BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028114
(213 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4GXW|A Chain A, Crystal Structure Of A Cog1816 Amidohydrolase (Target
Efi-505188) From Burkhoderia Ambifaria, With Bound Zn
pdb|4GXW|B Chain B, Crystal Structure Of A Cog1816 Amidohydrolase (Target
Efi-505188) From Burkhoderia Ambifaria, With Bound Zn
Length = 380
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/211 (25%), Positives = 89/211 (42%), Gaps = 40/211 (18%)
Query: 4 FASMPKVELHAHLNGSIRDSTLLELARVLGEKGVIVFSDVEHVIMKSDRSLHEVFKLFDL 63
F ++PKVELH HL G++R T + LA+ G I ++++ + ++ + + L L
Sbjct: 26 FHALPKVELHCHLLGAVRHDTFVALAQRSGAP--IERAEIDAFYARGEKPVGVLHVLRAL 83
Query: 64 IHVLTTDHATVTRITQEVVEDFASENIVYLELRTTPKRNESIGMSKRSYMD---AVVEGL 120
L T + RI E +ED A+ N+ + E P ++ +S Y D A+V G+
Sbjct: 84 DRYLLTRPDDLRRIAYEYLEDAAAHNVRHAEFFWNP--TGTVRVSGIPYADAQAAIVTGM 141
Query: 121 RAVSAVDVDFASRSIDVRRPVNTKNMNDACNGTRGKKIYVRLLLSIDRRETTEAAMETVK 180
R + R I RL+ SIDR + + A+ V
Sbjct: 142 R-----------------------------DAARDFGIGARLIPSIDREQDPDEAVAIVD 172
Query: 181 LALEMR--DLGVVGIDLSGN--PTKGEWYSF 207
R ++ +GID N P + W ++
Sbjct: 173 WMKANRADEVAGIGIDYRENDRPPELFWKAY 203
>pdb|1NDV|A Chain A, Crystal Structure Of Adenosine Deaminase Complexed With
Fr117016
pdb|1NDW|A Chain A, Crystal Structure Of Adenosine Deaminase Complexed With
Fr221647
pdb|1NDY|A Chain A, Crystal Structure Of Adenosine Deaminase Complexed With
Fr230513
pdb|1NDZ|A Chain A, Crystal Structure Of Adenosine Deaminase Complexed With
Fr235999
pdb|1O5R|A Chain A, Crystal Structure Of Adenosine Deaminase Complexed With A
Potent Inhibitor
pdb|1UML|A Chain A, Crystal Structure Of Adenosine Deaminase Complexed With A
Potent Inhibitor Fr233624
pdb|1V79|A Chain A, Crystal Structures Of Adenosine Deaminase Complexed With
Potent Inhibitors
pdb|1V7A|A Chain A, Crystal Structures Of Adenosine Deaminase Complexed With
Potent Inhibitors
pdb|1VFL|A Chain A, Adenosine Deaminase
pdb|1WXY|A Chain A, Crystal Structure Of Adenosine Deaminase Ligated With A
Potent Inhibitor
pdb|1WXZ|A Chain A, Crystal Structure Of Adenosine Deaminase Ligated With A
Potent Inhibitor
pdb|2E1W|A Chain A, Crystal Structure Of Adenosine Deaminase Complexed With
Potent Inhibitors
pdb|2Z7G|A Chain A, Crystal Structure Of Adenosine Deaminase Ligated With Ehna
Length = 356
Score = 51.2 bits (121), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 53/199 (26%), Positives = 92/199 (46%), Gaps = 27/199 (13%)
Query: 8 PKVELHAHLNGSIRDSTLLELARVLGEKGVIVFSD----VEHVI-MKSDRSLHEVFKLFD 62
PKVELH HL+G+I+ T+L + +G+ + +D ++++I M +L + FD
Sbjct: 9 PKVELHVHLDGAIKPETILYYGK---RRGIALPADTPEELQNIIGMDKPLTLPDFLAKFD 65
Query: 63 -LIHVLTTDHATVTRITQEVVEDFASENIVYLELRTTPKRNESIGMSKRSYMDAVVEGLR 121
+ + + RI E VE A + +VY+E+R +P + SK
Sbjct: 66 YYMPAIAGCRDAIKRIAYEFVEMKAKDGVVYVEVRYSP---HLLANSK------------ 110
Query: 122 AVSAVDVDFASRSIDVRRPVNTKNMNDACNGTRGKKIYVRLLLSIDRRETTEAAMETVKL 181
V + + A + V+ N G R + VR +L R + + ++ E V+L
Sbjct: 111 -VEPIPWNQAEGDLTPDEVVSLVNQG-LQEGERDFGVKVRSILCCMRHQPSWSS-EVVEL 167
Query: 182 ALEMRDLGVVGIDLSGNPT 200
+ R+ VV IDL+G+ T
Sbjct: 168 CKKYREQTVVAIDLAGDET 186
>pdb|1KRM|A Chain A, Crystal Structure Of Bovine Adenosine Deaminase Complexed
With 6-Hydroxyl-1,6-Dihydropurine Riboside
pdb|1QXL|A Chain A, Crystal Structure Of Adenosine Deaminase Complexed With
Fr235380
Length = 356
Score = 50.4 bits (119), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 52/199 (26%), Positives = 88/199 (44%), Gaps = 27/199 (13%)
Query: 8 PKVELHAHLNGSIRDSTLLELARVLGEKGVIVFSDVEH-----VIMKSDRSLHEVFKLFD 62
PKVELH HL+G+I+ T+L + +G+ + +D + M +L + FD
Sbjct: 9 PKVELHVHLDGAIKPETILYYGK---RRGIALPADTPEELLNIIGMDKPLTLPDFLAKFD 65
Query: 63 -LIHVLTTDHATVTRITQEVVEDFASENIVYLELRTTPKRNESIGMSKRSYMDAVVEGLR 121
+ + + RI E VE A + +VY+E+R +P + SK
Sbjct: 66 YYMPAIAGCRDAIKRIAYEFVEMKAKDGVVYVEVRYSP---HLLANSK------------ 110
Query: 122 AVSAVDVDFASRSIDVRRPVNTKNMNDACNGTRGKKIYVRLLLSIDRRETTEAAMETVKL 181
V + + A + V+ N G R + VR +L R + + ++ E V+L
Sbjct: 111 -VEPIPWNQAEGDLTPDEVVSLVNQG-LQEGERDFGVKVRSILCCMRHQPSWSS-EVVEL 167
Query: 182 ALEMRDLGVVGIDLSGNPT 200
+ R+ VV IDL+G+ T
Sbjct: 168 CKKYREQTVVAIDLAGDET 186
>pdb|1W1I|E Chain E, Crystal Structure Of Dipeptidyl Peptidase Iv (Dppiv Or
Cd26) In Complex With Adenosine Deaminase
pdb|1W1I|F Chain F, Crystal Structure Of Dipeptidyl Peptidase Iv (Dppiv Or
Cd26) In Complex With Adenosine Deaminase
pdb|1W1I|G Chain G, Crystal Structure Of Dipeptidyl Peptidase Iv (Dppiv Or
Cd26) In Complex With Adenosine Deaminase
pdb|1W1I|H Chain H, Crystal Structure Of Dipeptidyl Peptidase Iv (Dppiv Or
Cd26) In Complex With Adenosine Deaminase
Length = 357
Score = 50.4 bits (119), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 52/199 (26%), Positives = 88/199 (44%), Gaps = 27/199 (13%)
Query: 8 PKVELHAHLNGSIRDSTLLELARVLGEKGVIVFSDVEH-----VIMKSDRSLHEVFKLFD 62
PKVELH HL+G+I+ T+L + +G+ + +D + M +L + FD
Sbjct: 10 PKVELHVHLDGAIKPETILYYGK---RRGIALPADTPEELLNIIGMDKPLTLPDFLAKFD 66
Query: 63 -LIHVLTTDHATVTRITQEVVEDFASENIVYLELRTTPKRNESIGMSKRSYMDAVVEGLR 121
+ + + RI E VE A + +VY+E+R +P + SK
Sbjct: 67 YYMPAIAGCRDAIKRIAYEFVEMKAKDGVVYVEVRYSP---HLLANSK------------ 111
Query: 122 AVSAVDVDFASRSIDVRRPVNTKNMNDACNGTRGKKIYVRLLLSIDRRETTEAAMETVKL 181
V + + A + V+ N G R + VR +L R + + ++ E V+L
Sbjct: 112 -VEPIPWNQAEGDLTPDEVVSLVNQG-LQEGERDFGVKVRSILCCMRHQPSWSS-EVVEL 168
Query: 182 ALEMRDLGVVGIDLSGNPT 200
+ R+ VV IDL+G+ T
Sbjct: 169 CKKYREQTVVAIDLAGDET 187
>pdb|2BGN|E Chain E, Hiv-1 Tat Protein Derived N-Terminal Nonapeptide Trp2-Tat
(1-9) Bound To The Active Site Of Dipeptidyl Peptidase
Iv (Cd26)
pdb|2BGN|F Chain F, Hiv-1 Tat Protein Derived N-Terminal Nonapeptide Trp2-Tat
(1-9) Bound To The Active Site Of Dipeptidyl Peptidase
Iv (Cd26)
pdb|2BGN|G Chain G, Hiv-1 Tat Protein Derived N-Terminal Nonapeptide Trp2-Tat
(1-9) Bound To The Active Site Of Dipeptidyl Peptidase
Iv (Cd26)
pdb|2BGN|H Chain H, Hiv-1 Tat Protein Derived N-Terminal Nonapeptide Trp2-Tat
(1-9) Bound To The Active Site Of Dipeptidyl Peptidase
Iv (Cd26)
Length = 363
Score = 50.4 bits (119), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 52/199 (26%), Positives = 88/199 (44%), Gaps = 27/199 (13%)
Query: 8 PKVELHAHLNGSIRDSTLLELARVLGEKGVIVFSDVEH-----VIMKSDRSLHEVFKLFD 62
PKVELH HL+G+I+ T+L + +G+ + +D + M +L + FD
Sbjct: 10 PKVELHVHLDGAIKPETILYYGK---RRGIALPADTPEELLNIIGMDKPLTLPDFLAKFD 66
Query: 63 -LIHVLTTDHATVTRITQEVVEDFASENIVYLELRTTPKRNESIGMSKRSYMDAVVEGLR 121
+ + + RI E VE A + +VY+E+R +P + SK
Sbjct: 67 YYMPAIAGCRDAIKRIAYEFVEMKAKDGVVYVEVRYSP---HLLANSK------------ 111
Query: 122 AVSAVDVDFASRSIDVRRPVNTKNMNDACNGTRGKKIYVRLLLSIDRRETTEAAMETVKL 181
V + + A + V+ N G R + VR +L R + + ++ E V+L
Sbjct: 112 -VEPIPWNQAEGDLTPDEVVSLVNQG-LQEGERDFGVKVRSILCCMRHQPSWSS-EVVEL 168
Query: 182 ALEMRDLGVVGIDLSGNPT 200
+ R+ VV IDL+G+ T
Sbjct: 169 CKKYREQTVVAIDLAGDET 187
>pdb|1UIP|A Chain A, Adenosine Deaminase (His 238 Glu Mutant)
Length = 349
Score = 50.4 bits (119), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 55/200 (27%), Positives = 91/200 (45%), Gaps = 29/200 (14%)
Query: 8 PKVELHAHLNGSIRDSTLLELARVLGEKGVIVFSD----VEHVI-MKSDRSLHEVFKLFD 62
PKVELH HL+G+I+ T+L + ++G+ + +D + ++I M SL FD
Sbjct: 7 PKVELHVHLDGAIKPETILYFGK---KRGIALPADTVEELRNIIGMDKPLSLPGFLAKFD 63
Query: 63 -LIHVLTTDHATVTRITQEVVEDFASENIVYLELRTTPKRNESIGMSKRSYMD-AVVEGL 120
+ V+ + RI E VE A E +VY+E+R +P + SK M EG
Sbjct: 64 YYMPVIAGCREAIKRIAYEFVEMKAKEGVVYVEVRYSP---HLLANSKVDPMPWNQTEGD 120
Query: 121 RAVSAVDVDFASRSIDVRRPVNTKNMNDACNGTRGKKIYVRLLLSIDRRETTEAAMETVK 180
V VD ++ + G + I VR +L R + + ++E ++
Sbjct: 121 VTPDDV-VDLVNQGLQ--------------EGEQAFGIKVRSILCCMRHQPS-WSLEVLE 164
Query: 181 LALEMRDLGVVGIDLSGNPT 200
L + VV +DL+G+ T
Sbjct: 165 LCKKYNQKTVVAMDLAGDET 184
>pdb|1A4L|A Chain A, Ada Structure Complexed With Deoxycoformycin At Ph 7.0
pdb|1A4L|B Chain B, Ada Structure Complexed With Deoxycoformycin At Ph 7.0
pdb|1A4L|C Chain C, Ada Structure Complexed With Deoxycoformycin At Ph 7.0
pdb|1A4L|D Chain D, Ada Structure Complexed With Deoxycoformycin At Ph 7.0
pdb|1A4M|A Chain A, Ada Structure Complexed With Purine Riboside At Ph 7.0
pdb|1A4M|B Chain B, Ada Structure Complexed With Purine Riboside At Ph 7.0
pdb|1A4M|C Chain C, Ada Structure Complexed With Purine Riboside At Ph 7.0
pdb|1A4M|D Chain D, Ada Structure Complexed With Purine Riboside At Ph 7.0
pdb|1ADD|A Chain A, A Pre-Transition State Mimic Of An Enzyme: X-Ray Structure
Of Adenosine Deaminase With Bound 1-Deaza-Adenosine And
Zinc-Activated Water
pdb|3MVT|A Chain A, Crystal Structure Of Apo Mada At 2.2a Resolution
pdb|3MVT|C Chain C, Crystal Structure Of Apo Mada At 2.2a Resolution
pdb|3MVI|A Chain A, Crystal Structure Of Holo Mada At 1.6 A Resolution
pdb|3MVI|B Chain B, Crystal Structure Of Holo Mada At 1.6 A Resolution
Length = 349
Score = 50.4 bits (119), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 55/200 (27%), Positives = 91/200 (45%), Gaps = 29/200 (14%)
Query: 8 PKVELHAHLNGSIRDSTLLELARVLGEKGVIVFSD----VEHVI-MKSDRSLHEVFKLFD 62
PKVELH HL+G+I+ T+L + ++G+ + +D + ++I M SL FD
Sbjct: 7 PKVELHVHLDGAIKPETILYFGK---KRGIALPADTVEELRNIIGMDKPLSLPGFLAKFD 63
Query: 63 -LIHVLTTDHATVTRITQEVVEDFASENIVYLELRTTPKRNESIGMSKRSYMD-AVVEGL 120
+ V+ + RI E VE A E +VY+E+R +P + SK M EG
Sbjct: 64 YYMPVIAGCREAIKRIAYEFVEMKAKEGVVYVEVRYSP---HLLANSKVDPMPWNQTEGD 120
Query: 121 RAVSAVDVDFASRSIDVRRPVNTKNMNDACNGTRGKKIYVRLLLSIDRRETTEAAMETVK 180
V VD ++ + G + I VR +L R + + ++E ++
Sbjct: 121 VTPDDV-VDLVNQGLQ--------------EGEQAFGIKVRSILCCMRHQPS-WSLEVLE 164
Query: 181 LALEMRDLGVVGIDLSGNPT 200
L + VV +DL+G+ T
Sbjct: 165 LCKKYNQKTVVAMDLAGDET 184
>pdb|1UIO|A Chain A, Adenosine Deaminase (His 238 Ala Mutant)
Length = 349
Score = 50.4 bits (119), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 55/200 (27%), Positives = 91/200 (45%), Gaps = 29/200 (14%)
Query: 8 PKVELHAHLNGSIRDSTLLELARVLGEKGVIVFSD----VEHVI-MKSDRSLHEVFKLFD 62
PKVELH HL+G+I+ T+L + ++G+ + +D + ++I M SL FD
Sbjct: 7 PKVELHVHLDGAIKPETILYFGK---KRGIALPADTVEELRNIIGMDKPLSLPGFLAKFD 63
Query: 63 -LIHVLTTDHATVTRITQEVVEDFASENIVYLELRTTPKRNESIGMSKRSYMD-AVVEGL 120
+ V+ + RI E VE A E +VY+E+R +P + SK M EG
Sbjct: 64 YYMPVIAGCREAIKRIAYEFVEMKAKEGVVYVEVRYSP---HLLANSKVDPMPWNQTEGD 120
Query: 121 RAVSAVDVDFASRSIDVRRPVNTKNMNDACNGTRGKKIYVRLLLSIDRRETTEAAMETVK 180
V VD ++ + G + I VR +L R + + ++E ++
Sbjct: 121 VTPDDV-VDLVNQGLQ--------------EGEQAFGIKVRSILCCMRHQPS-WSLEVLE 164
Query: 181 LALEMRDLGVVGIDLSGNPT 200
L + VV +DL+G+ T
Sbjct: 165 LCKKYNQKTVVAMDLAGDET 184
>pdb|1FKX|A Chain A, Murine Adenosine Deaminase (D296a)
Length = 349
Score = 50.4 bits (119), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 56/201 (27%), Positives = 93/201 (46%), Gaps = 31/201 (15%)
Query: 8 PKVELHAHLNGSIRDSTLLELARVLGEKGVIVFSD----VEHVI-MKSDRSLHEVFKLFD 62
PKVELH HL+G+I+ T+L + ++G+ + +D + ++I M SL FD
Sbjct: 7 PKVELHVHLDGAIKPETILYFGK---KRGIALPADTVEELRNIIGMDKPLSLPGFLAKFD 63
Query: 63 -LIHVLTTDHATVTRITQEVVEDFASENIVYLELRTTPKRNESIGMSKRSYMD-AVVEGL 120
+ V+ + RI E VE A E +VY+E+R +P + SK M EG
Sbjct: 64 YYMPVIAGCREAIKRIAYEFVEMKAKEGVVYVEVRYSP---HLLANSKVDPMPWNQTEG- 119
Query: 121 RAVSAVD-VDFASRSIDVRRPVNTKNMNDACNGTRGKKIYVRLLLSIDRRETTEAAMETV 179
V+ D VD ++ + G + I VR +L R + + ++E +
Sbjct: 120 -DVTPDDVVDLVNQGLQ--------------EGEQAFGIKVRSILCCMRHQPS-WSLEVL 163
Query: 180 KLALEMRDLGVVGIDLSGNPT 200
+L + VV +DL+G+ T
Sbjct: 164 ELCKKYNQKTVVAMDLAGDET 184
>pdb|1FKW|A Chain A, Murine Adenosine Deaminase (D295e)
Length = 349
Score = 50.4 bits (119), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 56/201 (27%), Positives = 93/201 (46%), Gaps = 31/201 (15%)
Query: 8 PKVELHAHLNGSIRDSTLLELARVLGEKGVIVFSD----VEHVI-MKSDRSLHEVFKLFD 62
PKVELH HL+G+I+ T+L + ++G+ + +D + ++I M SL FD
Sbjct: 7 PKVELHVHLDGAIKPETILYFGK---KRGIALPADTVEELRNIIGMDKPLSLPGFLAKFD 63
Query: 63 -LIHVLTTDHATVTRITQEVVEDFASENIVYLELRTTPKRNESIGMSKRSYMD-AVVEGL 120
+ V+ + RI E VE A E +VY+E+R +P + SK M EG
Sbjct: 64 YYMPVIAGCREAIKRIAYEFVEMKAKEGVVYVEVRYSP---HLLANSKVDPMPWNQTEG- 119
Query: 121 RAVSAVD-VDFASRSIDVRRPVNTKNMNDACNGTRGKKIYVRLLLSIDRRETTEAAMETV 179
V+ D VD ++ + G + I VR +L R + + ++E +
Sbjct: 120 -DVTPDDVVDLVNQGLQ--------------EGEQAFGIKVRSILCCMRHQPS-WSLEVL 163
Query: 180 KLALEMRDLGVVGIDLSGNPT 200
+L + VV +DL+G+ T
Sbjct: 164 ELCKKYNQKTVVAMDLAGDET 184
>pdb|2ADA|A Chain A, Atomic Structure Of Adenosine Deaminase Complexed With A
Transition-State Analog: Understanding Catalysis And
Immunodeficiency Mutations
Length = 352
Score = 50.4 bits (119), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 55/200 (27%), Positives = 91/200 (45%), Gaps = 29/200 (14%)
Query: 8 PKVELHAHLNGSIRDSTLLELARVLGEKGVIVFSD----VEHVI-MKSDRSLHEVFKLFD 62
PKVELH HL+G+I+ T+L + ++G+ + +D + ++I M SL FD
Sbjct: 10 PKVELHVHLDGAIKPETILYFGK---KRGIALPADTVEELRNIIGMDKPLSLPGFLAKFD 66
Query: 63 -LIHVLTTDHATVTRITQEVVEDFASENIVYLELRTTPKRNESIGMSKRSYMD-AVVEGL 120
+ V+ + RI E VE A E +VY+E+R +P + SK M EG
Sbjct: 67 YYMPVIAGCREAIKRIAYEFVEMKAKEGVVYVEVRYSP---HLLANSKVDPMPWNQTEGD 123
Query: 121 RAVSAVDVDFASRSIDVRRPVNTKNMNDACNGTRGKKIYVRLLLSIDRRETTEAAMETVK 180
V VD ++ + G + I VR +L R + + ++E ++
Sbjct: 124 VTPDDV-VDLVNQGLQ--------------EGEQAFGIKVRSILCCMRHQPS-WSLEVLE 167
Query: 181 LALEMRDLGVVGIDLSGNPT 200
L + VV +DL+G+ T
Sbjct: 168 LCKKYNQKTVVAMDLAGDET 187
>pdb|3KM8|A Chain A, Crystal Structuore Of Adenosine Deaminase From Mus
Musculus Complexed With 9-Deazainosine
pdb|3KM8|B Chain B, Crystal Structuore Of Adenosine Deaminase From Mus
Musculus Complexed With 9-Deazainosine
Length = 352
Score = 50.1 bits (118), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 56/200 (28%), Positives = 90/200 (45%), Gaps = 29/200 (14%)
Query: 8 PKVELHAHLNGSIRDSTLLELARVLGEKGVIVFSD-VEH----VIMKSDRSLHEVFKLFD 62
PKVELH HL+G+I+ T+L + ++G+ + +D VE + M SL FD
Sbjct: 10 PKVELHVHLDGAIKPETILYFGK---KRGIALPADTVEELRNIIGMDKPLSLPGFLAKFD 66
Query: 63 -LIHVLTTDHATVTRITQEVVEDFASENIVYLELRTTPKRNESIGMSKRSYMD-AVVEGL 120
+ V+ + RI E VE A E +VY+E+R +P + SK M EG
Sbjct: 67 YYMPVIAGCREAIKRIAYEFVEMKAKEGVVYVEVRYSP---HLLANSKVDPMPWNQTEGD 123
Query: 121 RAVSAVDVDFASRSIDVRRPVNTKNMNDACNGTRGKKIYVRLLLSIDRRETTEAAMETVK 180
V VD ++ + G + I VR +L R + + ++E ++
Sbjct: 124 VTPDDV-VDLVNQGLQ--------------EGEQAFGIKVRSILCCMRHQPS-WSLEVLE 167
Query: 181 LALEMRDLGVVGIDLSGNPT 200
L + VV +DL+G+ T
Sbjct: 168 LCKKYNQKTVVAMDLAGDET 187
>pdb|3T1G|A Chain A, Engineering Of Organophosphate Hydrolase By Computational
Design And Directed Evolution
Length = 353
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 54/98 (55%), Gaps = 9/98 (9%)
Query: 8 PKVELHAHLNGSIRDSTLLELARVLGEKGVIVFSD-VEHV--IMKSDRSLHEVFKLFD-- 62
PKVELH HL+G+I+ T+L + ++G+ + +D VE + I+ D+ L + L
Sbjct: 11 PKVELHVHLSGAIKPETILYFGK---KRGIALPADTVEELRNIIGMDKPLSQPGTLAKWD 67
Query: 63 -LIHVLTTDHATVTRITQEVVEDFASENIVYLELRTTP 99
+ V+ + RI E VE A E +VY+E+R +P
Sbjct: 68 YYMPVIAGCREAIKRIAYEFVEMKAKEGVVYVEVRYSP 105
>pdb|3IAR|A Chain A, The Crystal Structure Of Human Adenosine Deaminase
Length = 367
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 49/98 (50%), Gaps = 9/98 (9%)
Query: 8 PKVELHAHLNGSIRDSTLLELARVLGEKGVIVFSDVEH-----VIMKSDRSLHEVFKLFD 62
PKVELH HL+GSI+ T+L R +G+ + ++ + M +L + FD
Sbjct: 7 PKVELHVHLDGSIKPETILYYGR---RRGIALPANTAEGLLNVIGMDKPLTLPDFLAKFD 63
Query: 63 -LIHVLTTDHATVTRITQEVVEDFASENIVYLELRTTP 99
+ + + RI E VE A E +VY+E+R +P
Sbjct: 64 YYMPAIAGCREAIKRIAYEFVEMKAKEGVVYVEVRYSP 101
>pdb|3OU8|A Chain A, The Crystal Structure Of Adenosine Deaminase From
Pseudomonas Aeruginosa
pdb|3OU8|B Chain B, The Crystal Structure Of Adenosine Deaminase From
Pseudomonas Aeruginosa
pdb|3PAN|A Chain A, The Crystal Structure Of Adenosine Deaminase With
Hypoxanthine Bound From Pseudomonas Aeruginosa
pdb|3PAN|B Chain B, The Crystal Structure Of Adenosine Deaminase With
Hypoxanthine Bound From Pseudomonas Aeruginosa
pdb|3PAO|A Chain A, The Crystal Structure Of Adenosine Deaminase With Adenine
Bound From Pseudomonas Aeruginosa
pdb|3PAO|B Chain B, The Crystal Structure Of Adenosine Deaminase With Adenine
Bound From Pseudomonas Aeruginosa
pdb|3PBM|A Chain A, The Crystal Structure Of Adenosine Deaminase In Complex
With Chloropurine From Pseudomonas Aeruginosa
pdb|3PBM|B Chain B, The Crystal Structure Of Adenosine Deaminase In Complex
With Chloropurine From Pseudomonas Aeruginosa
Length = 326
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 52/206 (25%), Positives = 91/206 (44%), Gaps = 41/206 (19%)
Query: 2 EWFASMPKVELHAHLNGSIRDSTLLELARVLGEKGVIVFSDVEHVIMKSDRSLHEVFKLF 61
EW ++PK ELH HL G++ L LA + + ++DVE ++ + + + +
Sbjct: 5 EWLNALPKAELHLHLEGTLEPELLFALAE--RNRIALPWNDVE--TLRKAYAFNNLQEFL 60
Query: 62 DLIH----VLTTDHATVTRITQEVVEDFASENIVYLELRTTPKRNESIGMSKRSYMDAVV 117
DL + VL T+ +T ++ ++N+V++E P+ + G+ + V+
Sbjct: 61 DLYYAGADVLRTEQ-DFYDLTWAYLQKCKAQNVVHVEPFFDPQTHTDRGIP----FEVVL 115
Query: 118 EGLRAVSAVDVDFASRSIDVRRPVNTKNMNDACNGTRGKKIYVRLLLSIDRRETTEAAME 177
G+RA A R +G + I L+LS R + E A +
Sbjct: 116 AGIRA--------ALR-----------------DGEKLLGIRHGLILSFLRHLSEEQAQK 150
Query: 178 TVKLALEMRDLGV-VGIDLS--GNPT 200
T+ AL RD + VG+D S G+P
Sbjct: 151 TLDQALPFRDAFIAVGLDSSEVGHPP 176
>pdb|2AMX|A Chain A, Crystal Structure Of Plasmodium Yoelii Adenosine Deaminase
(Py02076)
pdb|2AMX|B Chain B, Crystal Structure Of Plasmodium Yoelii Adenosine Deaminase
(Py02076)
Length = 376
Score = 32.7 bits (73), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 28/123 (22%), Positives = 56/123 (45%), Gaps = 3/123 (2%)
Query: 2 EWFASMPKVELHAHLNGSIRDSTLLELARVLGEKGVIVFSDV--EHVIMKSDRSLHEVFK 59
E + +PKVELH HL+ + L+ AR + + ++ ++ K +SL E +
Sbjct: 44 EIWRRIPKVELHCHLDLTFSAEFFLKWARKYNLQPNMSDDEILDHYLFTKEGKSLAEFIR 103
Query: 60 LFDLIHVLTTDHATVTRITQEVVEDFASENIVYLELRTTPKR-NESIGMSKRSYMDAVVE 118
+ L D+ + + + V + E +V +E R +P + S G+ A ++
Sbjct: 104 KAISVSDLYRDYDFIEDLAKWAVIEKYKEGVVLMEFRYSPTFVSSSYGLDVELIHKAFIK 163
Query: 119 GLR 121
G++
Sbjct: 164 GIK 166
>pdb|3EWC|A Chain A, Crystal Structure Of Adenosine Deaminase From Plasmodial
Vivax In Complex With Mt-Coformycin
Length = 371
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 56/130 (43%), Gaps = 23/130 (17%)
Query: 7 MPKVELHAHLNGSIRDSTLLELARVLGEKGVIVFSDVE----HVIMKSDRSLHE----VF 58
+PK ELH HL+ + R + + SD E ++ K +SL E
Sbjct: 36 IPKCELHCHLDLCFSADFFVSCIRKYNLQPNL--SDEEVLDYYLFAKGGKSLGEFVEKAI 93
Query: 59 KLFDLIHVLTTDHATVTRITQEVVEDFASENIVYLELRTTP-----KRNESIGMSKRSYM 113
K+ D+ H D+ + + + V + E +V +E R +P K N I + +
Sbjct: 94 KVADIFH----DYEVIEDLAKHAVFNKYKEGVVLMEFRYSPTFVAFKYNLDIELIHQ--- 146
Query: 114 DAVVEGLRAV 123
A+V+G++ V
Sbjct: 147 -AIVKGIKEV 155
>pdb|3EWD|A Chain A, Crystal Structure Of Adenosine Deaminase Mutant (Delta
Asp172) From Plasmodium Vivax In Complex With
Mt-Coformycin
Length = 370
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 56/130 (43%), Gaps = 23/130 (17%)
Query: 7 MPKVELHAHLNGSIRDSTLLELARVLGEKGVIVFSDVE----HVIMKSDRSLHE----VF 58
+PK ELH HL+ + R + + SD E ++ K +SL E
Sbjct: 36 IPKCELHCHLDLCFSADFFVSCIRKYNLQPNL--SDEEVLDYYLFAKGGKSLGEFVEKAI 93
Query: 59 KLFDLIHVLTTDHATVTRITQEVVEDFASENIVYLELRTTP-----KRNESIGMSKRSYM 113
K+ D+ H D+ + + + V + E +V +E R +P K N I + +
Sbjct: 94 KVADIFH----DYEVIEDLAKHAVFNKYKEGVVLMEFRYSPTFVAFKYNLDIELIHQ--- 146
Query: 114 DAVVEGLRAV 123
A+V+G++ V
Sbjct: 147 -AIVKGIKEV 155
>pdb|2PGF|A Chain A, Crystal Structure Of Adenosine Deaminase From Plasmodium
Vivax In Complex With Adenosine
pdb|2PGR|A Chain A, Crystal Structure Of Adenosine Deaminase From Plasmodium
Vivax In Complex With Pentostatin
pdb|2QVN|A Chain A, Crystal Structure Of Adenosine Deaminase From Plasmodium
Vivax In Complex With Guanosine
Length = 371
Score = 28.5 bits (62), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 55/130 (42%), Gaps = 23/130 (17%)
Query: 7 MPKVELHAHLNGSIRDSTLLELARVLGEKGVIVFSDVE----HVIMKSDRSLHE----VF 58
+PK ELH HL+ + R + + SD E ++ K +SL E
Sbjct: 44 IPKCELHCHLDLCFSADFFVSCIRKYNLQPNL--SDEEVLDYYLFAKGGKSLGEFVEKAI 101
Query: 59 KLFDLIHVLTTDHATVTRITQEVVEDFASENIVYLELRTTP-----KRNESIGMSKRSYM 113
K+ D+ H D+ + + + V + E +V E R +P K N I + +
Sbjct: 102 KVADIFH----DYEVIEDLAKHAVFNKYKEGVVLXEFRYSPTFVAFKYNLDIELIHQ--- 154
Query: 114 DAVVEGLRAV 123
A+V+G++ V
Sbjct: 155 -AIVKGIKEV 163
>pdb|2Z3T|A Chain A, Crystal Structure Of Substrate Free Cytochrome P450 Stap
(cyp245a1)
pdb|2Z3T|B Chain B, Crystal Structure Of Substrate Free Cytochrome P450 Stap
(cyp245a1)
pdb|2Z3T|C Chain C, Crystal Structure Of Substrate Free Cytochrome P450 Stap
(cyp245a1)
pdb|2Z3T|D Chain D, Crystal Structure Of Substrate Free Cytochrome P450 Stap
(cyp245a1)
pdb|2Z3U|A Chain A, Crystal Structure Of Chromopyrrolic Acid Bound Cytochrome
P450 Stap (Cyp245a1)
pdb|3A1L|A Chain A, Crystal Structure Of 11,11'-Dichlorochromopyrrolic Acid
Bound Cytochrome P450 Stap (Cyp245a1)
Length = 425
Score = 26.9 bits (58), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 19/37 (51%)
Query: 64 IHVLTTDHATVTRITQEVVEDFASENIVYLELRTTPK 100
+H+LT H T T + V + V ELRTTP+
Sbjct: 249 VHLLTAGHETTTNFLAKAVLTLRAHRDVLDELRTTPE 285
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.375
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,634,052
Number of Sequences: 62578
Number of extensions: 197620
Number of successful extensions: 521
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 490
Number of HSP's gapped (non-prelim): 22
length of query: 213
length of database: 14,973,337
effective HSP length: 95
effective length of query: 118
effective length of database: 9,028,427
effective search space: 1065354386
effective search space used: 1065354386
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)