Query 028112
Match_columns 213
No_of_seqs 91 out of 93
Neff 2.9
Searched_HMMs 46136
Date Fri Mar 29 06:25:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028112.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028112hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF11947 DUF3464: Protein of u 100.0 1.9E-56 4.2E-61 368.7 10.3 140 69-208 4-152 (153)
2 PLN02601 beta-carotene hydroxy 84.2 2.4 5.2E-05 39.6 5.7 56 111-169 80-146 (303)
3 PF07332 DUF1469: Protein of u 74.3 8 0.00017 29.5 4.9 87 114-206 31-120 (121)
4 PF06781 UPF0233: Uncharacteri 70.9 16 0.00035 28.4 5.9 39 128-167 40-80 (87)
5 PF06570 DUF1129: Protein of u 68.7 6.1 0.00013 33.4 3.5 48 117-165 146-193 (206)
6 KOG1600 Fatty acid desaturase 67.6 11 0.00025 35.5 5.3 46 120-174 42-87 (321)
7 PF08592 DUF1772: Domain of un 64.2 17 0.00037 27.6 4.8 83 114-199 26-119 (139)
8 PRK00159 putative septation in 60.7 30 0.00064 27.2 5.6 39 129-168 41-81 (87)
9 COG4709 Predicted membrane pro 57.8 12 0.00026 33.2 3.4 31 108-138 77-108 (195)
10 PRK10747 putative protoheme IX 55.8 20 0.00042 32.7 4.5 52 140-193 27-78 (398)
11 TIGR00893 2A0114 d-galactonate 55.2 11 0.00023 30.8 2.5 43 160-202 321-363 (399)
12 PF14940 TMEM219: Transmembran 51.8 13 0.00028 33.2 2.7 24 151-174 9-32 (223)
13 PRK02251 putative septation in 51.6 50 0.0011 25.9 5.6 14 129-142 42-55 (87)
14 TIGR00540 hemY_coli hemY prote 49.9 21 0.00046 32.4 3.8 52 140-193 27-78 (409)
15 PF04246 RseC_MucC: Positive r 49.8 16 0.00035 28.7 2.7 51 116-172 66-116 (135)
16 PF04120 Iron_permease: Low af 48.7 16 0.00036 30.2 2.6 44 115-158 2-45 (132)
17 PF08041 PetM: PetM family of 47.6 17 0.00036 23.9 2.0 20 156-175 4-23 (31)
18 PF11127 DUF2892: Protein of u 46.4 23 0.00049 24.7 2.7 20 152-171 33-52 (66)
19 PF13630 SdpI: SdpI/YhfL prote 45.2 50 0.0011 23.0 4.3 23 113-135 25-47 (76)
20 PF06728 PIG-U: GPI transamida 44.2 5.6 0.00012 36.8 -0.8 48 154-202 215-264 (382)
21 PF07214 DUF1418: Protein of u 44.0 14 0.00031 29.5 1.5 39 129-168 15-56 (96)
22 TIGR00879 SP MFS transporter, 43.2 13 0.00028 31.4 1.3 32 170-201 403-434 (481)
23 PF03806 ABG_transport: AbgT p 41.7 74 0.0016 31.7 6.3 25 157-181 299-323 (502)
24 PF06181 DUF989: Protein of un 41.6 22 0.00048 33.4 2.6 39 130-168 91-135 (300)
25 PRK11876 petM cytochrome b6-f 41.5 24 0.00051 23.3 2.0 21 156-176 6-26 (32)
26 PF15451 DUF4632: Domain of un 40.6 29 0.00063 26.3 2.7 30 99-128 16-45 (71)
27 PRK03893 putative sialic acid 39.5 38 0.00082 30.1 3.6 39 163-201 379-417 (496)
28 PF08285 DPM3: Dolichol-phosph 39.3 19 0.00042 27.9 1.6 43 156-206 44-86 (91)
29 PF11026 DUF2721: Protein of u 38.2 26 0.00057 28.0 2.3 23 148-170 93-115 (130)
30 PRK11492 hyfE hydrogenase 4 me 37.9 27 0.00058 30.6 2.4 42 129-170 99-142 (216)
31 TIGR00792 gph sugar (Glycoside 36.8 42 0.00092 29.1 3.5 76 121-201 72-151 (437)
32 COG0713 NuoK NADH:ubiquinone o 36.5 29 0.00062 28.0 2.2 21 150-170 2-22 (100)
33 PF03176 MMPL: MMPL family; I 36.2 19 0.00042 31.4 1.3 9 136-144 158-166 (333)
34 COG1814 Uncharacterized membra 36.1 24 0.00053 30.6 1.9 67 105-176 129-196 (229)
35 PRK09874 drug efflux system pr 35.2 73 0.0016 27.2 4.6 78 113-201 77-157 (408)
36 PRK12307 putative sialic acid 35.1 63 0.0014 28.0 4.3 79 112-201 75-157 (426)
37 PRK09669 putative symporter Ya 34.9 27 0.0006 31.1 2.1 37 165-201 123-161 (444)
38 TIGR00891 2A0112 putative sial 34.6 1.1E+02 0.0024 25.7 5.5 79 112-201 69-151 (405)
39 TIGR02230 ATPase_gene1 F0F1-AT 34.6 46 0.001 26.5 3.1 26 117-145 44-69 (100)
40 PF13038 DUF3899: Domain of un 34.5 24 0.00052 26.1 1.4 8 129-136 80-87 (92)
41 PF07589 VPEP: PEP-CTERM motif 34.2 32 0.0007 20.9 1.7 14 159-172 7-20 (25)
42 PF00335 Tetraspannin: Tetrasp 33.5 14 0.0003 28.4 0.0 13 158-170 52-64 (221)
43 KOG3882 Tetraspanin family int 33.1 60 0.0013 27.2 3.7 22 149-170 50-71 (237)
44 TIGR00898 2A0119 cation transp 32.3 90 0.0019 28.0 4.9 80 112-201 149-231 (505)
45 PF08566 Pam17: Mitochondrial 32.1 53 0.0011 28.6 3.3 27 117-143 36-62 (173)
46 PRK08386 putative monovalent c 31.3 41 0.00089 28.0 2.4 34 154-189 71-104 (151)
47 KOG4737 ATPase membrane sector 31.2 47 0.001 31.5 3.0 34 148-183 277-311 (326)
48 PF15383 TMEM237: Transmembran 30.9 88 0.0019 28.3 4.6 38 113-150 89-127 (253)
49 PF02687 FtsX: FtsX-like perme 30.2 66 0.0014 22.8 3.0 62 108-169 38-108 (121)
50 PF12666 PrgI: PrgI family pro 29.9 30 0.00065 25.5 1.2 64 119-200 19-82 (93)
51 COG4967 PilV Tfp pilus assembl 29.9 38 0.00082 29.0 2.0 43 157-209 18-67 (162)
52 TIGR00145 FTR1 family protein. 29.8 32 0.0007 31.3 1.7 48 129-176 157-213 (283)
53 PF01788 PsbJ: PsbJ; InterPro 29.6 48 0.001 22.9 2.1 22 149-171 7-28 (40)
54 COG5249 RER1 Golgi protein inv 29.0 1.7E+02 0.0038 25.6 5.9 20 147-166 133-152 (180)
55 PLN00028 nitrate transmembrane 29.0 73 0.0016 29.2 3.8 75 112-197 93-170 (476)
56 PRK05122 major facilitator sup 28.9 65 0.0014 27.8 3.3 86 112-200 73-162 (399)
57 PF15473 PCNP: PEST, proteolyt 27.8 58 0.0013 28.0 2.7 49 62-117 67-115 (150)
58 PF12606 RELT: Tumour necrosis 27.7 36 0.00078 24.2 1.3 22 155-176 3-24 (50)
59 COG3090 DctM TRAP-type C4-dica 27.6 84 0.0018 26.3 3.7 78 114-200 8-86 (177)
60 PF04478 Mid2: Mid2 like cell 27.4 42 0.00091 28.8 1.9 25 122-146 55-79 (154)
61 PRK10591 hypothetical protein; 26.8 40 0.00087 26.8 1.5 39 129-168 15-56 (92)
62 PF14812 PBP1_TM: Transmembran 26.8 19 0.0004 28.0 -0.3 17 104-120 48-64 (81)
63 PF14898 DUF4491: Domain of un 26.5 65 0.0014 25.8 2.6 37 123-160 6-42 (94)
64 PF03613 EIID-AGA: PTS system 26.0 35 0.00075 30.9 1.2 42 128-170 222-263 (264)
65 PF11947 DUF3464: Protein of u 25.9 1.4E+02 0.0031 25.4 4.8 29 107-135 55-83 (153)
66 PLN02220 delta-9 acyl-lipid de 25.7 92 0.002 28.7 3.9 23 152-174 54-76 (299)
67 TIGR00881 2A0104 phosphoglycer 24.9 39 0.00084 27.7 1.2 80 112-202 52-135 (379)
68 PRK08633 2-acyl-glycerophospho 24.9 84 0.0018 31.4 3.7 34 170-203 123-156 (1146)
69 PF07235 DUF1427: Protein of u 24.9 36 0.00079 27.0 1.0 26 129-156 7-32 (90)
70 TIGR00893 2A0114 d-galactonate 24.4 47 0.001 27.1 1.6 80 112-202 51-134 (399)
71 PF09972 DUF2207: Predicted me 24.0 77 0.0017 28.6 3.0 16 121-136 400-415 (511)
72 PF04156 IncA: IncA protein; 23.9 67 0.0015 26.2 2.4 26 114-139 3-29 (191)
73 COG3716 ManZ Phosphotransferas 23.8 48 0.001 30.8 1.7 42 128-175 228-269 (269)
74 PF00689 Cation_ATPase_C: Cati 23.7 89 0.0019 24.7 3.0 18 184-201 113-130 (182)
75 PRK12382 putative transporter; 23.4 1.7E+02 0.0036 25.3 4.8 86 112-200 73-162 (392)
76 PF06496 DUF1097: Protein of u 23.3 28 0.00061 28.1 0.1 22 145-166 15-36 (144)
77 PF07690 MFS_1: Major Facilita 23.3 2.2E+02 0.0047 23.3 5.2 49 155-203 87-138 (352)
78 PRK10473 multidrug efflux syst 23.3 98 0.0021 26.7 3.4 77 112-199 60-140 (392)
79 COG0577 SalY ABC-type antimicr 23.1 1E+02 0.0022 25.5 3.3 67 104-170 323-400 (419)
80 PF03169 OPT: OPT oligopeptide 23.1 1.4E+02 0.003 29.2 4.8 30 148-177 381-411 (624)
81 PRK03633 putative MFS family t 22.9 1.4E+02 0.0031 25.8 4.3 80 113-203 64-147 (381)
82 PF14362 DUF4407: Domain of un 22.8 1.7E+02 0.0038 25.7 4.9 47 148-200 41-87 (301)
83 PF03616 Glt_symporter: Sodium 22.6 1.3E+02 0.0027 28.2 4.2 32 123-158 224-255 (368)
84 PRK10714 undecaprenyl phosphat 22.5 98 0.0021 27.7 3.3 9 150-158 265-273 (325)
85 COG2991 Uncharacterized protei 22.5 63 0.0014 25.1 1.8 34 155-190 3-36 (77)
86 TIGR00886 2A0108 nitrite extru 22.3 1.8E+02 0.004 24.3 4.7 79 112-201 59-141 (366)
87 PF08941 USP8_interact: USP8 i 22.1 58 0.0013 28.7 1.8 22 109-130 84-105 (179)
88 PF10823 DUF2568: Protein of u 21.6 1.4E+02 0.0031 23.1 3.7 51 117-170 25-75 (93)
89 TIGR00901 2A0125 AmpG-related 21.5 1.6E+02 0.0035 24.9 4.3 30 167-196 326-355 (356)
90 TIGR00879 SP MFS transporter, 21.4 2.1E+02 0.0046 24.2 4.9 85 112-204 93-181 (481)
91 TIGR03062 pip_yhgE_Cterm YhgE/ 21.2 2.2E+02 0.0048 23.0 4.9 28 114-141 60-87 (208)
92 TIGR00880 2_A_01_02 Multidrug 21.1 1.8E+02 0.004 19.9 3.8 30 171-200 72-101 (141)
93 TIGR00895 2A0115 benzoate tran 20.8 2.3E+02 0.0049 23.6 4.9 80 112-202 74-157 (398)
94 PRK05415 hypothetical protein; 20.6 1.3E+02 0.0027 28.6 3.8 24 148-171 93-116 (341)
95 TIGR00891 2A0112 putative sial 20.4 1.5E+02 0.0032 24.9 3.8 36 166-201 344-379 (405)
96 cd06174 MFS The Major Facilita 20.4 2E+02 0.0043 23.2 4.4 79 112-201 56-138 (352)
97 COG2733 Predicted membrane pro 20.2 88 0.0019 30.7 2.7 40 115-160 4-43 (415)
98 PRK03893 putative sialic acid 20.2 93 0.002 27.7 2.7 79 112-201 77-159 (496)
No 1
>PF11947 DUF3464: Protein of unknown function (DUF3464); InterPro: IPR021855 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 137 to 196 amino acids in length.
Probab=100.00 E-value=1.9e-56 Score=368.68 Aligned_cols=140 Identities=43% Similarity=0.852 Sum_probs=122.4
Q ss_pred CCCCCCCCCCccCcCCCCCCCCCCC---------CCCccccccccccCCCcHHHHHHHHhhHHHHhhhhHHhhhhhhhee
Q 028112 69 NGPRGFGPPPKKTKKAKKPKTGNDS---------DDDEDEEGDEAEAGVIPEIVTNRMISRIGFTVGIPLLVGLLFFPFF 139 (213)
Q Consensus 69 ~~~kgF~p~~kk~kk~k~~~~~~~~---------d~dd~~e~~~~~~~aIPevVs~RMlrRia~f~GiP~~lG~~~f~~~ 139 (213)
.+++||+|.++++|+.|+.++.... .++.+++..+.++.+||++|+|||+|||++|||||+++||++|++|
T Consensus 4 r~~~pfeP~~~~~k~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IP~~Vs~RM~rRm~~~~GiP~~lG~~~f~~~ 83 (153)
T PF11947_consen 4 RKRLPFEPSKKRKKNKKKQRKPPQQKAAAKSSASKKKKPQEKRDEDDSAIPEVVSNRMLRRMAVFVGIPTALGVAVFVVF 83 (153)
T ss_pred CCCCCCCCccchhhhhccccccccchhhhcccccccccccccccccccccCHHHHHHHHHHHHHHhchHHHHHHHHHHHH
Confidence 4789999999887655544333221 1122234456778899999999999999999999999999999999
Q ss_pred eeeeeccccccCchhHHHHHHHHHHHhhhhhhhccccccCCCCCCCccccHHHhhhhHHHHHHHHhhCC
Q 028112 140 YYLKVVLKIDVPSWLPVIVSFIFFGAALLGVNYGIVSSSWDPLREGSLLGWNEAQRNWPVFWQSLWSGG 208 (213)
Q Consensus 140 Y~L~~~~~~dvP~wv~~lvS~~~FGlglLGISYGiLSASWDp~reGSlLG~eE~k~N~~~~w~s~~~~~ 208 (213)
|||++++++|||+|+++++|++|||+||||||||||||||||+|+||||||+||++||+|||+++++.+
T Consensus 84 y~l~~~~~~dvP~~~~~~~S~~~Fg~gllGisYGilSaSWD~~r~GSllG~~e~~~N~~r~~~a~~~~~ 152 (153)
T PF11947_consen 84 YYLKSRQIVDVPPWAVLLVSLVFFGLGLLGISYGILSASWDPEREGSLLGWEEFKRNWGRMWEAWRSSR 152 (153)
T ss_pred HHHHhccccccCchHHHHHHHHHHHHHHHhhhhhhcccccCCCCCCCcccHHHHHHhHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999999999999999999999999999999999864
No 2
>PLN02601 beta-carotene hydroxylase
Probab=84.18 E-value=2.4 Score=39.59 Aligned_cols=56 Identities=13% Similarity=0.125 Sum_probs=32.4
Q ss_pred HHHHHHHHhh-----------HHHHhhhhHHhhhhhhheeeeeeeccccccCchhHHHHHHHHHHHhhhh
Q 028112 111 EIVTNRMISR-----------IGFTVGIPLLVGLLFFPFFYYLKVVLKIDVPSWLPVIVSFIFFGAALLG 169 (213)
Q Consensus 111 evVs~RMlrR-----------ia~f~GiP~~lG~~~f~~~Y~L~~~~~~dvP~wv~~lvS~~~FGlglLG 169 (213)
.-|+.|+.|| ++-++||-....++++.=|+|-... -|+|-- -++..+++|..+++|
T Consensus 80 ~~~~~~~~~k~~er~ty~~aa~~ss~gi~s~a~~a~y~rf~~~~~~--g~~p~~-em~~~~al~lgtfvg 146 (303)
T PLN02601 80 SRLLKKAEKKKSERFTYLIAAVMSSFGITSMAIMAVYYRFSWQMKG--GEVSML-EMFGTFALSVGAAVG 146 (303)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHhhcHHHHHHHHHHHHHhhccCC--CCcCHH-HHHHHHHHHHHHHHH
Confidence 3466777665 4556677666666776666666654 466643 344444444444555
No 3
>PF07332 DUF1469: Protein of unknown function (DUF1469); InterPro: IPR009937 This entry represents proteins found in hypothetical bacterial proteins where is is annotated as ycf49 or ycf49-like. The function is not known.
Probab=74.26 E-value=8 Score=29.48 Aligned_cols=87 Identities=16% Similarity=0.187 Sum_probs=41.5
Q ss_pred HHHHHhhHHHHhhhhHHhhhhhhheeeeeeecc--ccccCchhHHHH-HHHHHHHhhhhhhhccccccCCCCCCCccccH
Q 028112 114 TNRMISRIGFTVGIPLLVGLLFFPFFYYLKVVL--KIDVPSWLPVIV-SFIFFGAALLGVNYGIVSSSWDPLREGSLLGW 190 (213)
Q Consensus 114 s~RMlrRia~f~GiP~~lG~~~f~~~Y~L~~~~--~~dvP~wv~~lv-S~~~FGlglLGISYGiLSASWDp~reGSlLG~ 190 (213)
..|+.+..+.++..-.++.++++.++..+.... ...+|+|..+++ .+++++++++.+ .+.-..+. +.-..+
T Consensus 31 ~~~~~~~~~~~~~a~vl~~~~l~~l~~al~~~l~~~~~~~~~~a~liv~~~~l~la~i~~--~~~~~~l~----~~~~~~ 104 (121)
T PF07332_consen 31 ARRLGRGLALLVLAAVLALLALLFLLVALVFALWEALGLPPWLAFLIVAGLYLLLALILL--LIGRRRLR----RAPPPF 104 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHH--HHHHHHHh----cCCCCH
Confidence 456666655554443333333322222222222 223467755544 444444443333 22222232 134567
Q ss_pred HHhhhhHHHHHHHHhh
Q 028112 191 NEAQRNWPVFWQSLWS 206 (213)
Q Consensus 191 eE~k~N~~~~w~s~~~ 206 (213)
++-+..+.+-++.+++
T Consensus 105 ~~t~~~l~~d~~~lk~ 120 (121)
T PF07332_consen 105 EETIAELKEDIAALKE 120 (121)
T ss_pred HHHHHHHHHHHHHhhc
Confidence 8888888887777765
No 4
>PF06781 UPF0233: Uncharacterised protein family (UPF0233); InterPro: IPR009619 This is a group of proteins of unknown function.
Probab=70.91 E-value=16 Score=28.44 Aligned_cols=39 Identities=21% Similarity=0.365 Sum_probs=21.1
Q ss_pred hHHhhhhhhheeeeeeec--cccccCchhHHHHHHHHHHHhh
Q 028112 128 PLLVGLLFFPFFYYLKVV--LKIDVPSWLPVIVSFIFFGAAL 167 (213)
Q Consensus 128 P~~lG~~~f~~~Y~L~~~--~~~dvP~wv~~lvS~~~FGlgl 167 (213)
-+++|++-.++||+-... -.-++-.|=. ++-+++..+|+
T Consensus 40 lmllGL~WiVvyYi~~~~i~pi~~lG~WN~-~IGfg~~~~Gf 80 (87)
T PF06781_consen 40 LMLLGLLWIVVYYISGGQIPPIPDLGNWNL-AIGFGLMIVGF 80 (87)
T ss_pred HHHHHHHHHhhhhcccCCCCCcccccchHH-HHHHHHHHHHH
Confidence 467788877777766554 2334555633 33334443443
No 5
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=68.70 E-value=6.1 Score=33.36 Aligned_cols=48 Identities=23% Similarity=0.382 Sum_probs=28.0
Q ss_pred HHhhHHHHhhhhHHhhhhhhheeeeeeeccccccCchhHHHHHHHHHHH
Q 028112 117 MISRIGFTVGIPLLVGLLFFPFFYYLKVVLKIDVPSWLPVIVSFIFFGA 165 (213)
Q Consensus 117 MlrRia~f~GiP~~lG~~~f~~~Y~L~~~~~~dvP~wv~~lvS~~~FGl 165 (213)
..+|+++.+++.++. +++|.+..+|-..-...+|+|+.++..+++|++
T Consensus 146 ~~k~~~~~~~~~~~w-~~~~~~~~~lp~~inp~l~~~~~iiig~i~~~~ 193 (206)
T PF06570_consen 146 WWKYILISVLAMVLW-IVIFVLTSFLPPVINPVLPPWVYIIIGVIAFAL 193 (206)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHccccCCcCCCHHHHHHHHHHHHHH
Confidence 345666666555444 444444444555555677788777766666654
No 6
>KOG1600 consensus Fatty acid desaturase [Lipid transport and metabolism]
Probab=67.57 E-value=11 Score=35.50 Aligned_cols=46 Identities=11% Similarity=0.340 Sum_probs=32.8
Q ss_pred hHHHHhhhhHHhhhhhhheeeeeeeccccccCchhHHHHHHHHHHHhhhhhhhcc
Q 028112 120 RIGFTVGIPLLVGLLFFPFFYYLKVVLKIDVPSWLPVIVSFIFFGAALLGVNYGI 174 (213)
Q Consensus 120 Ria~f~GiP~~lG~~~f~~~Y~L~~~~~~dvP~wv~~lvS~~~FGlglLGISYGi 174 (213)
-|+.+++++++..++++.... . -.|.+++.++++..+|-|||+-|.
T Consensus 42 nv~~~~~l~~~a~ygl~~~~~--------~-~~w~t~~~~~~l~~v~glgITag~ 87 (321)
T KOG1600|consen 42 NVVLFSALHIVALYGLLAPPF--------S-AKWETLLFAFFLYAVGGLGITAGY 87 (321)
T ss_pred hhHHHHHHHHHHHHHHHHhhc--------c-chHHHHHHHHHHHHHhhceeeeeh
Confidence 466777777766555443211 1 138899999999999999999885
No 7
>PF08592 DUF1772: Domain of unknown function (DUF1772); InterPro: IPR013901 This entry represents proteins of unknown function.
Probab=64.17 E-value=17 Score=27.59 Aligned_cols=83 Identities=14% Similarity=0.237 Sum_probs=34.8
Q ss_pred HHHHHhhHHHHhhhhHHhhhhhhheeeeeeeccccccCchhHHHHHHHHHHHhhhhh--------hhccccccCCC--CC
Q 028112 114 TNRMISRIGFTVGIPLLVGLLFFPFFYYLKVVLKIDVPSWLPVIVSFIFFGAALLGV--------NYGIVSSSWDP--LR 183 (213)
Q Consensus 114 s~RMlrRia~f~GiP~~lG~~~f~~~Y~L~~~~~~dvP~wv~~lvS~~~FGlglLGI--------SYGiLSASWDp--~r 183 (213)
.++|-+|+..+...-.+++++.+....|+.....-+--.+..++++++++ ++.+.+ ...+ +.||. +.
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~~~~~~~a~~~~-~~~~~~T~~~~~P~N~~l--~~~~~~~~~ 102 (139)
T PF08592_consen 26 WQRFYRRGPRFMPPLSLLSALSYLYLAYVALRRRSRPAARLLWLAAAALL-LSIIPFTFLVNVPINNRL--AAWDIESSP 102 (139)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHH-HHHHHHHHHHhhHHHHHH--HHccccccc
Confidence 45666666444444334444442222221111111222344444444333 334433 4444 77882 22
Q ss_pred CCccccH-HHhhhhHHH
Q 028112 184 EGSLLGW-NEAQRNWPV 199 (213)
Q Consensus 184 eGSlLG~-eE~k~N~~~ 199 (213)
+..--.| +++.+.|++
T Consensus 103 ~~~~~~~~~~l~~~W~~ 119 (139)
T PF08592_consen 103 EEAPADWVRALLDRWGR 119 (139)
T ss_pred cccchHHHHHHHHHHHH
Confidence 2223334 566665654
No 8
>PRK00159 putative septation inhibitor protein; Reviewed
Probab=60.71 E-value=30 Score=27.19 Aligned_cols=39 Identities=23% Similarity=0.486 Sum_probs=21.7
Q ss_pred HHhhhhhhheeeeeeecccc--ccCchhHHHHHHHHHHHhhh
Q 028112 129 LLVGLLFFPFFYYLKVVLKI--DVPSWLPVIVSFIFFGAALL 168 (213)
Q Consensus 129 ~~lG~~~f~~~Y~L~~~~~~--dvP~wv~~lvS~~~FGlglL 168 (213)
+.+|++-.+++|+....-.+ ++-.|= +++-++++-+|++
T Consensus 41 m~~GllWlvvyYl~~~~~P~m~~lG~WN-~~IGFg~~i~G~l 81 (87)
T PRK00159 41 MLIGLAWLVVNYLAGPAIPWMADLGPWN-YAIGFALMITGLL 81 (87)
T ss_pred HHHHHHHHHHHhhccCCCCCCcccCchh-HHHHHHHHHHHHH
Confidence 56788888888875432221 455663 3444444444443
No 9
>COG4709 Predicted membrane protein [Function unknown]
Probab=57.81 E-value=12 Score=33.23 Aligned_cols=31 Identities=23% Similarity=0.577 Sum_probs=20.6
Q ss_pred CCcH-HHHHHHHhhHHHHhhhhHHhhhhhhhe
Q 028112 108 VIPE-IVTNRMISRIGFTVGIPLLVGLLFFPF 138 (213)
Q Consensus 108 aIPe-vVs~RMlrRia~f~GiP~~lG~~~f~~ 138 (213)
-+++ +++-=-+.=..+..|+|+++|+.+|++
T Consensus 77 n~~~aii~~~~L~~~~v~i~Lpl~~~vi~~vi 108 (195)
T COG4709 77 NVRRAIIALIGLGLLAVIIGLPLLIGVILFVI 108 (195)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555 333334555678889999999886653
No 10
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=55.79 E-value=20 Score=32.67 Aligned_cols=52 Identities=10% Similarity=0.142 Sum_probs=27.1
Q ss_pred eeeeeccccccCchhHHHHHHHHHHHhhhhhhhccccccCCCCCCCccccHHHh
Q 028112 140 YYLKVVLKIDVPSWLPVIVSFIFFGAALLGVNYGIVSSSWDPLREGSLLGWNEA 193 (213)
Q Consensus 140 Y~L~~~~~~dvP~wv~~lvS~~~FGlglLGISYGiLSASWDp~reGSlLG~eE~ 193 (213)
|++.+.+.+.|=+.+++++.++.+...++-+.+-++..-|.- ++.+-+|-.-
T Consensus 27 yv~i~~~~~~ie~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~--p~~~~~~~~~ 78 (398)
T PRK10747 27 YVLIQTDNYNIETSVTGLAIILILAMVVLFAIEWLLRRIFRT--GARTRGWFVG 78 (398)
T ss_pred eEEEEECCEEEEehHHHHHHHHHHHHHHHHHHHHHHHHHHhc--chhhhHHHHH
Confidence 777776665555555555444443334443445555555553 4555555433
No 11
>TIGR00893 2A0114 d-galactonate transporter.
Probab=55.23 E-value=11 Score=30.84 Aligned_cols=43 Identities=16% Similarity=0.122 Sum_probs=29.2
Q ss_pred HHHHHHhhhhhhhccccccCCCCCCCccccHHHhhhhHHHHHH
Q 028112 160 FIFFGAALLGVNYGIVSSSWDPLREGSLLGWNEAQRNWPVFWQ 202 (213)
Q Consensus 160 ~~~FGlglLGISYGiLSASWDp~reGSlLG~eE~k~N~~~~w~ 202 (213)
+.+++.|...+.+.+++..-+++..|...|+-..-.|++.+--
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~ 363 (399)
T TIGR00893 321 LGFFGLGAGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVG 363 (399)
T ss_pred HHHhchhhhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhh
Confidence 3444444455666666666677778999999888877776543
No 12
>PF14940 TMEM219: Transmembrane 219
Probab=51.83 E-value=13 Score=33.18 Aligned_cols=24 Identities=17% Similarity=0.450 Sum_probs=16.6
Q ss_pred CchhHHHHHHHHHHHhhhhhhhcc
Q 028112 151 PSWLPVIVSFIFFGAALLGVNYGI 174 (213)
Q Consensus 151 P~wv~~lvS~~~FGlglLGISYGi 174 (213)
|+-|+|..+++.||+++||++|=|
T Consensus 9 PPlVvF~l~Ll~~aI~~l~Lg~yi 32 (223)
T PF14940_consen 9 PPLVVFTLCLLLLAISFLCLGYYI 32 (223)
T ss_pred CCchHHHHHHHHHHHHHheeeeEe
Confidence 666777777777777777766655
No 13
>PRK02251 putative septation inhibitor protein; Reviewed
Probab=51.61 E-value=50 Score=25.91 Aligned_cols=14 Identities=21% Similarity=0.876 Sum_probs=10.6
Q ss_pred HHhhhhhhheeeee
Q 028112 129 LLVGLLFFPFFYYL 142 (213)
Q Consensus 129 ~~lG~~~f~~~Y~L 142 (213)
+.+|++-.+++|+.
T Consensus 42 m~~Gl~WlvvyYl~ 55 (87)
T PRK02251 42 MIIGLIWLVVYYLS 55 (87)
T ss_pred HHHHHHHHHHHhhh
Confidence 56788888887774
No 14
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=49.93 E-value=21 Score=32.41 Aligned_cols=52 Identities=12% Similarity=0.065 Sum_probs=26.2
Q ss_pred eeeeeccccccCchhHHHHHHHHHHHhhhhhhhccccccCCCCCCCccccHHHh
Q 028112 140 YYLKVVLKIDVPSWLPVIVSFIFFGAALLGVNYGIVSSSWDPLREGSLLGWNEA 193 (213)
Q Consensus 140 Y~L~~~~~~dvP~wv~~lvS~~~FGlglLGISYGiLSASWDp~reGSlLG~eE~ 193 (213)
|++.+...+.|=..+++++.++.+...++-+-+.+++.-|.- ++.+-+|-.-
T Consensus 27 yv~i~~~~~~ie~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~--p~~~~~~~~~ 78 (409)
T TIGR00540 27 YVLIETANRIIEMSITGLAIFFIIALAIIFAFEWGLRRFFRL--GAHSRGWFSG 78 (409)
T ss_pred eEEEEECCEEEEeeHHHHHHHHHHHHHHHHHHHHHHHHHHHc--cHHHHHHHHH
Confidence 777776655554444444433333333333345566655553 4555555443
No 15
>PF04246 RseC_MucC: Positive regulator of sigma(E), RseC/MucC; InterPro: IPR007359 This bacterial family of integral membrane proteins represents a positive regulator of the sigma(E) transcription factor, namely RseC/MucC. The sigma(E) transcription factor is up-regulated by cell envelope protein misfolding, and regulates the expression of genes that are collectively termed ECF (devoted to Extra-Cellular Functions) []. In Pseudomonas aeruginosa, derepression of sigma(E) is associated with the alginate-overproducing phenotype characteristic of chronic respiratory tract colonization in cystic fibrosis patients. The mechanism by which RseC/MucC positively regulates the sigma(E) transcription factor is unknown. RseC is also thought to have a role in thiamine biosynthesis in Salmonella typhimurium []. In addition, this family also includes an N-terminal part of RnfF, a Rhodobacter capsulatus protein, of unknown function, that is essential for nitrogen fixation. This protein also contains a domain found in ApbE protein IPR003374 from INTERPRO, which is itself involved in thiamine biosynthesis.
Probab=49.82 E-value=16 Score=28.67 Aligned_cols=51 Identities=12% Similarity=0.069 Sum_probs=34.3
Q ss_pred HHHhhHHHHhhhhHHhhhhhhheeeeeeeccccccCchhHHHHHHHHHHHhhhhhhh
Q 028112 116 RMISRIGFTVGIPLLVGLLFFPFFYYLKVVLKIDVPSWLPVIVSFIFFGAALLGVNY 172 (213)
Q Consensus 116 RMlrRia~f~GiP~~lG~~~f~~~Y~L~~~~~~dvP~wv~~lvS~~~FGlglLGISY 172 (213)
.+++-.++.-++|+++=++...+.+++-.. .+..++.+++.+++|.+.+-+
T Consensus 66 ~~~~aa~l~Y~lPll~li~g~~l~~~~~~~------e~~~~l~~l~~l~~~~~~~~~ 116 (135)
T PF04246_consen 66 SLLKAAFLVYLLPLLALIAGAVLGSYLGGS------ELWAILGGLLGLALGFLILRL 116 (135)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHH
Confidence 456677888899988777666655555433 466667777777777666654
No 16
>PF04120 Iron_permease: Low affinity iron permease ; InterPro: IPR007251 Although originally identified as a low-affinity iron(II) permease [, ], Fet4 has since been shown to import several other transition metal ions, including copper [, ] and zinc []. Copper, cobalt, and cadmium inhibit Fet4 [, ]. Fet4 is an integral protein of the plasma membrane [, ]. FET4 is not essential, not even in fet3 fet4 double mutants []. Over expression of FET4 improves growth under alkaline conditions []. Transcription of FET4 is induced by Aft1 in response to low levels of iron [, , ] or by Zap1 in response to low zinc [, ], but not in response to low copper []. When the high-affinity iron permease component Fet3 is deleted, FET4 is induced by the addition of copper, zinc, cobalt, or manganese []. It is also induced under anaerobic conditions [, , ] and repressed by Rox1 in aerobic conditions [, ]. Rox1 attenuates the activation of FET4 by Aft1 or Zap1 []. ; GO: 0055085 transmembrane transport
Probab=48.69 E-value=16 Score=30.19 Aligned_cols=44 Identities=9% Similarity=0.068 Sum_probs=35.7
Q ss_pred HHHHhhHHHHhhhhHHhhhhhhheeeeeeeccccccCchhHHHH
Q 028112 115 NRMISRIGFTVGIPLLVGLLFFPFFYYLKVVLKIDVPSWLPVIV 158 (213)
Q Consensus 115 ~RMlrRia~f~GiP~~lG~~~f~~~Y~L~~~~~~dvP~wv~~lv 158 (213)
.|...+++-++|-|.+.++++.++.-|+..+..+.-+.+--+++
T Consensus 2 ~r~s~~is~~~gs~~~f~~~~~~Ii~W~i~Gp~~~~sdtWQLvi 45 (132)
T PF04120_consen 2 ERFSNWISDVAGSPWAFVIAVAVIIVWAISGPVFGFSDTWQLVI 45 (132)
T ss_pred hHHHHHHHHHHCCHHHHHHHHHHHHHHHHHhccccCcchHHHHH
Confidence 68889999999999999999999999998887777664444443
No 17
>PF08041 PetM: PetM family of cytochrome b6f complex subunit 7; InterPro: IPR012595 This family consists of the PetM family of cytochrome b6f complex subunit IV. The cytochrome b6f complex consists of 7 subunits and contains 2 beta haem's and 1 chlorophyll alpha per cytochrome f. It is highly active in transferring electrons from decylplastoquinol to oxidised plastocyanin [].; GO: 0009512 cytochrome b6f complex; PDB: 2ZT9_F 1Q90_M 2E76_F 2E75_F 2E74_F 2D2C_S 1VF5_S.
Probab=47.55 E-value=17 Score=23.86 Aligned_cols=20 Identities=35% Similarity=0.703 Sum_probs=16.6
Q ss_pred HHHHHHHHHHhhhhhhhccc
Q 028112 156 VIVSFIFFGAALLGVNYGIV 175 (213)
Q Consensus 156 ~lvS~~~FGlglLGISYGiL 175 (213)
+-++.+||++-++|++.|++
T Consensus 4 f~~a~i~~~lvlvGla~Gf~ 23 (31)
T PF08041_consen 4 FNIAVICFGLVLVGLALGFV 23 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45678899999999998875
No 18
>PF11127 DUF2892: Protein of unknown function (DUF2892); InterPro: IPR021309 This family is conserved in bacteria. The function is not known.
Probab=46.45 E-value=23 Score=24.74 Aligned_cols=20 Identities=20% Similarity=0.438 Sum_probs=16.0
Q ss_pred chhHHHHHHHHHHHhhhhhh
Q 028112 152 SWLPVIVSFIFFGAALLGVN 171 (213)
Q Consensus 152 ~wv~~lvS~~~FGlglLGIS 171 (213)
.|+..++.+.++..|+.|..
T Consensus 33 ~~~~~~~g~~ll~~g~~g~C 52 (66)
T PF11127_consen 33 GWLLGFVGAMLLVTGITGFC 52 (66)
T ss_pred HHHHHHHHHHHHHHHHHCcC
Confidence 68888888888888888853
No 19
>PF13630 SdpI: SdpI/YhfL protein family
Probab=45.17 E-value=50 Score=22.99 Aligned_cols=23 Identities=26% Similarity=0.283 Sum_probs=17.2
Q ss_pred HHHHHHhhHHHHhhhhHHhhhhh
Q 028112 113 VTNRMISRIGFTVGIPLLVGLLF 135 (213)
Q Consensus 113 Vs~RMlrRia~f~GiP~~lG~~~ 135 (213)
.+||...++.+..|+.++++-.+
T Consensus 25 ~a~r~~g~~~~~~Gi~~~~~~~~ 47 (76)
T PF13630_consen 25 KAHRFAGKIFIIGGIVLLIIGII 47 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 57899999999998875554433
No 20
>PF06728 PIG-U: GPI transamidase subunit PIG-U; InterPro: IPR009600 Many eukaryotic proteins are anchored to the cell surface via glycosylphosphatidylinositol (GPI), which is posttranslationally attached to the C terminus by GPI transamidase. The mammalian GPI transamidase is a complex of at least four subunits, GPI8, GAA1, PIG-S, and PIG-T. PIG-U is thought to represent a fifth subunit in this complex and may be involved in the recognition of either the GPI attachment signal or the lipid portion of GPI [].; GO: 0006506 GPI anchor biosynthetic process, 0005789 endoplasmic reticulum membrane, 0016021 integral to membrane
Probab=44.24 E-value=5.6 Score=36.84 Aligned_cols=48 Identities=31% Similarity=0.505 Sum_probs=34.5
Q ss_pred hHHHHHHHHHHHhhhhhhhccccccCCCC--CCCccccHHHhhhhHHHHHH
Q 028112 154 LPVIVSFIFFGAALLGVNYGIVSSSWDPL--REGSLLGWNEAQRNWPVFWQ 202 (213)
Q Consensus 154 v~~lvS~~~FGlglLGISYGiLSASWDp~--reGSlLG~eE~k~N~~~~w~ 202 (213)
+..++.+.+.-++++.+||- +..|||-- .=|..+-.+..+.|+|-.|=
T Consensus 215 ~~~~~~f~~~~~~L~~~S~~-~~~sw~fl~~ty~~~l~~~dltPNlGl~WY 264 (382)
T PF06728_consen 215 LQILLIFIASLAALLLLSYL-ITGSWNFLDSTYGFILTVPDLTPNLGLWWY 264 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HcCChHHHHHHHHHhhcccCCCCCcchHHH
Confidence 33344444455667779999 88899943 34788888889999998883
No 21
>PF07214 DUF1418: Protein of unknown function (DUF1418); InterPro: IPR010815 This family consists of several hypothetical Enterobacterial proteins of around 100 residues in length. Members of this family are often described as YbjC. In Escherichia coli the ybjC gene is located downstream of nfsA (which encodes the major oxygen-insensitive nitroreductase). It is thought that nfsA and ybjC form an operon an its promoter is a class I SoxS-dependent promoter []. The function of this family is unknown.
Probab=44.03 E-value=14 Score=29.51 Aligned_cols=39 Identities=21% Similarity=0.512 Sum_probs=26.7
Q ss_pred HHhhhhhhheeeeeeeccccccCchh---HHHHHHHHHHHhhh
Q 028112 129 LLVGLLFFPFFYYLKVVLKIDVPSWL---PVIVSFIFFGAALL 168 (213)
Q Consensus 129 ~~lG~~~f~~~Y~L~~~~~~dvP~wv---~~lvS~~~FGlglL 168 (213)
=++||.++++.|+ ..++.+.+|.+. ...+.++|.|+++.
T Consensus 15 E~lG~~LLv~a~L-sin~~l~LP~~l~~~~aai~MIf~Gi~lM 56 (96)
T PF07214_consen 15 EVLGMILLVLAYL-SINDYLSLPAPLSTPTAAIAMIFVGIGLM 56 (96)
T ss_pred HHHHHHHHHHHHH-HHcccccCcccccCchHHHHHHHHHHHHH
Confidence 3578888888884 466667888664 34566777777653
No 22
>TIGR00879 SP MFS transporter, sugar porter (SP) family. This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)
Probab=43.25 E-value=13 Score=31.39 Aligned_cols=32 Identities=19% Similarity=0.032 Sum_probs=21.5
Q ss_pred hhhccccccCCCCCCCccccHHHhhhhHHHHH
Q 028112 170 VNYGIVSSSWDPLREGSLLGWNEAQRNWPVFW 201 (213)
Q Consensus 170 ISYGiLSASWDp~reGSlLG~eE~k~N~~~~w 201 (213)
+.+-+++....++..|...|+-.+-.|++.+.
T Consensus 403 ~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i 434 (481)
T TIGR00879 403 VPWVIVSEIFPLSLRPKGISIAVAANWLANFI 434 (481)
T ss_pred eehhhhhccCChHHHHHHHHHHHHHHHHHHHH
Confidence 33334455556666788999888888877654
No 23
>PF03806 ABG_transport: AbgT putative transporter family; InterPro: IPR004697 The p-aminobenzoyl-glutamate transporter family includes two putative transporters, the AbgT protein of Escherichia coli and MtrF of Neisseria gonorrhoeae. AbgT expression is apparently cryptic in wild type cells, but when present on a high copy number plasmid, or when expressed at higher levels due to mutation, it allows utilization of p-aminobenzoyl-glutamate as a source of p-aminobenzoate for p-aminobenzoate auxotrophs []. p-Aminobenzoate is a constituent of, and a precursor for, the biosynthesis of folic acid. It is not currently known if AbgT is naturally involved in transporting p-aminobenzoyl-glutamate, or if it only becomes involved when under altered regulation. MtrF is an inner membrane protein which, together with the MtrCDE efflux pump, is required for high-level resistance to hydrophobic antimicrobial agents in N. gonorrhoeae []. Its role in this process is not known, but it has been suggested that it may be a component of the efflux pump which is dispensible for basal activity, but required for high-level activity [].
Probab=41.68 E-value=74 Score=31.69 Aligned_cols=25 Identities=32% Similarity=0.567 Sum_probs=19.5
Q ss_pred HHHHHHHHHhhhhhhhccccccCCC
Q 028112 157 IVSFIFFGAALLGVNYGIVSSSWDP 181 (213)
Q Consensus 157 lvS~~~FGlglLGISYGiLSASWDp 181 (213)
++-.++|...+.|+.||+.|....-
T Consensus 299 IIpiI~l~F~i~GivYG~~sG~iks 323 (502)
T PF03806_consen 299 IIPIIFLFFLIPGIVYGIASGTIKS 323 (502)
T ss_pred HHHHHHHHHHHHHHHHhhhhceecC
Confidence 3445777788999999999987654
No 24
>PF06181 DUF989: Protein of unknown function (DUF989); InterPro: IPR010389 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=41.62 E-value=22 Score=33.37 Aligned_cols=39 Identities=23% Similarity=0.405 Sum_probs=30.0
Q ss_pred Hhhhhhhheeee------eeeccccccCchhHHHHHHHHHHHhhh
Q 028112 130 LVGLLFFPFFYY------LKVVLKIDVPSWLPVIVSFIFFGAALL 168 (213)
Q Consensus 130 ~lG~~~f~~~Y~------L~~~~~~dvP~wv~~lvS~~~FGlglL 168 (213)
+.|+++|.+.|| |......|+.+|+....|+++..+|-+
T Consensus 91 lSGfaLl~~~Yy~~a~~yLiDp~v~~ls~~~Ai~isl~~l~~gWl 135 (300)
T PF06181_consen 91 LSGFALLIVVYYFNAELYLIDPSVMDLSPWQAIAISLGSLVLGWL 135 (300)
T ss_pred HHHHHHHHHHHHhCCceEEECCcccCCCHHHHHHHHHHHHHHHHH
Confidence 456666666665 778888999999999998888776653
No 25
>PRK11876 petM cytochrome b6-f complex subunit PetM; Reviewed
Probab=41.50 E-value=24 Score=23.29 Aligned_cols=21 Identities=14% Similarity=0.235 Sum_probs=17.5
Q ss_pred HHHHHHHHHHhhhhhhhcccc
Q 028112 156 VIVSFIFFGAALLGVNYGIVS 176 (213)
Q Consensus 156 ~lvS~~~FGlglLGISYGiLS 176 (213)
+-++.++|++-++|++-|++.
T Consensus 6 f~~A~i~~~LvlvGlalGf~L 26 (32)
T PRK11876 6 FGIAALFWVLIPVGLAGGALL 26 (32)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 456788999999999999874
No 26
>PF15451 DUF4632: Domain of unknown function (DUF4632)
Probab=40.56 E-value=29 Score=26.32 Aligned_cols=30 Identities=30% Similarity=0.347 Sum_probs=22.9
Q ss_pred ccccccccCCCcHHHHHHHHhhHHHHhhhh
Q 028112 99 EEGDEAEAGVIPEIVTNRMISRIGFTVGIP 128 (213)
Q Consensus 99 ~e~~~~~~~aIPevVs~RMlrRia~f~GiP 128 (213)
+++.+.+.++=|...-.|-+||+---|-.|
T Consensus 16 d~e~ese~gagprs~gwralrrlwdrvl~p 45 (71)
T PF15451_consen 16 DEEEESEKGAGPRSAGWRALRRLWDRVLAP 45 (71)
T ss_pred ccccccccCCCCccccHHHHHHHHHHHHhH
Confidence 455666778899999999999987665554
No 27
>PRK03893 putative sialic acid transporter; Provisional
Probab=39.45 E-value=38 Score=30.15 Aligned_cols=39 Identities=13% Similarity=0.178 Sum_probs=26.5
Q ss_pred HHHhhhhhhhccccccCCCCCCCccccHHHhhhhHHHHH
Q 028112 163 FGAALLGVNYGIVSSSWDPLREGSLLGWNEAQRNWPVFW 201 (213)
Q Consensus 163 FGlglLGISYGiLSASWDp~reGSlLG~eE~k~N~~~~w 201 (213)
++.|..++.+.+++...++++.|+.+|+-..-.+++-+.
T Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~l 417 (496)
T PRK03893 379 LGQGISGLLPKLIGGYFDTEQRAAGLGFTYNVGALGGAL 417 (496)
T ss_pred HhcccchhhHHHHHhhCCHHHhhcccchhhhhhhHHHHH
Confidence 344444455566777778888899999877766665444
No 28
>PF08285 DPM3: Dolichol-phosphate mannosyltransferase subunit 3 (DPM3); InterPro: IPR013174 This family corresponds to subunit 3 of dolichol-phosphate mannosyltransferase, an enzyme which generates mannosyl donors for glycosylphosphatidylinositols, N-glycan and protein O- and C-mannosylation. DPM3 is an integral membrane protein and plays a role in stabilising the dolichol-phosphate mannosyl transferase complex [].
Probab=39.29 E-value=19 Score=27.89 Aligned_cols=43 Identities=26% Similarity=0.258 Sum_probs=24.8
Q ss_pred HHHHHHHHHHhhhhhhhccccccCCCCCCCccccHHHhhhhHHHHHHHHhh
Q 028112 156 VIVSFIFFGAALLGVNYGIVSSSWDPLREGSLLGWNEAQRNWPVFWQSLWS 206 (213)
Q Consensus 156 ~lvS~~~FGlglLGISYGiLSASWDp~reGSlLG~eE~k~N~~~~w~s~~~ 206 (213)
++++++++.++.+| ||++.-.=-|+. -+|.++-+.+-.+.+|.
T Consensus 44 ~Lv~fG~Ysl~~lg--y~v~tFnDcpeA------~~eL~~eI~eAK~dLr~ 86 (91)
T PF08285_consen 44 ALVSFGCYSLFTLG--YGVATFNDCPEA------AKELQKEIKEAKADLRK 86 (91)
T ss_pred HHHHHHHHHHHHHH--HhhhccCCCHHH------HHHHHHHHHHHHHHHHH
Confidence 46788888877777 676655433322 24445555555555544
No 29
>PF11026 DUF2721: Protein of unknown function (DUF2721); InterPro: IPR021279 This family is conserved in bacteria. The function is not known.
Probab=38.22 E-value=26 Score=28.01 Aligned_cols=23 Identities=9% Similarity=0.137 Sum_probs=13.5
Q ss_pred cccCchhHHHHHHHHHHHhhhhh
Q 028112 148 IDVPSWLPVIVSFIFFGAALLGV 170 (213)
Q Consensus 148 ~dvP~wv~~lvS~~~FGlglLGI 170 (213)
.+...++.|+.+++++.+|++-+
T Consensus 93 ~~~~~~~lF~~am~~l~~sl~~f 115 (130)
T PF11026_consen 93 LSWLVAILFVLAMLLLIASLVLF 115 (130)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444556666777776666543
No 30
>PRK11492 hyfE hydrogenase 4 membrane subunit; Provisional
Probab=37.92 E-value=27 Score=30.65 Aligned_cols=42 Identities=19% Similarity=0.211 Sum_probs=22.6
Q ss_pred HHhhhhhhheeeeeeeccc--cccCchhHHHHHHHHHHHhhhhh
Q 028112 129 LLVGLLFFPFFYYLKVVLK--IDVPSWLPVIVSFIFFGAALLGV 170 (213)
Q Consensus 129 ~~lG~~~f~~~Y~L~~~~~--~dvP~wv~~lvS~~~FGlglLGI 170 (213)
+.+|.++..++|++...-. .+...--.+.+++.+|.+|++|+
T Consensus 99 ~ll~~~~~i~s~~~~~~i~~~~~~~~~~~l~~a~~lf~iGl~~~ 142 (216)
T PRK11492 99 ILLAALIVLLCAFVVQPVKLPMALGLKPALAVSLGHFLLGLLCI 142 (216)
T ss_pred HHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHH
Confidence 3455554555555543311 11112235677888888888875
No 31
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter. GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.
Probab=36.80 E-value=42 Score=29.11 Aligned_cols=76 Identities=13% Similarity=0.164 Sum_probs=41.6
Q ss_pred HHHHhhhhHHhhhhhhheeeeeeeccccccCchhHHHHHHHHHH--HhhhhhhhccccccC--CCCCCCccccHHHhhhh
Q 028112 121 IGFTVGIPLLVGLLFFPFFYYLKVVLKIDVPSWLPVIVSFIFFG--AALLGVNYGIVSSSW--DPLREGSLLGWNEAQRN 196 (213)
Q Consensus 121 ia~f~GiP~~lG~~~f~~~Y~L~~~~~~dvP~wv~~lvS~~~FG--lglLGISYGiLSASW--Dp~reGSlLG~eE~k~N 196 (213)
+.+...+++++++..+...--. ......+.+++..++++ .++..+.|..+.+.. |+++.+.+.|+.++-.|
T Consensus 72 ~i~~~~~~~~i~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~ 146 (437)
T TIGR00792 72 WLLIGAIPFSIVLVLLFTTPDF-----SATGKLVYAYITYILLGLFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGAT 146 (437)
T ss_pred hHHHhHHHHHHHHHHHHhCCCC-----CcchHHHHHHHHHHHHHHHHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHH
Confidence 4556667777665544321100 00011222333333333 345667788887665 56677888899888777
Q ss_pred HHHHH
Q 028112 197 WPVFW 201 (213)
Q Consensus 197 ~~~~w 201 (213)
++-+.
T Consensus 147 ~g~~l 151 (437)
T TIGR00792 147 LGGLL 151 (437)
T ss_pred HHHHH
Confidence 76543
No 32
>COG0713 NuoK NADH:ubiquinone oxidoreductase subunit 11 or 4L (chain K) [Energy production and conversion]
Probab=36.49 E-value=29 Score=27.99 Aligned_cols=21 Identities=24% Similarity=0.479 Sum_probs=17.9
Q ss_pred cCchhHHHHHHHHHHHhhhhh
Q 028112 150 VPSWLPVIVSFIFFGAALLGV 170 (213)
Q Consensus 150 vP~wv~~lvS~~~FGlglLGI 170 (213)
+|.+..++++.++|.+|+.|+
T Consensus 2 i~l~~~l~laa~LF~IGl~Gv 22 (100)
T COG0713 2 IPLQHYLILAALLFTIGLYGL 22 (100)
T ss_pred chHHHHHHHHHHHHHHHHHHH
Confidence 467778899999999999886
No 33
>PF03176 MMPL: MMPL family; InterPro: IPR004869 Proteins of this entry are putative integral membrane proteins from bacteria. Several of the members are mycobacterial proteins. Many of the proteins contain two copies of this aligned region. The function of these proteins is not known, although it has been suggested that they may be involved in lipid transport [].; GO: 0016020 membrane
Probab=36.15 E-value=19 Score=31.40 Aligned_cols=9 Identities=0% Similarity=0.253 Sum_probs=3.5
Q ss_pred hheeeeeee
Q 028112 136 FPFFYYLKV 144 (213)
Q Consensus 136 f~~~Y~L~~ 144 (213)
+++++.+.+
T Consensus 158 lvl~~~fRs 166 (333)
T PF03176_consen 158 LVLLLVFRS 166 (333)
T ss_pred hhhhhHHHH
Confidence 333333443
No 34
>COG1814 Uncharacterized membrane protein [Function unknown]
Probab=36.15 E-value=24 Score=30.59 Aligned_cols=67 Identities=15% Similarity=0.237 Sum_probs=43.2
Q ss_pred ccCCCcHHH-HHHHHhhHHHHhhhhHHhhhhhhheeeeeeeccccccCchhHHHHHHHHHHHhhhhhhhcccc
Q 028112 105 EAGVIPEIV-TNRMISRIGFTVGIPLLVGLLFFPFFYYLKVVLKIDVPSWLPVIVSFIFFGAALLGVNYGIVS 176 (213)
Q Consensus 105 ~~~aIPevV-s~RMlrRia~f~GiP~~lG~~~f~~~Y~L~~~~~~dvP~wv~~lvS~~~FGlglLGISYGiLS 176 (213)
.+..|.+.. +.++..-. +.+|+-.++|.++.++-|++...... ..+..+.+..+.++++|+-+|.+|
T Consensus 129 ~~~~i~~~~~~~~~~~~~-l~sg~s~~~G~l~Pllp~~~~~~~~~----al~~si~~~~l~L~ilG~~~a~~s 196 (229)
T COG1814 129 LSMGIGAYLSSRPLLAAT-LSSGISFIIGALLPLLPFFFLPDVLS----ALIASIILALLALAILGAVLARLS 196 (229)
T ss_pred HHHHHHHHhhhhhHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhHH----HHHHHHHHHHHHHHHHHHHHHHHc
Confidence 344566666 35555442 57888888888877777777644221 124445566777888998888776
No 35
>PRK09874 drug efflux system protein MdtG; Provisional
Probab=35.23 E-value=73 Score=27.18 Aligned_cols=78 Identities=8% Similarity=0.082 Sum_probs=39.4
Q ss_pred HHHHHHhhHHHHhhh-hHHhhhhhhheeeeeeeccccccCchhHHHHHHHHHHHh--hhhhhhccccccCCCCCCCcccc
Q 028112 113 VTNRMISRIGFTVGI-PLLVGLLFFPFFYYLKVVLKIDVPSWLPVIVSFIFFGAA--LLGVNYGIVSSSWDPLREGSLLG 189 (213)
Q Consensus 113 Vs~RMlrRia~f~Gi-P~~lG~~~f~~~Y~L~~~~~~dvP~wv~~lvS~~~FGlg--lLGISYGiLSASWDp~reGSlLG 189 (213)
++||+=||..+..+. ..+++...+.. .+++..+++..++.|++ ........+...+++++.|...|
T Consensus 77 l~dr~g~r~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (408)
T PRK09874 77 LADRKGRKIMLLRSALGMGIVMVLMGL-----------AQNIWQFLILRALLGLLGGFVPNANALIATQVPRNKSGWALG 145 (408)
T ss_pred HhhhhCcHHHHHHHHHHHHHHHHHHHH-----------HhhHHHHHHHHHHHHHhhhhHHhHHHHHHHhcCHhhhhHHHH
Confidence 467777776665554 33333322211 12233344444444442 22222223444566677788888
Q ss_pred HHHhhhhHHHHH
Q 028112 190 WNEAQRNWPVFW 201 (213)
Q Consensus 190 ~eE~k~N~~~~w 201 (213)
+-..-.+++.+.
T Consensus 146 ~~~~~~~~g~~~ 157 (408)
T PRK09874 146 TLSTGGVSGALL 157 (408)
T ss_pred HHHHHHHHHHHH
Confidence 877776666544
No 36
>PRK12307 putative sialic acid transporter; Provisional
Probab=35.10 E-value=63 Score=28.02 Aligned_cols=79 Identities=9% Similarity=0.055 Sum_probs=43.4
Q ss_pred HHHHHHHhhHHHHhhh-hHHhhhhhhheeeeeeeccccccCchhHHHHHHHHHHHhh---hhhhhccccccCCCCCCCcc
Q 028112 112 IVTNRMISRIGFTVGI-PLLVGLLFFPFFYYLKVVLKIDVPSWLPVIVSFIFFGAAL---LGVNYGIVSSSWDPLREGSL 187 (213)
Q Consensus 112 vVs~RMlrRia~f~Gi-P~~lG~~~f~~~Y~L~~~~~~dvP~wv~~lvS~~~FGlgl---LGISYGiLSASWDp~reGSl 187 (213)
.++||.=||..+..|. -+++|...+.+. +.+..+++.-++.|+|. ......+++..|++++.|..
T Consensus 75 ~l~dr~g~r~~l~~~~~~~~~~~~~~~~~-----------~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~ 143 (426)
T PRK12307 75 LLADKFGRKPLMMWSIVAYSVGTGLSGLA-----------SGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKA 143 (426)
T ss_pred HHHHHhCChHHHHHHHHHHHHHHHHHHHH-----------hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHh
Confidence 4567887787776665 333333322221 12333444444444432 22345556666777777888
Q ss_pred ccHHHhhhhHHHHH
Q 028112 188 LGWNEAQRNWPVFW 201 (213)
Q Consensus 188 LG~eE~k~N~~~~w 201 (213)
.|+-..-.+++.+.
T Consensus 144 ~~~~~~~~~lg~~~ 157 (426)
T PRK12307 144 SAFLVSGFGIGNII 157 (426)
T ss_pred hhHHHHHHhHHHHH
Confidence 88877766665544
No 37
>PRK09669 putative symporter YagG; Provisional
Probab=34.89 E-value=27 Score=31.14 Aligned_cols=37 Identities=22% Similarity=0.233 Sum_probs=27.7
Q ss_pred HhhhhhhhccccccC--CCCCCCccccHHHhhhhHHHHH
Q 028112 165 AALLGVNYGIVSSSW--DPLREGSLLGWNEAQRNWPVFW 201 (213)
Q Consensus 165 lglLGISYGiLSASW--Dp~reGSlLG~eE~k~N~~~~w 201 (213)
..+..+.|+.|.+.| |+++.+++-+|..+-.|++-+-
T Consensus 123 ~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i 161 (444)
T PRK09669 123 YTAINVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLI 161 (444)
T ss_pred HHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHH
Confidence 446888899998877 5566678888888888876443
No 38
>TIGR00891 2A0112 putative sialic acid transporter.
Probab=34.62 E-value=1.1e+02 Score=25.68 Aligned_cols=79 Identities=16% Similarity=0.237 Sum_probs=43.3
Q ss_pred HHHHHHHhhHHHHhhh-hHHhhhhhhheeeeeeeccccccCchhHHHHHHHHHHHhhh---hhhhccccccCCCCCCCcc
Q 028112 112 IVTNRMISRIGFTVGI-PLLVGLLFFPFFYYLKVVLKIDVPSWLPVIVSFIFFGAALL---GVNYGIVSSSWDPLREGSL 187 (213)
Q Consensus 112 vVs~RMlrRia~f~Gi-P~~lG~~~f~~~Y~L~~~~~~dvP~wv~~lvS~~~FGlglL---GISYGiLSASWDp~reGSl 187 (213)
.++||.=||-.+..+. -.++|...+.+ .+++..+++..++.|+|.- ......++..+++++.|..
T Consensus 69 ~l~Dr~g~r~~~~~~~~~~~~~~~~~~~-----------~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~ 137 (405)
T TIGR00891 69 LWGDRYGRRLPMVTSIVLFSAGTLACGF-----------APGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKA 137 (405)
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHHH-----------hccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHH
Confidence 4567777665555443 33333332221 1244455555555555432 2233445556677778888
Q ss_pred ccHHHhhhhHHHHH
Q 028112 188 LGWNEAQRNWPVFW 201 (213)
Q Consensus 188 LG~eE~k~N~~~~w 201 (213)
.|+-..-.+++.+.
T Consensus 138 ~~~~~~~~~~g~~~ 151 (405)
T TIGR00891 138 SGLLISGYAVGAVV 151 (405)
T ss_pred HHHHHHHHHHHHHH
Confidence 88887776666544
No 39
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=34.56 E-value=46 Score=26.46 Aligned_cols=26 Identities=35% Similarity=0.580 Sum_probs=18.9
Q ss_pred HHhhHHHHhhhhHHhhhhhhheeeeeeec
Q 028112 117 MISRIGFTVGIPLLVGLLFFPFFYYLKVV 145 (213)
Q Consensus 117 MlrRia~f~GiP~~lG~~~f~~~Y~L~~~ 145 (213)
|+.-|++.+.+|+++|+.+- +||..+
T Consensus 44 ~~g~IG~~~v~pil~G~~lG---~WLD~~ 69 (100)
T TIGR02230 44 MFGLIGWSVAIPTLLGVAVG---IWLDRH 69 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHhh
Confidence 56778888999999988743 355544
No 40
>PF13038 DUF3899: Domain of unknown function (DUF3899)
Probab=34.49 E-value=24 Score=26.10 Aligned_cols=8 Identities=50% Similarity=0.480 Sum_probs=3.1
Q ss_pred HHhhhhhh
Q 028112 129 LLVGLLFF 136 (213)
Q Consensus 129 ~~lG~~~f 136 (213)
.++.+...
T Consensus 80 ~ll~l~~i 87 (92)
T PF13038_consen 80 LLLILLSI 87 (92)
T ss_pred HHHHHHHH
Confidence 34433333
No 41
>PF07589 VPEP: PEP-CTERM motif; InterPro: IPR013424 This entry describes a 25-residue region including an invariant Pro-Glu-Pro (PEP) motif, a thirteen residue strongly hydrophobic sequence likely to span the membrane, and a five-residue strongly basic motif that often contains four Arg residues. In most cases, this motif is found within nine residues of the C-terminal end of the protein. Proteins containing this motif typically have signal sequences at the N terminus [].
Probab=34.15 E-value=32 Score=20.95 Aligned_cols=14 Identities=29% Similarity=0.804 Sum_probs=9.8
Q ss_pred HHHHHHHhhhhhhh
Q 028112 159 SFIFFGAALLGVNY 172 (213)
Q Consensus 159 S~~~FGlglLGISY 172 (213)
++++|++|++|+..
T Consensus 7 t~~l~~~gl~~l~~ 20 (25)
T PF07589_consen 7 TLALLGLGLLGLAF 20 (25)
T ss_pred HHHHHHHHHHHHHH
Confidence 46677778877765
No 42
>PF00335 Tetraspannin: Tetraspanin family RDS_ROM1 subfamily; InterPro: IPR018499 A number of eukaryotic CD antigens have been shown to be related []. CD9 (also called DRAP-27, MRP-1 or p24) upregulates HB-EGF activity as a receptor for diphtheria toxin as well as its juxtacrine activity. CD9 mAbs modulate cell adhesion and migration and trigger platelet activation that is blocked by mAbs directed to the platelet Fc receptor CD32. In mice, CD9 mAb KMC8.8 has been shown to inhibit the production of myeloid cells in vitro and has a costimulatory activity for T cells. CD9 is a type III membrane protein, with four putative transmembrane domains. CD37 (or gp52-40) is involved in signal transduction and serves as a stable marker for malignancies derived from mature B cells, like B-CLL, HCL, and all types of B-NHL. CD63 transfection reduced melanoma cell motility on fibronectin, collagen and laminin, and reduced the growth and metastasis of melanoma cells in nude mice []. CD63 has been used as a marker for late endosomes and for primary melanomas. These proteins are all type II membrane proteins: they contain an N-terminal transmembrane (TM) domain, which acts both as a signal sequence and a membrane anchor, and 3 additional TM regions (hence the name 'TM4'). The sequences contain a number of conserved cysteine residues. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0016021 integral to membrane; PDB: 1IV5_A 1G8Q_A.
Probab=33.52 E-value=14 Score=28.43 Aligned_cols=13 Identities=15% Similarity=0.434 Sum_probs=0.0
Q ss_pred HHHHHHHHhhhhh
Q 028112 158 VSFIFFGAALLGV 170 (213)
Q Consensus 158 vS~~~FGlglLGI 170 (213)
+.++.+.++++|+
T Consensus 52 ~G~~~~~~~~~G~ 64 (221)
T PF00335_consen 52 IGIFILIISFLGC 64 (221)
T ss_dssp -------------
T ss_pred HHHHHHHHHHHHH
Confidence 3334444455554
No 43
>KOG3882 consensus Tetraspanin family integral membrane protein [General function prediction only]
Probab=33.14 E-value=60 Score=27.25 Aligned_cols=22 Identities=27% Similarity=0.495 Sum_probs=19.1
Q ss_pred ccCchhHHHHHHHHHHHhhhhh
Q 028112 149 DVPSWLPVIVSFIFFGAALLGV 170 (213)
Q Consensus 149 dvP~wv~~lvS~~~FGlglLGI 170 (213)
..+.|+.+++..+.|.+|++|.
T Consensus 50 ~~~~~ili~~G~v~~~v~flGc 71 (237)
T KOG3882|consen 50 LVPAYILIAVGGVVFLVGFLGC 71 (237)
T ss_pred hcchhhhhhhhHHHHHHHHhhh
Confidence 4688999999999999999994
No 44
>TIGR00898 2A0119 cation transport protein.
Probab=32.34 E-value=90 Score=28.04 Aligned_cols=80 Identities=6% Similarity=0.006 Sum_probs=41.0
Q ss_pred HHHHHHHhhHHHHhhhhHHhhhhhhheeeeeeeccccccCchhHHHHHHHHHHHhhhh---hhhccccccCCCCCCCccc
Q 028112 112 IVTNRMISRIGFTVGIPLLVGLLFFPFFYYLKVVLKIDVPSWLPVIVSFIFFGAALLG---VNYGIVSSSWDPLREGSLL 188 (213)
Q Consensus 112 vVs~RMlrRia~f~GiP~~lG~~~f~~~Y~L~~~~~~dvP~wv~~lvS~~~FGlglLG---ISYGiLSASWDp~reGSlL 188 (213)
.++||.-||..+..+.-+.. ++.+.. .+ .|++..+++..++.|+|.-+ +.+.+++--.++++.|...
T Consensus 149 ~l~Dr~Grr~~~~~~~~~~~-i~~~~~-~~--------~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~r~~~~ 218 (505)
T TIGR00898 149 YLSDRFGRKKVLLLSTLVTA-VSGVLT-AF--------SPNYTVFLVFRLLVGMGIGGIWVQAVVLNTEFLPKKQRAIVG 218 (505)
T ss_pred HhhhhccchHHHHHHHHHHH-HHHHHH-HH--------cccHHHHHHHHHHHHhhccchHHHHHHHhheecChhhhHHHH
Confidence 45788888877766653222 111111 11 23444555555555544333 3444555555555567777
Q ss_pred cHHHhhhhHHHHH
Q 028112 189 GWNEAQRNWPVFW 201 (213)
Q Consensus 189 G~eE~k~N~~~~w 201 (213)
|+-.+--+++.+.
T Consensus 219 ~~~~~~~~~g~~~ 231 (505)
T TIGR00898 219 TLIQVFFSLGLVL 231 (505)
T ss_pred HHHHHHHHHHHHH
Confidence 7665555555443
No 45
>PF08566 Pam17: Mitochondrial import protein Pam17; InterPro: IPR013875 The presequence translocase-associated motor (PAM) drives the completion of preprotein translocation into the mitochondrial matrix. The Pam17 subunit is required for formation of a stable complex between cochaperones Pam16 and Pam18 and promotes the association of Pam16-Pam18 with the presequence translocase []. Mitochondria lacking Pam17 are selectively impaired in the import of matrix proteins [].
Probab=32.08 E-value=53 Score=28.64 Aligned_cols=27 Identities=19% Similarity=0.048 Sum_probs=21.4
Q ss_pred HHhhHHHHhhhhHHhhhhhhheeeeee
Q 028112 117 MISRIGFTVGIPLLVGLLFFPFFYYLK 143 (213)
Q Consensus 117 MlrRia~f~GiP~~lG~~~f~~~Y~L~ 143 (213)
==||+...++||++++-+...+.|+..
T Consensus 36 ~rrr~~~~~si~t~~~g~~~g~~yl~~ 62 (173)
T PF08566_consen 36 SRRRINLVSSIPTGLLGSSAGWAYLST 62 (173)
T ss_pred HhhHHHHHhHHHHHHHHHHHHHHHHhh
Confidence 346889999999998887777777663
No 46
>PRK08386 putative monovalent cation/H+ antiporter subunit B; Reviewed
Probab=31.30 E-value=41 Score=28.01 Aligned_cols=34 Identities=29% Similarity=0.522 Sum_probs=23.6
Q ss_pred hHHHHHHHHHHHhhhhhhhccccccCCCCCCCcccc
Q 028112 154 LPVIVSFIFFGAALLGVNYGIVSSSWDPLREGSLLG 189 (213)
Q Consensus 154 v~~lvS~~~FGlglLGISYGiLSASWDp~reGSlLG 189 (213)
+..+.-+++.++|++|+-+|.|...|.. .+.++|
T Consensus 71 l~~~Gll~~~~~gl~~l~~gfl~~~~~~--~~~~l~ 104 (151)
T PRK08386 71 LEGLGGLVFLGAAMLGISVAFFYNILWH--TGPLFG 104 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc--cccccc
Confidence 4444556788899999999966666665 456655
No 47
>KOG4737 consensus ATPase membrane sector associated protein [Energy production and conversion]
Probab=31.23 E-value=47 Score=31.51 Aligned_cols=34 Identities=29% Similarity=0.444 Sum_probs=26.3
Q ss_pred cccCc-hhHHHHHHHHHHHhhhhhhhccccccCCCCC
Q 028112 148 IDVPS-WLPVIVSFIFFGAALLGVNYGIVSSSWDPLR 183 (213)
Q Consensus 148 ~dvP~-wv~~lvS~~~FGlglLGISYGiLSASWDp~r 183 (213)
.|.|. +..++.-++.|+++|+=|.||| ||.||++
T Consensus 277 sdYpviFni~Lw~mvil~lali~i~y~i--a~mDPg~ 311 (326)
T KOG4737|consen 277 SDYPVIFNIFLWLMVILVLALIYIVYGI--ASMDPGK 311 (326)
T ss_pred CCccHHHHHHHHHHHHHHHHHHHHHhhh--hccCCCc
Confidence 45554 3456667899999999999999 6789975
No 48
>PF15383 TMEM237: Transmembrane protein 237
Probab=30.95 E-value=88 Score=28.33 Aligned_cols=38 Identities=21% Similarity=0.158 Sum_probs=28.0
Q ss_pred HHHHHHhhHHHHh-hhhHHhhhhhhheeeeeeecccccc
Q 028112 113 VTNRMISRIGFTV-GIPLLVGLLFFPFFYYLKVVLKIDV 150 (213)
Q Consensus 113 Vs~RMlrRia~f~-GiP~~lG~~~f~~~Y~L~~~~~~dv 150 (213)
-.+|-.++++++| |+-.++++.=+++.|.|...+...+
T Consensus 89 ~vq~~f~~~~~~~hG~LAG~al~h~i~v~~l~~~~~~~~ 127 (253)
T PF15383_consen 89 RVQRAFRVIGLFCHGFLAGFALWHIIVVYVLAGYQLSTV 127 (253)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Confidence 3688888888776 8877778777777888877655433
No 49
>PF02687 FtsX: FtsX-like permease family; InterPro: IPR003838 This domain is found in predicted permeases and hypothetical transmembrane proteins. P57382 from SWISSPROT has been shown to transport lipids targeted to the outer membrane across the inner membrane. Both P57382 and O54500 from SWISSPROT have been shown to require ATP. This domain contains three transmembrane helices.; GO: 0016020 membrane
Probab=30.19 E-value=66 Score=22.76 Aligned_cols=62 Identities=13% Similarity=0.230 Sum_probs=35.6
Q ss_pred CCcHHHHHHHHhhHHHHhhhhHHhhhhhhheeeeee---------eccccccCchhHHHHHHHHHHHhhhh
Q 028112 108 VIPEIVTNRMISRIGFTVGIPLLVGLLFFPFFYYLK---------VVLKIDVPSWLPVIVSFIFFGAALLG 169 (213)
Q Consensus 108 aIPevVs~RMlrRia~f~GiP~~lG~~~f~~~Y~L~---------~~~~~dvP~wv~~lvS~~~FGlglLG 169 (213)
.=+..+...++...++.+.+..++|+.....++.+. ....+.++.+..+.+.++++++.++.
T Consensus 38 ~s~~~i~~~~~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 108 (121)
T PF02687_consen 38 ASKRQIRKMFLYEALLIALIGILIGILLGILLIIFLINFLSKFFGDSFPFTISPWSFLIVFIIILLISIIA 108 (121)
T ss_pred CChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccceeeeeCHHHHHHHHHHHHHHHHHH
Confidence 344556666677777777777777765444333332 33345566666666655555555444
No 50
>PF12666 PrgI: PrgI family protein; InterPro: IPR024414 This family of bacterial proteins is functionally uncharacterised. Proteins in this family are typically between 116 and 146 amino acids in length. PrgI is found encoded on plasmids of Enterococcus faecalis, its function is not known.
Probab=29.90 E-value=30 Score=25.51 Aligned_cols=64 Identities=19% Similarity=0.348 Sum_probs=30.8
Q ss_pred hhHHHHhhhhHHhhhhhhheeeeeeeccccccCchhHHHHHHHHHHHhhhhhhhccccccCCCCCCCccccHHHhhhhHH
Q 028112 119 SRIGFTVGIPLLVGLLFFPFFYYLKVVLKIDVPSWLPVIVSFIFFGAALLGVNYGIVSSSWDPLREGSLLGWNEAQRNWP 198 (213)
Q Consensus 119 rRia~f~GiP~~lG~~~f~~~Y~L~~~~~~dvP~wv~~lvS~~~FGlglLGISYGiLSASWDp~reGSlLG~eE~k~N~~ 198 (213)
.|=.++.++..++|.+++.+.+.... .++-.|+.+++++.++.+|+. . ..| +-+|+.-..+-
T Consensus 19 ~RQl~~l~~~~~~~~~~~~~~~~~l~---~~~~~~~~i~~~~p~~~~g~~-----------k--~~g--l~~e~~l~~~~ 80 (93)
T PF12666_consen 19 LRQLICLAIGALVGVGVYLLLWFFLG---PDIASWIMIPIALPFAFLGFF-----------K--KDG--LPLEKYLKYAI 80 (93)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcc---HHHHHHHHHHHHHHHHHhHhh-----------h--hcC--CCHHHHHHHHH
Confidence 35556666666666665554433332 233334444444443333332 2 345 66666655444
Q ss_pred HH
Q 028112 199 VF 200 (213)
Q Consensus 199 ~~ 200 (213)
+.
T Consensus 81 ~~ 82 (93)
T PF12666_consen 81 KF 82 (93)
T ss_pred HH
Confidence 33
No 51
>COG4967 PilV Tfp pilus assembly protein PilV [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=29.87 E-value=38 Score=29.04 Aligned_cols=43 Identities=12% Similarity=0.265 Sum_probs=26.7
Q ss_pred HHHHHHHHHhhhhhhhcc-------ccccCCCCCCCccccHHHhhhhHHHHHHHHhhCCC
Q 028112 157 IVSFIFFGAALLGVNYGI-------VSSSWDPLREGSLLGWNEAQRNWPVFWQSLWSGGG 209 (213)
Q Consensus 157 lvS~~~FGlglLGISYGi-------LSASWDp~reGSlLG~eE~k~N~~~~w~s~~~~~~ 209 (213)
+++++++++||||+.==. .+|+|+- ++..=|..+|+.++..+.
T Consensus 18 LIA~lll~vglLgla~lQ~~s~~~t~~a~~r~----------~~~~l~~~~~e~m~an~~ 67 (162)
T COG4967 18 LIAMLLLSVGLLGLAGLQARTLRNTQEARQRS----------IAAQLWQNLLERMRANRS 67 (162)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHcCCC
Confidence 788899999999975222 3445542 233346667777766543
No 52
>TIGR00145 FTR1 family protein. A characterized member from yeast acts as oxidase-coupled high affinity iron transporter. Note that the apparent member from E. coli K12-MG1655 has a frameshift by homology with member sequences from other species.
Probab=29.85 E-value=32 Score=31.32 Aligned_cols=48 Identities=23% Similarity=0.127 Sum_probs=32.9
Q ss_pred HHhhhhhhheeeeeeeccccccCchhHHHHHH---HHHHHhhhh------hhhcccc
Q 028112 129 LLVGLLFFPFFYYLKVVLKIDVPSWLPVIVSF---IFFGAALLG------VNYGIVS 176 (213)
Q Consensus 129 ~~lG~~~f~~~Y~L~~~~~~dvP~wv~~lvS~---~~FGlglLG------ISYGiLS 176 (213)
.++|+++..+.+|+.-+....+|.-..|.++. .++++|++| ...|.+.
T Consensus 157 ~~~Gl~~~~~~g~li~~~~~~i~l~~FF~~t~~lL~llAagl~~~gv~~lq~ag~l~ 213 (283)
T TIGR00145 157 AVAGLIVAVVVGVLLYRGGSRLSLKIFFILSSSLLLFIAAGLLGGGNHRFNLAGGGD 213 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCC
Confidence 45666666667777667777888777776663 556778888 6666655
No 53
>PF01788 PsbJ: PsbJ; InterPro: IPR002682 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbJ found in PSII. PsbJ is one of the most hydrophobic proteins in the thylakoid membrane, and is located in a gene cluster with PsbE, PsbF and PsbL (PsbEFJL). Both PsbJ and PsbL (IPR003372 from INTERPRO) are essential for proper assembly of the OEC. Mutations in PsbJ cause the light-harvesting antenna to remain detached from the PSII dimers []. In addition, both PsbJ and PsbL are involved in the unidirectional flow of electrons, where PsbJ regulates the forward electron flow from D2 (Qa) to the plastoquinone pool, and PsbL prevents the reduction of PSII by back electron flow from plastoquinol protecting PSII from photo-inactivation [].; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane; PDB: 3A0H_J 3ARC_J 3A0B_J 3KZI_J 2AXT_J 3PRQ_J 4FBY_b 3BZ2_J 1S5L_j 3PRR_J ....
Probab=29.64 E-value=48 Score=22.94 Aligned_cols=22 Identities=27% Similarity=0.410 Sum_probs=14.7
Q ss_pred ccCchhHHHHHHHHHHHhhhhhh
Q 028112 149 DVPSWLPVIVSFIFFGAALLGVN 171 (213)
Q Consensus 149 dvP~wv~~lvS~~~FGlglLGIS 171 (213)
.||.|++..+. ++..+|++||-
T Consensus 7 RIPLWlVgtv~-G~~vi~lvglF 28 (40)
T PF01788_consen 7 RIPLWLVGTVA-GIAVIGLVGLF 28 (40)
T ss_dssp SS-HHHHHHHH-HHHHHHHHHHH
T ss_pred cccchHHHHHH-HHHHHHHHHHh
Confidence 68999865444 46778888873
No 54
>COG5249 RER1 Golgi protein involved in Golgi-to-ER retrieval [Intracellular trafficking and secretion]
Probab=29.01 E-value=1.7e+02 Score=25.63 Aligned_cols=20 Identities=30% Similarity=0.665 Sum_probs=15.1
Q ss_pred ccccCchhHHHHHHHHHHHh
Q 028112 147 KIDVPSWLPVIVSFIFFGAA 166 (213)
Q Consensus 147 ~~dvP~wv~~lvS~~~FGlg 166 (213)
++|||..-+.++-...|..+
T Consensus 133 IfDvPVfwPILvvYfi~l~f 152 (180)
T COG5249 133 IFDVPVFWPILVVYFIFLVF 152 (180)
T ss_pred hhcchhhhHHHHHHHHHHHH
Confidence 57999999988877666443
No 55
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=28.97 E-value=73 Score=29.24 Aligned_cols=75 Identities=17% Similarity=0.092 Sum_probs=35.5
Q ss_pred HHHHHHHhhHHHHhhhh-HHhhhhhhheeeeeeeccccccCchhHHHHHHHHHHHhhhhh--hhccccccCCCCCCCccc
Q 028112 112 IVTNRMISRIGFTVGIP-LLVGLLFFPFFYYLKVVLKIDVPSWLPVIVSFIFFGAALLGV--NYGIVSSSWDPLREGSLL 188 (213)
Q Consensus 112 vVs~RMlrRia~f~GiP-~~lG~~~f~~~Y~L~~~~~~dvP~wv~~lvS~~~FGlglLGI--SYGiLSASWDp~reGSlL 188 (213)
.++||+-||..+.+++- .++++..+.+ .+++..+++..++.|+|..+. ...+++--+.+++.|...
T Consensus 93 ~l~dr~G~r~~~~~~~~~~~~~~~~~~~-----------~~s~~~l~~~r~l~G~~~~~~~~~~~~i~~~~~~~~rg~a~ 161 (476)
T PLN00028 93 PVCDLYGPRYGSAFLLMLTAPAVFCMSL-----------VSSATGFIAVRFFIGFSLATFVSCQYWMSTMFNGKIVGTAN 161 (476)
T ss_pred HHHHHhCChHHHHHHHHHHHHHHHHHHH-----------hcCHHHHHHHHHHHHHHHHhhHHHHHHHHHhcChhheeHHH
Confidence 34588887776666552 2222222211 112333444444444433221 222344445566778888
Q ss_pred cHHHhhhhH
Q 028112 189 GWNEAQRNW 197 (213)
Q Consensus 189 G~eE~k~N~ 197 (213)
|+-..-.|+
T Consensus 162 g~~~~~~~~ 170 (476)
T PLN00028 162 GIAAGWGNL 170 (476)
T ss_pred HHHHHHHHH
Confidence 876543333
No 56
>PRK05122 major facilitator superfamily transporter; Provisional
Probab=28.90 E-value=65 Score=27.76 Aligned_cols=86 Identities=14% Similarity=0.163 Sum_probs=42.1
Q ss_pred HHHHHHHhhHHHHhhh-hHHhhhhhhheeeeeeeccccccCchhHHHHHHHHHHHhhhhhhhcc---ccccCCCCCCCcc
Q 028112 112 IVTNRMISRIGFTVGI-PLLVGLLFFPFFYYLKVVLKIDVPSWLPVIVSFIFFGAALLGVNYGI---VSSSWDPLREGSL 187 (213)
Q Consensus 112 vVs~RMlrRia~f~Gi-P~~lG~~~f~~~Y~L~~~~~~dvP~wv~~lvS~~~FGlglLGISYGi---LSASWDp~reGSl 187 (213)
.++||.=||-.+..+. -.+++...+.+..+.. .+.+..+..+++..+++|+|.-++.... +..-+++++.|..
T Consensus 73 ~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~ 149 (399)
T PRK05122 73 RYADTLGPKKAVVFGLCGCALSGLLYLLAGLLA---AWPVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALHTGRV 149 (399)
T ss_pred hHHhccCCcchHHHHHHHHHHHHHHHHHhhhhh---ccchhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhhhccc
Confidence 4567776666665554 3333322222222111 1122233344444455555443333222 2345677788999
Q ss_pred ccHHHhhhhHHHH
Q 028112 188 LGWNEAQRNWPVF 200 (213)
Q Consensus 188 LG~eE~k~N~~~~ 200 (213)
.|+-..-.+.+-+
T Consensus 150 ~~~~~~~~~~g~~ 162 (399)
T PRK05122 150 ISWNGIATYGALA 162 (399)
T ss_pred hhhhhhhhhHHHH
Confidence 8887766655543
No 57
>PF15473 PCNP: PEST, proteolytic signal-containing nuclear protein family
Probab=27.83 E-value=58 Score=27.99 Aligned_cols=49 Identities=24% Similarity=0.315 Sum_probs=25.7
Q ss_pred CccccccCCCCCCCCCCccCcCCCCCCCCCCCCCCccccccccccCCCcHHHHHHH
Q 028112 62 SPLYATLNGPRGFGPPPKKTKKAKKPKTGNDSDDDEDEEGDEAEAGVIPEIVTNRM 117 (213)
Q Consensus 62 ~~~~a~~~~~kgF~p~~kk~kk~k~~~~~~~~d~dd~~e~~~~~~~aIPevVs~RM 117 (213)
.+++-.|...|+.++.+.-..+ +..-...=|+|||+|.++ +|.+---||
T Consensus 67 ~~isiklgs~k~ke~~p~~~~~-~~~va~~Fn~d~d~e~eE------mP~eakmRM 115 (150)
T PF15473_consen 67 SAISIKLGSSKPKEPVPLLKPK-KLSVAAVFNEDDDSEPEE------MPPEAKMRM 115 (150)
T ss_pred CceeeccCcCCccCCCcccCCC-cchhhhhhccccccChhh------CCHHHHHHH
Confidence 5666666777777776533221 222222333333333233 788777776
No 58
>PF12606 RELT: Tumour necrosis factor receptor superfamily member 19; InterPro: IPR022248 The members of tumor necrosis factor receptor (TNFR) superfamily have been designated as the "guardians of the immune system" due to their roles in immune cell proliferation, differentiation, activation, and death (apoptosis). RELT (receptor expressed in lymphoid tissues) is a member of the TNFR superfamily. The messenger RNA of RELT is especially abundant in hematologic tissues such as spleen, lymph node, and peripheral blood leukocytes as well as in leukemias and lymphomas. RELT is able to activate the NF-kappaB pathway and selectively binds tumor necrosis factor receptor-associated factor 1 []. RELT like proteins 1 and 2 (RELL1 and RELL2) are two RELT homologues that bind to RELT. The expression of RELL1 at the mRNA level is ubiquitous, whereas expression of RELL2 mRNA is more restricted to particular tissues [].
Probab=27.74 E-value=36 Score=24.16 Aligned_cols=22 Identities=23% Similarity=0.348 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHhhhhhhhcccc
Q 028112 155 PVIVSFIFFGAALLGVNYGIVS 176 (213)
Q Consensus 155 ~~lvS~~~FGlglLGISYGiLS 176 (213)
.+++-.+||.+|+||++-=-+|
T Consensus 3 ~~~iV~i~iv~~lLg~~I~~~~ 24 (50)
T PF12606_consen 3 AFLIVSIFIVMGLLGLSICTTL 24 (50)
T ss_pred ehHHHHHHHHHHHHHHHHHHHh
Confidence 3455557777899998754443
No 59
>COG3090 DctM TRAP-type C4-dicarboxylate transport system, small permease component [Carbohydrate transport and metabolism]
Probab=27.64 E-value=84 Score=26.29 Aligned_cols=78 Identities=23% Similarity=0.376 Sum_probs=52.3
Q ss_pred HHHHHhhHHHHhhhhHHhhhhhhheeeeeeecccc-ccCchhHHHHHHHHHHHhhhhhhhccccccCCCCCCCccccHHH
Q 028112 114 TNRMISRIGFTVGIPLLVGLLFFPFFYYLKVVLKI-DVPSWLPVIVSFIFFGAALLGVNYGIVSSSWDPLREGSLLGWNE 192 (213)
Q Consensus 114 s~RMlrRia~f~GiP~~lG~~~f~~~Y~L~~~~~~-dvP~wv~~lvS~~~FGlglLGISYGiLSASWDp~reGSlLG~eE 192 (213)
..+-+.|+.-.++.-.+.+|...+ ++=+..|..+ +-+.|.==+.-++|-.+..+|++||+ |++.=+|.+-
T Consensus 8 ~~~~~~~~l~~v~~~ll~~m~~iv-~~~V~~Ry~~~~~~~WseElar~lfvwl~flGa~~~~--------r~~~Hi~vd~ 78 (177)
T COG3090 8 LGKAIDRLLEAVAAALLAAMVLIV-FLQVFTRYVFNSPISWSEELARLLFVWLIFLGAAYGV--------REGGHIGVDV 78 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCCCcccHHHHHHHHHHHHHHHHHHHHh--------ccCCeeeehH
Confidence 344556777777776666665444 3333444444 66678777888888899999999997 5677777776
Q ss_pred hhhhHHHH
Q 028112 193 AQRNWPVF 200 (213)
Q Consensus 193 ~k~N~~~~ 200 (213)
+..=+++-
T Consensus 79 l~~~lp~~ 86 (177)
T COG3090 79 LVNLLPPR 86 (177)
T ss_pred HHHhCCHH
Confidence 66544443
No 60
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=27.40 E-value=42 Score=28.84 Aligned_cols=25 Identities=28% Similarity=0.547 Sum_probs=16.8
Q ss_pred HHHhhhhHHhhhhhhheeeeeeecc
Q 028112 122 GFTVGIPLLVGLLFFPFFYYLKVVL 146 (213)
Q Consensus 122 a~f~GiP~~lG~~~f~~~Y~L~~~~ 146 (213)
++=+|+|++||+++++++|.++.+.
T Consensus 55 VVGVGg~ill~il~lvf~~c~r~kk 79 (154)
T PF04478_consen 55 VVGVGGPILLGILALVFIFCIRRKK 79 (154)
T ss_pred EecccHHHHHHHHHhheeEEEeccc
Confidence 3344559999988888666665554
No 61
>PRK10591 hypothetical protein; Provisional
Probab=26.81 E-value=40 Score=26.83 Aligned_cols=39 Identities=23% Similarity=0.417 Sum_probs=26.6
Q ss_pred HHhhhhhhheeeeeeeccccccCchh---HHHHHHHHHHHhhh
Q 028112 129 LLVGLLFFPFFYYLKVVLKIDVPSWL---PVIVSFIFFGAALL 168 (213)
Q Consensus 129 ~~lG~~~f~~~Y~L~~~~~~dvP~wv---~~lvS~~~FGlglL 168 (213)
=++||..+++.|+.. ++.+.+|.|. ...+.++|.|+|+.
T Consensus 15 E~lGi~LLv~a~Lsi-ndyl~lP~~l~~~~aai~mif~Gi~lm 56 (92)
T PRK10591 15 EVLGMLLLVVAYLSL-NDYLSLPEPLSTPTAAILMIFLGVLLM 56 (92)
T ss_pred HHHHHHHHHHHHHHH-cccccCCccccCchHHHHHHHHHHHHh
Confidence 357888888887654 4466788765 35566777777664
No 62
>PF14812 PBP1_TM: Transmembrane domain of transglycosylase PBP1 at N-terminal; PDB: 3FWL_A 3VMA_A.
Probab=26.76 E-value=19 Score=27.95 Aligned_cols=17 Identities=18% Similarity=0.192 Sum_probs=0.0
Q ss_pred cccCCCcHHHHHHHHhh
Q 028112 104 AEAGVIPEIVTNRMISR 120 (213)
Q Consensus 104 ~~~~aIPevVs~RMlrR 120 (213)
.++..+|.-...|+-+|
T Consensus 48 eeee~m~rK~k~r~rkK 64 (81)
T PF14812_consen 48 EEEEPMPRKGKKRPRKK 64 (81)
T ss_dssp -----------------
T ss_pred hhccccccccccCcccc
Confidence 45667888877764443
No 63
>PF14898 DUF4491: Domain of unknown function (DUF4491)
Probab=26.48 E-value=65 Score=25.77 Aligned_cols=37 Identities=14% Similarity=0.198 Sum_probs=17.6
Q ss_pred HHhhhhHHhhhhhhheeeeeeeccccccCchhHHHHHH
Q 028112 123 FTVGIPLLVGLLFFPFFYYLKVVLKIDVPSWLPVIVSF 160 (213)
Q Consensus 123 ~f~GiP~~lG~~~f~~~Y~L~~~~~~dvP~wv~~lvS~ 160 (213)
+..|+-+++-+++|--. .++....+-...|-.|++..
T Consensus 6 iiigi~tFliIG~fHpi-VIk~EYyfg~~~W~~FL~~G 42 (94)
T PF14898_consen 6 IIIGIATFLIIGLFHPI-VIKGEYYFGTRIWPIFLLAG 42 (94)
T ss_pred HHHHHHHHHHHHccCeE-EEEEEEecCCCcHHHHHHHH
Confidence 44455566666555422 22333334445566665543
No 64
>PF03613 EIID-AGA: PTS system mannose/fructose/sorbose family IID component; InterPro: IPR004704 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Man family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of Escherichia coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine,N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the IID subunits of this family of PTS transporters.; GO: 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016021 integral to membrane
Probab=25.96 E-value=35 Score=30.89 Aligned_cols=42 Identities=33% Similarity=0.447 Sum_probs=22.9
Q ss_pred hHHhhhhhhheeeeeeeccccccCchhHHHHHHHHHHHhhhhh
Q 028112 128 PLLVGLLFFPFFYYLKVVLKIDVPSWLPVIVSFIFFGAALLGV 170 (213)
Q Consensus 128 P~~lG~~~f~~~Y~L~~~~~~dvP~wv~~lvS~~~FGlglLGI 170 (213)
|-+|.+++..+.||+..+..+. |.++.++.-.+.+.++++||
T Consensus 222 P~lLpl~~~~~~y~ll~kk~~~-~~~~i~~~~vi~iv~~~~Gi 263 (264)
T PF03613_consen 222 PGLLPLLLTLLVYWLLKKKKVS-PTKLILIIIVIGIVGAALGI 263 (264)
T ss_pred hhHHHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHHHHHhcc
Confidence 6666666555566665555433 34555544445555555553
No 65
>PF11947 DUF3464: Protein of unknown function (DUF3464); InterPro: IPR021855 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 137 to 196 amino acids in length.
Probab=25.93 E-value=1.4e+02 Score=25.35 Aligned_cols=29 Identities=21% Similarity=0.359 Sum_probs=21.2
Q ss_pred CCCcHHHHHHHHhhHHHHhhhhHHhhhhh
Q 028112 107 GVIPEIVTNRMISRIGFTVGIPLLVGLLF 135 (213)
Q Consensus 107 ~aIPevVs~RMlrRia~f~GiP~~lG~~~ 135 (213)
..+=+.+..||+-++++-+++-+++-+++
T Consensus 55 ~~Vs~RM~rRm~~~~GiP~~lG~~~f~~~ 83 (153)
T PF11947_consen 55 EVVSNRMLRRMAVFVGIPTALGVAVFVVF 83 (153)
T ss_pred HHHHHHHHHHHHHHhchHHHHHHHHHHHH
Confidence 45889999999999988666555444443
No 66
>PLN02220 delta-9 acyl-lipid desaturase
Probab=25.69 E-value=92 Score=28.73 Aligned_cols=23 Identities=13% Similarity=0.427 Sum_probs=17.2
Q ss_pred chhHHHHHHHHHHHhhhhhhhcc
Q 028112 152 SWLPVIVSFIFFGAALLGVNYGI 174 (213)
Q Consensus 152 ~wv~~lvS~~~FGlglLGISYGi 174 (213)
.|..+++.++++.++.+||+-|.
T Consensus 54 ~w~~~~~~~~~~~it~lGiT~Gy 76 (299)
T PLN02220 54 KWEALRFGLILYIVTGLSITFSY 76 (299)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHH
Confidence 36677777777778889998773
No 67
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=24.95 E-value=39 Score=27.74 Aligned_cols=80 Identities=16% Similarity=0.127 Sum_probs=40.7
Q ss_pred HHHHHHHhhHHHHhhh-hHHhhhhhhheeeeeeeccccccCchhHHHHHHHHHHHhh---hhhhhccccccCCCCCCCcc
Q 028112 112 IVTNRMISRIGFTVGI-PLLVGLLFFPFFYYLKVVLKIDVPSWLPVIVSFIFFGAAL---LGVNYGIVSSSWDPLREGSL 187 (213)
Q Consensus 112 vVs~RMlrRia~f~Gi-P~~lG~~~f~~~Y~L~~~~~~dvP~wv~~lvS~~~FGlgl---LGISYGiLSASWDp~reGSl 187 (213)
.++||.=||..+..|. -.+++...+.+. ++...+++..++.|++. ....+.+++.-.++++.|..
T Consensus 52 ~l~dr~g~r~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~ 120 (379)
T TIGR00881 52 SVSDRSNPRVFLPIGLILCAIVNLFFGFS-----------TSLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTW 120 (379)
T ss_pred HHHHhhCCeehhHHHHHHHHHHHHHHHHh-----------hhHHHHHHHHHHHHhhccccCCchHHHHHHhcCHhhheee
Confidence 4577776666555554 344444433321 13333444444443322 12223344444455567888
Q ss_pred ccHHHhhhhHHHHHH
Q 028112 188 LGWNEAQRNWPVFWQ 202 (213)
Q Consensus 188 LG~eE~k~N~~~~w~ 202 (213)
.|+-..-.+++-+.-
T Consensus 121 ~~~~~~~~~~g~~~~ 135 (379)
T TIGR00881 121 VSFWNCSHNVGGGLL 135 (379)
T ss_pred EeehhccchhHHHHH
Confidence 888777776665443
No 68
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=24.92 E-value=84 Score=31.42 Aligned_cols=34 Identities=18% Similarity=0.115 Sum_probs=25.0
Q ss_pred hhhccccccCCCCCCCccccHHHhhhhHHHHHHH
Q 028112 170 VNYGIVSSSWDPLREGSLLGWNEAQRNWPVFWQS 203 (213)
Q Consensus 170 ISYGiLSASWDp~reGSlLG~eE~k~N~~~~w~s 203 (213)
..+.+++--+.+++.|...|+-..-.+++-+.-.
T Consensus 123 ~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~ 156 (1146)
T PRK08633 123 AKYGIIPELVGKENLSRANGLLEAFTIVAILAGT 156 (1146)
T ss_pred HHHhhhHHhcCcccchhhhhHHHHHHHHHHHHHH
Confidence 3345666667778889999999988888766543
No 69
>PF07235 DUF1427: Protein of unknown function (DUF1427); InterPro: IPR009872 This family consists of several bacterial proteins of around 100 residues in length. The function of this family is unknown.
Probab=24.90 E-value=36 Score=27.02 Aligned_cols=26 Identities=31% Similarity=0.364 Sum_probs=18.4
Q ss_pred HHhhhhhhheeeeeeeccccccCchhHH
Q 028112 129 LLVGLLFFPFFYYLKVVLKIDVPSWLPV 156 (213)
Q Consensus 129 ~~lG~~~f~~~Y~L~~~~~~dvP~wv~~ 156 (213)
++.|+++-++|++++.+ ...|+-+.+
T Consensus 7 L~aG~lvG~iy~ll~v~--sPAPP~iAl 32 (90)
T PF07235_consen 7 LGAGLLVGVIYSLLKVP--SPAPPVIAL 32 (90)
T ss_pred hhhhhHHHHHHHHhcCC--CCCCcHhHH
Confidence 56778888888888877 556666543
No 70
>TIGR00893 2A0114 d-galactonate transporter.
Probab=24.43 E-value=47 Score=27.10 Aligned_cols=80 Identities=15% Similarity=0.056 Sum_probs=40.5
Q ss_pred HHHHHHHhhHHHHhhh-hHHhhhhhhheeeeeeeccccccCchhHHHHHHHHHHHhhhhh---hhccccccCCCCCCCcc
Q 028112 112 IVTNRMISRIGFTVGI-PLLVGLLFFPFFYYLKVVLKIDVPSWLPVIVSFIFFGAALLGV---NYGIVSSSWDPLREGSL 187 (213)
Q Consensus 112 vVs~RMlrRia~f~Gi-P~~lG~~~f~~~Y~L~~~~~~dvP~wv~~lvS~~~FGlglLGI---SYGiLSASWDp~reGSl 187 (213)
.++||.-||..+..+. -..++...+.+. +++..+++..+++|+|.-++ .+.+++.-.++++.|..
T Consensus 51 ~l~d~~g~r~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~ 119 (399)
T TIGR00893 51 WLLDRFGARKTLAVFIVIWGVFTGLQAFA-----------GAYVSLYILRVLLGAAEAPFFPGIILIVASWFPASERATA 119 (399)
T ss_pred HHHHhcCcceeeHHHHHHHHHHHHHHHHH-----------cCHHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHH
Confidence 3567776665554443 333333322211 14445555555655553221 22233333445567888
Q ss_pred ccHHHhhhhHHHHHH
Q 028112 188 LGWNEAQRNWPVFWQ 202 (213)
Q Consensus 188 LG~eE~k~N~~~~w~ 202 (213)
.|+-..-.+++-+.-
T Consensus 120 ~~~~~~~~~~g~~~~ 134 (399)
T TIGR00893 120 VSIFNSAQGLGGIIG 134 (399)
T ss_pred HHHHHHhchHHHHHH
Confidence 888877777665543
No 71
>PF09972 DUF2207: Predicted membrane protein (DUF2207); InterPro: IPR018702 This domain has no known function.
Probab=23.99 E-value=77 Score=28.58 Aligned_cols=16 Identities=19% Similarity=0.332 Sum_probs=8.6
Q ss_pred HHHHhhhhHHhhhhhh
Q 028112 121 IGFTVGIPLLVGLLFF 136 (213)
Q Consensus 121 ia~f~GiP~~lG~~~f 136 (213)
+.++..+.++++++++
T Consensus 400 ~~~~~~i~~i~~~~~~ 415 (511)
T PF09972_consen 400 LIILGIILLILGFILL 415 (511)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4555555555555544
No 72
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=23.88 E-value=67 Score=26.17 Aligned_cols=26 Identities=31% Similarity=0.483 Sum_probs=15.2
Q ss_pred HHHHHhhHHHHhhhh-HHhhhhhhhee
Q 028112 114 TNRMISRIGFTVGIP-LLVGLLFFPFF 139 (213)
Q Consensus 114 s~RMlrRia~f~GiP-~~lG~~~f~~~ 139 (213)
..|.+.=+++..|+- .+.|++.++++
T Consensus 3 ~~~i~~i~~iilgilli~~gI~~Lv~~ 29 (191)
T PF04156_consen 3 KQRIISIILIILGILLIASGIAALVLF 29 (191)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666677777775 44455544443
No 73
>COG3716 ManZ Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID [Carbohydrate transport and metabolism]
Probab=23.81 E-value=48 Score=30.78 Aligned_cols=42 Identities=33% Similarity=0.610 Sum_probs=25.8
Q ss_pred hHHhhhhhhheeeeeeeccccccCchhHHHHHHHHHHHhhhhhhhccc
Q 028112 128 PLLVGLLFFPFFYYLKVVLKIDVPSWLPVIVSFIFFGAALLGVNYGIV 175 (213)
Q Consensus 128 P~~lG~~~f~~~Y~L~~~~~~dvP~wv~~lvS~~~FGlglLGISYGiL 175 (213)
|-++.+++..+.|||..+ .+ =|.|+ -+++|.+|++|---|+|
T Consensus 228 Pgllpl~~t~~~~wLl~K-kv-~p~~i----I~~~~vigIvg~~lGil 269 (269)
T COG3716 228 PGLLPLLLTLLMYWLLRK-KV-NPTWL----ILGTFVLGIVGSALGIL 269 (269)
T ss_pred hhHHHHHHHHHHHHHHcc-CC-chHHH----HHHHHHHHHHHHHhccC
Confidence 667777755555555543 22 24444 34678888888777765
No 74
>PF00689 Cation_ATPase_C: Cation transporting ATPase, C-terminus; InterPro: IPR006068 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the conserved C-terminal region found in several classes of cation-transporting P-type ATPases, including those that transport H+ (3.6.3.6 from EC), Na+ (3.6.3.7 from EC), Ca2+ (3.6.3.8 from EC), Na+/K+ (3.6.3.9 from EC), and H+/K+ (3.6.3.10 from EC). In the H+/K+- and Na+/K+-exchange P-ATPases, this domain is found in the catalytic alpha chain. More information about this protein can be found at Protein of the Month: ATP Synthases [].; PDB: 3A3Y_A 2ZXE_A 2XZB_A 3B9B_A 3N5K_A 3FPS_A 3B9R_A 1WPG_C 2AGV_A 2O9J_A ....
Probab=23.70 E-value=89 Score=24.68 Aligned_cols=18 Identities=11% Similarity=0.025 Sum_probs=10.4
Q ss_pred CCccccHHHhhhhHHHHH
Q 028112 184 EGSLLGWNEAQRNWPVFW 201 (213)
Q Consensus 184 eGSlLG~eE~k~N~~~~w 201 (213)
.++.+-+..+..|..-.+
T Consensus 113 ~~~~~~~~~~~~N~~l~~ 130 (182)
T PF00689_consen 113 RRSVFRFRGIFSNKWLLI 130 (182)
T ss_dssp SSTCTT-STGGGSHHHHH
T ss_pred cccceecccccccchHHH
Confidence 356666667778855443
No 75
>PRK12382 putative transporter; Provisional
Probab=23.39 E-value=1.7e+02 Score=25.28 Aligned_cols=86 Identities=13% Similarity=0.107 Sum_probs=43.1
Q ss_pred HHHHHHHhhHHHHhhh-hHHhhhhhhheeeeeeeccccccCchhHHHHHHHHHHHhhhhhhhc---cccccCCCCCCCcc
Q 028112 112 IVTNRMISRIGFTVGI-PLLVGLLFFPFFYYLKVVLKIDVPSWLPVIVSFIFFGAALLGVNYG---IVSSSWDPLREGSL 187 (213)
Q Consensus 112 vVs~RMlrRia~f~Gi-P~~lG~~~f~~~Y~L~~~~~~dvP~wv~~lvS~~~FGlglLGISYG---iLSASWDp~reGSl 187 (213)
..+||+=||-.+.+|. -.+++...+.+..++.. ...+++..+++.-++.|+|...+.-+ ......++++.|..
T Consensus 73 ~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~a 149 (392)
T PRK12382 73 RLADQYGAKRSALQGMLACGLAGLAYLLAAILPV---SAPFKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKHSGKV 149 (392)
T ss_pred HHHHhhcchHHHHHHHHHHHHHHHHHHhhhcccc---chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccchh
Confidence 4578887777666654 23333332222222111 12233444444445555544322211 22334567788999
Q ss_pred ccHHHhhhhHHHH
Q 028112 188 LGWNEAQRNWPVF 200 (213)
Q Consensus 188 LG~eE~k~N~~~~ 200 (213)
.|+-..-.+.+.+
T Consensus 150 ~~~~~~~~~~g~~ 162 (392)
T PRK12382 150 MSWNGMAMYGALA 162 (392)
T ss_pred hhHHHHHHHHHHH
Confidence 9987766665544
No 76
>PF06496 DUF1097: Protein of unknown function (DUF1097); InterPro: IPR009476 This family consists of several bacterial putative membrane proteins.
Probab=23.27 E-value=28 Score=28.07 Aligned_cols=22 Identities=23% Similarity=0.461 Sum_probs=16.7
Q ss_pred ccccccCchhHHHHHHHHHHHh
Q 028112 145 VLKIDVPSWLPVIVSFIFFGAA 166 (213)
Q Consensus 145 ~~~~dvP~wv~~lvS~~~FGlg 166 (213)
...+.+|.|+.|+.-..+|..|
T Consensus 15 a~~~~l~~W~~Figwa~yfa~G 36 (144)
T PF06496_consen 15 APALGLPGWAGFIGWASYFAAG 36 (144)
T ss_pred HHHcCchHHHHHHHHHHHHHcC
Confidence 3456788999999888887653
No 77
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms. These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.
Probab=23.27 E-value=2.2e+02 Score=23.31 Aligned_cols=49 Identities=10% Similarity=0.181 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHhh---hhhhhccccccCCCCCCCccccHHHhhhhHHHHHHH
Q 028112 155 PVIVSFIFFGAAL---LGVNYGIVSSSWDPLREGSLLGWNEAQRNWPVFWQS 203 (213)
Q Consensus 155 ~~lvS~~~FGlgl---LGISYGiLSASWDp~reGSlLG~eE~k~N~~~~w~s 203 (213)
.+++..++.|+|. ....+.+++...++++.+..+|+-..-.+++.+.-.
T Consensus 87 ~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~ 138 (352)
T PF07690_consen 87 LLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGP 138 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhccccccccccccccccccccccchhhhhhhccccccchhhhhhhccc
Confidence 4555555555543 334455566666666889999998888887766543
No 78
>PRK10473 multidrug efflux system protein MdtL; Provisional
Probab=23.26 E-value=98 Score=26.69 Aligned_cols=77 Identities=12% Similarity=0.098 Sum_probs=40.5
Q ss_pred HHHHHHHhhHHHHhhh-hHHhhhhhhheeeeeeeccccccCchhHHHHHHHHHHHhh---hhhhhccccccCCCCCCCcc
Q 028112 112 IVTNRMISRIGFTVGI-PLLVGLLFFPFFYYLKVVLKIDVPSWLPVIVSFIFFGAAL---LGVNYGIVSSSWDPLREGSL 187 (213)
Q Consensus 112 vVs~RMlrRia~f~Gi-P~~lG~~~f~~~Y~L~~~~~~dvP~wv~~lvS~~~FGlgl---LGISYGiLSASWDp~reGSl 187 (213)
.++||.=||..+..|. ..+++...+... ++...+++..++.|++. ..+.+.++...-++++.|..
T Consensus 60 ~l~Dr~g~r~~l~~~~~~~~i~~~~~~~~-----------~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~ 128 (392)
T PRK10473 60 KIADRSGRKPVAIPGAALFIIASLLCSLA-----------ETSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKV 128 (392)
T ss_pred HHHHHhCChHHHHHHHHHHHHHHHHHHHh-----------CcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHH
Confidence 4567777776655554 444444433211 22333333334444332 22455566555667777888
Q ss_pred ccHHHhhhhHHH
Q 028112 188 LGWNEAQRNWPV 199 (213)
Q Consensus 188 LG~eE~k~N~~~ 199 (213)
.|+-..-.+++.
T Consensus 129 ~~~~~~~~~i~~ 140 (392)
T PRK10473 129 LSLLNGITCIIP 140 (392)
T ss_pred HHHHHHHHHHHH
Confidence 887766555543
No 79
>COG0577 SalY ABC-type antimicrobial peptide transport system, permease component [Defense mechanisms]
Probab=23.13 E-value=1e+02 Score=25.52 Aligned_cols=67 Identities=13% Similarity=0.056 Sum_probs=37.3
Q ss_pred cccCCCcHHHHHHHHhhHHHHhhhhHHhhhhhhheeeeeee-----------ccccccCchhHHHHHHHHHHHhhhhh
Q 028112 104 AEAGVIPEIVTNRMISRIGFTVGIPLLVGLLFFPFFYYLKV-----------VLKIDVPSWLPVIVSFIFFGAALLGV 170 (213)
Q Consensus 104 ~~~~aIPevVs~RMlrRia~f~GiP~~lG~~~f~~~Y~L~~-----------~~~~dvP~wv~~lvS~~~FGlglLGI 170 (213)
++.++-+..+...++...++.+.+-.++|+.++.++.++.. .....++.....+..++.+.+++++-
T Consensus 323 ka~G~~~~~i~~~~~~e~~~~~~~g~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~ 400 (419)
T COG0577 323 KALGATRREILLQFLLEALILGLIGGLLGILLGLGLSLLLALLLIASLFFLLALPILLSPLLILLALIVALLVGVIAG 400 (419)
T ss_pred HhhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCHHHHHHHHHHHHHHHHHHH
Confidence 34555667777777777666666666666665533332221 22455555555555555555555554
No 80
>PF03169 OPT: OPT oligopeptide transporter protein; InterPro: IPR004813 The transporter OPT family are transporters of small oligopeptides, demonstrated experimentally in three different species of yeast. OPT1 is not a member of the ABC or PTR membrane transport families [].; GO: 0055085 transmembrane transport
Probab=23.10 E-value=1.4e+02 Score=29.21 Aligned_cols=30 Identities=17% Similarity=0.256 Sum_probs=17.4
Q ss_pred cccCchhHHHHHHH-HHHHhhhhhhhccccc
Q 028112 148 IDVPSWLPVIVSFI-FFGAALLGVNYGIVSS 177 (213)
Q Consensus 148 ~dvP~wv~~lvS~~-~FGlglLGISYGiLSA 177 (213)
.++|.|..++.-++ ++..=..|+.+|.-..
T Consensus 381 ~~~p~~~~ilai~la~v~~~~~~~~~g~t~~ 411 (624)
T PF03169_consen 381 TQMPWWGLILAILLAFVFSIPSGRITGETGI 411 (624)
T ss_pred cCCchhhhHHHHHHHHHHHHHHHHHhhhcCC
Confidence 57888877666543 3333455666665444
No 81
>PRK03633 putative MFS family transporter protein; Provisional
Probab=22.90 E-value=1.4e+02 Score=25.84 Aligned_cols=80 Identities=10% Similarity=-0.023 Sum_probs=44.4
Q ss_pred HHHHHHhhHHHHhhh-hHHhhhhhhheeeeeeeccccccCchhHHHHHHHHHHHhhhhhh---hccccccCCCCCCCccc
Q 028112 113 VTNRMISRIGFTVGI-PLLVGLLFFPFFYYLKVVLKIDVPSWLPVIVSFIFFGAALLGVN---YGIVSSSWDPLREGSLL 188 (213)
Q Consensus 113 Vs~RMlrRia~f~Gi-P~~lG~~~f~~~Y~L~~~~~~dvP~wv~~lvS~~~FGlglLGIS---YGiLSASWDp~reGSlL 188 (213)
.+||.-||..+..|+ -.++|...+.. .+++..+++..++.|+|.-++. -.++...+.+++.|..+
T Consensus 64 l~dr~g~k~~~~~~~~~~~~~~~~~~~-----------~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (381)
T PRK03633 64 VIKRIGFNRSYYLASLIFAAGCAGLGL-----------MVGFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLL 132 (381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-----------hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 567776655555443 33333332221 2345555556666666543321 23455667777788888
Q ss_pred cHHHhhhhHHHHHHH
Q 028112 189 GWNEAQRNWPVFWQS 203 (213)
Q Consensus 189 G~eE~k~N~~~~w~s 203 (213)
|+-.+--|++-..-.
T Consensus 133 ~~~~~~~~~g~~~g~ 147 (381)
T PRK03633 133 AAYMMVYYLGTVLGQ 147 (381)
T ss_pred HHHHHHHHHHHHHHH
Confidence 887777776655433
No 82
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=22.84 E-value=1.7e+02 Score=25.75 Aligned_cols=47 Identities=17% Similarity=0.303 Sum_probs=33.1
Q ss_pred cccCchhHHHHHHHHHHHhhhhhhhccccccCCCCCCCccccHHHhhhhHHHH
Q 028112 148 IDVPSWLPVIVSFIFFGAALLGVNYGIVSSSWDPLREGSLLGWNEAQRNWPVF 200 (213)
Q Consensus 148 ~dvP~wv~~lvS~~~FGlglLGISYGiLSASWDp~reGSlLG~eE~k~N~~~~ 200 (213)
++.|.|..+++. +++|+.++-|.=.++|+-|-... .+.++..-++|+
T Consensus 41 ~~~~~~~ai~~g-lvwgl~I~~lDR~ivss~~~~~~-----~~~~~~~~~~R~ 87 (301)
T PF14362_consen 41 FGGPVWAAIPFG-LVWGLVIFNLDRFIVSSIRKSDG-----SRKRLLQALPRL 87 (301)
T ss_pred hccchHHHHHHH-HHHHHHHHHHHHHHHhccccccc-----hHHHHHHHHHHH
Confidence 455556666666 88899999999999999887642 455555555554
No 83
>PF03616 Glt_symporter: Sodium/glutamate symporter; InterPro: IPR004445 This is a family of sodium/glutamate symporters (glutamate permeases), which catalyse the sodium-dependent uptake of extracellular glutamate. The protein is located in the inner membrane.; GO: 0015501 glutamate:sodium symporter activity, 0015813 L-glutamate transport, 0016021 integral to membrane
Probab=22.60 E-value=1.3e+02 Score=28.18 Aligned_cols=32 Identities=16% Similarity=0.333 Sum_probs=18.6
Q ss_pred HHhhhhHHhhhhhhheeeeeeeccccccCchhHHHH
Q 028112 123 FTVGIPLLVGLLFFPFFYYLKVVLKIDVPSWLPVIV 158 (213)
Q Consensus 123 ~f~GiP~~lG~~~f~~~Y~L~~~~~~dvP~wv~~lv 158 (213)
..+++.+++|.. ++.++.. ..+.+|.++.-..
T Consensus 224 ~~i~i~~~~G~~---i~~~l~~-~~~~lP~f~~ami 255 (368)
T PF03616_consen 224 ALILIAIGLGYI---ISALLKK-IGLTLPLFVGAMI 255 (368)
T ss_pred HHHHHHHHHHHH---HHHHHHH-cCcCCchHHHHHH
Confidence 456666776654 3334444 5678888755443
No 84
>PRK10714 undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional
Probab=22.47 E-value=98 Score=27.73 Aligned_cols=9 Identities=0% Similarity=-0.001 Sum_probs=4.2
Q ss_pred cCchhHHHH
Q 028112 150 VPSWLPVIV 158 (213)
Q Consensus 150 vP~wv~~lv 158 (213)
++-|..+++
T Consensus 265 ~~g~~~~~~ 273 (325)
T PRK10714 265 AEGVFMLFA 273 (325)
T ss_pred CCCcHHHHH
Confidence 445654433
No 85
>COG2991 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.47 E-value=63 Score=25.10 Aligned_cols=34 Identities=21% Similarity=0.304 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHhhhhhhhccccccCCCCCCCccccH
Q 028112 155 PVIVSFIFFGAALLGVNYGIVSSSWDPLREGSLLGW 190 (213)
Q Consensus 155 ~~lvS~~~FGlglLGISYGiLSASWDp~reGSlLG~ 190 (213)
+++.++++|.+-++|.|.|+.-..=- -.||-=|+
T Consensus 3 t~lltFg~Fllvi~gMsiG~I~krk~--I~GSCGGi 36 (77)
T COG2991 3 TFLLTFGIFLLVIAGMSIGYIFKRKS--IKGSCGGI 36 (77)
T ss_pred cHHHHHHHHHHHHHHHhHhhheeccc--cccccccH
Confidence 57889999999999999998754322 24665444
No 86
>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator).
Probab=22.26 E-value=1.8e+02 Score=24.29 Aligned_cols=79 Identities=16% Similarity=0.138 Sum_probs=40.2
Q ss_pred HHHHHHHhhHHHHhhh-hHHhhhhhhheeeeeeeccccccC-chhHHHHHHHHHHHhh--hhhhhccccccCCCCCCCcc
Q 028112 112 IVTNRMISRIGFTVGI-PLLVGLLFFPFFYYLKVVLKIDVP-SWLPVIVSFIFFGAAL--LGVNYGIVSSSWDPLREGSL 187 (213)
Q Consensus 112 vVs~RMlrRia~f~Gi-P~~lG~~~f~~~Y~L~~~~~~dvP-~wv~~lvS~~~FGlgl--LGISYGiLSASWDp~reGSl 187 (213)
.++||+=||-.+..+. -.+++...+... + ++..+++..++.|++- .......++.-.++++.|..
T Consensus 59 ~l~dr~g~r~~~~~~~~~~~i~~~~~~~~-----------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~r~~~ 127 (366)
T TIGR00886 59 FLVDKFGPRYTTTLSLLLLAIPCLWAGLA-----------VQSYSVLLLLRLFIGIAGGSFASCMPWISFFFPKKIQGTA 127 (366)
T ss_pred HHHHHhCchHHHHHHHHHHHHHHHHHHHH-----------hhhHHHHHHHHHHHHHhchhhHhHHHHHHHhcCHhhhhHH
Confidence 4677887765555443 444444332211 1 3444444555554432 22233334333445567888
Q ss_pred ccHHHhhhhHHHHH
Q 028112 188 LGWNEAQRNWPVFW 201 (213)
Q Consensus 188 LG~eE~k~N~~~~w 201 (213)
.|+-..-.|.+...
T Consensus 128 ~~~~~~~~~~g~~~ 141 (366)
T TIGR00886 128 LGLAAGWGNMGGGV 141 (366)
T ss_pred HHHHHHHhHHHHHH
Confidence 88877655655543
No 87
>PF08941 USP8_interact: USP8 interacting; InterPro: IPR015036 This protein interacts with the UBP deubiquitinating enzyme USP8. ; GO: 0016881 acid-amino acid ligase activity, 0031386 protein tag, 0016567 protein ubiquitination; PDB: 2FZP_A 2GWF_B 2OGB_A.
Probab=22.11 E-value=58 Score=28.68 Aligned_cols=22 Identities=32% Similarity=0.407 Sum_probs=16.7
Q ss_pred CcHHHHHHHHhhHHHHhhhhHH
Q 028112 109 IPEIVTNRMISRIGFTVGIPLL 130 (213)
Q Consensus 109 IPevVs~RMlrRia~f~GiP~~ 130 (213)
-|+.|.+.|+||-+..+|-|+-
T Consensus 84 TPD~~Lq~~ir~~L~~sgCP~h 105 (179)
T PF08941_consen 84 TPDSVLQAMIRRSLSESGCPMH 105 (179)
T ss_dssp S--HHHHHHHHHHHHHTT--CC
T ss_pred CccHHHHHHHHHHHHhcCCCHH
Confidence 7999999999999999999863
No 88
>PF10823 DUF2568: Protein of unknown function (DUF2568); InterPro: IPR021214 One member in this family is annotated as yrdB which is part of a four gene operon however currently no function is known.
Probab=21.59 E-value=1.4e+02 Score=23.09 Aligned_cols=51 Identities=20% Similarity=0.324 Sum_probs=39.2
Q ss_pred HHhhHHHHhhhhHHhhhhhhheeeeeeeccccccCchhHHHHHHHHHHHhhhhh
Q 028112 117 MISRIGFTVGIPLLVGLLFFPFFYYLKVVLKIDVPSWLPVIVSFIFFGAALLGV 170 (213)
Q Consensus 117 MlrRia~f~GiP~~lG~~~f~~~Y~L~~~~~~dvP~wv~~lvS~~~FGlglLGI 170 (213)
+.-|+++..|+|.+.++. -..|..-+....+|...-+++-.+.|++|.+++
T Consensus 25 ~~~~~~l~i~~p~~~a~~---Wg~f~APka~~rl~~~~rl~le~~vF~~~~~al 75 (93)
T PF10823_consen 25 WWWKILLAIGLPLLAAVL---WGLFGAPKAPRRLPGPARLLLELAVFGLAAAAL 75 (93)
T ss_pred hHHHHHHHHHHHHHHHHH---HHHHcCCCCcccCccHHHHHHHHHHHHHHHHHH
Confidence 456888888889776654 344456667788999999999999999988764
No 89
>TIGR00901 2A0125 AmpG-related permease.
Probab=21.51 E-value=1.6e+02 Score=24.88 Aligned_cols=30 Identities=7% Similarity=-0.108 Sum_probs=20.6
Q ss_pred hhhhhhccccccCCCCCCCccccHHHhhhh
Q 028112 167 LLGVNYGIVSSSWDPLREGSLLGWNEAQRN 196 (213)
Q Consensus 167 lLGISYGiLSASWDp~reGSlLG~eE~k~N 196 (213)
..+.....++-.=+++..|+..|+-..-.|
T Consensus 326 ~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~ 355 (356)
T TIGR00901 326 GTVAFVAFLSKLSNPKFGATQMALLSSLSA 355 (356)
T ss_pred HHHHHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence 344455556666688899999998766554
No 90
>TIGR00879 SP MFS transporter, sugar porter (SP) family. This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)
Probab=21.44 E-value=2.1e+02 Score=24.23 Aligned_cols=85 Identities=11% Similarity=0.046 Sum_probs=44.2
Q ss_pred HHHHHHHhhHHHHhhh-hHHhhhhhhheeeeeeeccccccCchhHHHHHHHHHHHhhhh---hhhccccccCCCCCCCcc
Q 028112 112 IVTNRMISRIGFTVGI-PLLVGLLFFPFFYYLKVVLKIDVPSWLPVIVSFIFFGAALLG---VNYGIVSSSWDPLREGSL 187 (213)
Q Consensus 112 vVs~RMlrRia~f~Gi-P~~lG~~~f~~~Y~L~~~~~~dvP~wv~~lvS~~~FGlglLG---ISYGiLSASWDp~reGSl 187 (213)
..+||+=||..+..+. -.++|...+.+. . ....+..+++..++.|+|.-+ +.+.+++.-+++++.|..
T Consensus 93 ~l~d~~grr~~~~~~~~~~~~~~~~~~~~---~-----~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~ 164 (481)
T TIGR00879 93 WLSDRFGRKKSLLIIALLFVIGAILMGLA---A-----FALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGAL 164 (481)
T ss_pred HhhhhhhhHHHHHHHHHHHHHHHHHHHHh---c-----cccchHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhhhhhh
Confidence 3567777776655544 333343333211 0 011122344455555554322 234445555666778888
Q ss_pred ccHHHhhhhHHHHHHHH
Q 028112 188 LGWNEAQRNWPVFWQSL 204 (213)
Q Consensus 188 LG~eE~k~N~~~~w~s~ 204 (213)
.|+-.+-.+++-+.-.+
T Consensus 165 ~~~~~~~~~~G~~~~~~ 181 (481)
T TIGR00879 165 TSLYQLAITFGILVAYG 181 (481)
T ss_pred hhHHHHHHHHHHHHHHH
Confidence 88887777776655443
No 91
>TIGR03062 pip_yhgE_Cterm YhgE/Pip C-terminal domain. This family contains the C-terminal domain of a family of multiple membrane-spanning proteins of Gram-positive bacteria. One member was shown to be a host protein essential for phage infection, so many members of this family are called "phage infection protein". A separate model, TIGR03061, represents the conserved N-terminal domain. The domains are separated by regions highly variable in both length and sequence, often containing extended heptad repeats as described in model TIGR03057.
Probab=21.23 E-value=2.2e+02 Score=22.95 Aligned_cols=28 Identities=7% Similarity=0.071 Sum_probs=15.0
Q ss_pred HHHHHhhHHHHhhhhHHhhhhhhheeee
Q 028112 114 TNRMISRIGFTVGIPLLVGLLFFPFFYY 141 (213)
Q Consensus 114 s~RMlrRia~f~GiP~~lG~~~f~~~Y~ 141 (213)
.+.++.+++....+=++.++.++.+.|+
T Consensus 60 ~~~~~~k~~~~~~~~~~~~~~~~~i~~~ 87 (208)
T TIGR03062 60 WRIALAKLLPGGLIGVLQAIILYGVLIL 87 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446666665555545555555555554
No 92
>TIGR00880 2_A_01_02 Multidrug resistance protein.
Probab=21.14 E-value=1.8e+02 Score=19.89 Aligned_cols=30 Identities=17% Similarity=0.250 Sum_probs=18.3
Q ss_pred hhccccccCCCCCCCccccHHHhhhhHHHH
Q 028112 171 NYGIVSSSWDPLREGSLLGWNEAQRNWPVF 200 (213)
Q Consensus 171 SYGiLSASWDp~reGSlLG~eE~k~N~~~~ 200 (213)
.+..++..-++++.|...|+-..-.+++..
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 101 (141)
T TIGR00880 72 GAALIADIYPPEERGVALGLMSAGIALGPL 101 (141)
T ss_pred HHHHHHHHCChhhhhHHHHHHHHhHHHHHH
Confidence 334444455666678888877766665543
No 93
>TIGR00895 2A0115 benzoate transport.
Probab=20.79 E-value=2.3e+02 Score=23.55 Aligned_cols=80 Identities=14% Similarity=0.023 Sum_probs=38.8
Q ss_pred HHHHHHHhhHHHHhhh-hHHhhhhhhheeeeeeeccccccCchhHHHHHHHHHHHhhhh---hhhccccccCCCCCCCcc
Q 028112 112 IVTNRMISRIGFTVGI-PLLVGLLFFPFFYYLKVVLKIDVPSWLPVIVSFIFFGAALLG---VNYGIVSSSWDPLREGSL 187 (213)
Q Consensus 112 vVs~RMlrRia~f~Gi-P~~lG~~~f~~~Y~L~~~~~~dvP~wv~~lvS~~~FGlglLG---ISYGiLSASWDp~reGSl 187 (213)
.++||+-||..+..|. -.+++...+.+ .+.+..+++..++.|++.-+ ..+..++.-.++++.|..
T Consensus 74 ~l~d~~g~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~ 142 (398)
T TIGR00895 74 PLADRIGRKRVLLWSILLFSVFTLLCAL-----------ATNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTA 142 (398)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHH-----------ccchHHHHHHHHHHhcccccchhhHHHHHHHHcCHHhhchh
Confidence 3567777776666554 33333332221 12333344444444433211 122222233344567888
Q ss_pred ccHHHhhhhHHHHHH
Q 028112 188 LGWNEAQRNWPVFWQ 202 (213)
Q Consensus 188 LG~eE~k~N~~~~w~ 202 (213)
.|+-.+-.+++.+.-
T Consensus 143 ~~~~~~~~~~g~~~~ 157 (398)
T TIGR00895 143 VGLMFCGYPIGAAVG 157 (398)
T ss_pred HhhHhhHHHHHHHHH
Confidence 888777776665443
No 94
>PRK05415 hypothetical protein; Provisional
Probab=20.59 E-value=1.3e+02 Score=28.64 Aligned_cols=24 Identities=17% Similarity=0.253 Sum_probs=13.5
Q ss_pred cccCchhHHHHHHHHHHHhhhhhh
Q 028112 148 IDVPSWLPVIVSFIFFGAALLGVN 171 (213)
Q Consensus 148 ~dvP~wv~~lvS~~~FGlglLGIS 171 (213)
+.--+|+.++.+.++..+.++|+.
T Consensus 93 ~~~~~wlg~~~~~~~~~~~~~~~~ 116 (341)
T PRK05415 93 FQRSDWLGLGAAVVGALIVLAGLG 116 (341)
T ss_pred HHhCcHHHHHHHHHHHHHHHHHHH
Confidence 444567777666555555555443
No 95
>TIGR00891 2A0112 putative sialic acid transporter.
Probab=20.43 E-value=1.5e+02 Score=24.94 Aligned_cols=36 Identities=11% Similarity=0.057 Sum_probs=22.3
Q ss_pred hhhhhhhccccccCCCCCCCccccHHHhhhhHHHHH
Q 028112 166 ALLGVNYGIVSSSWDPLREGSLLGWNEAQRNWPVFW 201 (213)
Q Consensus 166 glLGISYGiLSASWDp~reGSlLG~eE~k~N~~~~w 201 (213)
+..++....++..=+++..|...|+...-.|++.+.
T Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~ 379 (405)
T TIGR00891 344 GIWGILPKHLGEYFPTDQRAAGLGFTYQLGNLGGAL 379 (405)
T ss_pred cchhhHHHHHhhhCCcchhHHHhhHHHHHHHHHHHH
Confidence 333444445554446667799999877766666543
No 96
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3
Probab=20.39 E-value=2e+02 Score=23.19 Aligned_cols=79 Identities=20% Similarity=0.290 Sum_probs=40.0
Q ss_pred HHHHHHHhhHHHHhhh-hHHhhhhhhheeeeeeeccccccCchhHHHHHHHHHHHhh--hhhhhccccccCCC-CCCCcc
Q 028112 112 IVTNRMISRIGFTVGI-PLLVGLLFFPFFYYLKVVLKIDVPSWLPVIVSFIFFGAAL--LGVNYGIVSSSWDP-LREGSL 187 (213)
Q Consensus 112 vVs~RMlrRia~f~Gi-P~~lG~~~f~~~Y~L~~~~~~dvP~wv~~lvS~~~FGlgl--LGISYGiLSASWDp-~reGSl 187 (213)
.++||.=||..+..+. -.+++...+... +.+..+++..++.|++. ....+..+-+.|-+ ++.|..
T Consensus 56 ~~~d~~g~r~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (352)
T cd06174 56 YLSDRFGRRRVLLLGLLLFALGSLLLAFA-----------SSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRA 124 (352)
T ss_pred HHHHHhCCchhhHHHHHHHHHHHHHHHHh-----------ccHHHHHHHHHHHHcccccccHhHHHHHHHhCCccchhhh
Confidence 3567776665544443 334444333222 34444454444444322 22222233334444 477999
Q ss_pred ccHHHhhhhHHHHH
Q 028112 188 LGWNEAQRNWPVFW 201 (213)
Q Consensus 188 LG~eE~k~N~~~~w 201 (213)
.|+...-.+++.+.
T Consensus 125 ~~~~~~~~~~g~~~ 138 (352)
T cd06174 125 LGLFSAGFGLGALL 138 (352)
T ss_pred hhHHHHHHHHHHHH
Confidence 99888777766544
No 97
>COG2733 Predicted membrane protein [Function unknown]
Probab=20.24 E-value=88 Score=30.72 Aligned_cols=40 Identities=13% Similarity=0.199 Sum_probs=32.2
Q ss_pred HHHHhhHHHHhhhhHHhhhhhhheeeeeeeccccccCchhHHHHHH
Q 028112 115 NRMISRIGFTVGIPLLVGLLFFPFFYYLKVVLKIDVPSWLPVIVSF 160 (213)
Q Consensus 115 ~RMlrRia~f~GiP~~lG~~~f~~~Y~L~~~~~~dvP~wv~~lvS~ 160 (213)
-+|+||+=+..+.-+++-.++|++.|++..+ .|+-++.++
T Consensus 4 l~~lrr~K~iA~~lL~i~~~~f~l~~~~~nn------~w~g~v~a~ 43 (415)
T COG2733 4 LNELRRAKVIATGLLLIAAGVFILCRFFENN------AWVGFVGAI 43 (415)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHhccc------HHHHHHHHH
Confidence 3678888888888888888999999999877 677666554
No 98
>PRK03893 putative sialic acid transporter; Provisional
Probab=20.18 E-value=93 Score=27.70 Aligned_cols=79 Identities=18% Similarity=0.260 Sum_probs=43.3
Q ss_pred HHHHHHHhhHHHHhhh-hHHhhhhhhheeeeeeeccccccCchhHHHHHHHHHHHh---hhhhhhccccccCCCCCCCcc
Q 028112 112 IVTNRMISRIGFTVGI-PLLVGLLFFPFFYYLKVVLKIDVPSWLPVIVSFIFFGAA---LLGVNYGIVSSSWDPLREGSL 187 (213)
Q Consensus 112 vVs~RMlrRia~f~Gi-P~~lG~~~f~~~Y~L~~~~~~dvP~wv~~lvS~~~FGlg---lLGISYGiLSASWDp~reGSl 187 (213)
.++||+-||..+..+. -.++|...+.+. +++..+++..++.|++ .....+.++.-.|++++.|..
T Consensus 77 ~l~dr~g~r~~~~~~~~~~~~~~~~~~~~-----------~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~ 145 (496)
T PRK03893 77 AMGDRYGRRLAMVISIVLFSVGTLACGFA-----------PGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKA 145 (496)
T ss_pred HHHHHhCcHHHHHHHHHHHHHHHHHHHHH-----------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHH
Confidence 4567887776665554 334444333321 2233344444444443 234455667777777767777
Q ss_pred ccHHHhhhhHHHHH
Q 028112 188 LGWNEAQRNWPVFW 201 (213)
Q Consensus 188 LG~eE~k~N~~~~w 201 (213)
.|+-..-.+++.+.
T Consensus 146 ~~~~~~~~~~g~~~ 159 (496)
T PRK03893 146 SGFLISGFSIGAVV 159 (496)
T ss_pred HHHHHHHHHHHHHH
Confidence 77777666665543
Done!