E P++ N +N A +P+ ++LN F PPP + A P+
Sbjct: 354 PYQQQFTFSPSES----PMTSGNPFANLYAQTPIASSLNSTDFFSPPPSGYQSTASTPQP 409
Query: 90 GNDSDDDE--DEEGD-EAEAGVIPEIVTNR 116
D + + D D ++ V+P +T R
Sbjct: 410 AYDGEHSKYFDMPVDARSQRRVVPAYITQR 439
>sp|P32790|SLA1_YEAST Actin cytoskeleton-regulatory complex protein SLA1 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=SLA1 PE=1
SV=1
Length = 1244
Score = 30.4 bits (67), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 71 PRGFGPPPKKTKKAKKPKTGNDSDDDEDEEG 101
P F PPP+ +A+ ++ D DEDEEG
Sbjct: 162 PTNFLPPPQHNDRARMMQSKEDQAPDEDEEG 192
>sp|A6ZKU1|SLA1_YEAS7 Actin cytoskeleton-regulatory complex protein SLA1 OS=Saccharomyces
cerevisiae (strain YJM789) GN=SLA1 PE=3 SV=1
Length = 1244
Score = 30.4 bits (67), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 71 PRGFGPPPKKTKKAKKPKTGNDSDDDEDEEG 101
P F PPP+ +A+ ++ D DEDEEG
Sbjct: 162 PTNFLPPPQHNDRARMMQSKEDQAPDEDEEG 192
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.135 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 88,228,084
Number of Sequences: 539616
Number of extensions: 3956592
Number of successful extensions: 23073
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 81
Number of HSP's that attempted gapping in prelim test: 22508
Number of HSP's gapped (non-prelim): 526
length of query: 213
length of database: 191,569,459
effective HSP length: 113
effective length of query: 100
effective length of database: 130,592,851
effective search space: 13059285100
effective search space used: 13059285100
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (27.3 bits)