BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028115
(213 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O80574|DAPB1_ARATH 4-hydroxy-tetrahydrodipicolinate reductase 1, chloroplastic
OS=Arabidopsis thaliana GN=DAPB1 PE=2 SV=2
Length = 347
Score = 367 bits (943), Expect = e-101, Method: Compositional matrix adjust.
Identities = 170/213 (79%), Positives = 197/213 (92%)
Query: 1 MGKAVIKAADAAGLELVPVSFGTEEESGQKVEVCGKEIQVHGLSDRESVLASVFDKYPNM 60
MGKAVIKAAD+AG+ +VP+SFG+ E GQ+VEVCGKEI VHG ++RE VL+SVF+K+P +
Sbjct: 84 MGKAVIKAADSAGVNIVPISFGSAGEDGQRVEVCGKEITVHGPTEREKVLSSVFEKHPEL 143
Query: 61 IVVDYTVPAAVNGNAELYSKVGVPFVMGTTGGDRVRLHETIENSNVYAVISPQMGKQVVA 120
IVVDYT+P+AVN NAELYSKVGVPFVMGTTGGDR +L+ET+E + +YAVISPQMGKQVVA
Sbjct: 144 IVVDYTIPSAVNDNAELYSKVGVPFVMGTTGGDRNKLYETVEEAKIYAVISPQMGKQVVA 203
Query: 121 FLAAMEIMAEQFPGAFSGYSLQVLESHQAGKLDTSGTAKAVISCFQKLGVSFDMDQIQMI 180
FLAAMEIMAEQFPGAFSGYSL V+ESHQA KLD SGTAKAVISCFQ+LGVS+DMDQIQ+I
Sbjct: 204 FLAAMEIMAEQFPGAFSGYSLDVMESHQASKLDASGTAKAVISCFQELGVSYDMDQIQLI 263
Query: 181 RDPKQQLEMVGVPEEHLPGHAFHMYHLTSPDQT 213
RDPKQQ+EMVGVPEEH+ GHAFH+YHLTSPD+T
Sbjct: 264 RDPKQQVEMVGVPEEHISGHAFHLYHLTSPDET 296
>sp|Q8LB01|DAPB2_ARATH 4-hydroxy-tetrahydrodipicolinate reductase 2, chloroplastic
OS=Arabidopsis thaliana GN=DAPB2 PE=2 SV=1
Length = 349
Score = 367 bits (943), Expect = e-101, Method: Compositional matrix adjust.
Identities = 170/213 (79%), Positives = 197/213 (92%)
Query: 1 MGKAVIKAADAAGLELVPVSFGTEEESGQKVEVCGKEIQVHGLSDRESVLASVFDKYPNM 60
MGKAVIKAAD+AG+ +VP SFG+ EE+GQ VEVCGKEI VHG ++RE VL+SVF+KYP +
Sbjct: 86 MGKAVIKAADSAGVNIVPTSFGSVEEAGQTVEVCGKEILVHGPTEREKVLSSVFEKYPEL 145
Query: 61 IVVDYTVPAAVNGNAELYSKVGVPFVMGTTGGDRVRLHETIENSNVYAVISPQMGKQVVA 120
IVVDYT+P+AVN NAELY KVGVPFVMGTTGGDR RL++T+E S +YAVISPQMGKQVVA
Sbjct: 146 IVVDYTIPSAVNDNAELYGKVGVPFVMGTTGGDRTRLYKTVEESKIYAVISPQMGKQVVA 205
Query: 121 FLAAMEIMAEQFPGAFSGYSLQVLESHQAGKLDTSGTAKAVISCFQKLGVSFDMDQIQMI 180
FLAAMEIM+EQFPGAF+GYSL+V+ESHQA KLD SGTAKAVISCFQKLGVS+DMDQIQ+I
Sbjct: 206 FLAAMEIMSEQFPGAFAGYSLEVMESHQASKLDASGTAKAVISCFQKLGVSYDMDQIQLI 265
Query: 181 RDPKQQLEMVGVPEEHLPGHAFHMYHLTSPDQT 213
RDPKQQ+E+VGVPEEH+ GHAFH+YHLTSPD+T
Sbjct: 266 RDPKQQIEVVGVPEEHVSGHAFHLYHLTSPDKT 298
>sp|Q67W29|DAPB1_ORYSJ Probable 4-hydroxy-tetrahydrodipicolinate reductase 1,
chloroplastic OS=Oryza sativa subsp. japonica GN=DAPB1
PE=2 SV=1
Length = 343
Score = 324 bits (830), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 153/213 (71%), Positives = 183/213 (85%)
Query: 1 MGKAVIKAADAAGLELVPVSFGTEEESGQKVEVCGKEIQVHGLSDRESVLASVFDKYPNM 60
MGKAV +AA +AGL+LVPVSF E KVE+C +EI + S+ ES+L S+ YP+M
Sbjct: 80 MGKAVAEAAVSAGLQLVPVSFSAIEVPDGKVEICDREIYIRDPSEGESILPSIAKDYPDM 139
Query: 61 IVVDYTVPAAVNGNAELYSKVGVPFVMGTTGGDRVRLHETIENSNVYAVISPQMGKQVVA 120
IVVDYTVP AVN NAELY K+G+PFVMGTTGG+R LH+T+E++NVYAVISPQMGKQVVA
Sbjct: 140 IVVDYTVPDAVNANAELYCKLGLPFVMGTTGGNRQLLHKTVEDANVYAVISPQMGKQVVA 199
Query: 121 FLAAMEIMAEQFPGAFSGYSLQVLESHQAGKLDTSGTAKAVISCFQKLGVSFDMDQIQMI 180
FLAAMEIMAEQFPGAFSGY L+V+ESHQA KLD SGTAKAVISCFQKLGVSF++++++ +
Sbjct: 200 FLAAMEIMAEQFPGAFSGYKLEVMESHQATKLDISGTAKAVISCFQKLGVSFNLNEVKQV 259
Query: 181 RDPKQQLEMVGVPEEHLPGHAFHMYHLTSPDQT 213
RDP++QL +VGVPEEHL GHAFHMYHLTSPD+T
Sbjct: 260 RDPQEQLTLVGVPEEHLSGHAFHMYHLTSPDET 292
>sp|Q10P67|DAPB2_ORYSJ Probable 4-hydroxy-tetrahydrodipicolinate reductase 2,
chloroplastic OS=Oryza sativa subsp. japonica GN=DAPB2
PE=2 SV=1
Length = 325
Score = 305 bits (782), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 141/213 (66%), Positives = 181/213 (84%)
Query: 1 MGKAVIKAADAAGLELVPVSFGTEEESGQKVEVCGKEIQVHGLSDRESVLASVFDKYPNM 60
MG +V +A ++GL LVP+SF + + + V V +++++G S RE VL+SV D++P++
Sbjct: 62 MGLSVAEAVTSSGLHLVPISFSSRDTLDRTVRVGHTDVRIYGPSAREDVLSSVIDEFPDV 121
Query: 61 IVVDYTVPAAVNGNAELYSKVGVPFVMGTTGGDRVRLHETIENSNVYAVISPQMGKQVVA 120
+VVDYT P +VN NAELY K+G+PFVMGTTGGDR L++++++SN YA+ISPQMGKQVVA
Sbjct: 122 VVVDYTAPDSVNANAELYCKLGLPFVMGTTGGDRQLLYKSVQDSNNYALISPQMGKQVVA 181
Query: 121 FLAAMEIMAEQFPGAFSGYSLQVLESHQAGKLDTSGTAKAVISCFQKLGVSFDMDQIQMI 180
FLAAMEIMAEQFPGAFSGY L+VLESHQAGKLD SGTAKAVI+CF+KLGVS+DM+++ I
Sbjct: 182 FLAAMEIMAEQFPGAFSGYHLEVLESHQAGKLDISGTAKAVIACFEKLGVSYDMNRMVKI 241
Query: 181 RDPKQQLEMVGVPEEHLPGHAFHMYHLTSPDQT 213
RDP+QQLEMVGVPEEH+ GHAFH+YHLTSPD +
Sbjct: 242 RDPEQQLEMVGVPEEHIEGHAFHLYHLTSPDDS 274
>sp|Q8THP0|DAPB_METAC 4-hydroxy-tetrahydrodipicolinate reductase OS=Methanosarcina
acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 /
C2A) GN=dapB PE=3 SV=1
Length = 263
Score = 54.3 bits (129), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 68/138 (49%), Gaps = 12/138 (8%)
Query: 25 EESGQKVEVCGKEIQVHGLSDRESVLASVFDKYPNMIVVDYTVPAAVNGNAELYSKVGVP 84
+++G+ V IQ+ + D E+VL K +++D+T A NA + + GV
Sbjct: 40 KDAGEFAHVSNLGIQISDVKDLETVL----KKTQADVLIDFTAAGATIVNAPIAAGCGVN 95
Query: 85 FVMGTTG---GDRVRLHETIENSNVYAVISPQMGKQVVAFLAAMEIMAEQFPGAFSGYSL 141
++GTTG R + ETI+ + V AVISP V F + A+ S Y +
Sbjct: 96 LIIGTTGLTPEQRKVIDETIQKNKVRAVISPNYSVGVNVFFKIVREAAKY----LSDYDI 151
Query: 142 QVLESHQAGKLDT-SGTA 158
+++E+H K D SGTA
Sbjct: 152 EIIEAHHNQKKDAPSGTA 169
>sp|Q2NHW0|DAPB_METST 4-hydroxy-tetrahydrodipicolinate reductase OS=Methanosphaera
stadtmanae (strain DSM 3091) GN=dapB PE=3 SV=1
Length = 273
Score = 53.5 bits (127), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 49/170 (28%), Positives = 86/170 (50%), Gaps = 19/170 (11%)
Query: 1 MGKAVIKAADAA-------GLELVPVSFGTEEESGQKVEVCGKEIQVHGLSDRESVLASV 53
MG +IK A G+E+ P S + GQ++ + +++ G D L +
Sbjct: 13 MGSKIIKTVQAQDNMEVVMGIEM-PNSPLAGNDLGQQIGLGPMGVEIIGSQD----LKTE 67
Query: 54 FDKYPNMIVVDYTVPAAVNGNAELYSKVGVPFVMGTTGGDRVRL---HETIENSNVYAVI 110
+K ++VD+T+ A ++ ++ GV V+GTTG + +L H+ I+++++ AVI
Sbjct: 68 LEKVKPDVLVDFTIAKAAVETVKICAECGVNVVVGTTGLNDEQLDVMHKAIKDNDIKAVI 127
Query: 111 SPQMGKQVVAFLAAMEIMAEQFPGAFSGYSLQVLESHQAGKLDT-SGTAK 159
SP M V F EI+ + + Y ++++E+H K D SGTAK
Sbjct: 128 SPNMATGVNVFF---EIVGQVAKILGNEYDVEIVEAHHHNKQDAPSGTAK 174
>sp|Q3ISP9|DAPB_NATPD 4-hydroxy-tetrahydrodipicolinate reductase OS=Natronomonas
pharaonis (strain DSM 2160 / ATCC 35678) GN=dapB PE=3
SV=1
Length = 246
Score = 51.6 bits (122), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 59/120 (49%), Gaps = 11/120 (9%)
Query: 55 DKYPNMI-----VVDYTVPAAVNGNAELYSKVGVPFVMGTTGGDRVRLHETIENSNVYAV 109
+++P ++ V+D+TVP A + + + GVP+V+GTTG D + S AV
Sbjct: 46 EEFPELLDNADAVIDFTVPEATREHVQAAAAAGVPYVIGTTGFDDDGMAALRTASESTAV 105
Query: 110 I-SPQMGKQVVAFLAAMEIMAEQFPGAFSGYSLQVLESHQAGKLDT-SGTAKAVISCFQK 167
+ + + V A L +E E P Y +++ E+H GK D SGTA ++ +
Sbjct: 106 LKASNFARGVQALLRVVEAGVEALP----EYDIELTETHHNGKRDAPSGTANTILDVVDE 161
>sp|Q8PXL6|DAPB_METMA 4-hydroxy-tetrahydrodipicolinate reductase OS=Methanosarcina mazei
(strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833
/ OCM 88) GN=dapB PE=3 SV=1
Length = 263
Score = 50.8 bits (120), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 66/138 (47%), Gaps = 12/138 (8%)
Query: 25 EESGQKVEVCGKEIQVHGLSDRESVLASVFDKYPNMIVVDYTVPAAVNGNAELYSKVGVP 84
+++G+ V IQ+ + D E+VL K +++D+T A NA + + GV
Sbjct: 40 KDAGEFAHVGNLGIQISDVKDLETVL----KKTQADVLIDFTAAGATIVNAPIAAGCGVN 95
Query: 85 FVMGTTG---GDRVRLHETIENSNVYAVISPQMGKQVVAFLAAMEIMAEQFPGAFSGYSL 141
++GTTG R + E I + V AVISP V F + A+ + Y +
Sbjct: 96 LIIGTTGITSEQRAVIEEAIRKNQVRAVISPNYSVGVNVFFKIVREAAKY----LADYDI 151
Query: 142 QVLESHQAGKLDT-SGTA 158
+++E+H K D SGTA
Sbjct: 152 EIIEAHHNQKKDAPSGTA 169
>sp|Q57865|DAPB_METJA 4-hydroxy-tetrahydrodipicolinate reductase OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=dapB PE=3 SV=2
Length = 274
Score = 50.4 bits (119), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 54/102 (52%), Gaps = 8/102 (7%)
Query: 61 IVVDYTVPAAVNGNAELYSKVGVPFVMGTTG---GDRVRLHETIENSNVYAVISPQMGKQ 117
++VD+T+ A N ++ +K GV V+GTTG + + + I+ +NV AVIS
Sbjct: 75 VLVDFTIAHACVENVKIAAKNGVNLVIGTTGFTEEQKAEIEKAIKENNVAAVISQNFAIG 134
Query: 118 VVAFLAAMEIMAEQFPGAFSGYSLQVLESHQAGKLDT-SGTA 158
V F +E +A++ Y ++++E H K D SGTA
Sbjct: 135 VNIFFKTLEFLAKK----LGDYDIEIIEMHHRYKKDAPSGTA 172
>sp|Q6LYR5|DAPB_METMP 4-hydroxy-tetrahydrodipicolinate reductase OS=Methanococcus
maripaludis (strain S2 / LL) GN=dapB PE=3 SV=1
Length = 270
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 50/165 (30%), Positives = 77/165 (46%), Gaps = 12/165 (7%)
Query: 1 MGKAVIKA-ADAAGLELVP-VSFGTEEESGQKV-EVCGKEIQVHGLSDRESVLASVFDKY 57
MG +IK + GL++V + + GQ V E+ G LS + L +V +
Sbjct: 13 MGSGIIKTITETDGLDVVAAIDIPNHPKKGQDVGELTGLGKIGVALSTSDE-LEAVLKES 71
Query: 58 PNMIVVDYTVPAAVNGNAELYSKVGVPFVMGTTG---GDRVRLHETIENSNVYAVISPQM 114
++VD+T A A+ SK+GV V+GTTG R + + I + V A IS
Sbjct: 72 GAEVLVDFTAAAPCVQTAKTASKLGVNLVIGTTGFTPEQRAEMEDAISKNKVAATISQNY 131
Query: 115 GKQVVAFLAAMEIMAEQFPGAFSGYSLQVLESHQAGKLDT-SGTA 158
V F +E++A++ Y +++LE H K D SGTA
Sbjct: 132 AVGVNIFFKTLELLAQK----LGDYDIEILEMHHKFKKDAPSGTA 172
>sp|A9AB21|DAPB_METM6 4-hydroxy-tetrahydrodipicolinate reductase OS=Methanococcus
maripaludis (strain C6 / ATCC BAA-1332) GN=dapB PE=3
SV=1
Length = 270
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 54/113 (47%), Gaps = 8/113 (7%)
Query: 50 LASVFDKYPNMIVVDYTVPAAVNGNAELYSKVGVPFVMGTTG---GDRVRLHETIENSNV 106
L V + ++VD+T A A+ SK+GV V+GTTG R + + I + V
Sbjct: 64 LEDVLKESGAEVLVDFTAAAPCVNTAKTASKLGVNLVIGTTGFTPEQRAEMEKAISENKV 123
Query: 107 YAVISPQMGKQVVAFLAAMEIMAEQFPGAFSGYSLQVLESHQAGKLDT-SGTA 158
A IS V F +E++A++ Y +++LE H K D SGTA
Sbjct: 124 AATISQNYAVGVNIFFKTLELLAQK----LGDYDIEILEMHHKFKKDAPSGTA 172
>sp|C6BTW9|DAPB_DESAD 4-hydroxy-tetrahydrodipicolinate reductase OS=Desulfovibrio
salexigens (strain ATCC 14822 / DSM 2638 / NCIB 8403 /
VKM B-1763) GN=dapB PE=3 SV=1
Length = 260
Score = 49.7 bits (117), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 51/179 (28%), Positives = 74/179 (41%), Gaps = 21/179 (11%)
Query: 1 MGKAVIKA---ADAAGLELVPVSFGTEEESGQKVEVCGKEIQVHGLSDRESVLASVFDKY 57
MG +++ +D L V G EE VCG + Q V K
Sbjct: 13 MGDTLVRCVQQSDDLKLAAVMERSGCEEGLDSLGCVCGTDAQ------------EVLTKV 60
Query: 58 PNMIVVDYTVPAAVNGNAELYSKVGVPFVMGTTGGDRVRLHETIE-NSNVYAVISPQMGK 116
P +VVD+T PAA E+ S G P V+GTTG L + E V ++P M
Sbjct: 61 PGAVVVDFTSPAATLKLLEIASVTGNPVVIGTTGMTNEELAQVEEFAKKVPVFLAPNMSV 120
Query: 117 QVVAFLAAMEIMAEQFPGAFSGYSLQVLESHQAGKLDT-SGTAKAVISCF-QKLGVSFD 173
V L + + A Y +++ E H K+D+ SGTA + C + G+ +D
Sbjct: 121 GVNVLLKVLPELVRMLGDA---YDMEMTEIHHNKKVDSPSGTALKLAQCMAEARGLVYD 176
>sp|Q8RQN0|DAPB_COREF 4-hydroxy-tetrahydrodipicolinate reductase OS=Corynebacterium
efficiens (strain DSM 44549 / YS-314 / AJ 12310 / JCM
11189 / NBRC 100395) GN=dapB PE=3 SV=1
Length = 248
Score = 49.7 bits (117), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 65/142 (45%), Gaps = 15/142 (10%)
Query: 61 IVVDYTVPAAVNGNAELYSKVGVPFVMGTTGGDRVRLHET----IENSNVYAVISPQMGK 116
+VVD+T P AV GN E G+ V+GTTG D RL + N V +I+P
Sbjct: 50 VVVDFTTPNAVMGNLEFCINNGISAVVGTTGFDEDRLAQVRSWCASNEGVGVLIAPNFAI 109
Query: 117 QVVAFLAAMEIMAEQFPGAFSGYSLQVLESHQAGKLDT-SG----TAKAVISCFQKLGVS 171
V + + A Q F S +V+E H KLD SG TA+ + ++ G++
Sbjct: 110 SAVLTM----VFARQAARFFE--SAEVIELHHPNKLDAPSGTAIHTAQGIAEARREAGMA 163
Query: 172 FDMDQIQMIRDPKQQLEMVGVP 193
D + D + ++ G+P
Sbjct: 164 AQPDATEQALDGSRGADVDGIP 185
>sp|A4FXV6|DAPB_METM5 4-hydroxy-tetrahydrodipicolinate reductase OS=Methanococcus
maripaludis (strain C5 / ATCC BAA-1333) GN=dapB PE=3
SV=1
Length = 270
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 51/102 (50%), Gaps = 8/102 (7%)
Query: 61 IVVDYTVPAAVNGNAELYSKVGVPFVMGTTG---GDRVRLHETIENSNVYAVISPQMGKQ 117
++VD+T PA A+ +K+GV V+GTTG R + I + V A IS
Sbjct: 75 VLVDFTAPAPCVNTAKTAAKLGVNLVIGTTGFTSEQRAEMENAISENKVAATISQNYAVG 134
Query: 118 VVAFLAAMEIMAEQFPGAFSGYSLQVLESHQAGKLDT-SGTA 158
V F +E++A++ Y ++++E H K D SGTA
Sbjct: 135 VNIFFKTLELLAQK----LGDYDIELIEMHHKFKKDAPSGTA 172
>sp|Q1MRS7|DAPB_LAWIP 4-hydroxy-tetrahydrodipicolinate reductase OS=Lawsonia
intracellularis (strain PHE/MN1-00) GN=dapB PE=3 SV=1
Length = 258
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 82/178 (46%), Gaps = 33/178 (18%)
Query: 53 VFDKYPNMIVVDYTVPAAVNGNAELYSKVGVPFVMGTTGG--DRVRLHETI-ENSNVYAV 109
+F +YP +V+D+T P A++ K G P ++GTTG ++ ET+ + S ++
Sbjct: 56 IFSRYPQAVVIDFTTPETSISMAQVAQKYGNPIIIGTTGFTLEQFDTLETLAKTSRIFW- 114
Query: 110 ISPQMGKQVVAFLAAMEIMAEQFPGAFSGYSLQVLESHQAGKLDT-SGTAKAV------- 161
SP M + L + MA Q G + Y+++++E H K D SGTA +
Sbjct: 115 -SPNMSIGINVLLKTLPQMA-QILG--NEYNIEIVEVHHNKKKDAPSGTAMRIAETLSTS 170
Query: 162 -------ISCFQKLGVSFDMDQ----IQMIRDPKQQLEMVGVPEEHL--PGHAFHMYH 206
++C+ + G+ + Q IQ IR ++VGV + PG + H
Sbjct: 171 RHWDLEKVACYNREGIVGERPQEQIGIQTIRGG----DVVGVHTIYFIGPGERIEITH 224
>sp|A6UNQ4|DAPB_METVS 4-hydroxy-tetrahydrodipicolinate reductase OS=Methanococcus
vannielii (strain SB / ATCC 35089 / DSM 1224) GN=dapB
PE=3 SV=1
Length = 270
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 56/113 (49%), Gaps = 8/113 (7%)
Query: 50 LASVFDKYPNMIVVDYTVPAAVNGNAELYSKVGVPFVMGTTGGDRVR---LHETIENSNV 106
L SV ++VD+T PA A++ SK GV V+GTTG + + + + I + V
Sbjct: 64 LESVLKSSGAEVLVDFTAPAPCVNTAKIASKCGVNLVIGTTGFTKEQKDEMEKAIFENKV 123
Query: 107 YAVISPQMGKQVVAFLAAMEIMAEQFPGAFSGYSLQVLESHQAGKLDT-SGTA 158
A IS V F +E++A++ Y ++++E H K D SGTA
Sbjct: 124 AATISQNYAVGVNIFFKTLELLAQK----LGEYDIEIVEMHHKFKKDAPSGTA 172
>sp|P40110|DAPB_CORGL 4-hydroxy-tetrahydrodipicolinate reductase OS=Corynebacterium
glutamicum (strain ATCC 13032 / DSM 20300 / JCM 1318 /
LMG 3730 / NCIMB 10025) GN=dapB PE=3 SV=2
Length = 248
Score = 48.9 bits (115), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 48/162 (29%), Positives = 72/162 (44%), Gaps = 22/162 (13%)
Query: 61 IVVDYTVPAAVNGNAELYSKVGVPFVMGTTGGDRVRLHETIE----NSNVYAVISPQMGK 116
+VVD+T P AV GN E G+ V+GTTG D RL + + NV +I+P
Sbjct: 50 VVVDFTTPNAVMGNLEFCINNGISAVVGTTGFDDARLEQVRDWLEGKDNVGVLIAPNFAI 109
Query: 117 QVVAFLAAMEIMAEQFPGAFSGYSLQVLESHQAGKLDT-SG----TAKAVISCFQKLGVS 171
V + + A F A +V+E H KLD SG TA+ + + ++ G+
Sbjct: 110 SAVLTMVFSKQAARFFESA------EVIELHHPNKLDAPSGTAIHTAQGIAAARKEAGMD 163
Query: 172 FDMDQIQMIRDPKQQLE-MVGVPEEHLPGHAFHMYHLTSPDQ 212
D + Q LE G + +P HA M + + +Q
Sbjct: 164 AQPDATE------QALEGSRGASVDGIPVHAVRMSGMVAHEQ 199
>sp|Q88W01|DAPB_LACPL 4-hydroxy-tetrahydrodipicolinate reductase OS=Lactobacillus
plantarum (strain ATCC BAA-793 / NCIMB 8826 / WCFS1)
GN=dapB PE=3 SV=1
Length = 261
Score = 48.5 bits (114), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 72/145 (49%), Gaps = 28/145 (19%)
Query: 61 IVVDYTVPAAVNGNAELYSKVGVPFVMGTTG--GDRV-RLHETIENSNVYAVISPQMGKQ 117
+ +D+T+P AV NA+ G+ V+GTTG ++V L + ++ V +I+P G
Sbjct: 68 VWIDFTIPTAVYENAKFALNHGISPVIGTTGMTDEQVAELQKLAKDKQVGGLIAPNFGIS 127
Query: 118 VVAFLAAMEIMAEQFPGAFSGYSLQVLESHQAGKLDT-SGTAKAVISCFQKLGVSFDMDQ 176
V + + A+ FP ++++E H K+D+ SGTA IS +K
Sbjct: 128 AVLLMQFAQQAAKYFP------DVEIIEMHHDDKIDSPSGTA---ISTAKK--------- 169
Query: 177 IQMIRDPKQQLEMVGVPE--EHLPG 199
I +R PK+Q G P+ E LPG
Sbjct: 170 IAEVRQPKEQ----GNPDATETLPG 190
>sp|B7KBV6|DAPB_CYAP7 4-hydroxy-tetrahydrodipicolinate reductase OS=Cyanothece sp.
(strain PCC 7424) GN=dapB PE=3 SV=1
Length = 275
Score = 48.5 bits (114), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 63/218 (28%), Positives = 103/218 (47%), Gaps = 29/218 (13%)
Query: 1 MGKAVIKAADAA-------GLELVPVSFGTEEESGQKVEVCGKEIQVHGLSDRESVLASV 53
MGK VIKA A ++L P G E++G+ V CG ++V L D +SVL
Sbjct: 18 MGKEVIKAVSQAEDMMLVGAVDLNPKYRG--EDAGE-VAGCGP-VEVPILDDLQSVLVLA 73
Query: 54 FDKYPNMIVVDYTVPAAVNGNAELYSKVGVPFVMGTTG--GDRVR-LHETIENSNVYAVI 110
+ ++VD+T P V N GV V+GTTG G++++ L E E ++ +I
Sbjct: 74 TQEKVQGVMVDFTHPDGVYDNIRSAIAYGVRPVVGTTGLSGEQIKDLGEFAEKASTGCLI 133
Query: 111 SPQMGKQVVAFLAAMEIMAEQFPGAFSGYSLQVLESHQAGKLDT-SGTAKAVISCFQKLG 169
P ++ L + A Q+ F ++++E H K D SGTA +LG
Sbjct: 134 VPNFSIGMI-LLQQAAVQASQY---FD--HVEIIELHHNQKADAPSGTAIKTAEMLSELG 187
Query: 170 VSFD---MDQIQMIRDPKQQLEMVGVPEEHLPGHAFHM 204
SF+ +++ + IR + G+ EE++ H+ +
Sbjct: 188 KSFNPAKVEETETIRGSRG-----GITEENIHIHSVRL 220
>sp|O26891|DAPB_METTH 4-hydroxy-tetrahydrodipicolinate reductase OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=dapB PE=3 SV=1
Length = 273
Score = 48.5 bits (114), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 56/115 (48%), Gaps = 8/115 (6%)
Query: 48 SVLASVFDKYPNMIVVDYTVPAAVNGNAELYSKVGVPFVMGTTGGDRVRL---HETIENS 104
S LA + ++VD+TV +A + ++ GV V+GTTG + + IE S
Sbjct: 62 SNLADTLAETEPDVLVDFTVASAAVETIKTSTEAGVNLVVGTTGFSEEEMQTVRDCIERS 121
Query: 105 NVYAVISPQMGKQVVAFLAAMEIMAEQFPGAFSGYSLQVLESHQAGKLDT-SGTA 158
V AVI+P M V F + +A S Y ++++E+H K D SGTA
Sbjct: 122 GVRAVIAPNMAVGVNVFFKVLRDLAP----ILSDYDVEIIEAHHRHKKDAPSGTA 172
>sp|O29353|DAPB_ARCFU 4-hydroxy-tetrahydrodipicolinate reductase OS=Archaeoglobus
fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM
9628 / NBRC 100126) GN=dapB PE=3 SV=1
Length = 257
Score = 48.1 bits (113), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 88/193 (45%), Gaps = 22/193 (11%)
Query: 1 MGKAVIKAADAAGLELVPVSFGTEEESGQKVEVCGKEIQVHGLSDRESVLASVFDKYPNM 60
MG+ V+K A A GL++V +F E E+ G + G+ + + K
Sbjct: 12 MGRLVVKNAVAEGLKVVQ-AFDINEVGKDAGELAG--VGKIGVPIEDDI-----SKLDAD 63
Query: 61 IVVDYTVPAAVNGNAELYSKVGVPFVMGTTG---GDRVRLHETIENSNVYAVISPQMGKQ 117
+++D+T A NAE+ ++ GV VMGTTG DR RL E E V ++SP
Sbjct: 64 VLIDFTTAEAAMKNAEVAAEKGVRVVMGTTGFTDEDRKRLAELAE--KVPMIVSPNFSLG 121
Query: 118 VVAFLAAMEIMAEQFPGAFSGYSLQVLESHQAGKLDT-SGTAKAVISCFQKL----GVSF 172
V F +E A+ + +++E H K D+ SGTA + +K+ G+
Sbjct: 122 VNIFWKIVEYAAKM----LYEWDAEIVELHHRHKRDSPSGTALKLAEIIRKVKEEKGIEA 177
Query: 173 DMDQIQMIRDPKQ 185
D+ + P++
Sbjct: 178 DLKTCREGISPRE 190
>sp|A6VFL4|DAPB_METM7 4-hydroxy-tetrahydrodipicolinate reductase OS=Methanococcus
maripaludis (strain C7 / ATCC BAA-1331) GN=dapB PE=3
SV=1
Length = 270
Score = 48.1 bits (113), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 54/113 (47%), Gaps = 8/113 (7%)
Query: 50 LASVFDKYPNMIVVDYTVPAAVNGNAELYSKVGVPFVMGTTG---GDRVRLHETIENSNV 106
L ++ + ++VD+T A A+ +K+GV V+GTTG R + I + V
Sbjct: 64 LEAILKESGAEVLVDFTAAAPCVNTAKTAAKLGVNLVIGTTGFTPEQRAEMENAISENKV 123
Query: 107 YAVISPQMGKQVVAFLAAMEIMAEQFPGAFSGYSLQVLESHQAGKLDT-SGTA 158
A IS V F +E++A++ Y +++LE H K D SGTA
Sbjct: 124 AATISQNYAVGVNIFFKTLELLAQK----LGDYDIEILEMHHKFKKDAPSGTA 172
>sp|A2SQU7|DAPB_METLZ 4-hydroxy-tetrahydrodipicolinate reductase OS=Methanocorpusculum
labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=dapB
PE=3 SV=1
Length = 251
Score = 47.8 bits (112), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 61/122 (50%), Gaps = 10/122 (8%)
Query: 50 LASVFDKYPNMIVVDYTVPAAVNGNAELYSKVGVPFVMGTTG---GDRVRLHETIENSNV 106
LA+ D+ +++D+TV AA NA++ +K GV V+GTTG L + I+N V
Sbjct: 51 LAAFIDEVKPDVMIDFTVAAATMINAKIAAKKGVALVIGTTGFTPEQDAELLDAIKNVPV 110
Query: 107 YAVISPQMGKQVVAFLAAMEIMAEQFPGAFSGYSLQVLESHQAGKLDT-SGTAKAVISCF 165
+ +G + F + A + Y ++V+E+H K D SGTAK ++
Sbjct: 111 VKTTNFSVGVNI--FWELVRDAASR----LGDYDIEVIEAHHRYKKDAPSGTAKTILKVI 164
Query: 166 QK 167
Q+
Sbjct: 165 QE 166
>sp|Q12ZG1|DAPB_METBU 4-hydroxy-tetrahydrodipicolinate reductase OS=Methanococcoides
burtonii (strain DSM 6242) GN=dapB PE=3 SV=1
Length = 263
Score = 47.8 bits (112), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 55/113 (48%), Gaps = 8/113 (7%)
Query: 50 LASVFDKYPNMIVVDYTVPAAVNGNAELYSKVGVPFVMGTTG---GDRVRLHETIENSNV 106
+A+V + +V+D+T+ A NA + + GV ++GTTG R + I +
Sbjct: 61 MATVLKESKTNVVIDFTIAPATVANAPVVAGAGVDLIIGTTGFSDEQRATIEGAIIKNGT 120
Query: 107 YAVISPQMGKQVVAFLAAMEIMAEQFPGAFSGYSLQVLESHQAGKLDT-SGTA 158
AVISP V F ++ A+ S Y ++++E+H K D SGTA
Sbjct: 121 SAVISPNYSVGVNVFFKILQETAKY----LSEYDIEIIEAHHNQKKDAPSGTA 169
>sp|A4QEY0|DAPB_CORGB 4-hydroxy-tetrahydrodipicolinate reductase OS=Corynebacterium
glutamicum (strain R) GN=dapB PE=3 SV=1
Length = 248
Score = 47.8 bits (112), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 48/162 (29%), Positives = 71/162 (43%), Gaps = 22/162 (13%)
Query: 61 IVVDYTVPAAVNGNAELYSKVGVPFVMGTTGGDRVRLHETIE----NSNVYAVISPQMGK 116
+VVD+T P AV GN E G+ V+GTTG D RL + NV +I+P
Sbjct: 50 VVVDFTTPNAVMGNLEFCINNGISAVVGTTGFDDARLEQVRAWLEGKDNVGVLIAPNFAI 109
Query: 117 QVVAFLAAMEIMAEQFPGAFSGYSLQVLESHQAGKLDT-SG----TAKAVISCFQKLGVS 171
V + + A F A +V+E H KLD SG TA+ + + ++ G+
Sbjct: 110 SAVLTMVFSKQAARFFESA------EVIELHHPNKLDAPSGTAIHTAQGIAAARKEAGMD 163
Query: 172 FDMDQIQMIRDPKQQLE-MVGVPEEHLPGHAFHMYHLTSPDQ 212
D + Q LE G + +P HA M + + +Q
Sbjct: 164 AQPDATE------QALEGSRGASVDGIPVHAVRMSGMVAHEQ 199
>sp|Q46DC3|DAPB_METBF 4-hydroxy-tetrahydrodipicolinate reductase OS=Methanosarcina
barkeri (strain Fusaro / DSM 804) GN=dapB PE=3 SV=1
Length = 263
Score = 47.4 bits (111), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 55/113 (48%), Gaps = 8/113 (7%)
Query: 50 LASVFDKYPNMIVVDYTVPAAVNGNAELYSKVGVPFVMGTTG---GDRVRLHETIENSNV 106
L +V + +++D+T A NA + ++ GV ++GTTG R + E I+ V
Sbjct: 61 LETVLKESKADVLIDFTAAGATVVNAPIAARAGVNLIIGTTGLTPEQRAVIDEAIQEGQV 120
Query: 107 YAVISPQMGKQVVAFLAAMEIMAEQFPGAFSGYSLQVLESHQAGKLDT-SGTA 158
AVISP V F + A+ + Y ++++E+H K D SGTA
Sbjct: 121 SAVISPNYSVGVNVFFKIIREAAKY----LADYDIEIIEAHHNQKKDAPSGTA 169
>sp|Q82WP9|DAPB_NITEU 4-hydroxy-tetrahydrodipicolinate reductase OS=Nitrosomonas europaea
(strain ATCC 19718 / NBRC 14298) GN=dapB PE=3 SV=1
Length = 268
Score = 47.0 bits (110), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 53/101 (52%), Gaps = 7/101 (6%)
Query: 61 IVVDYTVPAAVNGNAELYSKVGVPFVMGTTGGDRVRLHETIENS--NVYAVISPQMGKQV 118
I+VD+T PA + K+GV V+GTTG + I N+ ++ V++P M V
Sbjct: 72 ILVDFTRPAGTLSHLATCRKLGVRMVIGTTGFSPEE-KDIIRNAAQDIAIVLAPNMSVGV 130
Query: 119 VAFLAAMEIMAEQFPGAFSGYSLQVLESHQAGKLDT-SGTA 158
+E+ A+ P GY ++++E+H K+D SGTA
Sbjct: 131 NLLFRLLEVAAKALP---EGYDVEIIEAHHRHKVDAPSGTA 168
>sp|Q8DHH2|DAPB_THEEB 4-hydroxy-tetrahydrodipicolinate reductase OS=Thermosynechococcus
elongatus (strain BP-1) GN=dapB PE=3 SV=1
Length = 276
Score = 47.0 bits (110), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 55/185 (29%), Positives = 91/185 (49%), Gaps = 15/185 (8%)
Query: 1 MGKAVIKAADAAGLELVPVSFGTE---EESGQKVEVCGKEIQVHGLSDRESVLASVFDKY 57
MG+ V+KA A + + + E+ G+ + + EI + G S +E +A+ +K
Sbjct: 21 MGREVVKAVHQAPDTALYAAVDRKQVGEDIGEALGLGTLEIPISG-SLQEVCVAAAQEKQ 79
Query: 58 PNMIVVDYTVPAAVNGNAELYSKVGVPFVMGTTGGDRVRLHETIE---NSNVYAVISPQM 114
P +++VD+T P AV N + GV V+GTTG ++ E E +++ AVI+P
Sbjct: 80 P-VVMVDFTHPQAVYENVRMAIAYGVYPVVGTTGLSPEQIEELAEFADKADMGAVIAPNF 138
Query: 115 GKQVVAFLAAMEIMAEQFPGAFSGYSLQVLESHQAGKLDT-SGTAKAVISCFQKLGVSFD 173
+V L I A Q+ F ++++E H K D SGTA +LG +F+
Sbjct: 139 SIGMV-LLQEAAIRASQY---FD--HVEIIELHHNQKADAPSGTALQTAQRLAELGKTFN 192
Query: 174 MDQIQ 178
Q+Q
Sbjct: 193 PPQVQ 197
>sp|Q7UJD7|DAPB_RHOBA 4-hydroxy-tetrahydrodipicolinate reductase OS=Rhodopirellula
baltica (strain SH1) GN=dapB PE=3 SV=1
Length = 280
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 57/110 (51%), Gaps = 10/110 (9%)
Query: 55 DKYPNMIVVDYTVPAAVNGNAELYSKVGVPFVMGTTG-GDRVRLHETIENSNVYAVISPQ 113
D N V+D+++P A++G E KVG P V+ TTG D + + + +++ V +P
Sbjct: 73 DAATNQAVIDFSLPEAIDGCVEHCVKVGSPLVVATTGLSDEQKQNLSEAAASIPVVWAPS 132
Query: 114 MGKQVVAFLAAMEIMAEQFPGAF----SGYSLQVLESHQAGKLDT-SGTA 158
M +A +M+I AEQ A G +++LE H K D SGTA
Sbjct: 133 MS---LAVNLSMKI-AEQITAALKDVAGGLDVEILERHHRFKADAPSGTA 178
>sp|Q0AXH2|DAPB_SYNWW 4-hydroxy-tetrahydrodipicolinate reductase OS=Syntrophomonas wolfei
subsp. wolfei (strain Goettingen) GN=dapB PE=3 SV=1
Length = 266
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/162 (29%), Positives = 78/162 (48%), Gaps = 13/162 (8%)
Query: 1 MGKAVIKAADAAGLELVPVSFGTEEESGQKVEVCGKEIQVHGLS-DRESVLASVFDKYPN 59
MGK +KA A EL ++ + G+KV I + GL E+ L V + Y
Sbjct: 16 MGKETLKAI-AGDEELELIAAVDIKAKGEKV---ADLIGIAGLDISLENDLDEVLENYQP 71
Query: 60 MIVVDYTVPAAVNGNAELYSKVGVPFVMGTTGGDRVRLHETIENSNVYAVISPQMGKQVV 119
++VD+T P AV NA K+GV V+GTTG + + + E + + Q+G ++
Sbjct: 72 DVLVDFTNPQAVFNNARSALKIGVFCVIGTTGLNEIEIKELEKLAG-----EKQVGVAII 126
Query: 120 AFLAAMEIMAEQFPGAFSGY--SLQVLESHQAGKLDT-SGTA 158
A ++ +F + Y ++++E H K+D SGTA
Sbjct: 127 PNFAIGAVLMMKFASEAAKYFPEVEIIELHHDQKMDAPSGTA 168
>sp|Q8TVG7|DAPB_METKA 4-hydroxy-tetrahydrodipicolinate reductase OS=Methanopyrus kandleri
(strain AV19 / DSM 6324 / JCM 9639 / NBRC 100938)
GN=dapB PE=3 SV=1
Length = 275
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 58/121 (47%), Gaps = 13/121 (10%)
Query: 57 YPNM-----IVVDYTVPAAVNGNAELYSKVGVPFVMGTTGGD----RVRLHETIENSNVY 107
PN+ + +D+TV A NA ++ G+ V+GTTG RV HE IE + V
Sbjct: 64 LPNIAKDADVAIDFTVREATLENAPKAARAGLDLVIGTTGFSDEDLRVLEHE-IEEAGVS 122
Query: 108 AVISPQMGKQVVAFLAAMEIMAEQFPGAFSGYSLQVLESHQAGKLDT-SGTAKAVISCFQ 166
AVISP M V +A +G+ +++E H K+D SGTA + + +
Sbjct: 123 AVISPNMSLGVNLLFELTRQLARVL--GDNGFDFEIVEIHHRHKVDAPSGTALELAAIIE 180
Query: 167 K 167
+
Sbjct: 181 E 181
>sp|Q5V5D5|DAPB_HALMA 4-hydroxy-tetrahydrodipicolinate reductase OS=Haloarcula
marismortui (strain ATCC 43049 / DSM 3752 / JCM 8966 /
VKM B-1809) GN=dapB PE=3 SV=1
Length = 249
Score = 45.4 bits (106), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 58/121 (47%), Gaps = 10/121 (8%)
Query: 51 ASVFDKYPNMIVVDYTVPAAVNGNAELYSKVGVPFVMGTTGGDR---VRLHETIENSNVY 107
A+ +Y +VVD+ VP AE + GVP V+GTTG D RL + E +
Sbjct: 50 AAALREYDVDVVVDFAVPKGALTVAEACVEAGVPMVVGTTGFDEDGLARLQDASEEIPLL 109
Query: 108 AVISPQMGKQVVAFLAAMEIMAEQFPGAFSGYSLQVLESHQAGKLDT-SGTAKAVISCFQ 166
+ G QV+ L + + G Y L+++E+H K+D SGTA +++ Q
Sbjct: 110 KATNFSQGIQVLQRLISEAV------GTLDDYDLELMETHHNRKVDAPSGTASSILDVIQ 163
Query: 167 K 167
+
Sbjct: 164 E 164
>sp|A6TT16|DAPB_ALKMQ 4-hydroxy-tetrahydrodipicolinate reductase OS=Alkaliphilus
metalliredigens (strain QYMF) GN=dapB PE=3 SV=1
Length = 240
Score = 45.4 bits (106), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 59/117 (50%), Gaps = 11/117 (9%)
Query: 56 KYPNMIVVDYTVPAAVNGNAELYSKVGVPFVMGTTGGDRVRLHETIENSNVYAVISPQMG 115
K+ +++D++ P+A+ G + GVP V+GTTG ++ L E I+ + + +
Sbjct: 42 KHTPEVIIDFSHPSALEGVLDYAMAHGVPLVIGTTGFEKEHL-EAIDQAAKHIPVL---- 96
Query: 116 KQVVAFLAAMEI---MAEQFPGAFSGYS-LQVLESHQAGKLDT-SGTAKAVISCFQK 167
Q M I + EQ G + ++V+ESH K+D SG+A ++ C +K
Sbjct: 97 -QATNMSLGMNILFSLVEQVAGMLKNKADIEVIESHHNRKMDAPSGSAVTIVECIEK 152
>sp|Q4JV62|DAPB_CORJK 4-hydroxy-tetrahydrodipicolinate reductase OS=Corynebacterium
jeikeium (strain K411) GN=dapB PE=3 SV=1
Length = 257
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 46/159 (28%), Positives = 72/159 (45%), Gaps = 16/159 (10%)
Query: 61 IVVDYTVPAAVNGNAELYSKVGVPFVMGTTGGDRVRLHETIENSNVYAVISPQMGKQVVA 120
+VVD+TVP AV GN E G+ V+GTTG R ET+ + SP+ G V
Sbjct: 49 VVVDFTVPDAVMGNLEFCINNGIHAVVGTTGWTEERF-ETVRG---WLQESPETGVLVAP 104
Query: 121 FLAAMEIMAEQFPGAFSGY--SLQVLESHQAGKLDT-SG----TAKAVISCFQKLGVSFD 173
A ++ +F + + S +V+E H K+D SG TA+ + + G++
Sbjct: 105 NFAISAVLTMKFAEIAAPFFESAEVVELHHPNKVDAPSGTAVHTAEGIARARKAAGLAEQ 164
Query: 174 MDQIQMIRDPKQQLEMVGVPEEHLPGHAFHMYHLTSPDQ 212
D D + ++ GVP HA M + + +Q
Sbjct: 165 PDATTQSLDGARGADVQGVPV-----HAVRMTGMVAHEQ 198
>sp|B8J0P9|DAPB_DESDA 4-hydroxy-tetrahydrodipicolinate reductase OS=Desulfovibrio
desulfuricans (strain ATCC 27774 / DSM 6949) GN=dapB
PE=3 SV=1
Length = 259
Score = 45.1 bits (105), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 57/120 (47%), Gaps = 9/120 (7%)
Query: 50 LASVFDKYPNMIVVDYTVPAAVNGNAELYSKVGVPFVMGTTG---GDRVRLHETIENSNV 106
LA+V K P + +D+T P+ +A + G V+GTTG ++ LHE + + +
Sbjct: 54 LAAVLPKAPGAVAIDFTAPSVSLQSARAVAASGHALVIGTTGFTDAEKDELHELAKKAPI 113
Query: 107 YAVISPQMGKQVVAFLAAMEIMAEQFPGAFSGYSLQVLESHQAGKLDT-SGTAKAVISCF 165
+ + +G V+ +I+ E Y ++++E H K D+ SGTA + C
Sbjct: 114 FWASNMSIGVNVLC-----KILPELTRALGDAYDIEMVELHHNRKKDSPSGTALTLGECL 168
>sp|B1XT71|DAPB_POLNS 4-hydroxy-tetrahydrodipicolinate reductase OS=Polynucleobacter
necessarius subsp. necessarius (strain STIR1) GN=dapB
PE=3 SV=1
Length = 266
Score = 44.7 bits (104), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 62/128 (48%), Gaps = 13/128 (10%)
Query: 34 CGKEIQVHGLSDRESVLASVFDKYPNMIVVDYTVPAAVNGNAELYSKVGVPFVMGTTG-- 91
GK+ V SD VLA+ ++D+T P + + K G ++GTTG
Sbjct: 48 LGKKTGVLISSDVAQVLANA------QFLIDFTRPEGTMAHLAIAEKTGTKMIIGTTGLS 101
Query: 92 GDRVRLHETIENSNVYAVISPQMGKQVVAFLAAMEIMAEQFPGAFSGYSLQVLESHQAGK 151
D++ + + ++N+ V +P M V A +EI A+ GY ++++E+H K
Sbjct: 102 ADQIAGLKKV-SANLAIVFAPNMSVGVNATFKLLEIAAKMLS---QGYDIEIIEAHHKHK 157
Query: 152 LDT-SGTA 158
+D SGTA
Sbjct: 158 VDAPSGTA 165
>sp|Q3SJS2|DAPB_THIDA 4-hydroxy-tetrahydrodipicolinate reductase OS=Thiobacillus
denitrificans (strain ATCC 25259) GN=dapB PE=3 SV=1
Length = 267
Score = 44.7 bits (104), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 35/100 (35%), Positives = 49/100 (49%), Gaps = 5/100 (5%)
Query: 61 IVVDYTVPAAVNGNAELYSKVGVPFVMGTTGGD-RVRLHETIENSNVYAVISPQMGKQVV 119
++VD+T P A G E + GVP V+GTTG D R V V +P M V
Sbjct: 71 VLVDFTRPEATFGYLEACALDGVPVVIGTTGFDEAGRARIAAAAERVPVVFAPNMSVGVN 130
Query: 120 AFLAAMEIMAEQFPGAFSGYSLQVLESHQAGKLDT-SGTA 158
+ E+ AE GY ++++E+H K+D SGTA
Sbjct: 131 LLMKLAEVAAEVLQ---DGYDIEIIEAHHRHKVDAPSGTA 167
>sp|A7I854|DAPB_METB6 4-hydroxy-tetrahydrodipicolinate reductase OS=Methanoregula boonei
(strain 6A8) GN=dapB PE=3 SV=1
Length = 255
Score = 44.3 bits (103), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 81/173 (46%), Gaps = 28/173 (16%)
Query: 1 MGKAVIKAAD---AAGLELVPVSFGTEEESGQKVEVCGKEIQVHGLSDRESVLASVFDKY 57
+G+ V ++ D A G++L P SF E V KEI E++LAS K
Sbjct: 17 LGRMVAESQDLELAGGIDLHPGSFFGAEI------VAAKEI--------EALLAS---KK 59
Query: 58 PNMIVVDYTVPAAVNGNAELYSKVGVPFVMGTTG--GDRVRLHETIENSNVYAVISPQMG 115
P+ +++D+TV A N + ++ V ++GTTG ++ + T N +V AVIS
Sbjct: 60 PD-VLIDFTVAHAAVENVKSAARNNVALIVGTTGFTPEQREVMATAINGHVPAVISSNYS 118
Query: 116 KQVVAFLAAMEIMAEQFPGAFSGYSLQVLESHQAGKLDT-SGTAKAVISCFQK 167
V F + + Y ++V+E+H K D SGTAK ++ +
Sbjct: 119 VGVNIFWQ----LVREAGRLLKDYDIEVIEAHHRNKKDAPSGTAKTILQILDE 167
>sp|Q24UK0|DAPB_DESHY 4-hydroxy-tetrahydrodipicolinate reductase OS=Desulfitobacterium
hafniense (strain Y51) GN=dapB PE=3 SV=1
Length = 267
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 54/112 (48%), Gaps = 10/112 (8%)
Query: 61 IVVDYTVPAAVNGNAELYSKVGVPFVMGTTGGDRVRLHET---IENSNVYAVISPQMGKQ 117
I+VD+T P +V NA+ GV V+GTTG D + E ++ + V A I+P
Sbjct: 73 IMVDFTNPQSVLKNAKCALAAGVVPVLGTTGLDEADISEIRDLVDQTKVGAFIAPNFAIG 132
Query: 118 VVAFLAAMEIMAEQFPGAFSGYSLQVLESHQAGKLDT-SGTAKAVISCFQKL 168
+ + + A+ FP ++++E H KLD SGTA + ++
Sbjct: 133 AILMMRFAQEAAKYFP------HVEIIELHHDQKLDAPSGTALKTVEWISEV 178
>sp|B8FQZ3|DAPB_DESHD 4-hydroxy-tetrahydrodipicolinate reductase OS=Desulfitobacterium
hafniense (strain DCB-2 / DSM 10664) GN=dapB PE=3 SV=1
Length = 267
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 54/112 (48%), Gaps = 10/112 (8%)
Query: 61 IVVDYTVPAAVNGNAELYSKVGVPFVMGTTGGDRVRLHET---IENSNVYAVISPQMGKQ 117
I+VD+T P +V NA+ GV V+GTTG D + E ++ + V A I+P
Sbjct: 73 IMVDFTNPQSVLKNAKCALAAGVVPVLGTTGLDEADISEIRDLVDQTKVGAFIAPNFAIG 132
Query: 118 VVAFLAAMEIMAEQFPGAFSGYSLQVLESHQAGKLDT-SGTAKAVISCFQKL 168
+ + + A+ FP ++++E H KLD SGTA + ++
Sbjct: 133 AILMMRFAQEAAKYFP------HVEIIELHHDQKLDAPSGTALKTVEWISEV 178
>sp|A4IQ67|DAPB_GEOTN 4-hydroxy-tetrahydrodipicolinate reductase OS=Geobacillus
thermodenitrificans (strain NG80-2) GN=dapB PE=3 SV=1
Length = 265
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 50/102 (49%), Gaps = 10/102 (9%)
Query: 61 IVVDYTVPAAVNGNAELYSKVGVPFVMGTTG---GDRVRLHETIENSNVYAVISPQMGKQ 117
+++D T P +AEL + GV V+GTTG D RL E E + + A+I+P
Sbjct: 71 VLIDLTTPEVGKRHAELALRYGVRPVIGTTGFTPEDIERLTELAETNEIGAIIAPNFAVG 130
Query: 118 VVAFLAAMEIMAEQFPGAFSGYSLQVLESHQAGKLDT-SGTA 158
V + + A+ F ++++E H KLD SGTA
Sbjct: 131 AVLMMKFARMAAKYFT------DVEIIELHHDQKLDAPSGTA 166
>sp|Q5HWX1|DAPB_CAMJR 4-hydroxy-tetrahydrodipicolinate reductase OS=Campylobacter jejuni
(strain RM1221) GN=dapB PE=3 SV=1
Length = 242
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 68/145 (46%), Gaps = 15/145 (10%)
Query: 21 FGTEEESGQKVEVCGK---EIQVHGLSDRESVLASVFDKYPNMIVVDYTVPAAVNGNAEL 77
+G + G+++E C K + Q+ L D+ L +F+K +++D++ P+ +
Sbjct: 7 YGAKGRMGKQIEECLKSETQAQISILYDKGGNLGELFEKSD--VIIDFSSPSGTHELLNY 64
Query: 78 YSKVGVPFVMGTTGGDRVRLHETIENSNV---YAVISPQMGKQVVAFLAAMEIMAEQFPG 134
+ P V+GTTG D LH S V + + +G V+ +LA+ A Q
Sbjct: 65 ARTMPKPLVIGTTGLDEKILHLMQSASEVMPIFYATNMSLGVAVLNYLAS---KASQM-- 119
Query: 135 AFSGYSLQVLESHQAGKLDT-SGTA 158
+ +++LE H K D SGTA
Sbjct: 120 -LRNFDIEILEMHHRHKKDAPSGTA 143
>sp|A3CVI6|DAPB_METMJ 4-hydroxy-tetrahydrodipicolinate reductase OS=Methanoculleus
marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=dapB
PE=3 SV=1
Length = 252
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 68/146 (46%), Gaps = 14/146 (9%)
Query: 33 VCGKEIQVHGLSDRESVLASVFDKYPNM----IVVDYTVPAAVNGNAELYSKVGVPFVMG 88
V G +++ L E V A+ D + N +++D+TV A N + ++ GV ++G
Sbjct: 30 VGGIDVREGTLFKTEVVPAAKIDAFLNEKKPDVLIDFTVAGAAVENIKAAARNGVALIVG 89
Query: 89 TTG---GDRVRLHETIENSNVYAVISPQMGKQVVAFLAAMEIMAEQFPGAFSGYSLQVLE 145
TTG R + +E NV AVIS V F + A + Y ++V E
Sbjct: 90 TTGFSPEQRETIAAAVE-GNVPAVISSNFSVGVNIFWKLVREAARE----LGDYDVEVTE 144
Query: 146 SHQAGKLDT-SGTAKAVISCF-QKLG 169
+H K D SGTAK ++ Q+LG
Sbjct: 145 AHHRYKKDAPSGTAKTILEILDQELG 170
>sp|B1XIL4|DAPB_SYNP2 4-hydroxy-tetrahydrodipicolinate reductase OS=Synechococcus sp.
(strain ATCC 27264 / PCC 7002 / PR-6) GN=dapB PE=3 SV=1
Length = 275
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 53/189 (28%), Positives = 87/189 (46%), Gaps = 21/189 (11%)
Query: 1 MGKAVIKA-ADAAGLELV------PVSFGTEEESGQKVEVCGKEIQVHGLSDRESVLASV 53
MG+ V+KA A AA +E++ P G +++G+ + CG ++V ++D E+ L
Sbjct: 18 MGREVVKAVAGAADMEIIAAVDKNPALLG--QDAGE-IAGCGA-VEVPIVNDLEASLVMA 73
Query: 54 FDKYPNMIVVDYTVPAAVNGNAELYSKVGVPFVMGTTGGDRVR---LHETIENSNVYAVI 110
++VD+T P+ V N GV V+GTTG + L E E ++ A+I
Sbjct: 74 TQSKIQGVMVDFTHPSGVYANTRAAIAYGVRPVVGTTGLSEEQINDLKEFAEKASTGALI 133
Query: 111 SPQMGKQVVAFLAAMEIMAEQFPGAFSGYSLQVLESHQAGKLDT-SGTAKAVISCFQKLG 169
P VV A A+ F ++++E H K D SGTA +LG
Sbjct: 134 IPNFSIGVVLLQQASLQAAKYFD------HVEIIELHHNQKADAPSGTAIKTAQMLAELG 187
Query: 170 VSFDMDQIQ 178
F+ +++
Sbjct: 188 KQFNPAEVE 196
>sp|A8FJZ8|DAPB_CAMJ8 4-hydroxy-tetrahydrodipicolinate reductase OS=Campylobacter jejuni
subsp. jejuni serotype O:6 (strain 81116 / NCTC 11828)
GN=dapB PE=3 SV=1
Length = 242
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 68/145 (46%), Gaps = 15/145 (10%)
Query: 21 FGTEEESGQKVEVCGK---EIQVHGLSDRESVLASVFDKYPNMIVVDYTVPAAVNGNAEL 77
+G + G+++E C K + Q+ L D+ L +F+K +++D++ P+ +
Sbjct: 7 YGAKGRMGKQIEECLKSETQAQISILYDKGGNLEELFEKSD--VIIDFSSPSGTHELLNY 64
Query: 78 YSKVGVPFVMGTTGGDRVRLHETIENSNV---YAVISPQMGKQVVAFLAAMEIMAEQFPG 134
+ P V+GTTG D LH S V + + +G V+ +LA+ A Q
Sbjct: 65 ARTMPKPLVIGTTGLDEKILHLMQSASEVMPIFYATNMSLGVAVLNYLAS---KASQM-- 119
Query: 135 AFSGYSLQVLESHQAGKLDT-SGTA 158
+ +++LE H K D SGTA
Sbjct: 120 -LKNFDIEILEMHHRHKKDAPSGTA 143
>sp|Q5YSW2|DAPB_NOCFA 4-hydroxy-tetrahydrodipicolinate reductase OS=Nocardia farcinica
(strain IFM 10152) GN=dapB PE=3 SV=1
Length = 248
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 52/108 (48%), Gaps = 7/108 (6%)
Query: 54 FDKYPNMIVVDYTVPAAVNGNAELYSKVGVPFVMGTTGGDRVRLHETIENSNVYAVISPQ 113
F + +VVD+T P V GN + + G+ V+GTTG D RL E + SP
Sbjct: 43 FTETGTEVVVDFTHPDVVMGNLKFLVEHGIHAVVGTTGFDAARLDEV----RGWLAASPA 98
Query: 114 MGKQVVAFLAAMEIMAEQFPGAFSGY--SLQVLESHQAGKLDT-SGTA 158
G + A +++ +F + + S++V+E H K D SGTA
Sbjct: 99 TGVLIAPNFAIGAVLSMRFAEQAARFFESVEVIELHHPNKADAPSGTA 146
>sp|P72642|DAPB_SYNY3 4-hydroxy-tetrahydrodipicolinate reductase OS=Synechocystis sp.
(strain PCC 6803 / Kazusa) GN=dapB PE=3 SV=1
Length = 275
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/180 (28%), Positives = 81/180 (45%), Gaps = 13/180 (7%)
Query: 1 MGKAVIKA-ADAAGLELVPVSFGTEEESGQKV-EVCG-KEIQVHGLSDRESVLASVFDKY 57
MG+ VIKA A A L+LV GQ + EV G ++V L+D +SVL +
Sbjct: 18 MGREVIKAVAQAPDLQLVGAVDHNPSLQGQDIGEVVGIAPLEVPVLADLQSVLVLATQEK 77
Query: 58 PNMIVVDYTVPAAVNGNAELYSKVGVPFVMGTTGGDRVRLHET---IENSNVYAVISPQM 114
++VD+T P+ V N GV V+GTTG ++ + E ++ +I+P
Sbjct: 78 IQGVMVDFTHPSGVYDNVRSAIAYGVRPVVGTTGLSEQQIQDLGDFAEKASTGCLIAPNF 137
Query: 115 GKQVVAFLAAMEIMAEQFPGAFSGYSLQVLESHQAGKLDT-SGTAKAVISCFQKLGVSFD 173
V+ A + F ++++E H K D SGTA ++G +F+
Sbjct: 138 AIGVLLMQQAAVQACQYFD------HVEIIELHHNQKADAPSGTAIKTAQMLAEMGKTFN 191
>sp|Q0AER1|DAPB_NITEC 4-hydroxy-tetrahydrodipicolinate reductase OS=Nitrosomonas eutropha
(strain C91) GN=dapB PE=3 SV=1
Length = 268
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 55/102 (53%), Gaps = 9/102 (8%)
Query: 61 IVVDYTVPAAVNGNAELYSKVGVPFVMGTTG---GDRVRLHETIENSNVYAVISPQMGKQ 117
+++D+T PA + + + G+ V+GTTG ++ +H+ + ++ V +P M
Sbjct: 72 VLIDFTRPAGTLTHLAVCRQSGIHMVIGTTGFSAEEKEIIHDAAK--DIAIVFAPNMSVG 129
Query: 118 VVAFLAAMEIMAEQFPGAFSGYSLQVLESHQAGKLDT-SGTA 158
V +E+ A+ P +GY ++++E+H K+D SGTA
Sbjct: 130 VNILFRLLEVAAKALP---AGYDVEIIEAHHRHKVDAPSGTA 168
>sp|A5ULF7|DAPB_METS3 4-hydroxy-tetrahydrodipicolinate reductase OS=Methanobrevibacter
smithii (strain PS / ATCC 35061 / DSM 861) GN=dapB PE=3
SV=1
Length = 273
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 63/129 (48%), Gaps = 18/129 (13%)
Query: 61 IVVDYTVPAAVNGNAELYSKVGVPFVMGTTGGDRVRLHETIEN---SNVYAVISPQMGKQ 117
++VD+T+ A + + GV V+GTTG ++ E I+N ++V AVIS M
Sbjct: 75 VLVDFTIAHAAVETVKKATACGVNVVVGTTGFTDEQMAENIKNVKDNDVKAVISSNMSIG 134
Query: 118 VVAFLAAMEIMAEQFPGAFSGYSLQVLESHQAGKLDT-SGTAKAVISCFQKLGVSFDMDQ 176
V F + ++ + + ++++E+H K D SGTA ++ F+ + D
Sbjct: 135 VNVFFNTL----KKLTPILNDFDIEIIEAHHNQKKDAPSGTA---MTAFEVIANELD--- 184
Query: 177 IQMIRDPKQ 185
RDP++
Sbjct: 185 ----RDPEE 189
>sp|P24703|DAPB_COXBU 4-hydroxy-tetrahydrodipicolinate reductase OS=Coxiella burnetii
(strain RSA 493 / Nine Mile phase I) GN=dapB PE=3 SV=2
Length = 239
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 54/117 (46%), Gaps = 10/117 (8%)
Query: 46 RESVLASVFDKYPNMIVVDYTVPAAVNGNAELYSKVGVPFVMGTTG---GDRVRLHETIE 102
R+ LA +V+D+T P +V NAE+ + G V+GTTG L +
Sbjct: 36 RQDDLAKTIQTTHADVVIDFTTPQSVFHNAEIIIQSGARPVIGTTGLTLEQIALLDKQCR 95
Query: 103 NSNVYAVISPQMGKQVVAFLAAMEIMAEQFPGAFSGYSLQVLESHQAGKLDT-SGTA 158
N + A+++P V + + A FP ++++E H + K+D SGTA
Sbjct: 96 NKKLGAIVAPNFSVGAVLMMKYAKEAAHYFP------DVEIIEMHHSQKIDAPSGTA 146
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.133 0.375
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 78,041,158
Number of Sequences: 539616
Number of extensions: 3037063
Number of successful extensions: 8329
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 326
Number of HSP's that attempted gapping in prelim test: 8151
Number of HSP's gapped (non-prelim): 434
length of query: 213
length of database: 191,569,459
effective HSP length: 113
effective length of query: 100
effective length of database: 130,592,851
effective search space: 13059285100
effective search space used: 13059285100
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (27.3 bits)