Query 028114
Match_columns 213
No_of_seqs 129 out of 1216
Neff 7.6
Searched_HMMs 29240
Date Mon Mar 25 10:15:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028114.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028114hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gxw_A Adenosine deaminase; am 100.0 2.8E-40 9.6E-45 293.6 16.5 177 2-212 24-204 (380)
2 3pao_A Adenosine deaminase; st 100.0 2.2E-40 7.7E-45 289.1 14.1 178 2-212 5-184 (326)
3 3rys_A Adenosine deaminase 1; 100.0 5.7E-40 2E-44 288.2 16.6 177 3-212 9-187 (343)
4 3iar_A Adenosine deaminase; pu 100.0 2.6E-38 8.8E-43 279.8 16.9 175 5-212 4-199 (367)
5 2pgf_A Adenosine deaminase; me 100.0 4.1E-31 1.4E-35 234.2 15.5 177 2-211 39-221 (371)
6 3lgd_A Adenosine deaminase CEC 100.0 1.7E-28 5.7E-33 224.4 15.1 184 2-212 74-316 (508)
7 2a3l_A AMP deaminase, AMPD; at 99.8 4.5E-22 1.5E-26 187.4 2.6 163 2-202 243-468 (701)
8 3h4u_A Amidohydrolase; signatu 86.0 7.8 0.00027 33.6 11.3 68 7-97 86-154 (479)
9 4dyk_A Amidohydrolase; adenosi 86.0 5.2 0.00018 34.4 10.1 64 7-94 65-130 (451)
10 2yxo_A Histidinol phosphatase; 77.8 1.8 6E-05 34.9 3.6 27 9-38 1-31 (267)
11 3ls9_A Triazine hydrolase; atr 77.1 31 0.0011 29.3 11.7 68 7-96 56-129 (456)
12 2yb1_A Amidohydrolase; HET: AM 76.8 2 6.7E-05 35.8 3.7 29 7-38 1-32 (292)
13 4f0r_A 5-methylthioadenosine/S 70.8 31 0.001 29.4 10.1 66 7-96 63-130 (447)
14 2wje_A CPS4B, tyrosine-protein 65.8 3.7 0.00013 33.0 2.8 29 10-38 6-39 (247)
15 2anu_A Hypothetical protein TM 65.7 4.6 0.00016 32.6 3.4 28 9-39 21-51 (255)
16 4dzh_A Amidohydrolase; adenosi 65.1 52 0.0018 28.4 10.5 65 7-95 72-138 (472)
17 1m65_A Hypothetical protein YC 63.8 4.8 0.00016 31.9 3.2 28 8-38 2-33 (245)
18 3o0f_A Putative metal-dependen 56.5 8.6 0.00029 32.4 3.5 27 9-38 14-43 (301)
19 3qy7_A Tyrosine-protein phosph 54.6 8.2 0.00028 31.6 3.1 26 10-38 2-35 (262)
20 3f2b_A DNA-directed DNA polyme 52.7 9.7 0.00033 37.5 3.7 26 7-32 114-144 (1041)
21 2hnh_A DNA polymerase III alph 52.6 10 0.00034 36.9 3.7 25 8-32 5-34 (910)
22 3nzt_A Glutamate--cysteine lig 47.7 18 0.00063 32.8 4.4 39 81-119 320-361 (525)
23 1zzm_A Putative deoxyribonucle 47.2 14 0.00047 29.3 3.3 28 7-37 3-33 (259)
24 3lnp_A Amidohydrolase family p 46.5 15 0.00052 31.6 3.7 29 68-96 124-152 (468)
25 3e38_A Two-domain protein cont 45.0 16 0.00053 31.3 3.4 27 9-38 20-49 (343)
26 2w9m_A Polymerase X; SAXS, DNA 38.8 22 0.00074 32.5 3.5 27 9-38 328-357 (578)
27 2hpi_A DNA polymerase III alph 38.8 18 0.00063 36.2 3.2 26 6-31 4-34 (1220)
28 3b0x_A DNA polymerase beta fam 36.7 24 0.00083 32.1 3.5 27 9-38 338-367 (575)
29 1vk8_A Hypothetical protein TM 35.9 71 0.0024 22.4 5.2 49 71-123 28-76 (106)
30 3v7p_A Amidohydrolase family p 35.1 1.7E+02 0.0059 24.7 8.7 23 71-93 94-116 (427)
31 1yix_A Deoxyribonuclease YCFH; 31.5 28 0.00096 27.4 2.7 28 7-37 1-34 (265)
32 1xwy_A DNAse TATD, deoxyribonu 30.2 31 0.0011 27.2 2.8 29 7-38 3-34 (264)
33 2ztj_A Homocitrate synthase; ( 29.7 2.6E+02 0.0089 23.8 8.9 86 82-198 80-169 (382)
34 2y1h_A Putative deoxyribonucle 26.0 44 0.0015 26.5 3.0 29 6-37 3-34 (272)
35 3gg7_A Uncharacterized metallo 26.0 43 0.0015 27.1 2.9 29 7-38 1-29 (254)
36 3d24_B Peroxisome proliferator 24.9 8.4 0.00029 20.2 -1.0 15 7-21 8-22 (26)
37 2cw6_A Hydroxymethylglutaryl-C 24.0 2.9E+02 0.0099 22.4 9.0 86 82-198 86-181 (298)
38 3mkv_A Putative amidohydrolase 22.0 22 0.00074 28.4 0.4 14 7-20 58-72 (426)
39 3mtw_A L-arginine carboxypepti 21.8 22 0.00075 28.3 0.4 14 7-20 57-71 (403)
40 2f6k_A Metal-dependent hydrola 21.7 46 0.0016 26.7 2.3 12 7-18 1-12 (307)
41 1yqh_A DUF77, IG hypothetical 21.4 2.1E+02 0.0073 19.9 5.6 48 72-123 21-68 (109)
42 2vhl_A N-acetylglucosamine-6-p 21.4 35 0.0012 28.5 1.6 32 7-38 56-93 (396)
43 1va6_A Glutamate--cysteine lig 21.3 71 0.0024 28.9 3.7 39 81-119 315-356 (518)
44 2ffi_A 2-pyrone-4,6-dicarboxyl 21.2 78 0.0027 25.1 3.6 29 7-38 12-55 (288)
45 2ibo_A Hypothetical protein SP 20.1 2.2E+02 0.0077 19.6 8.0 49 71-123 15-63 (104)
No 1
>4gxw_A Adenosine deaminase; amidohydrolase, COG1816, EFI, structural genomics, hydrolase; 1.30A {Burkholderia ambifaria}
Probab=100.00 E-value=2.8e-40 Score=293.62 Aligned_cols=177 Identities=27% Similarity=0.355 Sum_probs=159.1
Q ss_pred hhhhcCCceeeccccCCCCCHHHHHHHHHHhccCCCCC-chhhhHHHh--cCCCCHHHHHHhhHHHHHhcCCHHHHHHHH
Q 028114 2 EWFASMPKVELHAHLNGSIRDSTLLELARVLGEKGVIV-FSDVEHVIM--KSDRSLHEVFKLFDLIHVLTTDHATVTRIT 78 (213)
Q Consensus 2 ~~l~~lPK~eLH~HL~Gsi~~~tl~~la~~~~~~g~~~-~~~~~~~~~--~~~~~l~~F~~~f~~~~~ll~~~~~~~~~~ 78 (213)
+||++|||+|||+||+||++|+|+++||++ +|+++ ..+++.++. ....++.+|+..|.. .++++++++++++
T Consensus 24 ~Fi~~LPKvELH~HLdGsl~p~tl~~LA~~---~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~vl~t~ed~~r~a 98 (380)
T 4gxw_A 24 AFFHALPKVELHCHLLGAVRHDTFVALAQR---SGAPIERAEIDAFYARGEKPVGVLHVLRALDR--YLLTRPDDLRRIA 98 (380)
T ss_dssp HHHHHSCEEECCBBGGGCCCHHHHHHHHHH---HTCSCCTTHHHHHHCCCSSCCCSHHHHHHHHH--HTCCSHHHHHHHH
T ss_pred HHHHhChhHHhhcCCcCCCCHHHHHHHHHH---hCCCCCcccHHHHHHhhhccccHHHHHHHHHH--HHcCCHHHHHHHH
Confidence 599999999999999999999999999996 68876 346666654 245678888888874 4899999999999
Q ss_pred HHHHHHHHhCCCeEEEEeeCcCccc-cCCCCHHHHHHHHHHHHHhhhhhcccccccccccccccccccccccccCCCCCC
Q 028114 79 QEVVEDFASENIVYLELRTTPKRNE-SIGMSKRSYMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKNMNDACNGTRGKK 157 (213)
Q Consensus 79 ~~~~~~~a~dnV~Y~Elr~~P~~~~-~~~~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (213)
+++++++++|||+|+|+|++|..+. ..|++.+++++++.+|++++.+ ++|
T Consensus 99 ~e~~ed~a~dgV~Y~Eirf~P~~~~~~~Gl~~~~vv~av~~g~~~a~~-----------------------------~~g 149 (380)
T 4gxw_A 99 YEYLEDAAAHNVRHAEFFWNPTGTVRVSGIPYADAQAAIVTGMRDAAR-----------------------------DFG 149 (380)
T ss_dssp HHHHHHHHTTTEEEEEEEECHHHHHHTTCCCHHHHHHHHHHHHHHHHH-----------------------------HHC
T ss_pred HHHHHHHHHCCCeEEEEEcCHHHhccccCCCHHHHHHHHHHHHHHHHH-----------------------------hcC
Confidence 9999999999999999999998875 4799999999999999998864 579
Q ss_pred cEEEEEEEEeCCCCHHHHHHHHHHHHhhCCCCeEEEecCCCCCCCCccchhhccC
Q 028114 158 IYVRLLLSIDRRETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWYSFVTDHS 212 (213)
Q Consensus 158 i~vrlI~~~~R~~~~~~~~~~~~~a~~~~~~~vvG~dL~G~E~~~~~~~f~~~~~ 212 (213)
|++|+|+|++|+.+++++.++++++.++++++||||||+|+|.++|+..|.++|.
T Consensus 150 i~~rlI~~~~R~~~~e~a~~~~~~a~~~~~~~VvG~dL~g~E~~~p~~~f~~~f~ 204 (380)
T 4gxw_A 150 IGARLIPSIDREQDPDEAVAIVDWMKANRADEVAGIGIDYRENDRPPELFWKAYR 204 (380)
T ss_dssp CEEEEEEEEETTSCHHHHHHHHHHHHHTCCTTBCEEEEESCCTTCCGGGGHHHHH
T ss_pred CcEEEEEeecCCCCHHHHHHHHHHHHHhCCCCEEEEeecCCCCCCCHHHHHHHHH
Confidence 9999999999999999999999999999998999999999999999999999874
No 2
>3pao_A Adenosine deaminase; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; HET: ADE; 2.49A {Pseudomonas aeruginosa} PDB: 3pan_A* 3ou8_A* 3pbm_A*
Probab=100.00 E-value=2.2e-40 Score=289.07 Aligned_cols=178 Identities=23% Similarity=0.307 Sum_probs=162.3
Q ss_pred hhhhcCCceeeccccCCCCCHHHHHHHHHHhccCCCCCc-hhhhHHHh-cCCCCHHHHHHhhHHHHHhcCCHHHHHHHHH
Q 028114 2 EWFASMPKVELHAHLNGSIRDSTLLELARVLGEKGVIVF-SDVEHVIM-KSDRSLHEVFKLFDLIHVLTTDHATVTRITQ 79 (213)
Q Consensus 2 ~~l~~lPK~eLH~HL~Gsi~~~tl~~la~~~~~~g~~~~-~~~~~~~~-~~~~~l~~F~~~f~~~~~ll~~~~~~~~~~~ 79 (213)
+|+++|||+|||+||+||++|+|+++||++ +|+.++ ++++++.. ..+.+|.+|++.|..+..+++++++++++++
T Consensus 5 ~~~~~lPK~ELH~Hl~Gsl~~~t~~~la~~---~~~~lp~~~~~~l~~~~~~~~l~~fl~~~~~~~~vl~t~ed~~~~a~ 81 (326)
T 3pao_A 5 EWLNALPKAELHLHLEGTLEPELLFALAER---NRIALPWNDVETLRKAYAFNNLQEFLDLYYAGADVLRTEQDFYDLTW 81 (326)
T ss_dssp HHHHHSCEEECSBBGGGGCCHHHHHHHHHH---TTCCCSSSSHHHHHHTCCCSSHHHHHHHHHHHGGGCCSHHHHHHHHH
T ss_pred HHHHhCCceEEEecccCCCCHHHHHHHHHh---cCCCCCCCCHHHHHhhcCCCCHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 589999999999999999999999999996 788764 45666543 3578999999999999999999999999999
Q ss_pred HHHHHHHhCCCeEEEEeeCcCccccCCCCHHHHHHHHHHHHHhhhhhcccccccccccccccccccccccccCCCCCCcE
Q 028114 80 EVVEDFASENIVYLELRTTPKRNESIGMSKRSYMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKNMNDACNGTRGKKIY 159 (213)
Q Consensus 80 ~~~~~~a~dnV~Y~Elr~~P~~~~~~~~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 159 (213)
++++++++|||+|+|+|++|..+...|++.+++++++.++++++++ ++||+
T Consensus 82 ~~~~~~~~dgV~y~Eir~~P~~~~~~gl~~~~~v~~v~~~~~~a~~-----------------------------~~gi~ 132 (326)
T 3pao_A 82 AYLQKCKAQNVVHVEPFFDPQTHTDRGIPFEVVLAGIRAALRDGEK-----------------------------LLGIR 132 (326)
T ss_dssp HHHHHHHHTTEEEECCEECHHHHHTTTCCHHHHHHHHHHHHHHHHH-----------------------------HHCCE
T ss_pred HHHHHHHHcCCeEEEEEEChHHhccCCCCHHHHHHHHHHHHHHHHh-----------------------------hCceE
Confidence 9999999999999999999999888899999999999999999865 56999
Q ss_pred EEEEEEEeCCCCHHHHHHHHHHHHhhCCCCeEEEecCCCCCCCCccchhhccC
Q 028114 160 VRLLLSIDRRETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWYSFVTDHS 212 (213)
Q Consensus 160 vrlI~~~~R~~~~~~~~~~~~~a~~~~~~~vvG~dL~G~E~~~~~~~f~~~~~ 212 (213)
+|+|+|++|+.+++.+.+.++++.++++ +||||||+|+|.++++.+|.++|.
T Consensus 133 ~~lI~~~~R~~~~~~a~~~~~~a~~~~~-~vvG~dL~g~E~~~~~~~~~~~~~ 184 (326)
T 3pao_A 133 HGLILSFLRHLSEEQAQKTLDQALPFRD-AFIAVGLDSSEVGHPPSKFQRVFD 184 (326)
T ss_dssp ECCEEEEETTSCHHHHHHHHHHHGGGGG-GCSEEEEESCCTTCCGGGGHHHHH
T ss_pred EEEEEEeCCCCCHHHHHHHHHHHhhccc-cceeeCCCCCCCCCCHHHHHHHHH
Confidence 9999999999999999999999999865 899999999998888899988764
No 3
>3rys_A Adenosine deaminase 1; SGX, hydrolase; HET: ADE; 2.60A {Arthrobacter aurescens} SCOP: c.1.9.0
Probab=100.00 E-value=5.7e-40 Score=288.24 Aligned_cols=177 Identities=19% Similarity=0.256 Sum_probs=160.6
Q ss_pred hhhcCCceeeccccCCCCCHHHHHHHHHHhccCCCCCc-hhhhHHHh-cCCCCHHHHHHhhHHHHHhcCCHHHHHHHHHH
Q 028114 3 WFASMPKVELHAHLNGSIRDSTLLELARVLGEKGVIVF-SDVEHVIM-KSDRSLHEVFKLFDLIHVLTTDHATVTRITQE 80 (213)
Q Consensus 3 ~l~~lPK~eLH~HL~Gsi~~~tl~~la~~~~~~g~~~~-~~~~~~~~-~~~~~l~~F~~~f~~~~~ll~~~~~~~~~~~~ 80 (213)
++++|||+|||+||+||++|+|+++||++ +|+.++ .+++++.. ..+.+|.+|++.|..+.+++++++++++++++
T Consensus 9 ~~~~lPK~ELH~Hl~Gsl~p~tl~~la~~---~~~~lp~~~~~~l~~~~~~~~l~~fl~~f~~~~~vl~~~e~~~~~~~~ 85 (343)
T 3rys_A 9 TSTAPPVAELHLHIEGTLQPELIFALAER---NGIELPYEDIEELREKYEFTDLQSFLDLYYANMAVLQTEQDFTDMTRA 85 (343)
T ss_dssp CCSCCCEEECSBBGGGGCCHHHHHHHHHH---TTCCCSCSSHHHHHTTCCCSSHHHHHHHHHHHGGGCCSHHHHHHHHHH
T ss_pred hhhcCCceeeEecCccCCCHHHHHHHHHh---cCCCCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 47999999999999999999999999996 788764 45565543 25789999999999999999999999999999
Q ss_pred HHHHHHhCCCeEEEEeeCcCccccCCCCHHHHHHHHHHHHHhhhhhcccccccccccccccccccccccccCCCCCCcEE
Q 028114 81 VVEDFASENIVYLELRTTPKRNESIGMSKRSYMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKNMNDACNGTRGKKIYV 160 (213)
Q Consensus 81 ~~~~~a~dnV~Y~Elr~~P~~~~~~~~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v 160 (213)
+++++++|||+|+|+|++|+.+...|++.+++++++.++++++++ ++||++
T Consensus 86 ~l~~~~~dgV~y~Eir~~P~~~~~~gl~~~~~v~~v~~~~~~a~~-----------------------------~~gi~~ 136 (343)
T 3rys_A 86 YLERAAAGGVRHAEIMMDPQAHTSRGVALETCVNGVANALATSEE-----------------------------DFGVST 136 (343)
T ss_dssp HHHHHHHTTEEEEEEEECHHHHHTTTCCHHHHHHHHHHHHTTHHH-----------------------------HHSCEE
T ss_pred HHHHHHHCCCEEEEEEecHHHhccCCCCHHHHHHHHHHHHHHHhh-----------------------------cCceeE
Confidence 999999999999999999998888899999999999999998864 579999
Q ss_pred EEEEEEeCCCCHHHHHHHHHHHHhhCCCCeEEEecCCCCCCCCccchhhccC
Q 028114 161 RLLLSIDRRETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWYSFVTDHS 212 (213)
Q Consensus 161 rlI~~~~R~~~~~~~~~~~~~a~~~~~~~vvG~dL~G~E~~~~~~~f~~~~~ 212 (213)
|+|+|++|+.+++.+.++++++.++ +++||||||+|+|.++++..|.++|.
T Consensus 137 ~lI~~~~R~~~~~~a~~~l~~a~~~-~~~vvG~dL~g~E~~~~~~~~~~~~~ 187 (343)
T 3rys_A 137 LLIAAFLRDMSEDSALEVLDQLLAM-HAPIAGIGLDSAEVGNPPSKFERLYQ 187 (343)
T ss_dssp EEEEEEETTSCHHHHHHHHHHHHHT-TCCCCEEEEESCCTTCCGGGGHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHhC-CCCEEEEecCCcccCCCHHHHHHHHH
Confidence 9999999999999999999999997 56899999999999888898988764
No 4
>3iar_A Adenosine deaminase; purine metabolism structural genomics, structural genomics consortium, SGC, D mutation, hereditary hemolytic anemia, hydrolase; HET: 3D1; 1.52A {Homo sapiens} SCOP: c.1.9.1 PDB: 2bgn_E* 1w1i_E* 1qxl_A* 1krm_A* 1vfl_A 1ndv_A* 1ndy_A* 1ndz_A* 1o5r_A* 1uml_A* 1v79_A* 1v7a_A* 1ndw_A 1wxy_A* 1wxz_A* 2e1w_A* 2z7g_A* 2ada_A* 3mvi_A 1a4l_A* ...
Probab=100.00 E-value=2.6e-38 Score=279.84 Aligned_cols=175 Identities=27% Similarity=0.353 Sum_probs=152.3
Q ss_pred hcCCceeeccccCCCCCHHHHHHHHHHhccCCCCCc-hhhhHH---Hh-cCCCCHHHHHHhhHHHHHhcC-CHHHHHHHH
Q 028114 5 ASMPKVELHAHLNGSIRDSTLLELARVLGEKGVIVF-SDVEHV---IM-KSDRSLHEVFKLFDLIHVLTT-DHATVTRIT 78 (213)
Q Consensus 5 ~~lPK~eLH~HL~Gsi~~~tl~~la~~~~~~g~~~~-~~~~~~---~~-~~~~~l~~F~~~f~~~~~ll~-~~~~~~~~~ 78 (213)
..|||+|||+||+||++|+|+++||++ +|+.++ .+++++ +. .++.+|.+|++.|..+..+++ +++++++++
T Consensus 4 ~~lPK~ELH~HL~Gsl~p~tl~~La~~---~~~~lp~~~~~~l~~~~~~~~~~~L~~fl~~f~~~~~vl~~~~edl~~~a 80 (367)
T 3iar_A 4 FDKPKVELHVHLDGSIKPETILYYGRR---RGIALPANTAEGLLNVIGMDKPLTLPDFLAKFDYYMPAIAGCREAIKRIA 80 (367)
T ss_dssp CCSCEEECCBBGGGSCCHHHHHHHHHH---HTCCCSCSSHHHHHHHHCCSSCCCHHHHHGGGGGTHHHHTTCHHHHHHHH
T ss_pred CCCCeeEeeecccCCCCHHHHHHHHHh---cCCCCCcCCHHHHHHHhccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 479999999999999999999999996 677663 355544 32 345899999999998777776 899999999
Q ss_pred HHHHHHHHhCCCeEEEEeeCcCccccC------------CCCHHHHHHHHHHHHHhhhhhcccccccccccccccccccc
Q 028114 79 QEVVEDFASENIVYLELRTTPKRNESI------------GMSKRSYMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKNM 146 (213)
Q Consensus 79 ~~~~~~~a~dnV~Y~Elr~~P~~~~~~------------~~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (213)
+++++++++|||+|+|+|++|..+... |++.+++++++.++++++.+
T Consensus 81 ~e~~ed~a~dgV~Y~Eir~~P~~~~~~~~~~~~~~~~~~gl~~~~vv~~v~~~~~~a~~--------------------- 139 (367)
T 3iar_A 81 YEFVEMKAKEGVVYVEVRYSPHLLANSKVEPIPWNQAEGDLTPDEVVALVGQGLQEGER--------------------- 139 (367)
T ss_dssp HHHHHHHHTTTEEEEEEEECGGGGCSSSCSSCGGGCCCCSCCHHHHHHHHHHHHHHHHH---------------------
T ss_pred HHHHHHHHHcCCEEEEEEecHHHhhhccccccccccccCCCCHHHHHHHHHHHHHHHHH---------------------
Confidence 999999999999999999999887644 89999999999999998864
Q ss_pred cccccCCCCCCcEEEEEEEEeCCCCHHHHHHHHHHHHhhCCCCeEEEecCCCCCCCCc---cchhhccC
Q 028114 147 NDACNGTRGKKIYVRLLLSIDRRETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEW---YSFVTDHS 212 (213)
Q Consensus 147 ~~~~~~~~~~~i~vrlI~~~~R~~~~~~~~~~~~~a~~~~~~~vvG~dL~G~E~~~~~---~~f~~~~~ 212 (213)
++||++|+|+|++|+.+. ++.++++++.++++++||||||+|+|..+++ ..|.++|.
T Consensus 140 --------~~gi~~~lI~~~~R~~~~-~a~e~~~la~~~~~~~vvG~dL~g~E~~~~~~~~~~f~~~f~ 199 (367)
T 3iar_A 140 --------DFGVKARSILCCMRHQPN-WSPKVVELCKKYQQQTVVAIDLAGDETIPGSSLLPGHVQAYQ 199 (367)
T ss_dssp --------HHCCEEEEEEEEETTCGG-GHHHHHHHHHHTTTTTEEEEEEESCTTSTTGGGCHHHHHHHH
T ss_pred --------hcCCeEEEEEEeCCCCCH-HHHHHHHHHHhhCCCCEEEEcCCCcccCCCcchHHHHHHHHH
Confidence 569999999999999854 6789999999998888999999999999887 57777663
No 5
>2pgf_A Adenosine deaminase; metallo-dependent hydrolase, structural genomics, medical ST genomics of pathogenic protozoa consortium, MSGPP; HET: MSE ADN; 1.89A {Plasmodium vivax} PDB: 2pgr_A* 2qvn_A* 3ewc_A* 3ewd_A* 2amx_A
Probab=99.97 E-value=4.1e-31 Score=234.15 Aligned_cols=177 Identities=19% Similarity=0.246 Sum_probs=151.6
Q ss_pred hhhhcCCceeeccccCCCCCHHHHHHHHHHhccCCCCCchhhhH---HHh--cCCCCHHHHHHhhHHHHHhcCCHHHHHH
Q 028114 2 EWFASMPKVELHAHLNGSIRDSTLLELARVLGEKGVIVFSDVEH---VIM--KSDRSLHEVFKLFDLIHVLTTDHATVTR 76 (213)
Q Consensus 2 ~~l~~lPK~eLH~HL~Gsi~~~tl~~la~~~~~~g~~~~~~~~~---~~~--~~~~~l~~F~~~f~~~~~ll~~~~~~~~ 76 (213)
+||++|||+|||+||+||++++|+++||++ +|+....+.++ .+. ..+.+|++|++.|.....++++++++++
T Consensus 39 ~~~~~lPK~eLH~Hl~gsl~~~~l~~la~~---~~~~p~~~~~~l~~~~~~~~~~~~L~~~l~~~~~~~~~~~t~ed~~~ 115 (371)
T 2pgf_A 39 KIWKRIPKCELHCHLDLCFSADFFVSCIRK---YNLQPNLSDEEVLDYYLFAKGGKSLGEFVEKAIKVADIFHDYEVIED 115 (371)
T ss_dssp HHHHHSCEEEEEEEGGGCCCHHHHHHHHHH---TTCCTTSCHHHHHHHHCCTTCCSCHHHHHHHHHHHGGGCCSHHHHHH
T ss_pred HHHHhCcHhhheeCCccCCCHHHHHHHHHH---cCCCCCCCHHHHHHHHhcccCCCCHHHHHHHHHHHHHHhCCHHHHHH
Confidence 579999999999999999999999999996 56642112222 222 3567999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCeEEEEeeCcCc-cccCCCCHHHHHHHHHHHHHhhhhhcccccccccccccccccccccccccCCCC
Q 028114 77 ITQEVVEDFASENIVYLELRTTPKR-NESIGMSKRSYMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKNMNDACNGTRG 155 (213)
Q Consensus 77 ~~~~~~~~~a~dnV~Y~Elr~~P~~-~~~~~~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (213)
.+++++++++++||.|+|+|++|.. +...|++.+++++++.++++++.+.+ .
T Consensus 116 ~a~~~l~e~~~~GV~y~E~r~dp~~~~~~~gl~~~~~~~a~~~~~~~a~~~~---------------------------~ 168 (371)
T 2pgf_A 116 LAKHAVFNKYKEGVVLMEFRYSPTFVAFKYNLDIELIHQAIVKGIKEVVELL---------------------------D 168 (371)
T ss_dssp HHHHHHHHHHHHTEEEEEEEECHHHHHTTTTCCHHHHHHHHHHHHHHHHHHT---------------------------T
T ss_pred HHHHHHHHHHHCCCEEEEEEECcccccccCCCCHHHHHHHHHHHHHHHHHHc---------------------------c
Confidence 9999999999999999999999976 66779999999999999999886521 2
Q ss_pred CCcEEEEEEEEeCCCCHHHHHHHHHHHHhhCCCCeEEEecCCCCCCCCccchhhcc
Q 028114 156 KKIYVRLLLSIDRRETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWYSFVTDH 211 (213)
Q Consensus 156 ~~i~vrlI~~~~R~~~~~~~~~~~~~a~~~~~~~vvG~dL~G~E~~~~~~~f~~~~ 211 (213)
.||.+++|+|+.|+.+++.+.+.++.+.+ .+++|+|||++|+|.. +..|.++|
T Consensus 169 ~gi~~~li~~~~r~~~~~~~~~~~~~a~~-~~~~vvg~dl~g~e~~--~~~~~~~~ 221 (371)
T 2pgf_A 169 HKIHVALMCIGDTGHEAANIKASADFCLK-HKADFVGFDHGGHEVD--LKEYKEIF 221 (371)
T ss_dssp TSSEEEEEEEEEESSTTCCHHHHHHHHHH-TTTTEEEEEEEESCCC--GGGGHHHH
T ss_pred CCCEEEEEEEecCCCCHHHHHHHHHHHHh-CCCCEEEEecCCCccc--HHHHHHHH
Confidence 39999999999999998889999999988 6778999999999976 66777665
No 6
>3lgd_A Adenosine deaminase CECR1; TIM barrel, dimerization and receptor binding domains, glyco hydrolase, growth factor, secreted; HET: NAG; 2.00A {Homo sapiens} PDB: 3lgg_A*
Probab=99.96 E-value=1.7e-28 Score=224.41 Aligned_cols=184 Identities=17% Similarity=0.255 Sum_probs=146.5
Q ss_pred hhhhcCCc-eeeccccCCCCCHHHHHHHHHHh-c------cCCC----------------CC---ch----------hhh
Q 028114 2 EWFASMPK-VELHAHLNGSIRDSTLLELARVL-G------EKGV----------------IV---FS----------DVE 44 (213)
Q Consensus 2 ~~l~~lPK-~eLH~HL~Gsi~~~tl~~la~~~-~------~~g~----------------~~---~~----------~~~ 44 (213)
.++++||| +-||+|+++++++++|++.+... + .+|. +. .+ .++
T Consensus 74 ~i~~~MPKGa~LH~H~~a~~~~d~li~~~~~~~~~~i~~~~~~~~~f~f~~~~p~~~~~~~~w~~~~~~r~~~~~~~~f~ 153 (508)
T 3lgd_A 74 NILRMMPKGAALHLHDIGIVTMDWLVRNVTYRPHCHICFTPRGIMQFRFAHPTPRPSEKCSKWILLEDYRKRVQNVTEFD 153 (508)
T ss_dssp HHHHHSCCEEEEEEETTSSSCHHHHHHTGGGSTTEEEEECTTCCEEEEECSSCCCCCSSCSCCEEHHHHHHSCSCHHHHH
T ss_pred HHHHHCCCcccccccccccCCHHHHHHHHhcCCCeEEEecCCCceEEEecCCCCCCCCCCCCchhHHHHHHHcCCHHHHH
Confidence 47899999 99999999999999999955532 1 1110 00 00 011
Q ss_pred HHHh---------------cCCCCHHHHHHhhHHHHHhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeeC--cCccc-cCC
Q 028114 45 HVIM---------------KSDRSLHEVFKLFDLIHVLTTDHATVTRITQEVVEDFASENIVYLELRTT--PKRNE-SIG 106 (213)
Q Consensus 45 ~~~~---------------~~~~~l~~F~~~f~~~~~ll~~~~~~~~~~~~~~~~~a~dnV~Y~Elr~~--P~~~~-~~~ 106 (213)
++.. .....|.+|++.|..+.++++|+++++++++++++++++|||+|+|+|++ |.... ..|
T Consensus 154 ~~l~~~~~l~~~~~~~~~~~~~~~w~~F~~~f~~~~~ll~~~~~~~~~~~e~l~d~a~dgV~Y~ElR~~f~p~~~~~g~~ 233 (508)
T 3lgd_A 154 DSLLRNFTLVTQHPEVIYTNQNVVWSKFETIFFTISGLIHYAPVFRDYVFRSMQEFYEDNVLYMEIRARLLPVYELSGEH 233 (508)
T ss_dssp HHHHHHSCCCCSCHHHHCCSHHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTEEEEEEEECCCCCBCTTSCB
T ss_pred HHHHHhcccccCCcccccCCHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCceEEEEeecCchHhhccCCC
Confidence 1111 11247899999999999999999999999999999999999999999965 44433 346
Q ss_pred CCHHHHHHHHHHHHHhhhhhcccccccccccccccccccccccccCCCCCCcEEEEEEEEeCCCCHHHHHHHHHHHHhhC
Q 028114 107 MSKRSYMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKNMNDACNGTRGKKIYVRLLLSIDRRETTEAAMETVKLALEMR 186 (213)
Q Consensus 107 ~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vrlI~~~~R~~~~~~~~~~~~~a~~~~ 186 (213)
++.+++++++.++++++++.+ ..+|++|+|+|++|+.+++.+.+++++|.+++
T Consensus 234 l~~~~vv~~v~~~~~~~~~~~---------------------------~~fI~~rlI~~~~R~~~~e~a~e~l~~a~~~~ 286 (508)
T 3lgd_A 234 HDEEWSVKTYQEVAQKFVETH---------------------------PEFIGIKIIYSDHRSKDVAVIAESIRMAMGLR 286 (508)
T ss_dssp CCHHHHHHHHHHHHHHHHHHC---------------------------TTCCEEEEEEEEETTSCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhc---------------------------CCceEEEEEEEecCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999987532 12499999999999999999999999999875
Q ss_pred ---CCCeEEEecCCCCCCC-CccchhhccC
Q 028114 187 ---DLGVVGIDLSGNPTKG-EWYSFVTDHS 212 (213)
Q Consensus 187 ---~~~vvG~dL~G~E~~~-~~~~f~~~~~ 212 (213)
+++||||||+|+|+.| |+.+|.++|.
T Consensus 287 ~~~~~~VvG~DLaG~E~~g~p~~~f~~~f~ 316 (508)
T 3lgd_A 287 IKFPTVVAGFDLVGHEDTGHSLHDYKEALM 316 (508)
T ss_dssp HHCTTTEEEEEEESCTTTSCCTGGGHHHHT
T ss_pred hhCCCceEEeccCCCCCCCCCHHHHHHHHH
Confidence 5789999999999765 5689999875
No 7
>2a3l_A AMP deaminase, AMPD; atampd, AT2G38280, adenosine 5'-monophosphate deaminase, COF 5'-phosphate, structural genomics; HET: CF5; 3.34A {Arabidopsis thaliana} SCOP: c.1.9.1
Probab=99.83 E-value=4.5e-22 Score=187.37 Aligned_cols=163 Identities=17% Similarity=0.157 Sum_probs=103.2
Q ss_pred hhhhcCCceeeccccCCCCCHHHHHHHHHHhcc-CCCCC--c-----hhhhHHHhc--------------------CCCC
Q 028114 2 EWFASMPKVELHAHLNGSIRDSTLLELARVLGE-KGVIV--F-----SDVEHVIMK--------------------SDRS 53 (213)
Q Consensus 2 ~~l~~lPK~eLH~HL~Gsi~~~tl~~la~~~~~-~g~~~--~-----~~~~~~~~~--------------------~~~~ 53 (213)
+|.. .||||||+||+||+++++|++++++..+ ++-.. . -++++++.. .+..
T Consensus 243 dFy~-~~KVDlHvHLsg~m~~~~LLefik~k~~~~pd~vv~~~~Gk~~TL~evF~~~~l~~ydltvd~L~~~ad~~~F~r 321 (701)
T 2a3l_A 243 DFYN-VRKVDTHVHHSACMNQKHLLRFIKSKLRKEPDEVVIFRDGTYLTLREVFESLDLTGYDLNVDLLDVHADKSTFHR 321 (701)
T ss_dssp CTTT-SCEEEEEEETTTCSCHHHHHHHHHHHHHTCCSCCCEEETTEEECHHHHHHHHSSCSTTCCSTTCCCCSCSSCCCC
T ss_pred cccc-CCccceeecccCCCCHHHHHHHHHhhccCCCCceEecCCCCcccHHHHHHHcCCccccccccccccccccchhhh
Confidence 3554 4999999999999999999999976321 11000 0 011111110 0111
Q ss_pred HH------------HHHHhhHHHHHhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeeCcCccccCCCCHHHHHHHHHHHHH
Q 028114 54 LH------------EVFKLFDLIHVLTTDHATVTRITQEVVEDFASENIVYLELRTTPKRNESIGMSKRSYMDAVVEGLR 121 (213)
Q Consensus 54 l~------------~F~~~f~~~~~ll~~~~~~~~~~~~~~~~~a~dnV~Y~Elr~~P~~~~~~~~~~~~~l~~v~~~~~ 121 (213)
|+ ++.+.|..+...+ +.++++++++++++++++|||+|+|+|++|. ...+...+.++ +++.
T Consensus 322 Fd~Fn~kynp~g~~~LreiFlktdn~i-~~e~l~ri~~evled~a~dgV~Y~ElR~sp~--~~~~~~~~~l~----~~v~ 394 (701)
T 2a3l_A 322 FDKFNLKYNPCGQSRLREIFLKQDNLI-QGRFLGEITKQVFSDLEASKYQMAEYRISIY--GRKMSEWDQLA----SWIV 394 (701)
T ss_dssp CSSSHHHHCCSSCCHHHHHHSCSSSTT-TTTTHHHHHHHHHHHHTTSSSEEEEEEEECC--SSSSTHHHHHH----HHHH
T ss_pred hcccccccChhhHHHHHHHHHHhcccc-cHHHHHHHHHHHHHHHHHcCCeEEEEEeccc--cCCCCcHHHHH----HHHH
Confidence 21 2222332222323 6689999999999999999999999999994 33444444444 4443
Q ss_pred hhhhhcccccccccccccccccccccccccCCCCCCcEEEEEEEEeCCCCHHHHHHH---------------HHH-----
Q 028114 122 AVSAVDVDFASRSIDVRRPVNTKNMNDACNGTRGKKIYVRLLLSIDRRETTEAAMET---------------VKL----- 181 (213)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vrlI~~~~R~~~~~~~~~~---------------~~~----- 181 (213)
+.. ..++.+|+|+++.|..++..+... ++.
T Consensus 395 ~~~------------------------------~~~~~vr~ii~i~R~~~~~~a~~~v~~F~~~l~nIF~PL~e~t~~p~ 444 (701)
T 2a3l_A 395 NND------------------------------LYSENVVWLIQLPRLYNIYKDMGIVTSFQNILDNIFIPLFEATVDPD 444 (701)
T ss_dssp TTT------------------------------CCCSSEEEEEEEECCHHHHTTSSSCSSTHHHHHHHSSHHHHHHHCGG
T ss_pred hcC------------------------------ccCcceEEEEEeecccCHHHhcChHHHHHHHHHhhhhHHHHhhcCcc
Confidence 321 247889999999999776554222 122
Q ss_pred ---HHhhCCCCeEEEecCCCCCCC
Q 028114 182 ---ALEMRDLGVVGIDLSGNPTKG 202 (213)
Q Consensus 182 ---a~~~~~~~vvG~dL~G~E~~~ 202 (213)
++++.+++||||||+|+|.++
T Consensus 445 ~~~~l~~~~~~VvGfDL~G~E~~~ 468 (701)
T 2a3l_A 445 SHPQLHVFLKQVVGFDLVDDESKP 468 (701)
T ss_dssp GSTTTHHHHTTEEEEEEESCTTSC
T ss_pred cCHHHHhcCCCEEEEEeecCCCcc
Confidence 223345689999999999987
No 8
>3h4u_A Amidohydrolase; signature of Zn ligands, structural genomics, NYSGXRC, target 9236E, PSI-2, protein structure initiative; 2.20A {Unidentified} PDB: 3hpa_A
Probab=86.04 E-value=7.8 Score=33.64 Aligned_cols=68 Identities=13% Similarity=0.126 Sum_probs=46.6
Q ss_pred CCc-eeeccccCCCCCHHHHHHHHHHhccCCCCCchhhhHHHhcCCCCHHHHHHhhHHHHHhcCCHHHHHHHHHHHHHHH
Q 028114 7 MPK-VELHAHLNGSIRDSTLLELARVLGEKGVIVFSDVEHVIMKSDRSLHEVFKLFDLIHVLTTDHATVTRITQEVVEDF 85 (213)
Q Consensus 7 lPK-~eLH~HL~Gsi~~~tl~~la~~~~~~g~~~~~~~~~~~~~~~~~l~~F~~~f~~~~~ll~~~~~~~~~~~~~~~~~ 85 (213)
||- +|.|+|+.++... |.. . ....++.+++..+..+.. ..+++++...+...+.++
T Consensus 86 ~PGlID~H~Hl~~~~~r-------------g~~--~-------~~~~~l~~~l~~~~~~~~-~~~~e~~~~~~~~~~~~~ 142 (479)
T 3h4u_A 86 IPGLVNTHHHMYQSLTR-------------AVP--A-------AQNAELFGWLTNLYKIWA-HLTPEMIEVSTLTAMAEL 142 (479)
T ss_dssp EECEEECCCCGGGGGSC-------------SCT--T-------TTTCCHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHHH
T ss_pred ecceeecccccchhhhc-------------ccc--c-------cCCCCHHHHHHHhhhhhh-hCCHHHHHHHHHHHHHHH
Confidence 677 9999999665321 110 0 012456666665533333 367889999999999999
Q ss_pred HhCCCeEEEEee
Q 028114 86 ASENIVYLELRT 97 (213)
Q Consensus 86 a~dnV~Y~Elr~ 97 (213)
.+.||.++.-..
T Consensus 143 l~~GvTtv~d~~ 154 (479)
T 3h4u_A 143 LQSGCTTSSDHL 154 (479)
T ss_dssp HTTTEEEEECCB
T ss_pred HhCCeEEEEECc
Confidence 999999998763
No 9
>4dyk_A Amidohydrolase; adenosine deaminase, nysgrc, structural GENO PSI-biology, NEW YORK structural genomics research consorti hydrolase; 2.00A {Pseudomonas aeruginosa}
Probab=86.03 E-value=5.2 Score=34.43 Aligned_cols=64 Identities=17% Similarity=0.127 Sum_probs=42.6
Q ss_pred CCc-eeeccccCCCCCHHHHHHHHHHhccCCCCCchhhhHHHhcCCCCHHHHHHhhHHH-HHhcCCHHHHHHHHHHHHHH
Q 028114 7 MPK-VELHAHLNGSIRDSTLLELARVLGEKGVIVFSDVEHVIMKSDRSLHEVFKLFDLI-HVLTTDHATVTRITQEVVED 84 (213)
Q Consensus 7 lPK-~eLH~HL~Gsi~~~tl~~la~~~~~~g~~~~~~~~~~~~~~~~~l~~F~~~f~~~-~~ll~~~~~~~~~~~~~~~~ 84 (213)
||- +|.|+|+..+.. + |.. ...++.+++..+.+. ..-..+++++...+...+.+
T Consensus 65 ~PG~ID~H~H~~~~~~--------~-----g~~-----------~~~~l~~wl~~~~~~~~~~~~~~e~~~~~~~~~~~~ 120 (451)
T 4dyk_A 65 APGLVNAHGHSAMSLF--------R-----GLA-----------DDLPLMTWLQDHIWPAEGQWVSEDFIRDGTELAIAE 120 (451)
T ss_dssp EECEEECCCCGGGGGG--------T-----TSS-----------CSSCHHHHHHHTHHHHHHHHCSHHHHHHHHHHHHHH
T ss_pred eecccchhhChhhHHh--------c-----cCC-----------CCCCHHHHHHHhhhhhhhccCCHHHHHHHHHHHHHH
Confidence 677 999999974321 1 211 113455666554432 22357888899999999999
Q ss_pred HHhCCCeEEE
Q 028114 85 FASENIVYLE 94 (213)
Q Consensus 85 ~a~dnV~Y~E 94 (213)
+.+.||.++-
T Consensus 121 ~l~~GvTtv~ 130 (451)
T 4dyk_A 121 QVKGGITCFS 130 (451)
T ss_dssp HHHTTEEEEE
T ss_pred HHhCCcEEEE
Confidence 9999998883
No 10
>2yxo_A Histidinol phosphatase; metal-dependent, hydrolase; 1.60A {Thermus thermophilus} PDB: 2yz5_A 2z4g_A
Probab=77.78 E-value=1.8 Score=34.92 Aligned_cols=27 Identities=33% Similarity=0.409 Sum_probs=22.9
Q ss_pred ceeecccc----CCCCCHHHHHHHHHHhccCCCC
Q 028114 9 KVELHAHL----NGSIRDSTLLELARVLGEKGVI 38 (213)
Q Consensus 9 K~eLH~HL----~Gsi~~~tl~~la~~~~~~g~~ 38 (213)
++|||+|. +|+.+++.+++.|.+ .|+.
T Consensus 1 ~~DlH~Ht~~S~DG~~~~ee~v~~A~~---~Gl~ 31 (267)
T 2yxo_A 1 MVDSHVHTPLCGHAEGHPEAYLEEARA---KGLK 31 (267)
T ss_dssp CEEEEECCGGGSSCCSCHHHHHHHHHH---TTCS
T ss_pred CCccCcCcCCCCCCCCCHHHHHHHHHH---cCCC
Confidence 58999995 888999999999996 5664
No 11
>3ls9_A Triazine hydrolase; atrazine chlorohydrolase TRZN; 1.40A {Arthrobacter aurescens} PDB: 3lsc_A* 3lsb_A*
Probab=77.12 E-value=31 Score=29.32 Aligned_cols=68 Identities=9% Similarity=0.062 Sum_probs=46.1
Q ss_pred CCc-eeeccccCCCCCHHHHHHHHHHhccCCCCCchhhhHHHhcCCCCHHHHHHhh----HHHHH-hcCCHHHHHHHHHH
Q 028114 7 MPK-VELHAHLNGSIRDSTLLELARVLGEKGVIVFSDVEHVIMKSDRSLHEVFKLF----DLIHV-LTTDHATVTRITQE 80 (213)
Q Consensus 7 lPK-~eLH~HL~Gsi~~~tl~~la~~~~~~g~~~~~~~~~~~~~~~~~l~~F~~~f----~~~~~-ll~~~~~~~~~~~~ 80 (213)
||- +|.|+|+..+.. .|... ....++.+++..+ ..+.. -..+++++......
T Consensus 56 ~PG~ID~H~H~~~~~~-------------~g~~~---------~~~~~l~~~l~~~~~~~~~~~~~~~~~~e~~~~~~~~ 113 (456)
T 3ls9_A 56 LPGLINSHQHLYEGAM-------------RAIPQ---------LERVTMASWLEGVLTRSAGWWRDGKFGPDVIREVARA 113 (456)
T ss_dssp EECEEEEEECGGGGGG-------------BTCGG---------GSSCCHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHH
T ss_pred ecCeeecccccchhhh-------------ccccc---------CCCCCHHHHHHHhccccccccccccCCHHHHHHHHHH
Confidence 677 999999976531 12110 0124566666554 21222 13688999999999
Q ss_pred HHHHHHhCCCeEEEEe
Q 028114 81 VVEDFASENIVYLELR 96 (213)
Q Consensus 81 ~~~~~a~dnV~Y~Elr 96 (213)
.+.++.+.||.+++-.
T Consensus 114 ~~~~~l~~GvTtv~d~ 129 (456)
T 3ls9_A 114 VLLESLLGGITTVADQ 129 (456)
T ss_dssp HHHHHHHTTEEEEEEE
T ss_pred HHHHHHhCCeeEEEec
Confidence 9999999999999987
No 12
>2yb1_A Amidohydrolase; HET: AMP; 1.90A {Chromobacterium violaceum} PDB: 2yb4_A
Probab=76.78 E-value=2 Score=35.80 Aligned_cols=29 Identities=21% Similarity=0.502 Sum_probs=23.7
Q ss_pred CCceeecccc---CCCCCHHHHHHHHHHhccCCCC
Q 028114 7 MPKVELHAHL---NGSIRDSTLLELARVLGEKGVI 38 (213)
Q Consensus 7 lPK~eLH~HL---~Gsi~~~tl~~la~~~~~~g~~ 38 (213)
|-++|||+|- +|+.+|+.+++.|.+ .|+.
T Consensus 1 M~~~DLH~Ht~~SDg~~~~~elv~~A~~---~Gl~ 32 (292)
T 2yb1_A 1 MANIDLHFHSRTSDGALTPTEVIDRAAA---RAPA 32 (292)
T ss_dssp -CCEECCBCCTTTTCSSCHHHHHHHHHT---TCCS
T ss_pred CCccccccCCCccCCCCCHHHHHHHHHH---CCCC
Confidence 4479999998 589999999999995 6664
No 13
>4f0r_A 5-methylthioadenosine/S-adenosylhomocysteine DEAM; structural genomics, PSI-biology; HET: MSE MTA; 1.80A {Chromobacterium violaceum} PDB: 4f0s_A*
Probab=70.83 E-value=31 Score=29.40 Aligned_cols=66 Identities=17% Similarity=0.180 Sum_probs=40.8
Q ss_pred CCc-eeeccccCCCCCHHHHHHHHHHhccCCCCCchhhhHHHhcCCCCHHHHHHhhHHH-HHhcCCHHHHHHHHHHHHHH
Q 028114 7 MPK-VELHAHLNGSIRDSTLLELARVLGEKGVIVFSDVEHVIMKSDRSLHEVFKLFDLI-HVLTTDHATVTRITQEVVED 84 (213)
Q Consensus 7 lPK-~eLH~HL~Gsi~~~tl~~la~~~~~~g~~~~~~~~~~~~~~~~~l~~F~~~f~~~-~~ll~~~~~~~~~~~~~~~~ 84 (213)
||- +|.|+|+..+.. + |.. ...++.+++..+.+. ..-..+++++...+...+.+
T Consensus 63 ~PGlID~H~Hl~~~~~--------~-----g~~-----------~~~~~~~wl~~~~~~~~~~~~~~e~~~~~~~~~~~~ 118 (447)
T 4f0r_A 63 MPGLINLHGHSAMSLL--------R-----GLA-----------DDKALMDWLTNYIWPTEGKHVHDDFVFDGSLLAMGE 118 (447)
T ss_dssp EECEEEEEECGGGGGG--------T-----TSS-----------CSSCHHHHHHHTHHHHHHHHCSHHHHHHHHHHHHHH
T ss_pred eeCccchhhChhhHhh--------c-----cCC-----------CCCCHHHHHHHhhhhhhhccCCHHHHHHHHHHHHHH
Confidence 687 999999965431 1 110 112344454443322 22256777888888888888
Q ss_pred HHhCCCeEEEEe
Q 028114 85 FASENIVYLELR 96 (213)
Q Consensus 85 ~a~dnV~Y~Elr 96 (213)
+.+.||.++.-.
T Consensus 119 ~l~~GvTtv~d~ 130 (447)
T 4f0r_A 119 MIRGGTTTINDM 130 (447)
T ss_dssp HHHTTEEEEEEC
T ss_pred HHhCCcEEEEEc
Confidence 888998887654
No 14
>2wje_A CPS4B, tyrosine-protein phosphatase CPSB; capsule biogenesis/degradation, manganese, hydrolase, exopolysaccharide synthesis; 1.90A {Streptococcus pneumoniae} PDB: 2wjd_A 2wjf_A 3qy8_A
Probab=65.83 E-value=3.7 Score=33.03 Aligned_cols=29 Identities=21% Similarity=0.354 Sum_probs=21.2
Q ss_pred eeecccc-----CCCCCHHHHHHHHHHhccCCCC
Q 028114 10 VELHAHL-----NGSIRDSTLLELARVLGEKGVI 38 (213)
Q Consensus 10 ~eLH~HL-----~Gsi~~~tl~~la~~~~~~g~~ 38 (213)
+|+|+|. +|+-++++.+++++..-+.|+.
T Consensus 6 ~D~H~Ht~~~~ddg~~~~e~~~e~i~~A~~~Gi~ 39 (247)
T 2wje_A 6 IDIHSHIVFDVDDGPKSREESKALLAESYRQGVR 39 (247)
T ss_dssp EECCBCCSTTSSSSCSSHHHHHHHHHHHHHTTEE
T ss_pred EEEecccCCCCCCCCCCHHHHHHHHHHHHHCCCC
Confidence 8999999 7889999866655543346763
No 15
>2anu_A Hypothetical protein TM0559; predicted metal-dependent phosphoesterase (PHP famil structural genomics, joint center for structural genomics; 2.40A {Thermotoga maritima} SCOP: c.6.3.1
Probab=65.67 E-value=4.6 Score=32.56 Aligned_cols=28 Identities=25% Similarity=0.426 Sum_probs=23.9
Q ss_pred ceeecccc---CCCCCHHHHHHHHHHhccCCCCC
Q 028114 9 KVELHAHL---NGSIRDSTLLELARVLGEKGVIV 39 (213)
Q Consensus 9 K~eLH~HL---~Gsi~~~tl~~la~~~~~~g~~~ 39 (213)
++|||+|. +|..+++.+++.|.+ .|+..
T Consensus 21 ~~DlH~Ht~~SDg~~t~ee~v~~A~~---~Gl~~ 51 (255)
T 2anu_A 21 LCDFHVHTNMSDGHLPLGEVVDLFGK---HGVDV 51 (255)
T ss_dssp EEEEEECCTTTTCSSCHHHHHHHHHH---TTCSE
T ss_pred EEEEeecCCCcCCCCCHHHHHHHHHH---CCCCE
Confidence 59999999 799999999999985 67653
No 16
>4dzh_A Amidohydrolase; adenosine deaminase, nysgrc, structural GENO YORK structural genomics research consortium; 1.55A {Xanthomonas campestris PV}
Probab=65.12 E-value=52 Score=28.38 Aligned_cols=65 Identities=18% Similarity=0.187 Sum_probs=41.1
Q ss_pred CCc-eeeccccCCCCCHHHHHHHHHHhccCCCCCchhhhHHHhcCCCCHHHHHHhhHH-HHHhcCCHHHHHHHHHHHHHH
Q 028114 7 MPK-VELHAHLNGSIRDSTLLELARVLGEKGVIVFSDVEHVIMKSDRSLHEVFKLFDL-IHVLTTDHATVTRITQEVVED 84 (213)
Q Consensus 7 lPK-~eLH~HL~Gsi~~~tl~~la~~~~~~g~~~~~~~~~~~~~~~~~l~~F~~~f~~-~~~ll~~~~~~~~~~~~~~~~ 84 (213)
||- +|.|+|+.++.. + |.. ...++.+++..+.+ ...-..+++++...+...+.+
T Consensus 72 ~PGlID~H~Hl~~~~~--------~-----g~~-----------~~~~l~~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~ 127 (472)
T 4dzh_A 72 MPGLVNAHTHNPMTLL--------R-----GVA-----------DDLPLMVWLQQHIWPVEAAVIGPEFVADGTTLAIAE 127 (472)
T ss_dssp EECEEEEEECGGGGGG--------T-----TSS-----------CSCCHHHHHHHTHHHHHHHHCSHHHHHHHHHHHHHH
T ss_pred EECccccccChhhHHh--------c-----ccc-----------CCCCHHHHHHHhhhhhhhccCCHHHHHHHHHHHHHH
Confidence 677 999999987641 1 211 11234445444322 222246778888888888888
Q ss_pred HHhCCCeEEEE
Q 028114 85 FASENIVYLEL 95 (213)
Q Consensus 85 ~a~dnV~Y~El 95 (213)
+.+.||..+.-
T Consensus 128 ~l~~GvTtv~d 138 (472)
T 4dzh_A 128 MLRGGTTCVNE 138 (472)
T ss_dssp HHHTTEEEEEE
T ss_pred HHhCCcEEEEE
Confidence 88888887763
No 17
>1m65_A Hypothetical protein YCDX; structural genomics, beta-alpha-barrel, metallo-enzyme, STRU function project, S2F, unknown function; 1.57A {Escherichia coli} SCOP: c.6.3.1 PDB: 1m68_A 1pb0_A
Probab=63.84 E-value=4.8 Score=31.86 Aligned_cols=28 Identities=29% Similarity=0.294 Sum_probs=21.7
Q ss_pred CceeeccccC----CCCCHHHHHHHHHHhccCCCC
Q 028114 8 PKVELHAHLN----GSIRDSTLLELARVLGEKGVI 38 (213)
Q Consensus 8 PK~eLH~HL~----Gsi~~~tl~~la~~~~~~g~~ 38 (213)
=++|||+|.. |..+++.+++.|.+ .|+.
T Consensus 2 ~~~DlH~Ht~~Sd~g~~~~~e~v~~A~~---~Gl~ 33 (245)
T 1m65_A 2 YPVDLHMHTVASTHAYSTLSDYIAQAKQ---KGIK 33 (245)
T ss_dssp CCEECCBCCTTSTTCCCCHHHHHHHHHH---HTCC
T ss_pred CceEeCcCCCCCCCCCCcHHHHHHHHHH---CCCC
Confidence 3689999975 55599999999986 4553
No 18
>3o0f_A Putative metal-dependent phosphoesterase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: AMP; 1.94A {Bifidobacterium adolescentis} PDB: 3e0f_A*
Probab=56.47 E-value=8.6 Score=32.35 Aligned_cols=27 Identities=33% Similarity=0.486 Sum_probs=22.7
Q ss_pred ceeecccc---CCCCCHHHHHHHHHHhccCCCC
Q 028114 9 KVELHAHL---NGSIRDSTLLELARVLGEKGVI 38 (213)
Q Consensus 9 K~eLH~HL---~Gsi~~~tl~~la~~~~~~g~~ 38 (213)
++|||+|- +|+.+|+.+++.|.+ .|+.
T Consensus 14 ~~DLH~Hs~~SDG~~~~~elv~~A~~---~Gl~ 43 (301)
T 3o0f_A 14 GWDIHCHTVFSDGTETPRTLVEQARK---LGLH 43 (301)
T ss_dssp SEEEEECCTTTTCSSCHHHHHHHHHH---TTCS
T ss_pred eEEeeECCCCCCCCCCHHHHHHHHHH---cCCC
Confidence 49999997 589999999999996 5554
No 19
>3qy7_A Tyrosine-protein phosphatase YWQE; TIM barrel, polymerase and histindinol phosphatase(PHP)-like phosphatase, hydrolase; 1.62A {Bacillus subtilis} PDB: 3qy6_A
Probab=54.56 E-value=8.2 Score=31.59 Aligned_cols=26 Identities=19% Similarity=0.526 Sum_probs=19.6
Q ss_pred eeecccc-----CCCCCHHH---HHHHHHHhccCCCC
Q 028114 10 VELHAHL-----NGSIRDST---LLELARVLGEKGVI 38 (213)
Q Consensus 10 ~eLH~HL-----~Gsi~~~t---l~~la~~~~~~g~~ 38 (213)
+|+|+|. +|+.+++. +++.|. +.|+.
T Consensus 2 ~D~H~H~~~~~ddG~~~~~~sl~~~~~a~---~~G~~ 35 (262)
T 3qy7_A 2 IDIHCHILPAMDDGAGDSADSIEMARAAV---RQGIR 35 (262)
T ss_dssp EESSBCCSTTSSSSCSSHHHHHHHHHHHH---HTTCC
T ss_pred EEEeecCCCCCCCCCCCHHHHHHHHHHHH---HCCCC
Confidence 6999999 59999997 555555 36764
No 20
>3f2b_A DNA-directed DNA polymerase III alpha chain; DNA polymerase C, DNA polymerase III; HET: DGT; 2.39A {Geobacillus kaustophilus} PDB: 3f2c_A* 3f2d_A*
Probab=52.67 E-value=9.7 Score=37.54 Aligned_cols=26 Identities=31% Similarity=0.460 Sum_probs=22.9
Q ss_pred CCceeeccc-----cCCCCCHHHHHHHHHHh
Q 028114 7 MPKVELHAH-----LNGSIRDSTLLELARVL 32 (213)
Q Consensus 7 lPK~eLH~H-----L~Gsi~~~tl~~la~~~ 32 (213)
++.+|||+| ++|..+|+.+++.|++.
T Consensus 114 ~~~vdLH~HT~~S~lDG~~~~~eLv~~A~~~ 144 (1041)
T 3f2b_A 114 EKRVELHLHTPMSQMDAVTSVTKLIEQAKKW 144 (1041)
T ss_dssp SCCCBCCBCCTTSTTTCCSCHHHHHHHHHHT
T ss_pred cceEEcccCCcCccccccCCHHHHHHHHHHC
Confidence 567999999 68889999999999963
No 21
>2hnh_A DNA polymerase III alpha subunit; DNA replication, nucleotidyltransferase, beta, PHP, transferase; HET: DNA; 2.30A {Escherichia coli} PDB: 2hqa_A*
Probab=52.63 E-value=10 Score=36.92 Aligned_cols=25 Identities=28% Similarity=0.450 Sum_probs=21.8
Q ss_pred Cceeeccc-----cCCCCCHHHHHHHHHHh
Q 028114 8 PKVELHAH-----LNGSIRDSTLLELARVL 32 (213)
Q Consensus 8 PK~eLH~H-----L~Gsi~~~tl~~la~~~ 32 (213)
+.+|||+| |+|..+|+.+++.|++.
T Consensus 5 ~~vdLH~HT~~S~lDG~~~~~elv~~A~~~ 34 (910)
T 2hnh_A 5 RFVHLRVHSDYSMIDGLAKTAPLVKKAAAL 34 (910)
T ss_dssp CCCCCCBCCGGGSSSCCSCHHHHHHHHHHT
T ss_pred ceeeecccccCchhcccCCHHHHHHHHHHC
Confidence 36999999 47999999999999963
No 22
>3nzt_A Glutamate--cysteine ligase; structural genomics, center for structural genomics of infec diseases, csgid, alpha and beta proteins; HET: AMP; 2.00A {Francisella tularensis subsp}
Probab=47.66 E-value=18 Score=32.84 Aligned_cols=39 Identities=18% Similarity=0.310 Sum_probs=25.7
Q ss_pred HHHHHHhCCCeEEEEeeC-cCccccCCCCHHHH--HHHHHHH
Q 028114 81 VVEDFASENIVYLELRTT-PKRNESIGMSKRSY--MDAVVEG 119 (213)
Q Consensus 81 ~~~~~a~dnV~Y~Elr~~-P~~~~~~~~~~~~~--l~~v~~~ 119 (213)
-++.+.+.||.|+|+|.. .......|++.+++ ++.++--
T Consensus 320 P~~aL~~~GI~YIElR~lDlnPf~~~GIs~~~l~FL~lfLl~ 361 (525)
T 3nzt_A 320 PACALYNRGVEYVEVRVLDVDPFEPVGISKDTALFVEVMLMT 361 (525)
T ss_dssp HHHHHHHHCCCEEEECCCBCCTTSTTSCCHHHHHHHHHHHHH
T ss_pred chHHHHhcCCCEEEEEeecCCCCcccCcCHHHHHHHHHHHHH
Confidence 367788899999999965 22223457777655 5554433
No 23
>1zzm_A Putative deoxyribonuclease YJJV; hydrolaze, zinc, PEG, structural genomics, PSI; HET: P33; 1.80A {Escherichia coli} SCOP: c.1.9.12
Probab=47.24 E-value=14 Score=29.32 Aligned_cols=28 Identities=21% Similarity=0.278 Sum_probs=21.0
Q ss_pred CCceeeccccCCCC---CHHHHHHHHHHhccCCC
Q 028114 7 MPKVELHAHLNGSI---RDSTLLELARVLGEKGV 37 (213)
Q Consensus 7 lPK~eLH~HL~Gsi---~~~tl~~la~~~~~~g~ 37 (213)
|+-+|-||||+..- .++.+++-+.+ .|+
T Consensus 3 m~~iD~H~Hl~~~~~~~~~~~~l~~~~~---~Gv 33 (259)
T 1zzm_A 3 CRFIDTHCHFDFPPFSGDEEASLQRAAQ---AGV 33 (259)
T ss_dssp CCEEESCBCTTSTTTTTCHHHHHHHHHH---TTE
T ss_pred ceEEEeeecCCchhhccCHHHHHHHHHH---cCC
Confidence 77899999998753 56777776664 566
No 24
>3lnp_A Amidohydrolase family protein OLEI01672_1_465; TIM barrel, beta-fold, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Oleispira antarctica}
Probab=46.48 E-value=15 Score=31.60 Aligned_cols=29 Identities=10% Similarity=0.060 Sum_probs=21.9
Q ss_pred cCCHHHHHHHHHHHHHHHHhCCCeEEEEe
Q 028114 68 TTDHATVTRITQEVVEDFASENIVYLELR 96 (213)
Q Consensus 68 l~~~~~~~~~~~~~~~~~a~dnV~Y~Elr 96 (213)
..+++++...+...+.++.+.||..+.-.
T Consensus 124 ~~~~~~~~~~~~~~~~~~l~~GvTtv~d~ 152 (468)
T 3lnp_A 124 HVDEHFVKQGTELAIAEMIQSGTTTFADM 152 (468)
T ss_dssp HCSHHHHHHHHHHHHHHHHHTTEEEEEEC
T ss_pred cCCHHHHHHHHHHHHHHHHhCCcEEEEEc
Confidence 46677777778888888888888777643
No 25
>3e38_A Two-domain protein containing predicted PHP-like dependent phosphoesterase; structural genomics; 2.20A {Bacteroides vulgatus atcc 8482}
Probab=45.01 E-value=16 Score=31.31 Aligned_cols=27 Identities=22% Similarity=0.363 Sum_probs=22.7
Q ss_pred ceeecccc---CCCCCHHHHHHHHHHhccCCCC
Q 028114 9 KVELHAHL---NGSIRDSTLLELARVLGEKGVI 38 (213)
Q Consensus 9 K~eLH~HL---~Gsi~~~tl~~la~~~~~~g~~ 38 (213)
++|||+|- +|+.+++.+++.|.+ .|+.
T Consensus 20 ~~DlH~Ht~~SDg~~~~~elv~~A~~---~Gl~ 49 (343)
T 3e38_A 20 KCDFHMHSVFSDGLVWPTVRVDEAYR---DGLD 49 (343)
T ss_dssp EEECCBCCTTTTCSBCHHHHHHHHHH---TTCS
T ss_pred EEECCCCCCCCCCCCCHHHHHHHHHH---cCCC
Confidence 59999996 689999999999985 5654
No 26
>2w9m_A Polymerase X; SAXS, DNA repair, DNA polymerase, DNA replication; 2.46A {Deinococcus radiodurans}
Probab=38.82 E-value=22 Score=32.51 Aligned_cols=27 Identities=19% Similarity=0.212 Sum_probs=23.1
Q ss_pred ceeecccc---CCCCCHHHHHHHHHHhccCCCC
Q 028114 9 KVELHAHL---NGSIRDSTLLELARVLGEKGVI 38 (213)
Q Consensus 9 K~eLH~HL---~Gsi~~~tl~~la~~~~~~g~~ 38 (213)
++|||+|. +|+.+++.+++.|.+ .|+.
T Consensus 328 ~~DlH~HT~~SDG~~t~eemv~~A~~---~Gl~ 357 (578)
T 2w9m_A 328 RGMIHTHSTWSDGGASIREMAEATLT---LGHE 357 (578)
T ss_dssp CEEEEECCTTTTCSSCHHHHHHHHHH---TTCS
T ss_pred ceEEEecCCccCCCCCHHHHHHHHHH---CCCe
Confidence 49999998 699999999999985 6764
No 27
>2hpi_A DNA polymerase III alpha subunit; POL-beta-like nucleotidyltransferase fold, transferase; HET: DNA; 3.00A {Thermus aquaticus} PDB: 2hpm_A* 3e0d_A*
Probab=38.81 E-value=18 Score=36.22 Aligned_cols=26 Identities=23% Similarity=0.404 Sum_probs=22.2
Q ss_pred cCCceeecccc-----CCCCCHHHHHHHHHH
Q 028114 6 SMPKVELHAHL-----NGSIRDSTLLELARV 31 (213)
Q Consensus 6 ~lPK~eLH~HL-----~Gsi~~~tl~~la~~ 31 (213)
.|+-+|||+|= +|..+++.+++.|++
T Consensus 4 ~~~fvdLH~HT~~SlLDG~~~~~elv~~A~~ 34 (1220)
T 2hpi_A 4 KLKFAHLHQHTQFSLLDGAAKLQDLLKWVKE 34 (1220)
T ss_dssp -CCCCCCSBCCTTSTTTCCCCHHHHHHHHHH
T ss_pred CCcEeEcccccCCCcccccCCHHHHHHHHHh
Confidence 46679999994 688999999999996
No 28
>3b0x_A DNA polymerase beta family (X family); structural genomics, riken structural genomics/proteomics in RSGI, polxc, PHP, DRP lyase; HET: DNA DGT; 1.36A {Thermus thermophilus} PDB: 3au2_A* 3au6_A* 3auo_A* 3b0y_A*
Probab=36.73 E-value=24 Score=32.11 Aligned_cols=27 Identities=30% Similarity=0.327 Sum_probs=22.5
Q ss_pred ceeecccc---CCCCCHHHHHHHHHHhccCCCC
Q 028114 9 KVELHAHL---NGSIRDSTLLELARVLGEKGVI 38 (213)
Q Consensus 9 K~eLH~HL---~Gsi~~~tl~~la~~~~~~g~~ 38 (213)
++|||+|. +|+.+++.+++.|.+ .|+.
T Consensus 338 ~~DlH~HT~~SDG~~t~ee~v~~A~~---~G~~ 367 (575)
T 3b0x_A 338 KGDLQVHSTYSDGQNTLEELWEAAKT---MGYR 367 (575)
T ss_dssp CEEEEECCTTTTCSCCHHHHHHHHHH---TTCS
T ss_pred CeeEeecCCccCCCCCHHHHHHHHHH---CCCC
Confidence 48999998 688999999999885 6764
No 29
>1vk8_A Hypothetical protein TM0486; protein with possible role in cell WALL biogenesis, structur genomics, joint center for structural genomics; HET: UNL; 1.80A {Thermotoga maritima} SCOP: d.58.48.1
Probab=35.92 E-value=71 Score=22.44 Aligned_cols=49 Identities=20% Similarity=0.291 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHhCCCeEEEEeeCcCccccCCCCHHHHHHHHHHHHHhh
Q 028114 71 HATVTRITQEVVEDFASENIVYLELRTTPKRNESIGMSKRSYMDAVVEGLRAV 123 (213)
Q Consensus 71 ~~~~~~~~~~~~~~~a~dnV~Y~Elr~~P~~~~~~~~~~~~~l~~v~~~~~~~ 123 (213)
.+.+..++.++++-..+.|+.| +++|..-.-.| +.+++++.+.+..+..
T Consensus 28 ~~svs~~Va~~i~vi~~sGL~y---~~~pmgT~IEG-e~devm~vvk~~~e~~ 76 (106)
T 1vk8_A 28 DGRLHEVIDRAIEKISSWGMKY---EVGPSNTTVEG-EFEEIMDRVKELARYL 76 (106)
T ss_dssp GGGHHHHHHHHHHHHHTTCSCE---EECSSCEEEEE-CHHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHcCCCe---EeCCCccEEEc-CHHHHHHHHHHHHHHH
Confidence 3678889999999999999999 57887655455 6888888887776654
No 30
>3v7p_A Amidohydrolase family protein; iron binding site, enzyme functio initiative, EFI; HET: TLA; 1.35A {Nitratiruptor SP}
Probab=35.14 E-value=1.7e+02 Score=24.74 Aligned_cols=23 Identities=0% Similarity=-0.044 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHhCCCeEE
Q 028114 71 HATVTRITQEVVEDFASENIVYL 93 (213)
Q Consensus 71 ~~~~~~~~~~~~~~~a~dnV~Y~ 93 (213)
+++....+...+.++.+.|+..+
T Consensus 94 ~~~~~~~~~~~~~e~l~~GvTtv 116 (427)
T 3v7p_A 94 PLCDGACLEQTLSSIIQTGTTAI 116 (427)
T ss_dssp HHSCHHHHHHHHHHHHHTTEEEE
T ss_pred HHHHHHHHHHHHHHHHHhCCEEE
Confidence 44556667777788888888655
No 31
>1yix_A Deoxyribonuclease YCFH; TIM barrel, zinc ION, NEW YORK SGX center for structural genomics, nysgxrc; 1.90A {Escherichia coli} SCOP: c.1.9.12
Probab=31.54 E-value=28 Score=27.39 Aligned_cols=28 Identities=32% Similarity=0.389 Sum_probs=20.6
Q ss_pred CCceeeccccCCC------CCHHHHHHHHHHhccCCC
Q 028114 7 MPKVELHAHLNGS------IRDSTLLELARVLGEKGV 37 (213)
Q Consensus 7 lPK~eLH~HL~Gs------i~~~tl~~la~~~~~~g~ 37 (213)
|+.+|-|||+.-. -.++.+++.+.+ .|+
T Consensus 1 m~~iD~H~Hl~~~~~~~~~~~~~~~l~~~~~---~Gv 34 (265)
T 1yix_A 1 MFLVDSHCHLDGLDYESLHKDVDDVLAKAAA---RDV 34 (265)
T ss_dssp CCEEEEEECGGGSCTTTTCSSHHHHHHHHHH---TTE
T ss_pred CcEEEEeeCCCchhhcccccCHHHHHHHHHH---CCC
Confidence 5679999999853 357788877774 565
No 32
>1xwy_A DNAse TATD, deoxyribonuclease TATD; TIM barrael, zinc ION, structural genomics, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.1.9.12
Probab=30.24 E-value=31 Score=27.22 Aligned_cols=29 Identities=17% Similarity=0.153 Sum_probs=19.4
Q ss_pred CCceeeccccCCC---CCHHHHHHHHHHhccCCCC
Q 028114 7 MPKVELHAHLNGS---IRDSTLLELARVLGEKGVI 38 (213)
Q Consensus 7 lPK~eLH~HL~Gs---i~~~tl~~la~~~~~~g~~ 38 (213)
||-+|-||||+-. -.++.+++-+.+ .|+.
T Consensus 3 m~~iD~H~Hl~~~~~~~~~~~~l~~~~~---~Gv~ 34 (264)
T 1xwy_A 3 YRMFDIGVNLTSSQFAKDRDDVVACAFD---AGVN 34 (264)
T ss_dssp --CEEEEECTTSGGGTTTHHHHHHHHHH---TTCC
T ss_pred CcEEEEeeCCCChhhccCHHHHHHHHHH---CCCC
Confidence 6789999999653 247777776764 6763
No 33
>2ztj_A Homocitrate synthase; (beta/alpha)8 TIM barrel, substrate complex, amino-acid BIOS lysine biosynthesis, transferase; HET: AKG; 1.80A {Thermus thermophilus} PDB: 2ztk_A* 2zyf_A* 3a9i_A*
Probab=29.73 E-value=2.6e+02 Score=23.77 Aligned_cols=86 Identities=10% Similarity=0.014 Sum_probs=54.3
Q ss_pred HHHHHhCCCeEEEEeeCcCc-c-ccCCCCHHHHHHHHHHHHHhhhhhcccccccccccccccccccccccccCCCCCC--
Q 028114 82 VEDFASENIVYLELRTTPKR-N-ESIGMSKRSYMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKNMNDACNGTRGKK-- 157 (213)
Q Consensus 82 ~~~~a~dnV~Y~Elr~~P~~-~-~~~~~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 157 (213)
++.+.+-|+..+-+..+-+. + ..-+.+.++.++.+.+.++.+++ .|
T Consensus 80 i~~a~~~g~~~v~i~~~~s~~~~~~~~~s~~e~l~~~~~~v~~ak~------------------------------~g~~ 129 (382)
T 2ztj_A 80 AKVAVETGVQGIDLLFGTSKYLRAPHGRDIPRIIEEAKEVIAYIRE------------------------------AAPH 129 (382)
T ss_dssp HHHHHHTTCSEEEEEECC--------CCCHHHHHHHHHHHHHHHHH------------------------------HCTT
T ss_pred HHHHHHcCCCEEEEEeccCHHHHHHhCCCHHHHHHHHHHHHHHHHH------------------------------cCCC
Confidence 45566679988777665332 1 13467899999999999988764 23
Q ss_pred cEEEEEEEEeCCCCHHHHHHHHHHHHhhCCCCeEEEecCCC
Q 028114 158 IYVRLLLSIDRRETTEAAMETVKLALEMRDLGVVGIDLSGN 198 (213)
Q Consensus 158 i~vrlI~~~~R~~~~~~~~~~~~~a~~~~~~~vvG~dL~G~ 198 (213)
+.+.+-+...-..+++.+.+.++.+.+. -..|.=-|.+|-
T Consensus 130 ~~v~~~~ed~~~~~~~~~~~~~~~~~~~-a~~i~l~DT~G~ 169 (382)
T 2ztj_A 130 VEVRFSAEDTFRSEEQDLLAVYEAVAPY-VDRVGLADTVGV 169 (382)
T ss_dssp SEEEEEETTTTTSCHHHHHHHHHHHGGG-CSEEEEEETTSC
T ss_pred EEEEEEEEeCCCCCHHHHHHHHHHHHHh-cCEEEecCCCCC
Confidence 5555444322235677787788777777 555555577774
No 34
>2y1h_A Putative deoxyribonuclease tatdn3; hydrolase; 2.50A {Homo sapiens}
Probab=26.00 E-value=44 Score=26.51 Aligned_cols=29 Identities=28% Similarity=0.337 Sum_probs=20.4
Q ss_pred cCCceeeccccCC---CCCHHHHHHHHHHhccCCC
Q 028114 6 SMPKVELHAHLNG---SIRDSTLLELARVLGEKGV 37 (213)
Q Consensus 6 ~lPK~eLH~HL~G---si~~~tl~~la~~~~~~g~ 37 (213)
.|+-+|-||||+- .-.++.+++-+++ .|+
T Consensus 3 ~m~~iD~H~Hl~~~~~~~~~~~~l~~~~~---~Gv 34 (272)
T 2y1h_A 3 GVGLVDCHCHLSAPDFDRDLDDVLEKAKK---ANV 34 (272)
T ss_dssp CCCEEEEEECTTSGGGTTTHHHHHHHHHH---TTE
T ss_pred CCcEEEEeeCCCchhhhcCHHHHHHHHHH---CCC
Confidence 3677999999984 3356777766664 565
No 35
>3gg7_A Uncharacterized metalloprotein; structural genomics, unknown function, plasmid, PSI-2, protein structure initiative; 1.50A {Deinococcus radiodurans} SCOP: c.1.9.0
Probab=26.00 E-value=43 Score=27.14 Aligned_cols=29 Identities=14% Similarity=0.233 Sum_probs=21.0
Q ss_pred CCceeeccccCCCCCHHHHHHHHHHhccCCCC
Q 028114 7 MPKVELHAHLNGSIRDSTLLELARVLGEKGVI 38 (213)
Q Consensus 7 lPK~eLH~HL~Gsi~~~tl~~la~~~~~~g~~ 38 (213)
|.-+|-||||+..-..+.+++-|++ .|+.
T Consensus 1 m~liDtH~HL~~~~d~~~vl~~a~~---~gV~ 29 (254)
T 3gg7_A 1 MSLIDFHVHLDLYPDPVAVARACEE---RQLT 29 (254)
T ss_dssp -CCEEEEECGGGSSSHHHHHHHHHH---TTCE
T ss_pred CceEEEeeCCCCCCCHHHHHHHHHH---CCCc
Confidence 3448999999977677777777774 5653
No 36
>3d24_B Peroxisome proliferator-activated receptor gamma coactivator 1-alpha; nuclear receptor, ligand binding domain, DNA- binding, metal-binding, nucleus; 2.11A {Homo sapiens}
Probab=24.90 E-value=8.4 Score=20.18 Aligned_cols=15 Identities=27% Similarity=0.122 Sum_probs=11.5
Q ss_pred CCceeeccccCCCCC
Q 028114 7 MPKVELHAHLNGSIR 21 (213)
Q Consensus 7 lPK~eLH~HL~Gsi~ 21 (213)
-|=.|||-||.++-.
T Consensus 8 RpCtELlKyLTs~~~ 22 (26)
T 3d24_B 8 RPCSELLKYLTTNDD 22 (26)
T ss_pred CcHHHHHHHHhcCCc
Confidence 455899999998654
No 37
>2cw6_A Hydroxymethylglutaryl-COA lyase, mitochondrial; HMG-COA lyase, ketogenic enzyme; HET: 3HG; 2.10A {Homo sapiens} PDB: 3mp3_A* 3mp4_A 3mp5_A*
Probab=23.97 E-value=2.9e+02 Score=22.39 Aligned_cols=86 Identities=16% Similarity=0.059 Sum_probs=56.6
Q ss_pred HHHHHhCCCeEEEEeeCcCc-c--ccCCCCHHHHHHHHHHHHHhhhhhcccccccccccccccccccccccccCCCCCCc
Q 028114 82 VEDFASENIVYLELRTTPKR-N--ESIGMSKRSYMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKNMNDACNGTRGKKI 158 (213)
Q Consensus 82 ~~~~a~dnV~Y~Elr~~P~~-~--~~~~~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 158 (213)
++.+.+-|+..+-+..+... + ..-+.+.++.++.+.+.++.+++ .|+
T Consensus 86 i~~a~~ag~~~v~i~~~~sd~~~~~~~~~~~~e~l~~~~~~i~~a~~------------------------------~G~ 135 (298)
T 2cw6_A 86 FEAAVAAGAKEVVIFGAASELFTKKNINCSIEESFQRFDAILKAAQS------------------------------ANI 135 (298)
T ss_dssp HHHHHHTTCSEEEEEEESCHHHHHHHHSCCHHHHHHHHHHHHHHHHH------------------------------TTC
T ss_pred HHHHHHCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH------------------------------CCC
Confidence 55566678887766554332 1 12367899999999999988764 355
Q ss_pred EEEEEEEE-------eCCCCHHHHHHHHHHHHhhCCCCeEEEecCCC
Q 028114 159 YVRLLLSI-------DRRETTEAAMETVKLALEMRDLGVVGIDLSGN 198 (213)
Q Consensus 159 ~vrlI~~~-------~R~~~~~~~~~~~~~a~~~~~~~vvG~dL~G~ 198 (213)
.++.-++. .| .+++.+.+.++.+.+..-..|.=-|.+|-
T Consensus 136 ~v~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~Ga~~i~l~DT~G~ 181 (298)
T 2cw6_A 136 SVRGYVSCALGCPYEGK-ISPAKVAEVTKKFYSMGCYEISLGDTIGV 181 (298)
T ss_dssp EEEEEEETTTCBTTTBS-CCHHHHHHHHHHHHHTTCSEEEEEETTSC
T ss_pred eEEEEEEEEeeCCcCCC-CCHHHHHHHHHHHHHcCCCEEEecCCCCC
Confidence 55544332 24 57888888888887765555555577764
No 38
>3mkv_A Putative amidohydrolase; sargasso SEA, structural genomics, protein structure initiat NEW YORK structural genomix research consortium, nysgxrc; HET: KCX; 2.40A {Undefined}
Probab=21.97 E-value=22 Score=28.42 Aligned_cols=14 Identities=36% Similarity=0.674 Sum_probs=11.4
Q ss_pred CCc-eeeccccCCCC
Q 028114 7 MPK-VELHAHLNGSI 20 (213)
Q Consensus 7 lPK-~eLH~HL~Gsi 20 (213)
+|- +|.|+|+.++-
T Consensus 58 ~PGfID~H~H~~~~~ 72 (426)
T 3mkv_A 58 MPGLIDLHVHVVAIE 72 (426)
T ss_dssp EECEEEEEECTTCCS
T ss_pred EeChhhhhhCccccc
Confidence 677 99999997653
No 39
>3mtw_A L-arginine carboxypeptidase CC2672; hydrolase; HET: KCX M3R; 1.70A {Caulobacter vibrioides}
Probab=21.81 E-value=22 Score=28.27 Aligned_cols=14 Identities=29% Similarity=0.802 Sum_probs=11.4
Q ss_pred CCc-eeeccccCCCC
Q 028114 7 MPK-VELHAHLNGSI 20 (213)
Q Consensus 7 lPK-~eLH~HL~Gsi 20 (213)
||- +|.|+|+.+..
T Consensus 57 ~PG~ID~H~H~~~~~ 71 (403)
T 3mtw_A 57 LPGLIDMHVHLDSLA 71 (403)
T ss_dssp EECEEEEEECTTCCT
T ss_pred EeChheeeeCCcccc
Confidence 677 99999997654
No 40
>2f6k_A Metal-dependent hydrolase; metal dependent hydrolyse, aminohydro_2, ACMDS, ACMS, trypto metabolism, quinolinic acid, QUIN; 2.50A {Lactobacillus plantarum} SCOP: c.1.9.15
Probab=21.71 E-value=46 Score=26.68 Aligned_cols=12 Identities=33% Similarity=0.659 Sum_probs=9.4
Q ss_pred CCceeeccccCC
Q 028114 7 MPKVELHAHLNG 18 (213)
Q Consensus 7 lPK~eLH~HL~G 18 (213)
|+.+|.|+|+..
T Consensus 1 m~~ID~H~H~~~ 12 (307)
T 2f6k_A 1 MSKIDFHTHYLP 12 (307)
T ss_dssp -CEEEEEEECCC
T ss_pred CCeEEEecCcCC
Confidence 578999999864
No 41
>1yqh_A DUF77, IG hypothetical 16092; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.70A {Bacillus cereus atcc 14579} SCOP: d.58.48.1
Probab=21.42 E-value=2.1e+02 Score=19.93 Aligned_cols=48 Identities=15% Similarity=0.208 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHhCCCeEEEEeeCcCccccCCCCHHHHHHHHHHHHHhh
Q 028114 72 ATVTRITQEVVEDFASENIVYLELRTTPKRNESIGMSKRSYMDAVVEGLRAV 123 (213)
Q Consensus 72 ~~~~~~~~~~~~~~a~dnV~Y~Elr~~P~~~~~~~~~~~~~l~~v~~~~~~~ 123 (213)
+.+..++.++++-..+.|+.| +++|..-.-.| +.+++++.+.+..+..
T Consensus 21 ~svs~~Va~~i~vl~~sGl~y---~~~pmgT~IEG-e~devm~vv~~~~e~~ 68 (109)
T 1yqh_A 21 KDVYSVVDKAIEVVQQSGVRY---EVGAMETTLEG-ELDVLLDVVKRAQQAC 68 (109)
T ss_dssp SCHHHHHHHHHHHHHHSCSEE---EECSSCEEEEE-CHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHcCCCe---EecCCccEEEc-CHHHHHHHHHHHHHHH
Confidence 356788888888888999999 67887655456 6888888887776654
No 42
>2vhl_A N-acetylglucosamine-6-phosphate deacetylase; N- acetyleglucosamine-6-phosphate, carbohydrate metabolism, hydrolase; HET: GLP PGE; 2.05A {Bacillus subtilis}
Probab=21.38 E-value=35 Score=28.53 Aligned_cols=32 Identities=28% Similarity=0.344 Sum_probs=21.3
Q ss_pred CCc-eeeccccCCC-----CCHHHHHHHHHHhccCCCC
Q 028114 7 MPK-VELHAHLNGS-----IRDSTLLELARVLGEKGVI 38 (213)
Q Consensus 7 lPK-~eLH~HL~Gs-----i~~~tl~~la~~~~~~g~~ 38 (213)
||- +|.|+|+.++ .+++.+...++...+.|+.
T Consensus 56 ~PGlID~H~H~~~~~~~~~~~~e~~~~~~~~~l~~GvT 93 (396)
T 2vhl_A 56 LPGMIDIHIHGGYGADTMDASFSTLDIMSSRLPEEGTT 93 (396)
T ss_dssp EECEEEEEECEETTEEGGGCSHHHHHHHHHHGGGGTEE
T ss_pred cCCEEEEeecCCcCccccCCCHHHHHHHHHHHHcCCee
Confidence 677 9999999753 5777765444443345654
No 43
>1va6_A Glutamate--cysteine ligase; glutathione homeostasis, beta barrel, peptide synthesis, transition state analogue; HET: P2S ADP P6G; 2.10A {Escherichia coli} SCOP: d.128.1.4 PDB: 1v4g_A* 2d32_A* 2d33_A*
Probab=21.34 E-value=71 Score=28.88 Aligned_cols=39 Identities=18% Similarity=0.343 Sum_probs=24.3
Q ss_pred HHHHHHhCCCeEEEEeeC-cCccccCCCCHH--HHHHHHHHH
Q 028114 81 VVEDFASENIVYLELRTT-PKRNESIGMSKR--SYMDAVVEG 119 (213)
Q Consensus 81 ~~~~~a~dnV~Y~Elr~~-P~~~~~~~~~~~--~~l~~v~~~ 119 (213)
-++.+.+.||-|+|+|.. ......-|++.. ..+++++--
T Consensus 315 ~~~aL~~~Gi~yIEvR~~DvnPf~~~Gi~~~~~~fl~~fl~~ 356 (518)
T 1va6_A 315 PSDALLRGGIEYIEVRSLDINPFSPIGVDEQQVRFLDLFMVW 356 (518)
T ss_dssp HHHHHHHHCCCEEEEEEEECCTTSTTSCCHHHHHHHHHHHHH
T ss_pred cHHHHHhCCCCeEEEEeccCCCCccccccHHHHHHHHHHHHH
Confidence 578889999999999965 222233456543 344444433
No 44
>2ffi_A 2-pyrone-4,6-dicarboxylic acid hydrolase, putativ; TIM-barrel protein., structural genomics, PSI, protein struc initiative; 2.61A {Pseudomonas putida} SCOP: c.1.9.15
Probab=21.24 E-value=78 Score=25.08 Aligned_cols=29 Identities=21% Similarity=0.296 Sum_probs=20.5
Q ss_pred CCceeeccccCC---------------CCCHHHHHHHHHHhccCCCC
Q 028114 7 MPKVELHAHLNG---------------SIRDSTLLELARVLGEKGVI 38 (213)
Q Consensus 7 lPK~eLH~HL~G---------------si~~~tl~~la~~~~~~g~~ 38 (213)
++.+|-|+|+.. ..+++.+++.+.+ .|+.
T Consensus 12 ~~iID~H~Hl~~~~~~~~~~~~~~~~~~~~~~~~l~~m~~---~GV~ 55 (288)
T 2ffi_A 12 LTAIDSHAHVFSRGLNLASQRRYAPNYDAPLGDYLGQLRA---HGFS 55 (288)
T ss_dssp CCCEEBCCCCBCHHHHHHTTCCSSCCSCBCHHHHHHHHHH---TSCC
T ss_pred CCceeecccccCCCCCCCCcccCCCCCCCCHHHHHHHHHH---hCCC
Confidence 446999999975 3567778777764 5653
No 45
>2ibo_A Hypothetical protein SP2199; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.80A {Streptococcus pneumoniae TIGR4} SCOP: d.58.48.1
Probab=20.06 E-value=2.2e+02 Score=19.62 Aligned_cols=49 Identities=14% Similarity=0.183 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHhCCCeEEEEeeCcCccccCCCCHHHHHHHHHHHHHhh
Q 028114 71 HATVTRITQEVVEDFASENIVYLELRTTPKRNESIGMSKRSYMDAVVEGLRAV 123 (213)
Q Consensus 71 ~~~~~~~~~~~~~~~a~dnV~Y~Elr~~P~~~~~~~~~~~~~l~~v~~~~~~~ 123 (213)
.+.+..++.++++-..+.|+.| +++|..-.-.| +.+++++.+.+..+..
T Consensus 15 ~~svs~~Va~~i~vl~~sGl~y---~~~pmgT~IEG-e~devm~vv~~~~e~~ 63 (104)
T 2ibo_A 15 GIDRIAVIDQVIAYLQTQEVTM---VVTPFETVLEG-EFDELMRILKEALEVA 63 (104)
T ss_dssp SHHHHHHHHHHHHHHHHSSSEE---EECSSCEEEEE-EHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHcCCCe---EecCCccEEEc-CHHHHHHHHHHHHHHH
Confidence 3578889999999999999999 67887755455 6888888887777655
Done!