BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028115
(213 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4F3Y|A Chain A, X-Ray Crystal Structure Of Dihydrodipicolinate Reductase
From Burkholderia Thailandensis
pdb|4F3Y|B Chain B, X-Ray Crystal Structure Of Dihydrodipicolinate Reductase
From Burkholderia Thailandensis
Length = 272
Score = 34.7 bits (78), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 47/99 (47%), Gaps = 5/99 (5%)
Query: 62 VVDYTVPAAVNGNAELYSKVGVPFVMGTTG-GDRVRLHETIENSNVYAVISPQMGKQVVA 120
++D+T+P + + + V V+GTTG + + + V S M V
Sbjct: 77 LIDFTLPEGTLVHLDAALRHDVKLVIGTTGFSEPQKAQLRAAGEKIALVFSANMSVGVNV 136
Query: 121 FLAAMEIMAEQFPGAFSGYSLQVLESHQAGKLDT-SGTA 158
+ +E A+QF GY ++++E+H K+D SGTA
Sbjct: 137 TMKLLEFAAKQFA---QGYDIEIIEAHHRHKVDAPSGTA 172
>pdb|1C3V|A Chain A, Dihydrodipicolinate Reductase From Mycobacterium
Tuberculosis Complexed With Nadph And Pdc
pdb|1C3V|B Chain B, Dihydrodipicolinate Reductase From Mycobacterium
Tuberculosis Complexed With Nadph And Pdc
pdb|1P9L|A Chain A, Structure Of M. Tuberculosis Dihydrodipicolinate Reductase
In Complex With Nadh And 2,6 Pdc
pdb|1P9L|B Chain B, Structure Of M. Tuberculosis Dihydrodipicolinate Reductase
In Complex With Nadh And 2,6 Pdc
Length = 245
Score = 34.3 bits (77), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 44/103 (42%), Gaps = 11/103 (10%)
Query: 61 IVVDYTVPAAVNGNAELYSKVGVPFVMGTTGGDRVRLHET----IENSNVYAVISPQMGK 116
+V+D+T P V GN E G+ V+GTTG R + + N +I+P
Sbjct: 48 VVIDFTHPDVVMGNLEFLIDNGIHAVVGTTGFTAERFQQVESWLVAKPNTSVLIAPNFAI 107
Query: 117 QVVAFLAAMEIMAEQFPGAFSGYSLQVLESHQAGKLDT-SGTA 158
V + + A F A +V+E H K D SGTA
Sbjct: 108 GAVLSMHFAKQAARFFDSA------EVIELHHPHKADAPSGTA 144
>pdb|1YL6|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis
Dihydrodipicolinate Reductase (Rv2773c) (Crystal Form B)
pdb|1YL6|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis
Dihydrodipicolinate Reductase (Rv2773c) (Crystal Form B)
pdb|1YL7|A Chain A, The Crystal Structure Of Mycobacterium Tuberculosis
Dihydrodipicolinate Reductase (Rv2773c) In Complex With
Nadh (Crystal Form C)
pdb|1YL7|B Chain B, The Crystal Structure Of Mycobacterium Tuberculosis
Dihydrodipicolinate Reductase (Rv2773c) In Complex With
Nadh (Crystal Form C)
pdb|1YL7|C Chain C, The Crystal Structure Of Mycobacterium Tuberculosis
Dihydrodipicolinate Reductase (Rv2773c) In Complex With
Nadh (Crystal Form C)
pdb|1YL7|D Chain D, The Crystal Structure Of Mycobacterium Tuberculosis
Dihydrodipicolinate Reductase (Rv2773c) In Complex With
Nadh (Crystal Form C)
pdb|1YL7|E Chain E, The Crystal Structure Of Mycobacterium Tuberculosis
Dihydrodipicolinate Reductase (Rv2773c) In Complex With
Nadh (Crystal Form C)
pdb|1YL7|F Chain F, The Crystal Structure Of Mycobacterium Tuberculosis
Dihydrodipicolinate Reductase (Rv2773c) In Complex With
Nadh (Crystal Form C)
pdb|1YL7|G Chain G, The Crystal Structure Of Mycobacterium Tuberculosis
Dihydrodipicolinate Reductase (Rv2773c) In Complex With
Nadh (Crystal Form C)
pdb|1YL7|H Chain H, The Crystal Structure Of Mycobacterium Tuberculosis
Dihydrodipicolinate Reductase (Rv2773c) In Complex With
Nadh (Crystal Form C)
Length = 245
Score = 33.9 bits (76), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 44/103 (42%), Gaps = 11/103 (10%)
Query: 61 IVVDYTVPAAVNGNAELYSKVGVPFVMGTTGGDRVRLHET----IENSNVYAVISPQMGK 116
+V+D+T P V GN E G+ V+GTTG R + + N +I+P
Sbjct: 48 VVIDFTHPDVVMGNLEFLIDNGIHAVVGTTGFTAERFQQVESWLVAKPNTSVLIAPNFAI 107
Query: 117 QVVAFLAAMEIMAEQFPGAFSGYSLQVLESHQAGKLDT-SGTA 158
V + + A F A +V+E H K D SGTA
Sbjct: 108 GAVLSMHFAKQAARFFDSA------EVIELHHPHKADAPSGTA 144
>pdb|1YL5|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis
Dihydrodipicolinate Reductase (Rv2773c) (Crystal Form A)
pdb|1YL5|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis
Dihydrodipicolinate Reductase (Rv2773c) (Crystal Form A)
Length = 247
Score = 33.9 bits (76), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 44/103 (42%), Gaps = 11/103 (10%)
Query: 61 IVVDYTVPAAVNGNAELYSKVGVPFVMGTTGGDRVRLHET----IENSNVYAVISPQMGK 116
+V+D+T P V GN E G+ V+GTTG R + + N +I+P
Sbjct: 50 VVIDFTHPDVVMGNLEFLIDNGIHAVVGTTGFTAERFQQVESWLVAKPNTSVLIAPNFAI 109
Query: 117 QVVAFLAAMEIMAEQFPGAFSGYSLQVLESHQAGKLDT-SGTA 158
V + + A F A +V+E H K D SGTA
Sbjct: 110 GAVLSMHFAKQAARFFDSA------EVIELHHPHKADAPSGTA 146
>pdb|1VM6|A Chain A, Crystal Structure Of Dihydrodipicolinate Reductase
(Tm1520) From Thermotoga Maritima At 2.27 A Resolution
pdb|1VM6|B Chain B, Crystal Structure Of Dihydrodipicolinate Reductase
(Tm1520) From Thermotoga Maritima At 2.27 A Resolution
pdb|1VM6|C Chain C, Crystal Structure Of Dihydrodipicolinate Reductase
(Tm1520) From Thermotoga Maritima At 2.27 A Resolution
pdb|1VM6|D Chain D, Crystal Structure Of Dihydrodipicolinate Reductase
(Tm1520) From Thermotoga Maritima At 2.27 A Resolution
Length = 228
Score = 28.9 bits (63), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 34/141 (24%), Positives = 56/141 (39%), Gaps = 23/141 (16%)
Query: 61 IVVDYTVPAAVNGNAELYSKVGVPFVMGTTGGDRVRLHETIENSNVYAVISPQMGKQVVA 120
+V+D++ P A+ +L K V+GTT L E S V+ Q
Sbjct: 56 VVIDFSSPEALPKTVDLCKKYRAGLVLGTTALKEEHLQMLRELSKEVPVV------QAYN 109
Query: 121 FLAAMEIMAE---QFPGAFSGYSLQVLESHQAGKLDT-SGTAKAVISCFQKLGVSFDMDQ 176
F + ++ + + ++++E+H K D SGTA + S LG S
Sbjct: 110 FSIGINVLKRFLSELVKVLEDWDVEIVETHHRFKKDAPSGTAILLESA---LGKSV---- 162
Query: 177 IQMIRDPKQQLEMVGVPEEHL 197
P L + GVP +H+
Sbjct: 163 ------PIHSLRVGGVPGDHV 177
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.133 0.375
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,181,873
Number of Sequences: 62578
Number of extensions: 236273
Number of successful extensions: 666
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 662
Number of HSP's gapped (non-prelim): 6
length of query: 213
length of database: 14,973,337
effective HSP length: 95
effective length of query: 118
effective length of database: 9,028,427
effective search space: 1065354386
effective search space used: 1065354386
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (23.5 bits)