Query 028112
Match_columns 213
No_of_seqs 91 out of 93
Neff 2.9
Searched_HMMs 13730
Date Mon Mar 25 10:11:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028112.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/028112hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pw4a_ f.38.1.1 (A:) Glycerol 30.7 14 0.00099 27.8 2.6 81 112-199 81-165 (447)
2 d1ly1a_ c.37.1.1 (A:) Polynucl 21.3 26 0.0019 23.0 2.4 26 104-129 126-151 (152)
3 d1ijda_ f.3.1.1 (A:) Light-har 17.2 21 0.0015 22.7 1.0 13 122-134 11-23 (46)
4 d1nkza_ f.3.1.1 (A:) Light-har 15.0 25 0.0018 22.9 1.0 13 122-134 11-23 (53)
5 d2axtj1 f.23.32.1 (J:7-40) Pho 12.6 62 0.0045 19.3 2.2 20 150-170 2-21 (34)
6 d1pv7a_ f.38.1.2 (A:) Lactose 11.5 71 0.0052 22.5 2.7 31 170-200 332-363 (417)
7 d1q90l_ f.23.24.1 (L:) PetL su 11.2 59 0.0043 18.9 1.8 17 158-174 5-21 (32)
8 d2fzpa1 d.345.1.1 (A:193-317) 10.3 49 0.0036 24.6 1.5 23 109-131 28-50 (125)
9 d1qmha1 c.47.2.1 (A:185-279) R 10.2 62 0.0045 22.0 1.9 15 108-122 16-30 (95)
10 d1iwga8 f.35.1.1 (A:513-566,A: 9.8 1E+02 0.0076 22.9 3.3 29 109-137 18-46 (222)
No 1
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=30.72 E-value=14 Score=27.76 Aligned_cols=81 Identities=16% Similarity=0.159 Sum_probs=40.8
Q ss_pred HHHHHHHhhHHHHhhh-hHHhhhhhhheeeeeeeccccccCchhHHHHHHHHHHHh---hhhhhhccccccCCCCCCCcc
Q 028112 112 IVTNRMISRIGFTVGI-PLLVGLLFFPFFYYLKVVLKIDVPSWLPVIVSFIFFGAA---LLGVNYGIVSSSWDPLREGSL 187 (213)
Q Consensus 112 vVs~RMlrRia~f~Gi-P~~lG~~~f~~~Y~L~~~~~~dvP~wv~~lvS~~~FGlg---lLGISYGiLSASWDp~reGSl 187 (213)
..+||.-||..+..|. -.++|..++.+..... ..+..+++..++.|++ .....+.+++-..++++.|..
T Consensus 81 ~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~ 153 (447)
T d1pw4a_ 81 SVSDRSNPRVFLPAGLILAAAVMLFMGFVPWAT-------SSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGI 153 (447)
T ss_dssp HHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHH-------SSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHH
T ss_pred HHHHHcCchHHHHHHHHHHHHHHhhccccchhh-------hhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhccccc
Confidence 4567887777666554 3344444333221111 1122233333333332 223344455555556667888
Q ss_pred ccHHHhhhhHHH
Q 028112 188 LGWNEAQRNWPV 199 (213)
Q Consensus 188 LG~eE~k~N~~~ 199 (213)
+|+-..-.+++-
T Consensus 154 ~~~~~~~~~~g~ 165 (447)
T d1pw4a_ 154 VSVWNCAHNVGG 165 (447)
T ss_dssp HHHHHHHHHHHH
T ss_pred ccccccccchhh
Confidence 888777776654
No 2
>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}
Probab=21.27 E-value=26 Score=23.03 Aligned_cols=26 Identities=19% Similarity=0.314 Sum_probs=21.6
Q ss_pred cccCCCcHHHHHHHHhhHHHHhhhhH
Q 028112 104 AEAGVIPEIVTNRMISRIGFTVGIPL 129 (213)
Q Consensus 104 ~~~~aIPevVs~RMlrRia~f~GiP~ 129 (213)
+....+|+.|.+||.+|+--+.|.|.
T Consensus 126 R~~~~~~~~~i~~~~~~~~~~~~~~~ 151 (152)
T d1ly1a_ 126 RGTKAVPIDVLRSMYKSMREYLGLPV 151 (152)
T ss_dssp CGGGCCCHHHHHHHHHHHHHHHTCCC
T ss_pred cCCCCCCHHHHHHHHHHHHhhcCCCC
Confidence 34446899999999999999988874
No 3
>d1ijda_ f.3.1.1 (A:) Light-harvesting complex subunits {Rhodoblastus acidophilus [TaxId: 1074]}
Probab=17.22 E-value=21 Score=22.75 Aligned_cols=13 Identities=31% Similarity=0.720 Sum_probs=10.2
Q ss_pred HHHhhhhHHhhhh
Q 028112 122 GFTVGIPLLVGLL 134 (213)
Q Consensus 122 a~f~GiP~~lG~~ 134 (213)
=..+|+|++||-.
T Consensus 11 ~PtvG~Pl~LgsV 23 (46)
T d1ijda_ 11 PPAFGLPLMLGAV 23 (46)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CCCcCchhHHHHH
Confidence 3578999999854
No 4
>d1nkza_ f.3.1.1 (A:) Light-harvesting complex subunits {Purple bacterium (Rhodoblastus acidophilus) [TaxId: 1074]}
Probab=15.01 E-value=25 Score=22.90 Aligned_cols=13 Identities=38% Similarity=0.754 Sum_probs=10.3
Q ss_pred HHHhhhhHHhhhh
Q 028112 122 GFTVGIPLLVGLL 134 (213)
Q Consensus 122 a~f~GiP~~lG~~ 134 (213)
=..+|+|++||-.
T Consensus 11 ~PtVG~Pl~LgsV 23 (53)
T d1nkza_ 11 NPAIGIPALLGSV 23 (53)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CCCcCchhHHHHH
Confidence 3578999999854
No 5
>d2axtj1 f.23.32.1 (J:7-40) Photosystem II reaction center protein J, PsbJ {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=12.56 E-value=62 Score=19.25 Aligned_cols=20 Identities=20% Similarity=0.479 Sum_probs=12.1
Q ss_pred cCchhHHHHHHHHHHHhhhhh
Q 028112 150 VPSWLPVIVSFIFFGAALLGV 170 (213)
Q Consensus 150 vP~wv~~lvS~~~FGlglLGI 170 (213)
+|.|++-.+. ++-.++++||
T Consensus 2 iPLWlv~tv~-G~~vi~~vG~ 21 (34)
T d2axtj1 2 IPLWIVATVA-GMGVIVIVGL 21 (34)
T ss_dssp CCHHHHHHHH-HHHHHHHHHH
T ss_pred CcEEEeeehh-hhhhHhheee
Confidence 6888765543 3344566665
No 6
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=11.53 E-value=71 Score=22.50 Aligned_cols=31 Identities=3% Similarity=-0.031 Sum_probs=17.9
Q ss_pred hhhccccccCCCCCCCccccH-HHhhhhHHHH
Q 028112 170 VNYGIVSSSWDPLREGSLLGW-NEAQRNWPVF 200 (213)
Q Consensus 170 ISYGiLSASWDp~reGSlLG~-eE~k~N~~~~ 200 (213)
..+..++..-+++..|+..|+ -.+-.+++.+
T Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 363 (417)
T d1pv7a_ 332 GCFKYITSQFEVRFSATIYLVCFCFFKQLAMI 363 (417)
T ss_dssp HHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHH
T ss_pred HHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHH
Confidence 334455555667667888886 3444445443
No 7
>d1q90l_ f.23.24.1 (L:) PetL subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=11.21 E-value=59 Score=18.94 Aligned_cols=17 Identities=24% Similarity=0.260 Sum_probs=10.0
Q ss_pred HHHHHHHHhhhhhhhcc
Q 028112 158 VSFIFFGAALLGVNYGI 174 (213)
Q Consensus 158 vS~~~FGlglLGISYGi 174 (213)
+|.+-..+|.||++.||
T Consensus 5 ~syvglligal~~tlgi 21 (32)
T d1q90l_ 5 TSYVGLLIGALVFTLGI 21 (32)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44444556666666665
No 8
>d2fzpa1 d.345.1.1 (A:193-317) E3 ubiquitin-protein ligase NRDP1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.27 E-value=49 Score=24.64 Aligned_cols=23 Identities=26% Similarity=0.395 Sum_probs=21.4
Q ss_pred CcHHHHHHHHhhHHHHhhhhHHh
Q 028112 109 IPEIVTNRMISRIGFTVGIPLLV 131 (213)
Q Consensus 109 IPevVs~RMlrRia~f~GiP~~l 131 (213)
-|+.+.+.|+||-+..+|-|+-+
T Consensus 28 TPD~~l~~~ir~~L~~sgCP~hi 50 (125)
T d2fzpa1 28 TPDAVLQAVIKRSLVESGCPASI 50 (125)
T ss_dssp SCCHHHHHHHHHHHHHTTCCHHH
T ss_pred CccHHHHHHHHHHhhhcCCChHH
Confidence 69999999999999999999865
No 9
>d1qmha1 c.47.2.1 (A:185-279) RNA 3'-terminal phosphate cyclase, RPTC, insert domain {Escherichia coli [TaxId: 562]}
Probab=10.23 E-value=62 Score=22.01 Aligned_cols=15 Identities=27% Similarity=0.477 Sum_probs=12.5
Q ss_pred CCcHHHHHHHHhhHH
Q 028112 108 VIPEIVTNRMISRIG 122 (213)
Q Consensus 108 aIPevVs~RMlrRia 122 (213)
.+|..|++||+.+..
T Consensus 16 ~LP~~Va~R~~~~a~ 30 (95)
T d1qmha1 16 GVPRHVAEREIATLA 30 (95)
T ss_dssp SSCHHHHHHHHHHHH
T ss_pred cCChHHHHHHHHHHH
Confidence 499999999987653
No 10
>d1iwga8 f.35.1.1 (A:513-566,A:869-1036) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=9.76 E-value=1e+02 Score=22.90 Aligned_cols=29 Identities=10% Similarity=-0.058 Sum_probs=21.7
Q ss_pred CcHHHHHHHHhhHHHHhhhhHHhhhhhhh
Q 028112 109 IPEIVTNRMISRIGFTVGIPLLVGLLFFP 137 (213)
Q Consensus 109 IPevVs~RMlrRia~f~GiP~~lG~~~f~ 137 (213)
....+..|..|+|.+...+|.++++.+.-
T Consensus 18 ~v~~~~~r~~r~~~~y~~l~~g~~~~f~~ 46 (222)
T d1iwga8 18 SVGGILRSTGRYLVLYLIIVVGMAYLFVR 46 (222)
T ss_dssp HHHHHHHCCHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHhHHHHHHHHHHHhhhheeeecc
Confidence 45667778888888888888887777533
Done!