Query 028112
Match_columns 213
No_of_seqs 91 out of 93
Neff 2.9
Searched_HMMs 29240
Date Mon Mar 25 10:11:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028112.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028112hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2f93_B Sensory rhodopsin II tr 66.3 0.93 3.2E-05 36.0 -0.7 65 109-173 9-82 (122)
2 1vf5_F Protein PET M; photosyn 42.6 14 0.00047 23.9 2.0 22 156-177 6-27 (35)
3 1q90_M Cytochrome B6F complex 40.9 15 0.0005 24.3 2.0 21 156-176 7-27 (39)
4 3tj3_C Nuclear pore complex pr 36.8 16 0.00053 29.0 1.9 22 98-119 25-46 (114)
5 3k6g_D Telomeric repeat-bindin 33.5 4.3 0.00015 27.3 -1.5 22 161-182 7-28 (42)
6 3o7q_A L-fucose-proton symport 32.6 94 0.0032 25.1 6.0 85 112-204 83-171 (438)
7 4aps_A DI-OR tripeptide H+ sym 27.9 84 0.0029 26.1 5.0 92 113-204 342-440 (491)
8 3arc_J Photosystem II reaction 26.0 41 0.0014 22.3 2.2 23 148-171 6-28 (40)
9 1pw4_A Glycerol-3-phosphate tr 24.4 60 0.0021 26.3 3.4 31 172-202 368-399 (451)
10 1rh5_C Secbeta; protein transl 22.5 58 0.002 22.2 2.6 45 126-175 8-52 (53)
11 1tvs_A Transactivator protein; 22.3 26 0.0009 26.0 0.8 13 160-173 38-50 (75)
12 1oef_A Apolipoprotein E; glyco 21.1 58 0.002 18.8 2.0 17 190-206 7-23 (26)
No 1
>2f93_B Sensory rhodopsin II transducer; menbrane protein complex, signal transduction, photocycle ST membrane protein; HET: BOG RET; 2.00A {Natronomonas pharaonis} SCOP: f.17.4.1
Probab=66.26 E-value=0.93 Score=36.02 Aligned_cols=65 Identities=14% Similarity=0.139 Sum_probs=31.9
Q ss_pred CcHHHHHHHHhhHHHHhhhhHHhhhhhhheeeeeeecc---------ccccCchhHHHHHHHHHHHhhhhhhhc
Q 028112 109 IPEIVTNRMISRIGFTVGIPLLVGLLFFPFFYYLKVVL---------KIDVPSWLPVIVSFIFFGAALLGVNYG 173 (213)
Q Consensus 109 IPevVs~RMlrRia~f~GiP~~lG~~~f~~~Y~L~~~~---------~~dvP~wv~~lvS~~~FGlglLGISYG 173 (213)
.|+.|.++-=+||+.+.+.-+.+-+++-+++|+-.... .-++-.|+..++.+++.++|++|+-.|
T Consensus 9 ~~~~v~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~q~~seA~A~~~~V~~~liil~~v~lv~LgvvG~~lG 82 (122)
T 2f93_B 9 LPSRVRHSYTGKMGAVFIFVGALTVLFGAIAYGEVTAAAATGDAAAVQEAAVSAILGLIILLGINLGLVAATLG 82 (122)
T ss_dssp -------------------CHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred hhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 57788999999999999988888888888888865542 134456888888888888999998755
No 2
>1vf5_F Protein PET M; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: f.23.25.1 PDB: 2d2c_F* 2e74_F* 2e75_F* 2e76_F* 2zt9_F*
Probab=42.55 E-value=14 Score=23.88 Aligned_cols=22 Identities=18% Similarity=0.477 Sum_probs=18.1
Q ss_pred HHHHHHHHHHhhhhhhhccccc
Q 028112 156 VIVSFIFFGAALLGVNYGIVSS 177 (213)
Q Consensus 156 ~lvS~~~FGlglLGISYGiLSA 177 (213)
+-++.++|++-++|++.|++.-
T Consensus 6 f~~A~i~~~LvLvGla~Gf~LL 27 (35)
T 1vf5_F 6 LYAALLSFGLIFVGWGLGVLLL 27 (35)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 4567889999999999998754
No 3
>1q90_M Cytochrome B6F complex subunit PETM; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.25.1
Probab=40.91 E-value=15 Score=24.25 Aligned_cols=21 Identities=24% Similarity=0.452 Sum_probs=17.6
Q ss_pred HHHHHHHHHHhhhhhhhcccc
Q 028112 156 VIVSFIFFGAALLGVNYGIVS 176 (213)
Q Consensus 156 ~lvS~~~FGlglLGISYGiLS 176 (213)
+-++.++|++-++|++.|++.
T Consensus 7 f~~A~i~~~L~LvGla~Gf~L 27 (39)
T 1q90_M 7 AGTALTMVGMTLVGLAIGFVL 27 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 456789999999999999874
No 4
>3tj3_C Nuclear pore complex protein NUP50; armadillo repeat, nuclear import adaptor, NLS-bearing protei nucleo-cytoplasmic shuttling, protein transport; 2.70A {Homo sapiens}
Probab=36.84 E-value=16 Score=28.99 Aligned_cols=22 Identities=23% Similarity=0.220 Sum_probs=14.5
Q ss_pred cccccccccCCCcHHHHHHHHh
Q 028112 98 DEEGDEAEAGVIPEIVTNRMIS 119 (213)
Q Consensus 98 ~~e~~~~~~~aIPevVs~RMlr 119 (213)
|+|+...-..|=.+|+.+|-|+
T Consensus 25 d~ee~GtF~~AS~eVLs~RkIk 46 (114)
T 3tj3_C 25 EAEEVGTFSMASEEVLKNRAIK 46 (114)
T ss_dssp CCCCCCCCCBCCHHHHHHSCCC
T ss_pred cccccCCcccCCHHHHhccccc
Confidence 3334444456788999999773
No 5
>3k6g_D Telomeric repeat-binding factor 2; helix, chromosomal protein, nucleus, phosphoprotein, telomer cycle, DNA-binding, protein binding; 1.95A {Homo sapiens}
Probab=33.52 E-value=4.3 Score=27.31 Aligned_cols=22 Identities=18% Similarity=0.203 Sum_probs=18.8
Q ss_pred HHHHHhhhhhhhccccccCCCC
Q 028112 161 IFFGAALLGVNYGIVSSSWDPL 182 (213)
Q Consensus 161 ~~FGlglLGISYGiLSASWDp~ 182 (213)
-+||+..|--++-.||.|||++
T Consensus 7 tT~Gi~tLk~AFK~Ls~sqD~e 28 (42)
T 3k6g_D 7 TTIGMMTLKAAFKTLSGAQDSE 28 (42)
T ss_dssp -CCCHHHHHHHHHHHHCCTTHH
T ss_pred ceeeHHHHHHHHHHhccCCCcH
Confidence 4678889999999999999985
No 6
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=32.56 E-value=94 Score=25.10 Aligned_cols=85 Identities=12% Similarity=0.137 Sum_probs=48.3
Q ss_pred HHHHHHHhhHHHHhhh-hHHhhhhhhheeeeeeeccccccCchhHHHHHHHHHHHhhhh---hhhccccccCCCCCCCcc
Q 028112 112 IVTNRMISRIGFTVGI-PLLVGLLFFPFFYYLKVVLKIDVPSWLPVIVSFIFFGAALLG---VNYGIVSSSWDPLREGSL 187 (213)
Q Consensus 112 vVs~RMlrRia~f~Gi-P~~lG~~~f~~~Y~L~~~~~~dvP~wv~~lvS~~~FGlglLG---ISYGiLSASWDp~reGSl 187 (213)
.++||.=||..+..|. -+++|...+... .-.+++..+++..++.|+|.-+ ..+..++...++++.|..
T Consensus 83 ~l~dr~g~r~~l~~~~~~~~~~~~~~~~~--------~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~ 154 (438)
T 3o7q_A 83 ILMKKLSYKAGIITGLFLYALGAALFWPA--------AEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFR 154 (438)
T ss_dssp HHHHHSCHHHHHHHHHHHHHHHHHHHHHH--------HHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHH
T ss_pred HHHHHhcchHHHHHHHHHHHHHHHHHHhc--------cccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHH
Confidence 3567776666555544 444444433110 1134455566666666554422 334445555576777888
Q ss_pred ccHHHhhhhHHHHHHHH
Q 028112 188 LGWNEAQRNWPVFWQSL 204 (213)
Q Consensus 188 LG~eE~k~N~~~~w~s~ 204 (213)
+|+-..-.+++.+.-..
T Consensus 155 ~~~~~~~~~~g~~~g~~ 171 (438)
T 3o7q_A 155 LNLAQTFNSFGAIIAVV 171 (438)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99998888887765543
No 7
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=27.92 E-value=84 Score=26.11 Aligned_cols=92 Identities=8% Similarity=-0.135 Sum_probs=0.0
Q ss_pred HHHHHHhh----HHHHhhhhHHhhhhhhheeeeeeeccccccCchhHHHHHHHHHHHhhhh---hhhccccccCCCCCCC
Q 028112 113 VTNRMISR----IGFTVGIPLLVGLLFFPFFYYLKVVLKIDVPSWLPVIVSFIFFGAALLG---VNYGIVSSSWDPLREG 185 (213)
Q Consensus 113 Vs~RMlrR----ia~f~GiP~~lG~~~f~~~Y~L~~~~~~dvP~wv~~lvS~~~FGlglLG---ISYGiLSASWDp~reG 185 (213)
+.+|+-|| .......-.+.+++++.+.+.......-.-.++..+++.++++|+|... ..+.+.+..-.++..|
T Consensus 342 l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g 421 (491)
T 4aps_A 342 LWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNS 421 (491)
T ss_dssp HHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCCCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSS
T ss_pred HHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHH
Q ss_pred ccccHHHhhhhHHHHHHHH
Q 028112 186 SLLGWNEAQRNWPVFWQSL 204 (213)
Q Consensus 186 SlLG~eE~k~N~~~~w~s~ 204 (213)
...|+-.+-.+++...-..
T Consensus 422 ~~~g~~~~~~~~g~~i~~~ 440 (491)
T 4aps_A 422 QMMSMWFLSSSVGSALNAQ 440 (491)
T ss_dssp SSTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
No 8
>3arc_J Photosystem II reaction center protein J; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_J* 3a0b_J* 3a0h_J* 2axt_J* 3bz1_J* 3bz2_J* 3kzi_J* 3prq_J* 3prr_J*
Probab=25.98 E-value=41 Score=22.33 Aligned_cols=23 Identities=17% Similarity=0.303 Sum_probs=15.9
Q ss_pred cccCchhHHHHHHHHHHHhhhhhh
Q 028112 148 IDVPSWLPVIVSFIFFGAALLGVN 171 (213)
Q Consensus 148 ~dvP~wv~~lvS~~~FGlglLGIS 171 (213)
-.||.|++-.+. ++..+|++||-
T Consensus 6 GRiPLWlvgtv~-G~~vi~~~giF 28 (40)
T 3arc_J 6 GRIPLWIVATVA-GMGVIVIVGLF 28 (40)
T ss_dssp TSSCHHHHHHHH-HHHHHHHHHHH
T ss_pred CcccEEeeeeeh-hhhhhheeeEE
Confidence 368999866554 45567888873
No 9
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=24.42 E-value=60 Score=26.30 Aligned_cols=31 Identities=6% Similarity=-0.208 Sum_probs=23.4
Q ss_pred hccccccCCCCCCCccccHHHhhhhH-HHHHH
Q 028112 172 YGIVSSSWDPLREGSLLGWNEAQRNW-PVFWQ 202 (213)
Q Consensus 172 YGiLSASWDp~reGSlLG~eE~k~N~-~~~w~ 202 (213)
+.+++..-+++..|+..|+-.+-.|+ +.+.-
T Consensus 368 ~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~ 399 (451)
T 1pw4_A 368 GLHALELAPKKAAGTAAGFTGLFGYLGGSVAA 399 (451)
T ss_dssp HHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhchhhhhhHHHHHHHHHHHHHHHHH
Confidence 45666677777789999999888888 66543
No 10
>1rh5_C Secbeta; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} SCOP: f.23.29.1 PDB: 1rhz_C 2yxq_C 2yxr_C 3kcr_C 3dkn_C 3bo1_C 3bo0_C
Probab=22.50 E-value=58 Score=22.24 Aligned_cols=45 Identities=24% Similarity=0.230 Sum_probs=24.0
Q ss_pred hhhHHhhhhhhheeeeeeeccccccCchhHHHHHHHHHHHhhhhhhhccc
Q 028112 126 GIPLLVGLLFFPFFYYLKVVLKIDVPSWLPVIVSFIFFGAALLGVNYGIV 175 (213)
Q Consensus 126 GiP~~lG~~~f~~~Y~L~~~~~~dvP~wv~~lvS~~~FGlglLGISYGiL 175 (213)
|.....|+. =||=.....+.+-|..+++.++ +|++.++.+++++|
T Consensus 8 ~~~ssaGLv----ryy~ee~~giKi~P~~Vl~~si-~~i~~V~~L~~~~~ 52 (53)
T 1rh5_C 8 GLATSAGLI----RYMDETFSKIRVKPEHVIGVTV-AFVIIEAILTYGRF 52 (53)
T ss_dssp -----------------CCCCSCCCCHHHHHHHHH-HHHHHHHHHHHTCC
T ss_pred CCcccccch----hhhhccCCccccCCeehhhhHH-HHHHHHHHHHHHHh
Confidence 555666664 4444545578888988877665 55677899999876
No 11
>1tvs_A Transactivator protein; transcription regulation; NMR {Equine infectious anemia virus} SCOP: j.40.1.1 PDB: 1tvt_A
Probab=22.26 E-value=26 Score=25.96 Aligned_cols=13 Identities=31% Similarity=0.478 Sum_probs=10.4
Q ss_pred HHHHHHhhhhhhhc
Q 028112 160 FIFFGAALLGVNYG 173 (213)
Q Consensus 160 ~~~FGlglLGISYG 173 (213)
.+||.- -||||||
T Consensus 38 qvCF~~-gLGIsYG 50 (75)
T 1tvs_A 38 QLCFLR-SLGIDYL 50 (75)
T ss_dssp HHHHHH-CSTTHHH
T ss_pred hhhhcc-ccccccc
Confidence 357766 8999999
No 12
>1oef_A Apolipoprotein E; glycoprotein, plasma, lipid transport, HDL, VLDL, chylomicron, sialic acid, heparin-binding; NMR {Homo sapiens} SCOP: j.39.1.1
Probab=21.06 E-value=58 Score=18.78 Aligned_cols=17 Identities=18% Similarity=0.413 Sum_probs=14.7
Q ss_pred HHHhhhhHHHHHHHHhh
Q 028112 190 WNEAQRNWPVFWQSLWS 206 (213)
Q Consensus 190 ~eE~k~N~~~~w~s~~~ 206 (213)
-++++++|..+|+.+..
T Consensus 7 ~e~ik~q~~~i~e~i~~ 23 (26)
T 1oef_A 7 VEDMQRQWAGLVEKVQA 23 (26)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 37899999999999875
Done!