Query 028114
Match_columns 213
No_of_seqs 129 out of 1216
Neff 7.6
Searched_HMMs 46136
Date Fri Mar 29 06:27:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028114.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028114hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00124 adenosine deaminase; 100.0 2.5E-38 5.4E-43 280.2 19.7 178 2-212 30-213 (362)
2 KOG1097 Adenine deaminase/aden 100.0 9E-35 2E-39 255.2 17.6 179 2-212 41-234 (399)
3 cd01321 ADGF Adenosine deamina 100.0 1.2E-34 2.6E-39 255.8 16.8 161 1-212 18-186 (345)
4 cd00443 ADA_AMPD Adenosine/AMP 100.0 1.2E-33 2.5E-38 245.8 17.5 152 7-212 1-160 (305)
5 PF00962 A_deaminase: Adenosin 100.0 4.6E-32 1E-36 237.4 17.7 174 7-212 2-187 (331)
6 PRK09358 adenosine deaminase; 100.0 5.2E-31 1.1E-35 232.0 19.8 179 1-211 4-188 (340)
7 TIGR01430 aden_deam adenosine 100.0 1.3E-29 2.8E-34 221.8 20.7 173 7-211 1-178 (324)
8 COG1816 Add Adenosine deaminas 100.0 2E-30 4.4E-35 226.8 15.4 179 2-212 6-192 (345)
9 cd01320 ADA Adenosine deaminas 100.0 5.8E-28 1.3E-32 211.1 20.4 174 6-211 1-179 (325)
10 TIGR01431 adm_rel adenosine de 100.0 5.8E-28 1.3E-32 220.8 15.8 182 2-212 72-313 (479)
11 TIGR01224 hutI imidazoloneprop 98.1 0.00018 3.9E-09 63.9 15.2 106 69-210 88-202 (377)
12 cd01319 AMPD AMP deaminase (AM 97.2 0.004 8.7E-08 57.8 11.0 96 4-100 55-190 (496)
13 cd01296 Imidazolone-5PH Imidaz 97.1 0.02 4.2E-07 50.7 14.2 50 68-124 84-133 (371)
14 PRK09230 cytosine deaminase; P 97.0 0.0029 6.3E-08 57.7 8.2 53 66-124 92-144 (426)
15 KOG1096 Adenosine monophosphat 96.8 0.0041 8.8E-08 58.9 7.3 97 5-102 315-451 (768)
16 PLN02768 AMP deaminase 96.7 0.014 3.1E-07 56.7 10.3 92 6-100 380-513 (835)
17 TIGR01429 AMP_deaminase AMP de 96.4 0.012 2.6E-07 55.8 8.0 94 6-100 168-301 (611)
18 PLN03055 AMP deaminase; Provis 96.3 0.04 8.7E-07 52.2 10.4 94 6-100 147-280 (602)
19 PTZ00310 AMP deaminase; Provis 96.0 0.018 3.9E-07 59.0 7.0 100 6-111 843-981 (1453)
20 PRK08393 N-ethylammeline chlor 86.3 5.2 0.00011 36.3 9.0 44 53-96 76-120 (424)
21 cd01292 metallo-dependent_hydr 84.9 17 0.00037 29.4 10.8 36 66-101 25-60 (275)
22 smart00148 PLCXc Phospholipase 78.3 26 0.00056 26.7 8.9 22 79-100 31-52 (135)
23 PRK09356 imidazolonepropionase 76.2 57 0.0012 29.1 12.1 29 69-97 113-141 (406)
24 PF02811 PHP: PHP domain; Int 67.4 6.2 0.00013 30.3 3.1 26 10-38 1-31 (175)
25 TIGR01434 glu_cys_ligase gluta 66.3 10 0.00022 35.6 4.8 37 81-117 310-349 (512)
26 PRK02107 glutamate--cysteine l 65.5 11 0.00024 35.6 4.8 36 81-116 314-352 (523)
27 PF04262 Glu_cys_ligase: Gluta 62.3 7.3 0.00016 35.2 2.9 31 80-110 310-341 (377)
28 cd01298 ATZ_TRZ_like TRZ/ATZ f 59.9 15 0.00032 32.5 4.5 38 54-91 79-116 (411)
29 smart00481 POLIIIAc DNA polyme 56.6 13 0.00027 24.3 2.7 26 11-39 1-31 (67)
30 COG0613 Predicted metal-depend 56.0 12 0.00025 32.0 3.0 27 9-38 3-32 (258)
31 cd07948 DRE_TIM_HCS Saccharomy 54.3 1.4E+02 0.003 25.4 10.5 88 80-198 75-166 (262)
32 PRK06740 histidinol-phosphatas 51.9 25 0.00055 31.0 4.6 76 9-93 2-78 (331)
33 cd01293 Bact_CD Bacterial cyto 51.0 18 0.00039 31.7 3.5 32 68-99 88-119 (398)
34 PRK07135 dnaE DNA polymerase I 50.4 14 0.00031 37.5 3.0 25 7-31 1-30 (973)
35 TIGR01435 glu_cys_lig_rel glut 48.7 22 0.00048 35.0 3.9 37 81-117 259-298 (737)
36 PRK06886 hypothetical protein; 48.7 1.9E+02 0.0042 25.5 9.7 70 10-99 23-92 (329)
37 cd00137 PI-PLCc Catalytic doma 47.6 76 0.0016 27.2 6.7 21 79-99 37-57 (274)
38 PF00388 PI-PLC-X: Phosphatidy 45.2 53 0.0011 25.0 4.9 19 80-98 30-48 (146)
39 COG2918 GshA Gamma-glutamylcys 45.0 32 0.00069 31.9 4.1 33 80-112 314-347 (518)
40 cd08619 PI-PLCXDc_plant Cataly 42.2 36 0.00078 29.6 3.9 49 80-128 60-108 (285)
41 TIGR02090 LEU1_arch isopropylm 41.8 2.6E+02 0.0055 25.0 10.1 90 79-199 74-167 (363)
42 PTZ00310 AMP deaminase; Provis 41.7 18 0.00038 38.1 2.2 28 4-31 202-229 (1453)
43 cd08207 RLP_NonPhot Ribulose b 41.4 2.5E+02 0.0055 25.7 9.4 94 53-186 133-236 (406)
44 cd08209 RLP_DK-MTP-1-P-enolase 39.0 2.6E+02 0.0057 25.4 9.1 94 53-186 114-217 (391)
45 PRK13361 molybdenum cofactor b 38.0 1.7E+02 0.0036 25.5 7.6 127 19-185 44-182 (329)
46 COG0854 PdxJ Pyridoxal phospha 36.7 2.6E+02 0.0057 23.6 8.1 84 10-103 62-159 (243)
47 cd07939 DRE_TIM_NifV Streptomy 35.2 2.7E+02 0.0058 23.3 9.0 89 81-199 74-165 (259)
48 TIGR03326 rubisco_III ribulose 34.3 3.7E+02 0.008 24.7 9.4 105 53-197 134-249 (412)
49 PRK06380 metal-dependent hydro 34.1 87 0.0019 28.1 5.3 14 7-20 53-67 (418)
50 PRK06687 chlorohydrolase; Vali 34.1 3.4E+02 0.0075 24.2 11.8 15 7-21 57-72 (419)
51 cd08557 PI-PLCc_bacteria_like 32.0 57 0.0012 27.2 3.5 21 81-101 42-62 (271)
52 COG4464 CapC Capsular polysacc 31.9 42 0.00092 28.2 2.6 29 10-38 2-35 (254)
53 PRK05672 dnaE2 error-prone DNA 30.9 43 0.00094 34.4 3.0 24 9-32 5-33 (1046)
54 PF09999 DUF2240: Uncharacteri 30.5 1.1E+02 0.0023 23.9 4.5 40 160-199 23-69 (144)
55 PF13918 PLDc_3: PLD-like doma 30.2 65 0.0014 26.0 3.4 56 87-174 94-150 (177)
56 PRK11858 aksA trans-homoaconit 29.9 4.1E+02 0.0089 23.8 9.5 90 79-199 78-171 (378)
57 cd08208 RLP_Photo Ribulose bis 29.4 4.4E+02 0.0096 24.3 9.0 78 69-186 173-253 (424)
58 TIGR00193 urease_gam urease, g 28.9 15 0.00033 26.8 -0.5 53 67-124 29-81 (102)
59 TIGR02635 RhaI_grampos L-rhamn 28.6 4.5E+02 0.0097 23.8 10.8 103 7-124 56-164 (378)
60 TIGR03583 EF_0837 probable ami 28.3 27 0.00059 30.8 1.0 30 6-38 48-80 (365)
61 cd01295 AdeC Adenine deaminase 27.9 56 0.0012 29.6 3.0 30 6-38 7-38 (422)
62 PRK07572 cytosine deaminase; V 27.7 56 0.0012 29.6 2.9 28 69-96 91-118 (426)
63 CHL00040 rbcL ribulose-1,5-bis 27.5 4.9E+02 0.011 24.4 9.0 94 53-186 157-261 (475)
64 cd03174 DRE_TIM_metallolyase D 27.0 3.6E+02 0.0077 22.2 10.2 91 79-199 77-172 (265)
65 PRK07583 cytosine deaminase-li 26.5 2.1E+02 0.0045 26.0 6.4 14 7-20 74-88 (438)
66 COG1619 LdcA Uncharacterized p 26.4 4.4E+02 0.0096 23.2 8.1 84 75-193 25-109 (313)
67 cd08616 PI-PLCXD1c Catalytic d 25.9 1.2E+02 0.0026 26.2 4.5 47 81-128 63-114 (290)
68 PRK02471 bifunctional glutamat 25.2 1.1E+02 0.0024 30.2 4.6 61 51-111 235-302 (752)
69 PRK06038 N-ethylammeline chlor 24.9 1.6E+02 0.0036 26.6 5.4 13 7-19 54-67 (430)
70 PF07615 Ykof: YKOF-related Fa 24.5 2.4E+02 0.0053 19.4 5.5 49 72-124 14-62 (81)
71 PF13594 Amidohydro_5: Amidohy 24.3 24 0.00052 23.1 -0.1 11 7-17 33-44 (68)
72 TIGR00857 pyrC_multi dihydroor 24.0 68 0.0015 28.9 2.8 33 6-38 37-72 (411)
73 COG3360 Uncharacterized conser 24.0 1.1E+02 0.0024 20.8 3.0 29 69-97 14-44 (71)
74 TIGR00010 hydrolase, TatD fami 23.9 72 0.0016 26.0 2.7 25 10-37 2-29 (252)
75 cd08148 RuBisCO_large Ribulose 23.6 5.5E+02 0.012 23.2 9.1 95 52-186 116-220 (366)
76 PRK00164 moaA molybdenum cofac 23.5 4.4E+02 0.0095 22.7 7.7 27 159-185 160-186 (331)
77 TIGR03332 salvage_mtnW 2,3-dik 23.4 5E+02 0.011 23.8 8.2 95 52-186 128-232 (407)
78 PRK09532 DNA polymerase III su 23.3 71 0.0015 32.2 2.9 26 7-32 1-31 (874)
79 PLN02610 probable methionyl-tR 23.2 70 0.0015 31.9 2.8 27 70-96 111-137 (801)
80 cd01294 DHOase Dihydroorotase 22.9 71 0.0015 27.8 2.6 28 6-36 2-30 (335)
81 PRK09248 putative hydrolase; V 22.6 1.1E+02 0.0024 25.4 3.6 27 9-38 4-34 (246)
82 COG1099 Predicted metal-depend 22.5 4E+02 0.0087 22.7 6.7 48 155-203 61-110 (254)
83 cd08206 RuBisCO_large_I_II_III 22.4 6.1E+02 0.013 23.3 9.4 95 52-186 121-226 (414)
84 PRK00912 ribonuclease P protei 22.1 1E+02 0.0022 25.5 3.3 25 7-31 1-27 (237)
85 PRK00448 polC DNA polymerase I 22.1 83 0.0018 33.6 3.2 23 10-32 335-362 (1437)
86 cd08210 RLP_RrRLP Ribulose bis 21.7 5.9E+02 0.013 22.8 9.0 94 53-186 116-218 (364)
87 PLN02746 hydroxymethylglutaryl 21.5 5.9E+02 0.013 22.7 9.7 85 82-197 127-221 (347)
88 PRK13242 ureA urease subunit g 21.4 25 0.00054 25.6 -0.5 53 67-124 29-81 (100)
89 PF00465 Fe-ADH: Iron-containi 21.4 4.3E+02 0.0094 23.2 7.3 38 157-194 49-86 (366)
90 TIGR01405 polC_Gram_pos DNA po 21.4 89 0.0019 32.8 3.2 24 9-32 104-132 (1213)
91 PRK13241 ureA urease subunit g 21.3 27 0.00058 25.5 -0.4 53 67-124 29-81 (100)
92 PRK08203 hydroxydechloroatrazi 21.2 1.8E+02 0.0039 26.4 5.0 15 7-21 58-73 (451)
93 COG0587 DnaE DNA polymerase II 21.2 91 0.002 32.5 3.2 24 9-32 4-32 (1139)
94 cd08213 RuBisCO_large_III Ribu 21.0 6.5E+02 0.014 23.1 9.3 94 53-186 121-224 (412)
95 PRK06920 dnaE DNA polymerase I 21.0 95 0.0021 32.2 3.3 26 7-32 1-31 (1107)
96 cd00390 Urease_gamma Urease ga 20.7 27 0.00059 25.3 -0.4 52 67-123 26-77 (96)
97 cd00854 NagA N-acetylglucosami 20.6 1.1E+02 0.0023 27.3 3.3 33 6-38 49-87 (374)
98 PRK09549 mtnW 2,3-diketo-5-met 20.5 6.7E+02 0.015 23.0 9.3 94 53-186 124-227 (407)
99 PRK09357 pyrC dihydroorotase; 20.4 65 0.0014 28.9 1.9 33 6-38 51-86 (423)
No 1
>PTZ00124 adenosine deaminase; Provisional
Probab=100.00 E-value=2.5e-38 Score=280.23 Aligned_cols=178 Identities=21% Similarity=0.245 Sum_probs=154.7
Q ss_pred hhhhcCCceeeccccCCCCCHHHHHHHHHHhccCCCCCchhhhHHH-----hcCCCCHHHHHHhhHHHHHhcCCHHHHHH
Q 028114 2 EWFASMPKVELHAHLNGSIRDSTLLELARVLGEKGVIVFSDVEHVI-----MKSDRSLHEVFKLFDLIHVLTTDHATVTR 76 (213)
Q Consensus 2 ~~l~~lPK~eLH~HL~Gsi~~~tl~~la~~~~~~g~~~~~~~~~~~-----~~~~~~l~~F~~~f~~~~~ll~~~~~~~~ 76 (213)
.|+++|||+|||+||+||++|+|+++||++ +|+.++.+.+++. ...+.+|.+||++|..+..++++++++++
T Consensus 30 ~~~~~lPKvELH~HLdGsi~~~tl~~La~~---~~~~~~~~~~~l~~~~~~~~~~~~L~~fl~~f~~~~~vl~t~~dl~r 106 (362)
T PTZ00124 30 KIWKRIPKCELHCHLDLCFSVDFFLSCIRK---YNLQPNLSDEEILDYYLFAKGGKSLGEFVEKAIRVADIFNDYEVIED 106 (362)
T ss_pred HHHhcCCceeEeecccCCCCHHHHHHHHHH---cCCCCCCCHHHHHHHHhcccCCCCHHHHHHHHHHHHHHhCCHHHHHH
Confidence 588999999999999999999999999985 6776544444332 13467999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCeEEEEeeCcCcc-ccCCCCHHHHHHHHHHHHHhhhhhcccccccccccccccccccccccccCCCC
Q 028114 77 ITQEVVEDFASENIVYLELRTTPKRN-ESIGMSKRSYMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKNMNDACNGTRG 155 (213)
Q Consensus 77 ~~~~~~~~~a~dnV~Y~Elr~~P~~~-~~~~~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (213)
+++++++++++|||+|+|+|++|... ...|++.+++++++.+|++++.++ .+
T Consensus 107 ~a~e~~~d~~~dgV~Y~Eir~~P~~~~~~~gl~~~~vv~av~~g~~~a~~~---------------------------~~ 159 (362)
T PTZ00124 107 LAKHAVFNKYKEGVVLMEFRYSPTFVAFKHNLDIDLIHQAIVKGIKEAVEL---------------------------LD 159 (362)
T ss_pred HHHHHHHHHHHcCCEEEEEEcCchhhhcCCCCCHHHHHHHHHHHHHHHHhc---------------------------cC
Confidence 99999999999999999999999764 457999999999999999988541 25
Q ss_pred CCcEEEEEEEEeCCCCHHHHHHHHHHHHhhCCCCeEEEecCCCCCCCCccchhhccC
Q 028114 156 KKIYVRLLLSIDRRETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWYSFVTDHS 212 (213)
Q Consensus 156 ~~i~vrlI~~~~R~~~~~~~~~~~~~a~~~~~~~vvG~dL~G~E~~~~~~~f~~~~~ 212 (213)
+||.+|+|+|++|+.+++.+.+++++|.++++. ||||||+|+|... ..|.++|.
T Consensus 160 ~gI~~~lI~~~~R~~~~e~a~e~~~~a~~~~~~-vvGiDLaG~E~~~--~~f~~~f~ 213 (362)
T PTZ00124 160 HKIEVGLLCIGDTGHDAAPIKESADFCLKHKAD-FVGFDHAGHEVDL--KPFKDIFD 213 (362)
T ss_pred CCceEeEEEEecCCCCHHHHHHHHHHHHhccCC-eEEEeccCCCCCc--HHHHHHHH
Confidence 799999999999999999999999999998774 9999999999843 55777663
No 2
>KOG1097 consensus Adenine deaminase/adenosine deaminase [Nucleotide transport and metabolism]
Probab=100.00 E-value=9e-35 Score=255.20 Aligned_cols=179 Identities=30% Similarity=0.431 Sum_probs=156.4
Q ss_pred hhhhcC-CceeeccccCCCCCHHHHHHHHHHhccCCCCCc-----hhhhHHHhcC-CC-CHHHHHH-hhHHHHHhcCCHH
Q 028114 2 EWFASM-PKVELHAHLNGSIRDSTLLELARVLGEKGVIVF-----SDVEHVIMKS-DR-SLHEVFK-LFDLIHVLTTDHA 72 (213)
Q Consensus 2 ~~l~~l-PK~eLH~HL~Gsi~~~tl~~la~~~~~~g~~~~-----~~~~~~~~~~-~~-~l~~F~~-~f~~~~~ll~~~~ 72 (213)
+||+.| ||+|||.||+||+++++++.|+.+ +|++.+ .+++.++.+. .. .+.+|++ .|..+.+++.+++
T Consensus 41 ~~l~~l~pk~eLHaHl~Gsls~~~l~~L~~r---~~~~~p~~~~~~~~~~~l~~~~~~~~l~~f~~~~f~~l~~ll~~~~ 117 (399)
T KOG1097|consen 41 NFLQKLPPKVELHAHLTGSLSPDLLLDLTYR---FGIPLPKARTAEELEKVLERYKPLYPLADFLDNIFYLLHGLLIYAP 117 (399)
T ss_pred HHHHhCCCCeEEEeeccccccHHHHHHHHHh---cCCCCcccccHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHH
Confidence 689999 889999999999999999999996 676554 3445554432 22 4999999 8889999999999
Q ss_pred HHHHHHHHHHHHHHhCCCeEEEEe-eCcCccccCC-CCHHHHHHHHHHHHHhhhhhcccccccccccccccccccccccc
Q 028114 73 TVTRITQEVVEDFASENIVYLELR-TTPKRNESIG-MSKRSYMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKNMNDAC 150 (213)
Q Consensus 73 ~~~~~~~~~~~~~a~dnV~Y~Elr-~~P~~~~~~~-~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (213)
+|++++|++++++++|||+|+|+| +.|+.+...| ++++++++.+.++++++++
T Consensus 118 ~~~~~~y~~~eef~~dgVvY~E~Rt~~p~l~~~~G~~t~e~~v~~~~~~~e~~~~------------------------- 172 (399)
T KOG1097|consen 118 AFRDYAYEALEEFAEDGVVYLEVRTYPPQLYTADGDITPEDVVAIVIAALEKAKR------------------------- 172 (399)
T ss_pred HHHHHHHHHHHHHHHcCceEEEEEccCchhhhcCCCCCHHHHHHHHHHHHHHHHH-------------------------
Confidence 999999999999999999999999 6688887777 9999999999999999975
Q ss_pred cCCCCCCcEEEEEEEEeCCCCHHHHHHHHHHHHhh---CCCCeEEEecCCCC-CCCCccchhhccC
Q 028114 151 NGTRGKKIYVRLLLSIDRRETTEAAMETVKLALEM---RDLGVVGIDLSGNP-TKGEWYSFVTDHS 212 (213)
Q Consensus 151 ~~~~~~~i~vrlI~~~~R~~~~~~~~~~~~~a~~~---~~~~vvG~dL~G~E-~~~~~~~f~~~~~ 212 (213)
++||++|+|+|++|+.+++.+.+++..+.+. ++..||||||+|+| .++|+.+|++++.
T Consensus 173 ----~fpI~sklI~~~~R~~~~e~~~e~v~~~~~~~~~~~~~VvGidL~G~e~~~~p~~~f~~vl~ 234 (399)
T KOG1097|consen 173 ----DFPIKSKLIMCCIRHMPPEVAEETVSEAKELNKLFPNFVVGIDLVGQEDLGGPLSLFLEVLA 234 (399)
T ss_pred ----hCCCcceEEEeeccCCChHHHHHHHHHHHHHHHhCCCeEEEEecCCCCCCCCChhhhHHHHH
Confidence 6789999999999999999999999888763 46789999999999 5667799999875
No 3
>cd01321 ADGF Adenosine deaminase-related growth factors (ADGF), a novel family of secreted growth-factors with sequence similarty to adenosine deaminase.
Probab=100.00 E-value=1.2e-34 Score=255.78 Aligned_cols=161 Identities=18% Similarity=0.256 Sum_probs=143.8
Q ss_pred ChhhhcCCc-eeeccccCCCCCHHHHHHHHHHhccCCCCCchhhhHHHhcCCCCHHHHHHhhHHHHHhcCCHHHHHHHHH
Q 028114 1 MEWFASMPK-VELHAHLNGSIRDSTLLELARVLGEKGVIVFSDVEHVIMKSDRSLHEVFKLFDLIHVLTTDHATVTRITQ 79 (213)
Q Consensus 1 ~~~l~~lPK-~eLH~HL~Gsi~~~tl~~la~~~~~~g~~~~~~~~~~~~~~~~~l~~F~~~f~~~~~ll~~~~~~~~~~~ 79 (213)
++|++.||| +|||+||+||++++|+++||++ +|+++|..+..+++++++++++++
T Consensus 18 ~~~~~~lPK~~eLH~Hl~Gsi~~~tl~~la~~------------------------~fl~~f~~~~~~l~~~~~~~~~~~ 73 (345)
T cd01321 18 FKIIQKMPKGALLHVHDTAMVSSDWLIKNATY------------------------RFEQIFDIIDGLLTYLPIFRDYYR 73 (345)
T ss_pred HHHHHhCCChHhhccCccccCCHHHHHHHHHH------------------------HHHHHHHHHHHHhcCHHHHHHHHH
Confidence 368899999 8999999999999999999982 799999999999999999999999
Q ss_pred HHHHHHHhCCCeEEEEeeCcCc-c--ccCCCCHHHHHHHHHHHHHhhhhhcccccccccccccccccccccccccCCCCC
Q 028114 80 EVVEDFASENIVYLELRTTPKR-N--ESIGMSKRSYMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKNMNDACNGTRGK 156 (213)
Q Consensus 80 ~~~~~~a~dnV~Y~Elr~~P~~-~--~~~~~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (213)
++++++++|||+|+|+|++|.. + ...|++.+++++++.++++.+.+.+ ++
T Consensus 74 ~~~~d~~~dgV~Y~Eir~~P~~~~~~~~~g~~~~~v~~av~~~~~~~~~~~--------------------------~~- 126 (345)
T cd01321 74 RLLEELYEDNVQYVELRSSFSPLYDLDGREYDYEETVQLLEEVVEKFKKTH--------------------------PD- 126 (345)
T ss_pred HHHHHHHHcCCEEEEEeecchHHHHccCCCCCHHHHHHHHHHHHHHHHHhC--------------------------CC-
Confidence 9999999999999999999975 3 3478999999999999998876522 23
Q ss_pred CcEEEEEEEEeCCCCHHHHHHHHHHHHhhC---CCCeEEEecCCCCC-CCCccchhhccC
Q 028114 157 KIYVRLLLSIDRRETTEAAMETVKLALEMR---DLGVVGIDLSGNPT-KGEWYSFVTDHS 212 (213)
Q Consensus 157 ~i~vrlI~~~~R~~~~~~~~~~~~~a~~~~---~~~vvG~dL~G~E~-~~~~~~f~~~~~ 212 (213)
||++|+|+|++|+.+++.+.+++++|.+++ ++.||||||+|+|. +.++.+|+++|.
T Consensus 127 ~i~v~lI~~~~R~~~~e~~~e~~~~a~~~~~~~~~~VvGidL~G~E~~~~~~~~f~~~f~ 186 (345)
T cd01321 127 FIGLKIIYATLRNFNDSEIKESMEQCLNLKKKFPDFIAGFDLVGQEDAGRPLLDFLPQLL 186 (345)
T ss_pred CceEEEEEEecCCCCHHHHHHHHHHHHHHHHhCCCeEEEEecCCCccCCCCHHHHHHHHH
Confidence 899999999999999999999999999873 44699999999995 557799998874
No 4
>cd00443 ADA_AMPD Adenosine/AMP deaminase. Adenosine deaminases (ADAs) are present in pro- and eukaryotic organisms and catalyze the zinc dependent irreversible deamination of adenosine nucleosides to inosine nucleosides and ammonia. The eukaryotic AMP deaminase catalyzes a similar reaction leading to the hydrolytic removal of an amino group at the 6 position of the adenine nucleotide ring, a branch point in the adenylate catabolic pathway.
Probab=100.00 E-value=1.2e-33 Score=245.83 Aligned_cols=152 Identities=45% Similarity=0.645 Sum_probs=140.5
Q ss_pred CCceeeccccCCCCCHHHHHHHHHHhccCCCCCchhhhHHHhcCCCCHHHHHHhhHHHHHhcCCHHHHHHHHHHHHHHHH
Q 028114 7 MPKVELHAHLNGSIRDSTLLELARVLGEKGVIVFSDVEHVIMKSDRSLHEVFKLFDLIHVLTTDHATVTRITQEVVEDFA 86 (213)
Q Consensus 7 lPK~eLH~HL~Gsi~~~tl~~la~~~~~~g~~~~~~~~~~~~~~~~~l~~F~~~f~~~~~ll~~~~~~~~~~~~~~~~~a 86 (213)
|||+|||+||+||++|+|+++|+++ +|++.|..+.+++++++++++++++++++++
T Consensus 1 lPK~eLH~Hl~Gsi~~~~l~~l~~~------------------------~f~~~f~~~~~~l~~~~~l~~~~~~~~~~~~ 56 (305)
T cd00443 1 LPKVELHAHLSGSISPETLLELIKK------------------------EFFEKFLLVHNLLQKGEALARALKEVIEEFA 56 (305)
T ss_pred CCceeEEecCcCCCCHHHHHHHHHH------------------------HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 7999999999999999999999982 7999999999999999999999999999999
Q ss_pred hCCCeEEEEeeCcCccccC-CCCHHHHHHHHHHHHHhhhhhcccccccccccccccccccccccccCCCCCC-cEEEEEE
Q 028114 87 SENIVYLELRTTPKRNESI-GMSKRSYMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKNMNDACNGTRGKK-IYVRLLL 164 (213)
Q Consensus 87 ~dnV~Y~Elr~~P~~~~~~-~~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~vrlI~ 164 (213)
+|||+|+|+|++|..+... +++.+++++++.++++++.+ .++ |++|+|+
T Consensus 57 ~d~V~Y~E~r~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------------~~~~I~~~lI~ 107 (305)
T cd00443 57 EDNVQYLELRTTPRLLETEKGLTKEQYWLLVIEGISEAKQ-----------------------------WFPPIKVRLIL 107 (305)
T ss_pred HcCCEEEEEEcchhhcCcccCCCHHHHHHHHHHHHHHHHH-----------------------------HcCCeeEeEEE
Confidence 9999999999999887666 99999999999999998864 345 9999999
Q ss_pred EEeCCCCHH----HHHHHHHHHHhhCCCCeEEEecCCCCCCC--CccchhhccC
Q 028114 165 SIDRRETTE----AAMETVKLALEMRDLGVVGIDLSGNPTKG--EWYSFVTDHS 212 (213)
Q Consensus 165 ~~~R~~~~~----~~~~~~~~a~~~~~~~vvG~dL~G~E~~~--~~~~f~~~~~ 212 (213)
|++|+.+++ .+.++++++..+++ .||||||+|+|..+ ++..|.++|.
T Consensus 108 ~~~R~~~~~~~~~~~~~~~~l~~~~~~-~vvG~Dl~g~E~~~~~~~~~f~~~~~ 160 (305)
T cd00443 108 SVDRRGPYVQNYLVASEILELAKFLSN-YVVGIDLVGDESKGENPLRDFYSYYE 160 (305)
T ss_pred EEeCCCChhhhhhhHHHHHHHHHHhcC-CEEEEEcCCCCCCCCCCHHHHHHHHH
Confidence 999999999 99999999998766 69999999999988 8888988774
No 5
>PF00962 A_deaminase: Adenosine/AMP deaminase immunodeficiency disease (SCID); InterPro: IPR001365 Adenosine deaminase (3.5.4.4 from EC) catalyzes the hydrolytic deamination of adenosine into inosine and AMP deaminase (3.5.4.6 from EC) catalyzes the hydrolytic deamination of AMP into IMP. It has been shown [] that these two enzymes share three regions of sequence similarities; these regions are centred on residues which are proposed to play an important role in the catalytic mechanism of these two enzymes.; GO: 0019239 deaminase activity, 0009168 purine ribonucleoside monophosphate biosynthetic process; PDB: 3LGG_B 3LGD_B 2AMX_B 3EWD_A 2QVN_A 2PGF_A 2PGR_A 3EWC_A 1W1I_G 1O5R_A ....
Probab=100.00 E-value=4.6e-32 Score=237.40 Aligned_cols=174 Identities=39% Similarity=0.580 Sum_probs=150.6
Q ss_pred CCceeeccccCCCCCHHHHHHHHHHhccCCCC-Cc-hhhh----HH-HhcCCCCHHHHHHhhHHHHHhcC---CHHHHHH
Q 028114 7 MPKVELHAHLNGSIRDSTLLELARVLGEKGVI-VF-SDVE----HV-IMKSDRSLHEVFKLFDLIHVLTT---DHATVTR 76 (213)
Q Consensus 7 lPK~eLH~HL~Gsi~~~tl~~la~~~~~~g~~-~~-~~~~----~~-~~~~~~~l~~F~~~f~~~~~ll~---~~~~~~~ 76 (213)
+||+|||+||+||++++|+++++++ +++. ++ .... .. ......+|.+|+..|..+..+++ +++++++
T Consensus 2 ~pK~eLH~HL~Gsi~~~~l~ela~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~ 78 (331)
T PF00962_consen 2 LPKAELHIHLDGSISPETLLELAKK---NNICELPADTDEELEKHLTRPENFRSLNEFLELFDIISSVLQADRTPEDLRR 78 (331)
T ss_dssp S-EEEEEEEGGGSS-HHHHHHHHHH---CTCC-TTSCSSHHHHHHHHCTSSCSSHHHHHHHHHHHHHHHTCSTSHHHHHH
T ss_pred CCEEEeeeCCccCCCHHHHHHHHHh---CCCCccccccchhhhhHHhhhhhcccHHHHHHHHHHhhhhhhhcccHHHHHH
Confidence 7999999999999999999999996 5554 21 1111 11 13457899999999999999999 9999999
Q ss_pred HHHHHHHHHHhCCCeEEEEeeCcCccccCC--CCHHHHHHHHHHHHHhhhhhcccccccccccccccccccccccccCCC
Q 028114 77 ITQEVVEDFASENIVYLELRTTPKRNESIG--MSKRSYMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKNMNDACNGTR 154 (213)
Q Consensus 77 ~~~~~~~~~a~dnV~Y~Elr~~P~~~~~~~--~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (213)
+++++++++++|||+|+|+|++|..+...+ ++.+++++++.++++++.+
T Consensus 79 ~~~~~l~~~~~dnV~YlElr~~P~~~~~~~~~~~~~~~~~~i~~~~~~a~~----------------------------- 129 (331)
T PF00962_consen 79 YAYEVLEDFAEDNVVYLELRFSPQFHAQLGGNLSFDEVVEAIIEGIDRAEK----------------------------- 129 (331)
T ss_dssp HHHHHHHHHHHTTEEEEEEEESHHHHHTTTCSSTHHHHHHHHHHHHHHHHH-----------------------------
T ss_pred HHHHHHHHHHHcCCeEEEEEeccccccccCCCCCHHHHHHHHHhhhhhccc-----------------------------
Confidence 999999999999999999999998875544 8999999999999999865
Q ss_pred CCCcEEEEEEEEeCCCCHHHHHHHHHHHHhhCCCCeEEEecCCCCCCCCccchhhccC
Q 028114 155 GKKIYVRLLLSIDRRETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWYSFVTDHS 212 (213)
Q Consensus 155 ~~~i~vrlI~~~~R~~~~~~~~~~~~~a~~~~~~~vvG~dL~G~E~~~~~~~f~~~~~ 212 (213)
+++|++|+|++..|+.+++.+.+.++++.++++..||||||+|+|..+++..|.++|.
T Consensus 130 ~~~i~~~li~~~~R~~~~~~~~~~~~~~~~~~~~~vvG~dl~g~E~~~~~~~~~~~~~ 187 (331)
T PF00962_consen 130 EFGIKVRLIISVLRHFPDEWAEEIVELASKYPDKGVVGFDLAGDEDGGPPLKFAPAFR 187 (331)
T ss_dssp HHTTEEEEEEEEETTSTHHHHHHHHHHHHHTTTTTEEEEEEESSTTSTTGGGHHHHHH
T ss_pred cccccccccccccccchHHHHHHHHHHHhhcccceEEEEEecCCcccCchHHHHHHHh
Confidence 5679999999999999999999999999999888999999999999999988988764
No 6
>PRK09358 adenosine deaminase; Provisional
Probab=99.98 E-value=5.2e-31 Score=231.99 Aligned_cols=179 Identities=34% Similarity=0.479 Sum_probs=153.2
Q ss_pred ChhhhcCCceeeccccCCCCCHHHHHHHHHHhccCCCCCch-hhhHH---H-hcCCCCHHHHHHhhHHHHHhcCCHHHHH
Q 028114 1 MEWFASMPKVELHAHLNGSIRDSTLLELARVLGEKGVIVFS-DVEHV---I-MKSDRSLHEVFKLFDLIHVLTTDHATVT 75 (213)
Q Consensus 1 ~~~l~~lPK~eLH~HL~Gsi~~~tl~~la~~~~~~g~~~~~-~~~~~---~-~~~~~~l~~F~~~f~~~~~ll~~~~~~~ 75 (213)
++|+++|||+|||+||+||++++|+++|+++ +|+.++. +.+++ . .....+|.+|+..|.....++.|+++++
T Consensus 4 ~~~~~~lpK~eLH~Hl~Gs~~~~~l~~l~~~---~~~~~p~~~~~~~~~~r~~~~~~~l~~~l~~~~~~~~~~~t~ed~~ 80 (340)
T PRK09358 4 LMIIRSLPKAELHLHLDGSLRPETILELARR---NGIALPATDVEELPWVRAAYDFRDLQSFLDKYDAGVAVLQTEEDLR 80 (340)
T ss_pred hHHHhcCCceeEEecccCCCCHHHHHHHHHH---cCCCCCCCCHHHHhhhcccccCCCHHHHHHHHHHHHHHhCCHHHHH
Confidence 3689999999999999999999999999996 6776642 33444 2 2346789999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCeEEEEeeCcCccccCCCCHHHHHHHHHHHHHhhhhhcccccccccccccccccccccccccCCCC
Q 028114 76 RITQEVVEDFASENIVYLELRTTPKRNESIGMSKRSYMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKNMNDACNGTRG 155 (213)
Q Consensus 76 ~~~~~~~~~~a~dnV~Y~Elr~~P~~~~~~~~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (213)
+.++.++++++++||.|+|+|++|..+...|++.+++++++.++++++.+ +
T Consensus 81 ~~~~~~~~e~~~~Gvty~E~~~~p~~~~~~gl~~~~~~~a~~~~~~~a~~-----------------------------~ 131 (340)
T PRK09358 81 RLAFEYLEDAAADGVVYAEIRFDPQLHTERGLPLEEVVEAVLDGLRAAEA-----------------------------E 131 (340)
T ss_pred HHHHHHHHHHHHcCCEEEEEEeChhhhhhcCCCHHHHHHHHHHHHHHHHH-----------------------------h
Confidence 99999999999999999999999987767799999999999999988753 6
Q ss_pred CCcEEEEEEEEeCCCCHHHHHHHHHHHHh-hCCCCeEEEecCCCCCCCCccchhhcc
Q 028114 156 KKIYVRLLLSIDRRETTEAAMETVKLALE-MRDLGVVGIDLSGNPTKGEWYSFVTDH 211 (213)
Q Consensus 156 ~~i~vrlI~~~~R~~~~~~~~~~~~~a~~-~~~~~vvG~dL~G~E~~~~~~~f~~~~ 211 (213)
+||.+++|++++|+.+++.+.+.++.+.+ +.++.+||||++|+|..+++..|.++|
T Consensus 132 ~gi~~~li~~~~r~~~~~~~~~~~~~~~~~~~~~~vvg~~l~g~e~~~~~~~~~~~~ 188 (340)
T PRK09358 132 FGISVRLILCFMRHFGEEAAARELEALAARYRDDGVVGFDLAGDELGFPPSKFARAF 188 (340)
T ss_pred cCceEEEEEEecCCCCHHHHHHHHHHHHHHhcCCcEEEEeCCCcCCCCCHHHHHHHH
Confidence 79999999999999888888888776665 355679999999999877777777665
No 7
>TIGR01430 aden_deam adenosine deaminase. This family includes the experimentally verified adenosine deaminases of mammals and E. coli. Other members of this family are predicted also to be adenosine deaminase, an enzyme of nucleotide degradation. This family is distantly related to AMP deaminase.
Probab=99.97 E-value=1.3e-29 Score=221.76 Aligned_cols=173 Identities=32% Similarity=0.455 Sum_probs=150.1
Q ss_pred CCceeeccccCCCCCHHHHHHHHHHhccCCCCCch---hhhHHHh--cCCCCHHHHHHhhHHHHHhcCCHHHHHHHHHHH
Q 028114 7 MPKVELHAHLNGSIRDSTLLELARVLGEKGVIVFS---DVEHVIM--KSDRSLHEVFKLFDLIHVLTTDHATVTRITQEV 81 (213)
Q Consensus 7 lPK~eLH~HL~Gsi~~~tl~~la~~~~~~g~~~~~---~~~~~~~--~~~~~l~~F~~~f~~~~~ll~~~~~~~~~~~~~ 81 (213)
|||+|||+||+||++++|+++|+++ +|+.+++ +.+.+.. ..+.+|.+|++.|.++..++.|++++++.++.+
T Consensus 1 lpK~eLH~Hl~Gsi~~~~l~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~t~e~l~~~~~~~ 77 (324)
T TIGR01430 1 LPKAELHLHLEGSIRPETLLELAQK---NGIPLPADLQSGEELKEAYDKFRDLQDFLAKYDFGVEVLRTEDDFKRLAYEY 77 (324)
T ss_pred CCceeeEecccCCCCHHHHHHHHHH---cCCCCCCCcccHHHHHhhhccCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 7999999999999999999999996 6766543 3333332 226799999999999999999999999999999
Q ss_pred HHHHHhCCCeEEEEeeCcCccccCCCCHHHHHHHHHHHHHhhhhhcccccccccccccccccccccccccCCCCCCcEEE
Q 028114 82 VEDFASENIVYLELRTTPKRNESIGMSKRSYMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKNMNDACNGTRGKKIYVR 161 (213)
Q Consensus 82 ~~~~a~dnV~Y~Elr~~P~~~~~~~~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vr 161 (213)
+.+++++||.|+|+|++|..+...|++.+++++++.+++.++.. ++||.++
T Consensus 78 ~~e~~~~Gv~y~E~r~~p~~~~~~g~~~~~~~~~~~~~i~~a~~-----------------------------~~gi~~~ 128 (324)
T TIGR01430 78 VEKAAKDGVVYAEVFFDPQLHTNRGISPDTVVEAVLDGLDEAER-----------------------------DFGIKSR 128 (324)
T ss_pred HHHHHHcCCEEEEEEeCccccccCCCCHHHHHHHHHHHHHHHHH-----------------------------hcCCeEE
Confidence 99999999999999999987777899999999999999988753 6799999
Q ss_pred EEEEEeCCCCHHHHHHHHHHHHhhCCCCeEEEecCCCCCCCCccchhhcc
Q 028114 162 LLLSIDRRETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWYSFVTDH 211 (213)
Q Consensus 162 lI~~~~R~~~~~~~~~~~~~a~~~~~~~vvG~dL~G~E~~~~~~~f~~~~ 211 (213)
+|++++|+.+++.+.+.++++.+++.+.+||+|++|+|...++..|..++
T Consensus 129 li~~~~r~~~~~~~~~~~~~~~~~~~~~vvg~~l~~~e~~~~~~~~~~~~ 178 (324)
T TIGR01430 129 LILCGMRHKQPEAAEETLELAKPYKEQTIVGFGLAGDERGGPPPDFVRAF 178 (324)
T ss_pred EEEEEeCCCCHHHHHHHHHHHHhhccCcEEEecCCCCCCCCCHHHHHHHH
Confidence 99999999999999999999998776679999999999766666666554
No 8
>COG1816 Add Adenosine deaminase [Nucleotide transport and metabolism]
Probab=99.97 E-value=2e-30 Score=226.81 Aligned_cols=179 Identities=30% Similarity=0.409 Sum_probs=161.3
Q ss_pred hhhhcCCceeeccccCCCCCHHHHHHHHHHhccCCCCCc------hhhhHHHh--cCCCCHHHHHHhhHHHHHhcCCHHH
Q 028114 2 EWFASMPKVELHAHLNGSIRDSTLLELARVLGEKGVIVF------SDVEHVIM--KSDRSLHEVFKLFDLIHVLTTDHAT 73 (213)
Q Consensus 2 ~~l~~lPK~eLH~HL~Gsi~~~tl~~la~~~~~~g~~~~------~~~~~~~~--~~~~~l~~F~~~f~~~~~ll~~~~~ 73 (213)
+++..+||+|||+||+|+++|+++++++++ +|+..+ ..++++.. ..+.++++|+++|.....+++++++
T Consensus 6 ~~~~~~pkaelH~HL~g~l~p~~v~~la~r---~gi~~~~~~~~~~~~~~~~~~~~~~~~l~~fl~~~y~~~~v~~~~~~ 82 (345)
T COG1816 6 ELIRHLPKAELHRHLEGSLRPELVLELARR---YGIALPPAEFDETILEELRAEYNKFNDLQEFLEKYYRGASVLRTEED 82 (345)
T ss_pred HHHhhchhhHhhhcccCCcCHHHHHHHHHH---hCccCCcccccchhHHHHHHHHhccccHHHHHHHHHHHHHhhccHHH
Confidence 578899999999999999999999999996 687643 12233332 2368999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCeEEEEeeCcCccccCCCCHHHHHHHHHHHHHhhhhhcccccccccccccccccccccccccCC
Q 028114 74 VTRITQEVVEDFASENIVYLELRTTPKRNESIGMSKRSYMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKNMNDACNGT 153 (213)
Q Consensus 74 ~~~~~~~~~~~~a~dnV~Y~Elr~~P~~~~~~~~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (213)
+.++++++++++++||++|+|+|++|..+...|++.+.+++.+.++++.++
T Consensus 83 ~~~la~~~~~~~~~~~~vy~Ei~f~p~~~t~~~l~~~~~~e~~~~~~~~~~----------------------------- 133 (345)
T COG1816 83 FYRLAYEYLEDAAADNVVYAEIRFDPYLHTKRGLSVDTVVEGLIAGFRPAE----------------------------- 133 (345)
T ss_pred HHHHHHHHHHHHHhcCCeEEEEEeCcchhhhccCCHHHHHHHHHHHHHHHh-----------------------------
Confidence 999999999999999999999999998888899999999999999999874
Q ss_pred CCCCcEEEEEEEEeCCCCHHHHHHHHHHHHhhCCCCeEEEecCCCCCCCCccchhhccC
Q 028114 154 RGKKIYVRLLLSIDRRETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWYSFVTDHS 212 (213)
Q Consensus 154 ~~~~i~vrlI~~~~R~~~~~~~~~~~~~a~~~~~~~vvG~dL~G~E~~~~~~~f~~~~~ 212 (213)
+++||..++|+|..|+.+++.+.+.++.+..++...++|+|++|+|..+|+..|+.+|+
T Consensus 134 ~~~gi~s~li~~~~r~~~~e~~~~~~~~a~~~~~~~~~~~~l~~~e~~~p~~~f~~~f~ 192 (345)
T COG1816 134 RDFGIHSKLIVCLLRHLGFESADEELELALRYRDKLVTGVGLAGSESGYPPELFVSLFK 192 (345)
T ss_pred hccCCccceEEEEEeecCHHHHHHHHHHHhhcccccCccCCCCcccccCCHHHHHHHHH
Confidence 47899999999999999999999999999999888888999999999999999998875
No 9
>cd01320 ADA Adenosine deaminase (ADA) is a monomeric zinc dependent enzyme which catalyzes the irreversible hydrolytic deamination of both adenosine, as well as desoxyadenosine, to ammonia and inosine or desoxyinosine, respectively. ADA plays an important role in the purine pathway. Low, as well as high levels of ADA activity have been linked to several diseases.
Probab=99.96 E-value=5.8e-28 Score=211.12 Aligned_cols=174 Identities=34% Similarity=0.504 Sum_probs=148.5
Q ss_pred cCCceeeccccCCCCCHHHHHHHHHHhccCCCCCch-hh--hHHH--hcCCCCHHHHHHhhHHHHHhcCCHHHHHHHHHH
Q 028114 6 SMPKVELHAHLNGSIRDSTLLELARVLGEKGVIVFS-DV--EHVI--MKSDRSLHEVFKLFDLIHVLTTDHATVTRITQE 80 (213)
Q Consensus 6 ~lPK~eLH~HL~Gsi~~~tl~~la~~~~~~g~~~~~-~~--~~~~--~~~~~~l~~F~~~f~~~~~ll~~~~~~~~~~~~ 80 (213)
.|||+|||+||+||++++|+++|+++ +|..++. .. .... .....+|.+|++.|.++..+..+++++++.++.
T Consensus 1 ~lpK~elH~Hl~Gs~~~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ed~~~~~~~ 77 (325)
T cd01320 1 NLPKAELHLHLDGSLRPETILELAKK---NGITLPASDVELLELVVAAYNFSDLQDFLAKYDFGLSVLQTEEDFERLAYE 77 (325)
T ss_pred CCCceEEeecccCCCCHHHHHHHHHH---hCCCCCCCCHHHHHHHhccccCCCHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 48999999999999999999999996 5655432 11 1222 134678999999999999999999999999999
Q ss_pred HHHHHHhCCCeEEEEeeCcCccccCCCCHHHHHHHHHHHHHhhhhhcccccccccccccccccccccccccCCCCCCcEE
Q 028114 81 VVEDFASENIVYLELRTTPKRNESIGMSKRSYMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKNMNDACNGTRGKKIYV 160 (213)
Q Consensus 81 ~~~~~a~dnV~Y~Elr~~P~~~~~~~~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v 160 (213)
.+++++++||.|+|+|++|......|++.++++++++++++++.+ ++||.+
T Consensus 78 ~~~e~~~~Gvt~~E~~~~p~~~~~~~~~~~~~~~~~~~ai~~~~~-----------------------------~~gi~~ 128 (325)
T cd01320 78 YLEDAAADGVVYAEIRFSPQLHTRRGLSFDEVVEAVLRGLDEAEA-----------------------------EFGIKA 128 (325)
T ss_pred HHHHHHHcCCEEEEEEeCchhhccCCCCHHHHHHHHHHHHHHHHH-----------------------------hcCCeE
Confidence 999999999999999999987667789999999999999998753 579999
Q ss_pred EEEEEEeCCCCHHHHHHHHHHHHhhCCCCeEEEecCCCCCCCCccchhhcc
Q 028114 161 RLLLSIDRRETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWYSFVTDH 211 (213)
Q Consensus 161 rlI~~~~R~~~~~~~~~~~~~a~~~~~~~vvG~dL~G~E~~~~~~~f~~~~ 211 (213)
++|+++.|+.+++.+.+.++++.+++.+.++|+|++|+|...+...|.+++
T Consensus 129 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vvg~~l~~~~~~~~~~~~~~~~ 179 (325)
T cd01320 129 RLILCGLRHLSPESAQETLELALKYRDKGVVGFDLAGDEVGFPPEKFVRAF 179 (325)
T ss_pred EEEEEecCCCCHHHHHHHHHHHHhccCCCEEEeecCCCCCCCCHHHHHHHH
Confidence 999999999999999999999988776679999999999776556666554
No 10
>TIGR01431 adm_rel adenosine deaminase-related growth factor. Members of this family have been described as secreted proteins with growth factor activity and regions of adenosine deaminase homology in insects, mollusks, and vertebrates.
Probab=99.95 E-value=5.8e-28 Score=220.78 Aligned_cols=182 Identities=23% Similarity=0.266 Sum_probs=146.8
Q ss_pred hhhhcCCc-eeeccccCCCCCHHHHHHHHHHhccCCCCC-------------ch------------------------hh
Q 028114 2 EWFASMPK-VELHAHLNGSIRDSTLLELARVLGEKGVIV-------------FS------------------------DV 43 (213)
Q Consensus 2 ~~l~~lPK-~eLH~HL~Gsi~~~tl~~la~~~~~~g~~~-------------~~------------------------~~ 43 (213)
.+|++||| +-||+|++|.+++++|++.+.. ..|+.. |+ .+
T Consensus 72 ~i~~~MPKG~~LH~H~~a~~~~d~li~~~~~--~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~w~~~~~~r~~~~~~~f 149 (479)
T TIGR01431 72 KIISSMPKGGALHLHDLAIVSTDWLIKNLTY--RDNLWVCQGKGNKEVLRFRFPKPKPDQCDCKWELLEDVRKSHNAEEF 149 (479)
T ss_pred HHHHhCCCchhhccCccccCCHHHHHHHHhC--CCCeEEEecCCCceeEEEEeccCCCCCCCceeeeHHHHHHhCCHHHH
Confidence 47899999 9999999999999999964443 122211 00 01
Q ss_pred hHHHhc---------------CCCCHHHHHHhhHHHHHhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeeCc-CccccCC-
Q 028114 44 EHVIMK---------------SDRSLHEVFKLFDLIHVLTTDHATVTRITQEVVEDFASENIVYLELRTTP-KRNESIG- 106 (213)
Q Consensus 44 ~~~~~~---------------~~~~l~~F~~~f~~~~~ll~~~~~~~~~~~~~~~~~a~dnV~Y~Elr~~P-~~~~~~~- 106 (213)
+.+..+ ...-|.+|++.|..+.++++|+++++++++++++++++|||+|+|+|++| ..+...|
T Consensus 150 ~~~l~~~~~~~~~~~~~~~~~~~~~W~~F~~~f~~~~~ll~y~p~~~~~~~~~l~d~~~DgV~Y~ElR~~p~~~~~~~G~ 229 (479)
T TIGR01431 150 DDYLRENFTLYTTVPELDYPTINEVWERFGSIFALLDGLLFYAPSWRDYYYRALEEFYADNVQYLELRSTLFILYELEGT 229 (479)
T ss_pred HHHHHHhcccCcCCcccccCCHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHcCCEEEEEEecCchHhhcCCC
Confidence 111110 12468999999999999999999999999999999999999999999998 4454455
Q ss_pred -CCHHHHHHHHHHHHHhhhhhcccccccccccccccccccccccccCCCCCCcEEEEEEEEeCCCCHHHHHHHHHHHHhh
Q 028114 107 -MSKRSYMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKNMNDACNGTRGKKIYVRLLLSIDRRETTEAAMETVKLALEM 185 (213)
Q Consensus 107 -~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vrlI~~~~R~~~~~~~~~~~~~a~~~ 185 (213)
++.+++++++.+++++++++++ + +|++|+|+|++|+.+++.+.+.+++|.++
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~--------------------------~-fi~~rlI~~~~R~~~~~~~~~~~~~a~~~ 282 (479)
T TIGR01431 230 SHDEEDSVRIYKEVTEKFMAEHP--------------------------D-FIGSKLIYSPLRNKDKEELDNYIKVAMEL 282 (479)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCC--------------------------C-CeEEEEEEEccCCCCHHHHHHHHHHHHHH
Confidence 5889999999999999876432 3 79999999999999999999999999886
Q ss_pred C---CCCeEEEecCCCCCCC-CccchhhccC
Q 028114 186 R---DLGVVGIDLSGNPTKG-EWYSFVTDHS 212 (213)
Q Consensus 186 ~---~~~vvG~dL~G~E~~~-~~~~f~~~~~ 212 (213)
+ ++.||||||+|+|+.| |+.+|+++|.
T Consensus 283 k~~~p~~vvGfDL~G~E~~g~pl~~f~~~~~ 313 (479)
T TIGR01431 283 KEKYPDFVAGFDLVGQEDKGRSLLDFIDALL 313 (479)
T ss_pred HhhCCCeEEEEeccCCCCCCCCHHHHHHHHH
Confidence 4 4579999999999755 6699998863
No 11
>TIGR01224 hutI imidazolonepropionase. This enzyme catalyzes the third step in histidine degradation.
Probab=98.07 E-value=0.00018 Score=63.92 Aligned_cols=106 Identities=6% Similarity=-0.034 Sum_probs=67.9
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCeEEEEeeCcCccccCCCCHHHHHHHHHHHHHhhhhhcccccccccccccccccccccc
Q 028114 69 TDHATVTRITQEVVEDFASENIVYLELRTTPKRNESIGMSKRSYMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKNMND 148 (213)
Q Consensus 69 ~~~~~~~~~~~~~~~~~a~dnV~Y~Elr~~P~~~~~~~~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (213)
.++++++..+...+.++.+.||.|+|++.. .|++.++.+. +.++++++.
T Consensus 88 ~~~ed~~~~a~~~~~e~l~~Gvt~ve~~~~------~g~~~~~~~~-~~~a~~~~~------------------------ 136 (377)
T TIGR01224 88 ASEEELLKLALFRLKSMLRSGTTTAEVKSG------YGLDLETELK-MLRAAKALH------------------------ 136 (377)
T ss_pred CCHHHHHHHHHHHHHHHHHCCceEEEeccc------CCCCHHHHHH-HHHHHHHHH------------------------
Confidence 578999999999999999999999998732 2566666554 777777653
Q ss_pred cccCCCCCCcEEEEEEEEeCCCCHH------H-HHHHHHHHHh--hCCCCeEEEecCCCCCCCCccchhhc
Q 028114 149 ACNGTRGKKIYVRLLLSIDRRETTE------A-AMETVKLALE--MRDLGVVGIDLSGNPTKGEWYSFVTD 210 (213)
Q Consensus 149 ~~~~~~~~~i~vrlI~~~~R~~~~~------~-~~~~~~~a~~--~~~~~vvG~dL~G~E~~~~~~~f~~~ 210 (213)
.+.++.+.++.+..+..+.+ . ..+..+.+++ .+...|.|+|+.|++...++..+...
T Consensus 137 -----~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 202 (377)
T TIGR01224 137 -----EEQPVDVVTTFLGAHAVPPEFQGRPDDYVDGICEELIPQVAEEGLASFADVFCEAGVFSVEQSRRI 202 (377)
T ss_pred -----hhCCCceEeeeeecccCCccccCCHHHHHHHHHHHHHHHHHHhCCCCeeEEEecCCCcCHHHHHHH
Confidence 24677787774433333321 1 1112222222 12235889999998876665555443
No 12
>cd01319 AMPD AMP deaminase (AMPD) catalyzes the hydrolytic deamination of adensosine monophosphate (AMP) at position 6 of the adenine nucleotide ring. AMPD is a diverse and highly regulated eukaryotic key enzyme of the adenylate catabolic pathway.
Probab=97.20 E-value=0.004 Score=57.79 Aligned_cols=96 Identities=19% Similarity=0.248 Sum_probs=59.2
Q ss_pred hhcCCceeeccccCCCCCHHHHHHHHHHhc-cC---------CCCC-----ch---------hhhHHH----hcCCCCHH
Q 028114 4 FASMPKVELHAHLNGSIRDSTLLELARVLG-EK---------GVIV-----FS---------DVEHVI----MKSDRSLH 55 (213)
Q Consensus 4 l~~lPK~eLH~HL~Gsi~~~tl~~la~~~~-~~---------g~~~-----~~---------~~~~~~----~~~~~~l~ 55 (213)
+...+|||.|+|+++|++...|++.-++.- +. |-.+ +. +++.+- ......++
T Consensus 55 fyn~~KVD~~vh~s~cm~~k~Ll~FI~~k~~~~pd~vv~~~~g~~~TL~e~f~~l~~~~~~ltvd~L~~~a~~~~~~rfd 134 (496)
T cd01319 55 FYNVRKVDTHVHHSACMNQKHLLRFIKKKLRTEPDEVVIFRDGKKLTLKEVFDSLKLTAYDLSVDTLDVHADRNTFHRFD 134 (496)
T ss_pred ceeCceecccccccccCCHHHHHHHHHHHHHcCCCcEEECCCCccccHHHHHHHcCCChhhCchhhcCcCCCCCcccccc
Confidence 456789999999999999999998655421 11 1111 10 111110 00111222
Q ss_pred HH------------HHhhHHHHHhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeeCcC
Q 028114 56 EV------------FKLFDLIHVLTTDHATVTRITQEVVEDFASENIVYLELRTTPK 100 (213)
Q Consensus 56 ~F------------~~~f~~~~~ll~~~~~~~~~~~~~~~~~a~dnV~Y~Elr~~P~ 100 (213)
.| .+.|-.....+. -+.+.+++++++.++-...-+++|.|++..
T Consensus 135 ~fn~kynp~g~~~Lr~iFLktdn~~~-G~y~Ael~k~v~~~le~~kyq~~E~rlsiy 190 (496)
T cd01319 135 KFNLKYNPIGESRLREIFLKTDNYIN-GRYLAEITKEVFSDLEESKYQHAEYRLSIY 190 (496)
T ss_pred ccccccCccchHHHHHHHhccCCCcc-hHhHHHHHHHHHHHHHhccceeEEEEEEEe
Confidence 22 333433334333 357889999999999999999999999764
No 13
>cd01296 Imidazolone-5PH Imidazolonepropionase/imidazolone-5-propionate hydrolase (Imidazolone-5PH) catalyzes the third step in the histidine degradation pathway, the hydrolysis of (S)-3-(5-oxo-4,5-dihydro-3H-imidazol-4-yl)propanoate to N-formimidoyl-L-glutamate. In bacteria, the enzyme is part of histidine utilization (hut) operon.
Probab=97.11 E-value=0.02 Score=50.72 Aligned_cols=50 Identities=6% Similarity=0.172 Sum_probs=37.6
Q ss_pred cCCHHHHHHHHHHHHHHHHhCCCeEEEEeeCcCccccCCCCHHHHHHHHHHHHHhhh
Q 028114 68 TTDHATVTRITQEVVEDFASENIVYLELRTTPKRNESIGMSKRSYMDAVVEGLRAVS 124 (213)
Q Consensus 68 l~~~~~~~~~~~~~~~~~a~dnV~Y~Elr~~P~~~~~~~~~~~~~l~~v~~~~~~~~ 124 (213)
-.+++++...+++.+.++.+.||.|+|.+.. .+++.+..++ +.++++++.
T Consensus 84 ~~~~~d~~~~a~~~~~~~~~~Gvt~~~~~~~------~~~~~~~~~~-~~~a~~~~~ 133 (371)
T cd01296 84 AASEDELFASALRRLARMLRHGTTTVEVKSG------YGLDLETELK-MLRVIRRLK 133 (371)
T ss_pred hCCHHHHHHHHHHHHHHHHHCCceEEEeccc------CCCCHHHHHH-HHHHHHHHH
Confidence 3467889999999999999999999998722 2456555555 667776654
No 14
>PRK09230 cytosine deaminase; Provisional
Probab=97.01 E-value=0.0029 Score=57.66 Aligned_cols=53 Identities=11% Similarity=0.044 Sum_probs=41.2
Q ss_pred HhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeeCcCccccCCCCHHHHHHHHHHHHHhhh
Q 028114 66 VLTTDHATVTRITQEVVEDFASENIVYLELRTTPKRNESIGMSKRSYMDAVVEGLRAVS 124 (213)
Q Consensus 66 ~ll~~~~~~~~~~~~~~~~~a~dnV~Y~Elr~~P~~~~~~~~~~~~~l~~v~~~~~~~~ 124 (213)
....++++++..+...++++...|+.|+|.++.|... + ...++++.++.++++
T Consensus 92 ~~~~t~ed~~~~a~~~~~e~l~~GvTtvr~~~d~~~~---~---~~~~~a~~~~~~~~~ 144 (426)
T PRK09230 92 KALLTHEDVKQRAWQTLKWQIANGIQHVRTHVDVSDP---T---LTALKAMLEVKEEVA 144 (426)
T ss_pred HhcCCHHHHHHHHHHHHHHHHHcCcccEEeccccCCc---c---hhHHHHHHHHHHHhh
Confidence 3456899999999999999999999999999987422 1 145677777776653
No 15
>KOG1096 consensus Adenosine monophosphate deaminase [Nucleotide transport and metabolism]
Probab=96.80 E-value=0.0041 Score=58.88 Aligned_cols=97 Identities=15% Similarity=0.203 Sum_probs=61.5
Q ss_pred hcCCceeeccccCCCCCHHHHHHHHHHhc----------cCCCCC-------------ch-hhhHHHh----cCCC----
Q 028114 5 ASMPKVELHAHLNGSIRDSTLLELARVLG----------EKGVIV-------------FS-DVEHVIM----KSDR---- 52 (213)
Q Consensus 5 ~~lPK~eLH~HL~Gsi~~~tl~~la~~~~----------~~g~~~-------------~~-~~~~~~~----~~~~---- 52 (213)
...=|||.|+|+.||++---|++.-...- +.|-.+ ++ +++.|.. ..+.
T Consensus 315 YNvRKVDthih~SaCmnQkhLlrFIk~klr~epdrvV~~~~g~~lTLrevF~~l~L~~yDlsvd~ldvha~~~tfHrfdk 394 (768)
T KOG1096|consen 315 YNVRKVDTHIHASACMNQKHLLRFIKKKLRKEPDRVVIQRDGRKLTLREVFKSLGLTAYDLSVDTLDVHADRNTFHRFDK 394 (768)
T ss_pred cccchhcchhhHhhhcCHHHHHHHHHHHhhcCCceEEEecCCceeeHHHHHHHcCCceeccchhHHHhhhchhhhhccch
Confidence 34569999999999999999888655411 111111 11 2222221 1122
Q ss_pred --------CHHHHHHhhHHHHHhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeeCcCcc
Q 028114 53 --------SLHEVFKLFDLIHVLTTDHATVTRITQEVVEDFASENIVYLELRTTPKRN 102 (213)
Q Consensus 53 --------~l~~F~~~f~~~~~ll~~~~~~~~~~~~~~~~~a~dnV~Y~Elr~~P~~~ 102 (213)
+-.+.-+.|-.....+. -+.+.+++.+++-++.+..-+++|.|++...+
T Consensus 395 fn~Kynp~g~s~LR~iFLktDNyI~-GeYlAei~Kev~~dleeSKYQ~ae~rlsiygr 451 (768)
T KOG1096|consen 395 FNAKYNPVGESRLREIFLKTDNYIN-GEYLAEILKEVLSDLEESKYQLAEPRLSIYGR 451 (768)
T ss_pred hhhhcCCccHHHHHHHHHhhccccc-hhhHHHHHHHHHhhHHHhhhhhcceeEEEeee
Confidence 22223344444444444 35889999999999999999999999998754
No 16
>PLN02768 AMP deaminase
Probab=96.70 E-value=0.014 Score=56.68 Aligned_cols=92 Identities=16% Similarity=0.256 Sum_probs=57.2
Q ss_pred cCCceeeccccCCCCCHHHHHHHHHHhc-cC---------CCCCchhhhHHHh--------------------cCCCCHH
Q 028114 6 SMPKVELHAHLNGSIRDSTLLELARVLG-EK---------GVIVFSDVEHVIM--------------------KSDRSLH 55 (213)
Q Consensus 6 ~lPK~eLH~HL~Gsi~~~tl~~la~~~~-~~---------g~~~~~~~~~~~~--------------------~~~~~l~ 55 (213)
..=|||-|+|+.+|++...|++.-++.- +. |..+ ++.+++. ..+..|+
T Consensus 380 nvrKVDthvh~sacMnqk~LLrFIk~kl~~epd~vV~~~dGk~~--TL~evFe~l~lt~ydLsVD~Ldvha~~~tfhRfD 457 (835)
T PLN02768 380 NVRKVDTHVHHSACMNQKHLLRFIKSKLRKEPDEVVIFRDGTYL--TLKEVFESLDLTGYDLNVDLLDVHADKSTFHRFD 457 (835)
T ss_pred eeeEeeccchhhccCCHHHHHHHHHHHHhcCCCceeeccCCccc--cHHHHHHHcCCcccCCcccccccCCCcccccccc
Confidence 3458999999999999999998655421 11 1110 1111110 0111222
Q ss_pred H------------HHHhhHHHHHhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeeCcC
Q 028114 56 E------------VFKLFDLIHVLTTDHATVTRITQEVVEDFASENIVYLELRTTPK 100 (213)
Q Consensus 56 ~------------F~~~f~~~~~ll~~~~~~~~~~~~~~~~~a~dnV~Y~Elr~~P~ 100 (213)
. ..+.|-.....+. -..|.+++.+++.++-..+-+++|+|++..
T Consensus 458 kFn~kynP~G~s~LReiFLktDN~i~-GrYfAELiK~V~~dlE~sKyQ~aE~RlsIY 513 (835)
T PLN02768 458 KFNLKYNPCGQSRLREIFLKQDNLIQ-GRFLAELTKQVFSDLEASKYQMAEYRISIY 513 (835)
T ss_pred ccccccCccchHHHHHHHcCcCCCCC-hhhHHHHHHHHHHHHHhccceeeEEEEEec
Confidence 2 2333333333333 457899999999999999999999999964
No 17
>TIGR01429 AMP_deaminase AMP deaminase. This model describes AMP deaminase, a large, well-conserved eukaryotic protein involved in energy metabolism. Most members of the family have an additional, poorly alignable region of 150 amino acids or more N-terminal to the region included in the model.
Probab=96.44 E-value=0.012 Score=55.82 Aligned_cols=94 Identities=18% Similarity=0.241 Sum_probs=56.8
Q ss_pred cCCceeeccccCCCCCHHHHHHHHHHhc-cC---------CCCC-----ch---------hhhHHH----hcCCCCHHHH
Q 028114 6 SMPKVELHAHLNGSIRDSTLLELARVLG-EK---------GVIV-----FS---------DVEHVI----MKSDRSLHEV 57 (213)
Q Consensus 6 ~lPK~eLH~HL~Gsi~~~tl~~la~~~~-~~---------g~~~-----~~---------~~~~~~----~~~~~~l~~F 57 (213)
..=|||-|+|+.+|++...|++.-++.- +. |-.+ +. +++.+- ......++.|
T Consensus 168 n~rKVDthvh~s~cm~qk~LL~FIk~k~~~~pd~vV~~~~gk~~TL~evf~~l~l~~~dltvd~Ldv~a~~~~fhrfd~f 247 (611)
T TIGR01429 168 NVRKVDTHIHAAASMNQKHLLRFIKHKLKTEPDETVIERDGKKLTLREVFDSLHLDPYDLSVDTLDVHADRNTFHRFDKF 247 (611)
T ss_pred eeEEeeccccccccCCHHHHHHHHHHHHHcCCCcEEecCCCccccHHHHHHHcCCChhhCcHhhhCCcCCCCcccccccc
Confidence 3458999999999999999998655421 11 1110 11 111110 0111222222
Q ss_pred ------------HHhhHHHHHhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeeCcC
Q 028114 58 ------------FKLFDLIHVLTTDHATVTRITQEVVEDFASENIVYLELRTTPK 100 (213)
Q Consensus 58 ------------~~~f~~~~~ll~~~~~~~~~~~~~~~~~a~dnV~Y~Elr~~P~ 100 (213)
.+.|-.+...+. -+.|.+++++++.++-...-+++|.|++..
T Consensus 248 n~kynp~G~s~Lr~iFLktdN~i~-G~YfAelik~v~~~le~skyQ~~E~rlsiy 301 (611)
T TIGR01429 248 NLKYNPVGESRLREIFLKTDNYIG-GKYFAELVKEVFTDLEDSKYQYAEPRLSIY 301 (611)
T ss_pred ccccCccchHHHHHHHhccCCCcc-hhhHHHHHHHHHHHHHhcCceeEEEEEEEe
Confidence 223333333333 357889999999999999999999999754
No 18
>PLN03055 AMP deaminase; Provisional
Probab=96.28 E-value=0.04 Score=52.23 Aligned_cols=94 Identities=18% Similarity=0.265 Sum_probs=57.6
Q ss_pred cCCceeeccccCCCCCHHHHHHHHHHhc-cC---------CCCC-----ch---------hhhHHH-h---cCCCCH---
Q 028114 6 SMPKVELHAHLNGSIRDSTLLELARVLG-EK---------GVIV-----FS---------DVEHVI-M---KSDRSL--- 54 (213)
Q Consensus 6 ~lPK~eLH~HL~Gsi~~~tl~~la~~~~-~~---------g~~~-----~~---------~~~~~~-~---~~~~~l--- 54 (213)
..=|||-|+|+.+|++...|++.-++.- +. |-.+ +. +++.+- . .....+
T Consensus 147 n~rKVDthvh~s~cm~qk~LL~FIk~k~~~~pd~vV~~~~gk~~TL~evfe~l~~~~~dLtVd~Ldvha~~~~fhrfD~f 226 (602)
T PLN03055 147 NVRKVDTHVHHSSCMNQKHLLRFIKSKLRKEPDEVVIFRDGKYLTLREVFESLDLTGYDLNVDLLDVHADKNTFHRFDKF 226 (602)
T ss_pred eeeEeeccccccccCCHHHHHHHHHHHHHcCCCcEeecCCCcchhHHHHHHHcCCCcccCcccccCccCCCCcccccccc
Confidence 3458999999999999999998655421 11 1110 11 011000 0 001112
Q ss_pred ---------HHHHHhhHHHHHhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeeCcC
Q 028114 55 ---------HEVFKLFDLIHVLTTDHATVTRITQEVVEDFASENIVYLELRTTPK 100 (213)
Q Consensus 55 ---------~~F~~~f~~~~~ll~~~~~~~~~~~~~~~~~a~dnV~Y~Elr~~P~ 100 (213)
....+.|-.....+. -..+.+++.+++.++-....+++|.|++..
T Consensus 227 n~kynp~g~s~Lr~iFLktdN~i~-G~YlAel~k~v~~~le~skyQ~~E~rlsiY 280 (602)
T PLN03055 227 NLKYNPCGQSRLREIFLKQDNLIQ-GRFLAELTKEVFSDLEASKYQMAEYRISIY 280 (602)
T ss_pred cccCCccchHHHHHHHcCcCCCcc-hhhHHHHHHHHHHHHHhccceeEEEEEEEe
Confidence 233334444444333 457899999999999999999999999764
No 19
>PTZ00310 AMP deaminase; Provisional
Probab=95.99 E-value=0.018 Score=58.98 Aligned_cols=100 Identities=19% Similarity=0.285 Sum_probs=59.6
Q ss_pred cCCceeeccccCCCCCHHHHHHHHHHhcc----------CCCCC-----ch--------hhhHHHh-cCCC---CHH---
Q 028114 6 SMPKVELHAHLNGSIRDSTLLELARVLGE----------KGVIV-----FS--------DVEHVIM-KSDR---SLH--- 55 (213)
Q Consensus 6 ~lPK~eLH~HL~Gsi~~~tl~~la~~~~~----------~g~~~-----~~--------~~~~~~~-~~~~---~l~--- 55 (213)
..=|||-|+|+.+|+....|++.-++.-+ +|..+ |. +++.+-. .... .++
T Consensus 843 n~rKVDthih~sacm~qk~LL~FIk~kl~~~~d~vV~~~~g~~~TL~evF~~l~~t~~lsvd~L~v~ad~~~f~rfD~fn 922 (1453)
T PTZ00310 843 QAYKVDTHIHMAAGMTARQLLEFVVDKLLESGDDIAFKRGDHIVTLGQLFSKYGITPNLTVDQLNVQADHTLFERFDNFN 922 (1453)
T ss_pred eeeeeccccchhccCCHHHHHHHHHHHHhcCCCcEEEcCCCccccHHHHHHHcCCCcccchhhhccccCcchhhhhhccc
Confidence 45699999999999999999997665211 11110 11 1111100 0001 111
Q ss_pred ---------HHHHhhHHHHHhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeeCcCccccCCCCHHH
Q 028114 56 ---------EVFKLFDLIHVLTTDHATVTRITQEVVEDFASENIVYLELRTTPKRNESIGMSKRS 111 (213)
Q Consensus 56 ---------~F~~~f~~~~~ll~~~~~~~~~~~~~~~~~a~dnV~Y~Elr~~P~~~~~~~~~~~~ 111 (213)
+.-+.|-.....+. -..|.+++.+++.++-++.-+++|.|+|.. |.+.++
T Consensus 923 ~kynP~g~s~LreiFLktDN~i~-G~YfAel~K~v~~~le~skyq~aE~RlSIY-----G~~~~E 981 (1453)
T PTZ00310 923 SKYNPMENPDLRSLLLKTDNFMK-GRYFAELIKDVFEQYSRDRFTYAENRLSIY-----GINVKE 981 (1453)
T ss_pred ccCCCcccHHHHHHHccCCCCcc-cHhHHHHHHHHHHHHHhccceeeeeeEeee-----CCCHHH
Confidence 11222333333333 247889999999999999999999999984 445555
No 20
>PRK08393 N-ethylammeline chlorohydrolase; Provisional
Probab=86.33 E-value=5.2 Score=36.26 Aligned_cols=44 Identities=5% Similarity=0.000 Sum_probs=23.1
Q ss_pred CHHHHHHhhHHHHHhcCCHHHHHHHHHHHHHHHHhCCC-eEEEEe
Q 028114 53 SLHEVFKLFDLIHVLTTDHATVTRITQEVVEDFASENI-VYLELR 96 (213)
Q Consensus 53 ~l~~F~~~f~~~~~ll~~~~~~~~~~~~~~~~~a~dnV-~Y~Elr 96 (213)
++.+|++.+.+......++++++......+.++.+.|+ .++|..
T Consensus 76 ~l~~~l~~~~~~~~~~~~~~~~~~~a~~~~~e~l~~GvTtv~d~~ 120 (424)
T PRK08393 76 PLMEWLQNYIWPRERKLKRKDIYWGAYLGLLEMIKSGTTTFVDMY 120 (424)
T ss_pred CHHHHHHhhhccccccCCHHHHHHHHHHHHHHHHhcCceEEeccc
Confidence 34455544332222233455666666666666666666 555554
No 21
>cd01292 metallo-dependent_hydrolases Superfamily of metallo-dependent hydrolases (also called amidohydrolase superfamily) is a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The family includes urease alpha, adenosine deaminase, phosphotriesterase dihydroorotases, allantoinases, hydantoinases, AMP-, adenine and cytosine deaminases, imidazolonepropionase, aryldialkylphosphatase, chlorohydrolases, formylmethanofuran dehydrogenases and others.
Probab=84.85 E-value=17 Score=29.36 Aligned_cols=36 Identities=6% Similarity=-0.051 Sum_probs=30.7
Q ss_pred HhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeeCcCc
Q 028114 66 VLTTDHATVTRITQEVVEDFASENIVYLELRTTPKR 101 (213)
Q Consensus 66 ~ll~~~~~~~~~~~~~~~~~a~dnV~Y~Elr~~P~~ 101 (213)
.-..++++++......+.++.+.||.++..+.++..
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~Gvttv~~~~~~~~ 60 (275)
T cd01292 25 AEELSPEDLYEDTLRALEALLAGGVTTVVDMGSTPP 60 (275)
T ss_pred ccccCHHHHHHHHHHHHHHHHhcCceEEEeeEeecC
Confidence 456778889999999999999999999998876543
No 22
>smart00148 PLCXc Phospholipase C, catalytic domain (part); domain X. Phosphoinositide-specific phospholipases C. These enzymes contain 2 regions (X and Y) which together form a TIM barrel-like structure containing the active site residues. Phospholipase C enzymes (PI-PLC) act as signal transducers that generate two second messengers, inositol-1,4,5-trisphosphate and diacylglycerol. The bacterial enzyme [6] appears to be a homologue of the mammalian PLCs.
Probab=78.33 E-value=26 Score=26.69 Aligned_cols=22 Identities=14% Similarity=-0.097 Sum_probs=17.4
Q ss_pred HHHHHHHHhCCCeEEEEeeCcC
Q 028114 79 QEVVEDFASENIVYLELRTTPK 100 (213)
Q Consensus 79 ~~~~~~~a~dnV~Y~Elr~~P~ 100 (213)
...+.++...||+|+|+|+...
T Consensus 31 ~~~i~~qL~~GvR~~dirv~~~ 52 (135)
T smart00148 31 VEGYIQALDHGCRCVELDCWDG 52 (135)
T ss_pred HHHHHHHHHhCCCEEEEEcccC
Confidence 3466677789999999998754
No 23
>PRK09356 imidazolonepropionase; Validated
Probab=76.21 E-value=57 Score=29.06 Aligned_cols=29 Identities=7% Similarity=0.217 Sum_probs=24.8
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCeEEEEee
Q 028114 69 TDHATVTRITQEVVEDFASENIVYLELRT 97 (213)
Q Consensus 69 ~~~~~~~~~~~~~~~~~a~dnV~Y~Elr~ 97 (213)
.+++++...+...+.++.+.||.+++.+.
T Consensus 113 ~~~e~~~~~a~~~~~~~l~~GvTtv~~~~ 141 (406)
T PRK09356 113 ASEEELFAQALPRLDALLAEGVTTVEIKS 141 (406)
T ss_pred CCHHHHHHHHHHHHHHHHhcCceEEEeec
Confidence 46778888889999999999999998664
No 24
>PF02811 PHP: PHP domain; InterPro: IPR004013 The PHP (Polymerase and Histidinol Phosphatase) domain is a putative phosphoesterase domain. This family is often associated with an N-terminal region IPR003141 from INTERPRO.; GO: 0003824 catalytic activity; PDB: 2WJE_A 3QY8_A 2WJD_A 2WJF_A 1PB0_B 1M68_A 1M65_A 3E38_B 2W9M_A 3E0F_A ....
Probab=67.41 E-value=6.2 Score=30.33 Aligned_cols=26 Identities=35% Similarity=0.578 Sum_probs=20.6
Q ss_pred eeeccc-----cCCCCCHHHHHHHHHHhccCCCC
Q 028114 10 VELHAH-----LNGSIRDSTLLELARVLGEKGVI 38 (213)
Q Consensus 10 ~eLH~H-----L~Gsi~~~tl~~la~~~~~~g~~ 38 (213)
+|||+| ++|..+++.+++.|.+ .|+.
T Consensus 1 iDlH~HT~~s~~dg~~~~~e~v~~A~~---~Gl~ 31 (175)
T PF02811_consen 1 IDLHVHTKYSILDGKDSPEEYVEQAKE---KGLD 31 (175)
T ss_dssp EEEEB--TTTSSTSSSSHHHHHHHHHH---TTES
T ss_pred CCccccccCcchhhcCCHHHHHHHHHH---cCCC
Confidence 689999 5788999999999996 5654
No 25
>TIGR01434 glu_cys_ligase glutamate--cysteine ligase. serve to protect against oxidative damage and participate in a biosynthetic or detoxification reactions.
Probab=66.28 E-value=10 Score=35.64 Aligned_cols=37 Identities=19% Similarity=0.430 Sum_probs=25.0
Q ss_pred HHHHHHhCCCeEEEEeeC-cCccccCCCCHHH--HHHHHH
Q 028114 81 VVEDFASENIVYLELRTT-PKRNESIGMSKRS--YMDAVV 117 (213)
Q Consensus 81 ~~~~~a~dnV~Y~Elr~~-P~~~~~~~~~~~~--~l~~v~ 117 (213)
-++.+.+.||.|+|+|.- .......|++.++ .++.+.
T Consensus 310 ~l~aL~~~GVeYIEvR~lDlnPf~~~GI~~~ql~FL~lfL 349 (512)
T TIGR01434 310 PSDALLRRGIEYVEVRSLDINPFSPIGIDEQQVRFLDLFL 349 (512)
T ss_pred hHHHHHhcCCcEEEEeeccCCCCCcCCCCHHHHHHHHHHH
Confidence 678889999999999943 2223445777654 444443
No 26
>PRK02107 glutamate--cysteine ligase; Provisional
Probab=65.53 E-value=11 Score=35.58 Aligned_cols=36 Identities=19% Similarity=0.449 Sum_probs=24.3
Q ss_pred HHHHHHhCCCeEEEEeeC-cCccccCCCCHHH--HHHHH
Q 028114 81 VVEDFASENIVYLELRTT-PKRNESIGMSKRS--YMDAV 116 (213)
Q Consensus 81 ~~~~~a~dnV~Y~Elr~~-P~~~~~~~~~~~~--~l~~v 116 (213)
-++.+.+.||.|+|+|.- .......|++.++ .++.+
T Consensus 314 ~l~aL~~~GIeYIEvR~lDlNPf~~~GI~~~ql~FL~lf 352 (523)
T PRK02107 314 PSDALARRGVEYIEVRSLDINPFSPIGIDEEQVRFLDLF 352 (523)
T ss_pred HHHHHHhcCCcEEEEeeccCCCCCcCCCCHHHHHHHHHH
Confidence 678889999999999943 2223445777654 44443
No 27
>PF04262 Glu_cys_ligase: Glutamate-cysteine ligase ; InterPro: IPR007370 This is a group of bacterial glutamate-cysteine ligases that carry out the first step of the glutathione biosynthesis pathway according to the following equation: ATP + L-glutamate + L-cysteine = ADP + phosphate + L-glutamyl-L-cysteine (L-aminohexanoate can replace glutamate). ; GO: 0004357 glutamate-cysteine ligase activity, 0006750 glutathione biosynthetic process; PDB: 3LN6_A 3LN7_B 1VA6_B 2D33_B 1V4G_B 2D32_A 3NZT_A.
Probab=62.32 E-value=7.3 Score=35.18 Aligned_cols=31 Identities=26% Similarity=0.439 Sum_probs=17.8
Q ss_pred HHHHHHHhCCCeEEEEeeC-cCccccCCCCHH
Q 028114 80 EVVEDFASENIVYLELRTT-PKRNESIGMSKR 110 (213)
Q Consensus 80 ~~~~~~a~dnV~Y~Elr~~-P~~~~~~~~~~~ 110 (213)
.-++++.++||.|+|+|.- .......|++.+
T Consensus 310 ~~l~~L~~~Gi~YiE~R~lDlnPf~~~GI~~~ 341 (377)
T PF04262_consen 310 RPLDALLRRGIEYIELRSLDLNPFSPIGISED 341 (377)
T ss_dssp SCHHHHHHH---EEEEEEEE--TTSTTSS-HH
T ss_pred chHHHHHhcCCeEEEEeeccCCCCCcCCCCHH
Confidence 3578889999999999943 222345677764
No 28
>cd01298 ATZ_TRZ_like TRZ/ATZ family contains enzymes from the atrazine degradation pathway and related hydrolases. Atrazine, a chlorinated herbizide, can be catabolized by a variety of different bacteria. The first three steps of the atrazine dehalogenation pathway are catalyzed by atrazine chlorohydrolase (AtzA), hydroxyatrazine ethylaminohydrolase (AtzB), and N-isopropylammelide N-isopropylaminohydrolase (AtzC). All three enzymes belong to the superfamily of metal dependent hydrolases. AtzA and AtzB, beside other related enzymes are represented in this CD.
Probab=59.94 E-value=15 Score=32.51 Aligned_cols=38 Identities=11% Similarity=-0.104 Sum_probs=21.7
Q ss_pred HHHHHHhhHHHHHhcCCHHHHHHHHHHHHHHHHhCCCe
Q 028114 54 LHEVFKLFDLIHVLTTDHATVTRITQEVVEDFASENIV 91 (213)
Q Consensus 54 l~~F~~~f~~~~~ll~~~~~~~~~~~~~~~~~a~dnV~ 91 (213)
+.+|++.+........+++++...+...+.++.+.||.
T Consensus 79 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvT 116 (411)
T cd01298 79 LMEWLKDLIWPLERLLTEEDVYLGALLALAEMIRSGTT 116 (411)
T ss_pred HHHHHHhhhhhhhhcCCHHHHHHHHHHHHHHHHhcCcc
Confidence 44455444333334455666666666666666666764
No 29
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=56.65 E-value=13 Score=24.33 Aligned_cols=26 Identities=27% Similarity=0.525 Sum_probs=19.8
Q ss_pred eecccc-----CCCCCHHHHHHHHHHhccCCCCC
Q 028114 11 ELHAHL-----NGSIRDSTLLELARVLGEKGVIV 39 (213)
Q Consensus 11 eLH~HL-----~Gsi~~~tl~~la~~~~~~g~~~ 39 (213)
|||+|- +|.++++.+++.|++ +|+..
T Consensus 1 dlH~Ht~~S~~~~~~~~~~~~~~a~~---~g~~~ 31 (67)
T smart00481 1 DLHVHSDYSLLDGALSPEELVKRAKE---LGLKA 31 (67)
T ss_pred CCccccCCccccccCCHHHHHHHHHH---cCCCE
Confidence 577774 577899999999996 66643
No 30
>COG0613 Predicted metal-dependent phosphoesterases (PHP family) [General function prediction only]
Probab=56.00 E-value=12 Score=31.96 Aligned_cols=27 Identities=37% Similarity=0.633 Sum_probs=23.1
Q ss_pred ceeecccc---CCCCCHHHHHHHHHHhccCCCC
Q 028114 9 KVELHAHL---NGSIRDSTLLELARVLGEKGVI 38 (213)
Q Consensus 9 K~eLH~HL---~Gsi~~~tl~~la~~~~~~g~~ 38 (213)
|+|||||= +|+.+|.-++++|.. .|+.
T Consensus 3 ~~DLHvHSt~Sdg~~~p~~vv~~A~~---~g~~ 32 (258)
T COG0613 3 KADLHVHTTASDGGLTPREVVERAKA---KGVD 32 (258)
T ss_pred ceeeeEecccCCCCCCHHHHHHHHHH---cCCC
Confidence 69999997 588999999999996 5664
No 31
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=54.26 E-value=1.4e+02 Score=25.45 Aligned_cols=88 Identities=17% Similarity=0.044 Sum_probs=58.9
Q ss_pred HHHHHHHhCCCeEEEEeeCcCcc---ccCCCCHHHHHHHHHHHHHhhhhhcccccccccccccccccccccccccCCCCC
Q 028114 80 EVVEDFASENIVYLELRTTPKRN---ESIGMSKRSYMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKNMNDACNGTRGK 156 (213)
Q Consensus 80 ~~~~~~a~dnV~Y~Elr~~P~~~---~~~~~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (213)
+-++.+.+-|+..+-+.++.+.. ...+.+.++.++.+.+.++.+++ .
T Consensus 75 ~di~~a~~~g~~~i~i~~~~S~~~~~~~~~~~~~e~~~~~~~~i~~a~~------------------------------~ 124 (262)
T cd07948 75 DDARIAVETGVDGVDLVFGTSPFLREASHGKSITEIIESAVEVIEFVKS------------------------------K 124 (262)
T ss_pred HHHHHHHHcCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHH------------------------------C
Confidence 34556667788877766543221 23477889999999999988753 3
Q ss_pred CcEEEEEE-EEeCCCCHHHHHHHHHHHHhhCCCCeEEEecCCC
Q 028114 157 KIYVRLLL-SIDRRETTEAAMETVKLALEMRDLGVVGIDLSGN 198 (213)
Q Consensus 157 ~i~vrlI~-~~~R~~~~~~~~~~~~~a~~~~~~~vvG~dL~G~ 198 (213)
|+.+.+-+ ++.| .+++...+.++.+.+.....++=-|.+|-
T Consensus 125 G~~v~~~~eda~r-~~~~~l~~~~~~~~~~g~~~i~l~Dt~G~ 166 (262)
T cd07948 125 GIEVRFSSEDSFR-SDLVDLLRVYRAVDKLGVNRVGIADTVGI 166 (262)
T ss_pred CCeEEEEEEeeCC-CCHHHHHHHHHHHHHcCCCEEEECCcCCC
Confidence 66677755 4445 67888888877777665455555577664
No 32
>PRK06740 histidinol-phosphatase; Validated
Probab=51.95 E-value=25 Score=31.05 Aligned_cols=76 Identities=16% Similarity=0.220 Sum_probs=42.7
Q ss_pred ceeeccccC-CCCCHHHHHHHHHHhccCCCCCchhhhHHHhcCCCCHHHHHHhhHHHHHhcCCHHHHHHHHHHHHHHHHh
Q 028114 9 KVELHAHLN-GSIRDSTLLELARVLGEKGVIVFSDVEHVIMKSDRSLHEVFKLFDLIHVLTTDHATVTRITQEVVEDFAS 87 (213)
Q Consensus 9 K~eLH~HL~-Gsi~~~tl~~la~~~~~~g~~~~~~~~~~~~~~~~~l~~F~~~f~~~~~ll~~~~~~~~~~~~~~~~~a~ 87 (213)
|+|-|.||+ |-.|..+|.+.+. ++..+....+ ...+...-...-.....-++.-++-+.-+.++++.+.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yv~~Ai~ 72 (331)
T PRK06740 2 KVDYHIHLEEGPYSIGWLAKINE-----ALQHYEPLKE----AKHSMEWLVKTQERLQRRVKEGPYTTKWIDLYLEEALR 72 (331)
T ss_pred cceeEEeeccCccchhHHHHhhh-----hhhccCcccc----ccchHHHHHHHHHHHHHHHhcCCCccchHHHHHHHHHH
Confidence 799999996 6778888876554 2221111111 11233323333334444444444445557888888999
Q ss_pred CCCeEE
Q 028114 88 ENIVYL 93 (213)
Q Consensus 88 dnV~Y~ 93 (213)
.|+.-+
T Consensus 73 ~G~~~i 78 (331)
T PRK06740 73 KGIKEV 78 (331)
T ss_pred CCCcEE
Confidence 887644
No 33
>cd01293 Bact_CD Bacterial cytosine deaminase and related metal-dependent hydrolases. Cytosine deaminases (CDs) catalyze the deamination of cytosine, producing uracil and ammonia. They play an important role in pyrimidine salvage. CDs are present in prokaryotes and fungi, but not mammalian cells. The bacterial enzymes, but not the fungal enzymes, are related to the adenosine deaminases (ADA). The bacterial enzymes are iron dependent and hexameric.
Probab=50.97 E-value=18 Score=31.75 Aligned_cols=32 Identities=6% Similarity=-0.008 Sum_probs=25.9
Q ss_pred cCCHHHHHHHHHHHHHHHHhCCCeEEEEeeCc
Q 028114 68 TTDHATVTRITQEVVEDFASENIVYLELRTTP 99 (213)
Q Consensus 68 l~~~~~~~~~~~~~~~~~a~dnV~Y~Elr~~P 99 (213)
..+++++.......+.++.+.||.+++.+..+
T Consensus 88 ~~t~~~~~~~~~~~~~~~l~~GvTtv~~~~~~ 119 (398)
T cd01293 88 LLTAEDVKERAERALELAIAHGTTAIRTHVDV 119 (398)
T ss_pred ccChHHHHHHHHHHHHHHHHcChhheeeeecc
Confidence 46788888888888899999999988776654
No 34
>PRK07135 dnaE DNA polymerase III DnaE; Validated
Probab=50.42 E-value=14 Score=37.47 Aligned_cols=25 Identities=28% Similarity=0.535 Sum_probs=21.7
Q ss_pred CCceeeccc-----cCCCCCHHHHHHHHHH
Q 028114 7 MPKVELHAH-----LNGSIRDSTLLELARV 31 (213)
Q Consensus 7 lPK~eLH~H-----L~Gsi~~~tl~~la~~ 31 (213)
|+.++||+| |+|+++++.+++.|++
T Consensus 1 m~fv~LHvHS~ySlLDg~~~~~elv~~Ak~ 30 (973)
T PRK07135 1 MKLINLHTNTEYSFLSSTIKLDSLIKYAKE 30 (973)
T ss_pred CCccccccCccCcccccCCCHHHHHHHHHH
Confidence 457899999 4777999999999996
No 35
>TIGR01435 glu_cys_lig_rel glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type. gamma-glutamyltripeptides of the form gamma-Glu-Cys-X(aa). The N-terminal region is similar to proteobacterial glutamate-cysteine ligase. The C-terminal region is homologous to cyanophycin synthetase of cyanobacteria and, more distantly, to D-alanine-D-alanine ligases. Members of this family are found in Listeria and Enterococcus, Gram-positive lineages in which glutathione is produced (see PUBMED:8606174), and in Pasteurella multocida, a Proteobacterium. In Clostridium acetobutylicum, adjacent genes include separate proteins rather than a fusion protein.
Probab=48.75 E-value=22 Score=35.04 Aligned_cols=37 Identities=32% Similarity=0.513 Sum_probs=23.8
Q ss_pred HHHHHHhCCCeEEEEeeC-cCccccCCCCHHH--HHHHHH
Q 028114 81 VVEDFASENIVYLELRTT-PKRNESIGMSKRS--YMDAVV 117 (213)
Q Consensus 81 ~~~~~a~dnV~Y~Elr~~-P~~~~~~~~~~~~--~l~~v~ 117 (213)
-++++.+.||.|+|+|.- -......|++.++ .++.+.
T Consensus 259 ~~~~l~~~Gi~YiE~R~lDlnPf~~~GI~~~~~~Fl~lfl 298 (737)
T TIGR01435 259 TVESLAKTGIEYLEIRSIDLNPFEPNGISKDELIFIHLFM 298 (737)
T ss_pred cHHHHHhcCCcEEEEeeccCCCCCcCCCCHHHHHHHHHHH
Confidence 457888999999999943 2223445777654 444443
No 36
>PRK06886 hypothetical protein; Validated
Probab=48.72 E-value=1.9e+02 Score=25.51 Aligned_cols=70 Identities=14% Similarity=0.126 Sum_probs=43.4
Q ss_pred eeeccccCCCCCHHHHHHHHHHhccCCCCCchhhhHHHhcCCCCHHHHHHhhHHHHHhcCCHHHHHHHHHHHHHHHHhCC
Q 028114 10 VELHAHLNGSIRDSTLLELARVLGEKGVIVFSDVEHVIMKSDRSLHEVFKLFDLIHVLTTDHATVTRITQEVVEDFASEN 89 (213)
Q Consensus 10 ~eLH~HL~Gsi~~~tl~~la~~~~~~g~~~~~~~~~~~~~~~~~l~~F~~~f~~~~~ll~~~~~~~~~~~~~~~~~a~dn 89 (213)
+|-|.||+=+..... .+++. + ...++.+=++.+..... ..+.+++.+=+...++.+.+.|
T Consensus 23 v~~H~HlDk~~~~~~-~~~~~-----~-------------~~g~l~e~i~~~~~~k~-~~t~~dv~~Ra~~~l~~~~~~G 82 (329)
T PRK06886 23 VNAHAHADRAFTMTP-EKIAI-----Y-------------HYANLQQKWDLVDEVKR-NSTVEDYYARFSQAIELMISQG 82 (329)
T ss_pred ccccccccccccCCC-ccccc-----c-------------CCCCHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHHHHHcC
Confidence 899999997764322 00110 0 11234333444443333 4567788888899999999999
Q ss_pred CeEEEEeeCc
Q 028114 90 IVYLELRTTP 99 (213)
Q Consensus 90 V~Y~Elr~~P 99 (213)
+.|+=..+..
T Consensus 83 tt~iRtHvdv 92 (329)
T PRK06886 83 VTAFGTFVDI 92 (329)
T ss_pred cccEeeeecc
Confidence 9999776643
No 37
>cd00137 PI-PLCc Catalytic domain of prokaryotic and eukaryotic phosphoinositide-specific phospholipase C. This subfamily corresponds to the catalytic domain present in prokaryotic and eukaryotic phosphoinositide-specific phospholipase C (PI-PLC), which is a ubiquitous enzyme catalyzing the cleavage of the sn3-phosphodiester bond in the membrane phosphoinositides (phosphatidylinositol, PI; Phosphatidylinositol-4-phosphate, PIP; phosphatidylinositol 4,5-bisphosphate, PIP2) to yield inositol phosphates (inositol monosphosphate, InsP; inositol diphosphate, InsP2; inositol trisphosphate, InsP3) and diacylglycerol (DAG). The higher eukaryotic PI-PLCs (EC 3.1.4.11) have a multidomain organization that consists of a PLC catalytic core domain, and various regulatory domains. They play a critical role in most signal transduction pathways, controlling numerous cellular events, such as cell growth, proliferation, excitation and secretion. These PI-PLCs strictly require Ca2+ for their catalytic a
Probab=47.57 E-value=76 Score=27.18 Aligned_cols=21 Identities=10% Similarity=0.063 Sum_probs=16.4
Q ss_pred HHHHHHHHhCCCeEEEEeeCc
Q 028114 79 QEVVEDFASENIVYLELRTTP 99 (213)
Q Consensus 79 ~~~~~~~a~dnV~Y~Elr~~P 99 (213)
...+.++...||+|+|||...
T Consensus 37 ~~~~~~qL~~G~R~lDir~~~ 57 (274)
T cd00137 37 TEMYRQQLLSGCRCVDIRCWD 57 (274)
T ss_pred HHHHHHHHHcCCcEEEEEeec
Confidence 355666777999999999864
No 38
>PF00388 PI-PLC-X: Phosphatidylinositol-specific phospholipase C, X domain This entry is for the whole phospholipase C protein; InterPro: IPR000909 Phosphatidylinositol-specific phospholipase C (3.1.4.11 from EC), a eukaryotic intracellular enzyme, plays an important role in signal transduction processes []. It catalyzes the hydrolysis of 1-phosphatidyl-D-myo-inositol-3,4,5-triphosphate into the second messenger molecules diacylglycerol and inositol-1,4,5-triphosphate. This catalytic process is tightly regulated by reversible phosphorylation and binding of regulatory proteins [, , ]. In mammals, there are at least 6 different isoforms of PI-PLC, they differ in their domain structure, their regulation, and their tissue distribution. Lower eukaryotes also possess multiple isoforms of PI-PLC. All eukaryotic PI-PLCs contain two regions of homology, sometimes referred to as the 'X-box' and 'Y-box'. The order of these two regions is always the same (NH2-X-Y-COOH), but the spacing is variable. In most isoforms, the distance between these two regions is only 50-100 residues but in the gamma isoforms one PH domain, two SH2 domains, and one SH3 domain are inserted between the two PLC-specific domains. The two conserved regions have been shown to be important for the catalytic activity. By profile analysis, we could show that sequences with significant similarity to the X-box domain occur also in prokaryotic and trypanosome PI-specific phospholipases C. Apart from this region, the prokaryotic enzymes show no similarity to their eukaryotic counterparts.; GO: 0004629 phospholipase C activity, 0006629 lipid metabolic process, 0035556 intracellular signal transduction; PDB: 2FJU_B 2ZKM_X 3V18_A 3V1H_A 3V16_A 3QR1_D 3EA3_A 3EA1_A 2OR2_A 1T6M_B ....
Probab=45.18 E-value=53 Score=24.97 Aligned_cols=19 Identities=26% Similarity=0.346 Sum_probs=13.9
Q ss_pred HHHHHHHhCCCeEEEEeeC
Q 028114 80 EVVEDFASENIVYLELRTT 98 (213)
Q Consensus 80 ~~~~~~a~dnV~Y~Elr~~ 98 (213)
..+.++...||+|+|+|+.
T Consensus 30 ~~i~~QL~~GiR~lDlrv~ 48 (146)
T PF00388_consen 30 WSIREQLESGIRYLDLRVW 48 (146)
T ss_dssp HHHHHHHHTT--EEEEEEE
T ss_pred HhHHHHHhccCceEEEEEE
Confidence 4566777889999999988
No 39
>COG2918 GshA Gamma-glutamylcysteine synthetase [Coenzyme metabolism]
Probab=44.98 E-value=32 Score=31.94 Aligned_cols=33 Identities=21% Similarity=0.337 Sum_probs=22.3
Q ss_pred HHHHHHHhCCCeEEEEeeC-cCccccCCCCHHHH
Q 028114 80 EVVEDFASENIVYLELRTT-PKRNESIGMSKRSY 112 (213)
Q Consensus 80 ~~~~~~a~dnV~Y~Elr~~-P~~~~~~~~~~~~~ 112 (213)
.-++.++.-||.|+|+|.- ......-|++.+++
T Consensus 314 ~~~~aL~~~GiEYiEvRslDiNPF~piGIs~~q~ 347 (518)
T COG2918 314 SPSDALLRRGIEYIEVRSLDINPFSPIGISEDQA 347 (518)
T ss_pred ChHHHHHhcCceEEEEEeeccCCCCcCCCCHHHH
Confidence 3466788999999999943 22234457776654
No 40
>cd08619 PI-PLCXDc_plant Catalytic domain of phosphatidylinositol-specific phospholipase C, X domain containing proteins found in plants. The CD corresponds to the catalytic domain present in uncharacterized plant phosphatidylinositol-specific phospholipase C, X domain containing proteins (PI-PLCXD). The typical eukaryotic phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11) has a multidomain organization that consists of a PLC catalytic core domain, and various regulatory domains. The catalytic core domain is assembled from two highly conserved X- and Y-regions split by a divergent linker sequence. In contrast, plant PI-PLCXDs contain a single TIM-barrel type catalytic domain, X domain, and are more closely related to bacterial PI-PLCs, which participate in Ca2+-independent PI metabolism, hydrolyzing the membrane lipid phosphatidylinositol (PI) to produce phosphorylated myo-inositol and diacylglycerol (DAG). Although the biological function of plant PI-PLCXDs still remains u
Probab=42.16 E-value=36 Score=29.61 Aligned_cols=49 Identities=14% Similarity=0.149 Sum_probs=28.5
Q ss_pred HHHHHHHhCCCeEEEEeeCcCccccCCCCHHHHHHHHHHHHHhhhhhcc
Q 028114 80 EVVEDFASENIVYLELRTTPKRNESIGMSKRSYMDAVVEGLRAVSAVDV 128 (213)
Q Consensus 80 ~~~~~~a~dnV~Y~Elr~~P~~~~~~~~~~~~~l~~v~~~~~~~~~~~~ 128 (213)
.-+.+....||+|+++|+.-..+...|.-....++.+++.+.+|-+++|
T Consensus 60 ~sI~~QL~~GiRyfDiRv~~~~~~~HG~~~~~~~~dvL~~i~~FL~~hp 108 (285)
T cd08619 60 LSIYNQLCSGARVLDIRVQEDRRVCHGCLKTYPVDVVLNDIKRFLSETK 108 (285)
T ss_pred CcHHHHHhCCceEEEEEecCCeEEECCCcCCCcHHHHHHHHHHHHHHCC
Confidence 3466777899999999988544322332111224445555556655444
No 41
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=41.78 E-value=2.6e+02 Score=24.97 Aligned_cols=90 Identities=11% Similarity=0.065 Sum_probs=60.1
Q ss_pred HHHHHHHHhCCCeEEEEeeCcCcc---ccCCCCHHHHHHHHHHHHHhhhhhcccccccccccccccccccccccccCCCC
Q 028114 79 QEVVEDFASENIVYLELRTTPKRN---ESIGMSKRSYMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKNMNDACNGTRG 155 (213)
Q Consensus 79 ~~~~~~~a~dnV~Y~Elr~~P~~~---~~~~~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (213)
.+-++.+.+-|+..+-+.++-+.. ..-+.+.++.++.+.+.++.+++
T Consensus 74 ~~di~~a~~~g~~~i~i~~~~Sd~~~~~~~~~~~~~~~~~~~~~i~~ak~------------------------------ 123 (363)
T TIGR02090 74 KKDIDKAIDCGVDSIHTFIATSPIHLKYKLKKSRDEVLEKAVEAVEYAKE------------------------------ 123 (363)
T ss_pred HHHHHHHHHcCcCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH------------------------------
Confidence 444666777788887665543221 12467899999999999988763
Q ss_pred CCcEEEEEE-EEeCCCCHHHHHHHHHHHHhhCCCCeEEEecCCCC
Q 028114 156 KKIYVRLLL-SIDRRETTEAAMETVKLALEMRDLGVVGIDLSGNP 199 (213)
Q Consensus 156 ~~i~vrlI~-~~~R~~~~~~~~~~~~~a~~~~~~~vvG~dL~G~E 199 (213)
.|..+.+-+ +..| .+++...+.++.+.+...+.|.=-|-+|.-
T Consensus 124 ~G~~v~~~~eda~r-~~~~~l~~~~~~~~~~g~~~i~l~DT~G~~ 167 (363)
T TIGR02090 124 HGLIVEFSAEDATR-TDIDFLIKVFKRAEEAGADRINIADTVGVL 167 (363)
T ss_pred cCCEEEEEEeecCC-CCHHHHHHHHHHHHhCCCCEEEEeCCCCcc
Confidence 355566554 3444 578888888887776655556666777754
No 42
>PTZ00310 AMP deaminase; Provisional
Probab=41.67 E-value=18 Score=38.12 Aligned_cols=28 Identities=29% Similarity=0.379 Sum_probs=24.4
Q ss_pred hhcCCceeeccccCCCCCHHHHHHHHHH
Q 028114 4 FASMPKVELHAHLNGSIRDSTLLELARV 31 (213)
Q Consensus 4 l~~lPK~eLH~HL~Gsi~~~tl~~la~~ 31 (213)
+...+|||.|+|+++|++...|++.-++
T Consensus 202 Fyn~rKVDthvh~sacMnqk~LLrFIk~ 229 (1453)
T PTZ00310 202 FSPCTKVDNAVLLSTSVDAQELLEFVVT 229 (1453)
T ss_pred eeecceeecccchhccCCHHHHHHHHHH
Confidence 4578999999999999999999986554
No 43
>cd08207 RLP_NonPhot Ribulose bisphosphate carboxylase like proteins from nonphototrophic bacteria. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions. The specific function of this subgroup is unknown.
Probab=41.36 E-value=2.5e+02 Score=25.67 Aligned_cols=94 Identities=13% Similarity=0.192 Sum_probs=61.2
Q ss_pred CHHHHHHhhHH------HHH-hcCCHHHHHHHHHHHHHHHHhCCCeEE---EEeeCcCccccCCCCHHHHHHHHHHHHHh
Q 028114 53 SLHEVFKLFDL------IHV-LTTDHATVTRITQEVVEDFASENIVYL---ELRTTPKRNESIGMSKRSYMDAVVEGLRA 122 (213)
Q Consensus 53 ~l~~F~~~f~~------~~~-ll~~~~~~~~~~~~~~~~~a~dnV~Y~---Elr~~P~~~~~~~~~~~~~l~~v~~~~~~ 122 (213)
+..+.+..+.+ +.. +=-+++.+.++ +.+++.-||-++ |...+|... +.++.+.++.+++++
T Consensus 133 G~R~llgv~~RPLigtiiKP~~Glsp~~~a~~----~y~~~~GGvD~IKDDE~l~~q~~~-----p~~eRv~~~~~a~~~ 203 (406)
T cd08207 133 GTRRLTGVEDRPLIGTIIKPSVGLTPEETAAL----VRQLAAAGIDFIKDDELLANPPYS-----PLDERVRAVMRVIND 203 (406)
T ss_pred hHHHHhCCCCCceEEEecccccCCCHHHHHHH----HHHHHhCCCCcccccccCCCCCCC-----cHHHHHHHHHHHHHH
Confidence 55566665542 222 33456555554 555666777766 776666543 678999999999998
Q ss_pred hhhhcccccccccccccccccccccccccCCCCCCcEEEEEEEEeCCCCHHHHHHHHHHHHhhC
Q 028114 123 VSAVDVDFASRSIDVRRPVNTKNMNDACNGTRGKKIYVRLLLSIDRRETTEAAMETVKLALEMR 186 (213)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vrlI~~~~R~~~~~~~~~~~~~a~~~~ 186 (213)
+.+ +.| -+.+|..+=.-+++++.+..+.+.+.-
T Consensus 204 a~~-----------------------------eTG--~~~~y~~NiT~~~~em~~ra~~~~~~G 236 (406)
T cd08207 204 HAQ-----------------------------RTG--RKVMYAFNITDDIDEMRRNHDLVVEAG 236 (406)
T ss_pred HHH-----------------------------hhC--CcceEEEecCCCHHHHHHHHHHHHHhC
Confidence 865 334 234555555566899999999888754
No 44
>cd08209 RLP_DK-MTP-1-P-enolase 2,3-diketo-5-methylthiopentyl-1-phosphate enolase. Ribulose bisphosphate carboxylase like proteins (RLPs) similar to B. subtilis YkrW protein, have been identified as 2,3-diketo-5-methylthiopentyl-1-phosphate enolases. They catalyze the tautomerization of 2,3-diketo-5-methylthiopentane 1-phosphate (DK-MTP 1-P). This is an important step in the methionine salvage pathway in which 5-methylthio-D-ribose (MTR) derived from 5'-methylthioadenosine is converted to methionine.
Probab=38.98 E-value=2.6e+02 Score=25.43 Aligned_cols=94 Identities=13% Similarity=0.090 Sum_probs=60.8
Q ss_pred CHHHHHHhhHH------HHH-hcCCHHHHHHHHHHHHHHHHhCCCeEE---EEeeCcCccccCCCCHHHHHHHHHHHHHh
Q 028114 53 SLHEVFKLFDL------IHV-LTTDHATVTRITQEVVEDFASENIVYL---ELRTTPKRNESIGMSKRSYMDAVVEGLRA 122 (213)
Q Consensus 53 ~l~~F~~~f~~------~~~-ll~~~~~~~~~~~~~~~~~a~dnV~Y~---Elr~~P~~~~~~~~~~~~~l~~v~~~~~~ 122 (213)
+..+.+..+.+ +.. +=-+++.+.++ +.+++.-||-++ |...++... +.++.+.++.+.+++
T Consensus 114 G~R~~lgv~~RPL~~tiiKP~~Glsp~~~a~~----~y~~~~GGvD~IKDDE~l~~q~~~-----p~~eRv~a~~~a~~~ 184 (391)
T cd08209 114 GIRQRLGVHDRPLLMSIFKGVLGLDLDDLAEQ----LREQALGGVDLIKDDEILFDNPLA-----PALERIRACRPVLQE 184 (391)
T ss_pred HHHHHhCCCCCceEEeeeccccCCCHHHHHHH----HHHHHhCCCCcccccccCCCCCCC-----CHHHHHHHHHHHHHH
Confidence 55566665542 222 33455555554 555666777766 666665543 778999999999998
Q ss_pred hhhhcccccccccccccccccccccccccCCCCCCcEEEEEEEEeCCCCHHHHHHHHHHHHhhC
Q 028114 123 VSAVDVDFASRSIDVRRPVNTKNMNDACNGTRGKKIYVRLLLSIDRRETTEAAMETVKLALEMR 186 (213)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vrlI~~~~R~~~~~~~~~~~~~a~~~~ 186 (213)
+.+ ++| -+.+|.++=.-+.+++.+..+.+.+.-
T Consensus 185 a~~-----------------------------eTG--~~~~ya~NiT~~~~em~~ra~~~~~~G 217 (391)
T cd08209 185 VYE-----------------------------QTG--RRTLYAVNLTGPVFTLKEKARRLVEAG 217 (391)
T ss_pred HHH-----------------------------hhC--CcceEEEEcCCCHHHHHHHHHHHHHhC
Confidence 865 334 234455555566889999999888753
No 45
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=37.95 E-value=1.7e+02 Score=25.54 Aligned_cols=127 Identities=16% Similarity=0.197 Sum_probs=64.9
Q ss_pred CCCHHHHHHHHHHhccCCCCC--chhhhHHHhcCCCCHHHHHHhhHHHH----HhcCCHHHHHHHHHHHHHHHHhCCCeE
Q 028114 19 SIRDSTLLELARVLGEKGVIV--FSDVEHVIMKSDRSLHEVFKLFDLIH----VLTTDHATVTRITQEVVEDFASENIVY 92 (213)
Q Consensus 19 si~~~tl~~la~~~~~~g~~~--~~~~~~~~~~~~~~l~~F~~~f~~~~----~ll~~~~~~~~~~~~~~~~~a~dnV~Y 92 (213)
.++.+.+.+++....+.|+.- ++--|-+ -..++.++++...... -.+.|.- .++.+.++++.+-|+..
T Consensus 44 ~ls~eei~~li~~~~~~Gv~~I~~tGGEPl---lr~dl~~li~~i~~~~~l~~i~itTNG---~ll~~~~~~L~~aGl~~ 117 (329)
T PRK13361 44 VLSLEELAWLAQAFTELGVRKIRLTGGEPL---VRRGCDQLVARLGKLPGLEELSLTTNG---SRLARFAAELADAGLKR 117 (329)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEECcCCC---ccccHHHHHHHHHhCCCCceEEEEeCh---hHHHHHHHHHHHcCCCe
Confidence 477888888776432344421 1100000 1134445544332211 1123322 22346778888889988
Q ss_pred EEEeeCc---Cccc--cCCCCHHHHHHHHHHHHHhhhhhcccccccccccccccccccccccccCCCCCCc-EEEEEEEE
Q 028114 93 LELRTTP---KRNE--SIGMSKRSYMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKNMNDACNGTRGKKI-YVRLLLSI 166 (213)
Q Consensus 93 ~Elr~~P---~~~~--~~~~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-~vrlI~~~ 166 (213)
+=+-+.- ..+. ..+-+ ++.+.++++.+.+ .|+ .+++-..+
T Consensus 118 v~ISlDs~~~e~~~~i~~~g~----~~~vl~~i~~~~~------------------------------~Gi~~v~in~v~ 163 (329)
T PRK13361 118 LNISLDTLRPELFAALTRNGR----LERVIAGIDAAKA------------------------------AGFERIKLNAVI 163 (329)
T ss_pred EEEEeccCCHHHhhhhcCCCC----HHHHHHHHHHHHH------------------------------cCCCceEEEEEE
Confidence 7776542 2221 11223 4455556655532 244 45554445
Q ss_pred eCCCCHHHHHHHHHHHHhh
Q 028114 167 DRRETTEAAMETVKLALEM 185 (213)
Q Consensus 167 ~R~~~~~~~~~~~~~a~~~ 185 (213)
.++.+.++..+.++++.++
T Consensus 164 ~~g~N~~ei~~~~~~~~~~ 182 (329)
T PRK13361 164 LRGQNDDEVLDLVEFCRER 182 (329)
T ss_pred ECCCCHHHHHHHHHHHHhc
Confidence 6777788888888888765
No 46
>COG0854 PdxJ Pyridoxal phosphate biosynthesis protein [Coenzyme metabolism]
Probab=36.72 E-value=2.6e+02 Score=23.62 Aligned_cols=84 Identities=21% Similarity=0.207 Sum_probs=50.5
Q ss_pred eeeccccCCCCCHHHHHHHHHHhccCCCCC-chhhhHHHhcCCCCHHHHHHhhHHH-------------HHhcCCHHHHH
Q 028114 10 VELHAHLNGSIRDSTLLELARVLGEKGVIV-FSDVEHVIMKSDRSLHEVFKLFDLI-------------HVLTTDHATVT 75 (213)
Q Consensus 10 ~eLH~HL~Gsi~~~tl~~la~~~~~~g~~~-~~~~~~~~~~~~~~l~~F~~~f~~~-------------~~ll~~~~~~~ 75 (213)
++.+.-|+|+++-+. +.++.+..-+.+++ ++..+++- ...+|+ |......+ -+++-+++
T Consensus 62 ~~~~~NlE~a~teEm-l~ia~~~kP~~vtLVPe~r~evT--TegGlD-~~~~~~~l~~~v~~L~~~GirVSLFiD~d--- 134 (243)
T COG0854 62 IDTRFNLEMAPTEEM-LAIALKTKPHQVTLVPEKREEVT--TEGGLD-VAGQLDKLRDAVRRLKNAGIRVSLFIDPD--- 134 (243)
T ss_pred cccceecccCchHHH-HHHHHhcCCCeEEeCCCchhhcc--cccchh-hhhhhhhHHHHHHHHHhCCCeEEEEeCCC---
Confidence 556688999999888 88988632233444 33333322 223442 33222211 12444432
Q ss_pred HHHHHHHHHHHhCCCeEEEEeeCcCccc
Q 028114 76 RITQEVVEDFASENIVYLELRTTPKRNE 103 (213)
Q Consensus 76 ~~~~~~~~~~a~dnV~Y~Elr~~P~~~~ 103 (213)
.+.++.+++-|..++|+-++|+...
T Consensus 135 ---~~qi~aa~~~gA~~IELhTG~Ya~~ 159 (243)
T COG0854 135 ---PEQIEAAAEVGAPRIELHTGPYADA 159 (243)
T ss_pred ---HHHHHHHHHhCCCEEEEeccccccc
Confidence 3567888899999999999997754
No 47
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=35.19 E-value=2.7e+02 Score=23.32 Aligned_cols=89 Identities=11% Similarity=0.071 Sum_probs=54.6
Q ss_pred HHHHHHhCCCeEEEEeeCcCcc---ccCCCCHHHHHHHHHHHHHhhhhhcccccccccccccccccccccccccCCCCCC
Q 028114 81 VVEDFASENIVYLELRTTPKRN---ESIGMSKRSYMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKNMNDACNGTRGKK 157 (213)
Q Consensus 81 ~~~~~a~dnV~Y~Elr~~P~~~---~~~~~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (213)
-++.+.+-|+.++-+-++-... ..-+.+.++.++.+.+.++.+++ .|
T Consensus 74 ~v~~a~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~------------------------------~G 123 (259)
T cd07939 74 DIEAALRCGVTAVHISIPVSDIHLAHKLGKDRAWVLDQLRRLVGRAKD------------------------------RG 123 (259)
T ss_pred HHHHHHhCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHH------------------------------CC
Confidence 3455667788776665542221 23467889999999999988763 35
Q ss_pred cEEEEEEEEeCCCCHHHHHHHHHHHHhhCCCCeEEEecCCCC
Q 028114 158 IYVRLLLSIDRRETTEAAMETVKLALEMRDLGVVGIDLSGNP 199 (213)
Q Consensus 158 i~vrlI~~~~R~~~~~~~~~~~~~a~~~~~~~vvG~dL~G~E 199 (213)
+.+.+-+...-..+++...+.++.+.+...+.|.=-|-+|.-
T Consensus 124 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~G~~~i~l~DT~G~~ 165 (259)
T cd07939 124 LFVSVGAEDASRADPDFLIEFAEVAQEAGADRLRFADTVGIL 165 (259)
T ss_pred CeEEEeeccCCCCCHHHHHHHHHHHHHCCCCEEEeCCCCCCC
Confidence 555532222223568888778777766544445555666644
No 48
>TIGR03326 rubisco_III ribulose bisphosphate carboxylase, type III. Members of this protein family are the archaeal, single chain, type III form of ribulose bisphosphate carboxylase, or RuBisCO. Members act is a three-step pathway for conversion of the sugar moiety of AMP to two molecules of 3-phosphoglycerate. Many of these species use ADP-dependent sugar kinases, which form AMP, for glycolysis.
Probab=34.29 E-value=3.7e+02 Score=24.67 Aligned_cols=105 Identities=13% Similarity=0.077 Sum_probs=64.7
Q ss_pred CHHHHHHhhHH------HHH-hcCCHHHHHHHHHHHHHHHHhCCCeEE---EEeeCcCccccCCCCHHHHHHHHHHHHHh
Q 028114 53 SLHEVFKLFDL------IHV-LTTDHATVTRITQEVVEDFASENIVYL---ELRTTPKRNESIGMSKRSYMDAVVEGLRA 122 (213)
Q Consensus 53 ~l~~F~~~f~~------~~~-ll~~~~~~~~~~~~~~~~~a~dnV~Y~---Elr~~P~~~~~~~~~~~~~l~~v~~~~~~ 122 (213)
+..+.+..+.+ +.. +=-+++.+. +++.+++.-||-++ |...++... +.++.+.++.+++++
T Consensus 134 G~R~~lgv~~RPL~gtiiKP~~Glsp~~~a----~~~~~~~~GGvD~IKDDE~l~~q~~~-----p~~eRv~~~~~a~~~ 204 (412)
T TIGR03326 134 GVREFLGIKDRPLLGTVPKPKVGLSTEEHA----KVAYELWSGGVDLLKDDENLTSQPFN-----RFEERVEKLYKVRDK 204 (412)
T ss_pred hHHHHhCCCCCceEEeeccccccCChHHHH----HHHHHHHhcCCceeecCCCCCCCCCc-----cHHHHHHHHHHHHHH
Confidence 55555555542 222 234455554 45666777888877 665555443 678999999999998
Q ss_pred hhhhcccccccccccccccccccccccccCCCCCCcEEEEEEEEeCCCCHHHHHHHHHHHHhhCCC-CeEEEecCC
Q 028114 123 VSAVDVDFASRSIDVRRPVNTKNMNDACNGTRGKKIYVRLLLSIDRRETTEAAMETVKLALEMRDL-GVVGIDLSG 197 (213)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vrlI~~~~R~~~~~~~~~~~~~a~~~~~~-~vvG~dL~G 197 (213)
+.+ ++|- +-+|..+=.-+++++.+..+.+.+.-.+ ..|-+..+|
T Consensus 205 a~~-----------------------------eTG~--~~~ya~NiT~~~~em~~ra~~~~~~G~~~~mv~~~~~G 249 (412)
T TIGR03326 205 VEA-----------------------------ETGE--RKEYLANITAPVREMERRAELVADLGGQYVMVDVVVCG 249 (412)
T ss_pred HHH-----------------------------HhCC--cceEEEEecCCHHHHHHHHHHHHHhCCCeEEEEeeccc
Confidence 865 3342 3345555556688999999988875322 233444444
No 49
>PRK06380 metal-dependent hydrolase; Provisional
Probab=34.14 E-value=87 Score=28.08 Aligned_cols=14 Identities=36% Similarity=0.650 Sum_probs=11.6
Q ss_pred CCc-eeeccccCCCC
Q 028114 7 MPK-VELHAHLNGSI 20 (213)
Q Consensus 7 lPK-~eLH~HL~Gsi 20 (213)
||- +|.|+|+..+.
T Consensus 53 ~PG~Vd~H~Hl~~~~ 67 (418)
T PRK06380 53 MPGLINTHAHVGMTA 67 (418)
T ss_pred ccCEEeeccCCCccc
Confidence 787 99999997663
No 50
>PRK06687 chlorohydrolase; Validated
Probab=34.13 E-value=3.4e+02 Score=24.23 Aligned_cols=15 Identities=33% Similarity=0.337 Sum_probs=12.3
Q ss_pred CCc-eeeccccCCCCC
Q 028114 7 MPK-VELHAHLNGSIR 21 (213)
Q Consensus 7 lPK-~eLH~HL~Gsi~ 21 (213)
||- ++.|+|+.-+.-
T Consensus 57 ~PGlIn~H~H~~~~~~ 72 (419)
T PRK06687 57 MPGLVNCHTHSAMTGL 72 (419)
T ss_pred ccceeeeccCCCcccc
Confidence 787 999999977653
No 51
>cd08557 PI-PLCc_bacteria_like Catalytic domain of bacterial phosphatidylinositol-specific phospholipase C and similar proteins. This subfamily corresponds to the catalytic domain present in bacterial phosphatidylinositol-specific phospholipase C (PI-PLC, EC 4.6.1.13) and their sequence homologs found in eukaryota. Bacterial PI-PLCs participate in Ca2+-independent PI metabolism, hydrolyzing the membrane lipid phosphatidylinositol (PI) to produce phosphorylated myo-inositol and diacylglycerol (DAG). Although their precise physiological function remains unclear, bacterial PI-PLCs may function as virulence factors in some pathogenic bacteria. Bacterial PI-PLCs contain a single TIM-barrel type catalytic domain. Its catalytic mechanism is based on general base and acid catalysis utilizing two well conserved histidines, and consists of two steps, a phosphotransfer and a phosphodiesterase reaction. Eukaryotic homologs in this family are named as phosphatidylinositol-specific phospholipase C X
Probab=31.97 E-value=57 Score=27.16 Aligned_cols=21 Identities=24% Similarity=0.401 Sum_probs=15.9
Q ss_pred HHHHHHhCCCeEEEEeeCcCc
Q 028114 81 VVEDFASENIVYLELRTTPKR 101 (213)
Q Consensus 81 ~~~~~a~dnV~Y~Elr~~P~~ 101 (213)
-+.++...||+|+|||+....
T Consensus 42 ~i~~QL~~GiR~~dlr~~~~~ 62 (271)
T cd08557 42 SITDQLDAGVRYLDLRVAYDP 62 (271)
T ss_pred CHHHHHhcCceEEEEEeeeec
Confidence 345566699999999988643
No 52
>COG4464 CapC Capsular polysaccharide biosynthesis protein [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=31.89 E-value=42 Score=28.22 Aligned_cols=29 Identities=24% Similarity=0.468 Sum_probs=23.9
Q ss_pred eeecccc-----CCCCCHHHHHHHHHHhccCCCC
Q 028114 10 VELHAHL-----NGSIRDSTLLELARVLGEKGVI 38 (213)
Q Consensus 10 ~eLH~HL-----~Gsi~~~tl~~la~~~~~~g~~ 38 (213)
+|.|||+ +|+=+.++-+.+++...+.|+.
T Consensus 2 IDIH~HIlp~iDDGp~s~eesl~ml~~A~~qGvt 35 (254)
T COG4464 2 IDIHSHILPDIDDGPKSLEESLAMLREAVRQGVT 35 (254)
T ss_pred ccccccccCCCCCCCCcHHHHHHHHHHHHHcCce
Confidence 6899997 8999999999887765567774
No 53
>PRK05672 dnaE2 error-prone DNA polymerase; Validated
Probab=30.90 E-value=43 Score=34.42 Aligned_cols=24 Identities=42% Similarity=0.573 Sum_probs=20.7
Q ss_pred ceeeccc-----cCCCCCHHHHHHHHHHh
Q 028114 9 KVELHAH-----LNGSIRDSTLLELARVL 32 (213)
Q Consensus 9 K~eLH~H-----L~Gsi~~~tl~~la~~~ 32 (213)
.+|||+| |+|+++++.+++.|++.
T Consensus 5 fv~LHvHT~ySlLdg~~~~~elv~~A~~~ 33 (1046)
T PRK05672 5 YAELHCHSNFSFLDGASHPEELVERAARL 33 (1046)
T ss_pred eeeccccccCcccccCCCHHHHHHHHHHc
Confidence 5999999 46779999999999874
No 54
>PF09999 DUF2240: Uncharacterized protein conserved in archaea (DUF2240); InterPro: IPR018716 This family of various hypothetical archaeal proteins has no known function.
Probab=30.53 E-value=1.1e+02 Score=23.94 Aligned_cols=40 Identities=25% Similarity=0.237 Sum_probs=30.9
Q ss_pred EEEEEEEeCC-CCHHHHHHHHHHHHhh----C-C-CCeEEEecCCCC
Q 028114 160 VRLLLSIDRR-ETTEAAMETVKLALEM----R-D-LGVVGIDLSGNP 199 (213)
Q Consensus 160 vrlI~~~~R~-~~~~~~~~~~~~a~~~----~-~-~~vvG~dL~G~E 199 (213)
.=+.++.+|. ++|+.+.+.++.|.+- + + ..+..||..+-+
T Consensus 23 fv~~Ls~D~~WmspdqAk~li~~A~~eGLl~~~~~~l~~~Fd~~~v~ 69 (144)
T PF09999_consen 23 FVFALSFDRKWMSPDQAKRLIDEAIEEGLLEEEGGYLVPNFDPSEVE 69 (144)
T ss_pred eEeeEeeecCCCCHHHHHHHHHHHHHCCCeeecCCEEEEecCccccc
Confidence 5567888887 6999999999999863 1 2 246689998865
No 55
>PF13918 PLDc_3: PLD-like domain
Probab=30.25 E-value=65 Score=26.01 Aligned_cols=56 Identities=20% Similarity=0.345 Sum_probs=37.7
Q ss_pred hCCCeEEEEe-eCcCccccCCCCHHHHHHHHHHHHHhhhhhcccccccccccccccccccccccccCCCCCCcEEEEEEE
Q 028114 87 SENIVYLELR-TTPKRNESIGMSKRSYMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKNMNDACNGTRGKKIYVRLLLS 165 (213)
Q Consensus 87 ~dnV~Y~Elr-~~P~~~~~~~~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vrlI~~ 165 (213)
|+.-+|+++| +.|..... .+..++-.+-++++++- -+-||+||++++
T Consensus 94 A~~fI~IsVMdY~P~~~~~---~~~~YWP~ID~ALR~AA-----------------------------~~R~V~VRlLIS 141 (177)
T PF13918_consen 94 AKKFIYISVMDYLPTSRYS---KPNRYWPVIDDALRRAA-----------------------------IERGVKVRLLIS 141 (177)
T ss_pred HhheEEEEEeecCCeeecC---CCCCcchhHHHHHHHHH-----------------------------HHcCCeEEEEEe
Confidence 5677999998 44644321 22345666666766552 145999999999
Q ss_pred EeCCCCHHH
Q 028114 166 IDRRETTEA 174 (213)
Q Consensus 166 ~~R~~~~~~ 174 (213)
.-++.+|..
T Consensus 142 ~W~ht~p~~ 150 (177)
T PF13918_consen 142 CWKHTDPSM 150 (177)
T ss_pred ecCCCChhH
Confidence 999888753
No 56
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=29.90 E-value=4.1e+02 Score=23.80 Aligned_cols=90 Identities=13% Similarity=0.113 Sum_probs=57.9
Q ss_pred HHHHHHHHhCCCeEEEEeeCcCcc---ccCCCCHHHHHHHHHHHHHhhhhhcccccccccccccccccccccccccCCCC
Q 028114 79 QEVVEDFASENIVYLELRTTPKRN---ESIGMSKRSYMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKNMNDACNGTRG 155 (213)
Q Consensus 79 ~~~~~~~a~dnV~Y~Elr~~P~~~---~~~~~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (213)
.+-++.+.+-|+..+-+.++.+.. ..-+.+.++.++.+.+.++.+++
T Consensus 78 ~~di~~a~~~g~~~i~i~~~~Sd~h~~~~~~~s~~~~l~~~~~~v~~a~~------------------------------ 127 (378)
T PRK11858 78 KSDIDASIDCGVDAVHIFIATSDIHIKHKLKKTREEVLERMVEAVEYAKD------------------------------ 127 (378)
T ss_pred HHHHHHHHhCCcCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH------------------------------
Confidence 344566667788877776654331 23478999999999999988753
Q ss_pred CCcEEEEEE-EEeCCCCHHHHHHHHHHHHhhCCCCeEEEecCCCC
Q 028114 156 KKIYVRLLL-SIDRRETTEAAMETVKLALEMRDLGVVGIDLSGNP 199 (213)
Q Consensus 156 ~~i~vrlI~-~~~R~~~~~~~~~~~~~a~~~~~~~vvG~dL~G~E 199 (213)
.|..+.+-+ +..| .+++...+.++.+.+..-..|+=-|-+|.=
T Consensus 128 ~G~~v~~~~ed~~r-~~~~~l~~~~~~~~~~Ga~~I~l~DT~G~~ 171 (378)
T PRK11858 128 HGLYVSFSAEDASR-TDLDFLIEFAKAAEEAGADRVRFCDTVGIL 171 (378)
T ss_pred CCCeEEEEeccCCC-CCHHHHHHHHHHHHhCCCCEEEEeccCCCC
Confidence 355555543 3334 567788888877776544445545666643
No 57
>cd08208 RLP_Photo Ribulose bisphosphate carboxylase like proteins from phototrophic bacteria. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions. The specific function of this subgroup is unknown.
Probab=29.42 E-value=4.4e+02 Score=24.30 Aligned_cols=78 Identities=8% Similarity=-0.032 Sum_probs=52.5
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCeEE---EEeeCcCccccCCCCHHHHHHHHHHHHHhhhhhccccccccccccccccccc
Q 028114 69 TDHATVTRITQEVVEDFASENIVYL---ELRTTPKRNESIGMSKRSYMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKN 145 (213)
Q Consensus 69 ~~~~~~~~~~~~~~~~~a~dnV~Y~---Elr~~P~~~~~~~~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (213)
-+++.+.+ ++.+++.-||-++ |...++... +.++.+.++.++++++.+
T Consensus 173 Lsp~~~a~----~~y~~~~GGvD~IKDDE~l~~q~f~-----p~~eRv~~~~~ai~~a~~-------------------- 223 (424)
T cd08208 173 LPPGEFAE----LGYQSWLGGLDIAKDDEMLADVDWC-----PLEERAALLGKARRRAEA-------------------- 223 (424)
T ss_pred CCHHHHHH----HHHHHHcCCcccccccccccCCCCC-----CHHHHHHHHHHHHHHHHH--------------------
Confidence 44555544 4555667788777 776666543 678999999999999865
Q ss_pred ccccccCCCCCCcEEEEEEEEeCCCCHHHHHHHHHHHHhhC
Q 028114 146 MNDACNGTRGKKIYVRLLLSIDRRETTEAAMETVKLALEMR 186 (213)
Q Consensus 146 ~~~~~~~~~~~~i~vrlI~~~~R~~~~~~~~~~~~~a~~~~ 186 (213)
++|-.. ++.++=.-+++++.+..+.+.+.-
T Consensus 224 ---------eTG~~~--~ya~NiT~~~~em~~ra~~a~~~G 253 (424)
T cd08208 224 ---------ETGVPK--IYLANITDEVDRLMELHDVAVRNG 253 (424)
T ss_pred ---------hhCCcc--eEEEEccCCHHHHHHHHHHHHHhC
Confidence 334223 344443447889999988888753
No 58
>TIGR00193 urease_gam urease, gamma subunit. Nomenclature for the various subunits of urease in Helicobacter differs from nomenclature in most other species.
Probab=28.90 E-value=15 Score=26.85 Aligned_cols=53 Identities=21% Similarity=0.167 Sum_probs=37.9
Q ss_pred hcCCHHHHHHHHHHHHHHHHhCCCeEEEEeeCcCccccCCCCHHHHHHHHHHHHHhhh
Q 028114 67 LTTDHATVTRITQEVVEDFASENIVYLELRTTPKRNESIGMSKRSYMDAVVEGLRAVS 124 (213)
Q Consensus 67 ll~~~~~~~~~~~~~~~~~a~dnV~Y~Elr~~P~~~~~~~~~~~~~l~~v~~~~~~~~ 124 (213)
-++++|++..++.++++ .+.||-.+.|++..-. .=++.+++++.|-+-+...+
T Consensus 29 kLN~pEAvAlIs~~v~E-~aRdG~svaelm~~g~----~~L~~~dVm~GV~~mi~~vq 81 (102)
T TIGR00193 29 KLNYPEAVAYISAHIME-GARDGKKVAELMQYGR----TLLTPDDVMEGVAEMLHEVQ 81 (102)
T ss_pred ccCcHHHHHHHHHHHHH-HhhcCCcHHHHHHHHH----hhCCHHhcccCHHHhhccee
Confidence 46889998776666655 5899988888865322 23677888888888776653
No 59
>TIGR02635 RhaI_grampos L-rhamnose isomerase, Streptomyces subtype. This clade of sequences is closely related to the L-rhamnose isomerases found in Pseudomonas stutzeri and in a number of the Rhizobiales (TIGR02629). The genes of the family represented here are found in similar genomic contexts which contain genes apparently involved in rhamnose catabolism such as rhamnulose-1-phosphate aldolase (TIGR02632), sugar kinases, and sugar transporters.
Probab=28.64 E-value=4.5e+02 Score=23.83 Aligned_cols=103 Identities=17% Similarity=0.107 Sum_probs=57.9
Q ss_pred CCceeeccccCCCCCHHHHHHHHHHhccCCCCCch-hhhHHHhcCCCCHHHHHHhhHHHHHhcCCHHHHHHHHHHH----
Q 028114 7 MPKVELHAHLNGSIRDSTLLELARVLGEKGVIVFS-DVEHVIMKSDRSLHEVFKLFDLIHVLTTDHATVTRITQEV---- 81 (213)
Q Consensus 7 lPK~eLH~HL~Gsi~~~tl~~la~~~~~~g~~~~~-~~~~~~~~~~~~l~~F~~~f~~~~~ll~~~~~~~~~~~~~---- 81 (213)
-|+++||.+-+.....+.+.+++++ +|+.+.. ... ++ +...| . ..++...-+.+++..-+.
T Consensus 56 ~~~v~lH~~~d~~~d~~~~~~~l~~---~GL~v~~i~p~-~f-----~~~~~----~-~GSLt~pD~~vR~~AIe~~k~~ 121 (378)
T TIGR02635 56 CPTVALHIPWDRVEDYEELARYAEE---LGLKIGAINPN-LF-----QDDDY----K-FGSLTHPDKRIRRKAIDHLLEC 121 (378)
T ss_pred CCceeeccCCccccCHHHHHHHHHH---cCCceeeeeCC-cc-----CCccc----C-CCCCCCCCHHHHHHHHHHHHHH
Confidence 3779999998888889999999985 6765411 000 00 00111 1 113344444445444444
Q ss_pred HHHHHhCCCeEEEEeeCcCccccCC-CCHHHHHHHHHHHHHhhh
Q 028114 82 VEDFASENIVYLELRTTPKRNESIG-MSKRSYMDAVVEGLRAVS 124 (213)
Q Consensus 82 ~~~~a~dnV~Y~Elr~~P~~~~~~~-~~~~~~l~~v~~~~~~~~ 124 (213)
++-+.+-|-..+ ..+.|......+ .+.++.++.+.+++++.-
T Consensus 122 idiA~eLGa~~I-~iW~~DG~~~~g~~~~~~a~~rl~esL~eI~ 164 (378)
T TIGR02635 122 VDIAKKTGSKDI-SLWLADGTNYPGQDDFRSRKDRLEESLAEVY 164 (378)
T ss_pred HHHHHHhCCCeE-EEecCCcCcCCcccCHHHHHHHHHHHHHHHH
Confidence 434445677665 333343233333 566777788888888775
No 60
>TIGR03583 EF_0837 probable amidohydrolase EF_0837/AHA_3915. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. These proteins resemble aminohydrolases (see pfam01979), including dihydroorotases. The function is unknown.
Probab=28.35 E-value=27 Score=30.76 Aligned_cols=30 Identities=17% Similarity=0.180 Sum_probs=18.9
Q ss_pred cCCc-eeeccccC--CCCCHHHHHHHHHHhccCCCC
Q 028114 6 SMPK-VELHAHLN--GSIRDSTLLELARVLGEKGVI 38 (213)
Q Consensus 6 ~lPK-~eLH~HL~--Gsi~~~tl~~la~~~~~~g~~ 38 (213)
-+|. +|+|+|+. +....++.-+.+. ..|+.
T Consensus 48 l~PG~ID~H~H~~~~~~~~~~~~~~~a~---~~GvT 80 (365)
T TIGR03583 48 VSAGWIDDHTHCFPKSALYYDEPDEIGV---KTGVT 80 (365)
T ss_pred EecCEEEeeeccCCCcccccCCHhHhhh---cCcee
Confidence 4788 99999998 4434444444454 35653
No 61
>cd01295 AdeC Adenine deaminase (AdeC) directly deaminates adenine to form hypoxanthine. This reaction is part of one of the adenine salvage pathways, as well as the degradation pathway. It is important for adenine utilization as a purine, as well as a nitrogen source in bacteria and archea.
Probab=27.95 E-value=56 Score=29.59 Aligned_cols=30 Identities=20% Similarity=0.410 Sum_probs=21.3
Q ss_pred cCCc-eeeccccCCC-CCHHHHHHHHHHhccCCCC
Q 028114 6 SMPK-VELHAHLNGS-IRDSTLLELARVLGEKGVI 38 (213)
Q Consensus 6 ~lPK-~eLH~HL~Gs-i~~~tl~~la~~~~~~g~~ 38 (213)
-+|- +|.|+|++.+ .+++.+.+.|. ..|+.
T Consensus 7 v~PG~ID~H~Hi~~~~~~~~~~~~~a~---~~GvT 38 (422)
T cd01295 7 IVPGFIDAHLHIESSMLTPSEFAKAVL---PHGTT 38 (422)
T ss_pred EccCEEEccCCcCCCCCChHHHHHHHH---CCCcE
Confidence 3687 8999999875 56667666555 35663
No 62
>PRK07572 cytosine deaminase; Validated
Probab=27.69 E-value=56 Score=29.59 Aligned_cols=28 Identities=0% Similarity=0.001 Sum_probs=18.5
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCeEEEEe
Q 028114 69 TDHATVTRITQEVVEDFASENIVYLELR 96 (213)
Q Consensus 69 ~~~~~~~~~~~~~~~~~a~dnV~Y~Elr 96 (213)
.+++++...+...++++.+.|+.++=-.
T Consensus 91 ~t~edl~~~a~~~~~e~l~~G~Ttvrd~ 118 (426)
T PRK07572 91 LTQEALVERALRYCDWAVARGLLAIRSH 118 (426)
T ss_pred CCHHHHHHHHHHHHHHHHHcCcccEeec
Confidence 4566777777777777777777655443
No 63
>CHL00040 rbcL ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit
Probab=27.50 E-value=4.9e+02 Score=24.39 Aligned_cols=94 Identities=13% Similarity=0.032 Sum_probs=61.3
Q ss_pred CHHHHHHhhHH------HHH-hcCCHHHHHHHHHHHHHHHHhCCCeEE---EEeeCcCccccCCCCHHHHHHHHHHHHHh
Q 028114 53 SLHEVFKLFDL------IHV-LTTDHATVTRITQEVVEDFASENIVYL---ELRTTPKRNESIGMSKRSYMDAVVEGLRA 122 (213)
Q Consensus 53 ~l~~F~~~f~~------~~~-ll~~~~~~~~~~~~~~~~~a~dnV~Y~---Elr~~P~~~~~~~~~~~~~l~~v~~~~~~ 122 (213)
+..+.+..+.+ +.. +=-+++.+.+ ++.+++.-||-++ |...++... +.++.+.++.+++++
T Consensus 157 G~R~llgv~~RPLigtiiKP~~GLsp~~~A~----~~y~~~~GGvD~IKDDE~l~dq~~~-----p~~eRv~~~~~a~~~ 227 (475)
T CHL00040 157 VERDKLNKYGRPLLGCTIKPKLGLSAKNYGR----AVYECLRGGLDFTKDDENVNSQPFM-----RWRDRFLFCAEAIYK 227 (475)
T ss_pred hHHHHhCCCCCceEEEecccccCCCHHHHHH----HHHHHHcCCCcccccCccCCCCCCC-----CHHHHHHHHHHHHHH
Confidence 55566665542 222 3345555554 4556667788777 666665543 778999999999998
Q ss_pred hhhhcccccccccccccccccccccccccCCCCCCcEEEEEEEEeCC-CCHHHHHHHHHHHHhhC
Q 028114 123 VSAVDVDFASRSIDVRRPVNTKNMNDACNGTRGKKIYVRLLLSIDRR-ETTEAAMETVKLALEMR 186 (213)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vrlI~~~~R~-~~~~~~~~~~~~a~~~~ 186 (213)
+.+ +.| -+-++.++=. -+++++.+..+.+.+.-
T Consensus 228 a~~-----------------------------eTG--~~~~y~~NiTa~~~~em~~ra~~a~e~G 261 (475)
T CHL00040 228 AQA-----------------------------ETG--EIKGHYLNATAGTCEEMYKRAVFARELG 261 (475)
T ss_pred HHH-----------------------------hhC--CcceeeeccCCCCHHHHHHHHHHHHHcC
Confidence 865 334 2445555545 46889999999988753
No 64
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=26.97 E-value=3.6e+02 Score=22.15 Aligned_cols=91 Identities=13% Similarity=0.096 Sum_probs=62.3
Q ss_pred HHHHHHHHhCCCeEEEEeeCcCc-cc--cCCCCHHHHHHHHHHHHHhhhhhcccccccccccccccccccccccccCCCC
Q 028114 79 QEVVEDFASENIVYLELRTTPKR-NE--SIGMSKRSYMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKNMNDACNGTRG 155 (213)
Q Consensus 79 ~~~~~~~a~dnV~Y~Elr~~P~~-~~--~~~~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (213)
.+.++.+.+-|+..+=+-..... +. ..+.+.++.++.+.+.++.++ +
T Consensus 77 ~~~i~~a~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~------------------------------~ 126 (265)
T cd03174 77 EKGIERALEAGVDEVRIFDSASETHSRKNLNKSREEDLENAEEAIEAAK------------------------------E 126 (265)
T ss_pred hhhHHHHHhCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHH------------------------------H
Confidence 55677777778777666655432 11 234677788899999988875 3
Q ss_pred CCcEEEEEE-EEeC-CCCHHHHHHHHHHHHhhCCCCeEEEecCCCC
Q 028114 156 KKIYVRLLL-SIDR-RETTEAAMETVKLALEMRDLGVVGIDLSGNP 199 (213)
Q Consensus 156 ~~i~vrlI~-~~~R-~~~~~~~~~~~~~a~~~~~~~vvG~dL~G~E 199 (213)
.|+.+.+-+ ++.| ..+++...+.++.+.+...+.|.=.|..|.-
T Consensus 127 ~G~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~i~l~Dt~G~~ 172 (265)
T cd03174 127 AGLEVEGSLEDAFGCKTDPEYVLEVAKALEEAGADEISLKDTVGLA 172 (265)
T ss_pred CCCeEEEEEEeecCCCCCHHHHHHHHHHHHHcCCCEEEechhcCCc
Confidence 477788877 4555 2788888888888887765555555776653
No 65
>PRK07583 cytosine deaminase-like protein; Validated
Probab=26.52 E-value=2.1e+02 Score=26.01 Aligned_cols=14 Identities=36% Similarity=0.681 Sum_probs=11.9
Q ss_pred CCc-eeeccccCCCC
Q 028114 7 MPK-VELHAHLNGSI 20 (213)
Q Consensus 7 lPK-~eLH~HL~Gsi 20 (213)
||- +|-|+||+-+.
T Consensus 74 ~Pg~id~H~Hld~~~ 88 (438)
T PRK07583 74 WPCFVDMHTHLDKGH 88 (438)
T ss_pred cCCcccceeccccce
Confidence 687 99999998874
No 66
>COG1619 LdcA Uncharacterized proteins, homologs of microcin C7 resistance protein MccF [Defense mechanisms]
Probab=26.40 E-value=4.4e+02 Score=23.22 Aligned_cols=84 Identities=8% Similarity=0.097 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHhCCCeEEEEeeCcCccccCCCCHHHHHHHHHHHHHhhhhhcccccccccccccccccccccccccCCC
Q 028114 75 TRITQEVVEDFASENIVYLELRTTPKRNESIGMSKRSYMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKNMNDACNGTR 154 (213)
Q Consensus 75 ~~~~~~~~~~~a~dnV~Y~Elr~~P~~~~~~~~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (213)
...+...++++...|.....-...-.......-+.++.++-+.+.+.
T Consensus 25 ~~~~~~a~~~L~~~G~~v~~~~~i~~~~~~~a~s~~~R~~dL~~af~--------------------------------- 71 (313)
T COG1619 25 TDALKRAIQRLENLGFEVVFGEHILRRDQYFAGSDEERAEDLMSAFS--------------------------------- 71 (313)
T ss_pred HHHHHHHHHHHHHcCCEEEechhhhhccccccCCHHHHHHHHHHHhc---------------------------------
Confidence 35566788888889965554443322222222344677777766653
Q ss_pred CCCcEEEEEEEEeCCCCHHHHHHHHHHHH-hhCCCCeEEE
Q 028114 155 GKKIYVRLLLSIDRRETTEAAMETVKLAL-EMRDLGVVGI 193 (213)
Q Consensus 155 ~~~i~vrlI~~~~R~~~~~~~~~~~~~a~-~~~~~~vvG~ 193 (213)
.-.++.|+|+.-+.+..+....++..+ +..+..++|+
T Consensus 72 --d~~vk~Il~~rGGygs~rlLp~ld~~~i~~~pKifiGy 109 (313)
T COG1619 72 --DPDVKAILCVRGGYGSNRLLPYLDYDLIRNHPKIFIGY 109 (313)
T ss_pred --CCCCeEEEEcccCCChhhhhhhcchHHHhcCCceEEEe
Confidence 224899999988888888888887543 3345667787
No 67
>cd08616 PI-PLCXD1c Catalytic domain of phosphatidylinositol-specific phospholipase C, X domain containing 1. This subfamily corresponds to the catalytic domain present in a group of phosphatidylinositol-specific phospholipase C X domain containing 1 (PI-PLCXD1), 2 (PI-PLCXD2) and 3 (PI-PLCXD3), which are bacterial phosphatidylinositol-specific phospholipase C (PI-PLC, EC 4.6.1.13) sequence homologs found in vertebrates. The typical eukaryotic phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11) has a multidomain organization that consists of a PLC catalytic core domain, and various regulatory domains. The catalytic core domain is assembled from two highly conserved X- and Y-regions split by a divergent linker sequence. In contrast, members in this group contain a single TIM-barrel type catalytic domain, X domain, and are more closely related to bacterial PI-PLCs, which participate in Ca2+-independent PI metabolism, hydrolyzing the membrane lipid phosphatidylinositol (PI) to
Probab=25.89 E-value=1.2e+02 Score=26.23 Aligned_cols=47 Identities=15% Similarity=0.225 Sum_probs=27.3
Q ss_pred HHHHHHhCCCeEEEEeeCcCc-----cccCCCCHHHHHHHHHHHHHhhhhhcc
Q 028114 81 VVEDFASENIVYLELRTTPKR-----NESIGMSKRSYMDAVVEGLRAVSAVDV 128 (213)
Q Consensus 81 ~~~~~a~dnV~Y~Elr~~P~~-----~~~~~~~~~~~l~~v~~~~~~~~~~~~ 128 (213)
-+.+....||+|+++|+.... +...|+-.. .++.+++.+.++-+++|
T Consensus 63 ~i~~QL~~GiRyfDlRv~~~~~~~~~~~~Hg~~~~-~~~~~L~~i~~fl~~~p 114 (290)
T cd08616 63 TITEQLEAGIRYFDLRIATKPKDNDLYFVHGLYGI-LVKEILEEINDFLTEHP 114 (290)
T ss_pred cHHHHHhcCceEEEEEecccCCCCcEEEEEeccch-hHHHHHHHHHHHHHHCC
Confidence 445556699999999997432 112232211 45555666666655444
No 68
>PRK02471 bifunctional glutamate--cysteine ligase/glutathione synthetase; Provisional
Probab=25.18 E-value=1.1e+02 Score=30.25 Aligned_cols=61 Identities=16% Similarity=0.180 Sum_probs=35.5
Q ss_pred CCCHHHHHHhhHH-H-HHhcCCHHHHHHHH----HHHHHHHHhCCCeEEEEeeC-cCccccCCCCHHH
Q 028114 51 DRSLHEVFKLFDL-I-HVLTTDHATVTRIT----QEVVEDFASENIVYLELRTT-PKRNESIGMSKRS 111 (213)
Q Consensus 51 ~~~l~~F~~~f~~-~-~~ll~~~~~~~~~~----~~~~~~~a~dnV~Y~Elr~~-P~~~~~~~~~~~~ 111 (213)
+.+|++|.+.... + .++++++..+.--+ ..-++.+.++||-|+|+|.. -......|++..+
T Consensus 235 ~~s~~~Y~~~l~~~i~~g~l~~~~e~y~~iRpk~~~~~~~l~~~Gv~yiEvR~~D~~p~~~~GI~~~~ 302 (752)
T PRK02471 235 YNSLEDYVSSLENAVESGQLISEKEFYSPVRLRGAKQDRSLLEKGITYLEFRLFDLNPFEPYGISQET 302 (752)
T ss_pred cCCHHHHHHHHHHHHHcCCccccccceeccCCCCCCchHHHHhcCCCEEEEecccCCCCCccCCCHHH
Confidence 5688888876653 2 33445433222111 12466888999999999966 2222344666543
No 69
>PRK06038 N-ethylammeline chlorohydrolase; Provisional
Probab=24.94 E-value=1.6e+02 Score=26.56 Aligned_cols=13 Identities=38% Similarity=0.588 Sum_probs=11.0
Q ss_pred CCc-eeeccccCCC
Q 028114 7 MPK-VELHAHLNGS 19 (213)
Q Consensus 7 lPK-~eLH~HL~Gs 19 (213)
||- +|.|+|++.+
T Consensus 54 ~PG~vd~H~H~~~~ 67 (430)
T PRK06038 54 MPGLVNTHTHAAMT 67 (430)
T ss_pred ecCeeecccCcchh
Confidence 677 9999999865
No 70
>PF07615 Ykof: YKOF-related Family; InterPro: IPR011522 This entry represents YkoF-related proteins. YkoF is involved in the hydroxymethyl pyrimidine (HMP) salvage pathway []. The domain is found in pairs in these proteins.; PDB: 1S7H_A 1S99_A 1SBR_B.
Probab=24.46 E-value=2.4e+02 Score=19.40 Aligned_cols=49 Identities=8% Similarity=0.135 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHhCCCeEEEEeeCcCccccCCCCHHHHHHHHHHHHHhhh
Q 028114 72 ATVTRITQEVVEDFASENIVYLELRTTPKRNESIGMSKRSYMDAVVEGLRAVS 124 (213)
Q Consensus 72 ~~~~~~~~~~~~~~a~dnV~Y~Elr~~P~~~~~~~~~~~~~l~~v~~~~~~~~ 124 (213)
+++-+.+...++.+-..||..- .++..-...| +.+++++.+.+.+..+.
T Consensus 14 ~dy~~~I~~~i~~~~~~gl~~~---t~~~sT~l~G-~~~~Vf~~l~~~~~~a~ 62 (81)
T PF07615_consen 14 DDYMDVILGAIDRLDDSGLWVE---TDHYSTQLRG-DEEDVFDALEAAFERAA 62 (81)
T ss_dssp TTHHHHHHHHHHHCHHTTSEEE---EETTEEEEEC-BHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhhcCcEEe---ecccEEEEEC-CHHHHHHHHHHHHHHHh
Confidence 3677889999999998887654 3332222233 78899999999998875
No 71
>PF13594 Amidohydro_5: Amidohydrolase; PDB: 4F0R_A 4F0S_A 1NFG_C 2FVM_A 2FVK_A 2FTY_D 1YBQ_B 1POJ_B 1ONW_A 2AQO_B ....
Probab=24.34 E-value=24 Score=23.09 Aligned_cols=11 Identities=45% Similarity=1.102 Sum_probs=7.4
Q ss_pred CCc-eeeccccC
Q 028114 7 MPK-VELHAHLN 17 (213)
Q Consensus 7 lPK-~eLH~HL~ 17 (213)
||- +|.|+|+.
T Consensus 33 ~PG~ID~H~H~~ 44 (68)
T PF13594_consen 33 MPGFIDMHTHLG 44 (68)
T ss_dssp EE-EEEEEE-TT
T ss_pred eCCeEeeeeccc
Confidence 677 99999955
No 72
>TIGR00857 pyrC_multi dihydroorotase, multifunctional complex type. All proteins described by this model should represent active and inactive dihydroorotase per se and functionally equivalent domains of multifunctional proteins from higher eukaryotes, but exclude related proteins such as allantoinase.
Probab=24.02 E-value=68 Score=28.89 Aligned_cols=33 Identities=18% Similarity=0.359 Sum_probs=20.6
Q ss_pred cCCc-eeeccccCC--CCCHHHHHHHHHHhccCCCC
Q 028114 6 SMPK-VELHAHLNG--SIRDSTLLELARVLGEKGVI 38 (213)
Q Consensus 6 ~lPK-~eLH~HL~G--si~~~tl~~la~~~~~~g~~ 38 (213)
-+|- +|+|+|+.. ....+++...++.....|+.
T Consensus 37 v~PG~ID~H~H~~~~~~~~~~~~~~~~~~~~~~GvT 72 (411)
T TIGR00857 37 VLPGFIDLHVHLRDPGEEYKEDIESGSKAAAHGGFT 72 (411)
T ss_pred EecCEEEcccCCCCCCCccHhHHHHHHHHHHhCCeE
Confidence 4788 999999963 33456666544433345653
No 73
>COG3360 Uncharacterized conserved protein [Function unknown]
Probab=23.95 E-value=1.1e+02 Score=20.76 Aligned_cols=29 Identities=14% Similarity=0.290 Sum_probs=24.5
Q ss_pred CCHHHHHHHHHHHHHHHHh--CCCeEEEEee
Q 028114 69 TDHATVTRITQEVVEDFAS--ENIVYLELRT 97 (213)
Q Consensus 69 ~~~~~~~~~~~~~~~~~a~--dnV~Y~Elr~ 97 (213)
.+|+.+...+.+.+.+++. ||+.|.|+.-
T Consensus 14 tSp~S~d~Ai~~Ai~RA~~t~~~l~wfeV~~ 44 (71)
T COG3360 14 TSPTSIDAAIANAIARAADTLDNLDWFEVVE 44 (71)
T ss_pred cCCccHHHHHHHHHHHHHhhhhcceEEEEEe
Confidence 5678888999999999985 9999999854
No 74
>TIGR00010 hydrolase, TatD family. Several genomes have multiple paralogs related to this family. However, a set of 17 proteins can be found, one each from 17 of the first 20 genomes, such that each member forms a bidirectional best hit across genomes with all other members of the set. This core set (and one other near-perfect member), but not the other paralogs, form the seed for this model. Additionally, members of the seed alignment and all trusted hits, but not all paralogs, have a conserved motif DxHxH near the amino end. The member from E. coli was recently shown to have DNase activity.
Probab=23.91 E-value=72 Score=25.96 Aligned_cols=25 Identities=28% Similarity=0.400 Sum_probs=17.4
Q ss_pred eeeccccCCCC---CHHHHHHHHHHhccCCC
Q 028114 10 VELHAHLNGSI---RDSTLLELARVLGEKGV 37 (213)
Q Consensus 10 ~eLH~HL~Gsi---~~~tl~~la~~~~~~g~ 37 (213)
+|-|||++-+. .++.+++.+.+ .|+
T Consensus 2 iD~H~Hl~~~~~~~~~~~~~~~~~~---~Gv 29 (252)
T TIGR00010 2 IDAHCHLDFLDFEEDVEEVIERAKA---AGV 29 (252)
T ss_pred EEeccCCCChhhccCHHHHHHHHHH---cCC
Confidence 58899999443 37777776664 565
No 75
>cd08148 RuBisCO_large Ribulose bisphosphate carboxylase large chain. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions.
Probab=23.61 E-value=5.5e+02 Score=23.17 Aligned_cols=95 Identities=15% Similarity=0.143 Sum_probs=60.7
Q ss_pred CCHHHHHHhhHH--HHH----h-cCCHHHHHHHHHHHHHHHHhCCCeEE---EEeeCcCccccCCCCHHHHHHHHHHHHH
Q 028114 52 RSLHEVFKLFDL--IHV----L-TTDHATVTRITQEVVEDFASENIVYL---ELRTTPKRNESIGMSKRSYMDAVVEGLR 121 (213)
Q Consensus 52 ~~l~~F~~~f~~--~~~----l-l~~~~~~~~~~~~~~~~~a~dnV~Y~---Elr~~P~~~~~~~~~~~~~l~~v~~~~~ 121 (213)
.+..+.+..+.+ +.. - =-+++.+. +++.+++.-|+-++ |...++... +.++.+.++.++++
T Consensus 116 ~G~R~~lgv~~RPl~gtiiKP~~Glsp~~~a----~~~y~~~~GG~D~IKDDE~l~~q~~~-----p~~eRv~~~~~a~~ 186 (366)
T cd08148 116 DGIRKLLGVYGRPLVGTIIKPKLGLNPKYTA----EAAYAAALGGLDLIKDDETLTDQPFC-----PLRDRITEVAAALD 186 (366)
T ss_pred hhHHHHhCCCCCceeEeecccccCCCHHHHH----HHHHHHHhCCCCccccccccCCCCCC-----cHHHHHHHHHHHHH
Confidence 355566666542 222 1 23455444 45566777787777 666665543 67899999999999
Q ss_pred hhhhhcccccccccccccccccccccccccCCCCCCcEEEEEEEEeCCCCHHHHHHHHHHHHhhC
Q 028114 122 AVSAVDVDFASRSIDVRRPVNTKNMNDACNGTRGKKIYVRLLLSIDRRETTEAAMETVKLALEMR 186 (213)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vrlI~~~~R~~~~~~~~~~~~~a~~~~ 186 (213)
++.+ ++| -+-+|..+=.-+.+++.+..+.+.+.-
T Consensus 187 ~a~~-----------------------------eTG--~~~~y~~NiT~~~~em~~ra~~~~~~G 220 (366)
T cd08148 187 RVQE-----------------------------ETG--EKKLYAVNVTAGTFEIIERAERALELG 220 (366)
T ss_pred HHHH-----------------------------hhC--CcceEEEEccCCHHHHHHHHHHHHHhC
Confidence 8865 334 234455555566788888888888753
No 76
>PRK00164 moaA molybdenum cofactor biosynthesis protein A; Reviewed
Probab=23.48 E-value=4.4e+02 Score=22.73 Aligned_cols=27 Identities=7% Similarity=0.054 Sum_probs=18.9
Q ss_pred EEEEEEEEeCCCCHHHHHHHHHHHHhh
Q 028114 159 YVRLLLSIDRRETTEAAMETVKLALEM 185 (213)
Q Consensus 159 ~vrlI~~~~R~~~~~~~~~~~~~a~~~ 185 (213)
.+++-+.+.++.+.+++.+.++++.++
T Consensus 160 ~v~i~~vv~~g~n~~ei~~l~~~~~~~ 186 (331)
T PRK00164 160 PVKVNAVLMKGVNDDEIPDLLEWAKDR 186 (331)
T ss_pred cEEEEEEEECCCCHHHHHHHHHHHHhC
Confidence 456555667777777888888877654
No 77
>TIGR03332 salvage_mtnW 2,3-diketo-5-methylthiopentyl-1-phosphate enolase. Members of this family are the methionine salvage pathway enzyme 2,3-diketo-5-methylthiopentyl-1-phosphate enolase, a homolog of RuBisCO. This protein family seems restricted to Bacillus subtilis and close relatives, where two separate proteins carry the enolase and phosphatase activities that in other species occur in a single protein, MtnC (TIGR01691).
Probab=23.44 E-value=5e+02 Score=23.78 Aligned_cols=95 Identities=13% Similarity=0.105 Sum_probs=59.1
Q ss_pred CCHHHHHHhhHH--HHHhc-----CCHHHHHHHHHHHHHHHHhCCCeEE---EEeeCcCccccCCCCHHHHHHHHHHHHH
Q 028114 52 RSLHEVFKLFDL--IHVLT-----TDHATVTRITQEVVEDFASENIVYL---ELRTTPKRNESIGMSKRSYMDAVVEGLR 121 (213)
Q Consensus 52 ~~l~~F~~~f~~--~~~ll-----~~~~~~~~~~~~~~~~~a~dnV~Y~---Elr~~P~~~~~~~~~~~~~l~~v~~~~~ 121 (213)
.+..+.+..+.+ +..++ .+++.+ .+++.+++.-||-.+ |...++... +.++.+.++.++++
T Consensus 128 ~G~R~~lgv~~RPL~~tiiKp~~Gl~~~~~----A~~~y~~~~GGvD~IKDDE~l~dq~~~-----p~~~Rv~~~~~a~~ 198 (407)
T TIGR03332 128 DGIRKLLGVHERPLLMSIFKGMIGRDLGYL----KEQLRQQALGGVDLVKDDEILFETGLA-----PFEKRITEGKEVLQ 198 (407)
T ss_pred hHHHHHhCCCCCceeEeEeCCccCCCHHHH----HHHHHHHhccCcccccCCCCCCCCCCC-----CHHHHHHHHHHHHH
Confidence 355666666542 22222 344444 445556677777666 665555443 67899999999999
Q ss_pred hhhhhcccccccccccccccccccccccccCCCCCCcEEEEEEEEeCCCCHHHHHHHHHHHHhhC
Q 028114 122 AVSAVDVDFASRSIDVRRPVNTKNMNDACNGTRGKKIYVRLLLSIDRRETTEAAMETVKLALEMR 186 (213)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vrlI~~~~R~~~~~~~~~~~~~a~~~~ 186 (213)
++.+ +.| -+.+|.++=.-+..++.+.++.+.+.-
T Consensus 199 ~a~~-----------------------------eTG--~~~~y~~NiT~~~~em~~ra~~a~~~G 232 (407)
T TIGR03332 199 EVYE-----------------------------QTG--HKTLYAVNLTGRTFDLKDKAKRAAELG 232 (407)
T ss_pred HHHH-----------------------------HHC--CcceEeecCCCCHHHHHHHHHHHHHhC
Confidence 8865 234 234455555566677888888887753
No 78
>PRK09532 DNA polymerase III subunit alpha; Reviewed
Probab=23.27 E-value=71 Score=32.23 Aligned_cols=26 Identities=38% Similarity=0.491 Sum_probs=21.7
Q ss_pred CCceeeccc-----cCCCCCHHHHHHHHHHh
Q 028114 7 MPKVELHAH-----LNGSIRDSTLLELARVL 32 (213)
Q Consensus 7 lPK~eLH~H-----L~Gsi~~~tl~~la~~~ 32 (213)
|+=++||+| |+|+++++.+++.|++.
T Consensus 1 m~Fv~LH~HS~ySlLdg~~~~~elv~~A~~~ 31 (874)
T PRK09532 1 MSFVGLHIHSDYSLLDGASQLPALVDRAIEL 31 (874)
T ss_pred CCccccccCCcCchhhccCCHHHHHHHHHHC
Confidence 445899999 68889999999999863
No 79
>PLN02610 probable methionyl-tRNA synthetase
Probab=23.19 E-value=70 Score=31.91 Aligned_cols=27 Identities=15% Similarity=0.155 Sum_probs=22.8
Q ss_pred CHHHHHHHHHHHHHHHHhCCCeEEEEe
Q 028114 70 DHATVTRITQEVVEDFASENIVYLELR 96 (213)
Q Consensus 70 ~~~~~~~~~~~~~~~~a~dnV~Y~Elr 96 (213)
+.+...+.+++++..+.+.|..|.-..
T Consensus 111 ~~~~h~~~vq~~f~~L~~~G~Iy~~~~ 137 (801)
T PLN02610 111 STPQQTEICQAIFKKLMENNWLSENTM 137 (801)
T ss_pred CCHHHHHHHHHHHHHHHHCCCEEEeeE
Confidence 346789999999999999999998443
No 80
>cd01294 DHOase Dihydroorotase (DHOase) catalyzes the reversible interconversion of carbamoyl aspartate to dihydroorotate, a key reaction in the pyrimidine biosynthesis. In contrast to the large polyfunctional CAD proteins of higher organisms, this group of DHOases is monofunctional and mainly dimeric.
Probab=22.91 E-value=71 Score=27.84 Aligned_cols=28 Identities=18% Similarity=0.287 Sum_probs=18.4
Q ss_pred cCCc-eeeccccCCCCCHHHHHHHHHHhccCC
Q 028114 6 SMPK-VELHAHLNGSIRDSTLLELARVLGEKG 36 (213)
Q Consensus 6 ~lPK-~eLH~HL~Gsi~~~tl~~la~~~~~~g 36 (213)
.+|- +|+|+|+... +++...++.....|
T Consensus 2 ~~Pg~iD~h~h~~~~---~~~~~~~~aa~~gG 30 (335)
T cd01294 2 TIPRPDDMHLHLRDG---AMLKLVLPYTARGF 30 (335)
T ss_pred cCCCcceeEecCCCc---hHHHHHHHHHHhCC
Confidence 4788 9999999974 65554443332455
No 81
>PRK09248 putative hydrolase; Validated
Probab=22.60 E-value=1.1e+02 Score=25.37 Aligned_cols=27 Identities=26% Similarity=0.190 Sum_probs=20.2
Q ss_pred ceeeccccCCC----CCHHHHHHHHHHhccCCCC
Q 028114 9 KVELHAHLNGS----IRDSTLLELARVLGEKGVI 38 (213)
Q Consensus 9 K~eLH~HL~Gs----i~~~tl~~la~~~~~~g~~ 38 (213)
++|+|+|-.-| .+++-+++.|.+ .|+.
T Consensus 4 ~~D~H~HT~~s~~~~~~~~e~v~~A~~---~G~~ 34 (246)
T PRK09248 4 PVDTHTHTIASGHAYSTLHENAAEAKQ---KGLK 34 (246)
T ss_pred ceEeCcCCCCCCCCCCCHHHHHHHHHH---CCCC
Confidence 68999997544 578888888885 5653
No 82
>COG1099 Predicted metal-dependent hydrolases with the TIM-barrel fold [General function prediction only]
Probab=22.52 E-value=4e+02 Score=22.65 Aligned_cols=48 Identities=17% Similarity=0.192 Sum_probs=31.9
Q ss_pred CCCcEEEEEEEEe-CCCCHHHHHHHHHHHHh-hCCCCeEEEecCCCCCCCC
Q 028114 155 GKKIYVRLLLSID-RRETTEAAMETVKLALE-MRDLGVVGIDLSGNPTKGE 203 (213)
Q Consensus 155 ~~~i~vrlI~~~~-R~~~~~~~~~~~~~a~~-~~~~~vvG~dL~G~E~~~~ 203 (213)
..|+++++-+.++ |..|++ ...++....+ +.+..||+|+=-|-|..-+
T Consensus 61 ~~Gl~~~vavGvHPr~iP~e-~~~~l~~L~~~l~~e~VvAiGEiGLe~~t~ 110 (254)
T COG1099 61 KAGLKLKVAVGVHPRAIPPE-LEEVLEELEELLSNEDVVAIGEIGLEEATD 110 (254)
T ss_pred hhCceeeEEeccCCCCCCch-HHHHHHHHHhhcccCCeeEeeecccccCCH
Confidence 4688888888776 556666 4445544433 3467799999888775433
No 83
>cd08206 RuBisCO_large_I_II_III Ribulose bisphosphate carboxylase large chain, Form I,II,III. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubico-like proteins (RLP), are missing critical active site residues.
Probab=22.41 E-value=6.1e+02 Score=23.28 Aligned_cols=95 Identities=12% Similarity=0.105 Sum_probs=60.4
Q ss_pred CCHHHHHHhhHH------HHH-hcCCHHHHHHHHHHHHHHHHhCCCeEE---EEeeCcCccccCCCCHHHHHHHHHHHHH
Q 028114 52 RSLHEVFKLFDL------IHV-LTTDHATVTRITQEVVEDFASENIVYL---ELRTTPKRNESIGMSKRSYMDAVVEGLR 121 (213)
Q Consensus 52 ~~l~~F~~~f~~------~~~-ll~~~~~~~~~~~~~~~~~a~dnV~Y~---Elr~~P~~~~~~~~~~~~~l~~v~~~~~ 121 (213)
.+..+.+..+.+ +.. +=-+++.+.++ +.+++.-|+-++ |...++... +.++.+.++.++++
T Consensus 121 ~GiR~~lgv~~RPL~~tiiKP~~Glsp~~~a~~----~y~~~~GGiD~IKDDE~l~~q~~~-----p~~eRv~~~~~a~~ 191 (414)
T cd08206 121 QGEREILGKYGRPLLGTIVKPKLGLSPKEYARV----VYEALRGGLDFVKDDENQNSQPFM-----RFEDRILFVAEAMD 191 (414)
T ss_pred hhHHHHhCCCCCceEEEecccccCCCHHHHHHH----HHHHHhcCCcccccCccCCCCCCC-----cHHHHHHHHHHHHH
Confidence 355566666542 222 33456666555 455566677666 666665543 77899999999999
Q ss_pred hhhhhcccccccccccccccccccccccccCCCCCCcEEEEEEEEeCCCC-HHHHHHHHHHHHhhC
Q 028114 122 AVSAVDVDFASRSIDVRRPVNTKNMNDACNGTRGKKIYVRLLLSIDRRET-TEAAMETVKLALEMR 186 (213)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vrlI~~~~R~~~-~~~~~~~~~~a~~~~ 186 (213)
++.+ +.| -+-++..+=.-+ ++++.+..+.+.+.-
T Consensus 192 ~a~~-----------------------------eTG--~~~~y~~NiT~~~~~em~~ra~~~~~~G 226 (414)
T cd08206 192 KAEA-----------------------------ETG--EAKGHYLNITADTPEEMIKRAEFAKELG 226 (414)
T ss_pred HHHH-----------------------------hhC--CcceEEeccCCCcHHHHHHHHHHHHHhC
Confidence 8865 334 234455554555 889999988888754
No 84
>PRK00912 ribonuclease P protein component 3; Provisional
Probab=22.15 E-value=1e+02 Score=25.50 Aligned_cols=25 Identities=24% Similarity=0.191 Sum_probs=19.7
Q ss_pred CCceeecccc--CCCCCHHHHHHHHHH
Q 028114 7 MPKVELHAHL--NGSIRDSTLLELARV 31 (213)
Q Consensus 7 lPK~eLH~HL--~Gsi~~~tl~~la~~ 31 (213)
|..+|||+|- +|.-+++.+.+-|.+
T Consensus 1 ~m~~DlHvHt~~d~~~~~~e~i~~A~~ 27 (237)
T PRK00912 1 MKFYDLNVHAVPDGYDTVLRLISEASH 27 (237)
T ss_pred CCceEeccCCCCCCcchHHHHHHHHHH
Confidence 3458999997 777888888887775
No 85
>PRK00448 polC DNA polymerase III PolC; Validated
Probab=22.12 E-value=83 Score=33.60 Aligned_cols=23 Identities=35% Similarity=0.320 Sum_probs=20.7
Q ss_pred eeecccc-----CCCCCHHHHHHHHHHh
Q 028114 10 VELHAHL-----NGSIRDSTLLELARVL 32 (213)
Q Consensus 10 ~eLH~HL-----~Gsi~~~tl~~la~~~ 32 (213)
+|||+|= +|.++|+-+++.|.+.
T Consensus 335 vdLH~HT~~S~~Dg~~~~~elv~~A~~~ 362 (1437)
T PRK00448 335 VELHLHTKMSTMDAIPSVSELVKRAAKW 362 (1437)
T ss_pred EEecccccCcccccCCCHHHHHHHHHHC
Confidence 8999995 7889999999999974
No 86
>cd08210 RLP_RrRLP Ribulose bisphosphate carboxylase like proteins (RLPs) similar to R.rubrum RLP. RLP from Rhodospirillum rubrum plays a role in an uncharacterized sulfur salvage pathway and has been shown to catalyze a novel isomerization reaction that converts 5-methylthio-d-ribulose 1-phosphate to a 3:1 mixture of 1-methylthioxylulose 5-phosphate and 1-methylthioribulose 5-phosphate.
Probab=21.72 E-value=5.9e+02 Score=22.85 Aligned_cols=94 Identities=12% Similarity=0.063 Sum_probs=57.5
Q ss_pred CHHHHHHhhHH------HHHhcCCHHHHHHHHHHHHHHHHhCCCeEE---EEeeCcCccccCCCCHHHHHHHHHHHHHhh
Q 028114 53 SLHEVFKLFDL------IHVLTTDHATVTRITQEVVEDFASENIVYL---ELRTTPKRNESIGMSKRSYMDAVVEGLRAV 123 (213)
Q Consensus 53 ~l~~F~~~f~~------~~~ll~~~~~~~~~~~~~~~~~a~dnV~Y~---Elr~~P~~~~~~~~~~~~~l~~v~~~~~~~ 123 (213)
+..+.+..+.+ +..+=-+++.+.+ ++.+++.-||-.+ |...++.. .+.++.+..+.++++++
T Consensus 116 g~R~~lgv~~rPl~~tiiKP~GL~~~~~a~----~~~~~~~gGvD~IKdDe~l~~~~~-----~p~~eRv~~v~~av~~a 186 (364)
T cd08210 116 GLRALLGIPERPLLCSALKPQGLSAAELAE----LAYAFALGGIDIIKDDHGLADQPF-----APFEERVKACQEAVAEA 186 (364)
T ss_pred HHHHHhCCCCCceEEEEeccccCCHHHHHH----HHHHHHhcCCCeeecCccccCccC-----CCHHHHHHHHHHHHHHH
Confidence 45555555432 2222345555554 4555666777777 66555443 47899999999999988
Q ss_pred hhhcccccccccccccccccccccccccCCCCCCcEEEEEEEEeCCCCHHHHHHHHHHHHhhC
Q 028114 124 SAVDVDFASRSIDVRRPVNTKNMNDACNGTRGKKIYVRLLLSIDRRETTEAAMETVKLALEMR 186 (213)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vrlI~~~~R~~~~~~~~~~~~~a~~~~ 186 (213)
.+ +.|=..-++..+ .-+.+++.+.++.+.+.-
T Consensus 187 ~~-----------------------------eTG~~~~y~~Ni--ta~~~em~~ra~~a~~~G 218 (364)
T cd08210 187 NA-----------------------------ETGGRTLYAPNV--TGPPTQLLERARFAKEAG 218 (364)
T ss_pred Hh-----------------------------hcCCcceEEEec--CCCHHHHHHHHHHHHHcC
Confidence 64 334333334444 345778888888887653
No 87
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=21.49 E-value=5.9e+02 Score=22.74 Aligned_cols=85 Identities=15% Similarity=0.004 Sum_probs=52.4
Q ss_pred HHHHHhCCCeEEEEeeCcCc-c--ccCCCCHHHHHHHHHHHHHhhhhhcccccccccccccccccccccccccCCCCCCc
Q 028114 82 VEDFASENIVYLELRTTPKR-N--ESIGMSKRSYMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKNMNDACNGTRGKKI 158 (213)
Q Consensus 82 ~~~~a~dnV~Y~Elr~~P~~-~--~~~~~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 158 (213)
++.+.+-|+..+-+.++.+. + ...+.+.++.++.+.+.++.+++ .|+
T Consensus 127 ie~A~~~g~~~v~i~~s~Sd~h~~~n~~~t~~e~l~~~~~~v~~Ak~------------------------------~Gl 176 (347)
T PLN02746 127 FEAAIAAGAKEVAVFASASESFSKSNINCSIEESLVRYREVALAAKK------------------------------HSI 176 (347)
T ss_pred HHHHHHcCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHH------------------------------cCC
Confidence 33445568888777765332 2 13468999999999999988753 366
Q ss_pred EEEEEEEE-------eCCCCHHHHHHHHHHHHhhCCCCeEEEecCC
Q 028114 159 YVRLLLSI-------DRRETTEAAMETVKLALEMRDLGVVGIDLSG 197 (213)
Q Consensus 159 ~vrlI~~~-------~R~~~~~~~~~~~~~a~~~~~~~vvG~dL~G 197 (213)
.++.-++. .| .+++...+.++.+.+.--+.|.=-|.+|
T Consensus 177 ~v~~~is~~fg~p~~~r-~~~~~l~~~~~~~~~~Gad~I~l~DT~G 221 (347)
T PLN02746 177 PVRGYVSCVVGCPIEGP-VPPSKVAYVAKELYDMGCYEISLGDTIG 221 (347)
T ss_pred eEEEEEEeeecCCccCC-CCHHHHHHHHHHHHHcCCCEEEecCCcC
Confidence 66544433 23 4677777777766655333333335555
No 88
>PRK13242 ureA urease subunit gamma; Provisional
Probab=21.44 E-value=25 Score=25.62 Aligned_cols=53 Identities=17% Similarity=0.110 Sum_probs=37.0
Q ss_pred hcCCHHHHHHHHHHHHHHHHhCCCeEEEEeeCcCccccCCCCHHHHHHHHHHHHHhhh
Q 028114 67 LTTDHATVTRITQEVVEDFASENIVYLELRTTPKRNESIGMSKRSYMDAVVEGLRAVS 124 (213)
Q Consensus 67 ll~~~~~~~~~~~~~~~~~a~dnV~Y~Elr~~P~~~~~~~~~~~~~l~~v~~~~~~~~ 124 (213)
-++++|++..++.++++ .+.||-.+.|++-.- ..=++.++++..|-+-+...+
T Consensus 29 kLN~pEAvAlIs~~i~E-~aRdG~svaelm~~g----~~vL~~~dVm~GV~~mi~~vq 81 (100)
T PRK13242 29 KLNHPEAVAVLSAYVLD-GAREGKTVEEVMDGA----RSVLKADDVMDGVPDLLPLIQ 81 (100)
T ss_pred ccCcHHHHHHHHHHHHH-HhhcCCcHHHHHHHH----HhhCCHHhcccCHHHhhccee
Confidence 46889998766665554 589998888886432 223677888888877776553
No 89
>PF00465 Fe-ADH: Iron-containing alcohol dehydrogenase ; InterPro: IPR001670 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of ethanol to acetaldehyde with the concomitant reduction of NAD. Currently three, structurally and catalytically, different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Iron-containing ADH's have been found in yeast (gene ADH4) [], as well as in Zymomonas mobilis (gene adhB) []. These two iron-containing ADH's are closely related to the following enzymes: Escherichia coli propanediol oxidoreductase (1.1.1.77 from EC) (gene fucO) [], an enzyme involved in the metabolism of fucose and which also seems to contain ferrous ion(s). Clostridium acetobutylicum NADPH- and NADH-dependent butanol dehydrogenases (1.1.1 from EC) (genes adh1, bdhA and bdhB) [], an enzyme which has activity using butanol and ethanol as substrates. E. coli adhE [], an iron-dependent enzyme which harbor three different activities: alcohol dehydrogenase, acetaldehyde dehydrogenase (acetylating) (1.2.1.10 from EC) and pyruvate-formate-lyase deactivase. Bacterial glycerol dehydrogenase (1.1.1.6 from EC) (gene gldA or dhaD) []. Clostridium kluyveri NAD-dependent 4-hydroxybutyrate dehydrogenase (4hbd) (1.1.1.61 from EC). Citrobacter freundii and Klebsiella pneumoniae 1,3-propanediol dehydrogenase (1.1.1.202 from EC) (gene dhaT). Bacillus methanolicus NAD-dependent methanol dehydrogenase (1.1.1.244 from EC) []. E. coli and Salmonella typhimurium ethanolamine utilization protein eutG. E. coli hypothetical protein yiaY. ; GO: 0016491 oxidoreductase activity, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 1RRM_A 2BL4_A 2BI4_A 3BFJ_R 1KQ3_A 1JQ5_A 1JPU_A 1JQA_A 3JZD_A 3UHJ_A ....
Probab=21.43 E-value=4.3e+02 Score=23.21 Aligned_cols=38 Identities=18% Similarity=0.172 Sum_probs=30.0
Q ss_pred CcEEEEEEEEeCCCCHHHHHHHHHHHHhhCCCCeEEEe
Q 028114 157 KIYVRLLLSIDRRETTEAAMETVKLALEMRDLGVVGID 194 (213)
Q Consensus 157 ~i~vrlI~~~~R~~~~~~~~~~~~~a~~~~~~~vvG~d 194 (213)
++.+.+.-.+..+.+.+.+.+.++.+.+.+.+.|+||+
T Consensus 49 ~i~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIaiG 86 (366)
T PF00465_consen 49 GIEVQVFDGVGPNPTLEDVDEAAEQARKFGADCIIAIG 86 (366)
T ss_dssp TCEEEEEEEESSS-BHHHHHHHHHHHHHTTSSEEEEEE
T ss_pred ceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCEEEEcC
Confidence 66676666677788888899999999888888899985
No 90
>TIGR01405 polC_Gram_pos DNA polymerase III, alpha chain, Gram-positive type. The N-terminal region of about 200 amino acids is rich in low-complexity sequence, poorly alignable, and not included n this model.
Probab=21.38 E-value=89 Score=32.77 Aligned_cols=24 Identities=25% Similarity=0.328 Sum_probs=20.8
Q ss_pred ceeecccc-----CCCCCHHHHHHHHHHh
Q 028114 9 KVELHAHL-----NGSIRDSTLLELARVL 32 (213)
Q Consensus 9 K~eLH~HL-----~Gsi~~~tl~~la~~~ 32 (213)
++|||+|- +|..+|+.+++.|.+.
T Consensus 104 rvDLH~HT~~S~~Dg~~~~~elv~~A~~~ 132 (1213)
T TIGR01405 104 RVELHFHTKMSQMDAITSVQEYVKQAKKW 132 (1213)
T ss_pred eEEeeeCccCcccccCCCHHHHHHHHHHC
Confidence 49999996 7889999999999963
No 91
>PRK13241 ureA urease subunit gamma; Provisional
Probab=21.26 E-value=27 Score=25.49 Aligned_cols=53 Identities=17% Similarity=0.173 Sum_probs=37.0
Q ss_pred hcCCHHHHHHHHHHHHHHHHhCCCeEEEEeeCcCccccCCCCHHHHHHHHHHHHHhhh
Q 028114 67 LTTDHATVTRITQEVVEDFASENIVYLELRTTPKRNESIGMSKRSYMDAVVEGLRAVS 124 (213)
Q Consensus 67 ll~~~~~~~~~~~~~~~~~a~dnV~Y~Elr~~P~~~~~~~~~~~~~l~~v~~~~~~~~ 124 (213)
-++++|++..++.+++ +.+.||-.+.|++-.-. .=++.++++..|-+-+...+
T Consensus 29 kLN~pEAvAlI~~~v~-E~aRdG~svaelm~~g~----~~L~~ddVm~GV~emi~~vq 81 (100)
T PRK13241 29 KLNYPEAVALISDALL-EGARDGKTVAELMSYGR----TVLTRDDVMEGVPEMIPDVQ 81 (100)
T ss_pred ccCcHHHHHHHHHHHH-HHhhCCCCHHHHHHHhh----hhCCHHhcccCHHHhhccee
Confidence 3688888866665555 55899988888865322 23677888888887776553
No 92
>PRK08203 hydroxydechloroatrazine ethylaminohydrolase; Reviewed
Probab=21.24 E-value=1.8e+02 Score=26.36 Aligned_cols=15 Identities=27% Similarity=0.530 Sum_probs=12.4
Q ss_pred CCc-eeeccccCCCCC
Q 028114 7 MPK-VELHAHLNGSIR 21 (213)
Q Consensus 7 lPK-~eLH~HL~Gsi~ 21 (213)
||- ++.|+|+..++.
T Consensus 58 ~PGlVn~H~H~~~~~~ 73 (451)
T PRK08203 58 TPGLVNTHHHFYQTLT 73 (451)
T ss_pred ecceEeccccccchhc
Confidence 787 999999988744
No 93
>COG0587 DnaE DNA polymerase III, alpha subunit [DNA replication, recombination, and repair]
Probab=21.21 E-value=91 Score=32.46 Aligned_cols=24 Identities=38% Similarity=0.553 Sum_probs=21.8
Q ss_pred ceeeccc-----cCCCCCHHHHHHHHHHh
Q 028114 9 KVELHAH-----LNGSIRDSTLLELARVL 32 (213)
Q Consensus 9 K~eLH~H-----L~Gsi~~~tl~~la~~~ 32 (213)
=++|||| |+|+.+++-|++.|.+.
T Consensus 4 fv~Lh~hS~YS~Ldga~~i~~Lv~~A~~~ 32 (1139)
T COG0587 4 FVHLHVHSEYSLLDGASKIEELVKKAKEL 32 (1139)
T ss_pred eeecccccccchhccccCHHHHHHHHHHc
Confidence 3899999 89999999999999974
No 94
>cd08213 RuBisCO_large_III Ribulose bisphosphate carboxylase large chain, Form III. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV , which differ in their taxonomic distribution and subunit composition. Form III is only found in archaea and forms large subunit oligomers (dimers or decamers) that do not include small subunits.
Probab=21.01 E-value=6.5e+02 Score=23.08 Aligned_cols=94 Identities=7% Similarity=-0.016 Sum_probs=58.7
Q ss_pred CHHHHHHhhHH------HHH-hcCCHHHHHHHHHHHHHHHHhCCCeEE---EEeeCcCccccCCCCHHHHHHHHHHHHHh
Q 028114 53 SLHEVFKLFDL------IHV-LTTDHATVTRITQEVVEDFASENIVYL---ELRTTPKRNESIGMSKRSYMDAVVEGLRA 122 (213)
Q Consensus 53 ~l~~F~~~f~~------~~~-ll~~~~~~~~~~~~~~~~~a~dnV~Y~---Elr~~P~~~~~~~~~~~~~l~~v~~~~~~ 122 (213)
+..+-+..+.+ +.. +=-+++.+.+ ++.+++.-||-++ |...++.. .+.++.+.++.+++++
T Consensus 121 G~R~~lgv~~RPL~gtiiKP~~Glsp~~~a~----~~y~~~~GGvD~iKDDE~l~~q~~-----~p~~~Rv~~~~~a~~~ 191 (412)
T cd08213 121 GVREILGIKDRPLLGTVPKPKVGLSPEEHAE----VAYEALVGGVDLVKDDENLTSQPF-----NRFEERAKESLKARDK 191 (412)
T ss_pred hHHHHhCCCCCCeEEeecCcccCCCHHHHHH----HHHHHHhcCCcccccCccCCCCCC-----CCHHHHHHHHHHHHHH
Confidence 55555555542 222 3345555554 4556667777766 66555544 3778999999999998
Q ss_pred hhhhcccccccccccccccccccccccccCCCCCCcEEEEEEEEeCCCCHHHHHHHHHHHHhhC
Q 028114 123 VSAVDVDFASRSIDVRRPVNTKNMNDACNGTRGKKIYVRLLLSIDRRETTEAAMETVKLALEMR 186 (213)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vrlI~~~~R~~~~~~~~~~~~~a~~~~ 186 (213)
+.+ ++|-.. ++.++=.-+++++.+..+.+.+.-
T Consensus 192 a~~-----------------------------eTG~~~--~y~~NiT~~~~em~~ra~~a~e~G 224 (412)
T cd08213 192 AEA-----------------------------ETGERK--AYLANITAPVREMERRAELVADLG 224 (412)
T ss_pred HHH-----------------------------hhCCcc--eEEEEecCCHHHHHHHHHHHHHhC
Confidence 865 334333 344444455889999999888753
No 95
>PRK06920 dnaE DNA polymerase III DnaE; Reviewed
Probab=20.97 E-value=95 Score=32.23 Aligned_cols=26 Identities=27% Similarity=0.316 Sum_probs=22.6
Q ss_pred CCceeeccc-----cCCCCCHHHHHHHHHHh
Q 028114 7 MPKVELHAH-----LNGSIRDSTLLELARVL 32 (213)
Q Consensus 7 lPK~eLH~H-----L~Gsi~~~tl~~la~~~ 32 (213)
|+=++||+| |+|.++++.|++.|++.
T Consensus 1 m~fvhLhvhS~ySlLdg~~~i~~lv~~A~~~ 31 (1107)
T PRK06920 1 MKFVHLQCQTVFSLLKSACKIDELVVRAKEL 31 (1107)
T ss_pred CCceeeecCcccchhccCCCHHHHHHHHHHC
Confidence 345899999 89999999999999974
No 96
>cd00390 Urease_gamma Urease gamma-subunit; Urease is a nickel-dependent metalloenzyme that catalyzes the hydrolysis of urea to form ammonia and carbon dioxide. Nickel-dependent ureases are found in bacteria, archaea, fungi and plants. Their primary role is to allow the use of external and internally-generated urea as a nitrogen source. The enzyme consists of three subunits, alpha, beta and gamma, which can exist as separate proteins or can be fused on a single protein chain. The alpha-beta-gamma heterotrimer forms multimers, mainly trimers. The large alpha subunit is the catalytic domain containing an active site with a bi-nickel center complexed by a carbamylated lysine. The beta and gamma subunits play a role in subunit association to form the higher order trimers.
Probab=20.68 E-value=27 Score=25.30 Aligned_cols=52 Identities=23% Similarity=0.218 Sum_probs=36.2
Q ss_pred hcCCHHHHHHHHHHHHHHHHhCCCeEEEEeeCcCccccCCCCHHHHHHHHHHHHHhh
Q 028114 67 LTTDHATVTRITQEVVEDFASENIVYLELRTTPKRNESIGMSKRSYMDAVVEGLRAV 123 (213)
Q Consensus 67 ll~~~~~~~~~~~~~~~~~a~dnV~Y~Elr~~P~~~~~~~~~~~~~l~~v~~~~~~~ 123 (213)
-++++|++..++.+++ +.+.||-.+.|++-.-. .=++.++++..|-+-+...
T Consensus 26 kLN~pEAvAlIs~~v~-E~aRdG~svaelm~~g~----~~L~~d~Vm~GV~emi~~v 77 (96)
T cd00390 26 KLNYPEAVALIADEIL-EGARDGKSVAELMSLGK----TVLTRDDVMEGVPEMLHDV 77 (96)
T ss_pred ccCcHHHHHHHHHHHH-HHhhcCCCHHHHHHHHh----hhCCHHhcccCHHHhhcce
Confidence 4688888766655554 55889988888865322 2367788888887777654
No 97
>cd00854 NagA N-acetylglucosamine-6-phosphate deacetylase, NagA, catalyzes the hydrolysis of the N-acetyl group of N-acetyl-glucosamine-6-phosphate (GlcNAc-6-P) to glucosamine 6-phosphate and acetate. This is the first committed step in the biosynthetic pathway to amino-sugar-nucleotides, which is needed for cell wall peptidoglycan and teichoic acid biosynthesis. Deacetylation of N-acetylglucosamine is also important in lipopolysaccharide synthesis and cell wall recycling.
Probab=20.59 E-value=1.1e+02 Score=27.26 Aligned_cols=33 Identities=24% Similarity=0.487 Sum_probs=22.3
Q ss_pred cCCc-eeeccccCCCC-----CHHHHHHHHHHhccCCCC
Q 028114 6 SMPK-VELHAHLNGSI-----RDSTLLELARVLGEKGVI 38 (213)
Q Consensus 6 ~lPK-~eLH~HL~Gsi-----~~~tl~~la~~~~~~g~~ 38 (213)
-+|- +|+|+|..+.. +++++..+++....+|+.
T Consensus 49 l~PG~iD~H~H~~~g~~~~~~~~e~~~~~~~~~~~~GvT 87 (374)
T cd00854 49 LVPGFIDIHIHGGGGADFMDGTAEALKTIAEALAKHGTT 87 (374)
T ss_pred ecccEEEeeecccCCCCCCCCCHHHHHHHHHHHHccCcc
Confidence 3787 99999985422 367776666654457774
No 98
>PRK09549 mtnW 2,3-diketo-5-methylthiopentyl-1-phosphate enolase; Reviewed
Probab=20.46 E-value=6.7e+02 Score=22.99 Aligned_cols=94 Identities=17% Similarity=0.112 Sum_probs=58.8
Q ss_pred CHHHHHHhhHH--HH-----HhcCCHHHHHHHHHHHHHHHHhCCCeEE---EEeeCcCccccCCCCHHHHHHHHHHHHHh
Q 028114 53 SLHEVFKLFDL--IH-----VLTTDHATVTRITQEVVEDFASENIVYL---ELRTTPKRNESIGMSKRSYMDAVVEGLRA 122 (213)
Q Consensus 53 ~l~~F~~~f~~--~~-----~ll~~~~~~~~~~~~~~~~~a~dnV~Y~---Elr~~P~~~~~~~~~~~~~l~~v~~~~~~ 122 (213)
+..+.+..+.+ +. .+=-+++.+.++ +.+++.-|+-++ |...++.. .+.++.+.++.+.+++
T Consensus 124 G~R~~lgv~~RPL~~tiiKP~~GLsp~~~a~~----~y~~~~GGvD~IKDDE~l~~q~~-----~p~~eRv~~~~~a~~~ 194 (407)
T PRK09549 124 GIRNLLGVHDRPLLMSIFKGVIGRDLDYLKEQ----LRDQALGGVDLVKDDEILFENAL-----TPFEKRIVAGKEVLQE 194 (407)
T ss_pred hHHHHhCCCCCceEEEeecCccCCCHHHHHHH----HHHHHhcCCcceecCcCCCCCCC-----cCHHHHHHHHHHHHHH
Confidence 55555555542 22 233456666555 445666777766 56555443 3778999999999998
Q ss_pred hhhhcccccccccccccccccccccccccCCCCCCcEEEEEEEEeCCCCHHHHHHHHHHHHhhC
Q 028114 123 VSAVDVDFASRSIDVRRPVNTKNMNDACNGTRGKKIYVRLLLSIDRRETTEAAMETVKLALEMR 186 (213)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vrlI~~~~R~~~~~~~~~~~~~a~~~~ 186 (213)
+.+ ++|- +-+|.++=.-+.+++.+..+.+.+.-
T Consensus 195 a~~-----------------------------eTG~--~~~y~~NiT~~~~em~~ra~~a~~~G 227 (407)
T PRK09549 195 VYE-----------------------------TTGH--KTLYAVNLTGRTFELKEKAKRAAEAG 227 (407)
T ss_pred HHH-----------------------------hhCC--cceEEEecCCCHHHHHHHHHHHHHcC
Confidence 865 3342 34455555556778888888887653
No 99
>PRK09357 pyrC dihydroorotase; Validated
Probab=20.42 E-value=65 Score=28.93 Aligned_cols=33 Identities=27% Similarity=0.371 Sum_probs=19.7
Q ss_pred cCCc-eeeccccCC--CCCHHHHHHHHHHhccCCCC
Q 028114 6 SMPK-VELHAHLNG--SIRDSTLLELARVLGEKGVI 38 (213)
Q Consensus 6 ~lPK-~eLH~HL~G--si~~~tl~~la~~~~~~g~~ 38 (213)
-||- +|+|+|+.| ...++.+...++.....|+.
T Consensus 51 v~PG~ID~H~H~~~~~~~~~e~~~~~~~~a~~~GvT 86 (423)
T PRK09357 51 VAPGLVDLHVHLREPGQEDKETIETGSRAAAAGGFT 86 (423)
T ss_pred EeCCEEecccccCCCCccccccHHHHHHHHHhCCCe
Confidence 3788 999999965 44556655322221135653
Done!