Query 028115
Match_columns 213
No_of_seqs 186 out of 1232
Neff 6.1
Searched_HMMs 46136
Date Fri Mar 29 06:28:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028115.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028115hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR02130 dapB_plant dihydrodi 100.0 4.2E-57 9E-62 397.7 22.2 211 1-213 12-224 (275)
2 PLN02775 Probable dihydrodipic 100.0 8.3E-56 1.8E-60 391.0 24.1 211 1-213 23-235 (286)
3 COG0289 DapB Dihydrodipicolina 100.0 1.7E-51 3.7E-56 358.3 19.6 197 1-212 14-225 (266)
4 TIGR00036 dapB dihydrodipicoli 100.0 2.4E-43 5.3E-48 309.3 20.8 198 1-213 13-227 (266)
5 PRK00048 dihydrodipicolinate r 100.0 5.2E-41 1.1E-45 292.9 21.0 195 1-213 13-217 (257)
6 PF01113 DapB_N: Dihydrodipico 99.9 1.5E-25 3.1E-30 176.1 10.0 106 1-114 12-124 (124)
7 PF05173 DapB_C: Dihydrodipico 99.9 6.8E-22 1.5E-26 157.6 6.1 91 117-213 1-93 (132)
8 PRK08374 homoserine dehydrogen 98.4 7.3E-07 1.6E-11 81.1 6.5 67 57-124 91-160 (336)
9 PRK13303 L-aspartate dehydroge 98.3 6.8E-06 1.5E-10 72.3 11.8 108 1-118 12-125 (265)
10 PF03447 NAD_binding_3: Homose 97.7 0.00011 2.3E-09 56.4 5.6 102 1-110 5-116 (117)
11 PRK04207 glyceraldehyde-3-phos 97.3 0.00065 1.4E-08 62.0 7.3 82 1-90 12-110 (341)
12 PRK13304 L-aspartate dehydroge 97.3 0.0027 5.9E-08 55.8 10.9 108 1-118 12-126 (265)
13 PRK13302 putative L-aspartate 96.9 0.012 2.6E-07 52.0 10.6 110 1-119 17-130 (271)
14 PRK13301 putative L-aspartate 96.7 0.015 3.2E-07 51.8 10.0 105 1-117 13-125 (267)
15 PRK06270 homoserine dehydrogen 96.7 0.0089 1.9E-07 54.5 8.4 120 1-124 13-163 (341)
16 TIGR03855 NAD_NadX aspartate d 96.0 0.074 1.6E-06 46.1 10.3 98 13-120 1-104 (229)
17 COG1712 Predicted dinucleotide 95.8 0.15 3.2E-06 44.8 10.9 107 1-118 11-124 (255)
18 PF01408 GFO_IDH_MocA: Oxidore 95.7 0.046 1E-06 41.1 6.7 99 2-108 12-116 (120)
19 PF13380 CoA_binding_2: CoA bi 95.6 0.13 2.8E-06 39.7 9.2 98 2-118 16-113 (116)
20 TIGR01921 DAP-DH diaminopimela 95.5 0.13 2.7E-06 47.1 9.9 141 1-157 14-164 (324)
21 COG3804 Uncharacterized conser 95.2 0.055 1.2E-06 48.9 6.5 78 2-87 14-96 (350)
22 TIGR01019 sucCoAalpha succinyl 94.7 0.38 8.2E-06 43.2 10.6 99 2-113 19-121 (286)
23 PRK06349 homoserine dehydrogen 94.4 0.23 5E-06 46.7 8.8 113 1-122 14-140 (426)
24 PLN00125 Succinyl-CoA ligase [ 94.4 0.46 1E-05 43.0 10.4 99 3-113 26-128 (300)
25 PTZ00187 succinyl-CoA syntheta 93.7 1.1 2.3E-05 41.0 11.4 102 2-113 42-147 (317)
26 PF02629 CoA_binding: CoA bind 93.6 0.69 1.5E-05 34.2 8.4 77 2-88 15-92 (96)
27 PRK05678 succinyl-CoA syntheta 93.4 1.1 2.3E-05 40.4 10.8 97 2-113 21-123 (291)
28 PRK08300 acetaldehyde dehydrog 93.3 0.54 1.2E-05 42.6 8.7 113 1-116 15-134 (302)
29 PLN02819 lysine-ketoglutarate 93.1 2.2 4.8E-05 44.8 13.8 121 1-127 580-720 (1042)
30 TIGR03215 ac_ald_DH_ac acetald 92.9 1.7 3.7E-05 39.0 11.2 109 1-115 12-127 (285)
31 PF03435 Saccharop_dh: Sacchar 92.4 0.81 1.8E-05 41.8 8.8 112 1-118 9-128 (386)
32 PRK11579 putative oxidoreducta 92.2 1.2 2.7E-05 40.1 9.6 111 5-125 20-137 (346)
33 TIGR03450 mycothiol_INO1 inosi 92.2 1.3 2.8E-05 41.0 9.5 82 46-128 112-199 (351)
34 TIGR00715 precor6x_red precorr 91.9 1.8 4E-05 38.1 10.0 83 2-88 12-98 (256)
35 PF00107 ADH_zinc_N: Zinc-bind 90.9 0.26 5.7E-06 37.3 3.3 88 1-91 2-92 (130)
36 COG1748 LYS9 Saccharopine dehy 90.6 3.3 7.1E-05 38.9 10.8 124 2-133 13-142 (389)
37 PF01118 Semialdhyde_dh: Semia 90.6 1.6 3.5E-05 33.4 7.5 83 1-92 11-100 (121)
38 PRK05472 redox-sensing transcr 89.7 1.9 4.1E-05 36.4 7.9 108 1-123 95-204 (213)
39 PRK06392 homoserine dehydrogen 89.2 2.2 4.7E-05 38.9 8.3 117 1-122 11-152 (326)
40 COG0673 MviM Predicted dehydro 89.1 3.2 6.9E-05 36.6 9.2 116 3-125 17-140 (342)
41 PRK08057 cobalt-precorrin-6x r 88.9 4.5 9.8E-05 35.5 9.9 79 2-88 14-98 (248)
42 PF13407 Peripla_BP_4: Peripla 88.8 1.8 3.8E-05 36.2 7.0 42 50-91 48-89 (257)
43 smart00846 Gp_dh_N Glyceraldeh 88.5 2.6 5.7E-05 34.1 7.5 22 1-22 11-33 (149)
44 PRK08955 glyceraldehyde-3-phos 88.5 2.2 4.8E-05 39.2 7.9 84 1-89 13-119 (334)
45 TIGR02717 AcCoA-syn-alpha acet 86.9 6.8 0.00015 37.0 10.4 77 1-94 22-101 (447)
46 PTZ00142 6-phosphogluconate de 86.8 3.1 6.7E-05 39.8 8.1 92 1-95 12-107 (470)
47 PF13460 NAD_binding_10: NADH( 86.6 5.3 0.00012 31.7 8.3 84 1-91 10-100 (183)
48 TIGR01761 thiaz-red thiazoliny 86.0 6.9 0.00015 36.0 9.6 117 1-128 13-137 (343)
49 cd06305 PBP1_methylthioribose_ 85.7 15 0.00033 30.6 11.0 36 54-89 52-87 (273)
50 PRK14106 murD UDP-N-acetylmura 85.0 10 0.00022 35.1 10.5 112 1-121 16-148 (450)
51 COG2099 CobK Precorrin-6x redu 85.0 7.6 0.00016 34.5 9.0 42 45-87 54-98 (257)
52 TIGR01546 GAPDH-II_archae glyc 84.9 3.7 8E-05 37.7 7.3 79 1-87 9-104 (333)
53 COG2344 AT-rich DNA-binding pr 84.8 4.1 8.8E-05 35.0 6.9 83 1-91 95-179 (211)
54 PF02571 CbiJ: Precorrin-6x re 84.6 7.5 0.00016 34.1 8.9 33 54-87 63-98 (249)
55 TIGR01532 E4PD_g-proteo D-eryt 84.6 5 0.00011 36.6 8.0 89 1-92 10-123 (325)
56 cd02069 methionine_synthase_B1 84.2 12 0.00025 32.1 9.6 78 47-124 129-212 (213)
57 COG1832 Predicted CoA-binding 83.8 8.3 0.00018 31.3 8.0 49 57-106 73-121 (140)
58 PF00072 Response_reg: Respons 83.7 6.6 0.00014 28.1 7.0 70 44-114 30-102 (112)
59 COG0074 SucD Succinyl-CoA synt 83.7 11 0.00023 34.2 9.4 88 1-100 20-108 (293)
60 cd06347 PBP1_ABC_ligand_bindin 83.6 15 0.00033 31.6 10.4 53 44-97 178-231 (334)
61 cd06301 PBP1_rhizopine_binding 82.6 20 0.00043 29.9 10.5 39 50-88 49-87 (272)
62 PRK14618 NAD(P)H-dependent gly 82.2 7.4 0.00016 34.7 8.1 108 1-117 15-140 (328)
63 PF02421 FeoB_N: Ferrous iron 82.1 5.8 0.00013 32.4 6.7 69 55-123 76-154 (156)
64 PF10087 DUF2325: Uncharacteri 81.3 3.5 7.6E-05 30.5 4.7 37 57-93 48-87 (97)
65 PLN02688 pyrroline-5-carboxyla 81.1 15 0.00032 31.6 9.3 101 1-114 11-119 (266)
66 PF00044 Gp_dh_N: Glyceraldehy 80.7 5.2 0.00011 32.5 5.9 23 1-23 11-34 (151)
67 PRK06813 homoserine dehydrogen 80.6 11 0.00024 34.8 8.7 99 57-171 86-193 (346)
68 cd06346 PBP1_ABC_ligand_bindin 80.3 35 0.00075 29.6 11.5 52 44-96 179-231 (312)
69 cd06282 PBP1_GntR_like_2 Ligan 80.1 31 0.00067 28.4 10.7 38 50-88 48-85 (266)
70 PF13727 CoA_binding_3: CoA-bi 80.0 7 0.00015 30.6 6.4 78 2-86 89-172 (175)
71 PRK14046 malate--CoA ligase su 80.0 19 0.0004 33.7 10.1 71 57-127 310-387 (392)
72 PRK13535 erythrose 4-phosphate 79.9 8.7 0.00019 35.3 7.7 89 1-92 12-125 (336)
73 cd00951 KDGDH 5-dehydro-4-deox 79.8 8.5 0.00018 34.1 7.5 23 69-91 21-45 (289)
74 cd06358 PBP1_NHase Type I peri 79.7 16 0.00036 31.9 9.3 56 44-100 174-231 (333)
75 cd06348 PBP1_ABC_ligand_bindin 79.5 21 0.00046 31.3 9.9 54 43-97 178-232 (344)
76 PRK03369 murD UDP-N-acetylmura 79.1 27 0.00059 33.2 11.2 49 86-147 119-172 (488)
77 COG4091 Predicted homoserine d 79.0 5.9 0.00013 37.2 6.3 83 1-87 28-131 (438)
78 TIGR02082 metH 5-methyltetrahy 78.6 28 0.0006 37.3 11.8 81 47-127 773-859 (1178)
79 cd06355 PBP1_FmdD_like Peripla 78.5 12 0.00027 33.2 8.2 56 43-100 174-233 (348)
80 cd06267 PBP1_LacI_sugar_bindin 78.3 33 0.00072 27.8 10.2 38 52-91 50-87 (264)
81 TIGR01296 asd_B aspartate-semi 77.8 55 0.0012 29.8 12.3 109 2-123 12-137 (339)
82 cd06292 PBP1_LacI_like_10 Liga 77.6 40 0.00087 28.0 11.2 38 50-88 48-89 (273)
83 PRK05428 HPr kinase/phosphoryl 77.6 12 0.00026 34.1 7.8 94 68-163 68-168 (308)
84 cd06350 PBP1_GPCR_family_C_lik 77.4 14 0.00031 32.2 8.2 51 44-95 204-256 (348)
85 cd06312 PBP1_ABC_sugar_binding 77.4 31 0.00068 28.9 10.0 39 51-89 51-89 (271)
86 PLN02522 ATP citrate (pro-S)-l 77.4 15 0.00033 36.5 9.0 71 37-113 62-137 (608)
87 PF05368 NmrA: NmrA-like famil 77.3 14 0.00031 30.7 7.8 85 1-88 10-100 (233)
88 TIGR00978 asd_EA aspartate-sem 77.2 12 0.00027 33.9 7.9 78 1-87 12-102 (341)
89 COG0057 GapA Glyceraldehyde-3- 77.0 9.9 0.00021 35.1 7.1 127 1-132 12-168 (335)
90 PRK09287 6-phosphogluconate de 76.9 17 0.00037 34.8 9.0 23 1-24 1-23 (459)
91 PRK06928 pyrroline-5-carboxyla 76.8 29 0.00064 30.4 10.0 104 1-115 12-123 (277)
92 cd06300 PBP1_ABC_sugar_binding 76.7 37 0.0008 28.3 10.2 37 52-88 55-91 (272)
93 cd06334 PBP1_ABC_ligand_bindin 76.4 51 0.0011 29.6 11.6 47 44-91 182-229 (351)
94 PRK14874 aspartate-semialdehyd 76.4 59 0.0013 29.4 14.0 106 2-120 14-136 (334)
95 PRK03620 5-dehydro-4-deoxygluc 76.4 12 0.00027 33.3 7.5 12 151-162 142-154 (303)
96 cd06341 PBP1_ABC_ligand_bindin 76.3 50 0.0011 28.8 11.4 56 44-100 175-232 (341)
97 PRK08664 aspartate-semialdehyd 76.0 11 0.00024 34.3 7.3 82 1-91 15-109 (349)
98 cd00423 Pterin_binding Pterin 75.9 12 0.00027 32.5 7.3 49 61-113 79-128 (258)
99 PRK15404 leucine ABC transport 75.9 31 0.00068 31.1 10.2 55 44-99 203-258 (369)
100 PLN02358 glyceraldehyde-3-phos 75.8 16 0.00035 33.6 8.2 84 1-87 16-124 (338)
101 PRK06091 membrane protein FdrA 75.6 12 0.00026 36.8 7.7 68 44-114 106-175 (555)
102 PRK02472 murD UDP-N-acetylmura 75.4 43 0.00094 30.9 11.2 127 1-148 16-166 (447)
103 cd06342 PBP1_ABC_LIVBP_like Ty 75.4 35 0.00075 29.5 10.0 56 44-100 177-233 (334)
104 PRK14619 NAD(P)H-dependent gly 74.8 11 0.00024 33.4 6.9 70 1-95 15-88 (308)
105 TIGR03249 KdgD 5-dehydro-4-deo 74.8 15 0.00033 32.6 7.7 15 149-163 138-153 (296)
106 TIGR00679 hpr-ser Hpr(Ser) kin 74.7 16 0.00035 33.2 7.8 49 68-116 68-117 (304)
107 PF13458 Peripla_BP_6: Peripla 74.1 36 0.00079 29.4 9.8 58 44-102 177-237 (343)
108 PRK07535 methyltetrahydrofolat 74.0 12 0.00027 32.9 6.8 51 61-113 72-124 (261)
109 PRK10206 putative oxidoreducta 73.8 17 0.00037 32.9 7.8 107 12-126 26-138 (344)
110 PRK15425 gapA glyceraldehyde-3 72.9 18 0.00039 33.2 7.8 87 1-90 13-121 (331)
111 PRK09599 6-phosphogluconate de 72.9 43 0.00094 29.5 10.1 105 1-114 11-121 (301)
112 COG0329 DapA Dihydrodipicolina 72.7 13 0.00028 33.3 6.7 90 68-167 24-128 (299)
113 PF02593 dTMP_synthase: Thymid 72.6 52 0.0011 28.5 10.1 113 45-167 41-167 (217)
114 TIGR01692 HIBADH 3-hydroxyisob 72.5 62 0.0013 28.3 10.9 88 1-100 7-100 (288)
115 PF02603 Hpr_kinase_N: HPr Ser 72.5 4.8 0.0001 31.5 3.5 49 68-116 67-116 (127)
116 TIGR00873 gnd 6-phosphoglucona 72.3 22 0.00048 34.0 8.5 23 1-24 10-32 (467)
117 PRK07729 glyceraldehyde-3-phos 72.2 18 0.0004 33.4 7.7 88 1-92 13-122 (343)
118 COG2201 CheB Chemotaxis respon 72.0 19 0.00041 33.4 7.7 46 49-95 39-86 (350)
119 PRK00436 argC N-acetyl-gamma-g 71.8 19 0.0004 32.8 7.7 82 1-92 14-102 (343)
120 cd06360 PBP1_alkylbenzenes_lik 71.8 42 0.00092 29.0 9.7 52 43-95 175-229 (336)
121 cd06327 PBP1_SBP_like_1 Peripl 71.4 29 0.00063 30.3 8.6 56 44-101 177-235 (334)
122 PRK12938 acetyacetyl-CoA reduc 70.7 27 0.00059 28.9 7.9 74 1-93 15-92 (246)
123 PRK06476 pyrroline-5-carboxyla 70.7 35 0.00077 29.2 8.8 103 1-113 11-117 (258)
124 PRK13397 3-deoxy-7-phosphohept 70.6 23 0.00049 31.3 7.6 83 65-152 132-226 (250)
125 cd01019 ZnuA Zinc binding prot 70.5 28 0.00061 30.7 8.3 42 68-109 214-255 (286)
126 cd01537 PBP1_Repressors_Sugar_ 70.1 57 0.0012 26.4 9.9 39 50-89 48-86 (264)
127 cd06269 PBP1_glutamate_recepto 69.2 12 0.00025 31.1 5.3 49 45-94 183-234 (298)
128 PLN02725 GDP-4-keto-6-deoxyman 68.8 24 0.00052 30.2 7.4 73 1-90 9-101 (306)
129 PRK06182 short chain dehydroge 68.7 39 0.00085 28.6 8.7 68 1-92 15-84 (273)
130 cd06364 PBP1_CaSR Ligand-bindi 68.7 21 0.00045 34.2 7.6 50 44-94 231-282 (510)
131 cd06308 PBP1_sensor_kinase_lik 68.5 66 0.0014 26.8 9.9 37 53-89 52-88 (270)
132 cd01076 NAD_bind_1_Glu_DH NAD( 68.5 50 0.0011 28.4 9.2 107 1-117 42-162 (227)
133 PRK02261 methylaspartate mutas 68.2 58 0.0013 25.8 11.5 67 50-117 47-124 (137)
134 PF01297 TroA: Periplasmic sol 68.2 15 0.00032 31.5 5.9 48 67-114 184-231 (256)
135 PRK04165 acetyl-CoA decarbonyl 68.1 28 0.0006 33.4 8.2 65 61-129 158-222 (450)
136 cd06338 PBP1_ABC_ligand_bindin 68.0 82 0.0018 27.4 10.8 51 44-95 183-235 (345)
137 TIGR01361 DAHP_synth_Bsub phos 67.8 36 0.00078 30.0 8.3 79 67-150 144-234 (260)
138 PRK14620 NAD(P)H-dependent gly 67.3 65 0.0014 28.6 10.1 86 1-94 11-111 (326)
139 cd06313 PBP1_ABC_sugar_binding 66.4 72 0.0016 26.9 9.8 39 50-88 48-86 (272)
140 cd06331 PBP1_AmiC_like Type I 66.3 37 0.00079 29.7 8.2 57 43-100 173-232 (333)
141 cd01539 PBP1_GGBP Periplasmic 65.8 75 0.0016 27.4 10.0 38 50-87 50-87 (303)
142 PF03446 NAD_binding_2: NAD bi 65.7 32 0.00069 27.5 7.1 66 1-77 12-77 (163)
143 PRK08223 hypothetical protein; 65.7 16 0.00034 33.0 5.7 33 57-90 117-152 (287)
144 PRK06079 enoyl-(acyl carrier p 65.6 38 0.00083 28.5 7.9 72 1-93 21-94 (252)
145 cd06324 PBP1_ABC_sugar_binding 65.4 74 0.0016 27.4 9.9 36 52-88 51-88 (305)
146 PRK09496 trkA potassium transp 65.3 73 0.0016 29.3 10.3 121 1-124 11-136 (453)
147 cd06363 PBP1_Taste_receptor Li 65.3 31 0.00067 31.5 7.8 50 44-94 221-272 (410)
148 PF07075 DUF1343: Protein of u 64.9 16 0.00035 34.0 5.8 145 3-159 15-192 (365)
149 cd01879 FeoB Ferrous iron tran 64.8 36 0.00078 25.7 7.0 71 57-127 74-154 (158)
150 PRK06139 short chain dehydroge 64.8 39 0.00085 30.3 8.2 72 1-92 19-94 (330)
151 TIGR03787 marine_sort_RR prote 64.8 60 0.0013 26.1 8.7 68 47-116 34-107 (227)
152 PRK07531 bifunctional 3-hydrox 64.6 29 0.00064 33.2 7.7 104 1-113 15-140 (495)
153 cd06268 PBP1_ABC_transporter_L 63.9 81 0.0018 25.9 10.2 51 45-96 178-229 (298)
154 TIGR03569 NeuB_NnaB N-acetylne 63.6 41 0.0009 30.8 8.1 77 61-150 136-226 (329)
155 cd06349 PBP1_ABC_ligand_bindin 63.5 86 0.0019 27.3 10.0 53 43-96 176-229 (340)
156 PRK12939 short chain dehydroge 63.5 52 0.0011 27.0 8.2 72 1-92 19-94 (250)
157 PLN02778 3,5-epimerase/4-reduc 63.4 49 0.0011 29.0 8.4 70 1-91 21-111 (298)
158 TIGR03570 NeuD_NnaD sugar O-ac 63.4 66 0.0014 25.6 8.6 77 1-85 10-86 (201)
159 PTZ00431 pyrroline carboxylate 63.2 91 0.002 26.9 9.9 44 57-101 57-102 (260)
160 PF00532 Peripla_BP_1: Peripla 63.2 58 0.0013 28.3 8.8 43 47-91 46-88 (279)
161 PRK09490 metH B12-dependent me 63.1 88 0.0019 33.8 11.4 80 47-126 792-877 (1229)
162 cd06309 PBP1_YtfQ_like Peripla 63.1 69 0.0015 26.7 9.0 40 50-89 48-87 (273)
163 cd08281 liver_ADH_like1 Zinc-d 62.9 28 0.00062 31.2 7.0 33 57-90 259-292 (371)
164 PRK12738 kbaY tagatose-bisphos 62.6 40 0.00086 30.4 7.7 54 57-110 17-79 (286)
165 cd06318 PBP1_ABC_sugar_binding 62.6 91 0.002 26.0 9.8 39 50-88 48-86 (282)
166 cd01536 PBP1_ABC_sugar_binding 62.5 84 0.0018 25.6 10.5 41 50-90 48-88 (267)
167 cd02071 MM_CoA_mut_B12_BD meth 62.3 68 0.0015 24.5 11.9 67 50-118 43-115 (122)
168 TIGR00683 nanA N-acetylneurami 62.1 34 0.00075 30.3 7.2 15 81-95 69-83 (290)
169 PLN02350 phosphogluconate dehy 62.0 49 0.0011 32.0 8.7 23 1-24 17-39 (493)
170 cd00952 CHBPH_aldolase Trans-o 62.0 25 0.00055 31.5 6.4 17 79-95 74-90 (309)
171 KOG1014 17 beta-hydroxysteroid 61.9 15 0.00032 33.6 4.8 73 1-93 61-137 (312)
172 cd06321 PBP1_ABC_sugar_binding 61.9 92 0.002 25.9 10.9 36 55-90 55-90 (271)
173 cd06375 PBP1_mGluR_groupII Lig 61.5 42 0.00091 31.5 8.0 48 45-93 219-268 (458)
174 PTZ00023 glyceraldehyde-3-phos 61.4 32 0.00069 31.7 7.0 87 1-90 13-122 (337)
175 cd06335 PBP1_ABC_ligand_bindin 61.4 47 0.001 29.3 8.0 52 43-95 179-231 (347)
176 PLN02700 homoserine dehydrogen 60.9 74 0.0016 29.8 9.4 65 58-124 110-177 (377)
177 TIGR00872 gnd_rel 6-phosphoglu 60.4 82 0.0018 27.8 9.3 84 1-93 11-97 (298)
178 cd01391 Periplasmic_Binding_Pr 60.3 84 0.0018 24.9 9.2 41 50-91 51-91 (269)
179 cd06319 PBP1_ABC_sugar_binding 60.1 47 0.001 27.7 7.4 34 55-88 53-86 (277)
180 cd06323 PBP1_ribose_binding Pe 59.9 97 0.0021 25.4 10.2 40 49-88 47-86 (268)
181 cd01018 ZntC Metal binding pro 59.9 61 0.0013 28.1 8.3 48 67-114 202-249 (266)
182 KOG1255 Succinyl-CoA synthetas 59.8 66 0.0014 28.9 8.3 95 7-113 56-154 (329)
183 PRK09195 gatY tagatose-bisphos 59.8 48 0.001 29.8 7.7 54 57-110 17-79 (284)
184 COG1810 Uncharacterized protei 59.7 1.1E+02 0.0025 26.7 9.6 112 45-168 45-171 (224)
185 PRK11559 garR tartronate semia 59.5 80 0.0017 27.5 9.0 23 1-24 13-35 (296)
186 PF07085 DRTGG: DRTGG domain; 59.4 25 0.00055 26.0 5.1 66 44-116 29-96 (105)
187 PRK06953 short chain dehydroge 59.0 54 0.0012 26.8 7.5 69 1-93 13-81 (222)
188 PRK05867 short chain dehydroge 58.8 55 0.0012 27.3 7.6 72 1-92 21-96 (253)
189 PRK09701 D-allose transporter 58.6 1E+02 0.0022 26.9 9.5 41 50-90 75-115 (311)
190 PRK07680 late competence prote 58.4 1.2E+02 0.0026 26.2 10.0 91 1-100 11-107 (273)
191 PRK12935 acetoacetyl-CoA reduc 58.4 57 0.0012 26.9 7.6 73 1-92 18-94 (247)
192 PRK12743 oxidoreductase; Provi 58.2 72 0.0016 26.7 8.3 73 1-92 14-90 (256)
193 PLN03096 glyceraldehyde-3-phos 58.1 62 0.0013 30.5 8.4 122 1-132 71-228 (395)
194 cd00953 KDG_aldolase KDG (2-ke 58.1 19 0.0004 31.8 4.8 23 69-91 20-44 (279)
195 PF00809 Pterin_bind: Pterin b 57.9 22 0.00047 30.1 5.0 51 60-114 74-125 (210)
196 cd06343 PBP1_ABC_ligand_bindin 57.8 1E+02 0.0023 27.1 9.6 56 44-100 186-244 (362)
197 TIGR03451 mycoS_dep_FDH mycoth 57.7 54 0.0012 29.2 7.8 34 57-91 245-279 (358)
198 PF14226 DIOX_N: non-haem diox 57.6 15 0.00033 27.2 3.6 35 62-97 3-42 (116)
199 PRK06901 aspartate-semialdehyd 57.6 1.1E+02 0.0024 28.1 9.7 103 2-116 15-132 (322)
200 PF00899 ThiF: ThiF family; I 57.5 17 0.00038 28.0 4.0 32 57-89 92-124 (135)
201 PF13561 adh_short_C2: Enoyl-( 57.4 13 0.00029 31.0 3.6 72 1-92 8-83 (241)
202 PRK09436 thrA bifunctional asp 57.4 28 0.00061 35.7 6.5 66 58-124 548-619 (819)
203 cd00408 DHDPS-like Dihydrodipi 57.1 18 0.00039 31.4 4.5 12 82-93 66-77 (281)
204 PRK07403 glyceraldehyde-3-phos 57.0 44 0.00095 30.8 7.1 86 1-89 12-121 (337)
205 PRK11880 pyrroline-5-carboxyla 57.0 91 0.002 26.6 8.8 91 1-101 13-106 (267)
206 cd01017 AdcA Metal binding pro 56.9 62 0.0013 28.3 7.9 8 78-85 185-192 (282)
207 PRK05565 fabG 3-ketoacyl-(acyl 56.9 66 0.0014 26.3 7.7 74 1-93 17-94 (247)
208 PRK05557 fabG 3-ketoacyl-(acyl 56.6 93 0.002 25.2 8.5 73 1-92 17-93 (248)
209 PLN02417 dihydrodipicolinate s 56.5 45 0.00098 29.3 7.0 32 68-99 21-58 (280)
210 cd06310 PBP1_ABC_sugar_binding 56.5 69 0.0015 26.6 7.9 39 50-88 50-88 (273)
211 PRK12745 3-ketoacyl-(acyl-carr 56.4 89 0.0019 25.8 8.5 73 1-92 14-90 (256)
212 PF06074 DUF935: Protein of un 56.3 19 0.00042 34.6 4.9 32 70-101 222-255 (516)
213 PRK07478 short chain dehydroge 56.3 75 0.0016 26.4 8.0 72 1-92 18-93 (254)
214 PRK01710 murD UDP-N-acetylmura 56.1 1.8E+02 0.0038 27.3 11.8 21 2-23 26-46 (458)
215 cd06388 PBP1_iGluR_AMPA_GluR4 56.0 62 0.0013 29.5 8.0 56 44-100 165-225 (371)
216 cd02067 B12-binding B12 bindin 56.0 83 0.0018 23.5 8.2 44 51-94 44-93 (119)
217 CHL00194 ycf39 Ycf39; Provisio 56.0 56 0.0012 28.7 7.5 82 1-87 12-106 (317)
218 cd06352 PBP1_NPR_GC_like Ligan 55.9 80 0.0017 28.1 8.6 48 44-93 182-233 (389)
219 cd06333 PBP1_ABC-type_HAAT_lik 55.8 1.3E+02 0.0029 25.7 10.2 52 45-97 176-228 (312)
220 PRK06806 fructose-bisphosphate 55.8 63 0.0014 28.8 7.8 54 57-110 17-79 (281)
221 PRK09987 dTDP-4-dehydrorhamnos 55.8 68 0.0015 28.0 7.9 75 1-90 12-104 (299)
222 TIGR01496 DHPS dihydropteroate 55.8 46 0.00099 29.2 6.8 49 61-113 78-126 (257)
223 PRK07062 short chain dehydroge 55.7 92 0.002 26.1 8.5 72 1-92 20-97 (265)
224 COG1879 RbsB ABC-type sugar tr 55.6 65 0.0014 28.1 7.8 39 55-93 89-127 (322)
225 TIGR03586 PseI pseudaminic aci 55.5 56 0.0012 29.9 7.5 74 66-152 144-227 (327)
226 PLN03194 putative disease resi 55.3 77 0.0017 26.9 7.8 108 56-167 25-146 (187)
227 PRK09466 metL bifunctional asp 55.1 37 0.0008 34.9 6.9 62 60-121 543-610 (810)
228 TIGR01520 FruBisAldo_II_A fruc 55.0 47 0.001 31.0 6.9 49 44-92 13-61 (357)
229 PRK05993 short chain dehydroge 55.0 69 0.0015 27.3 7.8 68 1-92 16-86 (277)
230 PRK13111 trpA tryptophan synth 54.9 26 0.00057 30.8 5.2 53 51-104 111-165 (258)
231 cd00739 DHPS DHPS subgroup of 54.9 61 0.0013 28.4 7.4 49 61-113 79-128 (257)
232 PRK09197 fructose-bisphosphate 54.9 53 0.0012 30.5 7.3 48 45-92 8-55 (350)
233 PRK05693 short chain dehydroge 54.4 95 0.0021 26.2 8.5 68 1-92 13-82 (274)
234 PRK12829 short chain dehydroge 54.2 87 0.0019 26.0 8.1 33 61-93 63-97 (264)
235 cd00947 TBP_aldolase_IIB Tagat 54.1 62 0.0013 29.0 7.4 50 61-110 16-74 (276)
236 PRK15447 putative protease; Pr 53.8 84 0.0018 28.1 8.3 72 44-116 15-99 (301)
237 PRK03170 dihydrodipicolinate s 53.7 59 0.0013 28.5 7.2 12 82-93 70-81 (292)
238 cd06356 PBP1_Amide_Urea_BP_lik 53.7 1E+02 0.0022 27.1 8.7 40 43-83 173-212 (334)
239 PRK08040 putative semialdehyde 53.7 86 0.0019 28.8 8.4 103 2-118 17-137 (336)
240 PRK09545 znuA high-affinity zi 53.7 75 0.0016 28.5 8.0 40 69-108 239-278 (311)
241 PRK13505 formate--tetrahydrofo 53.6 83 0.0018 31.1 8.7 102 69-170 359-480 (557)
242 COG1064 AdhP Zn-dependent alco 53.2 47 0.001 30.7 6.6 120 1-130 178-301 (339)
243 PRK00094 gpsA NAD(P)H-dependen 53.2 62 0.0014 28.3 7.3 106 1-115 12-139 (325)
244 TIGR01534 GAPDH-I glyceraldehy 53.1 62 0.0013 29.6 7.4 86 1-89 10-121 (327)
245 PF00701 DHDPS: Dihydrodipicol 53.0 26 0.00057 30.7 4.9 23 69-91 22-46 (289)
246 PRK10309 galactitol-1-phosphat 52.9 67 0.0014 28.3 7.5 88 1-91 172-263 (347)
247 PRK06463 fabG 3-ketoacyl-(acyl 52.9 1.2E+02 0.0025 25.3 8.7 69 1-92 19-89 (255)
248 TIGR03026 NDP-sugDHase nucleot 52.8 1.3E+02 0.0028 27.8 9.7 22 1-23 11-32 (411)
249 PRK07998 gatY putative fructos 52.7 68 0.0015 28.8 7.5 32 60-91 20-51 (283)
250 PRK08340 glucose-1-dehydrogena 52.6 86 0.0019 26.3 7.9 72 1-92 12-86 (259)
251 TIGR01214 rmlD dTDP-4-dehydror 52.5 1E+02 0.0022 26.0 8.4 69 1-87 11-97 (287)
252 PRK08267 short chain dehydroge 52.4 92 0.002 26.0 8.0 72 1-92 13-87 (260)
253 PRK05865 hypothetical protein; 52.4 1.3E+02 0.0029 31.2 10.3 99 1-108 12-120 (854)
254 TIGR02313 HpaI-NOT-DapA 2,4-di 52.4 67 0.0014 28.5 7.4 24 68-91 20-45 (294)
255 PRK10840 transcriptional regul 52.2 1E+02 0.0022 25.0 8.1 72 44-116 36-113 (216)
256 PRK07679 pyrroline-5-carboxyla 52.2 1.6E+02 0.0034 25.6 10.6 104 1-115 14-125 (279)
257 TIGR01182 eda Entner-Doudoroff 52.1 79 0.0017 27.0 7.5 62 55-118 31-93 (204)
258 PRK06114 short chain dehydroge 52.1 1.2E+02 0.0027 25.2 8.8 73 1-92 20-96 (254)
259 PRK12857 fructose-1,6-bisphosp 52.0 82 0.0018 28.3 7.9 54 57-110 17-79 (284)
260 cd00762 NAD_bind_malic_enz NAD 51.8 15 0.00032 32.6 3.0 34 80-113 104-142 (254)
261 smart00859 Semialdhyde_dh Semi 51.6 63 0.0014 24.2 6.2 83 1-87 11-97 (122)
262 cd00954 NAL N-Acetylneuraminic 51.5 77 0.0017 27.9 7.6 23 69-91 21-46 (288)
263 COG2229 Predicted GTPase [Gene 51.5 53 0.0011 27.9 6.1 51 60-110 96-157 (187)
264 cd06371 PBP1_sensory_GC_DEF_li 51.5 84 0.0018 28.5 8.1 47 44-91 174-230 (382)
265 cd06362 PBP1_mGluR Ligand bind 51.4 70 0.0015 29.4 7.7 49 45-94 217-269 (452)
266 PRK07666 fabG 3-ketoacyl-(acyl 51.4 82 0.0018 25.9 7.4 32 61-92 61-94 (239)
267 TIGR01505 tartro_sem_red 2-hyd 51.4 1.1E+02 0.0024 26.6 8.6 23 1-24 10-32 (291)
268 KOG1673 Ras GTPases [General f 51.2 1.1E+02 0.0025 25.8 7.9 69 62-133 99-187 (205)
269 PRK06801 hypothetical protein; 51.2 95 0.0021 27.9 8.2 54 57-110 17-79 (286)
270 PRK05671 aspartate-semialdehyd 51.2 2E+02 0.0042 26.3 11.3 102 2-116 17-133 (336)
271 PF04321 RmlD_sub_bind: RmlD s 51.2 30 0.00065 30.3 4.9 73 1-91 12-102 (286)
272 PLN00016 RNA-binding protein; 51.1 1.1E+02 0.0025 27.5 8.9 84 1-86 68-161 (378)
273 PRK11150 rfaD ADP-L-glycero-D- 51.1 63 0.0014 27.9 6.9 87 1-91 11-117 (308)
274 PRK10481 hypothetical protein; 50.9 1.7E+02 0.0036 25.4 9.5 44 68-111 168-212 (224)
275 cd06278 PBP1_LacI_like_2 Ligan 50.9 1.4E+02 0.003 24.5 10.8 37 50-88 47-83 (266)
276 PLN02272 glyceraldehyde-3-phos 50.8 2.3E+02 0.005 27.0 11.1 80 1-83 96-199 (421)
277 TIGR02825 B4_12hDH leukotriene 50.8 39 0.00084 29.4 5.6 88 1-90 151-239 (325)
278 PRK10669 putative cation:proto 50.7 2.2E+02 0.0047 27.5 11.2 116 1-122 428-545 (558)
279 PRK12737 gatY tagatose-bisphos 50.5 95 0.0021 27.9 8.0 54 57-110 17-79 (284)
280 cd00950 DHDPS Dihydrodipicolin 50.5 28 0.0006 30.4 4.6 23 69-91 21-45 (284)
281 COG2197 CitB Response regulato 50.2 1.5E+02 0.0033 24.8 11.6 57 46-102 35-94 (211)
282 cd02070 corrinoid_protein_B12- 50.2 1.5E+02 0.0032 24.6 9.7 66 47-118 123-196 (201)
283 PRK12595 bifunctional 3-deoxy- 50.1 1.5E+02 0.0034 27.4 9.6 84 65-154 235-330 (360)
284 cd08291 ETR_like_1 2-enoyl thi 50.1 70 0.0015 27.8 7.1 87 1-91 156-245 (324)
285 cd06344 PBP1_ABC_ligand_bindin 50.1 1.6E+02 0.0034 25.7 9.4 50 46-96 180-230 (332)
286 PRK10816 DNA-binding transcrip 50.0 1.3E+02 0.0029 24.0 8.5 71 45-116 32-105 (223)
287 TIGR01858 tag_bisphos_ald clas 49.8 86 0.0019 28.1 7.7 52 59-110 17-77 (282)
288 PRK07890 short chain dehydroge 49.7 94 0.002 25.7 7.6 72 1-92 17-92 (258)
289 PRK08643 acetoin reductase; Va 49.6 1.1E+02 0.0023 25.5 7.9 72 1-92 14-89 (256)
290 PRK14852 hypothetical protein; 49.6 90 0.0019 33.0 8.6 34 56-90 421-457 (989)
291 cd08293 PTGR2 Prostaglandin re 49.5 69 0.0015 27.9 7.0 87 1-90 167-256 (345)
292 KOG1198 Zinc-binding oxidoredu 49.2 29 0.00062 31.9 4.6 34 57-92 202-235 (347)
293 PRK07984 enoyl-(acyl carrier p 49.1 1.2E+02 0.0025 26.0 8.2 71 1-92 20-94 (262)
294 COG2910 Putative NADH-flavin r 49.1 71 0.0015 27.5 6.6 20 2-21 13-32 (211)
295 COG2984 ABC-type uncharacteriz 49.1 1.4E+02 0.003 27.5 8.9 93 42-146 73-194 (322)
296 PTZ00386 formyl tetrahydrofola 49.0 53 0.0012 32.7 6.6 101 70-170 425-547 (625)
297 PRK08589 short chain dehydroge 48.9 1.4E+02 0.0029 25.4 8.6 71 1-92 18-92 (272)
298 PRK07877 hypothetical protein; 48.9 75 0.0016 32.3 7.9 33 57-90 196-229 (722)
299 cd01137 PsaA Metal binding pro 48.9 77 0.0017 28.0 7.2 37 69-105 213-249 (287)
300 PRK12937 short chain dehydroge 48.7 98 0.0021 25.3 7.5 73 1-92 17-93 (245)
301 cd06322 PBP1_ABC_sugar_binding 48.6 1.5E+02 0.0033 24.4 10.3 39 50-88 48-86 (267)
302 cd01301 rDP_like renal dipepti 48.6 56 0.0012 29.5 6.3 79 48-132 158-254 (309)
303 PRK10653 D-ribose transporter 48.5 88 0.0019 26.7 7.4 33 55-87 80-112 (295)
304 cd06357 PBP1_AmiC Periplasmic 48.4 1.7E+02 0.0037 26.0 9.5 57 43-100 175-234 (360)
305 COG0569 TrkA K+ transport syst 48.4 1.7E+02 0.0037 24.9 10.0 121 1-126 11-134 (225)
306 COG0027 PurT Formate-dependent 48.3 1.2E+02 0.0026 28.3 8.3 108 1-116 23-160 (394)
307 PRK08328 hypothetical protein; 48.3 39 0.00086 28.9 5.1 33 57-90 118-151 (231)
308 COG0300 DltE Short-chain dehyd 48.3 69 0.0015 28.5 6.7 72 1-92 18-94 (265)
309 PLN02237 glyceraldehyde-3-phos 48.1 99 0.0022 29.7 8.1 88 1-92 86-198 (442)
310 TIGR01501 MthylAspMutase methy 48.1 1.4E+02 0.003 23.8 10.9 93 2-116 17-121 (134)
311 cd06311 PBP1_ABC_sugar_binding 48.1 1.2E+02 0.0026 25.2 8.1 38 50-87 53-90 (274)
312 TIGR02461 osmo_MPG_phos mannos 48.0 52 0.0011 27.9 5.8 35 70-105 19-53 (225)
313 PRK07109 short chain dehydroge 48.0 1E+02 0.0022 27.5 7.9 72 1-92 20-95 (334)
314 PRK07063 short chain dehydroge 47.8 88 0.0019 26.1 7.2 72 1-92 19-96 (260)
315 PRK15456 universal stress prot 47.7 82 0.0018 23.9 6.4 49 61-111 86-141 (142)
316 TIGR03278 methan_mark_10 putat 47.7 55 0.0012 30.9 6.3 46 66-111 86-135 (404)
317 PRK12429 3-hydroxybutyrate deh 47.7 1.2E+02 0.0025 25.0 7.8 72 1-92 16-91 (258)
318 PRK07634 pyrroline-5-carboxyla 47.7 1.7E+02 0.0036 24.5 10.5 107 1-118 15-128 (245)
319 PRK07806 short chain dehydroge 47.3 1.5E+02 0.0033 24.3 8.5 74 1-93 18-95 (248)
320 PRK07814 short chain dehydroge 47.0 1.2E+02 0.0027 25.4 8.0 72 1-92 22-97 (263)
321 PRK10124 putative UDP-glucose 47.0 96 0.0021 29.5 8.0 77 2-89 155-237 (463)
322 PRK04308 murD UDP-N-acetylmura 46.9 2.4E+02 0.0052 26.1 11.8 21 1-22 16-36 (445)
323 PRK06200 2,3-dihydroxy-2,3-dih 46.8 94 0.002 26.0 7.2 71 1-92 18-90 (263)
324 PRK00696 sucC succinyl-CoA syn 46.8 1.8E+02 0.0039 26.7 9.5 49 73-121 331-381 (388)
325 cd08294 leukotriene_B4_DH_like 46.7 84 0.0018 27.0 7.0 32 57-89 211-242 (329)
326 COG1063 Tdh Threonine dehydrog 46.6 88 0.0019 28.3 7.4 92 1-93 180-274 (350)
327 cd04165 GTPBP1_like GTPBP1-lik 46.6 1.2E+02 0.0026 25.8 7.8 37 57-93 109-149 (224)
328 PRK09880 L-idonate 5-dehydroge 46.5 77 0.0017 28.0 6.9 33 58-91 236-269 (343)
329 PRK10355 xylF D-xylose transpo 46.5 1E+02 0.0022 27.3 7.7 39 49-87 73-111 (330)
330 PRK08862 short chain dehydroge 46.3 1.3E+02 0.0027 25.2 7.9 71 1-91 17-92 (227)
331 cd06326 PBP1_STKc_like Type I 46.1 1.9E+02 0.0042 24.8 10.2 53 44-97 178-231 (336)
332 PRK06947 glucose-1-dehydrogena 46.1 1.7E+02 0.0036 24.1 8.5 73 1-92 14-90 (248)
333 cd06376 PBP1_mGluR_groupIII Li 46.1 43 0.00094 31.2 5.4 49 45-94 218-270 (463)
334 PRK07315 fructose-bisphosphate 46.1 1.2E+02 0.0025 27.3 7.9 54 57-110 17-82 (293)
335 PRK10360 DNA-binding transcrip 46.1 1.4E+02 0.003 23.2 7.7 71 44-116 34-105 (196)
336 cd06374 PBP1_mGluR_groupI Liga 46.1 1.3E+02 0.0028 28.1 8.6 50 45-94 231-284 (472)
337 PRK07831 short chain dehydroge 46.0 1E+02 0.0022 25.8 7.3 32 61-92 74-107 (262)
338 cd06320 PBP1_allose_binding Pe 46.0 1.7E+02 0.0038 24.2 10.8 39 50-89 50-89 (275)
339 COG1086 Predicted nucleoside-d 45.8 71 0.0015 31.7 6.9 78 2-86 128-208 (588)
340 TIGR01859 fruc_bis_ald_ fructo 45.7 1.1E+02 0.0023 27.4 7.6 55 57-111 15-80 (282)
341 PRK09496 trkA potassium transp 45.7 2.4E+02 0.0053 25.8 11.2 120 1-124 242-362 (453)
342 PF01565 FAD_binding_4: FAD bi 45.6 42 0.00092 25.6 4.5 34 61-94 3-36 (139)
343 COG0604 Qor NADPH:quinone redu 45.5 94 0.002 28.0 7.3 17 2-18 156-172 (326)
344 PF00009 GTP_EFTU: Elongation 45.4 1.5E+02 0.0032 23.8 7.9 68 57-124 93-181 (188)
345 TIGR02355 moeB molybdopterin s 45.4 37 0.0008 29.4 4.5 33 57-90 114-147 (240)
346 PRK07825 short chain dehydroge 45.3 1.1E+02 0.0024 25.8 7.4 70 1-92 17-88 (273)
347 PRK08185 hypothetical protein; 45.3 1.2E+02 0.0025 27.3 7.8 52 59-110 14-73 (283)
348 PRK01395 V-type ATP synthase s 45.3 72 0.0016 24.2 5.6 64 64-128 27-98 (104)
349 PRK06196 oxidoreductase; Provi 45.3 1.1E+02 0.0023 26.8 7.6 70 1-92 38-109 (315)
350 PLN02740 Alcohol dehydrogenase 45.2 96 0.0021 28.0 7.4 35 57-92 268-304 (381)
351 cd06314 PBP1_tmGBP Periplasmic 45.0 1.8E+02 0.0039 24.2 10.0 38 50-88 48-85 (271)
352 PRK08339 short chain dehydroge 45.0 1E+02 0.0023 26.1 7.3 72 1-92 20-95 (263)
353 PRK08594 enoyl-(acyl carrier p 44.9 1.3E+02 0.0029 25.3 7.9 75 1-92 21-97 (257)
354 cd05017 SIS_PGI_PMI_1 The memb 44.9 1.1E+02 0.0025 22.8 6.8 51 58-112 44-97 (119)
355 PLN02260 probable rhamnose bio 44.8 1.1E+02 0.0024 30.0 8.3 22 70-91 461-482 (668)
356 cd01485 E1-1_like Ubiquitin ac 44.6 44 0.00096 27.9 4.8 33 57-90 113-146 (198)
357 PRK12490 6-phosphogluconate de 44.6 1.6E+02 0.0035 25.9 8.6 23 1-24 11-33 (299)
358 cd00477 FTHFS Formyltetrahydro 44.5 1.2E+02 0.0025 29.8 8.0 102 69-170 343-463 (524)
359 PRK15411 rcsA colanic acid cap 44.5 63 0.0014 27.0 5.7 81 45-129 35-121 (207)
360 PRK06198 short chain dehydroge 44.5 1.4E+02 0.0029 24.8 7.8 32 61-92 61-94 (260)
361 TIGR00674 dapA dihydrodipicoli 44.4 1.1E+02 0.0023 26.8 7.4 13 82-94 67-79 (285)
362 PRK04452 acetyl-CoA decarbonyl 44.4 1E+02 0.0022 28.3 7.3 11 81-91 123-133 (319)
363 PRK05876 short chain dehydroge 44.3 1.2E+02 0.0026 25.9 7.6 72 1-92 18-93 (275)
364 cd08278 benzyl_alcohol_DH Benz 44.2 94 0.002 27.8 7.2 33 57-90 254-287 (365)
365 PRK01438 murD UDP-N-acetylmura 44.2 2.7E+02 0.0059 26.0 10.9 20 2-22 28-47 (480)
366 PRK10701 DNA-binding transcrip 44.1 1.7E+02 0.0038 23.7 8.9 52 45-96 33-86 (240)
367 COG3707 AmiR Response regulato 44.0 1.6E+02 0.0035 25.1 8.0 57 55-112 48-107 (194)
368 TIGR02356 adenyl_thiF thiazole 44.0 1.7E+02 0.0038 24.3 8.3 21 1-21 32-52 (202)
369 PRK07878 molybdopterin biosynt 43.7 41 0.00088 31.2 4.8 33 56-89 131-164 (392)
370 PLN02827 Alcohol dehydrogenase 43.5 84 0.0018 28.5 6.8 34 57-91 263-298 (378)
371 PF10087 DUF2325: Uncharacteri 43.5 75 0.0016 23.2 5.4 36 82-117 48-87 (97)
372 PF00106 adh_short: short chai 43.5 1.1E+02 0.0024 23.4 6.7 76 1-93 12-91 (167)
373 PRK12746 short chain dehydroge 43.4 1.4E+02 0.003 24.7 7.7 73 1-92 18-100 (254)
374 TIGR01831 fabG_rel 3-oxoacyl-( 43.3 1.7E+02 0.0037 23.9 8.1 73 1-92 10-86 (239)
375 cd00381 IMPDH IMPDH: The catal 43.3 90 0.002 28.3 6.9 50 52-102 101-154 (325)
376 PRK04165 acetyl-CoA decarbonyl 43.2 2.1E+02 0.0046 27.4 9.6 56 58-115 128-188 (450)
377 TIGR01282 nifD nitrogenase mol 43.0 40 0.00086 32.2 4.7 33 99-133 272-304 (466)
378 PRK07677 short chain dehydroge 42.9 1.7E+02 0.0037 24.2 8.2 72 1-92 13-88 (252)
379 smart00481 POLIIIAc DNA polyme 42.8 88 0.0019 20.9 5.3 43 47-89 18-61 (67)
380 cd06302 PBP1_LsrB_Quorum_Sensi 42.7 2.2E+02 0.0047 24.4 10.1 37 51-87 50-86 (298)
381 COG2130 Putative NADP-dependen 42.7 1.1E+02 0.0023 28.4 7.1 49 57-107 196-246 (340)
382 PRK07709 fructose-bisphosphate 42.5 1.4E+02 0.003 26.9 7.8 54 57-110 17-82 (285)
383 TIGR02634 xylF D-xylose ABC tr 42.5 1.5E+02 0.0032 25.7 7.9 38 50-88 47-85 (302)
384 cd04509 PBP1_ABC_transporter_G 42.5 1.9E+02 0.0041 23.7 11.3 49 44-93 178-229 (299)
385 PF01210 NAD_Gly3P_dh_N: NAD-d 42.4 48 0.001 26.4 4.5 107 1-117 10-138 (157)
386 PRK06483 dihydromonapterin red 42.4 1.4E+02 0.003 24.5 7.5 69 1-92 14-84 (236)
387 TIGR02415 23BDH acetoin reduct 42.4 1.6E+02 0.0035 24.2 7.9 72 1-92 12-87 (254)
388 PRK12825 fabG 3-ketoacyl-(acyl 42.4 1.7E+02 0.0037 23.6 8.0 75 1-92 18-94 (249)
389 PRK09581 pleD response regulat 42.3 1.7E+02 0.0037 26.1 8.5 69 44-112 33-106 (457)
390 cd06330 PBP1_Arsenic_SBP_like 42.3 86 0.0019 27.4 6.5 50 44-94 182-234 (346)
391 PRK07074 short chain dehydroge 42.3 1.8E+02 0.0038 24.1 8.2 73 1-93 14-88 (257)
392 TIGR02717 AcCoA-syn-alpha acet 42.2 70 0.0015 30.3 6.2 42 74-115 393-436 (447)
393 PRK08416 7-alpha-hydroxysteroi 42.2 1E+02 0.0023 25.8 6.8 72 1-91 20-96 (260)
394 PRK13507 formate--tetrahydrofo 42.2 1.1E+02 0.0025 30.3 7.7 99 71-169 390-507 (587)
395 cd00532 MGS-like MGS-like doma 42.1 46 0.001 25.1 4.1 36 51-87 61-104 (112)
396 PRK08628 short chain dehydroge 42.0 1.6E+02 0.0035 24.4 7.9 71 1-92 19-93 (258)
397 cd01540 PBP1_arabinose_binding 42.0 1.2E+02 0.0025 25.5 7.1 38 51-88 48-85 (289)
398 PRK08063 enoyl-(acyl carrier p 42.0 1.4E+02 0.0031 24.4 7.5 73 1-92 16-92 (250)
399 TIGR00167 cbbA ketose-bisphosp 42.0 1.2E+02 0.0027 27.1 7.5 35 57-91 17-51 (288)
400 cd06316 PBP1_ABC_sugar_binding 41.9 1.3E+02 0.0028 25.5 7.4 35 52-87 51-86 (294)
401 PRK01130 N-acetylmannosamine-6 41.9 86 0.0019 26.2 6.2 33 57-89 88-126 (221)
402 COG1066 Sms Predicted ATP-depe 41.9 71 0.0015 30.7 6.0 51 37-87 148-215 (456)
403 PF12738 PTCB-BRCT: twin BRCT 41.9 3.6 7.9E-05 27.6 -1.9 31 85-115 1-32 (63)
404 PRK12744 short chain dehydroge 41.8 1.8E+02 0.0039 24.2 8.1 32 61-92 66-99 (257)
405 PRK11320 prpB 2-methylisocitra 41.8 2.6E+02 0.0057 25.1 10.9 57 56-118 178-240 (292)
406 PF07287 DUF1446: Protein of u 41.7 52 0.0011 30.7 5.1 46 68-113 57-110 (362)
407 cd05279 Zn_ADH1 Liver alcohol 41.7 96 0.0021 27.7 6.8 35 56-91 252-288 (365)
408 PRK06124 gluconate 5-dehydroge 41.6 1.8E+02 0.004 24.0 8.1 72 1-92 23-98 (256)
409 PRK06841 short chain dehydroge 41.4 1.9E+02 0.0041 23.9 8.2 32 61-92 66-99 (255)
410 PLN02759 Formate--tetrahydrofo 41.3 1.6E+02 0.0035 29.6 8.5 100 71-170 439-559 (637)
411 cd01538 PBP1_ABC_xylose_bindin 41.2 1.6E+02 0.0034 25.0 7.8 39 50-88 48-86 (288)
412 TIGR03366 HpnZ_proposed putati 41.1 1.1E+02 0.0023 26.3 6.7 33 57-90 187-220 (280)
413 PRK08177 short chain dehydroge 41.1 2E+02 0.0042 23.5 8.1 69 1-92 13-81 (225)
414 PRK12738 kbaY tagatose-bisphos 41.0 77 0.0017 28.5 6.0 59 45-103 156-224 (286)
415 PRK09134 short chain dehydroge 41.0 2E+02 0.0043 24.0 8.3 73 1-92 21-97 (258)
416 PRK12828 short chain dehydroge 41.0 1.9E+02 0.0041 23.3 8.6 72 1-92 19-92 (239)
417 PRK05835 fructose-bisphosphate 40.9 1.4E+02 0.0031 27.2 7.7 52 59-110 18-79 (307)
418 cd01309 Met_dep_hydrolase_C Me 40.9 1.4E+02 0.003 27.1 7.7 54 61-115 195-248 (359)
419 PRK05597 molybdopterin biosynt 40.8 49 0.0011 30.3 4.8 33 56-89 117-150 (355)
420 cd01492 Aos1_SUMO Ubiquitin ac 40.6 57 0.0012 27.3 4.8 64 57-130 110-176 (197)
421 TIGR03407 urea_ABC_UrtA urea A 40.5 1.7E+02 0.0036 26.1 8.2 55 44-100 176-234 (359)
422 PF00582 Usp: Universal stress 40.5 1.3E+02 0.0029 21.4 6.4 52 61-112 81-140 (140)
423 cd08295 double_bond_reductase_ 40.4 1.1E+02 0.0023 26.9 6.8 87 1-91 164-254 (338)
424 PRK08085 gluconate 5-dehydroge 40.4 1.7E+02 0.0036 24.3 7.7 72 1-92 21-96 (254)
425 PRK09730 putative NAD(P)-bindi 40.3 2E+02 0.0044 23.4 8.4 74 1-93 13-90 (247)
426 cd06281 PBP1_LacI_like_5 Ligan 40.3 2.1E+02 0.0046 23.6 10.6 39 50-89 48-86 (269)
427 PRK06728 aspartate-semialdehyd 40.2 1.7E+02 0.0036 27.1 8.1 99 2-116 18-134 (347)
428 PRK07411 hypothetical protein; 40.2 44 0.00095 31.1 4.4 35 57-92 128-164 (390)
429 cd06332 PBP1_aromatic_compound 40.2 96 0.0021 26.6 6.4 51 44-95 173-226 (333)
430 PRK06172 short chain dehydroge 40.1 1.9E+02 0.0042 23.8 8.1 72 1-92 19-94 (253)
431 PRK04147 N-acetylneuraminate l 40.1 48 0.001 29.3 4.5 24 68-91 23-49 (293)
432 PRK08277 D-mannonate oxidoredu 40.0 1.5E+02 0.0033 24.9 7.5 72 1-92 22-97 (278)
433 COG0514 RecQ Superfamily II DN 40.0 61 0.0013 32.2 5.5 60 61-120 233-296 (590)
434 TIGR00706 SppA_dom signal pept 40.0 1.3E+02 0.0029 25.0 7.0 102 45-154 17-128 (207)
435 PRK06949 short chain dehydroge 39.9 1.8E+02 0.004 23.9 7.9 33 60-92 62-96 (258)
436 PLN03176 flavanone-3-hydroxyla 39.8 48 0.001 25.7 4.0 38 62-100 40-85 (120)
437 PF11113 Phage_head_chap: Head 39.8 28 0.0006 24.0 2.2 22 61-82 29-55 (56)
438 TIGR02356 adenyl_thiF thiazole 39.7 61 0.0013 27.1 4.9 32 82-113 111-144 (202)
439 TIGR01769 GGGP geranylgeranylg 39.7 84 0.0018 26.9 5.7 42 69-110 11-58 (205)
440 TIGR00129 fdhD_narQ formate de 39.6 1.5E+02 0.0033 25.7 7.4 59 61-119 145-208 (237)
441 PRK07370 enoyl-(acyl carrier p 39.6 2.2E+02 0.0047 24.0 8.4 32 61-92 64-97 (258)
442 PRK08642 fabG 3-ketoacyl-(acyl 39.5 1.7E+02 0.0037 24.0 7.5 72 1-92 17-91 (253)
443 PRK09468 ompR osmolarity respo 39.4 2.1E+02 0.0045 23.2 8.6 72 44-116 36-110 (239)
444 PF03599 CdhD: CO dehydrogenas 39.3 55 0.0012 30.8 4.9 44 69-114 84-130 (386)
445 PRK08217 fabG 3-ketoacyl-(acyl 39.3 1.9E+02 0.0042 23.5 7.9 72 1-92 17-92 (253)
446 PRK10643 DNA-binding transcrip 39.2 1.9E+02 0.0041 22.7 8.2 48 45-93 32-82 (222)
447 cd00755 YgdL_like Family of ac 39.1 92 0.002 26.9 6.0 30 57-87 102-132 (231)
448 PF03102 NeuB: NeuB family; I 39.1 48 0.001 29.0 4.2 37 63-99 93-130 (241)
449 cd06284 PBP1_LacI_like_6 Ligan 39.1 2.1E+02 0.0046 23.3 8.9 32 53-87 51-82 (267)
450 cd05211 NAD_bind_Glu_Leu_Phe_V 39.0 1E+02 0.0022 26.3 6.3 105 1-116 34-152 (217)
451 PRK15461 NADH-dependent gamma- 39.0 2.2E+02 0.0047 25.1 8.5 23 1-24 12-34 (296)
452 PRK06180 short chain dehydroge 39.0 1.9E+02 0.0042 24.5 8.0 71 1-92 16-88 (277)
453 PRK05458 guanosine 5'-monophos 38.9 1E+02 0.0022 28.3 6.4 51 58-110 112-166 (326)
454 TIGR03023 WcaJ_sugtrans Undeca 38.8 1.9E+02 0.004 27.0 8.4 79 2-88 140-224 (451)
455 COG0460 ThrA Homoserine dehydr 38.8 1.6E+02 0.0035 27.2 7.8 65 56-122 77-149 (333)
456 cd08301 alcohol_DH_plants Plan 38.8 1.2E+02 0.0027 27.0 7.0 34 57-91 257-292 (369)
457 cd00740 MeTr MeTr subgroup of 38.6 1E+02 0.0023 26.9 6.3 50 61-112 73-126 (252)
458 PF01116 F_bP_aldolase: Fructo 38.6 70 0.0015 28.7 5.3 53 58-110 17-78 (287)
459 TIGR00640 acid_CoA_mut_C methy 38.4 1.9E+02 0.0042 22.6 12.6 69 47-118 43-118 (132)
460 PRK07231 fabG 3-ketoacyl-(acyl 38.3 1.9E+02 0.0042 23.5 7.7 72 1-92 17-91 (251)
461 TIGR00381 cdhD CO dehydrogenas 38.1 2E+02 0.0043 27.2 8.3 101 56-171 152-267 (389)
462 PRK05690 molybdopterin biosynt 38.0 49 0.0011 28.6 4.1 33 57-90 122-155 (245)
463 TIGR02915 PEP_resp_reg putativ 38.0 2E+02 0.0044 26.4 8.5 49 44-93 27-83 (445)
464 TIGR02685 pter_reduc_Leis pter 38.0 1.8E+02 0.0038 24.5 7.6 73 1-92 13-94 (267)
465 PRK13111 trpA tryptophan synth 37.8 1.2E+02 0.0027 26.6 6.7 46 70-116 105-155 (258)
466 TIGR01457 HAD-SF-IIA-hyp2 HAD- 37.7 93 0.002 26.7 5.8 51 70-120 21-77 (249)
467 PRK07097 gluconate 5-dehydroge 37.7 2.3E+02 0.0049 23.8 8.2 72 1-92 22-97 (265)
468 PRK12481 2-deoxy-D-gluconate 3 37.7 2.3E+02 0.005 23.6 8.2 72 1-92 20-93 (251)
469 PRK13394 3-hydroxybutyrate deh 37.7 2.2E+02 0.0048 23.4 8.0 72 1-92 19-94 (262)
470 PRK06171 sorbitol-6-phosphate 37.5 2.4E+02 0.0053 23.5 9.0 32 61-92 54-87 (266)
471 TIGR03022 WbaP_sugtrans Undeca 37.4 2.3E+02 0.0049 26.5 8.8 75 2-83 137-216 (456)
472 PF04055 Radical_SAM: Radical 37.4 78 0.0017 23.7 4.8 35 68-102 126-164 (166)
473 PRK00724 formate dehydrogenase 37.4 1.7E+02 0.0036 25.8 7.5 58 63-120 176-238 (263)
474 cd06307 PBP1_uncharacterized_s 37.4 1.7E+02 0.0037 24.3 7.4 37 50-87 52-88 (275)
475 PRK14851 hypothetical protein; 37.3 62 0.0013 32.6 5.2 32 57-89 133-167 (679)
476 cd01483 E1_enzyme_family Super 37.3 87 0.0019 24.2 5.1 21 1-21 10-30 (143)
477 PRK13399 fructose-1,6-bisphosp 37.2 1.7E+02 0.0037 27.2 7.7 54 57-110 17-80 (347)
478 PRK05650 short chain dehydroge 37.1 2.2E+02 0.0048 23.9 8.1 72 1-92 12-87 (270)
479 PRK09140 2-dehydro-3-deoxy-6-p 37.1 1.9E+02 0.0042 24.4 7.6 62 56-118 34-96 (206)
480 PRK10161 transcriptional regul 37.1 2.2E+02 0.0047 22.8 8.7 72 45-117 34-110 (229)
481 cd06317 PBP1_ABC_sugar_binding 37.0 1.5E+02 0.0032 24.5 6.8 34 55-88 54-87 (275)
482 TIGR00465 ilvC ketol-acid redu 37.0 1.8E+02 0.0038 26.3 7.7 102 1-116 14-120 (314)
483 PLN02254 gibberellin 3-beta-di 37.0 55 0.0012 30.1 4.5 35 62-97 59-93 (358)
484 TIGR02875 spore_0_A sporulatio 37.0 1.5E+02 0.0033 24.8 7.0 68 45-112 36-108 (262)
485 cd08249 enoyl_reductase_like e 36.9 1.7E+02 0.0036 25.7 7.5 88 1-91 167-257 (339)
486 cd06389 PBP1_iGluR_AMPA_GluR2 36.9 2E+02 0.0043 26.0 8.1 55 45-100 164-223 (370)
487 TIGR02317 prpB methylisocitrat 36.8 3.1E+02 0.0068 24.6 10.3 57 56-118 173-235 (285)
488 cd01409 SIRT4 SIRT4: Eukaryoti 36.7 85 0.0018 27.5 5.5 54 57-110 180-236 (260)
489 cd06273 PBP1_GntR_like_1 This 36.7 2.4E+02 0.0052 23.2 9.8 33 53-87 51-83 (268)
490 PRK05872 short chain dehydroge 36.7 2E+02 0.0044 24.8 7.9 71 1-92 21-95 (296)
491 COG0561 Cof Predicted hydrolas 36.7 80 0.0017 26.8 5.3 46 67-113 21-67 (264)
492 cd01487 E1_ThiF_like E1_ThiF_l 36.6 75 0.0016 26.0 4.8 21 1-21 10-30 (174)
493 cd06366 PBP1_GABAb_receptor Li 36.6 2.4E+02 0.0053 24.6 8.5 49 44-93 179-231 (350)
494 TIGR02819 fdhA_non_GSH formald 36.6 1.1E+02 0.0025 28.0 6.5 84 2-90 198-301 (393)
495 PRK06914 short chain dehydroge 36.6 1.7E+02 0.0036 24.7 7.2 71 1-92 15-91 (280)
496 cd00946 FBP_aldolase_IIA Class 36.5 1.7E+02 0.0036 27.2 7.5 37 56-92 14-50 (345)
497 cd06365 PBP1_Pheromone_recepto 36.4 2.4E+02 0.0051 26.5 8.8 48 46-94 220-269 (469)
498 PRK12475 thiamine/molybdopteri 36.3 62 0.0013 29.5 4.7 33 56-89 115-148 (338)
499 PRK12815 carB carbamoyl phosph 36.3 2.7E+02 0.0058 29.6 9.8 79 6-89 582-660 (1068)
500 PLN03154 putative allyl alcoho 36.2 1.4E+02 0.003 26.7 6.9 88 1-90 171-260 (348)
No 1
>TIGR02130 dapB_plant dihydrodipicolinate reductase. This narrow family includes genes from Arabidopsis and Fibrobacter succinogenes (which probably recieved the gene from a plant via lateral gene transfer). The sequences are distantly related to the dihydrodipicolinate reductases from archaea. In Fibrobacter this gene is the only candidate DHPR in the genome.
Probab=100.00 E-value=4.2e-57 Score=397.65 Aligned_cols=211 Identities=63% Similarity=1.000 Sum_probs=189.5
Q ss_pred ChHHHHHHHHhCCCeEEEE-ecCCCccccccc-cccCceeEeecCCchhHHHhhhhcCCCCEEEEEcCChHHHHHHHHHH
Q 028115 1 MGKAVIKAADAAGLELVPV-SFGTEEESGQKV-EVCGKEIQVHGLSDRESVLASVFDKYPNMIVVDYTVPAAVNGNAELY 78 (213)
Q Consensus 1 MG~~i~~~~~~~~~elv~~-~~~~~~~~g~~~-~~~~~~v~i~~~~~~~~~l~~~~~~~~d~VvIDFS~p~~~~~~~~~~ 78 (213)
|||++++++.+++|+||++ +++. ..++++ ++.+.++++.+++|+...++++...++|+|+||||+|+++++|+++|
T Consensus 12 MG~~v~~av~~~~~~Lv~~~~~~~--~~~~~~~~~~g~~v~v~~~~~~~~~l~~~~~~~~d~VvIDFT~P~~~~~n~~~~ 89 (275)
T TIGR02130 12 MGKAVAEAADAAGLEIVPTSFGGE--EEAENEAEVAGKEILLHGPSEREARIGEVFAKYPELICIDYTHPSAVNDNAAFY 89 (275)
T ss_pred HHHHHHHHHhcCCCEEEeeEcccc--ccccchhhhcccceeeeccccccccHHHHHhhcCCEEEEECCChHHHHHHHHHH
Confidence 9999999998899999998 5543 244454 55666788877777777777766555887899999999999999999
Q ss_pred HhcCCCEEEEcCCCCHHHHHHHHHccCCcEEEccChhHHHHHHHHHHHHHHHhcCCCCCCCcEEEEeccCCCCCCchHHH
Q 028115 79 SKVGVPFVMGTTGGDRVRLHETIENSNVYAVISPQMGKQVVAFLAAMEIMAEQFPGAFSGYSLQVLESHQAGKLDTSGTA 158 (213)
Q Consensus 79 ~~~g~~~ViGTTG~~~~~~~~~~~~~~~~~v~a~N~SlGv~ll~~l~~~aa~~l~~~~~~~dieI~E~HH~~K~DaSGTA 158 (213)
.++|+|+|+|||||++++++++++++++|+|||||||+|+|+|++++++++++|+++|++||+||+|+||++|+|+||||
T Consensus 90 ~~~gv~~ViGTTG~~~~~~~~l~~~~~i~~l~apNfSiGv~ll~~~~~~aA~~~~~~f~~ydvEIiE~HH~~K~DaSGTA 169 (275)
T TIGR02130 90 GKHGIPFVMGTTGGDREALAKLVADAKHPAVIAPNMAKQIVAFLAAIEFLAEEFPGAFAGYKLEVMESHQASKADASGTA 169 (275)
T ss_pred HHCCCCEEEcCCCCCHHHHHHHHHhcCCCEEEECcccHHHHHHHHHHHHHHHhhccccCCCCEEEEEcCCCCCCCCCHHH
Confidence 99999999999999999999999988899999999999999999999999999987889999999999999999999999
Q ss_pred HHHHHHHHhcCCCcCcccccccCCCCCcccccCccCcccCCCceEEEEEeCCCCC
Q 028115 159 KAVISCFQKLGVSFDMDQIQMIRDPKQQLEMVGVPEEHLPGHAFHMYHLTSPDQT 213 (213)
Q Consensus 159 ~~la~~~~~~~~~~~~~~~~~~r~~~~~~r~g~i~geh~~G~~~htv~~~s~~~~ 213 (213)
++|++.++++++.|+|+++...|+++.++.+.++|++++.||++|||.|.|++++
T Consensus 170 ~~l~~~i~~~~~~~~~~~~~~~R~~~~~igi~siR~~~vgGh~~Htv~f~s~~e~ 224 (275)
T TIGR02130 170 KAVIGCFQKLGFDYDMDDIEKIRDEKEQIERMGVPEEHLGGHAFHLYHLDSADGT 224 (275)
T ss_pred HHHHHHHHHhCCccCcccccccCCCCCccceEEecCcccCCCccEEEEEecCCCe
Confidence 9999988778888999999999987778999999999999999999999999874
No 2
>PLN02775 Probable dihydrodipicolinate reductase
Probab=100.00 E-value=8.3e-56 Score=391.04 Aligned_cols=211 Identities=75% Similarity=1.107 Sum_probs=190.8
Q ss_pred ChHHHHHHHHhCCCeEEEEecCCCccccccc--cccCceeEeecCCchhHHHhhhhcCCCCEEEEEcCChHHHHHHHHHH
Q 028115 1 MGKAVIKAADAAGLELVPVSFGTEEESGQKV--EVCGKEIQVHGLSDRESVLASVFDKYPNMIVVDYTVPAAVNGNAELY 78 (213)
Q Consensus 1 MG~~i~~~~~~~~~elv~~~~~~~~~~g~~~--~~~~~~v~i~~~~~~~~~l~~~~~~~~d~VvIDFS~p~~~~~~~~~~ 78 (213)
||+++++++.+++++||++++..+ .|.++ ++.+.+++++.++|+++++.+.++.+||+|+||||+|+++++|+++|
T Consensus 23 MG~~~~~av~~~~~~Lv~~~~~~~--~~~~~~~~~~g~~v~~~~~~dl~~~l~~~~~~~~~~VvIDFT~P~a~~~~~~~~ 100 (286)
T PLN02775 23 MGHAVAEAAVSAGLQLVPVSFTGP--AGVGVTVEVCGVEVRLVGPSEREAVLSSVKAEYPNLIVVDYTLPDAVNDNAELY 100 (286)
T ss_pred HHHHHHHHHhcCCCEEEEEecccc--ccccccceeccceeeeecCccHHHHHHHhhccCCCEEEEECCChHHHHHHHHHH
Confidence 999999999889999999999654 22222 34445788887789999998776778997899999999999999999
Q ss_pred HhcCCCEEEEcCCCCHHHHHHHHHccCCcEEEccChhHHHHHHHHHHHHHHHhcCCCCCCCcEEEEeccCCCCCCchHHH
Q 028115 79 SKVGVPFVMGTTGGDRVRLHETIENSNVYAVISPQMGKQVVAFLAAMEIMAEQFPGAFSGYSLQVLESHQAGKLDTSGTA 158 (213)
Q Consensus 79 ~~~g~~~ViGTTG~~~~~~~~~~~~~~~~~v~a~N~SlGv~ll~~l~~~aa~~l~~~~~~~dieI~E~HH~~K~DaSGTA 158 (213)
+++|+|+|||||||+++++++++++.++|+|||||||+|+|+|++++++++++|+++|++||+||+|+||++|+|+||||
T Consensus 101 ~~~g~~~VvGTTG~~~e~l~~~~~~~~i~vv~apNfSiGv~ll~~l~~~aA~~l~~~f~~yDiEIiE~HH~~K~DaSGTA 180 (286)
T PLN02775 101 CKNGLPFVMGTTGGDRDRLLKDVEESGVYAVIAPQMGKQVVAFQAAMEIMAEQFPGAFSGYTLEVVESHQATKLDTSGTA 180 (286)
T ss_pred HHCCCCEEEECCCCCHHHHHHHHhcCCccEEEECcccHHHHHHHHHHHHHHHhcccccCCCCEEEEECCCCCCCCCcHHH
Confidence 99999999999999999999998876799999999999999999999999999987889999999999999999999999
Q ss_pred HHHHHHHHhcCCCcCcccccccCCCCCcccccCccCcccCCCceEEEEEeCCCCC
Q 028115 159 KAVISCFQKLGVSFDMDQIQMIRDPKQQLEMVGVPEEHLPGHAFHMYHLTSPDQT 213 (213)
Q Consensus 159 ~~la~~~~~~~~~~~~~~~~~~r~~~~~~r~g~i~geh~~G~~~htv~~~s~~~~ 213 (213)
++|++.+++++..|+++++...|++..|.|.++|+++++.||+.|||.|.|++++
T Consensus 181 ~~lae~i~~~g~~~~~~~~~~~R~~~~~~~~igi~~~~lRgg~~HtV~f~~~~E~ 235 (286)
T PLN02775 181 KAVISSFRKLGVSFDMDQIELIRDPKQQLEGVGVPEEHLNGHAFHTYRLTSPDGT 235 (286)
T ss_pred HHHHHHHHHhCCcccccccccccCccccccccceeeecccCCCcEEEEEecCCCe
Confidence 9999988778887878888788888889999999999999999999999999875
No 3
>COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism]
Probab=100.00 E-value=1.7e-51 Score=358.32 Aligned_cols=197 Identities=25% Similarity=0.335 Sum_probs=162.3
Q ss_pred ChHHHHHHHH-hCCCeEEEEecCCC-ccccccc-cc---cCceeEeecCCchhHHHhhhhcCCCCEEEEEcCChHHHHHH
Q 028115 1 MGKAVIKAAD-AAGLELVPVSFGTE-EESGQKV-EV---CGKEIQVHGLSDRESVLASVFDKYPNMIVVDYTVPAAVNGN 74 (213)
Q Consensus 1 MG~~i~~~~~-~~~~elv~~~~~~~-~~~g~~~-~~---~~~~v~i~~~~~~~~~l~~~~~~~~d~VvIDFS~p~~~~~~ 74 (213)
|||.+++++. .++++|++++++.+ ...|.|+ ++ ...++++.+ ++.. ....+| |+||||+|+++++|
T Consensus 14 MG~~ii~~v~~~~~~~L~aa~~~~~~~~~g~d~ge~~g~~~~gv~v~~--~~~~-----~~~~~D-V~IDFT~P~~~~~~ 85 (266)
T COG0289 14 MGRTLIRAVLEAPDLELVAAFDRPGSLSLGSDAGELAGLGLLGVPVTD--DLLL-----VKADAD-VLIDFTTPEATLEN 85 (266)
T ss_pred HHHHHHHHHhcCCCceEEEEEecCCccccccchhhhccccccCceeec--chhh-----cccCCC-EEEECCCchhhHHH
Confidence 9999999998 78999999999755 3556665 33 334677753 3322 124688 99999999999999
Q ss_pred HHHHHhcCCCEEEEcCCCCHHHHHHHHHccC-CcEEEccChhHHHHHHHHHHHHHHHhcCCCCCCCcEEEEeccCCCCCC
Q 028115 75 AELYSKVGVPFVMGTTGGDRVRLHETIENSN-VYAVISPQMGKQVVAFLAAMEIMAEQFPGAFSGYSLQVLESHQAGKLD 153 (213)
Q Consensus 75 ~~~~~~~g~~~ViGTTG~~~~~~~~~~~~~~-~~~v~a~N~SlGv~ll~~l~~~aa~~l~~~~~~~dieI~E~HH~~K~D 153 (213)
+++|+++++++|||||||++++++.+.+.++ +|+|+|||||+|||||++++++|+++| ++||+||+|+||++|+|
T Consensus 86 l~~~~~~~~~lVIGTTGf~~e~~~~l~~~a~~v~vv~a~NfSiGvnll~~l~~~aak~l----~~~DiEIiE~HHr~K~D 161 (266)
T COG0289 86 LEFALEHGKPLVIGTTGFTEEQLEKLREAAEKVPVVIAPNFSLGVNLLFKLAEQAAKVL----DDYDIEIIEAHHRHKKD 161 (266)
T ss_pred HHHHHHcCCCeEEECCCCCHHHHHHHHHHHhhCCEEEeccchHHHHHHHHHHHHHHHhc----CCCCEEehhhhcccCCC
Confidence 9999999999999999999999999998887 999999999999999999999999998 48999999999999999
Q ss_pred c-hHHHHHHHHHH-HhcCC------CcCcccccccCCCCCcccccCccCcccCCCceEEEEEeCCCC
Q 028115 154 T-SGTAKAVISCF-QKLGV------SFDMDQIQMIRDPKQQLEMVGVPEEHLPGHAFHMYHLTSPDQ 212 (213)
Q Consensus 154 a-SGTA~~la~~~-~~~~~------~~~~~~~~~~r~~~~~~r~g~i~geh~~G~~~htv~~~s~~~ 212 (213)
| ||||++|++.+ +.+++ .+.|+++++.|.+ ..+++-++|+..++| -|+|.|-+.++
T Consensus 162 APSGTAl~lae~ia~~~~~~~~~~~v~~r~G~~g~r~~-~~Igi~svR~G~ivG--~H~V~F~~~GE 225 (266)
T COG0289 162 APSGTALKLAEAIAEARGQDLKDEAVYGREGATGARKE-GEIGIHSVRGGDIVG--EHEVIFAGEGE 225 (266)
T ss_pred CCcHHHHHHHHHHHHhhccccccceeecccCCcCCCCC-CCceeEEeecCCcce--eEEEEEecCCc
Confidence 9 99999999976 44552 3578888888864 345555555566666 67777777665
No 4
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=100.00 E-value=2.4e-43 Score=309.28 Aligned_cols=198 Identities=26% Similarity=0.385 Sum_probs=159.3
Q ss_pred ChHHHHHHHH-hCCCeEEEEecC-CCccccccc-cccC---ceeEeecCCchhHHHhhhhcCCCCEEEEEcCChHHHHHH
Q 028115 1 MGKAVIKAAD-AAGLELVPVSFG-TEEESGQKV-EVCG---KEIQVHGLSDRESVLASVFDKYPNMIVVDYTVPAAVNGN 74 (213)
Q Consensus 1 MG~~i~~~~~-~~~~elv~~~~~-~~~~~g~~~-~~~~---~~v~i~~~~~~~~~l~~~~~~~~d~VvIDFS~p~~~~~~ 74 (213)
||+.+++.+. .++++|++++++ .+...++++ .+.+ .+++++ +|++++ . ..+| |+||||.|++..++
T Consensus 13 MG~~i~~~i~~~~~~elvav~d~~~~~~~~~~~~~~~~~~~~gv~~~--~d~~~l-~----~~~D-vVIdfT~p~~~~~~ 84 (266)
T TIGR00036 13 MGRELIKAALAAEGLQLVAAFERHGSSLQGTDAGELAGIGKVGVPVT--DDLEAV-E----TDPD-VLIDFTTPEGVLNH 84 (266)
T ss_pred HHHHHHHHHHhCCCCEEEEEEecCCccccCCCHHHhcCcCcCCceee--CCHHHh-c----CCCC-EEEECCChHHHHHH
Confidence 8999999998 689999999994 333345444 2222 345654 466653 1 3589 89999999999999
Q ss_pred HHHHHhcCCCEEEEcCCCCHHHHHHHHH---ccCCcEEEccChhHHHHHHHHHHHHHHHhcCCCCCCCcEEEEeccCCCC
Q 028115 75 AELYSKVGVPFVMGTTGGDRVRLHETIE---NSNVYAVISPQMGKQVVAFLAAMEIMAEQFPGAFSGYSLQVLESHQAGK 151 (213)
Q Consensus 75 ~~~~~~~g~~~ViGTTG~~~~~~~~~~~---~~~~~~v~a~N~SlGv~ll~~l~~~aa~~l~~~~~~~dieI~E~HH~~K 151 (213)
++.|+++|+|+|+|||||+.++.+++.+ ++++|+++|||||+|+|+|++++++++++| ++||+||+|+||++|
T Consensus 85 ~~~al~~g~~vVigttg~~~e~~~~l~~aA~~~g~~v~~a~NfSlGv~ll~~~~~~aa~~l----~~~dieI~E~HH~~K 160 (266)
T TIGR00036 85 LKFALEHGVRLVVGTTGFSEEDKQELADLAEKAGIAAVIAPNFSIGVNLMFKLLEKAAKYL----GDYDIEIIELHHRHK 160 (266)
T ss_pred HHHHHHCCCCEEEECCCCCHHHHHHHHHHHhcCCccEEEECcccHHHHHHHHHHHHHHHhc----cCCCEEeeeeccCCC
Confidence 9999999999999999999877666654 445999999999999999999999999988 479999999999999
Q ss_pred CCc-hHHHHHHHHHHH-hcCC------CcCcccccccCCCCCcccccCccCcccCCCceEEEEEeCCCCC
Q 028115 152 LDT-SGTAKAVISCFQ-KLGV------SFDMDQIQMIRDPKQQLEMVGVPEEHLPGHAFHMYHLTSPDQT 213 (213)
Q Consensus 152 ~Da-SGTA~~la~~~~-~~~~------~~~~~~~~~~r~~~~~~r~g~i~geh~~G~~~htv~~~s~~~~ 213 (213)
+|+ ||||++|++.+. .++. .++|++....|.+ ..+.+-++|++.++| .|||.|.+++++
T Consensus 161 ~DaPSGTA~~l~~~i~~~~~~~~~~~~~~~~~~~~~~r~~-~~i~i~s~R~g~i~g--~h~v~f~~~~e~ 227 (266)
T TIGR00036 161 KDAPSGTALKTAEMIAEARGERLKNVAVTEREGLTGERGR-EEIGIHAVRGGDVVG--EHTVMFAGDGER 227 (266)
T ss_pred CCCCCHHHHHHHHHHHHhhccccccCccccccCCcCCCCC-CccceEEEecCCceE--EEEEEEcCCCeE
Confidence 999 999999999774 3432 3456666566654 356677788888888 899999999874
No 5
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=100.00 E-value=5.2e-41 Score=292.95 Aligned_cols=195 Identities=26% Similarity=0.366 Sum_probs=155.2
Q ss_pred ChHHHHHHHH-hCCCeEEEEecCCCccccccccccCceeEeecCCchhHHHhhhhcCCCCEEEEEcCChHHHHHHHHHHH
Q 028115 1 MGKAVIKAAD-AAGLELVPVSFGTEEESGQKVEVCGKEIQVHGLSDRESVLASVFDKYPNMIVVDYTVPAAVNGNAELYS 79 (213)
Q Consensus 1 MG~~i~~~~~-~~~~elv~~~~~~~~~~g~~~~~~~~~v~i~~~~~~~~~l~~~~~~~~d~VvIDFS~p~~~~~~~~~~~ 79 (213)
||+.+++.+. .++++|+++++..+...... ...+++. .+|++++++ .+| |+||||.|+...++++.|+
T Consensus 13 mG~~i~~~l~~~~~~elvav~d~~~~~~~~~---~~~~i~~--~~dl~~ll~-----~~D-vVid~t~p~~~~~~~~~al 81 (257)
T PRK00048 13 MGRELIEAVEAAEDLELVAAVDRPGSPLVGQ---GALGVAI--TDDLEAVLA-----DAD-VLIDFTTPEATLENLEFAL 81 (257)
T ss_pred HHHHHHHHHHhCCCCEEEEEEecCCcccccc---CCCCccc--cCCHHHhcc-----CCC-EEEECCCHHHHHHHHHHHH
Confidence 8999999887 67899999998655322111 1123333 246666542 588 8999999999999999999
Q ss_pred hcCCCEEEEcCCCCHHHHHHHHHccC-CcEEEccChhHHHHHHHHHHHHHHHhcCCCCCCCcEEEEeccCCCCCCc-hHH
Q 028115 80 KVGVPFVMGTTGGDRVRLHETIENSN-VYAVISPQMGKQVVAFLAAMEIMAEQFPGAFSGYSLQVLESHQAGKLDT-SGT 157 (213)
Q Consensus 80 ~~g~~~ViGTTG~~~~~~~~~~~~~~-~~~v~a~N~SlGv~ll~~l~~~aa~~l~~~~~~~dieI~E~HH~~K~Da-SGT 157 (213)
++|+|+|+|||||+.++.+++.++++ +|++++||||+|+++++++++.+++.|+ + ||+||+|+||++|+|+ |||
T Consensus 82 ~~G~~vvigttG~s~~~~~~l~~aa~~~~v~~s~n~s~g~~~~~~l~~~aa~~l~---~-~d~ei~E~HH~~K~DaPSGT 157 (257)
T PRK00048 82 EHGKPLVIGTTGFTEEQLAELEEAAKKIPVVIAPNFSIGVNLLMKLAEKAAKYLG---D-YDIEIIEAHHRHKVDAPSGT 157 (257)
T ss_pred HcCCCEEEECCCCCHHHHHHHHHHhcCCCEEEECcchHHHHHHHHHHHHHHHhcC---C-CCEEEEEccCCCCCCCCCHH
Confidence 99999999999999999888887655 9999999999999999999999999885 4 9999999999999999 999
Q ss_pred HHHHHHHHHh-cCCCc------CcccccccCCCCCcccccCccCcccCCCceEEEEEeCCCCC
Q 028115 158 AKAVISCFQK-LGVSF------DMDQIQMIRDPKQQLEMVGVPEEHLPGHAFHMYHLTSPDQT 213 (213)
Q Consensus 158 A~~la~~~~~-~~~~~------~~~~~~~~r~~~~~~r~g~i~geh~~G~~~htv~~~s~~~~ 213 (213)
|++|++.+.+ ++..+ +|.+....|. ...+.+-++|++.++| .|+|.|.+++++
T Consensus 158 A~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~i~s~R~g~~~g--~h~v~f~~~~e~ 217 (257)
T PRK00048 158 ALKLAEAIAEARGRDLKEVAVYGREGATGARV-KGEIGIHSVRGGDIVG--EHEVIFAGDGER 217 (257)
T ss_pred HHHHHHHHHHhhcccccccceeccCCccCCcC-CCCccEEEEEcCCceE--EEEEEEecCCcE
Confidence 9999997743 54332 3333333332 2246666777788888 899999999874
No 6
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=99.93 E-value=1.5e-25 Score=176.06 Aligned_cols=106 Identities=35% Similarity=0.520 Sum_probs=86.2
Q ss_pred ChHHHHHHHH-hCCCeEEEEecCCC-ccccccc-cccC---ceeEeecCCchhHHHhhhhcCCCCEEEEEcCChHHHHHH
Q 028115 1 MGKAVIKAAD-AAGLELVPVSFGTE-EESGQKV-EVCG---KEIQVHGLSDRESVLASVFDKYPNMIVVDYTVPAAVNGN 74 (213)
Q Consensus 1 MG~~i~~~~~-~~~~elv~~~~~~~-~~~g~~~-~~~~---~~v~i~~~~~~~~~l~~~~~~~~d~VvIDFS~p~~~~~~ 74 (213)
|||+|++.+. .++++|++++++.+ ...|+|+ .+.+ .+++++ ++++++++ .+| |+||||+|+++.++
T Consensus 12 MG~~i~~~i~~~~~~~lv~~v~~~~~~~~g~d~g~~~~~~~~~~~v~--~~l~~~~~-----~~D-VvIDfT~p~~~~~~ 83 (124)
T PF01113_consen 12 MGRAIAEAILESPGFELVGAVDRKPSAKVGKDVGELAGIGPLGVPVT--DDLEELLE-----EAD-VVIDFTNPDAVYDN 83 (124)
T ss_dssp HHHHHHHHHHHSTTEEEEEEEETTTSTTTTSBCHHHCTSST-SSBEB--S-HHHHTT-----H-S-EEEEES-HHHHHHH
T ss_pred HHHHHHHHHHhcCCcEEEEEEecCCcccccchhhhhhCcCCcccccc--hhHHHhcc-----cCC-EEEEcCChHHhHHH
Confidence 8999999998 59999999999766 5778887 4433 366665 58877653 389 99999999999999
Q ss_pred HHHHHhcCCCEEEEcCCCCHHHHHHHHHccC-CcEEEccCh
Q 028115 75 AELYSKVGVPFVMGTTGGDRVRLHETIENSN-VYAVISPQM 114 (213)
Q Consensus 75 ~~~~~~~g~~~ViGTTG~~~~~~~~~~~~~~-~~~v~a~N~ 114 (213)
+++|+++|+|+|+|||||++++++.+.+.++ +|+||||||
T Consensus 84 ~~~~~~~g~~~ViGTTG~~~~~~~~l~~~a~~~~vl~a~Nf 124 (124)
T PF01113_consen 84 LEYALKHGVPLVIGTTGFSDEQIDELEELAKKIPVLIAPNF 124 (124)
T ss_dssp HHHHHHHT-EEEEE-SSSHHHHHHHHHHHTTTSEEEE-SSS
T ss_pred HHHHHhCCCCEEEECCCCCHHHHHHHHHHhccCCEEEeCCC
Confidence 9999999999999999999999999999776 999999998
No 7
>PF05173 DapB_C: Dihydrodipicolinate reductase, C-terminus; InterPro: IPR022663 This entry represents the C-terminal region of Dihydrodipicolinate reductase. Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 1YL6_B 1YL5_A 1YL7_C 1P9L_B 1C3V_B ....
Probab=99.85 E-value=6.8e-22 Score=157.65 Aligned_cols=91 Identities=23% Similarity=0.347 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCcEEEEeccCCCCCCc-hHHHHHHHHHHHh-cCCCcCcccccccCCCCCcccccCccC
Q 028115 117 QVVAFLAAMEIMAEQFPGAFSGYSLQVLESHQAGKLDT-SGTAKAVISCFQK-LGVSFDMDQIQMIRDPKQQLEMVGVPE 194 (213)
Q Consensus 117 Gv~ll~~l~~~aa~~l~~~~~~~dieI~E~HH~~K~Da-SGTA~~la~~~~~-~~~~~~~~~~~~~r~~~~~~r~g~i~g 194 (213)
|||||++++++++++|+ ++||+||+|+||++|+|+ ||||++|++.+.+ ++.... ......|.+.+.+.+-++|+
T Consensus 1 Gv~ll~~l~~~aa~~l~---~~~dieI~E~HH~~K~DaPSGTA~~la~~i~~~~~~~~~-~~~~~~~~~~~~i~v~s~R~ 76 (132)
T PF05173_consen 1 GVNLLMKLAKQAAKLLP---NGYDIEIIESHHRQKKDAPSGTALMLAESIAEARDRDLS-EVARGGREQENEIGVHSVRG 76 (132)
T ss_dssp HHHHHHHHHHHHHHHTT---TTSEEEEEEEE-TT-SSSS-HHHHHHHHHHHHHTTSEHH-HHEEECCGETTCEEEEEEE-
T ss_pred CHHHHHHHHHHHHHhcC---CCCCEEEEEcccCCCCCCCCHHHHHHHHHHHHhcCcccc-ccccccccCCccceEEEEEc
Confidence 89999999999999997 479999999999999999 9999999997754 433331 11123344566788888888
Q ss_pred cccCCCceEEEEEeCCCCC
Q 028115 195 EHLPGHAFHMYHLTSPDQT 213 (213)
Q Consensus 195 eh~~G~~~htv~~~s~~~~ 213 (213)
+.++| .|+|.|.+++++
T Consensus 77 g~i~G--~H~V~f~~~~E~ 93 (132)
T PF05173_consen 77 GGIVG--EHEVIFGSPGET 93 (132)
T ss_dssp TT--E--EEEEEEEETTEE
T ss_pred CCCCE--EEEEEEcCCCcE
Confidence 99999 999999999864
No 8
>PRK08374 homoserine dehydrogenase; Provisional
Probab=98.36 E-value=7.3e-07 Score=81.09 Aligned_cols=67 Identities=15% Similarity=-0.021 Sum_probs=62.0
Q ss_pred CCCEEEEEcCChHHHHHHHHHHHhcCCCEEEEcCC---CCHHHHHHHHHccCCcEEEccChhHHHHHHHHH
Q 028115 57 YPNMIVVDYTVPAAVNGNAELYSKVGVPFVMGTTG---GDRVRLHETIENSNVYAVISPQMGKQVVAFLAA 124 (213)
Q Consensus 57 ~~d~VvIDFS~p~~~~~~~~~~~~~g~~~ViGTTG---~~~~~~~~~~~~~~~~~v~a~N~SlGv~ll~~l 124 (213)
.+| |+||||.++.+.+++..+++.|+++|++++| +..+++.+++++.+.++++++|++.|+-++..+
T Consensus 91 ~~D-VvVd~t~~~~a~~~~~~al~~G~~VVtanK~~la~~~~el~~la~~~~~~~~~ea~v~~GiPii~~l 160 (336)
T PRK08374 91 DAD-IVVDVTNDKNAHEWHLEALKEGKSVVTSNKPPIAFHYDELLDLANERNLPYLFEATVMAGTPIIGLL 160 (336)
T ss_pred CCC-EEEECCCcHHHHHHHHHHHhhCCcEEECCHHHHHhCHHHHHHHHHHcCCeEEEeccccccCCchHHH
Confidence 578 8999999999999999999999999999999 778899999998889999999999999887654
No 9
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=98.34 E-value=6.8e-06 Score=72.28 Aligned_cols=108 Identities=18% Similarity=0.187 Sum_probs=74.3
Q ss_pred ChHHHHHHHH-hCCCeEEEEecCCCccccccccccCceeEeecCCchhHHHhhhhcCCCCEEEEEcCChHHHHHHHHHHH
Q 028115 1 MGKAVIKAAD-AAGLELVPVSFGTEEESGQKVEVCGKEIQVHGLSDRESVLASVFDKYPNMIVVDYTVPAAVNGNAELYS 79 (213)
Q Consensus 1 MG~~i~~~~~-~~~~elv~~~~~~~~~~g~~~~~~~~~v~i~~~~~~~~~l~~~~~~~~d~VvIDFS~p~~~~~~~~~~~ 79 (213)
||+.+++.+. .++++|+++.+.... ........+.+++++ .|+++. ..++| ++|++|.|....++...|+
T Consensus 12 iG~~~~~~l~~~~~~~l~~v~~~~~~-~~~~~~~~~~~~~~~--~d~~~l-----~~~~D-vVve~t~~~~~~e~~~~aL 82 (265)
T PRK13303 12 IGAAVLELLEHDPDLRVDWVIVPEHS-IDAVRRALGEAVRVV--SSVDAL-----PQRPD-LVVECAGHAALKEHVVPIL 82 (265)
T ss_pred HHHHHHHHHhhCCCceEEEEEEcCCC-HHHHhhhhccCCeee--CCHHHh-----ccCCC-EEEECCCHHHHHHHHHHHH
Confidence 7999999987 578999988753221 111111111134443 355543 24689 8999999999999999999
Q ss_pred hcCCCEEEEcCC-CCH----HHHHHHHHccCCcEEEccChhHHH
Q 028115 80 KVGVPFVMGTTG-GDR----VRLHETIENSNVYAVISPQMGKQV 118 (213)
Q Consensus 80 ~~g~~~ViGTTG-~~~----~~~~~~~~~~~~~~v~a~N~SlGv 118 (213)
++|+++|+.++| +++ +++.+++++++..+.+ ++.++|.
T Consensus 83 ~aGk~Vvi~s~~Al~d~~~~~~L~~~A~~~g~~l~v-~sga~gg 125 (265)
T PRK13303 83 KAGIDCAVISVGALADEALRERLEQAAEAGGARLHL-LSGAIGG 125 (265)
T ss_pred HcCCCEEEeChHHhcCHHHHHHHHHHHHHCCCEEEE-eChHhhC
Confidence 999999999999 542 3456667666676555 6666666
No 10
>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....
Probab=97.65 E-value=0.00011 Score=56.37 Aligned_cols=102 Identities=19% Similarity=0.183 Sum_probs=66.2
Q ss_pred ChHHHHHHHH-hC---CCeEEEEecCCCccccccc-cccCceeEeecCCchhHHHhhhhcCCCCEEEEEcCChHHHHHHH
Q 028115 1 MGKAVIKAAD-AA---GLELVPVSFGTEEESGQKV-EVCGKEIQVHGLSDRESVLASVFDKYPNMIVVDYTVPAAVNGNA 75 (213)
Q Consensus 1 MG~~i~~~~~-~~---~~elv~~~~~~~~~~g~~~-~~~~~~v~i~~~~~~~~~l~~~~~~~~d~VvIDFS~p~~~~~~~ 75 (213)
||+.+++.+. .+ ++++++..++. .....+. ...+ ...+ ..++++.++.. .+| |+||-|.++.+.+++
T Consensus 5 VG~~l~~~l~~~~~~~~~~v~~v~~~~-~~~~~~~~~~~~-~~~~--~~~~~~~~~~~---~~d-vvVE~t~~~~~~~~~ 76 (117)
T PF03447_consen 5 VGRGLLEQLKEQQERIDLEVVGVADRS-MLISKDWAASFP-DEAF--TTDLEELIDDP---DID-VVVECTSSEAVAEYY 76 (117)
T ss_dssp HHHHHHHHHHHTHHHCEEEEEEEEESS-EEEETTHHHHHT-HSCE--ESSHHHHHTHT---T-S-EEEE-SSCHHHHHHH
T ss_pred HHHHHHHHHHhCcccCCEEEEEEEECC-chhhhhhhhhcc-cccc--cCCHHHHhcCc---CCC-EEEECCCchHHHHHH
Confidence 6899999987 33 89999988876 2222211 1111 1122 24677766432 578 999999999999999
Q ss_pred HHHHhcCCCEEEEcCCCCH--H---HHHHHHHccCCcEEE
Q 028115 76 ELYSKVGVPFVMGTTGGDR--V---RLHETIENSNVYAVI 110 (213)
Q Consensus 76 ~~~~~~g~~~ViGTTG~~~--~---~~~~~~~~~~~~~v~ 110 (213)
+.++++|+++|+...|--. . ++.+++++.+..+.+
T Consensus 77 ~~~L~~G~~VVt~nk~ala~~~~~~~L~~~A~~~g~~~~~ 116 (117)
T PF03447_consen 77 EKALERGKHVVTANKGALADEALYEELREAARKNGVRIYY 116 (117)
T ss_dssp HHHHHTTCEEEES-HHHHHSHHHHHHHHHHHHHHT-EEEE
T ss_pred HHHHHCCCeEEEECHHHhhhHHHHHHHHHHHHHcCCEEEe
Confidence 9999999999998887433 3 455556555555543
No 11
>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=97.33 E-value=0.00065 Score=62.00 Aligned_cols=82 Identities=30% Similarity=0.354 Sum_probs=57.4
Q ss_pred ChHHHHHHHH-hCCCeEEEEecCCCcc-------ccccc--------c-ccCceeEeecCCchhHHHhhhhcCCCCEEEE
Q 028115 1 MGKAVIKAAD-AAGLELVPVSFGTEEE-------SGQKV--------E-VCGKEIQVHGLSDRESVLASVFDKYPNMIVV 63 (213)
Q Consensus 1 MG~~i~~~~~-~~~~elv~~~~~~~~~-------~g~~~--------~-~~~~~v~i~~~~~~~~~l~~~~~~~~d~VvI 63 (213)
|||.+++++. +++++|+++.+..+.. .|.++ . ..+.++.+. .++++.+ ..+| ++|
T Consensus 12 IGr~va~al~~~~d~eLvav~d~~~~~~~~la~~~G~~~~~~~~~~~~~~~~~~i~V~--~~~~el~-----~~vD-VVI 83 (341)
T PRK04207 12 IGKRVADAVAAQPDMELVGVAKTKPDYEARVAVEKGYPLYVADPEREKAFEEAGIPVA--GTIEDLL-----EKAD-IVV 83 (341)
T ss_pred HHHHHHHHHhcCCCcEEEEEECCChHHHHHHHHhcCCCccccCccccccccCCceEEc--CChhHhh-----ccCC-EEE
Confidence 7999999987 7899999998854311 12111 0 112245553 2444433 2578 899
Q ss_pred EcCChHHHHHHHHHHHhcCCCEEEEcC
Q 028115 64 DYTVPAAVNGNAELYSKVGVPFVMGTT 90 (213)
Q Consensus 64 DFS~p~~~~~~~~~~~~~g~~~ViGTT 90 (213)
|||.+....++.+.|+++|+++|+-..
T Consensus 84 daT~~~~~~e~a~~~~~aGk~VI~~~~ 110 (341)
T PRK04207 84 DATPGGVGAKNKELYEKAGVKAIFQGG 110 (341)
T ss_pred ECCCchhhHHHHHHHHHCCCEEEEcCC
Confidence 999999999999999999988887443
No 12
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=97.32 E-value=0.0027 Score=55.77 Aligned_cols=108 Identities=13% Similarity=0.107 Sum_probs=72.2
Q ss_pred ChHHHHHHHHh-C-CCeEEEEecCCCccccccccccCceeEeecCCchhHHHhhhhcCCCCEEEEEcCChHHHHHHHHHH
Q 028115 1 MGKAVIKAADA-A-GLELVPVSFGTEEESGQKVEVCGKEIQVHGLSDRESVLASVFDKYPNMIVVDYTVPAAVNGNAELY 78 (213)
Q Consensus 1 MG~~i~~~~~~-~-~~elv~~~~~~~~~~g~~~~~~~~~v~i~~~~~~~~~l~~~~~~~~d~VvIDFS~p~~~~~~~~~~ 78 (213)
||+.+++.+.+ . ++++++++++.+....+... ..+...+ .++++.+ ..+| +||+.+.|+...+++..+
T Consensus 12 iG~~ia~~l~~~~~~~elv~v~d~~~~~a~~~a~--~~~~~~~--~~~~ell-----~~~D-vVvi~a~~~~~~~~~~~a 81 (265)
T PRK13304 12 IASLITKAILSGRINAELYAFYDRNLEKAENLAS--KTGAKAC--LSIDELV-----EDVD-LVVECASVNAVEEVVPKS 81 (265)
T ss_pred HHHHHHHHHHcCCCCeEEEEEECCCHHHHHHHHH--hcCCeeE--CCHHHHh-----cCCC-EEEEcCChHHHHHHHHHH
Confidence 78889988874 3 79999988865532111111 1123333 3566544 2688 899999999999999999
Q ss_pred HhcCCCEEEEcCCC--CHH---HHHHHHHccCCcEEEccChhHHH
Q 028115 79 SKVGVPFVMGTTGG--DRV---RLHETIENSNVYAVISPQMGKQV 118 (213)
Q Consensus 79 ~~~g~~~ViGTTG~--~~~---~~~~~~~~~~~~~v~a~N~SlGv 118 (213)
+++|+++|+.++|- +.+ ++.+++++.+..+.+.+-.-.|.
T Consensus 82 l~~Gk~Vvv~s~gAl~d~~~~~~L~~aA~~~g~~l~v~sga~~g~ 126 (265)
T PRK13304 82 LENGKDVIIMSVGALADKELFLKLYKLAKENNCKIYLPSGAIVGL 126 (265)
T ss_pred HHcCCCEEEEchHHhcCHHHHHHHHHHHHHcCCEEEEeCchHHhH
Confidence 99999999998874 443 45555666666666654333333
No 13
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=96.86 E-value=0.012 Score=52.04 Aligned_cols=110 Identities=15% Similarity=0.131 Sum_probs=75.3
Q ss_pred ChHHHHHHHHh--CCCeEEEEecCCCccccccccccCceeEeecCCchhHHHhhhhcCCCCEEEEEcCChHHHHHHHHHH
Q 028115 1 MGKAVIKAADA--AGLELVPVSFGTEEESGQKVEVCGKEIQVHGLSDRESVLASVFDKYPNMIVVDYTVPAAVNGNAELY 78 (213)
Q Consensus 1 MG~~i~~~~~~--~~~elv~~~~~~~~~~g~~~~~~~~~v~i~~~~~~~~~l~~~~~~~~d~VvIDFS~p~~~~~~~~~~ 78 (213)
||+.+++.+.+ ++++|++..++.++..-+.....+. ... ..++++.+ ..+| +||..+.++...++...+
T Consensus 17 IG~~~a~~L~~~~~~~el~aV~dr~~~~a~~~a~~~g~-~~~--~~~~eell-----~~~D-~Vvi~tp~~~h~e~~~~a 87 (271)
T PRK13302 17 IGKAIAQALDRGLPGLTLSAVAVRDPQRHADFIWGLRR-PPP--VVPLDQLA-----THAD-IVVEAAPASVLRAIVEPV 87 (271)
T ss_pred HHHHHHHHHHhcCCCeEEEEEECCCHHHHHHHHHhcCC-Ccc--cCCHHHHh-----cCCC-EEEECCCcHHHHHHHHHH
Confidence 68888888863 6899998888654221110010010 112 13566643 2578 899999999999999999
Q ss_pred HhcCCCEEEEcCC-C-CHHHHHHHHHccCCcEEEccChhHHHH
Q 028115 79 SKVGVPFVMGTTG-G-DRVRLHETIENSNVYAVISPQMGKQVV 119 (213)
Q Consensus 79 ~~~g~~~ViGTTG-~-~~~~~~~~~~~~~~~~v~a~N~SlGv~ 119 (213)
+++|+++++-++| + ..+++.+.+++.+.++.+.+.|--|.-
T Consensus 88 L~aGk~Vi~~s~gal~~~~~L~~~A~~~g~~l~v~sGa~~g~d 130 (271)
T PRK13302 88 LAAGKKAIVLSVGALLRNEDLIDLARQNGGQIIVPTGALLGLD 130 (271)
T ss_pred HHcCCcEEEecchhHHhHHHHHHHHHHcCCEEEEcchHHHhHH
Confidence 9999999998777 3 234666677777788888877776653
No 14
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=96.72 E-value=0.015 Score=51.76 Aligned_cols=105 Identities=16% Similarity=0.217 Sum_probs=69.2
Q ss_pred ChHHHHHHHHh---CCCeEEEEecCCCccccccccccCceeEeecCCchhHHHhhhhcCCCCEEEEEcCChHHHHHHHHH
Q 028115 1 MGKAVIKAADA---AGLELVPVSFGTEEESGQKVEVCGKEIQVHGLSDRESVLASVFDKYPNMIVVDYTVPAAVNGNAEL 77 (213)
Q Consensus 1 MG~~i~~~~~~---~~~elv~~~~~~~~~~g~~~~~~~~~v~i~~~~~~~~~l~~~~~~~~d~VvIDFS~p~~~~~~~~~ 77 (213)
||+.|++.+.. .+++|++..++.+... + .+.+. +++ ..++++.+ ...|| +||+.-+|+++.++...
T Consensus 13 IG~~va~~l~~~~~~~~~l~~V~~~~~~~~-~--~~~~~-~~~--~~~l~~ll----~~~~D-lVVE~A~~~av~e~~~~ 81 (267)
T PRK13301 13 IASDVAAGLLADAAQPCQLAALTRNAADLP-P--ALAGR-VAL--LDGLPGLL----AWRPD-LVVEAAGQQAIAEHAEG 81 (267)
T ss_pred HHHHHHHHHhcCCCCceEEEEEecCCHHHH-H--Hhhcc-Ccc--cCCHHHHh----hcCCC-EEEECCCHHHHHHHHHH
Confidence 68899998863 3488998766543110 0 11111 222 24566643 24799 89999999999999999
Q ss_pred HHhcCCCEEEEcCC-CCH----HHHHHHHHccCCcEEEccChhHH
Q 028115 78 YSKVGVPFVMGTTG-GDR----VRLHETIENSNVYAVISPQMGKQ 117 (213)
Q Consensus 78 ~~~~g~~~ViGTTG-~~~----~~~~~~~~~~~~~~v~a~N~SlG 117 (213)
++++|+.+|+.++| |.+ +++.+.+++.+.-+.+. .=+||
T Consensus 82 iL~~g~dlvv~SvGALaD~~~~~~l~~~A~~~g~~i~ip-SGAig 125 (267)
T PRK13301 82 CLTAGLDMIICSAGALADDALRARLIAAAEAGGARIRVP-AGAIA 125 (267)
T ss_pred HHhcCCCEEEEChhHhcCHHHHHHHHHHHHhCCCEEEEe-ChHHH
Confidence 99999999999999 443 24455555555555554 43443
No 15
>PRK06270 homoserine dehydrogenase; Provisional
Probab=96.65 E-value=0.0089 Score=54.46 Aligned_cols=120 Identities=17% Similarity=0.149 Sum_probs=74.5
Q ss_pred ChHHHHHHHH-hC---------CCeEEEEecCCCc---cccccc----ccc-Cce-eEee----cCCchhHHHhhhhcCC
Q 028115 1 MGKAVIKAAD-AA---------GLELVPVSFGTEE---ESGQKV----EVC-GKE-IQVH----GLSDRESVLASVFDKY 57 (213)
Q Consensus 1 MG~~i~~~~~-~~---------~~elv~~~~~~~~---~~g~~~----~~~-~~~-v~i~----~~~~~~~~l~~~~~~~ 57 (213)
||+.+++.+. .+ +++|+++.++... .-|.+. ... ..+ +..+ ...++++.+.+ ..
T Consensus 13 VG~~~~~~L~~~~~~~~~~~g~~~~vvai~d~~~~~~~~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~d~~ell~~---~~ 89 (341)
T PRK06270 13 VGQGVAELLAEKREYLKKRYGLDLKVVAIADSSGSAIDPDGLDLELALKVKEETGKLADYPEGGGEISGLEVIRS---VD 89 (341)
T ss_pred HHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCCcccCcCCCCHHHHHHHHhccCCcccCccccccCCHHHHhhc---cC
Confidence 6888888876 32 6899998885321 112111 000 001 1111 12366666542 35
Q ss_pred CCEEEEEcCCh-----HHHHHHHHHHHhcCCCEEEEcCCCC---HHHHHHHHHccCCcEEEccChhHHHHHHHHH
Q 028115 58 PNMIVVDYTVP-----AAVNGNAELYSKVGVPFVMGTTGGD---RVRLHETIENSNVYAVISPQMGKQVVAFLAA 124 (213)
Q Consensus 58 ~d~VvIDFS~p-----~~~~~~~~~~~~~g~~~ViGTTG~~---~~~~~~~~~~~~~~~v~a~N~SlGv~ll~~l 124 (213)
+| |+||-|-+ +...++++.|+++|+++|+++.+.. .+++.+++++.+..+.+-+...-|.-++..+
T Consensus 90 ~D-vVvd~T~s~~~~~~~a~~~~~~aL~~GkhVVtaNK~pla~~~~eL~~~A~~~g~~~~~ea~v~~glPii~~l 163 (341)
T PRK06270 90 AD-VVVEATPTNIETGEPALSHCRKALERGKHVVTSNKGPLALAYKELKELAKKNGVRFRYEATVGGAMPIINLA 163 (341)
T ss_pred CC-EEEECCcCcccccchHHHHHHHHHHCCCEEEcCCcHHHHhhHHHHHHHHHHcCCEEEEeeeeeechhHHHHH
Confidence 78 89997754 3468899999999999999988764 3567777777778787766555555554443
No 16
>TIGR03855 NAD_NadX aspartate dehydrogenase. Members of this protein family are L-aspartate dehydrogenase, as shown for the NADP-dependent enzyme TM_1643 of Thermotoga maritima. Members lack homology to NadB, the aspartate oxidase (EC 1.4.3.16) of most mesophilic bacteria (described by TIGR00551), which this enzyme replaces in the generation of oxaloacetate from aspartate for the NAD biosynthetic pathway. All members of the seed alignment are found adjacent to other genes of NAD biosynthesis, although other uses of L-aspartate dehydrogenase may occur.
Probab=96.04 E-value=0.074 Score=46.15 Aligned_cols=98 Identities=24% Similarity=0.234 Sum_probs=67.4
Q ss_pred CCeEEEEecCCCccccccc-cccCceeEeecCCchhHHHhhhhcCCCCEEEEEcCChHHHHHHHHHHHhcCCCEEEEcCC
Q 028115 13 GLELVPVSFGTEEESGQKV-EVCGKEIQVHGLSDRESVLASVFDKYPNMIVVDYTVPAAVNGNAELYSKVGVPFVMGTTG 91 (213)
Q Consensus 13 ~~elv~~~~~~~~~~g~~~-~~~~~~v~i~~~~~~~~~l~~~~~~~~d~VvIDFS~p~~~~~~~~~~~~~g~~~ViGTTG 91 (213)
+++|++..|..++.. +.+ .. .+++++ .++++.++ ..+| +|+.-|.+....++...++++|+++++-++|
T Consensus 1 ~~eLvaV~D~~~e~a-~~~a~~--~g~~~~--~d~~eLl~----~~vD-aVviatp~~~H~e~a~~aL~aGkhVl~~s~g 70 (229)
T TIGR03855 1 NFEIAAVYDRNPKDA-KELAER--CGAKIV--SDFDEFLP----EDVD-IVVEAASQEAVKEYAEKILKNGKDLLIMSVG 70 (229)
T ss_pred CeEEEEEECCCHHHH-HHHHHH--hCCceE--CCHHHHhc----CCCC-EEEECCChHHHHHHHHHHHHCCCCEEEECCc
Confidence 468888888654221 111 11 123343 46666553 3688 8999999999999999999999999999888
Q ss_pred -C-CHH---HHHHHHHccCCcEEEccChhHHHHH
Q 028115 92 -G-DRV---RLHETIENSNVYAVISPQMGKQVVA 120 (213)
Q Consensus 92 -~-~~~---~~~~~~~~~~~~~v~a~N~SlGv~l 120 (213)
+ +.+ ++.+++++++.++.+.+.+--|...
T Consensus 71 Alad~e~~~~l~~aA~~~g~~l~i~sGai~g~d~ 104 (229)
T TIGR03855 71 ALADRELRERLREVARSSGRKVYIPSGAIGGLDA 104 (229)
T ss_pred ccCCHHHHHHHHHHHHhcCCEEEEChHHHHHHHH
Confidence 3 333 4556666777888888766555433
No 17
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=95.79 E-value=0.15 Score=44.77 Aligned_cols=107 Identities=21% Similarity=0.211 Sum_probs=69.1
Q ss_pred ChHHHHHHHHh--CCCeEEEEecCCCccccccc-cccCceeEeecCCchhHHHhhhhcCCCCEEEEEcCChHHHHHHHHH
Q 028115 1 MGKAVIKAADA--AGLELVPVSFGTEEESGQKV-EVCGKEIQVHGLSDRESVLASVFDKYPNMIVVDYTVPAAVNGNAEL 77 (213)
Q Consensus 1 MG~~i~~~~~~--~~~elv~~~~~~~~~~g~~~-~~~~~~v~i~~~~~~~~~l~~~~~~~~d~VvIDFS~p~~~~~~~~~ 77 (213)
.|+.+.+.+.+ .++|+++..|+..+..-... .+.+.. .+++++.+ ..+| ++|.-.+|+++.+++..
T Consensus 11 IG~~l~e~v~~~~~~~e~v~v~D~~~ek~~~~~~~~~~~~-----~s~ide~~-----~~~D-lvVEaAS~~Av~e~~~~ 79 (255)
T COG1712 11 IGKFLLELVRDGRVDFELVAVYDRDEEKAKELEASVGRRC-----VSDIDELI-----AEVD-LVVEAASPEAVREYVPK 79 (255)
T ss_pred HHHHHHHHHhcCCcceeEEEEecCCHHHHHHHHhhcCCCc-----cccHHHHh-----hccc-eeeeeCCHHHHHHHhHH
Confidence 37888888873 47999999886543211111 111111 13555544 3678 89999999999999999
Q ss_pred HHhcCCCEEEEcCC-CCHHHH-HHHHHccC-C-cEEEccChhHHH
Q 028115 78 YSKVGVPFVMGTTG-GDRVRL-HETIENSN-V-YAVISPQMGKQV 118 (213)
Q Consensus 78 ~~~~g~~~ViGTTG-~~~~~~-~~~~~~~~-~-~~v~a~N~SlGv 118 (213)
++++|+++++=++| |.++.+ +++.+.++ . .=++-|.=++|-
T Consensus 80 ~L~~g~d~iV~SVGALad~~l~erl~~lak~~~~rv~~pSGAiGG 124 (255)
T COG1712 80 ILKAGIDVIVMSVGALADEGLRERLRELAKCGGARVYLPSGAIGG 124 (255)
T ss_pred HHhcCCCEEEEechhccChHHHHHHHHHHhcCCcEEEecCccchh
Confidence 99999999999999 554433 33433333 2 224555555553
No 18
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=95.67 E-value=0.046 Score=41.10 Aligned_cols=99 Identities=19% Similarity=0.130 Sum_probs=66.2
Q ss_pred hHHHHHHHH-h-CCCeEEEEecCCCccccccccccCceeEeecCCchhHHHhhhhcCCCCEEEEEcCChHHHHHHHHHHH
Q 028115 2 GKAVIKAAD-A-AGLELVPVSFGTEEESGQKVEVCGKEIQVHGLSDRESVLASVFDKYPNMIVVDYTVPAAVNGNAELYS 79 (213)
Q Consensus 2 G~~i~~~~~-~-~~~elv~~~~~~~~~~g~~~~~~~~~v~i~~~~~~~~~l~~~~~~~~d~VvIDFS~p~~~~~~~~~~~ 79 (213)
|+.-.+.+. . +++++++..++.+.... .+ ....+++.+ +|.++.++. .++| +++-.|.+..=.+.+..|+
T Consensus 12 g~~~~~~~~~~~~~~~v~~v~d~~~~~~~-~~-~~~~~~~~~--~~~~~ll~~---~~~D-~V~I~tp~~~h~~~~~~~l 83 (120)
T PF01408_consen 12 GRRHLRALLRSSPDFEVVAVCDPDPERAE-AF-AEKYGIPVY--TDLEELLAD---EDVD-AVIIATPPSSHAEIAKKAL 83 (120)
T ss_dssp HHHHHHHHHHTTTTEEEEEEECSSHHHHH-HH-HHHTTSEEE--SSHHHHHHH---TTES-EEEEESSGGGHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCcEEEEEEeCCHHHHH-HH-HHHhcccch--hHHHHHHHh---hcCC-EEEEecCCcchHHHHHHHH
Confidence 556666665 4 78999999887653211 11 001134454 478887754 3688 8999999999999999999
Q ss_pred hcCCCEEEEcCC-CCHHHHHHH---HHccCCcE
Q 028115 80 KVGVPFVMGTTG-GDRVRLHET---IENSNVYA 108 (213)
Q Consensus 80 ~~g~~~ViGTTG-~~~~~~~~~---~~~~~~~~ 108 (213)
++|+++++=-.- .+.++.+++ +++.+..+
T Consensus 84 ~~g~~v~~EKP~~~~~~~~~~l~~~a~~~~~~~ 116 (120)
T PF01408_consen 84 EAGKHVLVEKPLALTLEEAEELVEAAKEKGVKV 116 (120)
T ss_dssp HTTSEEEEESSSSSSHHHHHHHHHHHHHHTSCE
T ss_pred HcCCEEEEEcCCcCCHHHHHHHHHHHHHhCCEE
Confidence 999998886654 355555554 44445444
No 19
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=95.65 E-value=0.13 Score=39.73 Aligned_cols=98 Identities=22% Similarity=0.267 Sum_probs=59.6
Q ss_pred hHHHHHHHHhCCCeEEEEecCCCccccccccccCceeEeecCCchhHHHhhhhcCCCCEEEEEcCChHHHHHHHHHHHhc
Q 028115 2 GKAVIKAADAAGLELVPVSFGTEEESGQKVEVCGKEIQVHGLSDRESVLASVFDKYPNMIVVDYTVPAAVNGNAELYSKV 81 (213)
Q Consensus 2 G~~i~~~~~~~~~elv~~~~~~~~~~g~~~~~~~~~v~i~~~~~~~~~l~~~~~~~~d~VvIDFS~p~~~~~~~~~~~~~ 81 (213)
|+.+.+.+.+.|+++.+. .+.... +. |.+.+. ++++ . ...+| +++=|+.|+.+.+.++.|.+.
T Consensus 16 g~~v~~~l~~~G~~v~~V-np~~~~------i~--G~~~y~--sl~e----~-p~~iD-lavv~~~~~~~~~~v~~~~~~ 78 (116)
T PF13380_consen 16 GYRVLRNLKAAGYEVYPV-NPKGGE------IL--GIKCYP--SLAE----I-PEPID-LAVVCVPPDKVPEIVDEAAAL 78 (116)
T ss_dssp HHHHHHHHHHTT-EEEEE-STTCSE------ET--TEE-BS--SGGG----C-SST-S-EEEE-S-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCEEEEE-CCCceE------EC--cEEeec--cccC----C-CCCCC-EEEEEcCHHHHHHHHHHHHHc
Confidence 677888887888888865 322111 11 234442 3332 1 24678 899999999999999999999
Q ss_pred CCCEEEEcCCCCHHHHHHHHHccCCcEEEccChhHHH
Q 028115 82 GVPFVMGTTGGDRVRLHETIENSNVYAVISPQMGKQV 118 (213)
Q Consensus 82 g~~~ViGTTG~~~~~~~~~~~~~~~~~v~a~N~SlGv 118 (213)
|++-|+-.+|-..+++.+++++.++.+ +.|| ++|+
T Consensus 79 g~~~v~~~~g~~~~~~~~~a~~~gi~v-igp~-C~gv 113 (116)
T PF13380_consen 79 GVKAVWLQPGAESEELIEAAREAGIRV-IGPN-CLGV 113 (116)
T ss_dssp T-SEEEE-TTS--HHHHHHHHHTT-EE-EESS--HHH
T ss_pred CCCEEEEEcchHHHHHHHHHHHcCCEE-EeCC-cceE
Confidence 999999999966778888877776663 3344 4443
No 20
>TIGR01921 DAP-DH diaminopimelate dehydrogenase. This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.
Probab=95.50 E-value=0.13 Score=47.10 Aligned_cols=141 Identities=17% Similarity=0.123 Sum_probs=84.0
Q ss_pred ChHHHHHHHH-hCCCeEEEEecCCC-ccccccccccCceeEeecCCchhHHHhhhhcCCCCEEEEEcCChHHHHHHHHHH
Q 028115 1 MGKAVIKAAD-AAGLELVPVSFGTE-EESGQKVEVCGKEIQVHGLSDRESVLASVFDKYPNMIVVDYTVPAAVNGNAELY 78 (213)
Q Consensus 1 MG~~i~~~~~-~~~~elv~~~~~~~-~~~g~~~~~~~~~v~i~~~~~~~~~l~~~~~~~~d~VvIDFS~p~~~~~~~~~~ 78 (213)
||+.+++++. .+++||++++++.+ ...+.. +.++...+.++.+ .++| |++=.+-+..-.+.+..+
T Consensus 14 IGr~~a~al~~~pd~ELVgV~dr~~~~~~~~~-------~~v~~~~d~~e~l-----~~iD-VViIctPs~th~~~~~~~ 80 (324)
T TIGR01921 14 LGRSVEKAIQQQPDMELVGVFSRRGAETLDTE-------TPVYAVADDEKHL-----DDVD-VLILCMGSATDIPEQAPY 80 (324)
T ss_pred HHHHHHHHHHhCCCcEEEEEEcCCcHHHHhhc-------CCccccCCHHHhc-----cCCC-EEEEcCCCccCHHHHHHH
Confidence 6899999887 68999999988764 222221 2222223443322 3688 555555545557788888
Q ss_pred HhcCCCEEEEcCCCC-----HHHHHHHHHccCCcEEEccChhHHHHHHHHHHHHHHHhcCCCCCCCc--EEEEeccCCCC
Q 028115 79 SKVGVPFVMGTTGGD-----RVRLHETIENSNVYAVISPQMGKQVVAFLAAMEIMAEQFPGAFSGYS--LQVLESHQAGK 151 (213)
Q Consensus 79 ~~~g~~~ViGTTG~~-----~~~~~~~~~~~~~~~v~a~N~SlGv~ll~~l~~~aa~~l~~~~~~~d--ieI~E~HH~~K 151 (213)
++.|+++|.--.=+. .+.+++.+++.+...+++.=+--|..-+++++..+ .+|. ...|. =..+..+|..-
T Consensus 81 L~aG~NVV~s~~~h~~~p~~~~~ld~AAk~~g~vsvi~~GwDPG~~si~r~~~ea--~lp~-g~~yt~wG~g~s~ghs~a 157 (324)
T TIGR01921 81 FAQFANTVDSFDNHRDIPRHRQVMDAAAKAAGNVSVISTGWDPGMFSINRVYGEA--VLPK-GQTYTFWGPGLSQGHSDA 157 (324)
T ss_pred HHcCCCEEECCCcccCCHHHHHHHHHHHHHcCCEEEEECCCCcChHHHHHHHHhc--cCCC-CcceeccCCCcCchhhhh
Confidence 999999998522111 23456666655544455544555555556654433 3442 23333 24577888888
Q ss_pred CCc-hHH
Q 028115 152 LDT-SGT 157 (213)
Q Consensus 152 ~Da-SGT 157 (213)
.|. .|-
T Consensus 158 ~~~~~Gv 164 (324)
T TIGR01921 158 VRRIDGV 164 (324)
T ss_pred hcccCCc
Confidence 888 774
No 21
>COG3804 Uncharacterized conserved protein related to dihydrodipicolinate reductase [Function unknown]
Probab=95.24 E-value=0.055 Score=48.87 Aligned_cols=78 Identities=22% Similarity=0.326 Sum_probs=58.0
Q ss_pred hHHHHHHHH-hCCCeEEEEecCCCccccccc-cccCc---eeEeecCCchhHHHhhhhcCCCCEEEEEcCChHHHHHHHH
Q 028115 2 GKAVIKAAD-AAGLELVPVSFGTEEESGQKV-EVCGK---EIQVHGLSDRESVLASVFDKYPNMIVVDYTVPAAVNGNAE 76 (213)
Q Consensus 2 G~~i~~~~~-~~~~elv~~~~~~~~~~g~~~-~~~~~---~v~i~~~~~~~~~l~~~~~~~~d~VvIDFS~p~~~~~~~~ 76 (213)
|...++.+. +++++||++++.++...|+|+ ++++. +|.. .++++..++. .+++++.+--.|+ .+-++
T Consensus 14 Gv~air~l~akpe~elvgawv~s~ak~Gkdlgelagl~dlgV~a--~~~~~avlAt----l~~~~~y~~~~~~--~~~y~ 85 (350)
T COG3804 14 GVAAIRGLLAKPELELVGAWVHSAAKSGKDLGELAGLPDLGVIA--TNSIDAVLAT----LADAVIYAPLLPS--VDEYA 85 (350)
T ss_pred HHHHHHHHHcCCCCceEEEEecCcccccccHHHhcCCCCceeEe--ecccccceec----cccceeeecccch--HHHHH
Confidence 676777765 789999999998887888888 55554 4444 4566666543 3444777777774 77788
Q ss_pred HHHhcCCCEEE
Q 028115 77 LYSKVGVPFVM 87 (213)
Q Consensus 77 ~~~~~g~~~Vi 87 (213)
.|+..|+++|.
T Consensus 86 rlL~aGiNVv~ 96 (350)
T COG3804 86 RLLRAGINVVT 96 (350)
T ss_pred HHHHcCCceec
Confidence 89999999987
No 22
>TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit. ATP citrate lyases appear to form an outgroup.
Probab=94.75 E-value=0.38 Score=43.16 Aligned_cols=99 Identities=15% Similarity=0.078 Sum_probs=63.1
Q ss_pred hHHHHHHHHhCCCeEEEEecCCCccccccccccCceeEeecCCchhHHHhhhhcC-CCCEEEEEcCChHHHHHHHHHHHh
Q 028115 2 GKAVIKAADAAGLELVPVSFGTEEESGQKVEVCGKEIQVHGLSDRESVLASVFDK-YPNMIVVDYTVPAAVNGNAELYSK 80 (213)
Q Consensus 2 G~~i~~~~~~~~~elv~~~~~~~~~~g~~~~~~~~~v~i~~~~~~~~~l~~~~~~-~~d~VvIDFS~p~~~~~~~~~~~~ 80 (213)
|+.+.+...+.|+.++..+.+... +.. + .|++.+. +++++- .. .+| ++|=+..++.+.+.++.|.+
T Consensus 19 ~~~~~~~~~~~g~~~v~~V~p~~~--~~~--v--~G~~~y~--sv~dlp----~~~~~D-lavi~vpa~~v~~~l~e~~~ 85 (286)
T TIGR01019 19 GSFHTEQMLAYGTNIVGGVTPGKG--GTT--V--LGLPVFD--SVKEAV----EETGAN-ASVIFVPAPFAADAIFEAID 85 (286)
T ss_pred HHHHHHHHHhCCCCEEEEECCCCC--cce--e--cCeeccC--CHHHHh----hccCCC-EEEEecCHHHHHHHHHHHHH
Confidence 566666667778888887775410 011 1 1455553 444432 11 278 78889999999999999999
Q ss_pred cCCC-EEEEcCCCCHHHHHHHHHccC-Cc-EEEccC
Q 028115 81 VGVP-FVMGTTGGDRVRLHETIENSN-VY-AVISPQ 113 (213)
Q Consensus 81 ~g~~-~ViGTTG~~~~~~~~~~~~~~-~~-~v~a~N 113 (213)
.|++ +||-|.||.+...+++.+.++ -. -++=||
T Consensus 86 ~Gvk~avIis~Gf~e~~~~~l~~~a~~~girilGPN 121 (286)
T TIGR01019 86 AGIELIVCITEGIPVHDMLKVKRYMEESGTRLIGPN 121 (286)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHHHHcCCEEECCC
Confidence 9986 568899998653334433332 23 255666
No 23
>PRK06349 homoserine dehydrogenase; Provisional
Probab=94.43 E-value=0.23 Score=46.66 Aligned_cols=113 Identities=15% Similarity=0.150 Sum_probs=70.0
Q ss_pred ChHHHHHHHH-h---------CCCeEEEEecCCCccccccccccCceeEeecCCchhHHHhhhhcCCCCEEEEEcCCh-H
Q 028115 1 MGKAVIKAAD-A---------AGLELVPVSFGTEEESGQKVEVCGKEIQVHGLSDRESVLASVFDKYPNMIVVDYTVP-A 69 (213)
Q Consensus 1 MG~~i~~~~~-~---------~~~elv~~~~~~~~~~g~~~~~~~~~v~i~~~~~~~~~l~~~~~~~~d~VvIDFS~p-~ 69 (213)
||+.+++.+. + .+++|+++.++...... .... .+..++ +|.++.+++ ...| ||||-|.+ +
T Consensus 14 VG~~~~~~L~~~~~~l~~~~g~~i~l~~V~~~~~~~~~-~~~~--~~~~~~--~d~~~ll~d---~~iD-vVve~tg~~~ 84 (426)
T PRK06349 14 VGSGVVRILEENAEEIAARAGRPIEIKKVAVRDLEKDR-GVDL--PGILLT--TDPEELVND---PDID-IVVELMGGIE 84 (426)
T ss_pred HHHHHHHHHHHhHHHHHHhcCCCEEEEEEEeCChhhcc-CCCC--ccccee--CCHHHHhhC---CCCC-EEEECCCCch
Confidence 4777776664 2 26889998886442211 1111 112232 467776642 3567 89998754 5
Q ss_pred HHHHHHHHHHhcCCCEEEEcCCCCH---HHHHHHHHccCCcEEEccChhHHHHHHH
Q 028115 70 AVNGNAELYSKVGVPFVMGTTGGDR---VRLHETIENSNVYAVISPQMGKQVVAFL 122 (213)
Q Consensus 70 ~~~~~~~~~~~~g~~~ViGTTG~~~---~~~~~~~~~~~~~~v~a~N~SlGv~ll~ 122 (213)
...++++.|+++|+++|+---.... +++.++++++++.+.+.+...-|.-++.
T Consensus 85 ~~~~~~~~aL~~GkhVVtaNK~~~a~~~~eL~~lA~~~gv~l~fEasV~ggiPii~ 140 (426)
T PRK06349 85 PARELILKALEAGKHVVTANKALLAVHGAELFAAAEEKGVDLYFEAAVAGGIPIIK 140 (426)
T ss_pred HHHHHHHHHHHCCCeEEEcCHHHHHHHHHHHHHHHHHcCCcEEEEEEeeccCchHH
Confidence 6689999999999999986444432 4566777777787777655444444443
No 24
>PLN00125 Succinyl-CoA ligase [GDP-forming] subunit alpha
Probab=94.41 E-value=0.46 Score=42.97 Aligned_cols=99 Identities=15% Similarity=0.067 Sum_probs=64.2
Q ss_pred HHHHHHHHhCCCeEEEEecCCCccccccccccCceeEeecCCchhHHHhhhhcCCCCEEEEEcCChHHHHHHHHHHHhcC
Q 028115 3 KAVIKAADAAGLELVPVSFGTEEESGQKVEVCGKEIQVHGLSDRESVLASVFDKYPNMIVVDYTVPAAVNGNAELYSKVG 82 (213)
Q Consensus 3 ~~i~~~~~~~~~elv~~~~~~~~~~g~~~~~~~~~v~i~~~~~~~~~l~~~~~~~~d~VvIDFS~p~~~~~~~~~~~~~g 82 (213)
+...+...+.|..+++++.+... +.. + .|++.+. +++++-+. ..+| ++|=+.-++.+.+.++.|.+.|
T Consensus 26 ~~~~~~~~~ygt~~~~gV~p~~~--~~~--i--~G~~~y~--sv~dlp~~---~~~D-lAvI~vPa~~v~~al~e~~~~G 93 (300)
T PLN00125 26 TFHTEQAIEYGTKMVGGVTPKKG--GTE--H--LGLPVFN--TVAEAKAE---TKAN-ASVIYVPPPFAAAAILEAMEAE 93 (300)
T ss_pred HHHHHHHHHhCCcEEEEECCCCC--Cce--E--cCeeccC--CHHHHhhc---cCCC-EEEEecCHHHHHHHHHHHHHcC
Confidence 44455556789999999886520 011 1 1456653 55553311 1368 7888999999999999999999
Q ss_pred CC-EEEEcCCCCHHHH-HHHHHccC-CcE-EEccC
Q 028115 83 VP-FVMGTTGGDRVRL-HETIENSN-VYA-VISPQ 113 (213)
Q Consensus 83 ~~-~ViGTTG~~~~~~-~~~~~~~~-~~~-v~a~N 113 (213)
++ +||-|.||.+..+ +.+.+.++ -.+ |+=||
T Consensus 94 vk~~vIisaGf~e~g~~~~~~~~ar~~girviGPN 128 (300)
T PLN00125 94 LDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPN 128 (300)
T ss_pred CCEEEEECCCCCcccHHHHHHHHHhhcCCEEECCC
Confidence 99 7788999986533 22333222 334 66777
No 25
>PTZ00187 succinyl-CoA synthetase alpha subunit; Provisional
Probab=93.73 E-value=1.1 Score=41.01 Aligned_cols=102 Identities=16% Similarity=0.121 Sum_probs=65.6
Q ss_pred hHHHHHHHHhCCCeEEEEecCCCccccccccccCceeEeecCCchhHHHhhhhcCCCCEEEEEcCChHHHHHHHHHHHhc
Q 028115 2 GKAVIKAADAAGLELVPVSFGTEEESGQKVEVCGKEIQVHGLSDRESVLASVFDKYPNMIVVDYTVPAAVNGNAELYSKV 81 (213)
Q Consensus 2 G~~i~~~~~~~~~elv~~~~~~~~~~g~~~~~~~~~v~i~~~~~~~~~l~~~~~~~~d~VvIDFS~p~~~~~~~~~~~~~ 81 (213)
|+.-.+...+.|..+|+++.+.. -|+.+. ..++++++ +.+++.+. ..+| +.|=|.-|..+.+.+..|.+.
T Consensus 42 g~~h~~~~~~ygt~iv~GV~Pgk--gg~~v~--~~Gvpvy~--sv~ea~~~---~~~D-~avI~VPa~~v~dai~Ea~~a 111 (317)
T PTZ00187 42 GTFHTEQAIEYGTKMVGGVNPKK--AGTTHL--KHGLPVFA--TVKEAKKA---TGAD-ASVIYVPPPHAASAIIEAIEA 111 (317)
T ss_pred HHHHHHHHHHhCCcEEEEECCCC--CCceEe--cCCccccC--CHHHHhcc---cCCC-EEEEecCHHHHHHHHHHHHHc
Confidence 34445555678999999988543 122221 01466764 55554422 2478 889999999999999999999
Q ss_pred CCCE-EEEcCCCCHHHHHHHHHc---cCCcEEEccC
Q 028115 82 GVPF-VMGTTGGDRVRLHETIEN---SNVYAVISPQ 113 (213)
Q Consensus 82 g~~~-ViGTTG~~~~~~~~~~~~---~~~~~v~a~N 113 (213)
|++. ||=|-||.+.+..++.+. ..--.|+=||
T Consensus 112 GI~~~ViiteGfpe~d~~~l~~~~~~~~g~rliGPN 147 (317)
T PTZ00187 112 EIPLVVCITEGIPQHDMVKVKHALLSQNKTRLIGPN 147 (317)
T ss_pred CCCEEEEECCCCchhhHHHHHHHHhhcCCCEEECCC
Confidence 9997 556778876543333322 1222466777
No 26
>PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases.; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D ....
Probab=93.63 E-value=0.69 Score=34.24 Aligned_cols=77 Identities=18% Similarity=0.220 Sum_probs=55.4
Q ss_pred hHHHHHHHH-hCCCeEEEEecCCCccccccccccCceeEeecCCchhHHHhhhhcCCCCEEEEEcCChHHHHHHHHHHHh
Q 028115 2 GKAVIKAAD-AAGLELVPVSFGTEEESGQKVEVCGKEIQVHGLSDRESVLASVFDKYPNMIVVDYTVPAAVNGNAELYSK 80 (213)
Q Consensus 2 G~~i~~~~~-~~~~elv~~~~~~~~~~g~~~~~~~~~v~i~~~~~~~~~l~~~~~~~~d~VvIDFS~p~~~~~~~~~~~~ 80 (213)
|+++..... ..+++++++++..++..|+.+. +++++. +++++.+.+ ++| +.|=|.-++.+.+.+..+++
T Consensus 15 G~a~~~~~~~~~g~~i~~~~dv~~~~~G~~i~----gipV~~--~~~~l~~~~---~i~-iaii~VP~~~a~~~~~~~~~ 84 (96)
T PF02629_consen 15 GRALLYNGFSMRGFGIVAVFDVDPEKIGKEIG----GIPVYG--SMDELEEFI---EID-IAIITVPAEAAQEVADELVE 84 (96)
T ss_dssp HHHHHHHHHHHHCECEEEEEEECTTTTTSEET----TEEEES--SHHHHHHHC---TTS-EEEEES-HHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHcCCCCEEEEEcCCCccCcEEC----CEEeec--cHHHhhhhh---CCC-EEEEEcCHHHHHHHHHHHHH
Confidence 677773334 6899999999887777776552 578873 555544432 388 78888888999999999999
Q ss_pred cCCCEEEE
Q 028115 81 VGVPFVMG 88 (213)
Q Consensus 81 ~g~~~ViG 88 (213)
.|++.|+-
T Consensus 85 ~gIk~i~n 92 (96)
T PF02629_consen 85 AGIKGIVN 92 (96)
T ss_dssp TT-SEEEE
T ss_pred cCCCEEEE
Confidence 99987763
No 27
>PRK05678 succinyl-CoA synthetase subunit alpha; Validated
Probab=93.42 E-value=1.1 Score=40.42 Aligned_cols=97 Identities=18% Similarity=0.108 Sum_probs=60.7
Q ss_pred hHHHHHHHHhCCCeEEEEecCC--CccccccccccCceeEeecCCchhHHHhhhhcC-CCCEEEEEcCChHHHHHHHHHH
Q 028115 2 GKAVIKAADAAGLELVPVSFGT--EEESGQKVEVCGKEIQVHGLSDRESVLASVFDK-YPNMIVVDYTVPAAVNGNAELY 78 (213)
Q Consensus 2 G~~i~~~~~~~~~elv~~~~~~--~~~~g~~~~~~~~~v~i~~~~~~~~~l~~~~~~-~~d~VvIDFS~p~~~~~~~~~~ 78 (213)
|+.+.+.+.+.+++.+..+.+. ... + .|++.+. +++++- .. .+| ++|=+.-++.+.+.++.|
T Consensus 21 g~~~l~~l~~~g~~~v~pVnp~~~~~~------v--~G~~~y~--sv~dlp----~~~~~D-lAvi~vp~~~v~~~l~e~ 85 (291)
T PRK05678 21 GTFHTEQMLAYGTNIVGGVTPGKGGTT------V--LGLPVFN--TVAEAV----EATGAN-ASVIYVPPPFAADAILEA 85 (291)
T ss_pred HHHHHHHHHHCCCCEEEEECCCCCCCe------E--eCeeccC--CHHHHh----hccCCC-EEEEEcCHHHHHHHHHHH
Confidence 6667777766666555445543 110 1 1455553 444432 11 279 788899999999999999
Q ss_pred HhcCCCE-EEEcCCCCHHHHHHHHHccC-CcE-EEccC
Q 028115 79 SKVGVPF-VMGTTGGDRVRLHETIENSN-VYA-VISPQ 113 (213)
Q Consensus 79 ~~~g~~~-ViGTTG~~~~~~~~~~~~~~-~~~-v~a~N 113 (213)
.+.|++. ||=|.||..++.+++.+.++ -.+ ++-||
T Consensus 86 ~~~gvk~avI~s~Gf~~~~~~~l~~~a~~~girvlGPN 123 (291)
T PRK05678 86 IDAGIDLIVCITEGIPVLDMLEVKAYLERKKTRLIGPN 123 (291)
T ss_pred HHCCCCEEEEECCCCCHHHHHHHHHHHHHcCCEEECCC
Confidence 9999875 78899998653334433332 332 56777
No 28
>PRK08300 acetaldehyde dehydrogenase; Validated
Probab=93.27 E-value=0.54 Score=42.58 Aligned_cols=113 Identities=19% Similarity=0.094 Sum_probs=72.3
Q ss_pred ChHHHHHHHH-hCCCeEEEEecCCCccccccccccCceeEeecCCchhHHHhhhhcCCCCEEEEEcCChHHHHHHHHHHH
Q 028115 1 MGKAVIKAAD-AAGLELVPVSFGTEEESGQKVEVCGKEIQVHGLSDRESVLASVFDKYPNMIVVDYTVPAAVNGNAELYS 79 (213)
Q Consensus 1 MG~~i~~~~~-~~~~elv~~~~~~~~~~g~~~~~~~~~v~i~~~~~~~~~l~~~~~~~~d~VvIDFS~p~~~~~~~~~~~ 79 (213)
+|+.....+. .+++++++.++..+...|... ....|++.+ .++.+..++.....+.| +++|.|.+..-.++.+.+.
T Consensus 15 IGt~hm~~l~~~~~velvAVvdid~es~gla~-A~~~Gi~~~-~~~ie~LL~~~~~~dID-iVf~AT~a~~H~e~a~~a~ 91 (302)
T PRK08300 15 IGTDLMIKILRSEHLEPGAMVGIDPESDGLAR-ARRLGVATS-AEGIDGLLAMPEFDDID-IVFDATSAGAHVRHAAKLR 91 (302)
T ss_pred HHHHHHHHHhcCCCcEEEEEEeCChhhHHHHH-HHHcCCCcc-cCCHHHHHhCcCCCCCC-EEEECCCHHHHHHHHHHHH
Confidence 3566555555 678999998876543222111 011234432 24677766421113567 8999999999999999999
Q ss_pred hcCCCEEEEcCCCC------HHHHHHHHHccCCcEEEccChhH
Q 028115 80 KVGVPFVMGTTGGD------RVRLHETIENSNVYAVISPQMGK 116 (213)
Q Consensus 80 ~~g~~~ViGTTG~~------~~~~~~~~~~~~~~~v~a~N~Sl 116 (213)
+.|+.+|.=|.=|. +-..+++.+..++.++-+||=+.
T Consensus 92 eaGk~VID~sPA~~~PlvVP~VN~~~~~~~~~~~iia~p~~at 134 (302)
T PRK08300 92 EAGIRAIDLTPAAIGPYCVPAVNLDEHLDAPNVNMVTCGGQAT 134 (302)
T ss_pred HcCCeEEECCccccCCcccCcCCHHHHhcccCCCEEECccHHH
Confidence 99999888776652 01223444445688999999664
No 29
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=93.09 E-value=2.2 Score=44.77 Aligned_cols=121 Identities=11% Similarity=0.092 Sum_probs=76.6
Q ss_pred ChHHHHHHHH-hCCCe------------EEEEecCCCccccccc-cccCc-eeEeecCCchhHHHhhhhcCCCCEEEEEc
Q 028115 1 MGKAVIKAAD-AAGLE------------LVPVSFGTEEESGQKV-EVCGK-EIQVHGLSDRESVLASVFDKYPNMIVVDY 65 (213)
Q Consensus 1 MG~~i~~~~~-~~~~e------------lv~~~~~~~~~~g~~~-~~~~~-~v~i~~~~~~~~~l~~~~~~~~d~VvIDF 65 (213)
||+.+++.+. .++.+ +|.+.+......-+.. ...+. .+.+. ..|.++..+.+ ..+| +||--
T Consensus 580 VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~~~~~~v~lD-v~D~e~L~~~v--~~~D-aVIsa 655 (1042)
T PLN02819 580 VCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGIENAEAVQLD-VSDSESLLKYV--SQVD-VVISL 655 (1042)
T ss_pred HHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHHHhcCCCceEEee-cCCHHHHHHhh--cCCC-EEEEC
Confidence 6888888886 56655 5665564432111111 11121 13332 24556544322 2478 88998
Q ss_pred CChHHHHHHHHHHHhcCCCEEEEcCCCCHHHHH---HHHHccCCcEEEccChhHHHHH--HHHHHHH
Q 028115 66 TVPAAVNGNAELYSKVGVPFVMGTTGGDRVRLH---ETIENSNVYAVISPQMGKQVVA--FLAAMEI 127 (213)
Q Consensus 66 S~p~~~~~~~~~~~~~g~~~ViGTTG~~~~~~~---~~~~~~~~~~v~a~N~SlGv~l--l~~l~~~ 127 (213)
+-+..=.+.++.|+++|+++|+-+ ++.++.+ +.++.++++++....|.-|+.- .++++..
T Consensus 656 lP~~~H~~VAkaAieaGkHvv~ek--y~~~e~~~L~e~Ak~AGV~~m~e~GlDPGid~~lA~~~Id~ 720 (1042)
T PLN02819 656 LPASCHAVVAKACIELKKHLVTAS--YVSEEMSALDSKAKEAGITILCEMGLDPGIDHMMAMKMIDD 720 (1042)
T ss_pred CCchhhHHHHHHHHHcCCCEEECc--CCHHHHHHHHHHHHHcCCEEEECCccCHHHHHHHHHHHHHh
Confidence 888888999999999999998754 7766544 4455667888888889999866 3344444
No 30
>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating). Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.
Probab=92.86 E-value=1.7 Score=38.99 Aligned_cols=109 Identities=21% Similarity=0.193 Sum_probs=70.3
Q ss_pred ChHHHHHHHH-hCCCeEEEEecCCCccccccccccCceeEeecCCchhHHHhhhhcCCCCEEEEEcCChHHHHHHHHHHH
Q 028115 1 MGKAVIKAAD-AAGLELVPVSFGTEEESGQKVEVCGKEIQVHGLSDRESVLASVFDKYPNMIVVDYTVPAAVNGNAELYS 79 (213)
Q Consensus 1 MG~~i~~~~~-~~~~elv~~~~~~~~~~g~~~~~~~~~v~i~~~~~~~~~l~~~~~~~~d~VvIDFS~p~~~~~~~~~~~ 79 (213)
||+.....+. .+++++++..+..+...+... ....|++.+ .++.+..+.+ .+.| ++++.|.+..-.++...++
T Consensus 12 IG~~h~~~ll~~~~~elvaV~d~d~es~~la~-A~~~Gi~~~-~~~~e~ll~~---~dID-aV~iaTp~~~H~e~a~~al 85 (285)
T TIGR03215 12 IGTDLMYKLLRSEHLEMVAMVGIDPESDGLAR-ARELGVKTS-AEGVDGLLAN---PDID-IVFDATSAKAHARHARLLA 85 (285)
T ss_pred HHHHHHHHHHhCCCcEEEEEEeCCcccHHHHH-HHHCCCCEE-ECCHHHHhcC---CCCC-EEEECCCcHHHHHHHHHHH
Confidence 4666655555 688999998876553322111 011234332 1466665542 3567 8999999999999999999
Q ss_pred hcCCCEEEEcCCCC------HHHHHHHHHccCCcEEEccChh
Q 028115 80 KVGVPFVMGTTGGD------RVRLHETIENSNVYAVISPQMG 115 (213)
Q Consensus 80 ~~g~~~ViGTTG~~------~~~~~~~~~~~~~~~v~a~N~S 115 (213)
+.|++++.=|.=+. +-..+++.+..++.++-++|-+
T Consensus 86 ~aGk~VIdekPa~~~plvvp~VN~~~~~~~~~~~iv~c~~~a 127 (285)
T TIGR03215 86 ELGKIVIDLTPAAIGPYVVPAVNLDEHLDAPNVNMVTCGGQA 127 (285)
T ss_pred HcCCEEEECCccccCCccCCCcCHHHHhcCcCCCEEEcCcHH
Confidence 99999887665541 0123344444557888888877
No 31
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=92.45 E-value=0.81 Score=41.77 Aligned_cols=112 Identities=20% Similarity=0.178 Sum_probs=64.5
Q ss_pred ChHHHHHHHH-hCCC-eEEEEecCCCcccccccc---ccCceeEeecCCchhHHHhhhhcCCCCEEEEEcCChHHHHHHH
Q 028115 1 MGKAVIKAAD-AAGL-ELVPVSFGTEEESGQKVE---VCGKEIQVHGLSDRESVLASVFDKYPNMIVVDYTVPAAVNGNA 75 (213)
Q Consensus 1 MG~~i~~~~~-~~~~-elv~~~~~~~~~~g~~~~---~~~~~v~i~~~~~~~~~l~~~~~~~~d~VvIDFS~p~~~~~~~ 75 (213)
||+.+++.+. ..++ +++. .++..+..-+... .........+..|.++ +.++. ...| |||+..-|......+
T Consensus 9 vG~~~~~~L~~~~~~~~v~v-a~r~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-l~~~~-~~~d-vVin~~gp~~~~~v~ 84 (386)
T PF03435_consen 9 VGSAIARLLARRGPFEEVTV-ADRNPEKAERLAEKLLGDRVEAVQVDVNDPES-LAELL-RGCD-VVINCAGPFFGEPVA 84 (386)
T ss_dssp HHHHHHHHHHCTTCE-EEEE-EESSHHHHHHHHT--TTTTEEEEE--TTTHHH-HHHHH-TTSS-EEEE-SSGGGHHHHH
T ss_pred HHHHHHHHHhcCCCCCcEEE-EECCHHHHHHHHhhccccceeEEEEecCCHHH-HHHHH-hcCC-EEEECCccchhHHHH
Confidence 6899999988 4455 5543 3433322111110 0111111122345554 44433 3568 899999999999999
Q ss_pred HHHHhcCCCEEEEcCCC-CHH--HHHHHHHccCCcEEEccChhHHH
Q 028115 76 ELYSKVGVPFVMGTTGG-DRV--RLHETIENSNVYAVISPQMGKQV 118 (213)
Q Consensus 76 ~~~~~~g~~~ViGTTG~-~~~--~~~~~~~~~~~~~v~a~N~SlGv 118 (213)
+.|++.|++.|= |.+ ... ++++.++++++.+|.+.=|.-|.
T Consensus 85 ~~~i~~g~~yvD--~~~~~~~~~~l~~~a~~~g~~~l~~~G~~PGl 128 (386)
T PF03435_consen 85 RACIEAGVHYVD--TSYVTEEMLALDEEAKEAGVTALPGCGFDPGL 128 (386)
T ss_dssp HHHHHHT-EEEE--SS-HHHHHHHCHHHHHHTTSEEE-S-BTTTBH
T ss_pred HHHHHhCCCeec--cchhHHHHHHHHHHHHhhCCEEEeCcccccch
Confidence 999999999999 665 332 34455556678888887777774
No 32
>PRK11579 putative oxidoreductase; Provisional
Probab=92.18 E-value=1.2 Score=40.07 Aligned_cols=111 Identities=14% Similarity=0.076 Sum_probs=68.9
Q ss_pred HHHHHH-hCCCeEEEEecCCCccccccccccCceeEeecCCchhHHHhhhhcCCCCEEEEEcCChHHHHHHHHHHHhcCC
Q 028115 5 VIKAAD-AAGLELVPVSFGTEEESGQKVEVCGKEIQVHGLSDRESVLASVFDKYPNMIVVDYTVPAAVNGNAELYSKVGV 83 (213)
Q Consensus 5 i~~~~~-~~~~elv~~~~~~~~~~g~~~~~~~~~v~i~~~~~~~~~l~~~~~~~~d~VvIDFS~p~~~~~~~~~~~~~g~ 83 (213)
.++++. .++++|++..+..+...... .. +++.+ +|+++.+++ .++| +|+-.|-+..=.+.+..|+++|+
T Consensus 20 ~~~~~~~~~~~~l~av~d~~~~~~~~~--~~--~~~~~--~~~~ell~~---~~vD-~V~I~tp~~~H~~~~~~al~aGk 89 (346)
T PRK11579 20 HAPLIAGTPGLELAAVSSSDATKVKAD--WP--TVTVV--SEPQHLFND---PNID-LIVIPTPNDTHFPLAKAALEAGK 89 (346)
T ss_pred HHHHHhhCCCCEEEEEECCCHHHHHhh--CC--CCcee--CCHHHHhcC---CCCC-EEEEcCCcHHHHHHHHHHHHCCC
Confidence 445555 57899999888654221111 10 22333 578877642 3577 77778888888999999999999
Q ss_pred CEEEEcC-CCCHHH---HHHHHHccCCcEEEccC--hhHHHHHHHHHH
Q 028115 84 PFVMGTT-GGDRVR---LHETIENSNVYAVISPQ--MGKQVVAFLAAM 125 (213)
Q Consensus 84 ~~ViGTT-G~~~~~---~~~~~~~~~~~~v~a~N--~SlGv~ll~~l~ 125 (213)
++++==. ..+.++ +.++++++++.+.+..| |.-...-+.+++
T Consensus 90 hVl~EKPla~t~~ea~~l~~~a~~~g~~l~v~~~~R~~p~~~~~k~~i 137 (346)
T PRK11579 90 HVVVDKPFTVTLSQARELDALAKSAGRVLSVFHNRRWDSDFLTLKALL 137 (346)
T ss_pred eEEEeCCCCCCHHHHHHHHHHHHHhCCEEEEEeeccCCHHHHHHHHHH
Confidence 9887322 234444 44445555666655555 566665555554
No 33
>TIGR03450 mycothiol_INO1 inositol 1-phosphate synthase, Actinobacterial type. This enzyme, inositol 1-phosphate synthase as found in Actinobacteria, produces an essential precursor for several different products, including mycothiol, which is a glutathione analog, and phosphatidylinositol, which is a phospholipid.
Probab=92.16 E-value=1.3 Score=40.97 Aligned_cols=82 Identities=15% Similarity=0.045 Sum_probs=55.8
Q ss_pred hhHHHhhhhcCCCCEEEEEcC---ChHHHHHHHHHHHhcCCCEEEEcCCCC--HHHHHHHHHccCCcEEEccChh-HHHH
Q 028115 46 RESVLASVFDKYPNMIVVDYT---VPAAVNGNAELYSKVGVPFVMGTTGGD--RVRLHETIENSNVYAVISPQMG-KQVV 119 (213)
Q Consensus 46 ~~~~l~~~~~~~~d~VvIDFS---~p~~~~~~~~~~~~~g~~~ViGTTG~~--~~~~~~~~~~~~~~~v~a~N~S-lGv~ 119 (213)
.+++.+.+.+.++| |+|.|= +-++..-....|++.|+++|=+|.=+. ..+++++.++.++|++=-==-| +|..
T Consensus 112 ~~dv~~~lk~~~~d-VlvnylPvGs~~A~~~YA~AAl~aG~afVN~~P~~ia~~p~~a~~f~e~glPi~GDD~Ksq~GaT 190 (351)
T TIGR03450 112 PVDVVQALKDAKVD-VLVSYLPVGSEEADKFYAQCAIDAGVAFVNALPVFIASDPEWAKKFTDAGVPIVGDDIKSQVGAT 190 (351)
T ss_pred HHHHHHHHHhcCCC-EEEECCccchHHHHHHHHHHHHHcCCceEeccCccccCCHHHHHHHHHCCCCEecccccccCCCc
Confidence 34566666677899 899973 335666677778899999999998765 4577777777778854211113 6777
Q ss_pred HHHHHHHHH
Q 028115 120 AFLAAMEIM 128 (213)
Q Consensus 120 ll~~l~~~a 128 (213)
++.+.+..+
T Consensus 191 i~h~vLa~l 199 (351)
T TIGR03450 191 ITHRVLAKL 199 (351)
T ss_pred hHHHHHHHH
Confidence 777754433
No 34
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=91.89 E-value=1.8 Score=38.12 Aligned_cols=83 Identities=20% Similarity=0.266 Sum_probs=46.7
Q ss_pred hHHHHHHHHhCCCeEEEEecCCCccccccc-cccCceeEeecCCchhHHHhhhhcCCCCEEEEEcCChHH---HHHHHHH
Q 028115 2 GKAVIKAADAAGLELVPVSFGTEEESGQKV-EVCGKEIQVHGLSDRESVLASVFDKYPNMIVVDYTVPAA---VNGNAEL 77 (213)
Q Consensus 2 G~~i~~~~~~~~~elv~~~~~~~~~~g~~~-~~~~~~v~i~~~~~~~~~l~~~~~~~~d~VvIDFS~p~~---~~~~~~~ 77 (213)
|+.+++.+.+.|+++++-+...... +.+ ...+..+.. +.-+.++..+-+.+.++| +|||.|||-+ .....+.
T Consensus 12 gr~la~~L~~~g~~v~~s~~t~~~~--~~~~~~g~~~v~~-g~l~~~~l~~~l~~~~i~-~VIDAtHPfA~~is~~a~~a 87 (256)
T TIGR00715 12 SRAIAKGLIAQGIEILVTVTTSEGK--HLYPIHQALTVHT-GALDPQELREFLKRHSID-ILVDATHPFAAQITTNATAV 87 (256)
T ss_pred HHHHHHHHHhCCCeEEEEEccCCcc--ccccccCCceEEE-CCCCHHHHHHHHHhcCCC-EEEEcCCHHHHHHHHHHHHH
Confidence 7888988888889888654432110 011 111111211 111223322233345688 8999999966 4556777
Q ss_pred HHhcCCCEEEE
Q 028115 78 YSKVGVPFVMG 88 (213)
Q Consensus 78 ~~~~g~~~ViG 88 (213)
|.+.|+|.+=-
T Consensus 88 ~~~~~ipylR~ 98 (256)
T TIGR00715 88 CKELGIPYVRF 98 (256)
T ss_pred HHHhCCcEEEE
Confidence 77788877654
No 35
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=90.93 E-value=0.26 Score=37.31 Aligned_cols=88 Identities=18% Similarity=0.195 Sum_probs=56.7
Q ss_pred ChHHHHHHHHhCCCeEEEEecCCCccccccc-cccCceeEeecCCchhHHHhhhhcC-CCCEEEEEcCC-hHHHHHHHHH
Q 028115 1 MGKAVIKAADAAGLELVPVSFGTEEESGQKV-EVCGKEIQVHGLSDRESVLASVFDK-YPNMIVVDYTV-PAAVNGNAEL 77 (213)
Q Consensus 1 MG~~i~~~~~~~~~elv~~~~~~~~~~g~~~-~~~~~~v~i~~~~~~~~~l~~~~~~-~~d~VvIDFS~-p~~~~~~~~~ 77 (213)
+|...++.+...|.++++. +..+... +.+ ..+-..+--+...++.+.+.++... .+| ++||++. ++.+...++.
T Consensus 2 vG~~a~q~ak~~G~~vi~~-~~~~~k~-~~~~~~Ga~~~~~~~~~~~~~~i~~~~~~~~~d-~vid~~g~~~~~~~~~~~ 78 (130)
T PF00107_consen 2 VGLMAIQLAKAMGAKVIAT-DRSEEKL-ELAKELGADHVIDYSDDDFVEQIRELTGGRGVD-VVIDCVGSGDTLQEAIKL 78 (130)
T ss_dssp HHHHHHHHHHHTTSEEEEE-ESSHHHH-HHHHHTTESEEEETTTSSHHHHHHHHTTTSSEE-EEEESSSSHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCEEEEE-ECCHHHH-HHHHhhcccccccccccccccccccccccccce-EEEEecCcHHHHHHHHHH
Confidence 4888999998888887764 4333111 001 1111112122223355555554332 577 8999999 9999999999
Q ss_pred HHhcCCCEEEEcCC
Q 028115 78 YSKVGVPFVMGTTG 91 (213)
Q Consensus 78 ~~~~g~~~ViGTTG 91 (213)
+.+.|.=+++|.++
T Consensus 79 l~~~G~~v~vg~~~ 92 (130)
T PF00107_consen 79 LRPGGRIVVVGVYG 92 (130)
T ss_dssp EEEEEEEEEESSTS
T ss_pred hccCCEEEEEEccC
Confidence 99999999999998
No 36
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=90.61 E-value=3.3 Score=38.87 Aligned_cols=124 Identities=18% Similarity=0.168 Sum_probs=77.0
Q ss_pred hHHHHHHHHhCC-CeEEEEecCCCcccccccccc--CceeEeecCCchhHHHhhhhcCCCCEEEEEcCChHHHHHHHHHH
Q 028115 2 GKAVIKAADAAG-LELVPVSFGTEEESGQKVEVC--GKEIQVHGLSDRESVLASVFDKYPNMIVVDYTVPAAVNGNAELY 78 (213)
Q Consensus 2 G~~i~~~~~~~~-~elv~~~~~~~~~~g~~~~~~--~~~v~i~~~~~~~~~l~~~~~~~~d~VvIDFS~p~~~~~~~~~~ 78 (213)
|+.++..+.+++ .++..+ +++.....+..... ....-..+..|.+++.+-+ .+.| ++|.---|..-...++.|
T Consensus 13 g~~va~~la~~~d~~V~iA-dRs~~~~~~i~~~~~~~v~~~~vD~~d~~al~~li--~~~d-~VIn~~p~~~~~~i~ka~ 88 (389)
T COG1748 13 GSVVAHKLAQNGDGEVTIA-DRSKEKCARIAELIGGKVEALQVDAADVDALVALI--KDFD-LVINAAPPFVDLTILKAC 88 (389)
T ss_pred HHHHHHHHHhCCCceEEEE-eCCHHHHHHHHhhccccceeEEecccChHHHHHHH--hcCC-EEEEeCCchhhHHHHHHH
Confidence 788888877443 776643 33321111111111 1111111223444433322 2458 899999999999999999
Q ss_pred HhcCCCEEEEcCCCCHH---HHHHHHHccCCcEEEccChhHHHHHHHHHHHHHHHhcC
Q 028115 79 SKVGVPFVMGTTGGDRV---RLHETIENSNVYAVISPQMGKQVVAFLAAMEIMAEQFP 133 (213)
Q Consensus 79 ~~~g~~~ViGTTG~~~~---~~~~~~~~~~~~~v~a~N~SlGv~ll~~l~~~aa~~l~ 133 (213)
+++|+++|- |-+..+ +++..++++++.++...=|+-|+.-+ ++..+++.|.
T Consensus 89 i~~gv~yvD--ts~~~~~~~~~~~~a~~Agit~v~~~G~dPGi~nv--~a~~a~~~~~ 142 (389)
T COG1748 89 IKTGVDYVD--TSYYEEPPWKLDEEAKKAGITAVLGCGFDPGITNV--LAAYAAKELF 142 (389)
T ss_pred HHhCCCEEE--cccCCchhhhhhHHHHHcCeEEEcccCcCcchHHH--HHHHHHHHhh
Confidence 999999997 555443 46667777888899998999996443 4556776663
No 37
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=90.59 E-value=1.6 Score=33.41 Aligned_cols=83 Identities=19% Similarity=0.248 Sum_probs=54.6
Q ss_pred ChHHHHHHHH-hCCCeEEEEecCCCccccccc-cccC-----ceeEeecCCchhHHHhhhhcCCCCEEEEEcCChHHHHH
Q 028115 1 MGKAVIKAAD-AAGLELVPVSFGTEEESGQKV-EVCG-----KEIQVHGLSDRESVLASVFDKYPNMIVVDYTVPAAVNG 73 (213)
Q Consensus 1 MG~~i~~~~~-~~~~elv~~~~~~~~~~g~~~-~~~~-----~~v~i~~~~~~~~~l~~~~~~~~d~VvIDFS~p~~~~~ 73 (213)
+|+.+++.+. .+.++++..+.+.. ..|+.+ ...+ ..+.+.. .+.+. + ...| +++..+......+
T Consensus 11 vG~~l~~lL~~hp~~e~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~-~~~~~-~-----~~~D-vvf~a~~~~~~~~ 81 (121)
T PF01118_consen 11 VGRELLRLLAEHPDFELVALVSSSR-SAGKPLSEVFPHPKGFEDLSVED-ADPEE-L-----SDVD-VVFLALPHGASKE 81 (121)
T ss_dssp HHHHHHHHHHHTSTEEEEEEEESTT-TTTSBHHHTTGGGTTTEEEBEEE-TSGHH-H-----TTES-EEEE-SCHHHHHH
T ss_pred HHHHHHHHHhcCCCccEEEeeeecc-ccCCeeehhccccccccceeEee-cchhH-h-----hcCC-EEEecCchhHHHH
Confidence 4899999987 79999998877554 355555 2211 1233322 12222 1 3678 8999999999999
Q ss_pred HHHHHHhcCCCEEEEcCCC
Q 028115 74 NAELYSKVGVPFVMGTTGG 92 (213)
Q Consensus 74 ~~~~~~~~g~~~ViGTTG~ 92 (213)
....+++.|+++|=-++-|
T Consensus 82 ~~~~~~~~g~~ViD~s~~~ 100 (121)
T PF01118_consen 82 LAPKLLKAGIKVIDLSGDF 100 (121)
T ss_dssp HHHHHHHTTSEEEESSSTT
T ss_pred HHHHHhhCCcEEEeCCHHH
Confidence 9999999999555444334
No 38
>PRK05472 redox-sensing transcriptional repressor Rex; Provisional
Probab=89.72 E-value=1.9 Score=36.41 Aligned_cols=108 Identities=15% Similarity=0.139 Sum_probs=63.3
Q ss_pred ChHHHHHHHH--hCCCeEEEEecCCCccccccccccCceeEeecCCchhHHHhhhhcCCCCEEEEEcCChHHHHHHHHHH
Q 028115 1 MGKAVIKAAD--AAGLELVPVSFGTEEESGQKVEVCGKEIQVHGLSDRESVLASVFDKYPNMIVVDYTVPAAVNGNAELY 78 (213)
Q Consensus 1 MG~~i~~~~~--~~~~elv~~~~~~~~~~g~~~~~~~~~v~i~~~~~~~~~l~~~~~~~~d~VvIDFS~p~~~~~~~~~~ 78 (213)
+|+.+++... ..|+++++.++..+...|..+ . ++++...+++++.+.+ ..+| ++|--+.+....+..+.+
T Consensus 95 iG~~l~~~~~~~~~g~~ivgv~D~d~~~~~~~i--~--g~~v~~~~~l~~li~~---~~iD-~ViIa~P~~~~~~i~~~l 166 (213)
T PRK05472 95 LGRALLNYNGFEKRGFKIVAAFDVDPEKIGTKI--G--GIPVYHIDELEEVVKE---NDIE-IGILTVPAEAAQEVADRL 166 (213)
T ss_pred HHHHHHHhhhcccCCcEEEEEEECChhhcCCEe--C--CeEEcCHHHHHHHHHH---CCCC-EEEEeCCchhHHHHHHHH
Confidence 4677777643 578999999987654444332 1 2344434556655432 3578 555555555567788999
Q ss_pred HhcCCCEEEEcCCCCHHHHHHHHHccCCcEEEccChhHHHHHHHH
Q 028115 79 SKVGVPFVMGTTGGDRVRLHETIENSNVYAVISPQMGKQVVAFLA 123 (213)
Q Consensus 79 ~~~g~~~ViGTTG~~~~~~~~~~~~~~~~~v~a~N~SlGv~ll~~ 123 (213)
.+.|+..|..=+=+.. +...-.+|..-|+..+...|..
T Consensus 167 ~~~Gi~~il~~~p~~~-------~v~~~~~v~~~~l~~~l~~l~~ 204 (213)
T PRK05472 167 VEAGIKGILNFAPVRL-------SVPEDVIVRNVDLTVELQTLSY 204 (213)
T ss_pred HHcCCCEEeecCceee-------cCCCCCEEEEechHHHHHHHHH
Confidence 9999887775332211 0112345666777666544443
No 39
>PRK06392 homoserine dehydrogenase; Provisional
Probab=89.16 E-value=2.2 Score=38.93 Aligned_cols=117 Identities=15% Similarity=0.206 Sum_probs=71.2
Q ss_pred ChHHHHHHHHh--------CCCeEEEEecCCCc---cccccc-cc---cCce-eEeecCC--chhHHHhhhhcCCCCEEE
Q 028115 1 MGKAVIKAADA--------AGLELVPVSFGTEE---ESGQKV-EV---CGKE-IQVHGLS--DRESVLASVFDKYPNMIV 62 (213)
Q Consensus 1 MG~~i~~~~~~--------~~~elv~~~~~~~~---~~g~~~-~~---~~~~-v~i~~~~--~~~~~l~~~~~~~~d~Vv 62 (213)
+|+.+++.+.+ .+++|+++.++... ..|-++ .+ ...+ +.-+... ++++.+ ...+| |+
T Consensus 11 VG~~va~~L~~~~~~~~~g~~l~VVaVsds~g~l~~~~Gldl~~l~~~~~~g~l~~~~~~~~~~~~ll----~~~~D-Vv 85 (326)
T PRK06392 11 VGLNVLRIIKSRNDDRRNNNGISVVSVSDSKLSYYNERGLDIGKIISYKEKGRLEEIDYEKIKFDEIF----EIKPD-VI 85 (326)
T ss_pred HHHHHHHHHHhCHHhHhcCCCeEEEEEEECCCcccCCcCCChHHHHHHHhcCccccCCCCcCCHHHHh----cCCCC-EE
Confidence 48888888763 36788988775431 112222 10 0000 1111111 344433 23678 99
Q ss_pred EEcCC--hH--HHHHHHHHHHhcCCCEEEEcCCCC---HHHHHHHHHccCCcEEEccChhHHHHHHH
Q 028115 63 VDYTV--PA--AVNGNAELYSKVGVPFVMGTTGGD---RVRLHETIENSNVYAVISPQMGKQVVAFL 122 (213)
Q Consensus 63 IDFS~--p~--~~~~~~~~~~~~g~~~ViGTTG~~---~~~~~~~~~~~~~~~v~a~N~SlGv~ll~ 122 (213)
||-|. .. -...+++.++++|+.+|+.--|.- ..++.+++++.+..+.+.++..=|+-++.
T Consensus 86 VE~t~~~~~g~~~~~~~~~aL~~G~hVVTaNKgalA~~~~eL~~lA~~~g~~~~~eatV~~g~Pii~ 152 (326)
T PRK06392 86 VDVTPASKDGIREKNLYINAFEHGIDVVTANKSGLANHWHDIMDSASKNRRIIRYEATVAGGVPLFS 152 (326)
T ss_pred EECCCCCCcCchHHHHHHHHHHCCCEEEcCCHHHHHhhHHHHHHHHHHcCCeEEEeeeeeeccchhh
Confidence 99994 22 257888999999999999876642 35677777777777887777666665554
No 40
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=89.11 E-value=3.2 Score=36.58 Aligned_cols=116 Identities=23% Similarity=0.109 Sum_probs=68.1
Q ss_pred HHHHHHHHh-CC-CeEEEEecCCCccccccccccCceeEeecCCchhHHHhhhhcCCCCEEEEEcCChHHHHHHHHHHHh
Q 028115 3 KAVIKAADA-AG-LELVPVSFGTEEESGQKVEVCGKEIQVHGLSDRESVLASVFDKYPNMIVVDYTVPAAVNGNAELYSK 80 (213)
Q Consensus 3 ~~i~~~~~~-~~-~elv~~~~~~~~~~g~~~~~~~~~v~i~~~~~~~~~l~~~~~~~~d~VvIDFS~p~~~~~~~~~~~~ 80 (213)
+.....+.+ ++ +++++..++.++....-.. ..+++ ....|.++.+++ ..+| +|+--|-+..=.+.+..|++
T Consensus 17 ~~~~~~~~~~~~~~~~vav~d~~~~~a~~~a~--~~~~~-~~~~~~~~ll~~---~~iD-~V~Iatp~~~H~e~~~~AL~ 89 (342)
T COG0673 17 KAHLPALAALGGGLELVAVVDRDPERAEAFAE--EFGIA-KAYTDLEELLAD---PDID-AVYIATPNALHAELALAALE 89 (342)
T ss_pred HHhHHHHHhCCCceEEEEEecCCHHHHHHHHH--HcCCC-cccCCHHHHhcC---CCCC-EEEEcCCChhhHHHHHHHHh
Confidence 344555553 44 6999998876532111111 11232 123578887753 3467 66667777777889999999
Q ss_pred cCCCEEEEcCC-CCHH---HHHHHHHccCCcEEEccC--hhHHHHHHHHHH
Q 028115 81 VGVPFVMGTTG-GDRV---RLHETIENSNVYAVISPQ--MGKQVVAFLAAM 125 (213)
Q Consensus 81 ~g~~~ViGTTG-~~~~---~~~~~~~~~~~~~v~a~N--~SlGv~ll~~l~ 125 (213)
+|+++.+=-.= .+.+ ++.+++++++..+.+.-| |+-.+..+.+++
T Consensus 90 aGkhVl~EKPla~t~~ea~~l~~~a~~~~~~l~v~~~~Rf~p~~~~~k~li 140 (342)
T COG0673 90 AGKHVLCEKPLALTLEEAEELVELARKAGVKLMVGFNRRFDPAVQALKELI 140 (342)
T ss_pred cCCEEEEcCCCCCCHHHHHHHHHHHHHcCCceeeehhhhcCHHHHHHHHHH
Confidence 99998872221 2233 455566666677777777 444444444443
No 41
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=88.93 E-value=4.5 Score=35.48 Aligned_cols=79 Identities=25% Similarity=0.327 Sum_probs=45.6
Q ss_pred hHHHHHHHHhCCCeEEEEecCCCcc---ccccccccCceeEeecCCchhHHHhhhhcCCCCEEEEEcCChHH---HHHHH
Q 028115 2 GKAVIKAADAAGLELVPVSFGTEEE---SGQKVEVCGKEIQVHGLSDRESVLASVFDKYPNMIVVDYTVPAA---VNGNA 75 (213)
Q Consensus 2 G~~i~~~~~~~~~elv~~~~~~~~~---~g~~~~~~~~~v~i~~~~~~~~~l~~~~~~~~d~VvIDFS~p~~---~~~~~ 75 (213)
|+.+++.+.+.|..+..-+...-.. .+..+-.++ +.+.+++.+.+ .+.+.+ +|||-|||=+ .....
T Consensus 14 gr~la~~L~~~g~~v~~Svat~~g~~~~~~~~v~~G~----l~~~~~l~~~l---~~~~i~-~VIDATHPfA~~is~~a~ 85 (248)
T PRK08057 14 ARALARALAAAGVDIVLSLAGRTGGPADLPGPVRVGG----FGGAEGLAAYL---REEGID-LVIDATHPYAAQISANAA 85 (248)
T ss_pred HHHHHHHHHhCCCeEEEEEccCCCCcccCCceEEECC----CCCHHHHHHHH---HHCCCC-EEEECCCccHHHHHHHHH
Confidence 6888888877788766544422111 111111111 10122333333 345788 8999999954 55677
Q ss_pred HHHHhcCCCEEEE
Q 028115 76 ELYSKVGVPFVMG 88 (213)
Q Consensus 76 ~~~~~~g~~~ViG 88 (213)
+.|.+.|+|.+=-
T Consensus 86 ~ac~~~~ipyiR~ 98 (248)
T PRK08057 86 AACRALGIPYLRL 98 (248)
T ss_pred HHHHHhCCcEEEE
Confidence 8888898887643
No 42
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=88.77 E-value=1.8 Score=36.21 Aligned_cols=42 Identities=17% Similarity=0.205 Sum_probs=34.4
Q ss_pred HhhhhcCCCCEEEEEcCChHHHHHHHHHHHhcCCCEEEEcCC
Q 028115 50 LASVFDKYPNMIVVDYTVPAAVNGNAELYSKVGVPFVMGTTG 91 (213)
Q Consensus 50 l~~~~~~~~d~VvIDFS~p~~~~~~~~~~~~~g~~~ViGTTG 91 (213)
++++....+|.+++..+.|+.+.+.++.|.+.|+|+|.--+.
T Consensus 48 i~~~i~~~~d~Iiv~~~~~~~~~~~l~~~~~~gIpvv~~d~~ 89 (257)
T PF13407_consen 48 IEQAISQGVDGIIVSPVDPDSLAPFLEKAKAAGIPVVTVDSD 89 (257)
T ss_dssp HHHHHHTTESEEEEESSSTTTTHHHHHHHHHTTSEEEEESST
T ss_pred HHHHHHhcCCEEEecCCCHHHHHHHHHHHhhcCceEEEEecc
Confidence 333444579977888899999999999999999999997666
No 43
>smart00846 Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain. GAPDH is a tetrameric NAD-binding enzyme involved in glycolysis and glyconeogenesis. N-terminal domain is a Rossmann NAD(P) binding fold.
Probab=88.53 E-value=2.6 Score=34.05 Aligned_cols=22 Identities=23% Similarity=0.357 Sum_probs=19.3
Q ss_pred ChHHHHHHHH-hCCCeEEEEecC
Q 028115 1 MGKAVIKAAD-AAGLELVPVSFG 22 (213)
Q Consensus 1 MG~~i~~~~~-~~~~elv~~~~~ 22 (213)
|||.+++.+. .++++|+++.+.
T Consensus 11 iGr~v~~~~~~~~~~~lvai~d~ 33 (149)
T smart00846 11 IGRLVLRALLERPDIEVVAINDL 33 (149)
T ss_pred HHHHHHHHHHhCCCCEEEEeecC
Confidence 8999999987 789999998873
No 44
>PRK08955 glyceraldehyde-3-phosphate dehydrogenase; Validated
Probab=88.50 E-value=2.2 Score=39.17 Aligned_cols=84 Identities=19% Similarity=0.177 Sum_probs=55.6
Q ss_pred ChHHHHHHHH-hCCCeEEEEecCC-C-c--------------c------ccccccccCceeEeecCCchhHHHhhhhcCC
Q 028115 1 MGKAVIKAAD-AAGLELVPVSFGT-E-E--------------E------SGQKVEVCGKEIQVHGLSDRESVLASVFDKY 57 (213)
Q Consensus 1 MG~~i~~~~~-~~~~elv~~~~~~-~-~--------------~------~g~~~~~~~~~v~i~~~~~~~~~l~~~~~~~ 57 (213)
|||.+.+.+. +++++|+++.+.. + + . .|+.+.+.|..+.+....++++. .-..
T Consensus 13 iGr~v~r~~~~~~~~~ivaind~~~~~~~~a~ll~yDs~~g~~~~~v~~~g~~l~~~g~~i~v~~~~~~~~~----~w~g 88 (334)
T PRK08955 13 IGRLALRAAWDWPELEFVQINDPAGDAATLAHLLEFDSVHGRWHHEVTAEGDAIVINGKRIRTTQNKAIADT----DWSG 88 (334)
T ss_pred HHHHHHHHHHhCCCcEEEEecCCCCCHHHHHHHhhhhccCCCCCCCEEEcCCEEEECCEEEEEEecCChhhC----CccC
Confidence 8999999987 6789999987721 1 0 0 12222334445666543344431 1236
Q ss_pred CCEEEEEcCChHHHHHHHHHHHhcCCCEEEEc
Q 028115 58 PNMIVVDYTVPAAVNGNAELYSKVGVPFVMGT 89 (213)
Q Consensus 58 ~d~VvIDFS~p~~~~~~~~~~~~~g~~~ViGT 89 (213)
.| ++|+.|-.....+.....++.|...|+=+
T Consensus 89 vD-iVle~tG~~~s~~~a~~hl~aGak~V~iS 119 (334)
T PRK08955 89 CD-VVIEASGVMKTKALLQAYLDQGVKRVVVT 119 (334)
T ss_pred CC-EEEEccchhhcHHHHHHHHHCCCEEEEEC
Confidence 78 89999999999999999999887666544
No 45
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=86.93 E-value=6.8 Score=37.03 Aligned_cols=77 Identities=18% Similarity=0.151 Sum_probs=49.8
Q ss_pred ChHHHHHHHHhCCC--eEEEEecCCCccccccccccCceeEeecCCchhHHHhhhhcCCCCEEEEEcCChHHHHHHHHHH
Q 028115 1 MGKAVIKAADAAGL--ELVPVSFGTEEESGQKVEVCGKEIQVHGLSDRESVLASVFDKYPNMIVVDYTVPAAVNGNAELY 78 (213)
Q Consensus 1 MG~~i~~~~~~~~~--elv~~~~~~~~~~g~~~~~~~~~v~i~~~~~~~~~l~~~~~~~~d~VvIDFS~p~~~~~~~~~~ 78 (213)
+|+.+.+.+.+.|+ ++.+ +.+... .+. |++.+. ++++ + ...+| ++|=|..|+.+.+.++.|
T Consensus 22 ~g~~~~~~l~~~gf~g~v~~-Vnp~~~------~i~--G~~~~~--sl~~----l-p~~~D-lavi~vp~~~~~~~l~e~ 84 (447)
T TIGR02717 22 VGYAIMKNLIEGGYKGKIYP-VNPKAG------EIL--GVKAYP--SVLE----I-PDPVD-LAVIVVPAKYVPQVVEEC 84 (447)
T ss_pred hHHHHHHHHHhCCCCCcEEE-ECCCCC------ccC--CccccC--CHHH----C-CCCCC-EEEEecCHHHHHHHHHHH
Confidence 36667777766665 4543 332211 111 345543 3333 2 23678 789999999999999999
Q ss_pred HhcCCC-EEEEcCCCCH
Q 028115 79 SKVGVP-FVMGTTGGDR 94 (213)
Q Consensus 79 ~~~g~~-~ViGTTG~~~ 94 (213)
.+.|++ +|+=|.||.+
T Consensus 85 ~~~gv~~~vi~s~gf~e 101 (447)
T TIGR02717 85 GEKGVKGAVVITAGFKE 101 (447)
T ss_pred HhcCCCEEEEECCCccc
Confidence 999987 4567888864
No 46
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=86.79 E-value=3.1 Score=39.82 Aligned_cols=92 Identities=17% Similarity=0.183 Sum_probs=52.9
Q ss_pred ChHHHHHHHHhCCCeEEEEecCCCcccccccccc-CceeEeecCCchhHHHhhhhcCCCCEEEEEcCChHHHHHHHHHH-
Q 028115 1 MGKAVIKAADAAGLELVPVSFGTEEESGQKVEVC-GKEIQVHGLSDRESVLASVFDKYPNMIVVDYTVPAAVNGNAELY- 78 (213)
Q Consensus 1 MG~~i~~~~~~~~~elv~~~~~~~~~~g~~~~~~-~~~v~i~~~~~~~~~l~~~~~~~~d~VvIDFS~p~~~~~~~~~~- 78 (213)
||+.+++.+.+.|++|.. .++.+...-.-.... ..+..+....+++++++++ ..||.|++=-+.++.+.+.++..
T Consensus 12 MG~~lA~nL~~~G~~V~v-~dr~~~~~~~l~~~~~~~g~~i~~~~s~~e~v~~l--~~~d~Iil~v~~~~~v~~vi~~l~ 88 (470)
T PTZ00142 12 MGQNLALNIASRGFKISV-YNRTYEKTEEFVKKAKEGNTRVKGYHTLEELVNSL--KKPRKVILLIKAGEAVDETIDNLL 88 (470)
T ss_pred HHHHHHHHHHHCCCeEEE-EeCCHHHHHHHHHhhhhcCCcceecCCHHHHHhcC--CCCCEEEEEeCChHHHHHHHHHHH
Confidence 899999999999998764 565442211111100 0022222345777766443 24773344336666666665543
Q ss_pred --HhcCCCEEEEcCCCCHH
Q 028115 79 --SKVGVPFVMGTTGGDRV 95 (213)
Q Consensus 79 --~~~g~~~ViGTTG~~~~ 95 (213)
++.|.-+|-++|++..+
T Consensus 89 ~~L~~g~iIID~gn~~~~d 107 (470)
T PTZ00142 89 PLLEKGDIIIDGGNEWYLN 107 (470)
T ss_pred hhCCCCCEEEECCCCCHHH
Confidence 35677788888887544
No 47
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=86.58 E-value=5.3 Score=31.72 Aligned_cols=84 Identities=26% Similarity=0.268 Sum_probs=49.2
Q ss_pred ChHHHHHHHHhCCCeEEEEecCCCccccccccccCceeEeecCCchhHHHhhhhcCCCCEEEEEcCC-----hHHHHHHH
Q 028115 1 MGKAVIKAADAAGLELVPVSFGTEEESGQKVEVCGKEIQVHGLSDRESVLASVFDKYPNMIVVDYTV-----PAAVNGNA 75 (213)
Q Consensus 1 MG~~i~~~~~~~~~elv~~~~~~~~~~g~~~~~~~~~v~i~~~~~~~~~l~~~~~~~~d~VvIDFS~-----p~~~~~~~ 75 (213)
+|+.+++.+.++++++.+.+-+..+ .-+ ..+..+...+..|.+...+.+ ..+| ++|+.-. .+.+...+
T Consensus 10 vG~~l~~~L~~~~~~V~~~~R~~~~-~~~---~~~~~~~~~d~~d~~~~~~al--~~~d-~vi~~~~~~~~~~~~~~~~~ 82 (183)
T PF13460_consen 10 VGRALAKQLLRRGHEVTALVRSPSK-AED---SPGVEIIQGDLFDPDSVKAAL--KGAD-AVIHAAGPPPKDVDAAKNII 82 (183)
T ss_dssp HHHHHHHHHHHTTSEEEEEESSGGG-HHH---CTTEEEEESCTTCHHHHHHHH--TTSS-EEEECCHSTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEecCchh-ccc---ccccccceeeehhhhhhhhhh--hhcc-hhhhhhhhhccccccccccc
Confidence 4899999999888999976543221 111 111222222234554443333 2678 6777765 45677778
Q ss_pred HHHHhcCCCEEE--EcCC
Q 028115 76 ELYSKVGVPFVM--GTTG 91 (213)
Q Consensus 76 ~~~~~~g~~~Vi--GTTG 91 (213)
+.|.+.|++-++ +++|
T Consensus 83 ~a~~~~~~~~~v~~s~~~ 100 (183)
T PF13460_consen 83 EAAKKAGVKRVVYLSSAG 100 (183)
T ss_dssp HHHHHTTSSEEEEEEETT
T ss_pred ccccccccccceeeeccc
Confidence 888888887554 4444
No 48
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=85.98 E-value=6.9 Score=35.96 Aligned_cols=117 Identities=13% Similarity=0.053 Sum_probs=67.8
Q ss_pred ChHHHHHHHH-hC-CCeEEEEecCCCccccccccccCceeEeecCCchhHHHhhhhcCCCCEEEEEc--CChH-HHHHHH
Q 028115 1 MGKAVIKAAD-AA-GLELVPVSFGTEEESGQKVEVCGKEIQVHGLSDRESVLASVFDKYPNMIVVDY--TVPA-AVNGNA 75 (213)
Q Consensus 1 MG~~i~~~~~-~~-~~elv~~~~~~~~~~g~~~~~~~~~v~i~~~~~~~~~l~~~~~~~~d~VvIDF--S~p~-~~~~~~ 75 (213)
||+.-++++. .+ +++|+++.++.++..-+-.. ..+++.+ .|.++.++ .+|+++|.- +.|. .=.+..
T Consensus 13 ~G~~h~~al~~~~~~~eLvaV~d~~~erA~~~A~--~~gi~~y--~~~eell~-----d~Di~~V~ipt~~P~~~H~e~a 83 (343)
T TIGR01761 13 FGQFYLAAFAAAPERFELAGILAQGSERSRALAH--RLGVPLY--CEVEELPD-----DIDIACVVVRSAIVGGQGSALA 83 (343)
T ss_pred HHHHHHHHHHhCCCCcEEEEEEcCCHHHHHHHHH--HhCCCcc--CCHHHHhc-----CCCEEEEEeCCCCCCccHHHHH
Confidence 5777777776 45 79999998865532111111 1134444 57777663 466445554 3343 347888
Q ss_pred HHHHhcCCCEEEEcCCCCHHH---HHHHHHccCCcEEEccChhHHHHHHHHHHHHH
Q 028115 76 ELYSKVGVPFVMGTTGGDRVR---LHETIENSNVYAVISPQMGKQVVAFLAAMEIM 128 (213)
Q Consensus 76 ~~~~~~g~~~ViGTTG~~~~~---~~~~~~~~~~~~v~a~N~SlGv~ll~~l~~~a 128 (213)
..|+++|+++.+=-. +..+| +.+++++.++.+.+ ..|.-.+..+.++++..
T Consensus 84 ~~aL~aGkHVL~EKP-la~~Ea~el~~~A~~~g~~l~v-~~f~p~~~~vr~~i~~~ 137 (343)
T TIGR01761 84 RALLARGIHVLQEHP-LHPRDIQDLLRLAERQGRRYLV-NTFYPHLPAVRRFIEYA 137 (343)
T ss_pred HHHHhCCCeEEEcCC-CCHHHHHHHHHHHHHcCCEEEE-EecCHHHHHHHHHHHcc
Confidence 999999998776322 22344 44445555554444 45766676666665443
No 49
>cd06305 PBP1_methylthioribose_binding_like Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. The sugar-binding domain of the periplasmic proteins in this group is also homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR), DNA-binding transcriptional repressors such as LacI and GalR.
Probab=85.67 E-value=15 Score=30.61 Aligned_cols=36 Identities=11% Similarity=0.129 Sum_probs=25.4
Q ss_pred hcCCCCEEEEEcCChHHHHHHHHHHHhcCCCEEEEc
Q 028115 54 FDKYPNMIVVDYTVPAAVNGNAELYSKVGVPFVMGT 89 (213)
Q Consensus 54 ~~~~~d~VvIDFS~p~~~~~~~~~~~~~g~~~ViGT 89 (213)
....+|.+++--..+....+.++.+.+.|+|+|.--
T Consensus 52 ~~~~vdgii~~~~~~~~~~~~i~~~~~~~ipvV~~~ 87 (273)
T cd06305 52 IAQKVDAIIIQHGRAEVLKPWVKRALDAGIPVVAFD 87 (273)
T ss_pred HHcCCCEEEEecCChhhhHHHHHHHHHcCCCEEEec
Confidence 345788545544456666778888999999988654
No 50
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=85.01 E-value=10 Score=35.13 Aligned_cols=112 Identities=15% Similarity=0.089 Sum_probs=57.0
Q ss_pred ChHHHHHHHHhCCCeEEEEecCCC-ccccccc-cccCceeEeecCCchhHHHhhhhcCCCCEEEEEcCChHHHHHHHHHH
Q 028115 1 MGKAVIKAADAAGLELVPVSFGTE-EESGQKV-EVCGKEIQVHGLSDRESVLASVFDKYPNMIVVDYTVPAAVNGNAELY 78 (213)
Q Consensus 1 MG~~i~~~~~~~~~elv~~~~~~~-~~~g~~~-~~~~~~v~i~~~~~~~~~l~~~~~~~~d~VvIDFS~p~~~~~~~~~~ 78 (213)
+|..+++.+.+.|.++.+ ++... ....+.. .+...++.+...+..++. ...+| +||-=+......+.+..|
T Consensus 16 ~G~~~A~~l~~~G~~V~~-~d~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-----~~~~d-~vv~~~g~~~~~~~~~~a 88 (450)
T PRK14106 16 SGLALAKFLKKLGAKVIL-TDEKEEDQLKEALEELGELGIELVLGEYPEEF-----LEGVD-LVVVSPGVPLDSPPVVQA 88 (450)
T ss_pred HHHHHHHHHHHCCCEEEE-EeCCchHHHHHHHHHHHhcCCEEEeCCcchhH-----hhcCC-EEEECCCCCCCCHHHHHH
Confidence 377888888899998775 45432 1111111 111123333222222221 13578 455433333334455555
Q ss_pred HhcCCCE--------------EEEcCCCC-----HHHHHHHHHccCCcEEEccChhHHHHHH
Q 028115 79 SKVGVPF--------------VMGTTGGD-----RVRLHETIENSNVYAVISPQMGKQVVAF 121 (213)
Q Consensus 79 ~~~g~~~--------------ViGTTG~~-----~~~~~~~~~~~~~~~v~a~N~SlGv~ll 121 (213)
.+.|+|+ |||.||=. .+-+..+-+..+.++.+..| +|+.+.
T Consensus 89 ~~~~i~~~~~~~~~~~~~~~~vI~ITGS~GKTTt~~~l~~iL~~~g~~~~~~g~--ig~~~~ 148 (450)
T PRK14106 89 HKKGIEVIGEVELAYRFSKAPIVAITGTNGKTTTTTLLGEIFKNAGRKTLVAGN--IGYPLI 148 (450)
T ss_pred HHCCCcEEeHHHHHHhhcCCCEEEEeCCCchHHHHHHHHHHHHHcCCCeEEeCc--ccHHHH
Confidence 5555544 78888864 23455555555556667777 565544
No 51
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=84.99 E-value=7.6 Score=34.54 Aligned_cols=42 Identities=21% Similarity=0.345 Sum_probs=30.6
Q ss_pred chhHHHhhhhcCCCCEEEEEcCChHH---HHHHHHHHHhcCCCEEE
Q 028115 45 DRESVLASVFDKYPNMIVVDYTVPAA---VNGNAELYSKVGVPFVM 87 (213)
Q Consensus 45 ~~~~~l~~~~~~~~d~VvIDFS~p~~---~~~~~~~~~~~g~~~Vi 87 (213)
+.+...+-+.+.+.| ++||-|||-+ ....++.|.+.|+|.+-
T Consensus 54 ~~e~l~~~l~e~~i~-llIDATHPyAa~iS~Na~~aake~gipy~r 98 (257)
T COG2099 54 GAEGLAAFLREEGID-LLIDATHPYAARISQNAARAAKETGIPYLR 98 (257)
T ss_pred CHHHHHHHHHHcCCC-EEEECCChHHHHHHHHHHHHHHHhCCcEEE
Confidence 333333333445788 8999999965 56789999999999875
No 52
>TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II. All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's.
Probab=84.90 E-value=3.7 Score=37.73 Aligned_cols=79 Identities=30% Similarity=0.344 Sum_probs=49.8
Q ss_pred ChHHHHHHHH-hCCCeEEEEecCCCcc-------ccccc---------cccCceeEeecCCchhHHHhhhhcCCCCEEEE
Q 028115 1 MGKAVIKAAD-AAGLELVPVSFGTEEE-------SGQKV---------EVCGKEIQVHGLSDRESVLASVFDKYPNMIVV 63 (213)
Q Consensus 1 MG~~i~~~~~-~~~~elv~~~~~~~~~-------~g~~~---------~~~~~~v~i~~~~~~~~~l~~~~~~~~d~VvI 63 (213)
+|+.+++++. +++++||+..+..++. .|-+. ...+.++.+. .++++.+ ..+| +|+
T Consensus 9 IGr~varav~~~~d~elVaVnD~~~~~~a~lA~~lgyds~~~~~~~~~~~~~~~l~v~--g~~eeLl-----~~vD-iVv 80 (333)
T TIGR01546 9 IGKRVADAVTKQDDMKLVGVTKTSPDFEAYRAKELGIPVYAASEEFIPRFEEAGIEVA--GTLEDLL-----EKVD-IVV 80 (333)
T ss_pred HHHHHHHHHhhCCCcEEEEEecCChHHHHHHHHHhCCCEEeecCCcceEeccCceEec--CCHHHHh-----hcCC-EEE
Confidence 5889999987 7899999988754431 11111 1111234443 3566544 2578 788
Q ss_pred EcCChHHHHHHHHHHHhcCCCEEE
Q 028115 64 DYTVPAAVNGNAELYSKVGVPFVM 87 (213)
Q Consensus 64 DFS~p~~~~~~~~~~~~~g~~~Vi 87 (213)
+.|-...-..+.+.+.+.|.+.|+
T Consensus 81 e~Tp~~~~~~na~~~~~~GakaVl 104 (333)
T TIGR01546 81 DATPGGIGAKNKPLYEKAGVKAIF 104 (333)
T ss_pred ECCCCCCChhhHHHHHhCCcCEEE
Confidence 887666667788888888866544
No 53
>COG2344 AT-rich DNA-binding protein [General function prediction only]
Probab=84.80 E-value=4.1 Score=34.99 Aligned_cols=83 Identities=19% Similarity=0.241 Sum_probs=59.6
Q ss_pred ChHHHHHHHH--hCCCeEEEEecCCCccccccccccCceeEeecCCchhHHHhhhhcCCCCEEEEEcCChHHHHHHHHHH
Q 028115 1 MGKAVIKAAD--AAGLELVPVSFGTEEESGQKVEVCGKEIQVHGLSDRESVLASVFDKYPNMIVVDYTVPAAVNGNAELY 78 (213)
Q Consensus 1 MG~~i~~~~~--~~~~elv~~~~~~~~~~g~~~~~~~~~v~i~~~~~~~~~l~~~~~~~~d~VvIDFS~p~~~~~~~~~~ 78 (213)
+|+++..+-- ..+|++++++|..+..+|..+ + +++++.-++++..+.+ ...| +.|=-...+.+.+..+..
T Consensus 95 lG~All~Y~f~~~~~~~iv~~FDv~~~~VG~~~--~--~v~V~~~d~le~~v~~---~dv~-iaiLtVPa~~AQ~vad~L 166 (211)
T COG2344 95 LGRALLNYNFSKKNGMKIVAAFDVDPDKVGTKI--G--DVPVYDLDDLEKFVKK---NDVE-IAILTVPAEHAQEVADRL 166 (211)
T ss_pred HHHHHhcCcchhhcCceEEEEecCCHHHhCccc--C--CeeeechHHHHHHHHh---cCcc-EEEEEccHHHHHHHHHHH
Confidence 5888888763 678999999998776777654 1 3788777788876653 3456 555555556678888999
Q ss_pred HhcCCCEEEEcCC
Q 028115 79 SKVGVPFVMGTTG 91 (213)
Q Consensus 79 ~~~g~~~ViGTTG 91 (213)
.+.|+.-|.-=|+
T Consensus 167 v~aGVkGIlNFtP 179 (211)
T COG2344 167 VKAGVKGILNFTP 179 (211)
T ss_pred HHcCCceEEeccc
Confidence 9999887764444
No 54
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=84.64 E-value=7.5 Score=34.11 Aligned_cols=33 Identities=24% Similarity=0.390 Sum_probs=25.6
Q ss_pred hcCCCCEEEEEcCChHH---HHHHHHHHHhcCCCEEE
Q 028115 54 FDKYPNMIVVDYTVPAA---VNGNAELYSKVGVPFVM 87 (213)
Q Consensus 54 ~~~~~d~VvIDFS~p~~---~~~~~~~~~~~g~~~Vi 87 (213)
.+...+ .|||-|||=+ .....+.|.+.|+|++=
T Consensus 63 ~~~~i~-~vIDATHPfA~~is~na~~a~~~~~ipylR 98 (249)
T PF02571_consen 63 RENGID-AVIDATHPFAAEISQNAIEACRELGIPYLR 98 (249)
T ss_pred HhCCCc-EEEECCCchHHHHHHHHHHHHhhcCcceEE
Confidence 345788 8999999955 45677888889998764
No 55
>TIGR01532 E4PD_g-proteo D-erythrose-4-phosphate dehydrogenase. Accordingly, this model is very close to the corresponding models for GAPDH, and those sequences which hit above trusted here invariably hit between trusted and noise to the GAPDH model (TIGR01534). Similarly, it may be found that there are species outside of the gamma proteobacteria which synthesize pyridoxine and have more than one aparrent GAPDH gene of which one may have E4PD activity - this may necessitate a readjustment of these models. Alternatively, some of the GAPDH enzymes may prove to be bifunctional in certain species.
Probab=84.60 E-value=5 Score=36.63 Aligned_cols=89 Identities=21% Similarity=0.241 Sum_probs=58.0
Q ss_pred ChHHHHHHHHhC----CCeEEEEecCCCc---------------------cccccccccCceeEeecCCchhHHHhhhhc
Q 028115 1 MGKAVIKAADAA----GLELVPVSFGTEE---------------------ESGQKVEVCGKEIQVHGLSDRESVLASVFD 55 (213)
Q Consensus 1 MG~~i~~~~~~~----~~elv~~~~~~~~---------------------~~g~~~~~~~~~v~i~~~~~~~~~l~~~~~ 55 (213)
+||.+.+++.++ ++++++.-+-... ..|..+.+.|..+.+....++++. ...+
T Consensus 10 IGR~vlr~l~e~~~~~~~~vvaInd~~~~~~~ayll~yDS~hg~~~~~v~~~~~~l~v~g~~i~v~~~~~p~~~--~w~~ 87 (325)
T TIGR01532 10 IGRNVLRALYESGERLGIEVVALNELADQASMAHLLRYDTSHGRFPGEVKVDGDCLHVNGDCIRVLHSPTPEAL--PWRA 87 (325)
T ss_pred HHHHHHHHHHhcCCCCCeEEEEEecCCCHHHHHHHHhhCccCCCCCCcEEEeCCEEEECCeEEEEEEcCChhhc--cccc
Confidence 489999988743 5999987652211 112223334455666644444442 1222
Q ss_pred CCCCEEEEEcCChHHHHHHHHHHHhcCCCEEEEcCCC
Q 028115 56 KYPNMIVVDYTVPAAVNGNAELYSKVGVPFVMGTTGG 92 (213)
Q Consensus 56 ~~~d~VvIDFS~p~~~~~~~~~~~~~g~~~ViGTTG~ 92 (213)
..+| ++++-|-+....+....+++.|...|+-+.=+
T Consensus 88 ~gvD-iVie~tG~~~s~e~a~~~l~aGa~~V~~SaP~ 123 (325)
T TIGR01532 88 LGVD-LVLDCTGVYGNREQGERHIRAGAKRVLFSHPG 123 (325)
T ss_pred cCCC-EEEEccchhccHHHHHHHHHcCCeEEEecCCC
Confidence 4688 89999999999999999999997777766444
No 56
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=84.17 E-value=12 Score=32.06 Aligned_cols=78 Identities=13% Similarity=0.116 Sum_probs=50.1
Q ss_pred hHHHhhhhcCCCCEEEEEcCChH---HHHHHHHHHHhc--CCCEEEEcCCCCHHHHHHHHHccCCcE-EEccChhHHHHH
Q 028115 47 ESVLASVFDKYPNMIVVDYTVPA---AVNGNAELYSKV--GVPFVMGTTGGDRVRLHETIENSNVYA-VISPQMGKQVVA 120 (213)
Q Consensus 47 ~~~l~~~~~~~~d~VvIDFS~p~---~~~~~~~~~~~~--g~~~ViGTTG~~~~~~~~~~~~~~~~~-v~a~N~SlGv~l 120 (213)
++.++.+.+.+||.|.+=|+.+. .+.+.++...+. ++++++|=.+++++--+.++.+..++. .|+.|-.-+|.+
T Consensus 129 e~~v~~~~~~~~~~V~lS~~~~~~~~~~~~~i~~L~~~~~~~~i~vGG~~~~~~~~~~~~~~~~~gad~y~~da~~~v~~ 208 (213)
T cd02069 129 EKILEAAKEHKADIIGLSGLLVPSLDEMVEVAEEMNRRGIKIPLLIGGAATSRKHTAVKIAPEYDGPVVYVKDASRALGV 208 (213)
T ss_pred HHHHHHHHHcCCCEEEEccchhccHHHHHHHHHHHHhcCCCCeEEEEChhcCHHHHhhhhccccCCCceEecCHHHHHHH
Confidence 33344444568997777776554 344555555555 578889888888764444433445666 899998888876
Q ss_pred HHHH
Q 028115 121 FLAA 124 (213)
Q Consensus 121 l~~l 124 (213)
..++
T Consensus 209 ~~~~ 212 (213)
T cd02069 209 ANKL 212 (213)
T ss_pred HHHh
Confidence 5543
No 57
>COG1832 Predicted CoA-binding protein [General function prediction only]
Probab=83.80 E-value=8.3 Score=31.29 Aligned_cols=49 Identities=16% Similarity=0.040 Sum_probs=40.8
Q ss_pred CCCEEEEEcCChHHHHHHHHHHHhcCCCEEEEcCCCCHHHHHHHHHccCC
Q 028115 57 YPNMIVVDYTVPAAVNGNAELYSKVGVPFVMGTTGGDRVRLHETIENSNV 106 (213)
Q Consensus 57 ~~d~VvIDFS~p~~~~~~~~~~~~~g~~~ViGTTG~~~~~~~~~~~~~~~ 106 (213)
..| +|.=|-.|+.+.+.++.+++.+.++|=.--|...++..+..+.++.
T Consensus 73 ~ID-iVdvFR~~e~~~~i~~eal~~~~kv~W~QlGi~n~ea~~~~~~aG~ 121 (140)
T COG1832 73 PID-IVDVFRRSEAAPEVAREALEKGAKVVWLQLGIRNEEAAEKARDAGL 121 (140)
T ss_pred CCc-EEEEecChhhhHHHHHHHHhhCCCeEEEecCcCCHHHHHHHHHhCc
Confidence 567 7888999999999999999999999999999876666566655554
No 58
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=83.68 E-value=6.6 Score=28.12 Aligned_cols=70 Identities=19% Similarity=0.290 Sum_probs=42.2
Q ss_pred CchhHHHhhhhcCCCCEEEEEcCChH-HHHHHHHHHHh--cCCCEEEEcCCCCHHHHHHHHHccCCcEEEccCh
Q 028115 44 SDRESVLASVFDKYPNMIVVDYTVPA-AVNGNAELYSK--VGVPFVMGTTGGDRVRLHETIENSNVYAVISPQM 114 (213)
Q Consensus 44 ~~~~~~l~~~~~~~~d~VvIDFS~p~-~~~~~~~~~~~--~g~~~ViGTTG~~~~~~~~~~~~~~~~~v~a~N~ 114 (213)
.+.++++..+....||.+++|+..|. ...+.++...+ ..+|+|+=|+--+.+...+.. .+++.-++.-++
T Consensus 30 ~~~~~~~~~~~~~~~d~iiid~~~~~~~~~~~~~~i~~~~~~~~ii~~t~~~~~~~~~~~~-~~g~~~~l~kp~ 102 (112)
T PF00072_consen 30 SSGEEALELLKKHPPDLIIIDLELPDGDGLELLEQIRQINPSIPIIVVTDEDDSDEVQEAL-RAGADDYLSKPF 102 (112)
T ss_dssp SSHHHHHHHHHHSTESEEEEESSSSSSBHHHHHHHHHHHTTTSEEEEEESSTSHHHHHHHH-HTTESEEEESSS
T ss_pred CCHHHHHHHhcccCceEEEEEeeeccccccccccccccccccccEEEecCCCCHHHHHHHH-HCCCCEEEECCC
Confidence 45566666666678998899988776 24444444444 458888777655555555544 445333333333
No 59
>COG0074 SucD Succinyl-CoA synthetase, alpha subunit [Energy production and conversion]
Probab=83.65 E-value=11 Score=34.19 Aligned_cols=88 Identities=18% Similarity=0.133 Sum_probs=60.9
Q ss_pred ChHHHHHHHHhCCCeEEEEecCCCccccccccccCceeEeecCCchhHHHhhhhcCCCCEEEEEcCChHHHHHHHHHHHh
Q 028115 1 MGKAVIKAADAAGLELVPVSFGTEEESGQKVEVCGKEIQVHGLSDRESVLASVFDKYPNMIVVDYTVPAAVNGNAELYSK 80 (213)
Q Consensus 1 MG~~i~~~~~~~~~elv~~~~~~~~~~g~~~~~~~~~v~i~~~~~~~~~l~~~~~~~~d~VvIDFS~p~~~~~~~~~~~~ 80 (213)
||+.-.+...+.|..+|+++.++ .-|..+ .++++++ ..++++.+ ..+| +-|=|-.|..+.+.+..|++
T Consensus 20 ~gtfh~~~~l~yGt~~V~GvtPg--kgG~~~----~g~PVf~--tV~EA~~~---~~a~-~svI~Vp~~~aadai~EAid 87 (293)
T COG0074 20 QGTFHTEQMLAYGTKIVGGVTPG--KGGQTI----LGLPVFN--TVEEAVKE---TGAN-ASVIFVPPPFAADAILEAID 87 (293)
T ss_pred cchHHHHHHHHhCCceeecccCC--CCceEE----cCccHHH--HHHHHHHh---hCCC-EEEEecCcHHHHHHHHHHHh
Confidence 56666677777799999887643 223322 1366763 66666654 3678 78889999999999999999
Q ss_pred cCCCEEEEcC-CCCHHHHHHH
Q 028115 81 VGVPFVMGTT-GGDRVRLHET 100 (213)
Q Consensus 81 ~g~~~ViGTT-G~~~~~~~~~ 100 (213)
.++++|+.-| |....++-++
T Consensus 88 a~i~liv~ITEgIP~~D~~~~ 108 (293)
T COG0074 88 AGIKLVVIITEGIPVLDMLEL 108 (293)
T ss_pred CCCcEEEEEeCCCCHHHHHHH
Confidence 9999777655 5554443333
No 60
>cd06347 PBP1_ABC_ligand_binding_like_12 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=83.57 E-value=15 Score=31.62 Aligned_cols=53 Identities=21% Similarity=0.259 Sum_probs=39.7
Q ss_pred CchhHHHhhhhcCCCCEEEEEcCChHHHHHHHHHHHhcCCC-EEEEcCCCCHHHH
Q 028115 44 SDRESVLASVFDKYPNMIVVDYTVPAAVNGNAELYSKVGVP-FVMGTTGGDRVRL 97 (213)
Q Consensus 44 ~~~~~~l~~~~~~~~d~VvIDFS~p~~~~~~~~~~~~~g~~-~ViGTTG~~~~~~ 97 (213)
.|....+.++.+.++| ++|=+..++.+...++.|.+.|.+ .++|+.+|...++
T Consensus 178 ~d~~~~~~~~~~~~~d-~i~~~~~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~ 231 (334)
T cd06347 178 TDFSAQLTKIKAKNPD-VIFLPGYYTEVGLIAKQARELGIKVPILGGDGWDSPKL 231 (334)
T ss_pred CcHHHHHHHHHhcCCC-EEEEcCchhhHHHHHHHHHHcCCCCcEEecccccCHHH
Confidence 4666666777777899 667777888888889999998865 4567788876554
No 61
>cd06301 PBP1_rhizopine_binding_like Periplasmic binding proteins specific to rhizopines. Periplasmic binding proteins specific to rhizopines, which are simple sugar-like compounds produced in the nodules induced by the symbiotic root nodule bacteria, such as Rhizobium and Sinorhizobium. Rhizopine-binding-like proteins from other bacteria are also included. Two inositol based rhizopine compounds are known to date: L-3-O-methly-scyllo-inosamine (3-O-MSI) and scyllo-inosamine. Bacterial strains that can metabolize rhizopine have a greater competitive advantage in nodulation and rhizopine synthesis is regulated by NifA/NtrA regulatory transcription activators which are maximally expressed at the onset of nitrogen fixation in bacteroids. The members of this group belong to the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily.
Probab=82.59 E-value=20 Score=29.89 Aligned_cols=39 Identities=18% Similarity=0.175 Sum_probs=27.6
Q ss_pred HhhhhcCCCCEEEEEcCChHHHHHHHHHHHhcCCCEEEE
Q 028115 50 LASVFDKYPNMIVVDYTVPAAVNGNAELYSKVGVPFVMG 88 (213)
Q Consensus 50 l~~~~~~~~d~VvIDFS~p~~~~~~~~~~~~~g~~~ViG 88 (213)
+..+...++|.++|.-..++...+.++.+.+.++|+|.-
T Consensus 49 i~~l~~~~vdgiii~~~~~~~~~~~~~~l~~~~iPvv~~ 87 (272)
T cd06301 49 VENFIAQGVDAIIVVPVDTAATAPIVKAANAAGIPLVYV 87 (272)
T ss_pred HHHHHHcCCCEEEEecCchhhhHHHHHHHHHCCCeEEEe
Confidence 333444578865666555666778889999999999864
No 62
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=82.24 E-value=7.4 Score=34.72 Aligned_cols=108 Identities=16% Similarity=0.143 Sum_probs=61.1
Q ss_pred ChHHHHHHHHhCCCeEEEEecCCCccccccc-c-------ccCcee--EeecCCchhHHHhhhhcCCCCEEEEEcCChHH
Q 028115 1 MGKAVIKAADAAGLELVPVSFGTEEESGQKV-E-------VCGKEI--QVHGLSDRESVLASVFDKYPNMIVVDYTVPAA 70 (213)
Q Consensus 1 MG~~i~~~~~~~~~elv~~~~~~~~~~g~~~-~-------~~~~~v--~i~~~~~~~~~l~~~~~~~~d~VvIDFS~p~~ 70 (213)
||..++..+...|+++.. +++.+... +.+ . ..+..+ .+....++++++ ..+| +||=...+..
T Consensus 15 mG~~ia~~L~~~G~~V~~-~~r~~~~~-~~i~~~~~~~~~~~g~~~~~~~~~~~~~~e~~-----~~aD-~Vi~~v~~~~ 86 (328)
T PRK14618 15 WGTALAVLAASKGVPVRL-WARRPEFA-AALAAERENREYLPGVALPAELYPTADPEEAL-----AGAD-FAVVAVPSKA 86 (328)
T ss_pred HHHHHHHHHHHCCCeEEE-EeCCHHHH-HHHHHhCcccccCCCCcCCCCeEEeCCHHHHH-----cCCC-EEEEECchHH
Confidence 899999988888888663 44432211 111 0 001100 022234555433 2578 7777777777
Q ss_pred HHHHHHHHHhcCCCEEEEcCCCCH-----HHHHHHHHc---cCCcEEEccChhHH
Q 028115 71 VNGNAELYSKVGVPFVMGTTGGDR-----VRLHETIEN---SNVYAVISPQMGKQ 117 (213)
Q Consensus 71 ~~~~~~~~~~~g~~~ViGTTG~~~-----~~~~~~~~~---~~~~~v~a~N~SlG 117 (213)
+.+.++.+ +.+..+|.-+||++. ..+.+.... .++.++-.||+.--
T Consensus 87 ~~~v~~~l-~~~~~vi~~~~Gi~~~~~~~~~l~~~l~~~~~~~~~~~~gP~~a~~ 140 (328)
T PRK14618 87 LRETLAGL-PRALGYVSCAKGLAPDGGRLSELARVLEFLTQARVAVLSGPNHAEE 140 (328)
T ss_pred HHHHHHhc-CcCCEEEEEeeccccCCCccchHHHHHHHhcCCCeEEEECccHHHH
Confidence 77666553 456788889999863 234443322 34556778887654
No 63
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=82.11 E-value=5.8 Score=32.44 Aligned_cols=69 Identities=19% Similarity=0.201 Sum_probs=52.6
Q ss_pred cCCCC--EEEEEcCChHHHHHHHHHHHhcCCCEEEEcCCCCHH-------HHHHHHHccCCcEE-EccChhHHHHHHHH
Q 028115 55 DKYPN--MIVVDYTVPAAVNGNAELYSKVGVPFVMGTTGGDRV-------RLHETIENSNVYAV-ISPQMGKQVVAFLA 123 (213)
Q Consensus 55 ~~~~d--~VvIDFS~p~~~~~~~~~~~~~g~~~ViGTTG~~~~-------~~~~~~~~~~~~~v-~a~N~SlGv~ll~~ 123 (213)
..++| ++++|-|+.+--...+....+.|+|+|+.-+=++.. +.+.+.+.-++|++ +|+-..-|+.-|++
T Consensus 76 ~~~~D~ii~VvDa~~l~r~l~l~~ql~e~g~P~vvvlN~~D~a~~~g~~id~~~Ls~~Lg~pvi~~sa~~~~g~~~L~~ 154 (156)
T PF02421_consen 76 SEKPDLIIVVVDATNLERNLYLTLQLLELGIPVVVVLNKMDEAERKGIEIDAEKLSERLGVPVIPVSARTGEGIDELKD 154 (156)
T ss_dssp HTSSSEEEEEEEGGGHHHHHHHHHHHHHTTSSEEEEEETHHHHHHTTEEE-HHHHHHHHTS-EEEEBTTTTBTHHHHHH
T ss_pred hcCCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEEeCHHHHHHcCCEECHHHHHHHhCCCEEEEEeCCCcCHHHHHh
Confidence 45788 478999999998889999999999999999988753 34677777789986 46666666655443
No 64
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=81.28 E-value=3.5 Score=30.49 Aligned_cols=37 Identities=19% Similarity=0.343 Sum_probs=31.3
Q ss_pred CCC--EEEEEcCChHHHHHHHHHHHhcCCCEEEEc-CCCC
Q 028115 57 YPN--MIVVDYTVPAAVNGNAELYSKVGVPFVMGT-TGGD 93 (213)
Q Consensus 57 ~~d--~VvIDFS~p~~~~~~~~~~~~~g~~~ViGT-TG~~ 93 (213)
++| +|+.||-+.++....-+.|.++++|++.-- +|++
T Consensus 48 ~aD~VIv~t~~vsH~~~~~vk~~akk~~ip~~~~~~~~~~ 87 (97)
T PF10087_consen 48 KADLVIVFTDYVSHNAMWKVKKAAKKYGIPIIYSRSRGVS 87 (97)
T ss_pred CCCEEEEEeCCcChHHHHHHHHHHHHcCCcEEEECCCCHH
Confidence 678 357789999999999999999999999877 7775
No 65
>PLN02688 pyrroline-5-carboxylate reductase
Probab=81.09 E-value=15 Score=31.56 Aligned_cols=101 Identities=14% Similarity=0.152 Sum_probs=57.8
Q ss_pred ChHHHHHHHHhCCC----eEEEEecCCCccccccccccCceeEeecCCchhHHHhhhhcCCCCEEEEEcCChHHHHHHHH
Q 028115 1 MGKAVIKAADAAGL----ELVPVSFGTEEESGQKVEVCGKEIQVHGLSDRESVLASVFDKYPNMIVVDYTVPAAVNGNAE 76 (213)
Q Consensus 1 MG~~i~~~~~~~~~----elv~~~~~~~~~~g~~~~~~~~~v~i~~~~~~~~~l~~~~~~~~d~VvIDFS~p~~~~~~~~ 76 (213)
||+.+++.+.+.++ +++...++.+... +.+ ...++.+. .+..+++ .++| +||=-..|..+.+.++
T Consensus 11 mG~a~a~~L~~~g~~~~~~i~v~~~r~~~~~-~~~--~~~g~~~~--~~~~e~~-----~~aD-vVil~v~~~~~~~vl~ 79 (266)
T PLN02688 11 MAEAIARGLVASGVVPPSRISTADDSNPARR-DVF--QSLGVKTA--ASNTEVV-----KSSD-VIILAVKPQVVKDVLT 79 (266)
T ss_pred HHHHHHHHHHHCCCCCcceEEEEeCCCHHHH-HHH--HHcCCEEe--CChHHHH-----hcCC-EEEEEECcHHHHHHHH
Confidence 89999999887776 6654325443211 111 11234332 3444433 2578 5666668888888876
Q ss_pred HHHh---cCCCEEEEcCCCCHHHHHHHHHccCCcEE-EccCh
Q 028115 77 LYSK---VGVPFVMGTTGGDRVRLHETIENSNVYAV-ISPQM 114 (213)
Q Consensus 77 ~~~~---~g~~~ViGTTG~~~~~~~~~~~~~~~~~v-~a~N~ 114 (213)
.... .+..+|.-+.|.+.++++++... .+++ ..||.
T Consensus 80 ~l~~~~~~~~~iIs~~~g~~~~~l~~~~~~--~~vvr~mP~~ 119 (266)
T PLN02688 80 ELRPLLSKDKLLVSVAAGITLADLQEWAGG--RRVVRVMPNT 119 (266)
T ss_pred HHHhhcCCCCEEEEecCCCcHHHHHHHcCC--CCEEEECCCc
Confidence 5543 34445656678877777654332 2566 46774
No 66
>PF00044 Gp_dh_N: Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain; InterPro: IPR020828 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) plays an important role in glycolysis and gluconeogenesis [] by reversibly catalysing the oxidation and phosphorylation of D-glyceraldehyde-3-phosphate to 1,3-diphospho-glycerate. The enzyme exists as a tetramer of identical subunits, each containing 2 conserved functional domains: an NAD-binding domain, and a highly conserved catalytic domain []. The enzyme has been found to bind to actin and tropomyosin, and may thus have a role in cytoskeleton assembly. Alternatively, the cytoskeleton may provide a framework for precise positioning of the glycolytic enzymes, thus permitting efficient passage of metabolites from enzyme to enzyme []. GAPDH displays diverse non-glycolytic functions as well, its role depending upon its subcellular location. For instance, the translocation of GAPDH to the nucleus acts as a signalling mechanism for programmed cell death, or apoptosis []. The accumulation of GAPDH within the nucleus is involved in the induction of apoptosis, where GAPDH functions in the activation of transcription. The presence of GAPDH is associated with the synthesis of pro-apoptotic proteins like BAX, c-JUN and GAPDH itself. GAPDH has been implicated in certain neurological diseases: GAPDH is able to bind to the gene products from neurodegenerative disorders such as Huntington's disease, Alzheimer's disease, Parkinson's disease and Machado-Joseph disease through stretches encoded by their CAG repeats. Abnormal neuronal apoptosis is associated with these diseases. Propargylamines such as deprenyl increase neuronal survival by interfering with apoptosis signalling pathways via their binding to GAPDH, which decreases the synthesis of pro-apoptotic proteins []. This entry represents the N-terminal domain which is a Rossmann NAD(P) binding fold.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 2G82_Q 1CER_R 1ZNQ_Q 3GPD_G 1U8F_R 3DOC_B 2YYY_A 1GPD_G 4GPD_1 2I5P_O ....
Probab=80.74 E-value=5.2 Score=32.52 Aligned_cols=23 Identities=26% Similarity=0.449 Sum_probs=19.5
Q ss_pred ChHHHHHHHH-hCCCeEEEEecCC
Q 028115 1 MGKAVIKAAD-AAGLELVPVSFGT 23 (213)
Q Consensus 1 MG~~i~~~~~-~~~~elv~~~~~~ 23 (213)
+||.+.+++. ++++||++.-+..
T Consensus 11 IGR~v~r~~~~~~~~evvaInd~~ 34 (151)
T PF00044_consen 11 IGRLVLRAALDQPDIEVVAINDPA 34 (151)
T ss_dssp HHHHHHHHHHTSTTEEEEEEEESS
T ss_pred ccHHHHHhhcccceEEEEEEeccc
Confidence 4899999998 8899999987744
No 67
>PRK06813 homoserine dehydrogenase; Validated
Probab=80.65 E-value=11 Score=34.76 Aligned_cols=99 Identities=13% Similarity=0.151 Sum_probs=68.9
Q ss_pred CCCEEEEEcCCh-----HHHHHHHHHHHhcCCCEEEEcCCCC---HHHHHHHHHccCCcEEEccChhHHHHHHHHHHHHH
Q 028115 57 YPNMIVVDYTVP-----AAVNGNAELYSKVGVPFVMGTTGGD---RVRLHETIENSNVYAVISPQMGKQVVAFLAAMEIM 128 (213)
Q Consensus 57 ~~d~VvIDFS~p-----~~~~~~~~~~~~~g~~~ViGTTG~~---~~~~~~~~~~~~~~~v~a~N~SlGv~ll~~l~~~a 128 (213)
..| |+||-|.. +..+++++.++++|+.+|..--+.- .+++.+++++.++.+.|.++..=|+-++.-+ +..
T Consensus 86 ~~d-VvVe~T~s~~~~~e~a~~~~~~aL~~G~hVVTANK~~la~~~~eL~~lA~~~g~~~~yEasVggGiPiI~~l-~~~ 163 (346)
T PRK06813 86 SGT-VLVESTVTNLKDGNPGKQYIKQAIEKKMDIVAISKGALVTNWREINEAAKIANVRIRYSGATAAALPTLDIG-QFS 163 (346)
T ss_pred CCC-EEEECCCCccCCchHHHHHHHHHHHCCCeEEcCCcHHHhccHHHHHHHHHHcCCeEEEeeeeeeccchHHHH-hhh
Confidence 357 99999754 5678899999999999998765532 4678888888889999999998888887765 322
Q ss_pred HHhcCCCCCCCcEEEEeccCCCCCCc-hHHHHHHHHHHHhcCCC
Q 028115 129 AEQFPGAFSGYSLQVLESHQAGKLDT-SGTAKAVISCFQKLGVS 171 (213)
Q Consensus 129 a~~l~~~~~~~dieI~E~HH~~K~Da-SGTA~~la~~~~~~~~~ 171 (213)
. .+-+|.=+|- - |||..-+-..+.+.|+.
T Consensus 164 ~-------~g~~I~~i~G-------IlNGT~NyIL~~m~~~g~~ 193 (346)
T PRK06813 164 L-------AGCHIEKIEG-------ILNGTTNYILTKMNEEDIT 193 (346)
T ss_pred c-------ccCcEEEEEE-------EEechHHHHHhhhhhcCCC
Confidence 1 1224433332 3 78887766655433333
No 68
>cd06346 PBP1_ABC_ligand_binding_like_11 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=80.30 E-value=35 Score=29.63 Aligned_cols=52 Identities=19% Similarity=0.082 Sum_probs=38.7
Q ss_pred CchhHHHhhhhcCCCCEEEEEcCChHHHHHHHHHHHhcCCC-EEEEcCCCCHHH
Q 028115 44 SDRESVLASVFDKYPNMIVVDYTVPAAVNGNAELYSKVGVP-FVMGTTGGDRVR 96 (213)
Q Consensus 44 ~~~~~~l~~~~~~~~d~VvIDFS~p~~~~~~~~~~~~~g~~-~ViGTTG~~~~~ 96 (213)
.|+...+..+...+|| +|+=+..+......++.+.+.|.+ .+++++|+..++
T Consensus 179 ~d~~~~v~~l~~~~pd-~v~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~ 231 (312)
T cd06346 179 SSYSSEVAAAAAGGPD-ALVVIGYPETGSGILRSAYEQGLFDKFLLTDGMKSDS 231 (312)
T ss_pred CCHHHHHHHHHhcCCC-EEEEecccchHHHHHHHHHHcCCCCceEeeccccChH
Confidence 4777777777778899 677777788888889999998874 356667765444
No 69
>cd06282 PBP1_GntR_like_2 Ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding
Probab=80.12 E-value=31 Score=28.42 Aligned_cols=38 Identities=13% Similarity=0.313 Sum_probs=24.5
Q ss_pred HhhhhcCCCCEEEEEcCChHHHHHHHHHHHhcCCCEEEE
Q 028115 50 LASVFDKYPNMIVVDYTVPAAVNGNAELYSKVGVPFVMG 88 (213)
Q Consensus 50 l~~~~~~~~d~VvIDFS~p~~~~~~~~~~~~~g~~~ViG 88 (213)
+..+....+|.+++...++.. .+.++.+.+.|+|+|.-
T Consensus 48 ~~~l~~~~vdgiii~~~~~~~-~~~~~~~~~~~ipvV~~ 85 (266)
T cd06282 48 VETLLRQRVDGLILTVADAAT-SPALDLLDAERVPYVLA 85 (266)
T ss_pred HHHHHhcCCCEEEEecCCCCc-hHHHHHHhhCCCCEEEE
Confidence 333334578866666555543 34678888999997654
No 70
>PF13727 CoA_binding_3: CoA-binding domain; PDB: 3NKL_B.
Probab=80.03 E-value=7 Score=30.56 Aligned_cols=78 Identities=17% Similarity=0.255 Sum_probs=43.3
Q ss_pred hHHHHHHHH---hCCCeEEEEecCCCccccccccccCceeEeec-CCchhHHHhhhhcCCCCE--EEEEcCChHHHHHHH
Q 028115 2 GKAVIKAAD---AAGLELVPVSFGTEEESGQKVEVCGKEIQVHG-LSDRESVLASVFDKYPNM--IVVDYTVPAAVNGNA 75 (213)
Q Consensus 2 G~~i~~~~~---~~~~elv~~~~~~~~~~g~~~~~~~~~v~i~~-~~~~~~~l~~~~~~~~d~--VvIDFS~p~~~~~~~ 75 (213)
|+.+.+.+. ..|++++|.++..+...+..+ .++++.+ .+++.+.+.+ ...|. |.++.+..+.+.+.+
T Consensus 89 ~~~~~~~l~~~~~~g~~vvg~~d~~~~~~~~~~----~~~~~lg~~~~l~~~~~~---~~id~v~ial~~~~~~~i~~ii 161 (175)
T PF13727_consen 89 GRELAEALRSNPRLGYRVVGFVDDDPSDRGPEI----DGVPVLGDLDDLPELVRE---HDIDEVIIALPWSEEEQIKRII 161 (175)
T ss_dssp HHHHHHHHHH--SSSEEEEEEE-S-GGGTT-EE----TTEEEE--GGGHHHHHHH---HT--EEEE--TTS-HHHHHHHH
T ss_pred HHHHHHHHHhhhhcCceEEEEEeCchhhccCcc----cCceeEcCHHHHHHHHHh---CCCCEEEEEcCccCHHHHHHHH
Confidence 456666665 357899999886653322221 1344432 3455555543 46773 445667788899999
Q ss_pred HHHHhcCCCEE
Q 028115 76 ELYSKVGVPFV 86 (213)
Q Consensus 76 ~~~~~~g~~~V 86 (213)
+.|.++++.+=
T Consensus 162 ~~~~~~~v~v~ 172 (175)
T PF13727_consen 162 EELENHGVRVR 172 (175)
T ss_dssp HHHHTTT-EEE
T ss_pred HHHHhCCCEEE
Confidence 99999998763
No 71
>PRK14046 malate--CoA ligase subunit beta; Provisional
Probab=79.97 E-value=19 Score=33.67 Aligned_cols=71 Identities=13% Similarity=0.153 Sum_probs=46.7
Q ss_pred CCCEEEEEcC----ChH-HHHHHHHHHHh--cCCCEEEEcCCCCHHHHHHHHHccCCcEEEccChhHHHHHHHHHHHH
Q 028115 57 YPNMIVVDYT----VPA-AVNGNAELYSK--VGVPFVMGTTGGDRVRLHETIENSNVYAVISPQMGKQVVAFLAAMEI 127 (213)
Q Consensus 57 ~~d~VvIDFS----~p~-~~~~~~~~~~~--~g~~~ViGTTG~~~~~~~~~~~~~~~~~v~a~N~SlGv~ll~~l~~~ 127 (213)
+.|.|+|-+. ..+ .+...++.+.+ .++|+|+...|-..++.+++-+.+++|++.+.+|.-.+....++++.
T Consensus 310 ~VdaVlv~i~ggi~~~~~vA~~Ii~a~~~~~~~kPvvv~l~G~~~e~~~~iL~~~Gipvf~~~~~~~a~~~~v~~~~~ 387 (392)
T PRK14046 310 NVKAILVNIFAGINRCDWVAEGVVQAAREVGIDVPLVVRLAGTNVEEGRKILAESGLPIITADTLAEAAEKAVEAWKG 387 (392)
T ss_pred CCCEEEEEcCCCCCCHHHHHHHHHHHHHhcCCCCcEEEEcCCCCHHHHHHHHHHcCCCeeecCCHHHHHHHHHHHHhh
Confidence 3464555443 222 33334444445 68999999988666666665556789999999999887665555443
No 72
>PRK13535 erythrose 4-phosphate dehydrogenase; Provisional
Probab=79.85 E-value=8.7 Score=35.32 Aligned_cols=89 Identities=18% Similarity=0.187 Sum_probs=58.1
Q ss_pred ChHHHHHHHHh----CCCeEEEEec--------------CCC-------ccccccccccCceeEeecCCchhHHHhhhhc
Q 028115 1 MGKAVIKAADA----AGLELVPVSF--------------GTE-------EESGQKVEVCGKEIQVHGLSDRESVLASVFD 55 (213)
Q Consensus 1 MG~~i~~~~~~----~~~elv~~~~--------------~~~-------~~~g~~~~~~~~~v~i~~~~~~~~~l~~~~~ 55 (213)
+||.+.+.+.+ ++++|++.=+ ... +..|..+.+.|..+.+....++++. ...+
T Consensus 12 IGR~~lr~l~e~~~~~~l~vvaind~~~~~~~ayll~ydS~hg~~~~~v~~~~~~l~v~g~~i~v~~~~~p~~~--~w~~ 89 (336)
T PRK13535 12 IGRNVLRALYESGRRAEITVVAINELADAEGMAHLLKYDTSHGRFAWDVRQERDQLFVGDDAIRLLHERDIASL--PWRE 89 (336)
T ss_pred HHHHHHHHHHhcCCCCceEEEEecCCCCHHHHHHHhhhccCCCCCCCcEEecCCEEEECCEEEEEEEcCCcccC--cccc
Confidence 48999999864 3688886542 110 1123333445556777644444431 1222
Q ss_pred CCCCEEEEEcCChHHHHHHHHHHHhcCCCEEEEcCCC
Q 028115 56 KYPNMIVVDYTVPAAVNGNAELYSKVGVPFVMGTTGG 92 (213)
Q Consensus 56 ~~~d~VvIDFS~p~~~~~~~~~~~~~g~~~ViGTTG~ 92 (213)
..+| ++++-|-.....+....+++.|...|+=+.=+
T Consensus 90 ~gvD-iVle~tG~~~s~~~a~~~l~aGAk~V~iSap~ 125 (336)
T PRK13535 90 LGVD-VVLDCTGVYGSREDGEAHIAAGAKKVLFSHPG 125 (336)
T ss_pred cCCC-EEEEccchhhhHHHHHHHHHcCCEEEEecCCc
Confidence 4688 89999999999999999999998777766444
No 73
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=79.79 E-value=8.5 Score=34.09 Aligned_cols=23 Identities=30% Similarity=0.449 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHhcCCC--EEEEcCC
Q 028115 69 AAVNGNAELYSKVGVP--FVMGTTG 91 (213)
Q Consensus 69 ~~~~~~~~~~~~~g~~--~ViGTTG 91 (213)
+.+..+++++++.|+. +|.||||
T Consensus 21 ~~l~~l~~~l~~~Gv~gi~v~GstG 45 (289)
T cd00951 21 DAYRAHVEWLLSYGAAALFAAGGTG 45 (289)
T ss_pred HHHHHHHHHHHHcCCCEEEECcCCc
Confidence 4566666666666655 3456666
No 74
>cd06358 PBP1_NHase Type I periplasmic-binding protein of the nitrile hydratase (NHase) system that selectively converts nitriles to corresponding amides. This group includes the type I periplasmic-binding protein of the nitrile hydratase (NHase) system that selectively converts nitriles to corresponding amides, which are subsequently converted by amidases to yield free carboxylic acids and ammonia. NHases from bacteria and fungi have been purified and characterized. In Rhodococcus sp., the nitrile hydratase operon consists of six genes encoding NHase regulator 2, NHase regulator 1, amidase, NHase alpha subunit, NHase beta subunit, and NHase activator. The operon produces a constitutive hydratase that has a broad substrate spectrum: aliphatic and aromatic nitriles, mononitriles and dinitriles, hydroxynitriles and amino-nitriles, and a constitutive amidase of equally low substrate specificity. NHases are metalloenzymes containing either cobalt or iron, and therefore can be classified int
Probab=79.66 E-value=16 Score=31.95 Aligned_cols=56 Identities=13% Similarity=0.081 Sum_probs=36.4
Q ss_pred CchhHHHhhhhcCCCCEEEEEcCChHHHHHHHHHHHhcCCC--EEEEcCCCCHHHHHHH
Q 028115 44 SDRESVLASVFDKYPNMIVVDYTVPAAVNGNAELYSKVGVP--FVMGTTGGDRVRLHET 100 (213)
Q Consensus 44 ~~~~~~l~~~~~~~~d~VvIDFS~p~~~~~~~~~~~~~g~~--~ViGTTG~~~~~~~~~ 100 (213)
.|+...+..+.+.+||.|++.+..++ ....++.+.+.|.. ++.++++|++..+..+
T Consensus 174 ~d~~~~v~~l~~~~pd~v~~~~~~~~-~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~ 231 (333)
T cd06358 174 TDFTSVLERIAASGADAVLSTLVGQD-AVAFNRQFAAAGLRDRILRLSPLMDENMLLAS 231 (333)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCCc-hHHHHHHHHHcCCCccCceeecccCHHHHHhc
Confidence 46666677777778994344444444 45788888888875 4555666776655444
No 75
>cd06348 PBP1_ABC_ligand_binding_like_13 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=79.47 E-value=21 Score=31.29 Aligned_cols=54 Identities=15% Similarity=0.284 Sum_probs=38.6
Q ss_pred CCchhHHHhhhhcCCCCEEEEEcCChHHHHHHHHHHHhcCCC-EEEEcCCCCHHHH
Q 028115 43 LSDRESVLASVFDKYPNMIVVDYTVPAAVNGNAELYSKVGVP-FVMGTTGGDRVRL 97 (213)
Q Consensus 43 ~~~~~~~l~~~~~~~~d~VvIDFS~p~~~~~~~~~~~~~g~~-~ViGTTG~~~~~~ 97 (213)
..|+...+.++...+|| +||=...+......++.+.+.|.. .++|+.+++..++
T Consensus 178 ~~d~~~~v~~i~~~~~d-~vi~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 232 (344)
T cd06348 178 DTDFQAQITAVLNSKPD-LIVISALAADGGNLVRQLRELGYNGLIVGGNGFNTPNV 232 (344)
T ss_pred CCCHHHHHHHHHhcCCC-EEEECCcchhHHHHHHHHHHcCCCCceeccccccCHHH
Confidence 35777777778778899 455555666667899999998865 4677777765444
No 76
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=79.12 E-value=27 Score=33.19 Aligned_cols=49 Identities=14% Similarity=0.093 Sum_probs=29.4
Q ss_pred EEEcCCCC-----HHHHHHHHHccCCcEEEccChhHHHHHHHHHHHHHHHhcCCCCCCCcEEEEecc
Q 028115 86 VMGTTGGD-----RVRLHETIENSNVYAVISPQMGKQVVAFLAAMEIMAEQFPGAFSGYSLQVLESH 147 (213)
Q Consensus 86 ViGTTG~~-----~~~~~~~~~~~~~~~v~a~N~SlGv~ll~~l~~~aa~~l~~~~~~~dieI~E~H 147 (213)
|||.||=+ .+-+..+-+..+.+.....| +|+.++.. +. ++.++-|+|.-
T Consensus 119 vIgITGTnGKTTTt~li~~iL~~~g~~~~~~Gn--iG~p~~~~--------~~---~~~~~~VlE~s 172 (488)
T PRK03369 119 WLVVTGTNGKTTTTSMLHAMLIAAGRRSVLCGN--IGSPVLDV--------LD---EPAELLAVELS 172 (488)
T ss_pred EEEEECCCcHHHHHHHHHHHHHHcCCceEEeCC--CchHHHHh--------cc---CCCCEEEEECC
Confidence 57777764 23355555556667777788 67666432 12 34577777763
No 77
>COG4091 Predicted homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=79.02 E-value=5.9 Score=37.17 Aligned_cols=83 Identities=24% Similarity=0.323 Sum_probs=52.8
Q ss_pred ChHHHHHHHH-hCCCeEEEEecCCCcc-------cc-ccc---cc---cCc-----eeEeecCCchhHHHhhhhcCCCCE
Q 028115 1 MGKAVIKAAD-AAGLELVPVSFGTEEE-------SG-QKV---EV---CGK-----EIQVHGLSDRESVLASVFDKYPNM 60 (213)
Q Consensus 1 MG~~i~~~~~-~~~~elv~~~~~~~~~-------~g-~~~---~~---~~~-----~v~i~~~~~~~~~l~~~~~~~~d~ 60 (213)
||+.++..+. =+||++++..+..... .| .+. +. ..+ .-++..++|.+..+.. ...|
T Consensus 28 mG~~ivtQi~~m~Gm~vvaisd~~~~~ak~A~~~ag~~~~~~~e~~~~s~~a~Ai~aGKi~vT~D~~~i~~~---~~Id- 103 (438)
T COG4091 28 MGTGIVTQIASMPGMEVVAISDRNLDAAKRAYDRAGGPKIEAVEADDASKMADAIEAGKIAVTDDAELIIAN---DLID- 103 (438)
T ss_pred cchHHHHHHhhcCCceEEEEecccchHHHHHHHHhcCCcccccccchhhHHHHHHhcCcEEEecchhhhhcC---Ccce-
Confidence 8999988887 6999999987743311 11 110 10 000 1133334566654421 2346
Q ss_pred EEEEcC-ChHHHHHHHHHHHhcCCCEEE
Q 028115 61 IVVDYT-VPAAVNGNAELYSKVGVPFVM 87 (213)
Q Consensus 61 VvIDFS-~p~~~~~~~~~~~~~g~~~Vi 87 (213)
||||-| .|+.-.++.-.+..+++.+|+
T Consensus 104 vIIdATG~p~vGA~~~l~Ai~h~KHlVM 131 (438)
T COG4091 104 VIIDATGVPEVGAKIALEAILHGKHLVM 131 (438)
T ss_pred EEEEcCCCcchhhHhHHHHHhcCCeEEE
Confidence 999998 577777888889999999998
No 78
>TIGR02082 metH 5-methyltetrahydrofolate--homocysteine methyltransferase. S-methyltransferase (MetE, EC 2.1.1.14, the cobalamin-independent methionine synthase) and betaine-homocysteine methyltransferase.
Probab=78.56 E-value=28 Score=37.31 Aligned_cols=81 Identities=15% Similarity=0.160 Sum_probs=53.5
Q ss_pred hHHHhhhhcCCCCEEEEEcC---ChHHHHHHHHHHHhcC--CCEEEEcCCCCHHHHHH-HHHccCCcEEEccChhHHHHH
Q 028115 47 ESVLASVFDKYPNMIVVDYT---VPAAVNGNAELYSKVG--VPFVMGTTGGDRVRLHE-TIENSNVYAVISPQMGKQVVA 120 (213)
Q Consensus 47 ~~~l~~~~~~~~d~VvIDFS---~p~~~~~~~~~~~~~g--~~~ViGTTG~~~~~~~~-~~~~~~~~~v~a~N~SlGv~l 120 (213)
++.++...+.+||.|.+=+. +-..+.+.++...+.| +|+++|=...+++.-+. +.....-+.+|+.|-+-+|.+
T Consensus 773 e~iv~aa~e~~~diVgLS~Lmt~t~~~m~~vi~~L~~~g~~v~v~vGGa~~s~~~~~~~i~~~~~gad~y~~dA~~av~~ 852 (1178)
T TIGR02082 773 EKILEAAKDHNADVIGLSGLITPSLDEMKEVAEEMNRRGITIPLLIGGAATSKTHTAVKIAPIYKGPVVYVLDASRAVTV 852 (1178)
T ss_pred HHHHHHHHHhCCCEEEEcCcccccHHHHHHHHHHHHhcCCCceEEEeccccchhHHHhhhhhhccCCeEEecCHHHHHHH
Confidence 33444444568995555553 3455666777777765 78888888887754333 333333468999999999998
Q ss_pred HHHHHHH
Q 028115 121 FLAAMEI 127 (213)
Q Consensus 121 l~~l~~~ 127 (213)
..+++..
T Consensus 853 ~~~l~~~ 859 (1178)
T TIGR02082 853 MDTLMSA 859 (1178)
T ss_pred HHHHhCc
Confidence 8887643
No 79
>cd06355 PBP1_FmdD_like Periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF). This group includes the periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF), found in Methylophilus methylotrophus, and its homologs from other bacteria. FmdD, a type I periplasmic binding protein, is induced by short-chain amides and urea and repressed by excess ammonia, while FmdE and FmdF are hydrophobic transmembrane proteins. FmdDEF is predicted to be an ATP-dependent transporter and closely resembles the periplasmic binding protein and the two transmembrane proteins present in various hydrophobic amino acid-binding transport systems.
Probab=78.46 E-value=12 Score=33.19 Aligned_cols=56 Identities=14% Similarity=0.135 Sum_probs=39.9
Q ss_pred CCchhHHHhhhhcCCCCEEEEEcCChHHHHHHHHHHHhcCCC----EEEEcCCCCHHHHHHH
Q 028115 43 LSDRESVLASVFDKYPNMIVVDYTVPAAVNGNAELYSKVGVP----FVMGTTGGDRVRLHET 100 (213)
Q Consensus 43 ~~~~~~~l~~~~~~~~d~VvIDFS~p~~~~~~~~~~~~~g~~----~ViGTTG~~~~~~~~~ 100 (213)
..|+...+..+...+|| +|+-+..+..+...++.+.+.|.. .++++ ++...++..+
T Consensus 174 ~~D~~~~v~~l~~~~pd-~v~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~-~~~~~~~~~~ 233 (348)
T cd06355 174 HTDFQSIINKIKAAKPD-VVVSTVNGDSNVAFFKQLKAAGITASKVPVLSF-SVAEEELRGI 233 (348)
T ss_pred hhhHHHHHHHHHHhCCC-EEEEeccCCchHHHHHHHHHcCCCccCCeeEEc-cccHHHHhhc
Confidence 34677667777777899 677788888888899999999974 34554 4554455444
No 80
>cd06267 PBP1_LacI_sugar_binding_like Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. In most cases, ligands are monosaccharide including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor. In this case, the domain sugar binding changes the DNA binding activity of the repressor domain.
Probab=78.28 E-value=33 Score=27.83 Aligned_cols=38 Identities=13% Similarity=0.158 Sum_probs=26.4
Q ss_pred hhhcCCCCEEEEEcCChHHHHHHHHHHHhcCCCEEEEcCC
Q 028115 52 SVFDKYPNMIVVDYTVPAAVNGNAELYSKVGVPFVMGTTG 91 (213)
Q Consensus 52 ~~~~~~~d~VvIDFS~p~~~~~~~~~~~~~g~~~ViGTTG 91 (213)
.+...++|.+++.-+.+.... ++.+.+.|+|+|.-.+.
T Consensus 50 ~~~~~~~d~iii~~~~~~~~~--~~~~~~~~ipvv~~~~~ 87 (264)
T cd06267 50 LLLSRRVDGIILAPSRLDDEL--LEELAALGIPVVLVDRP 87 (264)
T ss_pred HHHHcCcCEEEEecCCcchHH--HHHHHHcCCCEEEeccc
Confidence 333457885566665666555 88899999999887554
No 81
>TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978.
Probab=77.82 E-value=55 Score=29.84 Aligned_cols=109 Identities=20% Similarity=0.222 Sum_probs=60.9
Q ss_pred hHHHHHHHHhCCCe---EEEEecCCCccccccccccCceeEeecCCchhHHHhhhhcCCCCEEEEEcCChHHHHHHHHHH
Q 028115 2 GKAVIKAADAAGLE---LVPVSFGTEEESGQKVEVCGKEIQVHGLSDRESVLASVFDKYPNMIVVDYTVPAAVNGNAELY 78 (213)
Q Consensus 2 G~~i~~~~~~~~~e---lv~~~~~~~~~~g~~~~~~~~~v~i~~~~~~~~~l~~~~~~~~d~VvIDFS~p~~~~~~~~~~ 78 (213)
|+++++.+.+++++ |+.... ....|+.+...+..+.+.+ ++. .++ ...| +++.-+-.....+.++.+
T Consensus 12 G~eLi~lL~~~~hp~~~l~~~as--~~~~g~~~~~~~~~~~~~~---~~~--~~~--~~~D-~v~~a~g~~~s~~~a~~~ 81 (339)
T TIGR01296 12 GQEMLKILEERNFPIDKLVLLAS--DRSAGRKVTFKGKELEVNE---AKI--ESF--EGID-IALFSAGGSVSKEFAPKA 81 (339)
T ss_pred HHHHHHHHHhCCCChhhEEEEec--cccCCCeeeeCCeeEEEEe---CCh--HHh--cCCC-EEEECCCHHHHHHHHHHH
Confidence 88999988765554 433212 1234555533333333322 221 112 3578 788888788888899988
Q ss_pred HhcCCCEE-------------EEcCCCCHHHHHHHHHccCCcEEEccC-hhHHHHHHHH
Q 028115 79 SKVGVPFV-------------MGTTGGDRVRLHETIENSNVYAVISPQ-MGKQVVAFLA 123 (213)
Q Consensus 79 ~~~g~~~V-------------iGTTG~~~~~~~~~~~~~~~~~v~a~N-~SlGv~ll~~ 123 (213)
.+.|+.+| .+..+++.++++. .....++-.|| +..++.+..+
T Consensus 82 ~~~G~~VID~ss~~R~~~~~p~~vpevN~~~i~~---~~~~~iianp~C~~t~~~l~l~ 137 (339)
T TIGR01296 82 AKCGAIVIDNTSAFRMDPDVPLVVPEVNLEDLKE---FNTKGIIANPNCSTIQMVVVLK 137 (339)
T ss_pred HHCCCEEEECCHHHhCCCCCCEEeCCcCHHHHhh---CccCCEEECCCcHHHHHHHHHH
Confidence 89898655 3444555555432 21234777788 4444444333
No 82
>cd06292 PBP1_LacI_like_10 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=77.59 E-value=40 Score=28.05 Aligned_cols=38 Identities=16% Similarity=0.213 Sum_probs=24.1
Q ss_pred HhhhhcCCCCEEEEEcC----ChHHHHHHHHHHHhcCCCEEEE
Q 028115 50 LASVFDKYPNMIVVDYT----VPAAVNGNAELYSKVGVPFVMG 88 (213)
Q Consensus 50 l~~~~~~~~d~VvIDFS----~p~~~~~~~~~~~~~g~~~ViG 88 (213)
+..+....+|.++| ++ .+....+.++.+.+.|+|+|.=
T Consensus 48 i~~l~~~~vdgiIi-~~~~~~~~~~~~~~i~~~~~~~ipvV~i 89 (273)
T cd06292 48 VEDLLARGVRGVVF-ISSLHADTHADHSHYERLAERGLPVVLV 89 (273)
T ss_pred HHHHHHcCCCEEEE-eCCCCCcccchhHHHHHHHhCCCCEEEE
Confidence 44444567895444 42 2334566788888999997754
No 83
>PRK05428 HPr kinase/phosphorylase; Provisional
Probab=77.55 E-value=12 Score=34.06 Aligned_cols=94 Identities=13% Similarity=0.133 Sum_probs=61.2
Q ss_pred hHHHHHHHHHHHhcCCCEEEEcCCCCH-HHHHHHHHccCCcEEEccChhHHHHHHHHHHHHHHHhcCC--CCCCCcEEEE
Q 028115 68 PAAVNGNAELYSKVGVPFVMGTTGGDR-VRLHETIENSNVYAVISPQMGKQVVAFLAAMEIMAEQFPG--AFSGYSLQVL 144 (213)
Q Consensus 68 p~~~~~~~~~~~~~g~~~ViGTTG~~~-~~~~~~~~~~~~~~v~a~N~SlGv~ll~~l~~~aa~~l~~--~~~~~dieI~ 144 (213)
++.-.+.++...+.+.|.+|=|-|++. +++.+++++.++|++.++.-| ..++.++...+.+.|.+ ..++-=++|-
T Consensus 68 ~~~r~~~~~~l~~~~~P~iIvt~~~~~p~~l~~~a~~~~ipll~t~~~t--~~~i~~l~~~L~~~la~~~~iHg~~v~V~ 145 (308)
T PRK05428 68 EEERKERLKKLFSLEPPCIIVTRGLEPPPELLEAAKEAGIPLLRTPLST--TRLISKLTNYLDRKLAPRTSVHGVLVDIY 145 (308)
T ss_pred HHHHHHHHHHHhCCCCCEEEEECcCCCCHHHHHHHHHcCCcEEEeCCcH--HHHHHHHHHHHHHHhhhcceeeeEEEEEC
Confidence 556778899999999999999999984 578899999999999998844 23444444444444421 0122222222
Q ss_pred ec--cCCCCCCc--hHHHHHHHH
Q 028115 145 ES--HQAGKLDT--SGTAKAVIS 163 (213)
Q Consensus 145 E~--HH~~K~Da--SGTA~~la~ 163 (213)
.. ==..+.-+ |.+|+.|.+
T Consensus 146 G~GvLi~G~SG~GKSelALeLi~ 168 (308)
T PRK05428 146 GIGVLITGESGIGKSETALELIK 168 (308)
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 21 11234444 778888765
No 84
>cd06350 PBP1_GPCR_family_C_like Ligand-binding domain of membrane-bound glutamate receptors that mediate excitatory transmission on the cellular surface through initial binding of glutamate and are categorized into ionotropic glutamate receptors (iGluRs) and metabotropic glutamate receptors (mGluRs). Ligand-binding domain of membrane-bound glutamate receptors that mediate excitatory transmission on the cellular surface through initial binding of glutamate and are categorized into ionotropic glutamate receptors (iGluRs) and metabotropic glutamate receptors (mGluRs). The metabotropic glutamate receptors (mGluR) are key receptors in the modulation of excitatory synaptic transmission in the central nervous system. The mGluRs are coupled to G proteins and are thus distinct from the iGluRs which internally contain ligand-gated ion channels. The mGluR structure is divided into three regions: the extracellular region, the seven-spanning transmembrane region and the cytoplasmic region. The extr
Probab=77.45 E-value=14 Score=32.25 Aligned_cols=51 Identities=14% Similarity=0.083 Sum_probs=40.9
Q ss_pred CchhHHHhhhhcCCCCEEEEEcCChHHHHHHHHHHHhcCC--CEEEEcCCCCHH
Q 028115 44 SDRESVLASVFDKYPNMIVVDYTVPAAVNGNAELYSKVGV--PFVMGTTGGDRV 95 (213)
Q Consensus 44 ~~~~~~l~~~~~~~~d~VvIDFS~p~~~~~~~~~~~~~g~--~~ViGTTG~~~~ 95 (213)
.|+...+..+....+| +||=|..+..+...++.+.+.|. ..+++++||...
T Consensus 204 ~d~~~~l~~l~~~~~~-vvv~~~~~~~~~~~~~~a~~~g~~~~~~i~~~~~~~~ 256 (348)
T cd06350 204 EDIKRILKKLKSSTAR-VIVVFGDEDDALRLFCEAYKLGMTGKYWIISTDWDTS 256 (348)
T ss_pred HHHHHHHHHHHhCCCc-EEEEEeCcHHHHHHHHHHHHhCCCCeEEEEEccccCc
Confidence 3667777777777788 78888888889999999999987 467888898654
No 85
>cd06312 PBP1_ABC_sugar_binding_like_4 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=77.44 E-value=31 Score=28.89 Aligned_cols=39 Identities=21% Similarity=0.291 Sum_probs=27.0
Q ss_pred hhhhcCCCCEEEEEcCChHHHHHHHHHHHhcCCCEEEEc
Q 028115 51 ASVFDKYPNMIVVDYTVPAAVNGNAELYSKVGVPFVMGT 89 (213)
Q Consensus 51 ~~~~~~~~d~VvIDFS~p~~~~~~~~~~~~~g~~~ViGT 89 (213)
+.+....+|.++|-...++.+.+.++.+.+.|+|+|.=-
T Consensus 51 ~~l~~~~vdgiii~~~~~~~~~~~l~~~~~~~ipvV~~~ 89 (271)
T cd06312 51 EAAIAAKPDGIVVTIPDPDALDPAIKRAVAAGIPVISFN 89 (271)
T ss_pred HHHHHhCCCEEEEeCCChHHhHHHHHHHHHCCCeEEEeC
Confidence 333345788556655566666778888999999987753
No 86
>PLN02522 ATP citrate (pro-S)-lyase
Probab=77.37 E-value=15 Score=36.49 Aligned_cols=71 Identities=15% Similarity=0.253 Sum_probs=44.8
Q ss_pred eeEeecCCchhHHHhhhhcCCCCEEEEEcCChHH-HHHHHHHHHhcCCC-EEEEcCCCCHHHHHHH---HHccCCcEEEc
Q 028115 37 EIQVHGLSDRESVLASVFDKYPNMIVVDYTVPAA-VNGNAELYSKVGVP-FVMGTTGGDRVRLHET---IENSNVYAVIS 111 (213)
Q Consensus 37 ~v~i~~~~~~~~~l~~~~~~~~d~VvIDFS~p~~-~~~~~~~~~~~g~~-~ViGTTG~~~~~~~~~---~~~~~~~~v~a 111 (213)
++|+++ +.+++.++ ...+| +.|=|-.|.. ....++.|.+.|++ +||=|.||.+.+.+++ ++..++ -|+-
T Consensus 62 ~iPVf~--tv~eA~~~--~~~~~-~~vifvp~~~a~da~lEa~~a~GIk~~VIiteGfpe~d~~~l~~~Ar~~g~-rlIG 135 (608)
T PLN02522 62 AIPVHG--SIEAACKA--HPTAD-VFINFASFRSAAASSMEALKQPTIRVVAIIAEGVPESDTKQLIAYARANNK-VVIG 135 (608)
T ss_pred Cccccc--hHHHHHHh--CCCCc-EEEEeCChHHhHHHHHHHHhhCCCCEEEEECCCCChhhHHHHHHHHHHcCC-EEEC
Confidence 688874 66666543 12467 7888887755 55577777778987 5566778876444444 333333 3666
Q ss_pred cC
Q 028115 112 PQ 113 (213)
Q Consensus 112 ~N 113 (213)
||
T Consensus 136 PN 137 (608)
T PLN02522 136 PA 137 (608)
T ss_pred CC
Confidence 66
No 87
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=77.30 E-value=14 Score=30.66 Aligned_cols=85 Identities=20% Similarity=0.268 Sum_probs=48.8
Q ss_pred ChHHHHHHHHhCCCeEEEEecCCCccccccccccCceeEeecCCchhHHHhhhhcCCCCEEEEEcCC------hHHHHHH
Q 028115 1 MGKAVIKAADAAGLELVPVSFGTEEESGQKVEVCGKEIQVHGLSDRESVLASVFDKYPNMIVVDYTV------PAAVNGN 74 (213)
Q Consensus 1 MG~~i~~~~~~~~~elv~~~~~~~~~~g~~~~~~~~~v~i~~~~~~~~~l~~~~~~~~d~VvIDFS~------p~~~~~~ 74 (213)
.|+.+++++.+.++++.+.+-..++..-+.+.-.|..+-..+.+|.+...+.+ ...| +++-.+. .+.....
T Consensus 10 ~G~~v~~~L~~~~~~V~~l~R~~~~~~~~~l~~~g~~vv~~d~~~~~~l~~al--~g~d-~v~~~~~~~~~~~~~~~~~l 86 (233)
T PF05368_consen 10 QGRSVVRALLSAGFSVRALVRDPSSDRAQQLQALGAEVVEADYDDPESLVAAL--KGVD-AVFSVTPPSHPSELEQQKNL 86 (233)
T ss_dssp HHHHHHHHHHHTTGCEEEEESSSHHHHHHHHHHTTTEEEES-TT-HHHHHHHH--TTCS-EEEEESSCSCCCHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCcEEEEeccchhhhhhhhcccceEeecccCCHHHHHHHH--cCCc-eEEeecCcchhhhhhhhhhH
Confidence 38899999988899988765533221111111112222222233444433322 3678 6676666 4567788
Q ss_pred HHHHHhcCCCEEEE
Q 028115 75 AELYSKVGVPFVMG 88 (213)
Q Consensus 75 ~~~~~~~g~~~ViG 88 (213)
+++|.+.|++.++=
T Consensus 87 i~Aa~~agVk~~v~ 100 (233)
T PF05368_consen 87 IDAAKAAGVKHFVP 100 (233)
T ss_dssp HHHHHHHT-SEEEE
T ss_pred HHhhhccccceEEE
Confidence 99999999998873
No 88
>TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan.
Probab=77.17 E-value=12 Score=33.89 Aligned_cols=78 Identities=15% Similarity=0.227 Sum_probs=48.6
Q ss_pred ChHHHHHHHH-hCCCeEEEEecCCCccccccc-ccc------Cc-----eeEeecCCchhHHHhhhhcCCCCEEEEEcCC
Q 028115 1 MGKAVIKAAD-AAGLELVPVSFGTEEESGQKV-EVC------GK-----EIQVHGLSDRESVLASVFDKYPNMIVVDYTV 67 (213)
Q Consensus 1 MG~~i~~~~~-~~~~elv~~~~~~~~~~g~~~-~~~------~~-----~v~i~~~~~~~~~l~~~~~~~~d~VvIDFS~ 67 (213)
||+.+++.+. .+.++|+++++... ..|+.+ ... +. .+.+.. .+.+ . ...+| +++..+-
T Consensus 12 ~G~~L~~~l~~~~~~~l~~v~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~----~--~~~~D-vVf~a~p 82 (341)
T TIGR00978 12 VGQKFVKLLAKHPYFELAKVVASPR-SAGKRYGEAVKWIEPGDMPEYVRDLPIVE-PEPV----A--SKDVD-IVFSALP 82 (341)
T ss_pred HHHHHHHHHHhCCCceEEEEEEChh-hcCCcchhhccccccCCCccccceeEEEe-CCHH----H--hccCC-EEEEeCC
Confidence 7999999887 56799998766432 234443 111 11 112211 1111 1 13578 7788787
Q ss_pred hHHHHHHHHHHHhcCCCEEE
Q 028115 68 PAAVNGNAELYSKVGVPFVM 87 (213)
Q Consensus 68 p~~~~~~~~~~~~~g~~~Vi 87 (213)
+....++.+.+.+.|+.+|.
T Consensus 83 ~~~s~~~~~~~~~~G~~VID 102 (341)
T TIGR00978 83 SEVAEEVEPKLAEAGKPVFS 102 (341)
T ss_pred HHHHHHHHHHHHHCCCEEEE
Confidence 78888899999999998765
No 89
>COG0057 GapA Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism]
Probab=76.99 E-value=9.9 Score=35.05 Aligned_cols=127 Identities=21% Similarity=0.235 Sum_probs=70.4
Q ss_pred ChHHHHHHHH-hC-CCeEEEEec-CCC--------------ccccc-----c-ccccCceeEeecCCchhHHHhhhhcCC
Q 028115 1 MGKAVIKAAD-AA-GLELVPVSF-GTE--------------EESGQ-----K-VEVCGKEIQVHGLSDRESVLASVFDKY 57 (213)
Q Consensus 1 MG~~i~~~~~-~~-~~elv~~~~-~~~--------------~~~g~-----~-~~~~~~~v~i~~~~~~~~~l~~~~~~~ 57 (213)
+||.+.+++. +. ++|+|+.-+ ..+ .+.++ + +.+.+.++++....+++. |. ..+..
T Consensus 12 IGR~v~ra~~~~~~dieVVaInd~t~~~~~A~LlkyDs~hg~f~~~v~~~~~~~~v~g~~I~v~~~~~p~~-l~-w~d~g 89 (335)
T COG0057 12 IGRLVARAALERDGDIEVVAINDLTDPDYLAHLLKYDSVHGRFDGEVEVKDDALVVNGKGIKVLAERDPAN-LP-WADLG 89 (335)
T ss_pred HHHHHHHHHHhCCCCeEEEEEecCCCHHHHHHHHhhcccCCCCCCcccccCCeEEECCceEEEEecCChHH-CC-ccccC
Confidence 5999999998 55 699999877 111 11121 1 134455788877666544 32 12334
Q ss_pred CCEEEEEcCChHHHHHHHHHHHhcC--CCEEEEcCCCCHHHHHHH-----HHccCCcEEEccChhHHHHHHHHHHHHHHH
Q 028115 58 PNMIVVDYTVPAAVNGNAELYSKVG--VPFVMGTTGGDRVRLHET-----IENSNVYAVISPQMGKQVVAFLAAMEIMAE 130 (213)
Q Consensus 58 ~d~VvIDFS~p~~~~~~~~~~~~~g--~~~ViGTTG~~~~~~~~~-----~~~~~~~~v~a~N~SlGv~ll~~l~~~aa~ 130 (213)
.| |+||-|---.-.++.+..++.| +.++++..+-++ ...+ .+.-...=-+-+|-|---|-|-.+++.+-+
T Consensus 90 vd-iVve~Tg~f~~~e~~~~hl~agGaKkV~isap~~~~--~~~vv~gvn~~~~~~~~~iVsnaSCTTNcLap~~kvl~d 166 (335)
T COG0057 90 VD-IVVECTGKFTGREKAEKHLKAGGAKKVLISAPGKDD--VATVVYGVNHNYYDAGHTIVSNASCTTNCLAPVAKVLND 166 (335)
T ss_pred cc-EEEECCCCccchhhHHHHHHhcCCCEEEEcCCCCCC--ccEEEEeccccccCCCCcEEEEccchhhhhHHHHHHHHH
Confidence 67 8999877666667777555554 556675555432 1111 000000122335566666666666666554
Q ss_pred hc
Q 028115 131 QF 132 (213)
Q Consensus 131 ~l 132 (213)
.|
T Consensus 167 ~f 168 (335)
T COG0057 167 AF 168 (335)
T ss_pred hc
Confidence 44
No 90
>PRK09287 6-phosphogluconate dehydrogenase; Validated
Probab=76.88 E-value=17 Score=34.77 Aligned_cols=23 Identities=26% Similarity=0.283 Sum_probs=19.0
Q ss_pred ChHHHHHHHHhCCCeEEEEecCCC
Q 028115 1 MGKAVIKAADAAGLELVPVSFGTE 24 (213)
Q Consensus 1 MG~~i~~~~~~~~~elv~~~~~~~ 24 (213)
||+.+++.+.+.|++|+ +.++.+
T Consensus 1 MG~~mA~nL~~~G~~V~-v~nrt~ 23 (459)
T PRK09287 1 MGKNLALNIASHGYTVA-VYNRTP 23 (459)
T ss_pred CcHHHHHHHHhCCCeEE-EECCCH
Confidence 99999999999999987 456544
No 91
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=76.81 E-value=29 Score=30.36 Aligned_cols=104 Identities=11% Similarity=0.001 Sum_probs=59.7
Q ss_pred ChHHHHHHHHhCC----CeEEEEecCCCccccccccccCceeEeecCCchhHHHhhhhcCCCCEEEEEcCChHHHHHHHH
Q 028115 1 MGKAVIKAADAAG----LELVPVSFGTEEESGQKVEVCGKEIQVHGLSDRESVLASVFDKYPNMIVVDYTVPAAVNGNAE 76 (213)
Q Consensus 1 MG~~i~~~~~~~~----~elv~~~~~~~~~~g~~~~~~~~~v~i~~~~~~~~~l~~~~~~~~d~VvIDFS~p~~~~~~~~ 76 (213)
||+.+++.+.+.+ .+++.. ++.+...-+.+.....++.+. .+.++++ ..+| ++|=-..|..+.+.++
T Consensus 12 mG~ala~~L~~~g~~~~~~V~~~-~r~~~~~~~~l~~~~~~~~~~--~~~~e~~-----~~aD-vVilavpp~~~~~vl~ 82 (277)
T PRK06928 12 MADMIATKLLETEVATPEEIILY-SSSKNEHFNQLYDKYPTVELA--DNEAEIF-----TKCD-HSFICVPPLAVLPLLK 82 (277)
T ss_pred HHHHHHHHHHHCCCCCcccEEEE-eCCcHHHHHHHHHHcCCeEEe--CCHHHHH-----hhCC-EEEEecCHHHHHHHHH
Confidence 7999999887555 566543 332211001110000012221 3444433 2578 7887777888888877
Q ss_pred HHH---hcCCCEEEEcCCCCHHHHHHHHHccCCcEEE-ccChh
Q 028115 77 LYS---KVGVPFVMGTTGGDRVRLHETIENSNVYAVI-SPQMG 115 (213)
Q Consensus 77 ~~~---~~g~~~ViGTTG~~~~~~~~~~~~~~~~~v~-a~N~S 115 (213)
.+. +.+..+|.-+-|.+.++++++.. +.+++. =||..
T Consensus 83 ~l~~~l~~~~~ivS~~aGi~~~~l~~~~~--~~~vvR~MPN~~ 123 (277)
T PRK06928 83 DCAPVLTPDRHVVSIAAGVSLDDLLEITP--GLQVSRLIPSLT 123 (277)
T ss_pred HHHhhcCCCCEEEEECCCCCHHHHHHHcC--CCCEEEEeCccH
Confidence 664 35678899999999888877542 234544 36643
No 92
>cd06300 PBP1_ABC_sugar_binding_like_1 Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily. Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their substrate specificity is not known in detail.
Probab=76.69 E-value=37 Score=28.33 Aligned_cols=37 Identities=22% Similarity=0.319 Sum_probs=27.8
Q ss_pred hhhcCCCCEEEEEcCChHHHHHHHHHHHhcCCCEEEE
Q 028115 52 SVFDKYPNMIVVDYTVPAAVNGNAELYSKVGVPFVMG 88 (213)
Q Consensus 52 ~~~~~~~d~VvIDFS~p~~~~~~~~~~~~~g~~~ViG 88 (213)
.+...++|.+++.-+.++.+.+.++.+.+.|+|+|.-
T Consensus 55 ~~~~~~vdgiIi~~~~~~~~~~~l~~~~~~~iPvv~~ 91 (272)
T cd06300 55 NLIAQGVDAIIINPASPTALNPVIEEACEAGIPVVSF 91 (272)
T ss_pred HHHHcCCCEEEEeCCChhhhHHHHHHHHHCCCeEEEE
Confidence 3334578866776667777777888999999999974
No 93
>cd06334 PBP1_ABC_ligand_binding_like_1 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=76.43 E-value=51 Score=29.55 Aligned_cols=47 Identities=13% Similarity=0.096 Sum_probs=34.7
Q ss_pred CchhHHHhhhhcCCCCEEEEEcCChHHHHHHHHHHHhcCCC-EEEEcCC
Q 028115 44 SDRESVLASVFDKYPNMIVVDYTVPAAVNGNAELYSKVGVP-FVMGTTG 91 (213)
Q Consensus 44 ~~~~~~l~~~~~~~~d~VvIDFS~p~~~~~~~~~~~~~g~~-~ViGTTG 91 (213)
.|+...+.++...+|| +|+=...+......++.+.+.|.+ .++|+.+
T Consensus 182 ~D~~~~v~~i~~~~pd-~V~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~ 229 (351)
T cd06334 182 NDQKAQWLQIRRSGPD-YVILWGWGVMNPVAIKEAKRVGLDDKFIGNWW 229 (351)
T ss_pred ccHHHHHHHHHHcCCC-EEEEecccchHHHHHHHHHHcCCCceEEEeec
Confidence 4777777788778899 666677777788899999998875 3444443
No 94
>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional
Probab=76.42 E-value=59 Score=29.40 Aligned_cols=106 Identities=14% Similarity=0.135 Sum_probs=60.6
Q ss_pred hHHHHHHHHhC---CCeEEEEecCCCccccccccccCceeEeecCCchhHHHhhhhcCCCCEEEEEcCChHHHHHHHHHH
Q 028115 2 GKAVIKAADAA---GLELVPVSFGTEEESGQKVEVCGKEIQVHGLSDRESVLASVFDKYPNMIVVDYTVPAAVNGNAELY 78 (213)
Q Consensus 2 G~~i~~~~~~~---~~elv~~~~~~~~~~g~~~~~~~~~v~i~~~~~~~~~l~~~~~~~~d~VvIDFS~p~~~~~~~~~~ 78 (213)
|+.+++.+.++ .++|++.... ...|+.+.+.+..+.+.+ ++. ..+ ...| ++|..+-.....+.+..+
T Consensus 14 G~~l~~lL~~~~hp~~~l~~l~s~--~~~g~~l~~~g~~i~v~d---~~~--~~~--~~vD-vVf~A~g~g~s~~~~~~~ 83 (334)
T PRK14874 14 GREMLNILEERNFPVDKLRLLASA--RSAGKELSFKGKELKVED---LTT--FDF--SGVD-IALFSAGGSVSKKYAPKA 83 (334)
T ss_pred HHHHHHHHHhCCCCcceEEEEEcc--ccCCCeeeeCCceeEEee---CCH--HHH--cCCC-EEEECCChHHHHHHHHHH
Confidence 88999998764 4567765432 234555543333444432 221 112 2578 778666666688888888
Q ss_pred HhcCCCEE-------------EEcCCCCHHHHHHHHHccCCcEEEccC-hhHHHHH
Q 028115 79 SKVGVPFV-------------MGTTGGDRVRLHETIENSNVYAVISPQ-MGKQVVA 120 (213)
Q Consensus 79 ~~~g~~~V-------------iGTTG~~~~~~~~~~~~~~~~~v~a~N-~SlGv~l 120 (213)
.+.|+.+| .|-.+++.++++... +..++-.|| +.-++.+
T Consensus 84 ~~~G~~VIDlS~~~R~~~~~p~~lpevn~~~i~~~~---~~~iVanp~C~~t~~~l 136 (334)
T PRK14874 84 AAAGAVVIDNSSAFRMDPDVPLVVPEVNPEALAEHR---KKGIIANPNCSTIQMVV 136 (334)
T ss_pred HhCCCEEEECCchhhcCCCCCeEcCCcCHHHHhhhh---cCCeEECccHHHHHHHH
Confidence 89998555 345556666554311 124777777 4443433
No 95
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=76.39 E-value=12 Score=33.33 Aligned_cols=12 Identities=8% Similarity=-0.056 Sum_probs=5.8
Q ss_pred CCCc-hHHHHHHH
Q 028115 151 KLDT-SGTAKAVI 162 (213)
Q Consensus 151 K~Da-SGTA~~la 162 (213)
+.+- ..+-.+|+
T Consensus 142 g~~l~~~~l~~L~ 154 (303)
T PRK03620 142 NAVLTADTLARLA 154 (303)
T ss_pred CCCCCHHHHHHHH
Confidence 4444 44555554
No 96
>cd06341 PBP1_ABC_ligand_binding_like_7 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=76.34 E-value=50 Score=28.77 Aligned_cols=56 Identities=13% Similarity=0.064 Sum_probs=42.1
Q ss_pred CchhHHHhhhhcCCCCEEEEEcCChHHHHHHHHHHHhcCC--CEEEEcCCCCHHHHHHH
Q 028115 44 SDRESVLASVFDKYPNMIVVDYTVPAAVNGNAELYSKVGV--PFVMGTTGGDRVRLHET 100 (213)
Q Consensus 44 ~~~~~~l~~~~~~~~d~VvIDFS~p~~~~~~~~~~~~~g~--~~ViGTTG~~~~~~~~~ 100 (213)
.|....+.++...+|| +|+=.+.+......++.+.+.|+ |++++.++++.+-++..
T Consensus 175 ~d~~~~~~~i~~~~pd-aV~~~~~~~~a~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~ 232 (341)
T cd06341 175 PDPTPQAQQAAAAGAD-AIITVLDAAVCASVLKAVRAAGLTPKVVLSGTCYDPALLAAP 232 (341)
T ss_pred CCHHHHHHHHHhcCCC-EEEEecChHHHHHHHHHHHHcCCCCCEEEecCCCCHHHHHhc
Confidence 4666777777777899 67767777788999999999876 57778888876644444
No 97
>PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=75.96 E-value=11 Score=34.31 Aligned_cols=82 Identities=17% Similarity=0.285 Sum_probs=52.0
Q ss_pred ChHHHHHHHH-hCCCeEEEEecCCCcccccccc----cc------C--ceeEeecCCchhHHHhhhhcCCCCEEEEEcCC
Q 028115 1 MGKAVIKAAD-AAGLELVPVSFGTEEESGQKVE----VC------G--KEIQVHGLSDRESVLASVFDKYPNMIVVDYTV 67 (213)
Q Consensus 1 MG~~i~~~~~-~~~~elv~~~~~~~~~~g~~~~----~~------~--~~v~i~~~~~~~~~l~~~~~~~~d~VvIDFS~ 67 (213)
+|+.+++.+. .+.++|++.. .+....|+.+. .. + ..+.+.. .+.+. + .++| ++++.+.
T Consensus 15 iG~~l~~~L~~~p~~el~~~~-~s~~~~G~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~----~--~~~D-vVf~a~p 85 (349)
T PRK08664 15 VGQRFVQLLANHPWFEVTALA-ASERSAGKTYGEAVRWQLDGPIPEEVADMEVVS-TDPEA----V--DDVD-IVFSALP 85 (349)
T ss_pred HHHHHHHHHHcCCCceEEEEE-cChhhcCCcccccccccccccccccccceEEEe-CCHHH----h--cCCC-EEEEeCC
Confidence 5899999987 6889999872 22334454441 10 0 1122221 12222 1 2578 7888888
Q ss_pred hHHHHHHHHHHHhcCCCEEEEcCC
Q 028115 68 PAAVNGNAELYSKVGVPFVMGTTG 91 (213)
Q Consensus 68 p~~~~~~~~~~~~~g~~~ViGTTG 91 (213)
.....++++.+.+.|+.+|.-+.-
T Consensus 86 ~~~s~~~~~~~~~~G~~vIDls~~ 109 (349)
T PRK08664 86 SDVAGEVEEEFAKAGKPVFSNASA 109 (349)
T ss_pred hhHHHHHHHHHHHCCCEEEECCch
Confidence 888888999999999988776653
No 98
>cd00423 Pterin_binding Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=75.93 E-value=12 Score=32.55 Aligned_cols=49 Identities=16% Similarity=0.180 Sum_probs=38.7
Q ss_pred EEEEcCChHHHHHHHHHHHhcCCCEEEEcCCCCH-HHHHHHHHccCCcEEEccC
Q 028115 61 IVVDYTVPAAVNGNAELYSKVGVPFVMGTTGGDR-VRLHETIENSNVYAVISPQ 113 (213)
Q Consensus 61 VvIDFS~p~~~~~~~~~~~~~g~~~ViGTTG~~~-~~~~~~~~~~~~~~v~a~N 113 (213)
+.||-++|+.+... ++.|.++|=-.||++. +++-.+....+.|+++.++
T Consensus 79 iSIDT~~~~v~~aa----L~~g~~iINdis~~~~~~~~~~l~~~~~~~vV~m~~ 128 (258)
T cd00423 79 ISVDTFNAEVAEAA----LKAGADIINDVSGGRGDPEMAPLAAEYGAPVVLMHM 128 (258)
T ss_pred EEEeCCcHHHHHHH----HHhCCCEEEeCCCCCCChHHHHHHHHcCCCEEEECc
Confidence 79999999976654 4556999999999974 6777777777888877654
No 99
>PRK15404 leucine ABC transporter subunit substrate-binding protein LivK; Provisional
Probab=75.91 E-value=31 Score=31.14 Aligned_cols=55 Identities=15% Similarity=0.126 Sum_probs=39.9
Q ss_pred CchhHHHhhhhcCCCCEEEEEcCChHHHHHHHHHHHhcCCCE-EEEcCCCCHHHHHH
Q 028115 44 SDRESVLASVFDKYPNMIVVDYTVPAAVNGNAELYSKVGVPF-VMGTTGGDRVRLHE 99 (213)
Q Consensus 44 ~~~~~~l~~~~~~~~d~VvIDFS~p~~~~~~~~~~~~~g~~~-ViGTTG~~~~~~~~ 99 (213)
.|+...+.++...+|| +|+=...+..+...++.+.+.|... ++|+.++...++..
T Consensus 203 ~D~~~~v~~l~~~~~d-~v~~~~~~~~~~~~~k~~~~~G~~~~~i~~~~~~~~~~~~ 258 (369)
T PRK15404 203 KDFSALIAKLKKENVD-FVYYGGYHPEMGQILRQAREAGLKTQFMGPEGVGNKSLSN 258 (369)
T ss_pred CchHHHHHHHHhcCCC-EEEECCCchHHHHHHHHHHHCCCCCeEEecCcCCCHHHHH
Confidence 4777777788788899 6665666667778899999998663 67777766555433
No 100
>PLN02358 glyceraldehyde-3-phosphate dehydrogenase
Probab=75.82 E-value=16 Score=33.61 Aligned_cols=84 Identities=20% Similarity=0.159 Sum_probs=52.1
Q ss_pred ChHHHHHHHH-hCCCeEEEEecCCC----------------cccc--------ccccccCceeEeecCCchhHHHhhhhc
Q 028115 1 MGKAVIKAAD-AAGLELVPVSFGTE----------------EESG--------QKVEVCGKEIQVHGLSDRESVLASVFD 55 (213)
Q Consensus 1 MG~~i~~~~~-~~~~elv~~~~~~~----------------~~~g--------~~~~~~~~~v~i~~~~~~~~~l~~~~~ 55 (213)
|||...+.+. .++.+|++..|... +..+ +.+.+.|..+.+....|++.. ...+
T Consensus 16 IGr~~~r~~~~~~~velvaI~D~~~~~~~~a~ll~yDs~~g~~~~~~v~~~~g~~l~~~g~~i~v~~~~~p~~~--~w~~ 93 (338)
T PLN02358 16 IGRLVARVVLQRDDVELVAVNDPFITTEYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGIRNPEDI--PWGE 93 (338)
T ss_pred HHHHHHHHHhhCCCcEEEEEeCCCCCHHHHHHhheeecCCCCcCCCeEEECCCCEEEECCEEEEEEEcCCcccC--cccc
Confidence 6898999876 68899999876211 1111 112223445666554444331 1112
Q ss_pred CCCCEEEEEcCChHHHHHHHHHHHhcCCCEEE
Q 028115 56 KYPNMIVVDYTVPAAVNGNAELYSKVGVPFVM 87 (213)
Q Consensus 56 ~~~d~VvIDFS~p~~~~~~~~~~~~~g~~~Vi 87 (213)
...| ++|+.|-.....+.....++.|...|+
T Consensus 94 ~gvD-iVie~tG~~~s~~~a~~hl~aGak~Vi 124 (338)
T PLN02358 94 AGAD-FVVESTGVFTDKDKAAAHLKGGAKKVV 124 (338)
T ss_pred cCCC-EEEEcccchhhHHHHHHHHHCCCEEEE
Confidence 3677 889988888888888888888874443
No 101
>PRK06091 membrane protein FdrA; Validated
Probab=75.65 E-value=12 Score=36.81 Aligned_cols=68 Identities=10% Similarity=-0.043 Sum_probs=50.7
Q ss_pred CchhHHHhhhhcCCCCEEEEEcCChHHHHHHHHHHHhcCCCEEEEcCCCCHHHHHHHHHccC-Cc-EEEccCh
Q 028115 44 SDRESVLASVFDKYPNMIVVDYTVPAAVNGNAELYSKVGVPFVMGTTGGDRVRLHETIENSN-VY-AVISPQM 114 (213)
Q Consensus 44 ~~~~~~l~~~~~~~~d~VvIDFS~p~~~~~~~~~~~~~g~~~ViGTTG~~~~~~~~~~~~~~-~~-~v~a~N~ 114 (213)
....++++++ ..+| ++|=+.-++.+.+.++.|.+.|+.+||-|.||..+..+++.+.++ .. .++-||-
T Consensus 106 ~t~~~a~~~l--pe~D-LAvIsVPa~~v~~al~ea~~~G~~viI~S~gfg~~~E~~L~e~Ar~~GlrvmGPNC 175 (555)
T PRK06091 106 RRWDSACQKL--PDAN-LALISVAGEYAAELAEQALDRNLNVMMFSDNVTLEDEIRLKTRAREKGLLVMGPDC 175 (555)
T ss_pred ccHHHHHhcC--CCCC-EEEEecCHHHHHHHHHHHHHcCCeEEEEcCCCCHHHHHHHHHHHHHcCCEEECCCC
Confidence 3555555443 2357 777788899999999999999999999999998655555555544 44 4788998
No 102
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=75.43 E-value=43 Score=30.93 Aligned_cols=127 Identities=20% Similarity=0.205 Sum_probs=63.3
Q ss_pred ChHHHHHHHHhCCCeEEEEecCCCccccccc-cccCceeEeecCCchhHHHhhhhcCCCCEEEE----EcCChHHHHHHH
Q 028115 1 MGKAVIKAADAAGLELVPVSFGTEEESGQKV-EVCGKEIQVHGLSDRESVLASVFDKYPNMIVV----DYTVPAAVNGNA 75 (213)
Q Consensus 1 MG~~i~~~~~~~~~elv~~~~~~~~~~g~~~-~~~~~~v~i~~~~~~~~~l~~~~~~~~d~VvI----DFS~p~~~~~~~ 75 (213)
+|..+++.+.+.|.++++. +.......... .+...++.+....+....++ ..+|.||+ .+++| .+
T Consensus 16 ~G~s~a~~l~~~G~~V~~~-d~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~----~~~d~vV~s~gi~~~~~-----~~ 85 (447)
T PRK02472 16 SGYAAAKLLHKLGANVTVN-DGKPFSENPEAQELLEEGIKVICGSHPLELLD----EDFDLMVKNPGIPYTNP-----MV 85 (447)
T ss_pred HHHHHHHHHHHCCCEEEEE-cCCCccchhHHHHHHhcCCEEEeCCCCHHHhc----CcCCEEEECCCCCCCCH-----HH
Confidence 4788888888999988764 53321111111 12222344332122222221 13673332 45555 34
Q ss_pred HHHHhcCCCE--------------EEEcCCCC-----HHHHHHHHHccCCcEEEccChhHHHHHHHHHHHHHHHhcCCCC
Q 028115 76 ELYSKVGVPF--------------VMGTTGGD-----RVRLHETIENSNVYAVISPQMGKQVVAFLAAMEIMAEQFPGAF 136 (213)
Q Consensus 76 ~~~~~~g~~~--------------ViGTTG~~-----~~~~~~~~~~~~~~~v~a~N~SlGv~ll~~l~~~aa~~l~~~~ 136 (213)
+.|.+.|+|+ +||-||=. .+-+..+-+..+.......| +|+.+.. +. ...
T Consensus 86 ~~a~~~~i~v~~~~el~~~~~~~~~I~VTGT~GKTTTt~ll~~iL~~~g~~~~~~Gn--ig~p~~~-~~----~~~---- 154 (447)
T PRK02472 86 EKALEKGIPIITEVELAYLISEAPIIGITGSNGKTTTTTLIGEMLKAGGQHALLAGN--IGYPASE-VA----QKA---- 154 (447)
T ss_pred HHHHHCCCcEEeHHHHHHHhcCCCEEEEeCCCchHHHHHHHHHHHHHCCCCeEEEcc--cChhhHH-HH----hcC----
Confidence 5555555554 47888864 23455555555655577778 4544322 11 111
Q ss_pred CCCcEEEEeccC
Q 028115 137 SGYSLQVLESHQ 148 (213)
Q Consensus 137 ~~~dieI~E~HH 148 (213)
...|+-|+|.-+
T Consensus 155 ~~~~~~V~E~ss 166 (447)
T PRK02472 155 TADDTLVMELSS 166 (447)
T ss_pred CCCCEEEEEcCc
Confidence 245777778743
No 103
>cd06342 PBP1_ABC_LIVBP_like Type I periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine). This subgroup includes the type I periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine). This subgroup also includes a leucine-specific binding protein (or LivK), which is very similar in sequence and structure to leucine-isoleucine-valine binding protein (LIVBP). ABC-type active transport systems are transmembrane proteins that function in the transport of diverse sets of substrates across extra- and intracellular membranes, including carbohydrates, amino acids, inorganic ions, dipeptides and oligopeptides, metabolic products, lipids and sterols, and heme, to name a few.
Probab=75.36 E-value=35 Score=29.47 Aligned_cols=56 Identities=14% Similarity=0.119 Sum_probs=39.0
Q ss_pred CchhHHHhhhhcCCCCEEEEEcCChHHHHHHHHHHHhcCCCE-EEEcCCCCHHHHHHH
Q 028115 44 SDRESVLASVFDKYPNMIVVDYTVPAAVNGNAELYSKVGVPF-VMGTTGGDRVRLHET 100 (213)
Q Consensus 44 ~~~~~~l~~~~~~~~d~VvIDFS~p~~~~~~~~~~~~~g~~~-ViGTTG~~~~~~~~~ 100 (213)
.|....+.++...+|| +||=...+......++.+.+.|... ++|+.++..+.+..+
T Consensus 177 ~d~~~~l~~i~~~~~~-~vi~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 233 (334)
T cd06342 177 TDFSAILTKIKAANPD-AVFFGGYYPEAGPLVRQMRQLGLKAPFMGGDGLCDPEFIKI 233 (334)
T ss_pred ccHHHHHHHHHhcCCC-EEEEcCcchhHHHHHHHHHHcCCCCcEEecCccCCHHHHHH
Confidence 4666667777777899 5555556666777889999988764 678877765555443
No 104
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=74.83 E-value=11 Score=33.40 Aligned_cols=70 Identities=21% Similarity=0.117 Sum_probs=42.3
Q ss_pred ChHHHHHHHHhCCCeEEEEecCCCccccccccccCceeEeecCCchhHHHhhhhcCCCCEEEEEcCChHHHHHHHHHHHh
Q 028115 1 MGKAVIKAADAAGLELVPVSFGTEEESGQKVEVCGKEIQVHGLSDRESVLASVFDKYPNMIVVDYTVPAAVNGNAELYSK 80 (213)
Q Consensus 1 MG~~i~~~~~~~~~elv~~~~~~~~~~g~~~~~~~~~v~i~~~~~~~~~l~~~~~~~~d~VvIDFS~p~~~~~~~~~~~~ 80 (213)
||+.+++.+.+.|+++. .+++.. ..++++++ ..+| +||=......+.+.++....
T Consensus 15 ~G~~lA~~l~~~G~~V~-~~~r~~------------------~~~~~~~~-----~~ad-vvi~~vp~~~~~~v~~~l~~ 69 (308)
T PRK14619 15 WGSTLAGLASANGHRVR-VWSRRS------------------GLSLAAVL-----ADAD-VIVSAVSMKGVRPVAEQVQA 69 (308)
T ss_pred HHHHHHHHHHHCCCEEE-EEeCCC------------------CCCHHHHH-----hcCC-EEEEECChHHHHHHHHHHHH
Confidence 79999999888888876 344332 12444433 2578 55544444455555555433
Q ss_pred ----cCCCEEEEcCCCCHH
Q 028115 81 ----VGVPFVMGTTGGDRV 95 (213)
Q Consensus 81 ----~g~~~ViGTTG~~~~ 95 (213)
.+..+|..|+|++.+
T Consensus 70 ~~~~~~~ivi~~s~gi~~~ 88 (308)
T PRK14619 70 LNLPPETIIVTATKGLDPE 88 (308)
T ss_pred hcCCCCcEEEEeCCcccCC
Confidence 356678888888743
No 105
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=74.81 E-value=15 Score=32.56 Aligned_cols=15 Identities=7% Similarity=-0.008 Sum_probs=7.6
Q ss_pred CCCCCc-hHHHHHHHH
Q 028115 149 AGKLDT-SGTAKAVIS 163 (213)
Q Consensus 149 ~~K~Da-SGTA~~la~ 163 (213)
+...|- ..+-.+|++
T Consensus 138 ~~g~~l~~~~~~~La~ 153 (296)
T TIGR03249 138 RDNAVLNADTLERLAD 153 (296)
T ss_pred CCCCCCCHHHHHHHHh
Confidence 344454 555555554
No 106
>TIGR00679 hpr-ser Hpr(Ser) kinase/phosphatase. The hprK gene of Enterococcus faecalis encodes a bifunctional enzyme: the HPr kinase/phosphatase
Probab=74.65 E-value=16 Score=33.25 Aligned_cols=49 Identities=8% Similarity=-0.029 Sum_probs=41.8
Q ss_pred hHHHHHHHHHHHhcCCCEEEEcCCCCH-HHHHHHHHccCCcEEEccChhH
Q 028115 68 PAAVNGNAELYSKVGVPFVMGTTGGDR-VRLHETIENSNVYAVISPQMGK 116 (213)
Q Consensus 68 p~~~~~~~~~~~~~g~~~ViGTTG~~~-~~~~~~~~~~~~~~v~a~N~Sl 116 (213)
++.-.+.++...+.+.|.+|=|-|+.. +++.+++++.++|++.++-.+-
T Consensus 68 ~e~~~~~~~~~~~~~~P~iIvt~~~~~p~~l~~~a~~~~ip~l~t~~~~~ 117 (304)
T TIGR00679 68 EEEQKQIIHNLLTLNPPAIILSKSFTDPTVLLQVNETYQVPILKTDLFST 117 (304)
T ss_pred HHHHHHHHHHHhCCCCCEEEEECcCCCCHHHHHHHHHhCCcEEEeCCcHH
Confidence 455677899999999999999999984 5788899999999999887653
No 107
>PF13458 Peripla_BP_6: Periplasmic binding protein; PDB: 4EVS_A 4EY3_A 4EYG_B 4EYK_A 3H5L_B 3TD9_A 3EAF_A 1Z18_A 1Z17_A 2LIV_A ....
Probab=74.12 E-value=36 Score=29.39 Aligned_cols=58 Identities=17% Similarity=0.153 Sum_probs=43.8
Q ss_pred CchhHHHhhhhcCCCCEEEEEcCChHHHHHHHHHHHhcCCC---EEEEcCCCCHHHHHHHHH
Q 028115 44 SDRESVLASVFDKYPNMIVVDYTVPAAVNGNAELYSKVGVP---FVMGTTGGDRVRLHETIE 102 (213)
Q Consensus 44 ~~~~~~l~~~~~~~~d~VvIDFS~p~~~~~~~~~~~~~g~~---~ViGTTG~~~~~~~~~~~ 102 (213)
.|+...+.++...+|| +|+=++.+..+...++.+.+.+.. +.++.+++....+..+..
T Consensus 177 ~d~~~~~~~l~~~~~d-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 237 (343)
T PF13458_consen 177 TDFSALVQQLKSAGPD-VVVLAGDPADAAAFLRQLRQLGLKPPRIPLFGTSLDDASLQQLGG 237 (343)
T ss_dssp SHHHHHHHHHHHTTTS-EEEEESTHHHHHHHHHHHHHTTGCSCTEEEEEGGGSSHHHHHHHG
T ss_pred ccchHHHHHHhhcCCC-EEEEeccchhHHHHHHHHHhhccccccceeeccccCcHHHHHhhh
Confidence 4667777777777899 788888999999999999998877 445555565656666654
No 108
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=74.01 E-value=12 Score=32.94 Aligned_cols=51 Identities=16% Similarity=0.239 Sum_probs=40.3
Q ss_pred EEEEcCChHHHHHHHHHHHhcCCCEEEEcCCCC--HHHHHHHHHccCCcEEEccC
Q 028115 61 IVVDYTVPAAVNGNAELYSKVGVPFVMGTTGGD--RVRLHETIENSNVYAVISPQ 113 (213)
Q Consensus 61 VvIDFS~p~~~~~~~~~~~~~g~~~ViGTTG~~--~~~~~~~~~~~~~~~v~a~N 113 (213)
+.||-+.|+.+..-++.|. |.++|=-.+|.. .+++-.+....+.|+++-++
T Consensus 72 lsIDT~~~~v~eaaL~~~~--G~~iINsIs~~~~~~~~~~~l~~~~g~~vv~m~~ 124 (261)
T PRK07535 72 LCIDSPNPAAIEAGLKVAK--GPPLINSVSAEGEKLEVVLPLVKKYNAPVVALTM 124 (261)
T ss_pred EEEeCCCHHHHHHHHHhCC--CCCEEEeCCCCCccCHHHHHHHHHhCCCEEEEec
Confidence 8999999999888777754 999999999975 45666677777888876443
No 109
>PRK10206 putative oxidoreductase; Provisional
Probab=73.79 E-value=17 Score=32.93 Aligned_cols=107 Identities=12% Similarity=0.073 Sum_probs=66.0
Q ss_pred CCCeEEEEecCCCccccccccccCceeEeecCCchhHHHhhhhcCCCCEEEEEcCChHHHHHHHHHHHhcCCCEEEEcCC
Q 028115 12 AGLELVPVSFGTEEESGQKVEVCGKEIQVHGLSDRESVLASVFDKYPNMIVVDYTVPAAVNGNAELYSKVGVPFVMGTTG 91 (213)
Q Consensus 12 ~~~elv~~~~~~~~~~g~~~~~~~~~v~i~~~~~~~~~l~~~~~~~~d~VvIDFS~p~~~~~~~~~~~~~g~~~ViGTTG 91 (213)
++++|+++.++.++.. +....-+ +++++ +|.++.+++ .++| +|+--|-+..=.+.+..|+++|+++.+=-.=
T Consensus 26 ~~~~l~av~d~~~~~~-~~~~~~~-~~~~~--~~~~ell~~---~~iD-~V~I~tp~~~H~~~~~~al~aGkhVl~EKPl 97 (344)
T PRK10206 26 DSWHVAHIFRRHAKPE-EQAPIYS-HIHFT--SDLDEVLND---PDVK-LVVVCTHADSHFEYAKRALEAGKNVLVEKPF 97 (344)
T ss_pred CCEEEEEEEcCChhHH-HHHHhcC-CCccc--CCHHHHhcC---CCCC-EEEEeCCchHHHHHHHHHHHcCCcEEEecCC
Confidence 5799999888654211 1111001 13333 578887753 3678 5666777777889999999999999884332
Q ss_pred -CCHH---HHHHHHHccCCcEEEccC--hhHHHHHHHHHHH
Q 028115 92 -GDRV---RLHETIENSNVYAVISPQ--MGKQVVAFLAAME 126 (213)
Q Consensus 92 -~~~~---~~~~~~~~~~~~~v~a~N--~SlGv~ll~~l~~ 126 (213)
.+.+ ++.++++++++.+....| |.-.+..+.++++
T Consensus 98 a~~~~ea~~l~~~a~~~~~~l~v~~~~R~~p~~~~~k~li~ 138 (344)
T PRK10206 98 TPTLAEAKELFALAKSKGLTVTPYQNRRFDSCFLTAKKAIE 138 (344)
T ss_pred cCCHHHHHHHHHHHHHhCCEEEEEEeeeECHHHHHHHHHHH
Confidence 2333 455556666677666666 5555555555543
No 110
>PRK15425 gapA glyceraldehyde-3-phosphate dehydrogenase A; Provisional
Probab=72.93 E-value=18 Score=33.21 Aligned_cols=87 Identities=21% Similarity=0.194 Sum_probs=54.8
Q ss_pred ChHHHHHHHH-hCCCeEEEEecCCC---------------ccc------cccccccCceeEeecCCchhHHHhhhhcCCC
Q 028115 1 MGKAVIKAAD-AAGLELVPVSFGTE---------------EES------GQKVEVCGKEIQVHGLSDRESVLASVFDKYP 58 (213)
Q Consensus 1 MG~~i~~~~~-~~~~elv~~~~~~~---------------~~~------g~~~~~~~~~v~i~~~~~~~~~l~~~~~~~~ 58 (213)
+||.+.|++. ++++|+|+.=+... ... +..+.+.|..+.+....++++. ...+...
T Consensus 13 IGr~~~r~~~~~~~~~vvaiNd~~~~~~~ayll~yDs~hg~~~~~v~~~~~~l~v~g~~I~v~~~~dp~~~--~w~~~gv 90 (331)
T PRK15425 13 IGRIVFRAAQKRSDIEIVAINDLLDADYMAYMLKYDSTHGRFDGTVEVKDGHLIVNGKKIRVTAERDPANL--KWDEVGV 90 (331)
T ss_pred HHHHHHHHHHHCCCCEEEEEecCCCHHHHHHHHccccCCCCcCCcEEecCCEEEECCeEEEEEEcCChhhC--cccccCC
Confidence 4899999876 67899998754110 010 1111234445666643444441 1222367
Q ss_pred CEEEEEcCChHHHHHHHHHHHhcCCCEEEEcC
Q 028115 59 NMIVVDYTVPAAVNGNAELYSKVGVPFVMGTT 90 (213)
Q Consensus 59 d~VvIDFS~p~~~~~~~~~~~~~g~~~ViGTT 90 (213)
| ++|+.|-.....+.....++.|...|+=|.
T Consensus 91 D-iVle~tG~f~s~~~a~~hl~aGak~V~iSa 121 (331)
T PRK15425 91 D-VVAEATGLFLTDETARKHITAGAKKVVMTG 121 (331)
T ss_pred C-EEEEecchhhcHHHHHHHHHCCCEEEEeCC
Confidence 8 899999888888888888888877666553
No 111
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=72.87 E-value=43 Score=29.53 Aligned_cols=105 Identities=14% Similarity=0.089 Sum_probs=51.6
Q ss_pred ChHHHHHHHHhCCCeEEEEecCCCccccccccccCceeEeecCCchhHHHhhhhcCCCCEEEEEcCCh-HHHHHHHHHHH
Q 028115 1 MGKAVIKAADAAGLELVPVSFGTEEESGQKVEVCGKEIQVHGLSDRESVLASVFDKYPNMIVVDYTVP-AAVNGNAELYS 79 (213)
Q Consensus 1 MG~~i~~~~~~~~~elv~~~~~~~~~~g~~~~~~~~~v~i~~~~~~~~~l~~~~~~~~d~VvIDFS~p-~~~~~~~~~~~ 79 (213)
||+.+++.+.+.|++|+. .++.++... .+ ...++.+ .++++++.+.+ ..+| +||=...+ +.+.+.+..+.
T Consensus 11 MG~~mA~~L~~~g~~v~v-~dr~~~~~~-~~--~~~g~~~--~~~~~e~~~~~--~~~d-vvi~~v~~~~~~~~v~~~l~ 81 (301)
T PRK09599 11 MGGNMARRLLRGGHEVVG-YDRNPEAVE-AL--AEEGATG--ADSLEELVAKL--PAPR-VVWLMVPAGEITDATIDELA 81 (301)
T ss_pred HHHHHHHHHHHCCCeEEE-EECCHHHHH-HH--HHCCCee--cCCHHHHHhhc--CCCC-EEEEEecCCcHHHHHHHHHH
Confidence 899999999888998764 565442111 11 1112333 23555544321 1367 33333332 24555544333
Q ss_pred ---hcCCCEEEEcCCCCHH--HHHHHHHccCCcEEEccCh
Q 028115 80 ---KVGVPFVMGTTGGDRV--RLHETIENSNVYAVISPQM 114 (213)
Q Consensus 80 ---~~g~~~ViGTTG~~~~--~~~~~~~~~~~~~v~a~N~ 114 (213)
+.|.-+|..+|+.... ++.+..+..++..+=+|.+
T Consensus 82 ~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~~~dapvs 121 (301)
T PRK09599 82 PLLSPGDIVIDGGNSYYKDDIRRAELLAEKGIHFVDVGTS 121 (301)
T ss_pred hhCCCCCEEEeCCCCChhHHHHHHHHHHHcCCEEEeCCCC
Confidence 3344466666766532 3333333334444445543
No 112
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=72.71 E-value=13 Score=33.34 Aligned_cols=90 Identities=18% Similarity=0.156 Sum_probs=48.5
Q ss_pred hHHHHHHHHHHHhcCCC--EEEEcCC----CCHHHHHHH----HHcc-C-CcEEE---ccChhHHHHHHHHHHHHHHHhc
Q 028115 68 PAAVNGNAELYSKVGVP--FVMGTTG----GDRVRLHET----IENS-N-VYAVI---SPQMGKQVVAFLAAMEIMAEQF 132 (213)
Q Consensus 68 p~~~~~~~~~~~~~g~~--~ViGTTG----~~~~~~~~~----~~~~-~-~~~v~---a~N~SlGv~ll~~l~~~aa~~l 132 (213)
.+++..++++..+.|+. ++.|||| +|.+|..++ .+.. + +|++. +.|+.--+ ++++.+.+ +
T Consensus 24 ~~a~~~lv~~li~~Gv~gi~~~GttGE~~~Ls~eEr~~v~~~~v~~~~grvpviaG~g~~~t~eai----~lak~a~~-~ 98 (299)
T COG0329 24 EEALRRLVEFLIAAGVDGLVVLGTTGESPTLTLEERKEVLEAVVEAVGGRVPVIAGVGSNSTAEAI----ELAKHAEK-L 98 (299)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCCCccchhcCHHHHHHHHHHHHHHHCCCCcEEEecCCCcHHHHH----HHHHHHHh-c
Confidence 47788888999999987 7788999 445554443 2322 3 77665 22233322 33333332 2
Q ss_pred CCCCCCCcEEEEeccCCCCCCchHHHHHHHHHHHh
Q 028115 133 PGAFSGYSLQVLESHQAGKLDTSGTAKAVISCFQK 167 (213)
Q Consensus 133 ~~~~~~~dieI~E~HH~~K~DaSGTA~~la~~~~~ 167 (213)
+.|-=.+=..--.|.+..|...-...++++
T Consensus 99 -----Gad~il~v~PyY~k~~~~gl~~hf~~ia~a 128 (299)
T COG0329 99 -----GADGILVVPPYYNKPSQEGLYAHFKAIAEA 128 (299)
T ss_pred -----CCCEEEEeCCCCcCCChHHHHHHHHHHHHh
Confidence 234444444444555545655544444433
No 113
>PF02593 dTMP_synthase: Thymidylate synthase; InterPro: IPR003745 This entry describes proteins of unknown function.
Probab=72.61 E-value=52 Score=28.50 Aligned_cols=113 Identities=17% Similarity=0.180 Sum_probs=66.9
Q ss_pred chhHHHhhhhcCCCCEEEEEcC-ChHHHHHHHHHHHhcCCCEEEEcCCC----CHHHHHHHHHccCCcEEEccCh-h---
Q 028115 45 DRESVLASVFDKYPNMIVVDYT-VPAAVNGNAELYSKVGVPFVMGTTGG----DRVRLHETIENSNVYAVISPQM-G--- 115 (213)
Q Consensus 45 ~~~~~l~~~~~~~~d~VvIDFS-~p~~~~~~~~~~~~~g~~~ViGTTG~----~~~~~~~~~~~~~~~~v~a~N~-S--- 115 (213)
+.++-|.++ ..+| ++|.++ ||+.+++..+.|.+.|++.||.-++- ...++++.++..++-++..-.| |
T Consensus 41 ~pee~Lp~i--~~~D-l~I~y~lHPDl~~~l~~~~~e~g~kavIvp~~~~~~g~~~~lk~~~e~~gi~~~~P~~~CsL~~ 117 (217)
T PF02593_consen 41 DPEEYLPKI--PEAD-LLIAYGLHPDLTYELPEIAKEAGVKAVIVPSESPKPGLRRQLKKQLEEFGIEVEFPKPFCSLEE 117 (217)
T ss_pred ChHHHccCC--CCCC-EEEEeccCchhHHHHHHHHHHcCCCEEEEecCCCccchHHHHHHHHHhcCceeecCccccccCC
Confidence 444445443 3567 888865 78999999999999999999865542 2347777766654433332222 1
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCCcEEEEeccC----CCCCCc-hHHHHHHHHHHHh
Q 028115 116 KQVVAFLAAMEIMAEQFPGAFSGYSLQVLESHQ----AGKLDT-SGTAKAVISCFQK 167 (213)
Q Consensus 116 lGv~ll~~l~~~aa~~l~~~~~~~dieI~E~HH----~~K~Da-SGTA~~la~~~~~ 167 (213)
-|--.+.++ +++|+. +.+.+++ +-.. +=+.+| -|.+..+|+.|..
T Consensus 118 ~~~p~i~~F----~~~fGk--P~~ei~v-~~~~I~~V~VlR~aPCGsT~~vAk~l~G 167 (217)
T PF02593_consen 118 NGNPQIDEF----AEYFGK--PKVEIEV-ENGKIKDVKVLRSAPCGSTWFVAKRLIG 167 (217)
T ss_pred CCChhHHHH----HHHhCC--ceEEEEe-cCCcEEEEEEEecCCCccHHHHHHHhcC
Confidence 122233344 444653 4444443 3222 123567 8989999987754
No 114
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=72.53 E-value=62 Score=28.29 Aligned_cols=88 Identities=10% Similarity=-0.019 Sum_probs=45.3
Q ss_pred ChHHHHHHHHhCCCeEEEEecCCCccccccccccCceeEeecCCchhHHHhhhhcCCCCEEEEEcCChHHHHHHH---HH
Q 028115 1 MGKAVIKAADAAGLELVPVSFGTEEESGQKVEVCGKEIQVHGLSDRESVLASVFDKYPNMIVVDYTVPAAVNGNA---EL 77 (213)
Q Consensus 1 MG~~i~~~~~~~~~elv~~~~~~~~~~g~~~~~~~~~v~i~~~~~~~~~l~~~~~~~~d~VvIDFS~p~~~~~~~---~~ 77 (213)
||..+++.+.+.|+++.. +++.+...- . +...++.. ..+..++++ .+|+|++=-..+..+.+.+ +.
T Consensus 7 mG~~mA~~L~~~G~~V~v-~dr~~~~~~-~--l~~~g~~~--~~s~~~~~~-----~advVil~vp~~~~~~~v~~g~~~ 75 (288)
T TIGR01692 7 MGGPMAANLLKAGHPVRV-FDLFPDAVE-E--AVAAGAQA--AASPAEAAE-----GADRVITMLPAGQHVISVYSGDEG 75 (288)
T ss_pred hHHHHHHHHHhCCCeEEE-EeCCHHHHH-H--HHHcCCee--cCCHHHHHh-----cCCEEEEeCCChHHHHHHHcCcch
Confidence 899999998888888764 455432111 1 11112222 234554432 5684444444446566555 22
Q ss_pred HH---hcCCCEEEEcCCCCHHHHHHH
Q 028115 78 YS---KVGVPFVMGTTGGDRVRLHET 100 (213)
Q Consensus 78 ~~---~~g~~~ViGTTG~~~~~~~~~ 100 (213)
.. +.| .+||=+|+.+.+..+++
T Consensus 76 l~~~~~~g-~~vid~st~~p~~~~~~ 100 (288)
T TIGR01692 76 ILPKVAKG-SLLIDCSTIDPDSARKL 100 (288)
T ss_pred HhhcCCCC-CEEEECCCCCHHHHHHH
Confidence 22 233 35555566665543333
No 115
>PF02603 Hpr_kinase_N: HPr Serine kinase N terminus; InterPro: IPR011126 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents the N-terminal region of Hpr Serine/threonine kinase PtsK. This kinase is the sensor in a multicomponent phosphorelay system in control of carbon catabolic repression in bacteria []. This kinase in unusual in that it recognises the tertiary structure of its target and is a member of a novel family unrelated to any previously described protein phosphorylating enzymes []. X-ray analysis of the full-length crystalline enzyme from Staphylococcus xylosus at a resolution of 1.95 A shows the enzyme to consist of two clearly separated domains that are assembled in a hexameric structure resembling a three-bladed propeller. The blades are formed by two N-terminal domains each, and the compact central hub assembles the C-terminal kinase domains []. ; GO: 0000155 two-component sensor activity, 0004672 protein kinase activity, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay), 0006109 regulation of carbohydrate metabolic process; PDB: 1KNX_B 1KO7_A.
Probab=72.49 E-value=4.8 Score=31.50 Aligned_cols=49 Identities=18% Similarity=0.137 Sum_probs=36.3
Q ss_pred hHHHHHHHHHHHhcCCCEEEEcCCCC-HHHHHHHHHccCCcEEEccChhH
Q 028115 68 PAAVNGNAELYSKVGVPFVMGTTGGD-RVRLHETIENSNVYAVISPQMGK 116 (213)
Q Consensus 68 p~~~~~~~~~~~~~g~~~ViGTTG~~-~~~~~~~~~~~~~~~v~a~N~Sl 116 (213)
++.-.+.++...+.+.|.||=|-|+. .+++.+++++.++|++.++--|-
T Consensus 67 ~~~r~~~l~~l~~~~~P~iIvt~~~~~p~~l~e~a~~~~ipll~t~~~ts 116 (127)
T PF02603_consen 67 EEERKERLEKLFSYNPPCIIVTRGLEPPPELIELAEKYNIPLLRTPLSTS 116 (127)
T ss_dssp HHHHCCHHHHHCTTT-S-EEEETTT---HHHHHHHHHCT--EEEESS-HH
T ss_pred HHHHHHHHHHHhCCCCCEEEEECcCCCCHHHHHHHHHhCCcEEEcCCcHH
Confidence 55666889999999999999999998 46788999999999999987543
No 116
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=72.27 E-value=22 Score=34.00 Aligned_cols=23 Identities=17% Similarity=0.157 Sum_probs=18.4
Q ss_pred ChHHHHHHHHhCCCeEEEEecCCC
Q 028115 1 MGKAVIKAADAAGLELVPVSFGTE 24 (213)
Q Consensus 1 MG~~i~~~~~~~~~elv~~~~~~~ 24 (213)
||+.+++.+.+.|++|+. .++.+
T Consensus 10 MG~~mA~nL~~~G~~V~v-~drt~ 32 (467)
T TIGR00873 10 MGSNLALNMADHGFTVSV-YNRTP 32 (467)
T ss_pred HHHHHHHHHHhcCCeEEE-EeCCH
Confidence 899999999989998774 45443
No 117
>PRK07729 glyceraldehyde-3-phosphate dehydrogenase; Validated
Probab=72.24 E-value=18 Score=33.38 Aligned_cols=88 Identities=22% Similarity=0.202 Sum_probs=57.2
Q ss_pred ChHHHHHHHH-hCCCeEEEEecCCC---------------cc------ccccccccCceeEeecCCchhHHHhhhhcCCC
Q 028115 1 MGKAVIKAAD-AAGLELVPVSFGTE---------------EE------SGQKVEVCGKEIQVHGLSDRESVLASVFDKYP 58 (213)
Q Consensus 1 MG~~i~~~~~-~~~~elv~~~~~~~---------------~~------~g~~~~~~~~~v~i~~~~~~~~~l~~~~~~~~ 58 (213)
+||.+.+++. .+++|+|+.=+... .. .|..+.+.|..+.+....|+++. ...+...
T Consensus 13 IGR~~~r~~~~~~~~~vvaINd~~~~~~~ayll~yDS~hG~~~~~v~~~~~~l~v~g~~I~v~~~~dp~~~--~W~~~gv 90 (343)
T PRK07729 13 IGRMVFRKAIKESAFEIVAINASYPSETLAHLIKYDTVHGKFDGTVEAFEDHLLVDGKKIRLLNNRDPKEL--PWTDLGI 90 (343)
T ss_pred HHHHHHHHHhhcCCcEEEEecCCCCHHHHHHHhhhccCCCCCCCcEEecCCEEEECCEEEEEEEcCChhhC--cccccCC
Confidence 4899999876 67899998744110 01 11222344556777644455442 1222467
Q ss_pred CEEEEEcCChHHHHHHHHHHHhcCCCEEEEcCCC
Q 028115 59 NMIVVDYTVPAAVNGNAELYSKVGVPFVMGTTGG 92 (213)
Q Consensus 59 d~VvIDFS~p~~~~~~~~~~~~~g~~~ViGTTG~ 92 (213)
| ++++.|-.....+.....++.|...|+=+ ++
T Consensus 91 D-iVle~tG~f~s~~~a~~hl~aGak~V~iS-ap 122 (343)
T PRK07729 91 D-IVIEATGKFNSKEKAILHVEAGAKKVILT-AP 122 (343)
T ss_pred C-EEEEccchhhhHhHHHHHHHcCCeEEEeC-CC
Confidence 8 89999989888999999999998777765 54
No 118
>COG2201 CheB Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain [Cell motility and secretion / Signal transduction mechanisms]
Probab=72.02 E-value=19 Score=33.40 Aligned_cols=46 Identities=15% Similarity=0.273 Sum_probs=32.5
Q ss_pred HHhhhhcCCCCEEEEEcCCh--HHHHHHHHHHHhcCCCEEEEcCCCCHH
Q 028115 49 VLASVFDKYPNMIVVDYTVP--AAVNGNAELYSKVGVPFVMGTTGGDRV 95 (213)
Q Consensus 49 ~l~~~~~~~~d~VvIDFS~p--~~~~~~~~~~~~~g~~~ViGTTG~~~~ 95 (213)
+++.+.+..||+|.+|-.-| +.+.-.-+...+..+|+|+-++ ++.+
T Consensus 39 a~~~~~~~~PDVi~ld~emp~mdgl~~l~~im~~~p~pVimvss-lt~~ 86 (350)
T COG2201 39 AIDKVKKLKPDVITLDVEMPVMDGLEALRKIMRLRPLPVIMVSS-LTEE 86 (350)
T ss_pred HHHHHHhcCCCEEEEecccccccHHHHHHHHhcCCCCcEEEEec-cccc
Confidence 34445566899889999988 3455555555667999998877 5543
No 119
>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated
Probab=71.85 E-value=19 Score=32.83 Aligned_cols=82 Identities=12% Similarity=0.117 Sum_probs=52.0
Q ss_pred ChHHHHHHHH-hCCCeEEEEecCCCccccccc-c----ccCc-eeEeecCCchhHHHhhhhcCCCCEEEEEcCChHHHHH
Q 028115 1 MGKAVIKAAD-AAGLELVPVSFGTEEESGQKV-E----VCGK-EIQVHGLSDRESVLASVFDKYPNMIVVDYTVPAAVNG 73 (213)
Q Consensus 1 MG~~i~~~~~-~~~~elv~~~~~~~~~~g~~~-~----~~~~-~v~i~~~~~~~~~l~~~~~~~~d~VvIDFS~p~~~~~ 73 (213)
+|+.+++.+. .++++|++..++. ..|+.+ . +.+. ...+ ++++.. ....+| +++-.+-.....+
T Consensus 14 vG~~l~~~L~~~p~~elv~v~~~~--~~g~~l~~~~~~~~~~~~~~~---~~~~~~----~~~~vD-~Vf~alP~~~~~~ 83 (343)
T PRK00436 14 TGGELLRLLLNHPEVEIVAVTSRS--SAGKPLSDVHPHLRGLVDLVL---EPLDPE----ILAGAD-VVFLALPHGVSMD 83 (343)
T ss_pred HHHHHHHHHHcCCCceEEEEECcc--ccCcchHHhCcccccccCcee---ecCCHH----HhcCCC-EEEECCCcHHHHH
Confidence 5889999887 6799999877632 222222 1 1111 1122 122221 113578 7777888888899
Q ss_pred HHHHHHhcCCCEEEEcCCC
Q 028115 74 NAELYSKVGVPFVMGTTGG 92 (213)
Q Consensus 74 ~~~~~~~~g~~~ViGTTG~ 92 (213)
.+..+.+.|+++|--+.-|
T Consensus 84 ~v~~a~~aG~~VID~S~~f 102 (343)
T PRK00436 84 LAPQLLEAGVKVIDLSADF 102 (343)
T ss_pred HHHHHHhCCCEEEECCccc
Confidence 9999999999888777666
No 120
>cd06360 PBP1_alkylbenzenes_like Type I periplasmic binding component of active transport systems that are predicted be involved in anaerobic biodegradation of alkylbenzenes such as toluene and ethylbenzene. This group includes the type I periplasmic binding component of active transport systems that are predicted be involved in anaerobic biodegradation of alkylbenzenes such as toluene and ethylbenzene; their substrate specificity is not well characterized, however.
Probab=71.84 E-value=42 Score=29.00 Aligned_cols=52 Identities=21% Similarity=0.179 Sum_probs=37.7
Q ss_pred CCchhHHHhhhhcCCCCEEEEEcCChHHHHHHHHHHHhcCC--C-EEEEcCCCCHH
Q 028115 43 LSDRESVLASVFDKYPNMIVVDYTVPAAVNGNAELYSKVGV--P-FVMGTTGGDRV 95 (213)
Q Consensus 43 ~~~~~~~l~~~~~~~~d~VvIDFS~p~~~~~~~~~~~~~g~--~-~ViGTTG~~~~ 95 (213)
..|+...+..+.+.+|| +|+=+..+......++.+.+.|. . .++|+.++...
T Consensus 175 ~~d~~~~v~~~~~~~pd-~v~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 229 (336)
T cd06360 175 TSDFASYLAQIPDDVPD-AVFVFFAGGDAIKFVKQYDAAGLKAKIPLIGSGFLTDG 229 (336)
T ss_pred CcchHHHHHHHHhcCCC-EEEEecccccHHHHHHHHHHcCCccCCeEEecccccCH
Confidence 45777777788788899 55556667777888999999887 4 46676665443
No 121
>cd06327 PBP1_SBP_like_1 Periplasmic solute-binding domain of active transport proteins that belong to the type I periplasmic binding fold protein family. Periplasmic solute-binding domain of active transport proteins that belong to the type I periplasmic binding fold protein family. Solute binding proteins are the primary specific receptors that initiate uptake of a broad range of solutes, including amino acids, peptides and inorganic ions. The members are predicted to have a similar function to an active transport system for short chain amides and urea by sequence comparison and phylogenetic analysis. Moreover, this binding domain has high sequence identity to the family of hydrophobic amino acid transporters (HAAT), and thus may also be involved in transport of amino acids.
Probab=71.41 E-value=29 Score=30.34 Aligned_cols=56 Identities=16% Similarity=0.030 Sum_probs=37.1
Q ss_pred CchhHHHhhhhcCCCCEEEEEcCChHHHHHHHHHHHhcCC---CEEEEcCCCCHHHHHHHH
Q 028115 44 SDRESVLASVFDKYPNMIVVDYTVPAAVNGNAELYSKVGV---PFVMGTTGGDRVRLHETI 101 (213)
Q Consensus 44 ~~~~~~l~~~~~~~~d~VvIDFS~p~~~~~~~~~~~~~g~---~~ViGTTG~~~~~~~~~~ 101 (213)
.|+...+.++...+|| +|+=.+.+......++.+.+.|. ..+++++ +....+..+.
T Consensus 177 ~d~~~~v~~l~~~~~d-~v~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~ 235 (334)
T cd06327 177 SDFSSYLLQAQASGAD-VLVLANAGADTVNAIKQAAEFGLTKGQKLAGLL-LFLTDVHSLG 235 (334)
T ss_pred ccHHHHHHHHHhCCCC-EEEEeccchhHHHHHHHHHHhCCccCCcEEEec-ccHHHHHhhc
Confidence 4777777777777899 55556666667788899999887 3444544 4444544443
No 122
>PRK12938 acetyacetyl-CoA reductase; Provisional
Probab=70.70 E-value=27 Score=28.87 Aligned_cols=74 Identities=8% Similarity=-0.003 Sum_probs=46.7
Q ss_pred ChHHHHHHHHhCCCeEEEEecCCCccccccccccCceeEeecCCchhHHHhhhhcCCCC--EEEEEcCChHHHHHHHHHH
Q 028115 1 MGKAVIKAADAAGLELVPVSFGTEEESGQKVEVCGKEIQVHGLSDRESVLASVFDKYPN--MIVVDYTVPAAVNGNAELY 78 (213)
Q Consensus 1 MG~~i~~~~~~~~~elv~~~~~~~~~~g~~~~~~~~~v~i~~~~~~~~~l~~~~~~~~d--~VvIDFS~p~~~~~~~~~~ 78 (213)
+|+.+++.+.+.|..++....+... ..++.++++...... .+..|++.++.+.+.++.+
T Consensus 15 iG~~~a~~l~~~G~~vv~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 75 (246)
T PRK12938 15 IGTSICQRLHKDGFKVVAGCGPNSP-------------------RRVKWLEDQKALGFDFIASEGNVGDWDSTKAAFDKV 75 (246)
T ss_pred HHHHHHHHHHHcCCEEEEEcCCChH-------------------HHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHH
Confidence 5889999988889888764332110 111112222212233 1347999999999988876
Q ss_pred Hhc--CCCEEEEcCCCC
Q 028115 79 SKV--GVPFVMGTTGGD 93 (213)
Q Consensus 79 ~~~--g~~~ViGTTG~~ 93 (213)
.+. ++..|+-..|+.
T Consensus 76 ~~~~~~id~li~~ag~~ 92 (246)
T PRK12938 76 KAEVGEIDVLVNNAGIT 92 (246)
T ss_pred HHHhCCCCEEEECCCCC
Confidence 654 688999888863
No 123
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=70.70 E-value=35 Score=29.24 Aligned_cols=103 Identities=15% Similarity=0.177 Sum_probs=56.8
Q ss_pred ChHHHHHHHHhCCCeE--EEEecCCCccccccc-cccCceeEeecCCchhHHHhhhhcCCCCEEEEEcCChHHHHHHHHH
Q 028115 1 MGKAVIKAADAAGLEL--VPVSFGTEEESGQKV-EVCGKEIQVHGLSDRESVLASVFDKYPNMIVVDYTVPAAVNGNAEL 77 (213)
Q Consensus 1 MG~~i~~~~~~~~~el--v~~~~~~~~~~g~~~-~~~~~~v~i~~~~~~~~~l~~~~~~~~d~VvIDFS~p~~~~~~~~~ 77 (213)
||+.+++.+.+.+.++ +.+.++.++.. +.+ ...+ ++.+. .+.+++++ .+| +||=-+.|+.+.+.++.
T Consensus 11 mG~aia~~L~~~g~~~~~i~v~~r~~~~~-~~l~~~~~-~~~~~--~~~~~~~~-----~aD-vVilav~p~~~~~vl~~ 80 (258)
T PRK06476 11 ITEAMVTGLLTSPADVSEIIVSPRNAQIA-ARLAERFP-KVRIA--KDNQAVVD-----RSD-VVFLAVRPQIAEEVLRA 80 (258)
T ss_pred HHHHHHHHHHhCCCChheEEEECCCHHHH-HHHHHHcC-CceEe--CCHHHHHH-----hCC-EEEEEeCHHHHHHHHHH
Confidence 7899999887655432 33344433211 111 1000 23332 34444432 478 66666668888888765
Q ss_pred HH-hcCCCEEEEcCCCCHHHHHHHHHccCCcEEEccC
Q 028115 78 YS-KVGVPFVMGTTGGDRVRLHETIENSNVYAVISPQ 113 (213)
Q Consensus 78 ~~-~~g~~~ViGTTG~~~~~~~~~~~~~~~~~v~a~N 113 (213)
.. ..+.-+|.-..|.+.++++.+......++...||
T Consensus 81 l~~~~~~~vis~~ag~~~~~l~~~~~~~~~~~r~~P~ 117 (258)
T PRK06476 81 LRFRPGQTVISVIAATDRAALLEWIGHDVKLVRAIPL 117 (258)
T ss_pred hccCCCCEEEEECCCCCHHHHHHHhCCCCCEEEECCC
Confidence 42 2344566656667788888776543344455565
No 124
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=70.58 E-value=23 Score=31.34 Aligned_cols=83 Identities=12% Similarity=0.149 Sum_probs=52.4
Q ss_pred cCChHHHHHHHHHHHhcCCC-EEE---EcCCCCHH--------HHHHHHHccCCcEEEccChhHHHHHHHHHHHHHHHhc
Q 028115 65 YTVPAAVNGNAELYSKVGVP-FVM---GTTGGDRV--------RLHETIENSNVYAVISPQMGKQVVAFLAAMEIMAEQF 132 (213)
Q Consensus 65 FS~p~~~~~~~~~~~~~g~~-~Vi---GTTG~~~~--------~~~~~~~~~~~~~v~a~N~SlGv~ll~~l~~~aa~~l 132 (213)
|.+++.....+++..+.|.+ +++ ||++|... .+..+.+..+.||++-|--|.|..=+...+..||-.+
T Consensus 132 ~~t~~e~~~A~e~i~~~Gn~~i~L~eRg~~~Y~~~~~n~~dl~ai~~lk~~~~lPVivd~SHs~G~r~~v~~~a~AAvA~ 211 (250)
T PRK13397 132 MATIEEYLGALSYLQDTGKSNIILCERGVRGYDVETRNMLDIMAVPIIQQKTDLPIIVDVSHSTGRRDLLLPAAKIAKAV 211 (250)
T ss_pred CCCHHHHHHHHHHHHHcCCCeEEEEccccCCCCCccccccCHHHHHHHHHHhCCCeEECCCCCCcccchHHHHHHHHHHh
Confidence 77788888888888887764 333 77887521 2344565567888885558888633333334444444
Q ss_pred CCCCCCCcEEEEeccCCCCC
Q 028115 133 PGAFSGYSLQVLESHQAGKL 152 (213)
Q Consensus 133 ~~~~~~~dieI~E~HH~~K~ 152 (213)
+.|==++|.|.+-.+
T Consensus 212 -----GAdGl~IE~H~~P~~ 226 (250)
T PRK13397 212 -----GANGIMMEVHPDPDH 226 (250)
T ss_pred -----CCCEEEEEecCCccc
Confidence 335458999876544
No 125
>cd01019 ZnuA Zinc binding protein ZnuA. These proteins have been shown to function as initial receptors in the ABC uptake of Zn2+. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a single helix and bind their specific ligands in the cleft between these domains. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=70.53 E-value=28 Score=30.72 Aligned_cols=42 Identities=7% Similarity=-0.061 Sum_probs=22.2
Q ss_pred hHHHHHHHHHHHhcCCCEEEEcCCCCHHHHHHHHHccCCcEE
Q 028115 68 PAAVNGNAELYSKVGVPFVMGTTGGDRVRLHETIENSNVYAV 109 (213)
Q Consensus 68 p~~~~~~~~~~~~~g~~~ViGTTG~~~~~~~~~~~~~~~~~v 109 (213)
|..+.+.++.+.++++++|+.-...+..-.+.|+++.+++++
T Consensus 214 ~~~l~~l~~~ik~~~v~~If~e~~~~~~~~~~ia~~~g~~v~ 255 (286)
T cd01019 214 AKRLAKIRKEIKEKGATCVFAEPQFHPKIAETLAEGTGAKVG 255 (286)
T ss_pred HHHHHHHHHHHHHcCCcEEEecCCCChHHHHHHHHhcCceEE
Confidence 444555555555555555555555555555555555554443
No 126
>cd01537 PBP1_Repressors_Sugar_Binding_like Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems. Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems, all of which contain the type I periplasmic binding protein-like fold. Their specific ligands include lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor; in general the sugar binding domain in this family binds a sugar, which in turn changes the DNA binding activity of the repressor domain. The core structure of the periplasmic binding proteins is classified into two types and they differ in number and order of beta strands in each domain: type I, which has six beta strands, and type II, which has five beta strands. These two distinct structural arrangem
Probab=70.06 E-value=57 Score=26.35 Aligned_cols=39 Identities=21% Similarity=0.271 Sum_probs=24.6
Q ss_pred HhhhhcCCCCEEEEEcCChHHHHHHHHHHHhcCCCEEEEc
Q 028115 50 LASVFDKYPNMIVVDYTVPAAVNGNAELYSKVGVPFVMGT 89 (213)
Q Consensus 50 l~~~~~~~~d~VvIDFS~p~~~~~~~~~~~~~g~~~ViGT 89 (213)
+..+...++|.+|+-...+.... .++.+.+.++|+|..-
T Consensus 48 ~~~~~~~~~d~ii~~~~~~~~~~-~~~~l~~~~ip~v~~~ 86 (264)
T cd01537 48 LENLIARGVDGIIIAPSDLTAPT-IVKLARKAGIPVVLVD 86 (264)
T ss_pred HHHHHHcCCCEEEEecCCCcchh-HHHHhhhcCCCEEEec
Confidence 33344457884444444444444 7888899999998753
No 127
>cd06269 PBP1_glutamate_receptors_like Family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases such as the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domain of the ionotropic glutamate receptors. This CD represents the ligand-binding domain of the family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases such as the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domain of the ionotropic glutamate receptors, all of which are structurally similar and related to the periplasmic-binding fold type I family. The family C GPCRs consist of metabotropic glutamate receptor (mGluR) receptors, a calcium-sensing receptor (CaSR), gamma-aminobutyric receptors (GABAb), the promiscuous L-alpha-amino acid receptor GPR6A, families of taste and pheromone receptors, and orphan receptors. Truncated splicing va
Probab=69.16 E-value=12 Score=31.14 Aligned_cols=49 Identities=12% Similarity=0.004 Sum_probs=40.1
Q ss_pred chhHHHhhhhcCCCCEEEEEcCChHHHHHHHHHHHhcCC---CEEEEcCCCCH
Q 028115 45 DRESVLASVFDKYPNMIVVDYTVPAAVNGNAELYSKVGV---PFVMGTTGGDR 94 (213)
Q Consensus 45 ~~~~~l~~~~~~~~d~VvIDFS~p~~~~~~~~~~~~~g~---~~ViGTTG~~~ 94 (213)
+....+.++....++ |+|+|+.++.+...++.+.+.|+ -..+.++.|..
T Consensus 183 ~~~~~l~~l~~~~~~-viv~~~~~~~~~~~l~~a~~~g~~~~~~~i~~~~~~~ 234 (298)
T cd06269 183 DIRRLLKELKSSTAR-VIVVFSSEEDALRLLEEAVELGMMTGYHWIITDLWLT 234 (298)
T ss_pred HHHHHHHHHHhcCCc-EEEEEechHHHHHHHHHHHHcCCCCCeEEEEEChhhc
Confidence 456666777666778 89999999999999999999987 67888888754
No 128
>PLN02725 GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductase
Probab=68.82 E-value=24 Score=30.16 Aligned_cols=73 Identities=19% Similarity=0.308 Sum_probs=42.6
Q ss_pred ChHHHHHHHHhCCCeEEEEecCCCccccccccccCceeEeecCCchhHHHhhhhcCCCCEEEEEcCC-----------hH
Q 028115 1 MGKAVIKAADAAGLELVPVSFGTEEESGQKVEVCGKEIQVHGLSDRESVLASVFDKYPNMIVVDYTV-----------PA 69 (213)
Q Consensus 1 MG~~i~~~~~~~~~elv~~~~~~~~~~g~~~~~~~~~v~i~~~~~~~~~l~~~~~~~~d~VvIDFS~-----------p~ 69 (213)
.|+.+++.+.+.|.+++....... ..+....+++.+++ ...+| +||.|.. |.
T Consensus 9 iG~~l~~~L~~~g~~v~~~~~~~~-------------~Dl~~~~~l~~~~~---~~~~d-~Vih~A~~~~~~~~~~~~~~ 71 (306)
T PLN02725 9 VGSAIVRKLEALGFTNLVLRTHKE-------------LDLTRQADVEAFFA---KEKPT-YVILAAAKVGGIHANMTYPA 71 (306)
T ss_pred ccHHHHHHHHhCCCcEEEeecccc-------------CCCCCHHHHHHHHh---ccCCC-EEEEeeeeecccchhhhCcH
Confidence 489999999878877664432211 11221223344332 23578 8898842 22
Q ss_pred --------HHHHHHHHHHhcCCC-EEEEcC
Q 028115 70 --------AVNGNAELYSKVGVP-FVMGTT 90 (213)
Q Consensus 70 --------~~~~~~~~~~~~g~~-~ViGTT 90 (213)
.+...++.|.+++++ +|...|
T Consensus 72 ~~~~~n~~~~~~ll~~~~~~~~~~~i~~SS 101 (306)
T PLN02725 72 DFIRENLQIQTNVIDAAYRHGVKKLLFLGS 101 (306)
T ss_pred HHHHHHhHHHHHHHHHHHHcCCCeEEEeCc
Confidence 355678888888875 555444
No 129
>PRK06182 short chain dehydrogenase; Validated
Probab=68.74 E-value=39 Score=28.62 Aligned_cols=68 Identities=13% Similarity=0.136 Sum_probs=45.1
Q ss_pred ChHHHHHHHHhCCCeEEEEecCCCccccccccccCceeEeecCCchhHHHhhhhcCCCCEEEEEcCChHHHHHHHHHHHh
Q 028115 1 MGKAVIKAADAAGLELVPVSFGTEEESGQKVEVCGKEIQVHGLSDRESVLASVFDKYPNMIVVDYTVPAAVNGNAELYSK 80 (213)
Q Consensus 1 MG~~i~~~~~~~~~elv~~~~~~~~~~g~~~~~~~~~v~i~~~~~~~~~l~~~~~~~~d~VvIDFS~p~~~~~~~~~~~~ 80 (213)
+|+.+++.+.++|+++++. .+.. +.+ +++.......+..|.+.++.+...++.+.+
T Consensus 15 iG~~la~~l~~~G~~V~~~-~r~~-------------------~~l----~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~ 70 (273)
T PRK06182 15 IGKATARRLAAQGYTVYGA-ARRV-------------------DKM----EDLASLGVHPLSLDVTDEASIKAAVDTIIA 70 (273)
T ss_pred HHHHHHHHHHHCCCEEEEE-eCCH-------------------HHH----HHHHhCCCeEEEeeCCCHHHHHHHHHHHHH
Confidence 4888999888888888753 2221 011 111111234467899999999988887765
Q ss_pred c--CCCEEEEcCCC
Q 028115 81 V--GVPFVMGTTGG 92 (213)
Q Consensus 81 ~--g~~~ViGTTG~ 92 (213)
. ++.+||-..|+
T Consensus 71 ~~~~id~li~~ag~ 84 (273)
T PRK06182 71 EEGRIDVLVNNAGY 84 (273)
T ss_pred hcCCCCEEEECCCc
Confidence 4 68899988885
No 130
>cd06364 PBP1_CaSR Ligand-binding domain of the CaSR calcium-sensing receptor, which is a member of the family C receptors within the G-protein coupled receptor superfamily. Ligand-binding domain of the CaSR calcium-sensing receptor, which is a member of the family C receptors within the G-protein coupled receptor superfamily. CaSR provides feedback control of extracellular calcium homeostasis by responding sensitively to acute fluctuations in extracellular ionized Ca2+ concentration. This ligand-binding domain has homology to the bacterial leucine-isoleucine-valine binding protein (LIVBP) and a leucine binding protein (LBP). CaSR is widely expressed in mammalian tissues and is active in tissues that are not directly involved in extracellular calcium homeostasis. Moreover, CaSR responds to aromatic, aliphatic, and polar amino acids, but not to positively charged or branched chain amino acids, which suggests that changes in plasma amino acid levels are likely to modulate whole body calci
Probab=68.66 E-value=21 Score=34.17 Aligned_cols=50 Identities=4% Similarity=0.106 Sum_probs=38.4
Q ss_pred CchhHHHhhhhcCCCCEEEEEcCChHHHHHHHHHHHhcCC--CEEEEcCCCCH
Q 028115 44 SDRESVLASVFDKYPNMIVVDYTVPAAVNGNAELYSKVGV--PFVMGTTGGDR 94 (213)
Q Consensus 44 ~~~~~~l~~~~~~~~d~VvIDFS~p~~~~~~~~~~~~~g~--~~ViGTTG~~~ 94 (213)
.|+...+..+...++| |||=|+....+...++.+.+.|+ ++.||+.||..
T Consensus 231 ~d~~~~l~klk~~~a~-vVvl~~~~~~~~~ll~qa~~~g~~~~iwI~s~~w~~ 282 (510)
T cd06364 231 EEIQRVVEVIQNSTAK-VIVVFSSGPDLEPLIKEIVRRNITGKIWLASEAWAS 282 (510)
T ss_pred HHHHHHHHHHHhcCCe-EEEEEeCcHHHHHHHHHHHHhCCCCcEEEEEchhhc
Confidence 3555566666666788 77888888888999999999876 57789988863
No 131
>cd06308 PBP1_sensor_kinase_like Periplasmic binding domain of two-component sensor kinase signaling systems. Periplasmic binding domain of two-component sensor kinase signaling systems, some of which are fused with a C-terminal histidine kinase A domain (HisK) and/or a signal receiver domain (REC). Members of this group share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily and are predicted to be involved in sensing of environmental stimuli; their substrate specificities, however, are not known in detail.
Probab=68.52 E-value=66 Score=26.81 Aligned_cols=37 Identities=11% Similarity=0.240 Sum_probs=23.9
Q ss_pred hhcCCCCEEEEEcCChHHHHHHHHHHHhcCCCEEEEc
Q 028115 53 VFDKYPNMIVVDYTVPAAVNGNAELYSKVGVPFVMGT 89 (213)
Q Consensus 53 ~~~~~~d~VvIDFS~p~~~~~~~~~~~~~g~~~ViGT 89 (213)
+...++|.+++-=..++...+.++.+.+.|+|+|+--
T Consensus 52 ~~~~~vdgiii~~~~~~~~~~~~~~~~~~~ipvV~~~ 88 (270)
T cd06308 52 FIRQGVDLLIISPNEAAPLTPVVEEAYRAGIPVILLD 88 (270)
T ss_pred HHHhCCCEEEEecCchhhchHHHHHHHHCCCCEEEeC
Confidence 3345788444432244555677888889999988653
No 132
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=68.47 E-value=50 Score=28.39 Aligned_cols=107 Identities=12% Similarity=0.153 Sum_probs=60.6
Q ss_pred ChHHHHHHHHhCCCeEEEEecCCCc---cccccc-cc----cCce-eEeec-C--CchhHHHhhhhcCCCCEEEEEcCCh
Q 028115 1 MGKAVIKAADAAGLELVPVSFGTEE---ESGQKV-EV----CGKE-IQVHG-L--SDRESVLASVFDKYPNMIVVDYTVP 68 (213)
Q Consensus 1 MG~~i~~~~~~~~~elv~~~~~~~~---~~g~~~-~~----~~~~-v~i~~-~--~~~~~~l~~~~~~~~d~VvIDFS~p 68 (213)
.|+.+++.+.+.|+++++..|.... .-|-|+ .+ ...+ +.-+. . -+.++ +...++| |+|..+.+
T Consensus 42 VG~~~a~~L~~~g~~vv~v~D~~g~~~~~~Gld~~~l~~~~~~~g~l~~~~~~~~~~~~~----i~~~~~D-vlip~a~~ 116 (227)
T cd01076 42 VGSHAARFLHEAGAKVVAVSDSDGTIYNPDGLDVPALLAYKKEHGSVLGFPGAERITNEE----LLELDCD-ILIPAALE 116 (227)
T ss_pred HHHHHHHHHHHCCCEEEEEECCCCeEECCCCCCHHHHHHHHHhcCCcccCCCceecCCcc----ceeeccc-EEEecCcc
Confidence 3888999988899999998885221 112222 10 0000 00000 0 01122 2223578 89999988
Q ss_pred HHHHHHHHHHHhcCCCEEEEcCCC--CHHHHHHHHHccCCcEEEccChhHH
Q 028115 69 AAVNGNAELYSKVGVPFVMGTTGG--DRVRLHETIENSNVYAVISPQMGKQ 117 (213)
Q Consensus 69 ~~~~~~~~~~~~~g~~~ViGTTG~--~~~~~~~~~~~~~~~~v~a~N~SlG 117 (213)
..+... -+.+.+.++|+|-.-. +++.-+.|.+ ..+++.|-|...
T Consensus 117 ~~i~~~--~~~~l~a~~I~egAN~~~t~~a~~~L~~---rGi~~~PD~~aN 162 (227)
T cd01076 117 NQITAD--NADRIKAKIIVEAANGPTTPEADEILHE---RGVLVVPDILAN 162 (227)
T ss_pred CccCHH--HHhhceeeEEEeCCCCCCCHHHHHHHHH---CCCEEEChHHhc
Confidence 776443 3345679999987663 4444444443 478888887664
No 133
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=68.17 E-value=58 Score=25.77 Aligned_cols=67 Identities=10% Similarity=0.077 Sum_probs=40.1
Q ss_pred HhhhhcCCCCEEEEEcCCh---HHHHHHHHHHHhc---CCCEEEEcCCCC----HHHH-HHHHHccCCcEEEccChhHH
Q 028115 50 LASVFDKYPNMIVVDYTVP---AAVNGNAELYSKV---GVPFVMGTTGGD----RVRL-HETIENSNVYAVISPQMGKQ 117 (213)
Q Consensus 50 l~~~~~~~~d~VvIDFS~p---~~~~~~~~~~~~~---g~~~ViGTTG~~----~~~~-~~~~~~~~~~~v~a~N~SlG 117 (213)
++...+.+||.|.+=|+.. ..+.+.++.+.+. ++++++|=+-.. +++. +++. +.++-.++.|+..+-
T Consensus 47 ~~~a~~~~~d~V~lS~~~~~~~~~~~~~~~~L~~~~~~~~~i~vGG~~~~~~~~~~~~~~~l~-~~G~~~vf~~~~~~~ 124 (137)
T PRK02261 47 IDAAIETDADAILVSSLYGHGEIDCRGLREKCIEAGLGDILLYVGGNLVVGKHDFEEVEKKFK-EMGFDRVFPPGTDPE 124 (137)
T ss_pred HHHHHHcCCCEEEEcCccccCHHHHHHHHHHHHhcCCCCCeEEEECCCCCCccChHHHHHHHH-HcCCCEEECcCCCHH
Confidence 3333456899667766443 4566677777776 566777655432 2333 3343 345778999887664
No 134
>PF01297 TroA: Periplasmic solute binding protein family; InterPro: IPR006127 This is a family of ABC transporter metal-binding lipoproteins. An example is the periplasmic zinc-binding protein TroA P96116 from SWISSPROT that interacts with an ATP-binding cassette transport system in Treponema pallidum and plays a role in the transport of zinc across the cytoplasmic membrane. Related proteins are found in both Gram-positive and Gram-negative bacteria. ; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2PS9_A 2PS0_A 2OSV_A 2OGW_A 2PS3_A 2PRS_B 3MFQ_C 3GI1_B 2OV3_A 1PQ4_A ....
Probab=68.15 E-value=15 Score=31.49 Aligned_cols=48 Identities=10% Similarity=0.045 Sum_probs=35.2
Q ss_pred ChHHHHHHHHHHHhcCCCEEEEcCCCCHHHHHHHHHccCCcEEEccCh
Q 028115 67 VPAAVNGNAELYSKVGVPFVMGTTGGDRVRLHETIENSNVYAVISPQM 114 (213)
Q Consensus 67 ~p~~~~~~~~~~~~~g~~~ViGTTG~~~~~~~~~~~~~~~~~v~a~N~ 114 (213)
+|..+.+..+.+.++++++|+...+.+..-.+.++++.+++++...++
T Consensus 184 s~~~l~~l~~~ik~~~v~~i~~e~~~~~~~~~~la~~~g~~vv~ld~l 231 (256)
T PF01297_consen 184 SPKDLAELIKLIKENKVKCIFTEPQFSSKLAEALAKETGVKVVYLDPL 231 (256)
T ss_dssp -HHHHHHHHHHHHHTT-SEEEEETTS-THHHHHHHHCCT-EEEESSTT
T ss_pred CHHHHHHHHHHhhhcCCcEEEecCCCChHHHHHHHHHcCCcEEEeCCC
Confidence 467788888888888888888888887777777877777888877777
No 135
>PRK04165 acetyl-CoA decarbonylase/synthase complex subunit gamma; Provisional
Probab=68.08 E-value=28 Score=33.39 Aligned_cols=65 Identities=14% Similarity=0.181 Sum_probs=32.6
Q ss_pred EEEEcCChHHHHHHHHHHHhcCCCEEEEcCCCCHHHHHHHHHccCCcEEEccChhHHHHHHHHHHHHHH
Q 028115 61 IVVDYTVPAAVNGNAELYSKVGVPFVMGTTGGDRVRLHETIENSNVYAVISPQMGKQVVAFLAAMEIMA 129 (213)
Q Consensus 61 VvIDFS~p~~~~~~~~~~~~~g~~~ViGTTG~~~~~~~~~~~~~~~~~v~a~N~SlGv~ll~~l~~~aa 129 (213)
+.||-..|+.+..-++.+. .++|+|.+.|.=+.+++..++...+.|+++.++= ++.+.++++.+.
T Consensus 158 LSIDT~dpevleaAleaga-d~~plI~Sat~dN~~~m~~la~~yg~pvVv~~~d---l~~L~~lv~~~~ 222 (450)
T PRK04165 158 LILCSEDPAVLKAALEVVA-DRKPLLYAATKENYEEMAELAKEYNCPLVVKAPN---LEELKELVEKLQ 222 (450)
T ss_pred EEEeCCCHHHHHHHHHhcC-CCCceEEecCcchHHHHHHHHHHcCCcEEEEchh---HHHHHHHHHHHH
Confidence 5666666666555554432 2455666655322344444455555565543331 444555544443
No 136
>cd06338 PBP1_ABC_ligand_binding_like_5 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT); however their ligand specificity has not been determined experimentally.
Probab=68.03 E-value=82 Score=27.42 Aligned_cols=51 Identities=14% Similarity=0.010 Sum_probs=37.4
Q ss_pred CchhHHHhhhhcCCCCEEEEEcCChHHHHHHHHHHHhcCC--CEEEEcCCCCHH
Q 028115 44 SDRESVLASVFDKYPNMIVVDYTVPAAVNGNAELYSKVGV--PFVMGTTGGDRV 95 (213)
Q Consensus 44 ~~~~~~l~~~~~~~~d~VvIDFS~p~~~~~~~~~~~~~g~--~~ViGTTG~~~~ 95 (213)
.|+...+.++...++| +||-...+..+...++.+.+.|+ +++.++.|+..+
T Consensus 183 ~d~~~~v~~l~~~~~d-~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 235 (345)
T cd06338 183 ADLSPLISKAKAAGPD-AVVVAGHFPDAVLLVRQMKELGYNPKALYMTVGPAFP 235 (345)
T ss_pred cchHHHHHHHHhcCCC-EEEECCcchhHHHHHHHHHHcCCCCCEEEEecCCCcH
Confidence 4667777777777899 67777777788889999998875 456566666543
No 137
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=67.77 E-value=36 Score=29.97 Aligned_cols=79 Identities=11% Similarity=0.053 Sum_probs=46.2
Q ss_pred ChHHHHHHHHHHHhcCC-CEEE---EcCCC-C-------HHHHHHHHHccCCcEEEccChhHHHHHHHHHHHHHHHhcCC
Q 028115 67 VPAAVNGNAELYSKVGV-PFVM---GTTGG-D-------RVRLHETIENSNVYAVISPQMGKQVVAFLAAMEIMAEQFPG 134 (213)
Q Consensus 67 ~p~~~~~~~~~~~~~g~-~~Vi---GTTG~-~-------~~~~~~~~~~~~~~~v~a~N~SlGv~ll~~l~~~aa~~l~~ 134 (213)
+++.....++++.+.|. .+++ ||+.| . ...+..+++..+.||.+=|--|.|.--+...+..+|-.+
T Consensus 144 t~~e~~~Ave~i~~~Gn~~i~l~~rG~s~y~~~~~~~~dl~~i~~lk~~~~~pV~~ds~Hs~G~r~~~~~~~~aAva~-- 221 (260)
T TIGR01361 144 TIEEWLYAAEYILSSGNGNVILCERGIRTFEKATRNTLDLSAVPVLKKETHLPIIVDPSHAAGRRDLVIPLAKAAIAA-- 221 (260)
T ss_pred CHHHHHHHHHHHHHcCCCcEEEEECCCCCCCCCCcCCcCHHHHHHHHHhhCCCEEEcCCCCCCccchHHHHHHHHHHc--
Confidence 56667777778777776 3555 67666 2 123455566567888885556666222222233344444
Q ss_pred CCCCCcEEEEeccCCC
Q 028115 135 AFSGYSLQVLESHQAG 150 (213)
Q Consensus 135 ~~~~~dieI~E~HH~~ 150 (213)
+.|--++|.|-.-
T Consensus 222 ---Ga~gl~iE~H~t~ 234 (260)
T TIGR01361 222 ---GADGLMIEVHPDP 234 (260)
T ss_pred ---CCCEEEEEeCCCc
Confidence 3466688888653
No 138
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=67.35 E-value=65 Score=28.56 Aligned_cols=86 Identities=12% Similarity=0.146 Sum_probs=50.0
Q ss_pred ChHHHHHHHHhCCCeEEEEecCCCcc---ccc---ccc-ccCc----eeEeecCCchhHHHhhhhcCCCCEEEEEcCChH
Q 028115 1 MGKAVIKAADAAGLELVPVSFGTEEE---SGQ---KVE-VCGK----EIQVHGLSDRESVLASVFDKYPNMIVVDYTVPA 69 (213)
Q Consensus 1 MG~~i~~~~~~~~~elv~~~~~~~~~---~g~---~~~-~~~~----~v~i~~~~~~~~~l~~~~~~~~d~VvIDFS~p~ 69 (213)
||..++..+.+.|.++. .+.+.++. +.+ ... +.+. .+.+ ..++++.+. ..+| ++|=++.+.
T Consensus 11 ~G~ala~~L~~~g~~V~-l~~r~~~~~~~i~~~~~~~~~~~~~~~~~~i~~--~~~~~~~~~----~~~D-liiiavks~ 82 (326)
T PRK14620 11 FGTAIAIALSSKKISVN-LWGRNHTTFESINTKRKNLKYLPTCHLPDNISV--KSAIDEVLS----DNAT-CIILAVPTQ 82 (326)
T ss_pred HHHHHHHHHHHCCCeEE-EEecCHHHHHHHHHcCCCcccCCCCcCCCCeEE--eCCHHHHHh----CCCC-EEEEEeCHH
Confidence 78999988887777765 44443211 000 010 1111 1222 234444321 2568 788888888
Q ss_pred HHHHHHHHHHh----cCCCEEEEcCCCCH
Q 028115 70 AVNGNAELYSK----VGVPFVMGTTGGDR 94 (213)
Q Consensus 70 ~~~~~~~~~~~----~g~~~ViGTTG~~~ 94 (213)
.+.+.++.... .+.++|+.+-|+..
T Consensus 83 ~~~~~l~~l~~~~l~~~~~vv~~~nGi~~ 111 (326)
T PRK14620 83 QLRTICQQLQDCHLKKNTPILICSKGIEK 111 (326)
T ss_pred HHHHHHHHHHHhcCCCCCEEEEEEcCeeC
Confidence 78887776654 35678999999854
No 139
>cd06313 PBP1_ABC_sugar_binding_like_5 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=66.39 E-value=72 Score=26.90 Aligned_cols=39 Identities=13% Similarity=0.099 Sum_probs=27.2
Q ss_pred HhhhhcCCCCEEEEEcCChHHHHHHHHHHHhcCCCEEEE
Q 028115 50 LASVFDKYPNMIVVDYTVPAAVNGNAELYSKVGVPFVMG 88 (213)
Q Consensus 50 l~~~~~~~~d~VvIDFS~p~~~~~~~~~~~~~g~~~ViG 88 (213)
+..+...++|.++|.-..+....+.++.+.+.++|+|+=
T Consensus 48 i~~~~~~~vdgiii~~~~~~~~~~~i~~~~~~~iPvV~~ 86 (272)
T cd06313 48 IENMASQGWDFIAVDPLGIGTLTEAVQKAIARGIPVIDM 86 (272)
T ss_pred HHHHHHcCCCEEEEcCCChHHhHHHHHHHHHCCCcEEEe
Confidence 334444578866664345666778889999999998873
No 140
>cd06331 PBP1_AmiC_like Type I periplasmic components of amide-binding protein (AmiC) and the active transport system for short-chain and urea (FmdDEF). This group includes the type I periplasmic components of amide-binding protein (AmiC) and the active transport system for short-chain and urea (FmdDEF), found in bacteria and Archaea. AmiC controls expression of the amidase operon by a ligand-triggered conformational switch. In the absence of ligand or presence of butyramide (repressor), AmiC (the ligand sensor and negative regulator) adopts an open conformation and inhibits the transcription antitermination function of AmiR by direct protein-protein interaction. In the presence of inducing ligands such as acetamide, AmiC adopts a closed conformation which disrupts a silencing AmiC-AmiR complex and the expression of amidase and other genes of the operon is induced. FmdDEF is predicted to be an ATP-dependent transporter and closely resembles the periplasmic binding protein and the two t
Probab=66.27 E-value=37 Score=29.67 Aligned_cols=57 Identities=18% Similarity=0.144 Sum_probs=39.2
Q ss_pred CCchhHHHhhhhcCCCCEEEEEcCChHHHHHHHHHHHhcCCC---EEEEcCCCCHHHHHHH
Q 028115 43 LSDRESVLASVFDKYPNMIVVDYTVPAAVNGNAELYSKVGVP---FVMGTTGGDRVRLHET 100 (213)
Q Consensus 43 ~~~~~~~l~~~~~~~~d~VvIDFS~p~~~~~~~~~~~~~g~~---~ViGTTG~~~~~~~~~ 100 (213)
..|+...+.++...+|| +|+-+..+......++.+.+.|.. +.+.+.++....+..+
T Consensus 173 ~~d~~~~v~~~~~~~~d-~v~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 232 (333)
T cd06331 173 TSDFGSVIEKIKAAGPD-VVLSTLVGDSNVAFYRQFAAAGLDADRIPILSLTLDENELAAI 232 (333)
T ss_pred cccHHHHHHHHHHcCCC-EEEEecCCCChHHHHHHHHHcCCCcCCCeeEEcccchhhhhcc
Confidence 35777777777777899 566666666667899999999885 5555555555445444
No 141
>cd01539 PBP1_GGBP Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. GGBP is a member of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic GGBP is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=65.82 E-value=75 Score=27.44 Aligned_cols=38 Identities=13% Similarity=0.295 Sum_probs=28.9
Q ss_pred HhhhhcCCCCEEEEEcCChHHHHHHHHHHHhcCCCEEE
Q 028115 50 LASVFDKYPNMIVVDYTVPAAVNGNAELYSKVGVPFVM 87 (213)
Q Consensus 50 l~~~~~~~~d~VvIDFS~p~~~~~~~~~~~~~g~~~Vi 87 (213)
+..+....+|.++|.-+.++.+.+.++.+.+.|+|+|+
T Consensus 50 i~~l~~~~vdgiii~~~~~~~~~~~~~~~~~~giPvV~ 87 (303)
T cd01539 50 IDTALAKGVDLLAVNLVDPTAAQTVINKAKQKNIPVIF 87 (303)
T ss_pred HHHHHHcCCCEEEEecCchhhHHHHHHHHHHCCCCEEE
Confidence 44444557886677666777788899999999999987
No 142
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=65.74 E-value=32 Score=27.50 Aligned_cols=66 Identities=15% Similarity=0.136 Sum_probs=36.0
Q ss_pred ChHHHHHHHHhCCCeEEEEecCCCccccccccccCceeEeecCCchhHHHhhhhcCCCCEEEEEcCChHHHHHHHHH
Q 028115 1 MGKAVIKAADAAGLELVPVSFGTEEESGQKVEVCGKEIQVHGLSDRESVLASVFDKYPNMIVVDYTVPAAVNGNAEL 77 (213)
Q Consensus 1 MG~~i~~~~~~~~~elv~~~~~~~~~~g~~~~~~~~~v~i~~~~~~~~~l~~~~~~~~d~VvIDFS~p~~~~~~~~~ 77 (213)
||+.+++.+...|++|.. .++.++...+ +...++... +++.++.+ .+|+|++=-+.++++.+.+..
T Consensus 12 mG~~~a~~L~~~g~~v~~-~d~~~~~~~~---~~~~g~~~~--~s~~e~~~-----~~dvvi~~v~~~~~v~~v~~~ 77 (163)
T PF03446_consen 12 MGSAMARNLAKAGYEVTV-YDRSPEKAEA---LAEAGAEVA--DSPAEAAE-----QADVVILCVPDDDAVEAVLFG 77 (163)
T ss_dssp HHHHHHHHHHHTTTEEEE-EESSHHHHHH---HHHTTEEEE--SSHHHHHH-----HBSEEEE-SSSHHHHHHHHHC
T ss_pred HHHHHHHHHHhcCCeEEe-eccchhhhhh---hHHhhhhhh--hhhhhHhh-----cccceEeecccchhhhhhhhh
Confidence 899999999999999874 5655421111 111122222 35555443 246344444555666666554
No 143
>PRK08223 hypothetical protein; Validated
Probab=65.73 E-value=16 Score=33.00 Aligned_cols=33 Identities=15% Similarity=0.017 Sum_probs=27.0
Q ss_pred CCCEEEEEcCCh---HHHHHHHHHHHhcCCCEEEEcC
Q 028115 57 YPNMIVVDYTVP---AAVNGNAELYSKVGVPFVMGTT 90 (213)
Q Consensus 57 ~~d~VvIDFS~p---~~~~~~~~~~~~~g~~~ViGTT 90 (213)
.+| +|||-+.. +.-+..-++|.++++|+|.|.+
T Consensus 117 ~~D-lVvD~~D~~~~~~r~~ln~~c~~~~iP~V~~~~ 152 (287)
T PRK08223 117 GVD-VYVDGLDFFEFDARRLVFAACQQRGIPALTAAP 152 (287)
T ss_pred CCC-EEEECCCCCcHHHHHHHHHHHHHcCCCEEEEec
Confidence 578 88998864 6677788899999999999843
No 144
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=65.58 E-value=38 Score=28.55 Aligned_cols=72 Identities=7% Similarity=0.100 Sum_probs=46.0
Q ss_pred ChHHHHHHHHhCCCeEEEEecCCCccccccccccCceeEeecCCchhHHHhhhhcCCCCEEEEEcCChHHHHHHHHHHHh
Q 028115 1 MGKAVIKAADAAGLELVPVSFGTEEESGQKVEVCGKEIQVHGLSDRESVLASVFDKYPNMIVVDYTVPAAVNGNAELYSK 80 (213)
Q Consensus 1 MG~~i~~~~~~~~~elv~~~~~~~~~~g~~~~~~~~~v~i~~~~~~~~~l~~~~~~~~d~VvIDFS~p~~~~~~~~~~~~ 80 (213)
+|+++++.+.++|..|+.. .+.. ..++.++++.......+-.|+|.++.+.+.++.+.+
T Consensus 21 IG~a~a~~la~~G~~Vi~~-~r~~--------------------~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~ 79 (252)
T PRK06079 21 IAWGCAQAIKDQGATVIYT-YQND--------------------RMKKSLQKLVDEEDLLVECDVASDESIERAFATIKE 79 (252)
T ss_pred hHHHHHHHHHHCCCEEEEe-cCch--------------------HHHHHHHhhccCceeEEeCCCCCHHHHHHHHHHHHH
Confidence 5889999888889887743 2211 111112222111222356899999999999998876
Q ss_pred c--CCCEEEEcCCCC
Q 028115 81 V--GVPFVMGTTGGD 93 (213)
Q Consensus 81 ~--g~~~ViGTTG~~ 93 (213)
. ++.++|-..|+.
T Consensus 80 ~~g~iD~lv~nAg~~ 94 (252)
T PRK06079 80 RVGKIDGIVHAIAYA 94 (252)
T ss_pred HhCCCCEEEEccccc
Confidence 3 478888777753
No 145
>cd06324 PBP1_ABC_sugar_binding_like_13 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=65.39 E-value=74 Score=27.45 Aligned_cols=36 Identities=11% Similarity=0.253 Sum_probs=24.2
Q ss_pred hhhcC--CCCEEEEEcCChHHHHHHHHHHHhcCCCEEEE
Q 028115 52 SVFDK--YPNMIVVDYTVPAAVNGNAELYSKVGVPFVMG 88 (213)
Q Consensus 52 ~~~~~--~~d~VvIDFS~p~~~~~~~~~~~~~g~~~ViG 88 (213)
.+... .+|.++| ++......+.++.+.+.|+|+|+-
T Consensus 51 ~~~~~~~~vdgiIi-~~~~~~~~~~~~~~~~~giPvV~~ 88 (305)
T cd06324 51 TILQRPDKPDALIF-TNEKSVAPELLRLAEGAGVKLFLV 88 (305)
T ss_pred HHHHhccCCCEEEE-cCCccchHHHHHHHHhCCCeEEEE
Confidence 33345 7885455 544334567788999999998854
No 146
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=65.29 E-value=73 Score=29.31 Aligned_cols=121 Identities=11% Similarity=0.081 Sum_probs=61.1
Q ss_pred ChHHHHHHHHhCCCeEEEEecCCCccccccc-cccCceeEeecCCchhHHHhhhhcCCCCEEEEEcCChHHHHHHHHHHH
Q 028115 1 MGKAVIKAADAAGLELVPVSFGTEEESGQKV-EVCGKEIQVHGLSDRESVLASVFDKYPNMIVVDYTVPAAVNGNAELYS 79 (213)
Q Consensus 1 MG~~i~~~~~~~~~elv~~~~~~~~~~g~~~-~~~~~~v~i~~~~~~~~~l~~~~~~~~d~VvIDFS~p~~~~~~~~~~~ 79 (213)
+|+.+++.+.+.|++++. ++..+...- .+ .-.+..+..-+..+.+ .+.+....++|.|++-....+.-......+.
T Consensus 11 ig~~~a~~L~~~g~~v~v-id~~~~~~~-~~~~~~~~~~~~gd~~~~~-~l~~~~~~~a~~vi~~~~~~~~n~~~~~~~r 87 (453)
T PRK09496 11 VGYTLAENLSGENNDVTV-IDTDEERLR-RLQDRLDVRTVVGNGSSPD-VLREAGAEDADLLIAVTDSDETNMVACQIAK 87 (453)
T ss_pred HHHHHHHHHHhCCCcEEE-EECCHHHHH-HHHhhcCEEEEEeCCCCHH-HHHHcCCCcCCEEEEecCChHHHHHHHHHHH
Confidence 588999988888888874 554332111 01 0011111111112222 2333323457744444444444333445555
Q ss_pred hc-CCCEEEEcCCCCHH-HHHHHH--HccCCcEEEccChhHHHHHHHHH
Q 028115 80 KV-GVPFVMGTTGGDRV-RLHETI--ENSNVYAVISPQMGKQVVAFLAA 124 (213)
Q Consensus 80 ~~-g~~~ViGTTG~~~~-~~~~~~--~~~~~~~v~a~N~SlGv~ll~~l 124 (213)
+. +.+-++..+--.+. +..++. +..++-.+++|..-.+-.+...+
T Consensus 88 ~~~~~~~ii~~~~~~~~~~~~~l~~~~~~G~~~vi~p~~~~a~~l~~~l 136 (453)
T PRK09496 88 SLFGAPTTIARVRNPEYAEYDKLFSKEALGIDLLISPELLVAREIARLI 136 (453)
T ss_pred HhcCCCeEEEEECCccccchhhhhhhhcCCccEEECHHHHHHHHHHHHh
Confidence 64 66666665432221 234443 44567789999988776665543
No 147
>cd06363 PBP1_Taste_receptor Ligand-binding domain of the T1R taste receptor. Ligand-binding domain of the T1R taste receptor. The T1R is a member of the family C receptors within the G-protein coupled receptor superfamily, which also includes the metabotropic glutamate receptors, GABAb receptors, the calcium-sensing receptor (CaSR), the V2R pheromone receptors, and a small group of uncharacterized orphan receptors.
Probab=65.27 E-value=31 Score=31.49 Aligned_cols=50 Identities=8% Similarity=0.102 Sum_probs=39.3
Q ss_pred CchhHHHhhhhcCCCCEEEEEcCChHHHHHHHHHHHhcCC--CEEEEcCCCCH
Q 028115 44 SDRESVLASVFDKYPNMIVVDYTVPAAVNGNAELYSKVGV--PFVMGTTGGDR 94 (213)
Q Consensus 44 ~~~~~~l~~~~~~~~d~VvIDFS~p~~~~~~~~~~~~~g~--~~ViGTTG~~~ 94 (213)
.|+...+.++...+|| +||=++.++.....++.+.+.|+ ++.+||.||..
T Consensus 221 ~d~~~~l~~i~~~~~d-vIil~~~~~~~~~il~qa~~~g~~~~~~i~~~~~~~ 272 (410)
T cd06363 221 TDYQQILKQINQTKVN-VIVVFASRQPAEAFFNSVIQQNLTGKVWIASEAWSL 272 (410)
T ss_pred HHHHHHHHHHhcCCCe-EEEEEcChHHHHHHHHHHHhcCCCCCEEEEeCcccc
Confidence 4677778888777889 66777777778899999999887 36689989864
No 148
>PF07075 DUF1343: Protein of unknown function (DUF1343); InterPro: IPR008302 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=64.89 E-value=16 Score=34.02 Aligned_cols=145 Identities=18% Similarity=0.141 Sum_probs=79.6
Q ss_pred HHHHHHHH-hCCCeEEEEecCCCccc-----cccc--cccC-ceeEe---ecCCchhHHHhhhhcCCCCEEEEE------
Q 028115 3 KAVIKAAD-AAGLELVPVSFGTEEES-----GQKV--EVCG-KEIQV---HGLSDRESVLASVFDKYPNMIVVD------ 64 (213)
Q Consensus 3 ~~i~~~~~-~~~~elv~~~~~~~~~~-----g~~~--~~~~-~~v~i---~~~~~~~~~l~~~~~~~~d~VvID------ 64 (213)
+.+++.+. .++.+|++.+.+..+.- |+.+ .+.. .|+++ ++.. ..-.-+.+ ...|++|+|
T Consensus 15 ~~~~d~L~~~~~v~l~alF~PEHG~~G~~~ag~~v~~~~D~~tglpVySLYG~~-~~Pt~~mL--~~vDvlvfDiQDvG~ 91 (365)
T PF07075_consen 15 RHTIDVLAAAPGVNLVALFGPEHGFRGDAQAGEKVEDYIDPRTGLPVYSLYGKT-RKPTPEML--KGVDVLVFDIQDVGV 91 (365)
T ss_pred cCHHHHHhhCCCCCEEEEecCCCCCccchhcCCcCCCCcCCCCCCeEEECCCCC-CCCCHHHH--hCCCEEEEeCccCCc
Confidence 44566666 56899998887544332 3222 1111 14444 3322 11111112 267878888
Q ss_pred --cCChHHHHHHHHHHHhcCCCEEEEc-----CCCCH------HHHHHHHHccCCcEEEccChhHHHHHHHHHHHHHHHh
Q 028115 65 --YTVPAAVNGNAELYSKVGVPFVMGT-----TGGDR------VRLHETIENSNVYAVISPQMGKQVVAFLAAMEIMAEQ 131 (213)
Q Consensus 65 --FS~p~~~~~~~~~~~~~g~~~ViGT-----TG~~~------~~~~~~~~~~~~~~v~a~N~SlGv~ll~~l~~~aa~~ 131 (213)
||--..+...++.|.++|+++||== .|... .+.+.+.-...+|+. -=|.+| ++++...+.
T Consensus 92 R~YTYi~Tl~~~MeAaa~~g~~vvVLDRPNPl~G~~veGp~l~~~~~SFvG~~~iP~r--HGmTiG-----ELA~~~n~e 164 (365)
T PF07075_consen 92 RFYTYISTLYYVMEAAAENGKPVVVLDRPNPLGGRYVEGPILDPEFRSFVGMYPIPIR--HGMTIG-----ELARMFNGE 164 (365)
T ss_pred hHHHHHHHHHHHHHHHHHhCCeEEEEeCCCCCCCCccccCCcCcccccccCCCccccc--cCCCHH-----HHHHHHHhh
Confidence 7888999999999999999999831 22221 122222222234444 446776 455555444
Q ss_pred cCCCC-CCCcEEEEeccCCCCCCc-hHHHH
Q 028115 132 FPGAF-SGYSLQVLESHQAGKLDT-SGTAK 159 (213)
Q Consensus 132 l~~~~-~~~dieI~E~HH~~K~Da-SGTA~ 159 (213)
.. . ...|.+||.+..-+.... .-|.+
T Consensus 165 ~~--~~~~~~L~VI~m~gw~R~m~~~~Tgl 192 (365)
T PF07075_consen 165 FW--LSGKCDLTVIPMEGWRRSMWFDDTGL 192 (365)
T ss_pred cC--CCCCCceEEEeCCCCCCCCCchhcCC
Confidence 42 1 237999999865333222 44444
No 149
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=64.83 E-value=36 Score=25.74 Aligned_cols=71 Identities=21% Similarity=0.127 Sum_probs=47.3
Q ss_pred CCC--EEEEEcCChHHHHHHHHHHHhcCCCEEEEcCCCCHH-------HHHHHHHccCCcE-EEccChhHHHHHHHHHHH
Q 028115 57 YPN--MIVVDYTVPAAVNGNAELYSKVGVPFVMGTTGGDRV-------RLHETIENSNVYA-VISPQMGKQVVAFLAAME 126 (213)
Q Consensus 57 ~~d--~VvIDFS~p~~~~~~~~~~~~~g~~~ViGTTG~~~~-------~~~~~~~~~~~~~-v~a~N~SlGv~ll~~l~~ 126 (213)
.+| ..++|.+.++.....+..+.+.++|+++--|-++.. +.+.+.+.-+.++ .+|+....|+..+++.+.
T Consensus 74 ~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~iSa~~~~~~~~l~~~l~ 153 (158)
T cd01879 74 KPDLIVNVVDATNLERNLYLTLQLLELGLPVVVALNMIDEAEKRGIKIDLDKLSELLGVPVVPTSARKGEGIDELKDAIA 153 (158)
T ss_pred CCcEEEEEeeCCcchhHHHHHHHHHHcCCCEEEEEehhhhcccccchhhHHHHHHhhCCCeEEEEccCCCCHHHHHHHHH
Confidence 566 368899999887777777888999999999988731 2334444445554 456655566665555444
Q ss_pred H
Q 028115 127 I 127 (213)
Q Consensus 127 ~ 127 (213)
.
T Consensus 154 ~ 154 (158)
T cd01879 154 E 154 (158)
T ss_pred H
Confidence 3
No 150
>PRK06139 short chain dehydrogenase; Provisional
Probab=64.80 E-value=39 Score=30.31 Aligned_cols=72 Identities=18% Similarity=0.141 Sum_probs=47.0
Q ss_pred ChHHHHHHHHhCCCeEEEEecCCCccccccccccCceeEeecCCchhHHHhhhhcCCCC--EEEEEcCChHHHHHHHHHH
Q 028115 1 MGKAVIKAADAAGLELVPVSFGTEEESGQKVEVCGKEIQVHGLSDRESVLASVFDKYPN--MIVVDYTVPAAVNGNAELY 78 (213)
Q Consensus 1 MG~~i~~~~~~~~~elv~~~~~~~~~~g~~~~~~~~~v~i~~~~~~~~~l~~~~~~~~d--~VvIDFS~p~~~~~~~~~~ 78 (213)
+|+.+++.+.+.|..|+.. .+.. +.+++..+++.....+ .+..|.|.++.+...++.+
T Consensus 19 IG~aia~~la~~G~~Vvl~-~R~~-------------------~~l~~~~~~~~~~g~~~~~~~~Dv~d~~~v~~~~~~~ 78 (330)
T PRK06139 19 IGQATAEAFARRGARLVLA-ARDE-------------------EALQAVAEECRALGAEVLVVPTDVTDADQVKALATQA 78 (330)
T ss_pred HHHHHHHHHHHCCCEEEEE-ECCH-------------------HHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHH
Confidence 4889999888888887743 3322 1222222222222233 2467999999999998887
Q ss_pred Hhc--CCCEEEEcCCC
Q 028115 79 SKV--GVPFVMGTTGG 92 (213)
Q Consensus 79 ~~~--g~~~ViGTTG~ 92 (213)
.+. ++.++|-..|.
T Consensus 79 ~~~~g~iD~lVnnAG~ 94 (330)
T PRK06139 79 ASFGGRIDVWVNNVGV 94 (330)
T ss_pred HHhcCCCCEEEECCCc
Confidence 765 57889888884
No 151
>TIGR03787 marine_sort_RR proteobacterial dedicated sortase system response regulator. This model describes a family of DNA-binding response regulator proteins, associated with an adjacent histidine kinase (TIGR03785) to form a two-component system. This system co-occurs with, and often is adjacent to, a proteobacterial variant form of the protein sorting transpeptidase called sortase (TIGR03784), and a single target protein for the sortase. We give this protein the gene symbol pdsR, for Proteobacterial Dedicated Sortase system Response regulator.
Probab=64.79 E-value=60 Score=26.08 Aligned_cols=68 Identities=9% Similarity=0.144 Sum_probs=37.2
Q ss_pred hHHHhhhhcCCCCEEEEEcCChH---HHHHHHHHHHhc--CCCEEEEcCCCCH-HHHHHHHHccCCcEEEccChhH
Q 028115 47 ESVLASVFDKYPNMIVVDYTVPA---AVNGNAELYSKV--GVPFVMGTTGGDR-VRLHETIENSNVYAVISPQMGK 116 (213)
Q Consensus 47 ~~~l~~~~~~~~d~VvIDFS~p~---~~~~~~~~~~~~--g~~~ViGTTG~~~-~~~~~~~~~~~~~~v~a~N~Sl 116 (213)
++++..+....||.|++|...|. .-.+.++...+. .+|+|+-| +... +...... ..+..-++.-.++.
T Consensus 34 ~~~~~~~~~~~~dlvild~~l~~~~~~g~~~~~~i~~~~~~~pii~ls-~~~~~~~~~~~~-~~Ga~~~l~kp~~~ 107 (227)
T TIGR03787 34 PSAMQAFRQRLPDLAIIDIGLGEEIDGGFMLCQDLRSLSATLPIIFLT-ARDSDFDTVSGL-RLGADDYLTKDISL 107 (227)
T ss_pred HHHHHHHHhCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCCCCEEEEE-CCCCHHHHHHHH-hcCCCEEEECCCCH
Confidence 33444444456898899998885 345566655543 57888765 4443 3322222 34433344444443
No 152
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=64.58 E-value=29 Score=33.16 Aligned_cols=104 Identities=11% Similarity=0.045 Sum_probs=56.4
Q ss_pred ChHHHHHHHHhCCCeEEEEecCCCccccc---cc-----cc--------cCce-eEeecCCchhHHHhhhhcCCCCEEEE
Q 028115 1 MGKAVIKAADAAGLELVPVSFGTEEESGQ---KV-----EV--------CGKE-IQVHGLSDRESVLASVFDKYPNMIVV 63 (213)
Q Consensus 1 MG~~i~~~~~~~~~elv~~~~~~~~~~g~---~~-----~~--------~~~~-v~i~~~~~~~~~l~~~~~~~~d~VvI 63 (213)
||+.++..+...|++|. ..+..+..... .+ .. ...+ +.+ .+++++++ .++| +||
T Consensus 15 MG~~iA~~la~~G~~V~-v~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~~--~~~~~ea~-----~~aD-~Vi 85 (495)
T PRK07531 15 IGGGWAARFLLAGIDVA-VFDPHPEAERIIGEVLANAERAYAMLTDAPLPPEGRLTF--CASLAEAV-----AGAD-WIQ 85 (495)
T ss_pred HHHHHHHHHHhCCCeEE-EEeCCHHHHHHHHHHHHHHHHHHhhhccchhhhhhceEe--eCCHHHHh-----cCCC-EEE
Confidence 89999998888899876 35654322110 00 00 0001 222 24555544 3578 677
Q ss_pred EcCChHH-HHH----HHHHHHhcCCCEEEEcCCCCHHHHHHHHHccCCcEEEccC
Q 028115 64 DYTVPAA-VNG----NAELYSKVGVPFVMGTTGGDRVRLHETIENSNVYAVISPQ 113 (213)
Q Consensus 64 DFS~p~~-~~~----~~~~~~~~g~~~ViGTTG~~~~~~~~~~~~~~~~~v~a~N 113 (213)
.-..++. ++. -+..+++.++-+++-|.|++..++.+.....+.-++..||
T Consensus 86 eavpe~~~vk~~l~~~l~~~~~~~~iI~SsTsgi~~s~l~~~~~~~~r~~~~hP~ 140 (495)
T PRK07531 86 ESVPERLDLKRRVLAEIDAAARPDALIGSSTSGFLPSDLQEGMTHPERLFVAHPY 140 (495)
T ss_pred EcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCcceEEEEecC
Confidence 6544432 222 2334445566688899999987776544333344455554
No 153
>cd06268 PBP1_ABC_transporter_LIVBP_like Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily. Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily. They are mostly present in archaea and eubacteria, and are primarily involved in scavenging solutes from the environment. ABC-type transporters couple ATP hydrolysis with the uptake and efflux of a wide range of substrates across bacterial membranes, including amino acids, peptides, lipids and sterols, and various drugs. These systems are comprised of transmembrane domains, nucleotide binding domains, and in most bacterial uptake systems, periplasmic binding proteins (PBPs) which transfer the ligand to the extracellular gate of the transmembrane domains. These PBPs bind their substrates selectively and with high affinity. Members of this group include ABC
Probab=63.95 E-value=81 Score=25.89 Aligned_cols=51 Identities=14% Similarity=0.089 Sum_probs=34.6
Q ss_pred chhHHHhhhhcCCCCEEEEEcCChHHHHHHHHHHHhcCCC-EEEEcCCCCHHH
Q 028115 45 DRESVLASVFDKYPNMIVVDYTVPAAVNGNAELYSKVGVP-FVMGTTGGDRVR 96 (213)
Q Consensus 45 ~~~~~l~~~~~~~~d~VvIDFS~p~~~~~~~~~~~~~g~~-~ViGTTG~~~~~ 96 (213)
+....+.++....+| ++|=++.+......++.+.+.|.. .++|+.++..+.
T Consensus 178 ~~~~~~~~l~~~~~~-~vi~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 229 (298)
T cd06268 178 DFSPLIAKLKAAGPD-AVFLAGYGGDAALFLKQAREAGLKVPIVGGDGAAAPA 229 (298)
T ss_pred cHHHHHHHHHhcCCC-EEEEccccchHHHHHHHHHHcCCCCcEEecCccCCHH
Confidence 455555666556788 677777777788888888888843 455666665443
No 154
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=63.61 E-value=41 Score=30.81 Aligned_cols=77 Identities=14% Similarity=0.132 Sum_probs=48.2
Q ss_pred EEEE--cCChHHHHHHHHHHHhcCCC---EEE--EcCCCC-------HHHHHHHHHccCCcEEEccChhHHHHHHHHHHH
Q 028115 61 IVVD--YTVPAAVNGNAELYSKVGVP---FVM--GTTGGD-------RVRLHETIENSNVYAVISPQMGKQVVAFLAAME 126 (213)
Q Consensus 61 VvID--FS~p~~~~~~~~~~~~~g~~---~Vi--GTTG~~-------~~~~~~~~~~~~~~~v~a~N~SlGv~ll~~l~~ 126 (213)
|++- .++.+.+...++++.+.|.+ +++ +|++|. ...+..+.+..+.||-+| -=+.|.. +-
T Consensus 136 vilStGmatl~Ei~~Av~~i~~~G~~~~~i~llhC~s~YP~~~~~~nL~~I~~Lk~~f~~pVG~S-dHt~G~~-----~~ 209 (329)
T TIGR03569 136 VILSTGMATLEEIEAAVGVLRDAGTPDSNITLLHCTTEYPAPFEDVNLNAMDTLKEAFDLPVGYS-DHTLGIE-----AP 209 (329)
T ss_pred EEEECCCCCHHHHHHHHHHHHHcCCCcCcEEEEEECCCCCCCcccCCHHHHHHHHHHhCCCEEEC-CCCccHH-----HH
Confidence 4543 46667777777788777775 777 888864 124555666667788875 4556642 22
Q ss_pred HHHHhcCCCCCCCcEEEEeccCCC
Q 028115 127 IMAEQFPGAFSGYSLQVLESHQAG 150 (213)
Q Consensus 127 ~aa~~l~~~~~~~dieI~E~HH~~ 150 (213)
.+|-.++ ..|+|.|-.-
T Consensus 210 ~aAvalG-------A~iIEkH~tl 226 (329)
T TIGR03569 210 IAAVALG-------ATVIEKHFTL 226 (329)
T ss_pred HHHHHcC-------CCEEEeCCCh
Confidence 3443443 3499999754
No 155
>cd06349 PBP1_ABC_ligand_binding_like_14 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=63.50 E-value=86 Score=27.33 Aligned_cols=53 Identities=13% Similarity=0.082 Sum_probs=37.6
Q ss_pred CCchhHHHhhhhcCCCCEEEEEcCChHHHHHHHHHHHhcCCC-EEEEcCCCCHHH
Q 028115 43 LSDRESVLASVFDKYPNMIVVDYTVPAAVNGNAELYSKVGVP-FVMGTTGGDRVR 96 (213)
Q Consensus 43 ~~~~~~~l~~~~~~~~d~VvIDFS~p~~~~~~~~~~~~~g~~-~ViGTTG~~~~~ 96 (213)
..|....+.++...+|| +||=+..+..+...++.+.+.|.. -+++++++....
T Consensus 176 ~~d~~~~v~~l~~~~~d-~v~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 229 (340)
T cd06349 176 EKDFRPTITRLRDANPD-AIILISYYNDGAPIARQARAVGLDIPVVASSSVYSPK 229 (340)
T ss_pred CCcHHHHHHHHHhcCCC-EEEEccccchHHHHHHHHHHcCCCCcEEccCCcCCHH
Confidence 34677777777777899 566666777788899999888763 456666654443
No 156
>PRK12939 short chain dehydrogenase; Provisional
Probab=63.47 E-value=52 Score=27.04 Aligned_cols=72 Identities=19% Similarity=0.211 Sum_probs=45.4
Q ss_pred ChHHHHHHHHhCCCeEEEEecCCCccccccccccCceeEeecCCchhHHHhhhhcC--CCCEEEEEcCChHHHHHHHHHH
Q 028115 1 MGKAVIKAADAAGLELVPVSFGTEEESGQKVEVCGKEIQVHGLSDRESVLASVFDK--YPNMIVVDYTVPAAVNGNAELY 78 (213)
Q Consensus 1 MG~~i~~~~~~~~~elv~~~~~~~~~~g~~~~~~~~~v~i~~~~~~~~~l~~~~~~--~~d~VvIDFS~p~~~~~~~~~~ 78 (213)
+|+.+++.+.+.|++++.. ++.+. ..+...+.+... +...+..|++.++.+...++.+
T Consensus 19 iG~~la~~l~~~G~~v~~~-~r~~~-------------------~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~ 78 (250)
T PRK12939 19 LGAAFAEALAEAGATVAFN-DGLAA-------------------EARELAAALEAAGGRAHAIAADLADPASVQRFFDAA 78 (250)
T ss_pred HHHHHHHHHHHcCCEEEEE-eCCHH-------------------HHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHH
Confidence 4788888888888887754 32221 111111111111 2333567999999999988877
Q ss_pred Hhc--CCCEEEEcCCC
Q 028115 79 SKV--GVPFVMGTTGG 92 (213)
Q Consensus 79 ~~~--g~~~ViGTTG~ 92 (213)
.+. ++..|+-..|.
T Consensus 79 ~~~~~~id~vi~~ag~ 94 (250)
T PRK12939 79 AAALGGLDGLVNNAGI 94 (250)
T ss_pred HHHcCCCCEEEECCCC
Confidence 664 67888888885
No 157
>PLN02778 3,5-epimerase/4-reductase
Probab=63.43 E-value=49 Score=29.04 Aligned_cols=70 Identities=19% Similarity=0.176 Sum_probs=40.1
Q ss_pred ChHHHHHHHHhCCCeEEEEecCCCccccccccccCceeEeecCCchhHHHhhhhcCCCCEEEEEcCC-------------
Q 028115 1 MGKAVIKAADAAGLELVPVSFGTEEESGQKVEVCGKEIQVHGLSDRESVLASVFDKYPNMIVVDYTV------------- 67 (213)
Q Consensus 1 MG~~i~~~~~~~~~elv~~~~~~~~~~g~~~~~~~~~v~i~~~~~~~~~l~~~~~~~~d~VvIDFS~------------- 67 (213)
.|+.+++.+.++|.+++.. .... .+.+.+...+....|| +||-+..
T Consensus 21 iG~~l~~~L~~~g~~V~~~-~~~~-------------------~~~~~v~~~l~~~~~D-~ViH~Aa~~~~~~~~~~~~~ 79 (298)
T PLN02778 21 IGGLLGKLCQEQGIDFHYG-SGRL-------------------ENRASLEADIDAVKPT-HVFNAAGVTGRPNVDWCESH 79 (298)
T ss_pred HHHHHHHHHHhCCCEEEEe-cCcc-------------------CCHHHHHHHHHhcCCC-EEEECCcccCCCCchhhhhC
Confidence 4888999888888887632 1100 1222222222223678 6775542
Q ss_pred h--------HHHHHHHHHHHhcCCCEEEEcCC
Q 028115 68 P--------AAVNGNAELYSKVGVPFVMGTTG 91 (213)
Q Consensus 68 p--------~~~~~~~~~~~~~g~~~ViGTTG 91 (213)
| ..+...+++|.++|++.|+-+|+
T Consensus 80 p~~~~~~Nv~gt~~ll~aa~~~gv~~v~~sS~ 111 (298)
T PLN02778 80 KVETIRANVVGTLTLADVCRERGLVLTNYATG 111 (298)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCEEEEecc
Confidence 2 13556778899999887665554
No 158
>TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family. These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff.
Probab=63.35 E-value=66 Score=25.61 Aligned_cols=77 Identities=22% Similarity=0.138 Sum_probs=47.2
Q ss_pred ChHHHHHHHHhCCCeEEEEecCCCccccccccccCceeEeecCCchhHHHhhhhcCCCCEEEEEcCChHHHHHHHHHHHh
Q 028115 1 MGKAVIKAADAAGLELVPVSFGTEEESGQKVEVCGKEIQVHGLSDRESVLASVFDKYPNMIVVDYTVPAAVNGNAELYSK 80 (213)
Q Consensus 1 MG~~i~~~~~~~~~elv~~~~~~~~~~g~~~~~~~~~v~i~~~~~~~~~l~~~~~~~~d~VvIDFS~p~~~~~~~~~~~~ 80 (213)
+|+.+++.+.+.++++++.+|..+...++.+ . ++++... .+. +..... ..+-++|....+....+.++.+.+
T Consensus 10 ~g~~~~~~l~~~g~~vvgfid~~~~~~~~~i--~--g~pvlg~--~~~-l~~~~~-~~~~~iiai~~~~~~~~i~~~l~~ 81 (201)
T TIGR03570 10 HGRVVADIAEDSGWEIVGFLDDNPALQGTSV--D--GLPVLGG--DED-LLRYPP-DEVDLVVAIGDNKLRRRLFEKLKA 81 (201)
T ss_pred HHHHHHHHHHhCCCEEEEEEcCCccccCccc--C--CccEECC--HHH-Hhhhcc-cccEEEEEcCCHHHHHHHHHHHHh
Confidence 4788888888889999999986543333322 1 3444432 222 222111 223367887777878888888887
Q ss_pred cCCCE
Q 028115 81 VGVPF 85 (213)
Q Consensus 81 ~g~~~ 85 (213)
.+.++
T Consensus 82 ~g~~~ 86 (201)
T TIGR03570 82 KGYRF 86 (201)
T ss_pred CCCcc
Confidence 77654
No 159
>PTZ00431 pyrroline carboxylate reductase; Provisional
Probab=63.25 E-value=91 Score=26.94 Aligned_cols=44 Identities=14% Similarity=-0.023 Sum_probs=34.3
Q ss_pred CCCEEEEEcCChHHHHHHHHHHHh--cCCCEEEEcCCCCHHHHHHHH
Q 028115 57 YPNMIVVDYTVPAAVNGNAELYSK--VGVPFVMGTTGGDRVRLHETI 101 (213)
Q Consensus 57 ~~d~VvIDFS~p~~~~~~~~~~~~--~g~~~ViGTTG~~~~~~~~~~ 101 (213)
++| +||=...|..+.+.++.... .+..+|+-..|.+.+.++.+.
T Consensus 57 ~~D-~Vilavkp~~~~~vl~~i~~~l~~~~iIS~~aGi~~~~l~~~~ 102 (260)
T PTZ00431 57 TCD-IIVLAVKPDLAGKVLLEIKPYLGSKLLISICGGLNLKTLEEMV 102 (260)
T ss_pred hCC-EEEEEeCHHHHHHHHHHHHhhccCCEEEEEeCCccHHHHHHHc
Confidence 578 77777999999888887654 245688999999988887764
No 160
>PF00532 Peripla_BP_1: Periplasmic binding proteins and sugar binding domain of LacI family; InterPro: IPR001761 This family includes the periplasmic binding proteins, and the LacI family transcriptional regulators. The periplasmic binding proteins are the primary receptors for chemotaxis and transport of many sugar based solutes. The LacI family of proteins consist of transcriptional regulators related to the lac repressor. In this case, generally the sugar binding domain binds a sugar which changes the DNA binding activity of the repressor domain (lacI) [, ].; PDB: 1BAP_A 7ABP_A 6ABP_A 1ABF_A 5ABP_A 2WRZ_B 9ABP_A 1APB_A 1ABE_A 8ABP_A ....
Probab=63.21 E-value=58 Score=28.29 Aligned_cols=43 Identities=14% Similarity=0.208 Sum_probs=27.3
Q ss_pred hHHHhhhhcCCCCEEEEEcCChHHHHHHHHHHHhcCCCEEEEcCC
Q 028115 47 ESVLASVFDKYPNMIVVDYTVPAAVNGNAELYSKVGVPFVMGTTG 91 (213)
Q Consensus 47 ~~~l~~~~~~~~d~VvIDFS~p~~~~~~~~~~~~~g~~~ViGTTG 91 (213)
++.++.+....+|.+|+ +|.... .+.+....+.++|+|+.-.-
T Consensus 46 e~~i~~l~~~~vDGiI~-~s~~~~-~~~l~~~~~~~iPvV~~~~~ 88 (279)
T PF00532_consen 46 EEYIELLLQRRVDGIIL-ASSEND-DEELRRLIKSGIPVVLIDRY 88 (279)
T ss_dssp HHHHHHHHHTTSSEEEE-ESSSCT-CHHHHHHHHTTSEEEEESS-
T ss_pred HHHHHHHHhcCCCEEEE-ecccCC-hHHHHHHHHcCCCEEEEEec
Confidence 34556666678994333 355444 66777777779998876543
No 161
>PRK09490 metH B12-dependent methionine synthase; Provisional
Probab=63.10 E-value=88 Score=33.83 Aligned_cols=80 Identities=13% Similarity=0.162 Sum_probs=48.7
Q ss_pred hHHHhhhhcCCCCEEEEEcC---ChHHHHHHHHHHHhcC--CCEEEEcCCCCHHH-HHHHHHccCCcEEEccChhHHHHH
Q 028115 47 ESVLASVFDKYPNMIVVDYT---VPAAVNGNAELYSKVG--VPFVMGTTGGDRVR-LHETIENSNVYAVISPQMGKQVVA 120 (213)
Q Consensus 47 ~~~l~~~~~~~~d~VvIDFS---~p~~~~~~~~~~~~~g--~~~ViGTTG~~~~~-~~~~~~~~~~~~v~a~N~SlGv~l 120 (213)
++.++...+.+||.|.+=+. +...+.+.++...+.+ +|+++|=.=.+++. -.++.....-+.+|+.+-+-+|.+
T Consensus 792 e~iv~aa~e~~~diVgLS~L~t~s~~~m~~~i~~L~~~g~~v~v~vGGa~~s~~~ta~~i~~~y~gad~y~~DA~~~v~~ 871 (1229)
T PRK09490 792 EKILETAKEENADIIGLSGLITPSLDEMVHVAKEMERQGFTIPLLIGGATTSKAHTAVKIAPNYSGPVVYVTDASRAVGV 871 (1229)
T ss_pred HHHHHHHHHhCCCEEEEcCcchhhHHHHHHHHHHHHhcCCCCeEEEEeeccchhhhhhhhhhcccCCcEEecCHHHHHHH
Confidence 33344444568996566653 3455666777777765 66666644344432 122322222478999999999998
Q ss_pred HHHHHH
Q 028115 121 FLAAME 126 (213)
Q Consensus 121 l~~l~~ 126 (213)
..+++.
T Consensus 872 ~~~l~~ 877 (1229)
T PRK09490 872 VSSLLS 877 (1229)
T ss_pred HHHHhC
Confidence 887764
No 162
>cd06309 PBP1_YtfQ_like Periplasmic binding domain of ABC-type YtfQ-like transport systems. Periplasmic binding domain of ABC-type YtfQ-like transport systems. The YtfQ protein from Escherichia coli is up-regulated under glucose-limited conditions and shares homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their ligand specificity is not determined experimentally.
Probab=63.06 E-value=69 Score=26.71 Aligned_cols=40 Identities=13% Similarity=0.208 Sum_probs=27.0
Q ss_pred HhhhhcCCCCEEEEEcCChHHHHHHHHHHHhcCCCEEEEc
Q 028115 50 LASVFDKYPNMIVVDYTVPAAVNGNAELYSKVGVPFVMGT 89 (213)
Q Consensus 50 l~~~~~~~~d~VvIDFS~p~~~~~~~~~~~~~g~~~ViGT 89 (213)
+..+....+|.++|.-..++...+.++.+.+.++|+|.--
T Consensus 48 i~~l~~~~vdgiIi~~~~~~~~~~~i~~~~~~~iPvV~~~ 87 (273)
T cd06309 48 IRSFIAQGVDVIILAPVVETGWDPVLKEAKAAGIPVILVD 87 (273)
T ss_pred HHHHHHcCCCEEEEcCCccccchHHHHHHHHCCCCEEEEe
Confidence 3344445788666655555655677888889999987654
No 163
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=62.91 E-value=28 Score=31.22 Aligned_cols=33 Identities=12% Similarity=0.112 Sum_probs=24.0
Q ss_pred CCCEEEEEcCC-hHHHHHHHHHHHhcCCCEEEEcC
Q 028115 57 YPNMIVVDYTV-PAAVNGNAELYSKVGVPFVMGTT 90 (213)
Q Consensus 57 ~~d~VvIDFS~-p~~~~~~~~~~~~~g~~~ViGTT 90 (213)
.+| ++||.+- ++.+...++.+...|.=+.+|.+
T Consensus 259 g~d-~vid~~G~~~~~~~~~~~l~~~G~iv~~G~~ 292 (371)
T cd08281 259 GVD-YAFEMAGSVPALETAYEITRRGGTTVTAGLP 292 (371)
T ss_pred CCC-EEEECCCChHHHHHHHHHHhcCCEEEEEccC
Confidence 467 8899884 66777777777777766667765
No 164
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=62.60 E-value=40 Score=30.35 Aligned_cols=54 Identities=11% Similarity=0.071 Sum_probs=37.9
Q ss_pred CCCEEEEEcCChHHHHHHHHHHHhcCCCEEEEcCCCC-----HH----HHHHHHHccCCcEEE
Q 028115 57 YPNMIVVDYTVPAAVNGNAELYSKVGVPFVMGTTGGD-----RV----RLHETIENSNVYAVI 110 (213)
Q Consensus 57 ~~d~VvIDFS~p~~~~~~~~~~~~~g~~~ViGTTG~~-----~~----~~~~~~~~~~~~~v~ 110 (213)
+.-+-.+.+.+.+.+...++.|.+.+.|+++.++--. .+ -.+.+++.+++||.+
T Consensus 17 ~yAV~AfN~~n~e~~~avi~AAee~~sPvIlq~s~~~~~~~~~~~~~~~~~~~a~~~~VPVal 79 (286)
T PRK12738 17 GYAVPAFNIHNAETIQAILEVCSEMRSPVILAGTPGTFKHIALEEIYALCSAYSTTYNMPLAL 79 (286)
T ss_pred CceEEEEEeCCHHHHHHHHHHHHHHCCCEEEEcCcchhhhCCHHHHHHHHHHHHHHCCCCEEE
Confidence 3344578888888888999999999999888775421 11 234556667788865
No 165
>cd06318 PBP1_ABC_sugar_binding_like_9 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=62.56 E-value=91 Score=26.01 Aligned_cols=39 Identities=15% Similarity=0.303 Sum_probs=25.5
Q ss_pred HhhhhcCCCCEEEEEcCChHHHHHHHHHHHhcCCCEEEE
Q 028115 50 LASVFDKYPNMIVVDYTVPAAVNGNAELYSKVGVPFVMG 88 (213)
Q Consensus 50 l~~~~~~~~d~VvIDFS~p~~~~~~~~~~~~~g~~~ViG 88 (213)
++.+....+|.++|-=+.++.+.+.++.+.+.|+|+|+=
T Consensus 48 i~~~~~~~~Dgiii~~~~~~~~~~~i~~~~~~~iPvV~~ 86 (282)
T cd06318 48 VEDLLTRGVNVLIINPVDPEGLVPAVAAAKAAGVPVVVV 86 (282)
T ss_pred HHHHHHcCCCEEEEecCCccchHHHHHHHHHCCCCEEEe
Confidence 444445678944442233556677889999999998843
No 166
>cd01536 PBP1_ABC_sugar_binding_like Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. The members of this family function as the primary receptors for chemotaxis and transport of many sugar based solutes in bacteria and archaea. The sugar binding domain is also homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR. Moreover, this periplasmic binding domain, also known as Venus flytrap domain, undergoes transition from an open to a closed conformational state upon the binding of ligands such as lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. This family also includes the periplasmic binding domain of autoinducer-2 (AI-2
Probab=62.54 E-value=84 Score=25.59 Aligned_cols=41 Identities=15% Similarity=0.207 Sum_probs=25.4
Q ss_pred HhhhhcCCCCEEEEEcCChHHHHHHHHHHHhcCCCEEEEcC
Q 028115 50 LASVFDKYPNMIVVDYTVPAAVNGNAELYSKVGVPFVMGTT 90 (213)
Q Consensus 50 l~~~~~~~~d~VvIDFS~p~~~~~~~~~~~~~g~~~ViGTT 90 (213)
+.++...++|.|++-.+.++...+.++.+.+.++|+|.-.+
T Consensus 48 ~~~l~~~~vdgvi~~~~~~~~~~~~~~~l~~~~ip~V~~~~ 88 (267)
T cd01536 48 IEDLIAQGVDGIIISPVDSAALTPALKKANAAGIPVVTVDS 88 (267)
T ss_pred HHHHHHcCCCEEEEeCCCchhHHHHHHHHHHCCCcEEEecC
Confidence 33333447884444444444445677888899999988543
No 167
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=62.29 E-value=68 Score=24.46 Aligned_cols=67 Identities=12% Similarity=0.057 Sum_probs=41.9
Q ss_pred HhhhhcCCCCEEEEEcCCh---HHHHHHHHHHHhc---CCCEEEEcCCCCHHHHHHHHHccCCcEEEccChhHHH
Q 028115 50 LASVFDKYPNMIVVDYTVP---AAVNGNAELYSKV---GVPFVMGTTGGDRVRLHETIENSNVYAVISPQMGKQV 118 (213)
Q Consensus 50 l~~~~~~~~d~VvIDFS~p---~~~~~~~~~~~~~---g~~~ViGTTG~~~~~~~~~~~~~~~~~v~a~N~SlGv 118 (213)
++...+.+||.|+|=++.+ +.+.+.++.+.+. ++++++|=++. .++.+++.+ +++--++-++.+.--
T Consensus 43 ~~~a~~~~~d~V~iS~~~~~~~~~~~~~~~~L~~~~~~~i~i~~GG~~~-~~~~~~~~~-~G~d~~~~~~~~~~~ 115 (122)
T cd02071 43 VEAAIQEDVDVIGLSSLSGGHMTLFPEVIELLRELGAGDILVVGGGIIP-PEDYELLKE-MGVAEIFGPGTSIEE 115 (122)
T ss_pred HHHHHHcCCCEEEEcccchhhHHHHHHHHHHHHhcCCCCCEEEEECCCC-HHHHHHHHH-CCCCEEECCCCCHHH
Confidence 3334456899767766644 4455566666666 56777776655 344555554 457778888877643
No 168
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=62.05 E-value=34 Score=30.29 Aligned_cols=15 Identities=0% Similarity=-0.059 Sum_probs=8.8
Q ss_pred cCCCEEEEcCCCCHH
Q 028115 81 VGVPFVMGTTGGDRV 95 (213)
Q Consensus 81 ~g~~~ViGTTG~~~~ 95 (213)
.++|+++|+++.+.+
T Consensus 69 ~~~pvi~gv~~~~t~ 83 (290)
T TIGR00683 69 DQIALIAQVGSVNLK 83 (290)
T ss_pred CCCcEEEecCCCCHH
Confidence 346666666665543
No 169
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=61.99 E-value=49 Score=32.01 Aligned_cols=23 Identities=17% Similarity=0.200 Sum_probs=18.9
Q ss_pred ChHHHHHHHHhCCCeEEEEecCCC
Q 028115 1 MGKAVIKAADAAGLELVPVSFGTE 24 (213)
Q Consensus 1 MG~~i~~~~~~~~~elv~~~~~~~ 24 (213)
||+.+++.+.+.|++|+. .++.+
T Consensus 17 MG~~mA~nL~~~G~~V~V-~NRt~ 39 (493)
T PLN02350 17 MGQNLALNIAEKGFPISV-YNRTT 39 (493)
T ss_pred HHHHHHHHHHhCCCeEEE-ECCCH
Confidence 999999999999999873 56544
No 170
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=61.97 E-value=25 Score=31.50 Aligned_cols=17 Identities=24% Similarity=0.223 Sum_probs=10.2
Q ss_pred HhcCCCEEEEcCCCCHH
Q 028115 79 SKVGVPFVMGTTGGDRV 95 (213)
Q Consensus 79 ~~~g~~~ViGTTG~~~~ 95 (213)
.+.++|+++|++..+.+
T Consensus 74 ~~grvpvi~Gv~~~~t~ 90 (309)
T cd00952 74 VAGRVPVFVGATTLNTR 90 (309)
T ss_pred hCCCCCEEEEeccCCHH
Confidence 34556777777666543
No 171
>KOG1014 consensus 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3 [Lipid transport and metabolism]
Probab=61.91 E-value=15 Score=33.62 Aligned_cols=73 Identities=22% Similarity=0.265 Sum_probs=44.2
Q ss_pred ChHHHHHHHHhCCCeEEEEecCCCccccccccccCceeEeecCCchhHHHhhhhcC---CCCEEEEEcCChHHHHHHHHH
Q 028115 1 MGKAVIKAADAAGLELVPVSFGTEEESGQKVEVCGKEIQVHGLSDRESVLASVFDK---YPNMIVVDYTVPAAVNGNAEL 77 (213)
Q Consensus 1 MG~~i~~~~~~~~~elv~~~~~~~~~~g~~~~~~~~~v~i~~~~~~~~~l~~~~~~---~~d~VvIDFS~p~~~~~~~~~ 77 (213)
.|++.++.+..+|+.++- +.+..+ .++.+-+++.+. ....+++|||.++..++.++.
T Consensus 61 IGKayA~eLAkrG~nvvL-IsRt~~-------------------KL~~v~kEI~~~~~vev~~i~~Dft~~~~~ye~i~~ 120 (312)
T KOG1014|consen 61 IGKAYARELAKRGFNVVL-ISRTQE-------------------KLEAVAKEIEEKYKVEVRIIAIDFTKGDEVYEKLLE 120 (312)
T ss_pred chHHHHHHHHHcCCEEEE-EeCCHH-------------------HHHHHHHHHHHHhCcEEEEEEEecCCCchhHHHHHH
Confidence 488888888888988653 333332 222222222211 123479999999997776555
Q ss_pred H-HhcCCCEEEEcCCCC
Q 028115 78 Y-SKVGVPFVMGTTGGD 93 (213)
Q Consensus 78 ~-~~~g~~~ViGTTG~~ 93 (213)
. ....+-+.|---|-.
T Consensus 121 ~l~~~~VgILVNNvG~~ 137 (312)
T KOG1014|consen 121 KLAGLDVGILVNNVGMS 137 (312)
T ss_pred HhcCCceEEEEeccccc
Confidence 4 446677888777744
No 172
>cd06321 PBP1_ABC_sugar_binding_like_11 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=61.85 E-value=92 Score=25.85 Aligned_cols=36 Identities=8% Similarity=0.101 Sum_probs=26.2
Q ss_pred cCCCCEEEEEcCChHHHHHHHHHHHhcCCCEEEEcC
Q 028115 55 DKYPNMIVVDYTVPAAVNGNAELYSKVGVPFVMGTT 90 (213)
Q Consensus 55 ~~~~d~VvIDFS~p~~~~~~~~~~~~~g~~~ViGTT 90 (213)
...+|.++|.-+.++...+.++.+.+.++|+|+--.
T Consensus 55 ~~~~dgiIi~~~~~~~~~~~i~~~~~~~ipvv~~~~ 90 (271)
T cd06321 55 AAKVDLILLNAVDSKGIAPAVKRAQAAGIVVVAVDV 90 (271)
T ss_pred HhCCCEEEEeCCChhHhHHHHHHHHHCCCeEEEecC
Confidence 457886666544556667888999999999887654
No 173
>cd06375 PBP1_mGluR_groupII Ligand binding domain of the group II metabotropic glutamate receptor. Ligand binding domain of the group II metabotropic glutamate receptor, a family that contains mGlu2R and mGlu3R, all of which inhibit adenylyl cyclase. The metabotropic glutamate receptor is a member of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into intracellular responses. The mGluRs are classified into three groups which comprise eight subtypes
Probab=61.51 E-value=42 Score=31.51 Aligned_cols=48 Identities=13% Similarity=0.163 Sum_probs=36.8
Q ss_pred chhHHHhhhhc-CCCCEEEEEcCChHHHHHHHHHHHhcCCC-EEEEcCCCC
Q 028115 45 DRESVLASVFD-KYPNMIVVDYTVPAAVNGNAELYSKVGVP-FVMGTTGGD 93 (213)
Q Consensus 45 ~~~~~l~~~~~-~~~d~VvIDFS~p~~~~~~~~~~~~~g~~-~ViGTTG~~ 93 (213)
|+...+.++.. ..++ |||=|+.++.+...++.+.+.|+. ..+||.||.
T Consensus 219 d~~~~l~~l~~~~~a~-vVvl~~~~~~~~~ll~~a~~~g~~~~wigs~~~~ 268 (458)
T cd06375 219 SYDSVIRKLLQKPNAR-VVVLFTRSEDARELLAAAKRLNASFTWVASDGWG 268 (458)
T ss_pred HHHHHHHHHhccCCCE-EEEEecChHHHHHHHHHHHHcCCcEEEEEecccc
Confidence 55555655432 4678 777788888899999999999886 688999995
No 174
>PTZ00023 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=61.42 E-value=32 Score=31.69 Aligned_cols=87 Identities=18% Similarity=0.158 Sum_probs=55.9
Q ss_pred ChHHHHHHHH-hCCCeEEEEecCC--Ccc----------cc---cc-------ccccCceeEeecCCchhHHHhhhhcCC
Q 028115 1 MGKAVIKAAD-AAGLELVPVSFGT--EEE----------SG---QK-------VEVCGKEIQVHGLSDRESVLASVFDKY 57 (213)
Q Consensus 1 MG~~i~~~~~-~~~~elv~~~~~~--~~~----------~g---~~-------~~~~~~~v~i~~~~~~~~~l~~~~~~~ 57 (213)
+||.+.+++. .+++++|+.-+.. ++. -| .. +-+.|..+.++...|+++. ...+..
T Consensus 13 IGr~v~r~~~~~~~~~vvaiNd~~~~~~~~ayll~yDS~hG~~~~~v~~~~~~l~i~g~~i~~~~~~dp~~l--pW~~~g 90 (337)
T PTZ00023 13 IGRLVFRAALEREDVEVVAINDPFMTLDYMCYLLKYDSVHGSLPAEVSVTDGFLMIGSKKVHVFFEKDPAAI--PWGKNG 90 (337)
T ss_pred HHHHHHHHHHhcCCeEEEEecCCCCChHHhhhhheeecCCCCCCCcEEecCCEEEECCeEEEEEeCCChhhC--CccccC
Confidence 4899999877 6689999874411 000 01 11 1233445677666666652 133346
Q ss_pred CCEEEEEcCChHHHHHHHHHHHhcCCCEEEEcC
Q 028115 58 PNMIVVDYTVPAAVNGNAELYSKVGVPFVMGTT 90 (213)
Q Consensus 58 ~d~VvIDFS~p~~~~~~~~~~~~~g~~~ViGTT 90 (213)
.| ++++-|-.....+....+++.|...|+=+.
T Consensus 91 vD-iVle~tG~~~s~~~a~~~l~aGak~V~iSa 122 (337)
T PTZ00023 91 VD-VVCESTGVFLTKEKAQAHLKGGAKKVIMSA 122 (337)
T ss_pred CC-EEEEecchhcCHHHHHHHhhCCCEEEEeCC
Confidence 77 889888888888888888888877666554
No 175
>cd06335 PBP1_ABC_ligand_binding_like_2 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=61.38 E-value=47 Score=29.31 Aligned_cols=52 Identities=12% Similarity=-0.041 Sum_probs=36.7
Q ss_pred CCchhHHHhhhhcCCCCEEEEEcCChHHHHHHHHHHHhcCCCE-EEEcCCCCHH
Q 028115 43 LSDRESVLASVFDKYPNMIVVDYTVPAAVNGNAELYSKVGVPF-VMGTTGGDRV 95 (213)
Q Consensus 43 ~~~~~~~l~~~~~~~~d~VvIDFS~p~~~~~~~~~~~~~g~~~-ViGTTG~~~~ 95 (213)
..|+...+.++.+..|| +|+=+..+......++.+.+.|... +++..++...
T Consensus 179 ~~d~s~~i~~i~~~~~d-~v~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 231 (347)
T cd06335 179 DKDMTAQLLRAKAAGAD-AIIIVGNGPEGAQIANGMAKLGWKVPIISHWGLSGG 231 (347)
T ss_pred CccHHHHHHHHHhCCCC-EEEEEecChHHHHHHHHHHHcCCCCcEecccCCcCc
Confidence 35777777788778899 5555667777777899999988864 4565555443
No 176
>PLN02700 homoserine dehydrogenase family protein
Probab=60.94 E-value=74 Score=29.80 Aligned_cols=65 Identities=11% Similarity=0.063 Sum_probs=50.6
Q ss_pred CCEEEEEcCChHHHHHHHHHHHhcCCCEEEEcCCC---CHHHHHHHHHccCCcEEEccChhHHHHHHHHH
Q 028115 58 PNMIVVDYTVPAAVNGNAELYSKVGVPFVMGTTGG---DRVRLHETIENSNVYAVISPQMGKQVVAFLAA 124 (213)
Q Consensus 58 ~d~VvIDFS~p~~~~~~~~~~~~~g~~~ViGTTG~---~~~~~~~~~~~~~~~~v~a~N~SlGv~ll~~l 124 (213)
.+ |+||-|.-..+.++++.++++|+.+|..--+. ..+++.++++ .+..+.|.+|..=|.-++..+
T Consensus 110 ~~-ViVD~T~s~~~~~~y~~aL~~G~hVVTaNK~~~a~~~~~~~~la~-~~~~~~yEatVgaGlPiI~tl 177 (377)
T PLN02700 110 GL-VVVDCSASMETIGALNEAVDLGCCIVLANKKPLTSTLEDYDKLAA-HPRRIRHESTVGAGLPVIASL 177 (377)
T ss_pred CC-EEEECCCChHHHHHHHHHHHCCCeEEcCCchHhccCHHHHHHHHH-cCCeEEEEeeeeeccchHHHH
Confidence 46 99999998888999999999999999876553 2456667764 468888888887776665543
No 177
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=60.38 E-value=82 Score=27.80 Aligned_cols=84 Identities=12% Similarity=0.105 Sum_probs=43.7
Q ss_pred ChHHHHHHHHhCCCeEEEEecCCCccccccccccCceeEeecCCchhHHHhhhhcCCCCEEEEEcCChHHHHHHHHHHH-
Q 028115 1 MGKAVIKAADAAGLELVPVSFGTEEESGQKVEVCGKEIQVHGLSDRESVLASVFDKYPNMIVVDYTVPAAVNGNAELYS- 79 (213)
Q Consensus 1 MG~~i~~~~~~~~~elv~~~~~~~~~~g~~~~~~~~~v~i~~~~~~~~~l~~~~~~~~d~VvIDFS~p~~~~~~~~~~~- 79 (213)
||..+++.+.+.|++|+. .++.+....+ + ...+... ..+.++..+.+ ..+| +||=...+..+.+.++...
T Consensus 11 mG~~la~~L~~~g~~V~~-~dr~~~~~~~-l--~~~g~~~--~~s~~~~~~~~--~~~d-vIi~~vp~~~~~~v~~~l~~ 81 (298)
T TIGR00872 11 MGANIVRRLAKRGHDCVG-YDHDQDAVKA-M--KEDRTTG--VANLRELSQRL--SAPR-VVWVMVPHGIVDAVLEELAP 81 (298)
T ss_pred HHHHHHHHHHHCCCEEEE-EECCHHHHHH-H--HHcCCcc--cCCHHHHHhhc--CCCC-EEEEEcCchHHHHHHHHHHh
Confidence 899999998888999875 5655422111 1 0111111 12333332222 2467 5554444445555554433
Q ss_pred --hcCCCEEEEcCCCC
Q 028115 80 --KVGVPFVMGTTGGD 93 (213)
Q Consensus 80 --~~g~~~ViGTTG~~ 93 (213)
+.|.-+|-++|+..
T Consensus 82 ~l~~g~ivid~st~~~ 97 (298)
T TIGR00872 82 TLEKGDIVIDGGNSYY 97 (298)
T ss_pred hCCCCCEEEECCCCCc
Confidence 34555677777753
No 178
>cd01391 Periplasmic_Binding_Protein_Type_1 Type 1 periplasmic binding fold superfamily. Type 1 periplasmic binding fold superfamily. This model and hierarchy represent the ligand binding domains of the LacI family of transcriptional regulators, periplasmic binding proteins of the ABC-type transport systems, the family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases including the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domains of the ionotropic glutamate receptors (iGluRs). In LacI-like transcriptional regulator and the bacterial periplasmic binding proteins the ligands are monosaccharides including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars, with a few exceptions. Periplasmic sugar binding proteins are one of the components of ABC transporters and are involved in the active transport of water-soluble ligands. The LacI family of proteins con
Probab=60.32 E-value=84 Score=24.89 Aligned_cols=41 Identities=15% Similarity=0.182 Sum_probs=26.6
Q ss_pred HhhhhcCCCCEEEEEcCChHHHHHHHHHHHhcCCCEEEEcCC
Q 028115 50 LASVFDKYPNMIVVDYTVPAAVNGNAELYSKVGVPFVMGTTG 91 (213)
Q Consensus 50 l~~~~~~~~d~VvIDFS~p~~~~~~~~~~~~~g~~~ViGTTG 91 (213)
+..+....+| .+|=+..........+.+.+.++|+|.-.+.
T Consensus 51 ~~~~~~~~~d-~ii~~~~~~~~~~~~~~~~~~~ip~v~~~~~ 91 (269)
T cd01391 51 LRDLIQQGVD-GIIGPPSSSSALAVVELAAAAGIPVVSLDAT 91 (269)
T ss_pred HHHHHHcCCC-EEEecCCCHHHHHHHHHHHHcCCcEEEecCC
Confidence 3334445688 4555555444444788889999999886543
No 179
>cd06319 PBP1_ABC_sugar_binding_like_10 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=60.13 E-value=47 Score=27.65 Aligned_cols=34 Identities=24% Similarity=0.254 Sum_probs=24.6
Q ss_pred cCCCCEEEEEcCChHHHHHHHHHHHhcCCCEEEE
Q 028115 55 DKYPNMIVVDYTVPAAVNGNAELYSKVGVPFVMG 88 (213)
Q Consensus 55 ~~~~d~VvIDFS~p~~~~~~~~~~~~~g~~~ViG 88 (213)
...+|.++|.-..++...+.++.+.+.|+|+|+-
T Consensus 53 ~~~~dgiii~~~~~~~~~~~l~~~~~~~ipvV~~ 86 (277)
T cd06319 53 DKGVSGIIISPTNSSAAVTLLKLAAQAKIPVVIA 86 (277)
T ss_pred hcCCCEEEEcCCchhhhHHHHHHHHHCCCCEEEE
Confidence 3578855565555566678889999999998843
No 180
>cd06323 PBP1_ribose_binding Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Members of this group are belonging to the type I periplasmic binding protein superfamily, whose members are involved in chemotaxis, ATP-binding cassette transport, and intercellular communication in central nervous system. The thermophilic and mesophilic ribose-binding proteins are structurally very similar, but differ substantially in thermal stability.
Probab=59.88 E-value=97 Score=25.43 Aligned_cols=40 Identities=15% Similarity=0.208 Sum_probs=24.4
Q ss_pred HHhhhhcCCCCEEEEEcCChHHHHHHHHHHHhcCCCEEEE
Q 028115 49 VLASVFDKYPNMIVVDYTVPAAVNGNAELYSKVGVPFVMG 88 (213)
Q Consensus 49 ~l~~~~~~~~d~VvIDFS~p~~~~~~~~~~~~~g~~~ViG 88 (213)
.+..+....+|.|++--+.+....+.++.+.+.++|+|.-
T Consensus 47 ~~~~~~~~~~dgii~~~~~~~~~~~~l~~l~~~~ipvv~~ 86 (268)
T cd06323 47 DIEDLITRGVDAIIINPTDSDAVVPAVKAANEAGIPVFTI 86 (268)
T ss_pred HHHHHHHcCCCEEEEcCCChHHHHHHHHHHHHCCCcEEEE
Confidence 3444444578844552233344556778888899998855
No 181
>cd01018 ZntC Metal binding protein ZntC. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and bind their specific ligands in the cleft between these domains. In addition, many of these proteins possess a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=59.88 E-value=61 Score=28.13 Aligned_cols=48 Identities=15% Similarity=0.089 Sum_probs=29.5
Q ss_pred ChHHHHHHHHHHHhcCCCEEEEcCCCCHHHHHHHHHccCCcEEEccCh
Q 028115 67 VPAAVNGNAELYSKVGVPFVMGTTGGDRVRLHETIENSNVYAVISPQM 114 (213)
Q Consensus 67 ~p~~~~~~~~~~~~~g~~~ViGTTG~~~~~~~~~~~~~~~~~v~a~N~ 114 (213)
+|..+.+.++.+.++++++|+.-+.++....+.+++..+++++.-.++
T Consensus 202 s~~~l~~l~~~ik~~~v~~if~e~~~~~~~~~~la~~~g~~v~~ld~~ 249 (266)
T cd01018 202 SPADLKRLIDLAKEKGVRVVFVQPQFSTKSAEAIAREIGAKVVTIDPL 249 (266)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHcCCeEEEeCCc
Confidence 355566666666666666666666666666666666666666554443
No 182
>KOG1255 consensus Succinyl-CoA synthetase, alpha subunit [Energy production and conversion]
Probab=59.83 E-value=66 Score=28.90 Aligned_cols=95 Identities=15% Similarity=0.148 Sum_probs=58.4
Q ss_pred HHHHhCCCeEEEEecCCCccccccccccCceeEeecCCchhHHHhhhhcCCCCEEEEEcCChHHHHHHHHHHHhcCCCEE
Q 028115 7 KAADAAGLELVPVSFGTEEESGQKVEVCGKEIQVHGLSDRESVLASVFDKYPNMIVVDYTVPAAVNGNAELYSKVGVPFV 86 (213)
Q Consensus 7 ~~~~~~~~elv~~~~~~~~~~g~~~~~~~~~v~i~~~~~~~~~l~~~~~~~~d~VvIDFS~p~~~~~~~~~~~~~g~~~V 86 (213)
+.+.+.|..+|+++.+.- -|. .-.|.+++. +..++.+ +..+| .-+=|--|......+..+.+.-+|+|
T Consensus 56 ~q~~eYgTk~VgG~~pkK--~Gt----~HLG~PVF~--sV~eA~~---~t~a~-AsvIyVPpp~Aa~aI~eaieaEipLi 123 (329)
T KOG1255|consen 56 QQALEYGTKVVGGVNPKK--GGT----THLGLPVFN--SVAEAKK---ETGAD-ASVIYVPPPFAAAAIEEAIEAEIPLI 123 (329)
T ss_pred HHHHHhCCceeeccCCCc--Ccc----cccCchhhh--hHHHHHH---hhCCC-ceEEEeCChhHHHHHHHHHhccCCEE
Confidence 344577888998877422 111 112455553 3444433 35788 56678888899999999999999998
Q ss_pred EEcC-CCCHHHHHHHHHc--c-CCcEEEccC
Q 028115 87 MGTT-GGDRVRLHETIEN--S-NVYAVISPQ 113 (213)
Q Consensus 87 iGTT-G~~~~~~~~~~~~--~-~~~~v~a~N 113 (213)
++-| |....++-++... . ...=++-||
T Consensus 124 VcITEGIPQhDMvrvk~~L~~Q~KtRLvGPN 154 (329)
T KOG1255|consen 124 VCITEGIPQHDMVRVKHALNSQSKTRLVGPN 154 (329)
T ss_pred EEecCCCchhhHHHHHHHHhhcccceecCCC
Confidence 8866 5555555444331 1 134455566
No 183
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=59.83 E-value=48 Score=29.80 Aligned_cols=54 Identities=7% Similarity=0.001 Sum_probs=39.4
Q ss_pred CCCEEEEEcCChHHHHHHHHHHHhcCCCEEEEcCCCCH-----H----HHHHHHHccCCcEEE
Q 028115 57 YPNMIVVDYTVPAAVNGNAELYSKVGVPFVMGTTGGDR-----V----RLHETIENSNVYAVI 110 (213)
Q Consensus 57 ~~d~VvIDFS~p~~~~~~~~~~~~~g~~~ViGTTG~~~-----~----~~~~~~~~~~~~~v~ 110 (213)
+.-+-.+++.+.+.+...++.|.+.+.|+++.++-+.. + -...+++.+++||.+
T Consensus 17 ~yaV~AfN~~n~e~~~avi~AAee~~sPvIiq~~~~~~~~~g~~~~~~~~~~~A~~~~VPV~l 79 (284)
T PRK09195 17 GYAVPAFNIHNLETMQVVVETAAELHSPVIIAGTPGTFSYAGTEYLLAIVSAAAKQYHHPLAL 79 (284)
T ss_pred CceEEEEEeCCHHHHHHHHHHHHHhCCCEEEEcChhHHhhCCHHHHHHHHHHHHHHCCCCEEE
Confidence 33345788888899999999999999999998755321 1 245566777888865
No 184
>COG1810 Uncharacterized protein conserved in archaea [Function unknown]
Probab=59.69 E-value=1.1e+02 Score=26.67 Aligned_cols=112 Identities=21% Similarity=0.215 Sum_probs=64.9
Q ss_pred chhHHHhhhhcCCCCEEEEEc-CChHHHHHHHHHHHhcCCCEEEEcCC---CCHHHHHHHHHccCCcEE-------EccC
Q 028115 45 DRESVLASVFDKYPNMIVVDY-TVPAAVNGNAELYSKVGVPFVMGTTG---GDRVRLHETIENSNVYAV-------ISPQ 113 (213)
Q Consensus 45 ~~~~~l~~~~~~~~d~VvIDF-S~p~~~~~~~~~~~~~g~~~ViGTTG---~~~~~~~~~~~~~~~~~v-------~a~N 113 (213)
++++.|..+ ..+| ++|=+ -||+.++...+.+.+.+...||=-++ +-.+|+++.+++.++-+. +-||
T Consensus 45 ~P~~~Lp~~--~e~D-i~va~~lHPDl~~~L~e~~~~~~~~alIvp~~~~~g~rkqL~~~~~~~g~e~~~p~p~C~Le~~ 121 (224)
T COG1810 45 EPEDLLPKL--PEAD-IVVAYGLHPDLLLALPEKAAEGGVKALIVPAEPPEGLRKQLKEFCEELGVEFEAPEPFCSLEPN 121 (224)
T ss_pred CHHHhcCCC--CCCC-EEEEeccCccHHHHHHHHHHhCCccEEEEecCCChhHHHHHHHHhhhcceeeecCCccccCCCC
Confidence 344444432 2456 89999 68999999999998888776553332 225678777774432222 2344
Q ss_pred hhHHHHHHHHHHHHHHHhcCCCCCCCcEEEEeccC---CCCCCc-hHHHHHHHHHHHhc
Q 028115 114 MGKQVVAFLAAMEIMAEQFPGAFSGYSLQVLESHQ---AGKLDT-SGTAKAVISCFQKL 168 (213)
Q Consensus 114 ~SlGv~ll~~l~~~aa~~l~~~~~~~dieI~E~HH---~~K~Da-SGTA~~la~~~~~~ 168 (213)
- - --+...+..|+. +...+|+-+--= .-+.+| -|.+.-+|+.+..+
T Consensus 122 ~---~----p~i~~F~e~FG~--P~vevev~~~~i~~V~V~RsaPCGsT~~vAk~l~G~ 171 (224)
T COG1810 122 E---N----PHIDEFAERFGK--PEVEVEVENGKIKDVDVLRSAPCGSTWYVAKRLVGV 171 (224)
T ss_pred C---C----hHHHHHHHHcCC--ceEEEEecCCeEEEEEEEecCCCchHHHHHHHhcCc
Confidence 3 1 122334444542 444555421100 245567 89888888877543
No 185
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=59.47 E-value=80 Score=27.49 Aligned_cols=23 Identities=35% Similarity=0.275 Sum_probs=17.9
Q ss_pred ChHHHHHHHHhCCCeEEEEecCCC
Q 028115 1 MGKAVIKAADAAGLELVPVSFGTE 24 (213)
Q Consensus 1 MG~~i~~~~~~~~~elv~~~~~~~ 24 (213)
||+.+++.+.+.|+++.+ +++.+
T Consensus 13 mG~~~a~~l~~~g~~v~~-~d~~~ 35 (296)
T PRK11559 13 MGKPMSKNLLKAGYSLVV-YDRNP 35 (296)
T ss_pred HHHHHHHHHHHCCCeEEE-EcCCH
Confidence 799999998888998864 56543
No 186
>PF07085 DRTGG: DRTGG domain; InterPro: IPR010766 This presumed domain is about 120 amino acids in length. It is found associated with CBS domains IPR000644 from INTERPRO, as well as the CbiA domain IPR002586 from INTERPRO. The function of this domain is unknown. It is named the DRTGG domain after some of the most conserved residues. This domain may be very distantly related to a pair of CBS domains. There are no significant sequence similarities, but its length and association with CBS domains supports this idea. ; PDB: 3L31_B 3L2B_A 2IOJ_A.
Probab=59.37 E-value=25 Score=26.00 Aligned_cols=66 Identities=11% Similarity=0.089 Sum_probs=40.5
Q ss_pred CchhHHHhhhhcCCCC-EEEEEcCChHHHHHHHHHHHhcCCCEEEEcCCCCH-HHHHHHHHccCCcEEEccChhH
Q 028115 44 SDRESVLASVFDKYPN-MIVVDYTVPAAVNGNAELYSKVGVPFVMGTTGGDR-VRLHETIENSNVYAVISPQMGK 116 (213)
Q Consensus 44 ~~~~~~l~~~~~~~~d-~VvIDFS~p~~~~~~~~~~~~~g~~~ViGTTG~~~-~~~~~~~~~~~~~~v~a~N~Sl 116 (213)
.+.+..+..+ .++ .||+-..++ +.+..|+..+++.||=|-|... +++.++++..++|++.+|-=+.
T Consensus 29 ~~~~~~~~~~---~~~~lvIt~gdR~----di~~~a~~~~i~~iIltg~~~~~~~v~~la~~~~i~vi~t~~dtf 96 (105)
T PF07085_consen 29 MSLSDFLEYL---KPGDLVITPGDRE----DIQLAAIEAGIACIILTGGLEPSEEVLELAKELGIPVISTPYDTF 96 (105)
T ss_dssp S-HHHHHHCH---HTTEEEEEETT-H----HHHHHHCCTTECEEEEETT----HHHHHHHHHHT-EEEE-SS-HH
T ss_pred CCHHHHHhhc---CCCeEEEEeCCcH----HHHHHHHHhCCCEEEEeCCCCCCHHHHHHHHHCCCEEEEECCCHH
Confidence 4455555443 234 344447774 4667888889999999988875 4677888888899999886544
No 187
>PRK06953 short chain dehydrogenase; Provisional
Probab=59.00 E-value=54 Score=26.80 Aligned_cols=69 Identities=16% Similarity=0.188 Sum_probs=44.7
Q ss_pred ChHHHHHHHHhCCCeEEEEecCCCccccccccccCceeEeecCCchhHHHhhhhcCCCCEEEEEcCChHHHHHHHHHHHh
Q 028115 1 MGKAVIKAADAAGLELVPVSFGTEEESGQKVEVCGKEIQVHGLSDRESVLASVFDKYPNMIVVDYTVPAAVNGNAELYSK 80 (213)
Q Consensus 1 MG~~i~~~~~~~~~elv~~~~~~~~~~g~~~~~~~~~v~i~~~~~~~~~l~~~~~~~~d~VvIDFS~p~~~~~~~~~~~~ 80 (213)
+|+.+++.+.++|.+++.. ++.+. ..++ +.. .....+..|+|.++.+...+..+..
T Consensus 13 iG~~la~~L~~~G~~v~~~-~r~~~-------------------~~~~-~~~---~~~~~~~~D~~~~~~v~~~~~~~~~ 68 (222)
T PRK06953 13 IGREFVRQYRADGWRVIAT-ARDAA-------------------ALAA-LQA---LGAEALALDVADPASVAGLAWKLDG 68 (222)
T ss_pred hhHHHHHHHHhCCCEEEEE-ECCHH-------------------HHHH-HHh---ccceEEEecCCCHHHHHHHHHHhcC
Confidence 4888999888888887753 32211 1111 111 1222368899999988887766555
Q ss_pred cCCCEEEEcCCCC
Q 028115 81 VGVPFVMGTTGGD 93 (213)
Q Consensus 81 ~g~~~ViGTTG~~ 93 (213)
.++.+|+-+.|+.
T Consensus 69 ~~~d~vi~~ag~~ 81 (222)
T PRK06953 69 EALDAAVYVAGVY 81 (222)
T ss_pred CCCCEEEECCCcc
Confidence 5688999888864
No 188
>PRK05867 short chain dehydrogenase; Provisional
Probab=58.78 E-value=55 Score=27.30 Aligned_cols=72 Identities=15% Similarity=0.110 Sum_probs=45.0
Q ss_pred ChHHHHHHHHhCCCeEEEEecCCCccccccccccCceeEeecCCchhHHHhhhhcCCCC--EEEEEcCChHHHHHHHHHH
Q 028115 1 MGKAVIKAADAAGLELVPVSFGTEEESGQKVEVCGKEIQVHGLSDRESVLASVFDKYPN--MIVVDYTVPAAVNGNAELY 78 (213)
Q Consensus 1 MG~~i~~~~~~~~~elv~~~~~~~~~~g~~~~~~~~~v~i~~~~~~~~~l~~~~~~~~d--~VvIDFS~p~~~~~~~~~~ 78 (213)
+|+.+++.+.+.|.+++.. ++.. +.+++..+++.....+ .+..|++.++.+.+.++.+
T Consensus 21 IG~~ia~~l~~~G~~V~~~-~r~~-------------------~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~ 80 (253)
T PRK05867 21 IGKRVALAYVEAGAQVAIA-ARHL-------------------DALEKLADEIGTSGGKVVPVCCDVSQHQQVTSMLDQV 80 (253)
T ss_pred HHHHHHHHHHHCCCEEEEE-cCCH-------------------HHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHH
Confidence 4888888888888887643 2221 1112222222111122 2568999999999988877
Q ss_pred Hhc--CCCEEEEcCCC
Q 028115 79 SKV--GVPFVMGTTGG 92 (213)
Q Consensus 79 ~~~--g~~~ViGTTG~ 92 (213)
.+. ++.+++-..|.
T Consensus 81 ~~~~g~id~lv~~ag~ 96 (253)
T PRK05867 81 TAELGGIDIAVCNAGI 96 (253)
T ss_pred HHHhCCCCEEEECCCC
Confidence 664 67888877775
No 189
>PRK09701 D-allose transporter subunit; Provisional
Probab=58.61 E-value=1e+02 Score=26.87 Aligned_cols=41 Identities=12% Similarity=-0.056 Sum_probs=26.2
Q ss_pred HhhhhcCCCCEEEEEcCChHHHHHHHHHHHhcCCCEEEEcC
Q 028115 50 LASVFDKYPNMIVVDYTVPAAVNGNAELYSKVGVPFVMGTT 90 (213)
Q Consensus 50 l~~~~~~~~d~VvIDFS~p~~~~~~~~~~~~~g~~~ViGTT 90 (213)
++.+....+|.++|.=..++...+.+..+.+.|+|+|+-.+
T Consensus 75 i~~l~~~~vDgiIi~~~~~~~~~~~l~~~~~~giPvV~~~~ 115 (311)
T PRK09701 75 FEDLSNKNYKGIAFAPLSSVNLVMPVARAWKKGIYLVNLDE 115 (311)
T ss_pred HHHHHHcCCCEEEEeCCChHHHHHHHHHHHHCCCcEEEeCC
Confidence 44444457895555444455555567777899999986543
No 190
>PRK07680 late competence protein ComER; Validated
Probab=58.44 E-value=1.2e+02 Score=26.15 Aligned_cols=91 Identities=15% Similarity=0.101 Sum_probs=50.2
Q ss_pred ChHHHHHHHHhCCC---eEEEEecCCCccccccccccCceeEeecCCchhHHHhhhhcCCCCEEEEEcCChHHHHHHHHH
Q 028115 1 MGKAVIKAADAAGL---ELVPVSFGTEEESGQKVEVCGKEIQVHGLSDRESVLASVFDKYPNMIVVDYTVPAAVNGNAEL 77 (213)
Q Consensus 1 MG~~i~~~~~~~~~---elv~~~~~~~~~~g~~~~~~~~~v~i~~~~~~~~~l~~~~~~~~d~VvIDFS~p~~~~~~~~~ 77 (213)
||+.+++.+.+.+. +-+.++++.+... +.+.-...++.+. .+.++++ ..+| +||=-..|..+.+.++.
T Consensus 11 mG~ala~~L~~~g~~~~~~v~v~~r~~~~~-~~~~~~~~g~~~~--~~~~~~~-----~~aD-iVilav~p~~~~~vl~~ 81 (273)
T PRK07680 11 MGTILIEAFLESGAVKPSQLTITNRTPAKA-YHIKERYPGIHVA--KTIEEVI-----SQSD-LIFICVKPLDIYPLLQK 81 (273)
T ss_pred HHHHHHHHHHHCCCCCcceEEEECCCHHHH-HHHHHHcCCeEEE--CCHHHHH-----HhCC-EEEEecCHHHHHHHHHH
Confidence 89999998876663 2344555543211 1110000123332 3444433 2578 67777778888887776
Q ss_pred HHh---cCCCEEEEcCCCCHHHHHHH
Q 028115 78 YSK---VGVPFVMGTTGGDRVRLHET 100 (213)
Q Consensus 78 ~~~---~g~~~ViGTTG~~~~~~~~~ 100 (213)
... .+..+|.-+.|.+.++++.+
T Consensus 82 l~~~l~~~~~iis~~ag~~~~~L~~~ 107 (273)
T PRK07680 82 LAPHLTDEHCLVSITSPISVEQLETL 107 (273)
T ss_pred HHhhcCCCCEEEEECCCCCHHHHHHH
Confidence 543 34445555666877666654
No 191
>PRK12935 acetoacetyl-CoA reductase; Provisional
Probab=58.38 E-value=57 Score=26.90 Aligned_cols=73 Identities=18% Similarity=0.165 Sum_probs=44.8
Q ss_pred ChHHHHHHHHhCCCeEEEEecCCCccccccccccCceeEeecCCchhHHHhhhhcCCCC--EEEEEcCChHHHHHHHHHH
Q 028115 1 MGKAVIKAADAAGLELVPVSFGTEEESGQKVEVCGKEIQVHGLSDRESVLASVFDKYPN--MIVVDYTVPAAVNGNAELY 78 (213)
Q Consensus 1 MG~~i~~~~~~~~~elv~~~~~~~~~~g~~~~~~~~~v~i~~~~~~~~~l~~~~~~~~d--~VvIDFS~p~~~~~~~~~~ 78 (213)
+|+.+++.+.++|.+++....+.+. ..++..+++.....+ .+-.|++.++.+.+.++.+
T Consensus 18 iG~~la~~l~~~g~~v~~~~~~~~~-------------------~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~ 78 (247)
T PRK12935 18 IGKAITVALAQEGAKVVINYNSSKE-------------------AAENLVNELGKEGHDVYAVQADVSKVEDANRLVEEA 78 (247)
T ss_pred HHHHHHHHHHHcCCEEEEEcCCcHH-------------------HHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHH
Confidence 4788888888888887743222211 111111222111222 2567999999999888877
Q ss_pred Hhc--CCCEEEEcCCC
Q 028115 79 SKV--GVPFVMGTTGG 92 (213)
Q Consensus 79 ~~~--g~~~ViGTTG~ 92 (213)
.+. .+..|+-.+|+
T Consensus 79 ~~~~~~id~vi~~ag~ 94 (247)
T PRK12935 79 VNHFGKVDILVNNAGI 94 (247)
T ss_pred HHHcCCCCEEEECCCC
Confidence 663 46788888886
No 192
>PRK12743 oxidoreductase; Provisional
Probab=58.20 E-value=72 Score=26.70 Aligned_cols=73 Identities=12% Similarity=0.135 Sum_probs=44.8
Q ss_pred ChHHHHHHHHhCCCeEEEEecCCCccccccccccCceeEeecCCchhHHHhhhhcC--CCCEEEEEcCChHHHHHHHHHH
Q 028115 1 MGKAVIKAADAAGLELVPVSFGTEEESGQKVEVCGKEIQVHGLSDRESVLASVFDK--YPNMIVVDYTVPAAVNGNAELY 78 (213)
Q Consensus 1 MG~~i~~~~~~~~~elv~~~~~~~~~~g~~~~~~~~~v~i~~~~~~~~~l~~~~~~--~~d~VvIDFS~p~~~~~~~~~~ 78 (213)
+|+.+++.+.+.|.+++....+... ..+...+++... ....+-.|++.++.+...++.+
T Consensus 14 iG~~~a~~l~~~G~~V~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~ 74 (256)
T PRK12743 14 IGKACALLLAQQGFDIGITWHSDEE-------------------GAKETAEEVRSHGVRAEIRQLDLSDLPEGAQALDKL 74 (256)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCChH-------------------HHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHH
Confidence 4888998888889888654322211 111111111111 2233468999999999988877
Q ss_pred Hhc--CCCEEEEcCCC
Q 028115 79 SKV--GVPFVMGTTGG 92 (213)
Q Consensus 79 ~~~--g~~~ViGTTG~ 92 (213)
.+. ++..|+-..|+
T Consensus 75 ~~~~~~id~li~~ag~ 90 (256)
T PRK12743 75 IQRLGRIDVLVNNAGA 90 (256)
T ss_pred HHHcCCCCEEEECCCC
Confidence 653 46788888875
No 193
>PLN03096 glyceraldehyde-3-phosphate dehydrogenase A; Provisional
Probab=58.12 E-value=62 Score=30.54 Aligned_cols=122 Identities=14% Similarity=0.131 Sum_probs=71.1
Q ss_pred ChHHHHHHHH-h--CCCeEEEEec--------------CCC-c-------cccccccccCceeEeecCCchhHHHhhhhc
Q 028115 1 MGKAVIKAAD-A--AGLELVPVSF--------------GTE-E-------ESGQKVEVCGKEIQVHGLSDRESVLASVFD 55 (213)
Q Consensus 1 MG~~i~~~~~-~--~~~elv~~~~--------------~~~-~-------~~g~~~~~~~~~v~i~~~~~~~~~l~~~~~ 55 (213)
.||.+.+++. . +.++|++.=+ ... . ..|+.+.+.|..+.+....|+++. ...+
T Consensus 71 IGR~vlr~l~~~~~~~~evvaINd~~~~~~~ayLl~yDS~hG~f~~~v~~~~g~~l~v~gk~I~v~~~~dp~~~--~w~~ 148 (395)
T PLN03096 71 IGRNFLRCWHGRKDSPLDVVAINDTGGVKQASHLLKYDSTLGTFDADVKPVGDDAISVDGKVIKVVSDRNPLNL--PWGE 148 (395)
T ss_pred HHHHHHHHHHhCCCCCeEEEEEcCCCCHHHHHHHHhhcccCCCcCCcEEEecCCEEEECCEEEEEEEcCCcccc--cccc
Confidence 4899999876 3 4688986532 110 0 012233445556777664555542 2222
Q ss_pred CCCCEEEEEcCChHHHHHHHHHHHhcCCCEEEEcC-----------CCCHHHHHHHHHccCCcEEEccChhHHHHHHHHH
Q 028115 56 KYPNMIVVDYTVPAAVNGNAELYSKVGVPFVMGTT-----------GGDRVRLHETIENSNVYAVISPQMGKQVVAFLAA 124 (213)
Q Consensus 56 ~~~d~VvIDFS~p~~~~~~~~~~~~~g~~~ViGTT-----------G~~~~~~~~~~~~~~~~~v~a~N~SlGv~ll~~l 124 (213)
...| ++|+-|-.....+.....++.|...|+=|. |-+.+++. . ...++ +|=|--.|-|--+
T Consensus 149 ~gvD-iVie~TG~f~s~~~a~~hl~aGAkkV~iSap~~~~~ptvV~GVN~~~l~---~--~~~II--SnaSCTTn~LAp~ 220 (395)
T PLN03096 149 LGID-LVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADDYK---H--SDPII--SNASCTTNCLAPF 220 (395)
T ss_pred cCCC-EEEECcchhhhHHHHHHHHHCCCEEEEeCCCCCCCCCeEeCccCHHHhc---c--CCCEE--ECCchHHHHHHHH
Confidence 4678 899999888888888888888876666543 22333332 1 23344 5555556666555
Q ss_pred HHHHHHhc
Q 028115 125 MEIMAEQF 132 (213)
Q Consensus 125 ~~~aa~~l 132 (213)
++.+-+.|
T Consensus 221 lkvL~~~f 228 (395)
T PLN03096 221 VKVLDQKF 228 (395)
T ss_pred HHHHHHhc
Confidence 55555444
No 194
>cd00953 KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolases found in archaea. This subfamily of enzymes is adapted for high thermostability and shows specificity for non-phosphorylated substrates. The enzyme catalyses the reversible aldol cleavage of 2-keto-3-dexoygluconate to pyruvate and glyceraldehyde, the third step of a modified non-phosphorylated Entner-Doudoroff pathway of glucose oxidation. KDG aldolase shows no significant sequence similarity to microbial 2-keto-3-deoxyphosphogluconate (KDPG) aldolases, and the enzyme shows no activity with glyceraldehyde 3-phosphate as substrate. The enzyme is a tetramer and a member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=58.07 E-value=19 Score=31.79 Aligned_cols=23 Identities=35% Similarity=0.511 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHhcCCC--EEEEcCC
Q 028115 69 AAVNGNAELYSKVGVP--FVMGTTG 91 (213)
Q Consensus 69 ~~~~~~~~~~~~~g~~--~ViGTTG 91 (213)
+.+.+++++..+.|+. +|.||||
T Consensus 20 ~~~~~li~~l~~~Gv~Gl~~~GstG 44 (279)
T cd00953 20 EKFKKHCENLISKGIDYVFVAGTTG 44 (279)
T ss_pred HHHHHHHHHHHHcCCcEEEEcccCC
Confidence 4455555555555544 2345555
No 195
>PF00809 Pterin_bind: Pterin binding enzyme This Prosite entry is a subset of the Pfam family; InterPro: IPR000489 The ~250-residue pterin-binding domain has been shown to adopt a (beta/alpha)8 barrel fold, which has the overall shape of a distorted cylinder. It has eight alpha-helices stacked around the outside of an inner cylinder of parallel beta-strands. The pterin ring binds at the bottom of the (beta/alpha;)8 barrel in a polar cup-like region that is relatively solvent exposed and fairly negatively charged. The pterin ring is partially buried within the (beta/alpha)8 barrel. The pterin binding residues are highly conserved and include aspartate and asparagine residues located at the C terminus of the beta-strands of the barrel, which are predicted to form hydrogen bonds with the nitrogen and oxygen atoms of the pterin ring [, , ]. Some proteins known to contain a pterin-binding domain are listed below: Prokaryotic and eukaryotic B12-dependent methionine synthase (MetH) (2.1.1.13 from EC), a large, modular protein that catalyzes the transfer of a methyl group from methyltetrahydrofolate (CH3-H4folate) to Hcy to form methionine, using cobalamin as an intermediate methyl carrier. Prokaryotic and eukaryotic dihydropteroate synthase (DHPS) (2.5.1.15 from EC). It catalyzes the condensation of para-aminobenzoic acid (pABA) with 7,8- dihydropterin-pyrophosphate (DHPPP), eliminating pyrophosphate to form 7,8- dihydropteroate which is subsequently converted to tetrahydrofolate. Moorella thermoacetica 5-methyltetrahydrofolate corrinoid/iron sulphur protein methyltransferase (MeTr). It transfers the N5-methyl group from CH3-H4folate to a cob(I)amide centre in another protein, the corrinoid iron sulphur protein. ; GO: 0042558 pteridine-containing compound metabolic process; PDB: 2VP8_B 2BMB_A 2Y5S_B 2Y5J_A 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B ....
Probab=57.92 E-value=22 Score=30.06 Aligned_cols=51 Identities=12% Similarity=0.120 Sum_probs=40.9
Q ss_pred EEEEEcCChHHHHHHHHHHHhcCCCEEEEcCCCC-HHHHHHHHHccCCcEEEccCh
Q 028115 60 MIVVDYTVPAAVNGNAELYSKVGVPFVMGTTGGD-RVRLHETIENSNVYAVISPQM 114 (213)
Q Consensus 60 ~VvIDFS~p~~~~~~~~~~~~~g~~~ViGTTG~~-~~~~~~~~~~~~~~~v~a~N~ 114 (213)
.+-||-+.|+.+... +++|.++|.=++|+. .+++-.++.+.+.|+|+.++-
T Consensus 74 plSIDT~~~~v~~~a----L~~g~~~ind~~~~~~~~~~~~l~a~~~~~vV~m~~~ 125 (210)
T PF00809_consen 74 PLSIDTFNPEVAEAA----LKAGADIINDISGFEDDPEMLPLAAEYGAPVVLMHSD 125 (210)
T ss_dssp EEEEEESSHHHHHHH----HHHTSSEEEETTTTSSSTTHHHHHHHHTSEEEEESES
T ss_pred EEEEECCCHHHHHHH----HHcCcceEEecccccccchhhhhhhcCCCEEEEEecc
Confidence 389999999987764 455999999999997 667777777788888776554
No 196
>cd06343 PBP1_ABC_ligand_binding_like_8 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=57.81 E-value=1e+02 Score=27.08 Aligned_cols=56 Identities=18% Similarity=0.152 Sum_probs=38.1
Q ss_pred CchhHHHhhhhcCCCCEEEEEcCChHHHHHHHHHHHhcCC-CEEEEcCCCC-HHH-HHHH
Q 028115 44 SDRESVLASVFDKYPNMIVVDYTVPAAVNGNAELYSKVGV-PFVMGTTGGD-RVR-LHET 100 (213)
Q Consensus 44 ~~~~~~l~~~~~~~~d~VvIDFS~p~~~~~~~~~~~~~g~-~~ViGTTG~~-~~~-~~~~ 100 (213)
.|....+.++...+|| +|+=+..+......++.+.+.|. +.++++.++. ... +..+
T Consensus 186 ~d~~~~v~~i~~~~~d-~v~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 244 (362)
T cd06343 186 PDFDSQVAKLKAAGAD-VVVLATTPKFAAQAIRKAAELGWKPTFLLSSVSASVASVLKPA 244 (362)
T ss_pred ccHHHHHHHHHhcCCC-EEEEEcCcHHHHHHHHHHHHcCCCceEEEEecccccHHHHHHh
Confidence 3566666677777899 66667778778889999999986 3455555543 333 4444
No 197
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=57.68 E-value=54 Score=29.20 Aligned_cols=34 Identities=15% Similarity=0.181 Sum_probs=25.4
Q ss_pred CCCEEEEEcCC-hHHHHHHHHHHHhcCCCEEEEcCC
Q 028115 57 YPNMIVVDYTV-PAAVNGNAELYSKVGVPFVMGTTG 91 (213)
Q Consensus 57 ~~d~VvIDFS~-p~~~~~~~~~~~~~g~~~ViGTTG 91 (213)
.+| ++||++. ++.+...++.+...|.=+++|.++
T Consensus 245 g~d-~vid~~g~~~~~~~~~~~~~~~G~iv~~G~~~ 279 (358)
T TIGR03451 245 GAD-VVIDAVGRPETYKQAFYARDLAGTVVLVGVPT 279 (358)
T ss_pred CCC-EEEECCCCHHHHHHHHHHhccCCEEEEECCCC
Confidence 467 8999987 667777777777777777777654
No 198
>PF14226 DIOX_N: non-haem dioxygenase in morphine synthesis N-terminal; PDB: 3OOX_A 1BK0_A 1IPS_B 1QIQ_A 1OC1_A 2Y86_A 2Y60_A 1W03_A 2VE1_A 1QJF_A ....
Probab=57.60 E-value=15 Score=27.23 Aligned_cols=35 Identities=11% Similarity=0.189 Sum_probs=19.1
Q ss_pred EEEcC-----ChHHHHHHHHHHHhcCCCEEEEcCCCCHHHH
Q 028115 62 VVDYT-----VPAAVNGNAELYSKVGVPFVMGTTGGDRVRL 97 (213)
Q Consensus 62 vIDFS-----~p~~~~~~~~~~~~~g~~~ViGTTG~~~~~~ 97 (213)
+|||+ .++.+....++|.+.|.=.|++. |.+.+.+
T Consensus 3 vIDls~~~~~~~~~~~~l~~A~~~~GFf~l~nh-Gi~~~l~ 42 (116)
T PF14226_consen 3 VIDLSPDPADREEVAEQLRDACEEWGFFYLVNH-GIPQELI 42 (116)
T ss_dssp EEEHGGCHHHHHHHHHHHHHHHHHTSEEEEESS-SSSHHHH
T ss_pred eEECCCCCccHHHHHHHHHHHHHhCCEEEEecc-cccchhh
Confidence 57777 33445555555556665555544 5554433
No 199
>PRK06901 aspartate-semialdehyde dehydrogenase; Provisional
Probab=57.57 E-value=1.1e+02 Score=28.14 Aligned_cols=103 Identities=15% Similarity=0.028 Sum_probs=62.8
Q ss_pred hHHHHHHHHhCCCeEEEE--ecCCCccccccccccCceeEeecCCchhHHHhhhhcCCCCEEEEEcCChHHHHHHHHHHH
Q 028115 2 GKAVIKAADAAGLELVPV--SFGTEEESGQKVEVCGKEIQVHGLSDRESVLASVFDKYPNMIVVDYTVPAAVNGNAELYS 79 (213)
Q Consensus 2 G~~i~~~~~~~~~elv~~--~~~~~~~~g~~~~~~~~~v~i~~~~~~~~~l~~~~~~~~d~VvIDFS~p~~~~~~~~~~~ 79 (213)
||.+.+.+.++++.+--. +.......|+.+.+.|..+.+... +. ......| +++ |+..+...+....+.
T Consensus 15 G~~~l~~Leer~fpv~~l~l~~s~~~s~gk~i~f~g~~~~V~~l---~~----~~f~~vD-ia~-fag~~~s~~~ap~a~ 85 (322)
T PRK06901 15 SEKLLEALEQSDLEIEQISIVEIEPFGEEQGIRFNNKAVEQIAP---EE----VEWADFN-YVF-FAGKMAQAEHLAQAA 85 (322)
T ss_pred HHHHHHHHHhcCCchhheeecccccccCCCEEEECCEEEEEEEC---Cc----cCcccCC-EEE-EcCHHHHHHHHHHHH
Confidence 899999888888754311 111113456666666666666432 11 1123577 444 388888999999999
Q ss_pred hcCCCEEEEcCCC-------------CHHHHHHHHHccCCcEEEccChhH
Q 028115 80 KVGVPFVMGTTGG-------------DRVRLHETIENSNVYAVISPQMGK 116 (213)
Q Consensus 80 ~~g~~~ViGTTG~-------------~~~~~~~~~~~~~~~~v~a~N~Sl 116 (213)
+.|..+|-=+.-| +.+.++.+ ....++-.||=|-
T Consensus 86 ~aG~~VIDnSsa~Rmd~dVPLVVPEVN~e~l~~~---~~~~IIanPNCsT 132 (322)
T PRK06901 86 EAGCIVIDLYGICAALANVPVVVPSVNDEQLAEL---RQRNIVSLPDPQV 132 (322)
T ss_pred HCCCEEEECChHhhCCCCCCeecccCCHHHHhcC---cCCCEEECCcHHH
Confidence 9988777766665 23333322 2345888999664
No 200
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=57.48 E-value=17 Score=27.97 Aligned_cols=32 Identities=28% Similarity=0.288 Sum_probs=16.6
Q ss_pred CCCEEEEEcCC-hHHHHHHHHHHHhcCCCEEEEc
Q 028115 57 YPNMIVVDYTV-PAAVNGNAELYSKVGVPFVMGT 89 (213)
Q Consensus 57 ~~d~VvIDFS~-p~~~~~~~~~~~~~g~~~ViGT 89 (213)
.+| ++||.+. ++.-...-++|.++++|++.+.
T Consensus 92 ~~d-~vi~~~d~~~~~~~l~~~~~~~~~p~i~~~ 124 (135)
T PF00899_consen 92 DYD-IVIDCVDSLAARLLLNEICREYGIPFIDAG 124 (135)
T ss_dssp TSS-EEEEESSSHHHHHHHHHHHHHTT-EEEEEE
T ss_pred CCC-EEEEecCCHHHHHHHHHHHHHcCCCEEEEE
Confidence 455 5666553 3444445556666666665544
No 201
>PF13561 adh_short_C2: Enoyl-(Acyl carrier protein) reductase; PDB: 2UV8_B 3HMJ_A 2VKZ_C 1O5I_A 2P91_C 2OP0_A 2OL4_B 1NHW_A 1NNU_B 2O2Y_B ....
Probab=57.45 E-value=13 Score=30.98 Aligned_cols=72 Identities=17% Similarity=0.267 Sum_probs=46.3
Q ss_pred ChHHHHHHHHhCCCeEEEEecCCCccccccccccCceeEeecCCchhHHHhhhhcCC-CCEEEEEcCChHHHHHHHHHHH
Q 028115 1 MGKAVIKAADAAGLELVPVSFGTEEESGQKVEVCGKEIQVHGLSDRESVLASVFDKY-PNMIVVDYTVPAAVNGNAELYS 79 (213)
Q Consensus 1 MG~~i~~~~~~~~~elv~~~~~~~~~~g~~~~~~~~~v~i~~~~~~~~~l~~~~~~~-~d~VvIDFS~p~~~~~~~~~~~ 79 (213)
+|+.|++.+.+.|..++.. ++..+ ++++.++++.+.. .+++..|++.++.+...++.+.
T Consensus 8 iG~aia~~l~~~Ga~V~~~-~~~~~-------------------~~~~~~~~l~~~~~~~~~~~D~~~~~~v~~~~~~~~ 67 (241)
T PF13561_consen 8 IGRAIARALAEEGANVILT-DRNEE-------------------KLADALEELAKEYGAEVIQCDLSDEESVEALFDEAV 67 (241)
T ss_dssp HHHHHHHHHHHTTEEEEEE-ESSHH-------------------HHHHHHHHHHHHTTSEEEESCTTSHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHCCCEEEEE-eCChH-------------------HHHHHHHHHHHHcCCceEeecCcchHHHHHHHHHHH
Confidence 5899999999999988743 22221 1111122222222 2357899999999999999988
Q ss_pred hc---CCCEEEEcCCC
Q 028115 80 KV---GVPFVMGTTGG 92 (213)
Q Consensus 80 ~~---g~~~ViGTTG~ 92 (213)
+. ++.++|-..|+
T Consensus 68 ~~~~g~iD~lV~~a~~ 83 (241)
T PF13561_consen 68 ERFGGRIDILVNNAGI 83 (241)
T ss_dssp HHHCSSESEEEEEEES
T ss_pred hhcCCCeEEEEecccc
Confidence 87 36666654443
No 202
>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional
Probab=57.40 E-value=28 Score=35.68 Aligned_cols=66 Identities=17% Similarity=0.180 Sum_probs=52.3
Q ss_pred CCEEEEEcCChHHHHHHHHHHHhcCCCEEEEcCCCC------HHHHHHHHHccCCcEEEccChhHHHHHHHHH
Q 028115 58 PNMIVVDYTVPAAVNGNAELYSKVGVPFVMGTTGGD------RVRLHETIENSNVYAVISPQMGKQVVAFLAA 124 (213)
Q Consensus 58 ~d~VvIDFS~p~~~~~~~~~~~~~g~~~ViGTTG~~------~~~~~~~~~~~~~~~v~a~N~SlGv~ll~~l 124 (213)
.+ |+||.|.-+....++..++++|+.+|..--+.- -.++.+++++.++.+.|.++..=|.-++.-+
T Consensus 548 ~~-vvvd~t~~~~~~~~~~~al~~g~~VVtaNK~~~a~~~~~~~el~~~a~~~~~~~~yeatV~~giPii~~l 619 (819)
T PRK09436 548 NP-VIVDCTSSQAVADQYADFLAAGFHVVTPNKKANTSSYAYYHQLREAARKSRRKFLYETNVGAGLPVIETL 619 (819)
T ss_pred CC-EEEECCCChHHHHHHHHHHHcCCEEEcCCchhccCCHHHHHHHHHHHHHcCCeEEEeeeeccccchHHHH
Confidence 35 999999988888889999999999998866632 2467777777778889988888777666544
No 203
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=57.12 E-value=18 Score=31.44 Aligned_cols=12 Identities=25% Similarity=0.540 Sum_probs=6.2
Q ss_pred CCCEEEEcCCCC
Q 028115 82 GVPFVMGTTGGD 93 (213)
Q Consensus 82 g~~~ViGTTG~~ 93 (213)
++|+++|+++.+
T Consensus 66 ~~~vi~gv~~~~ 77 (281)
T cd00408 66 RVPVIAGVGANS 77 (281)
T ss_pred CCeEEEecCCcc
Confidence 455555555544
No 204
>PRK07403 glyceraldehyde-3-phosphate dehydrogenase; Reviewed
Probab=56.99 E-value=44 Score=30.83 Aligned_cols=86 Identities=16% Similarity=0.160 Sum_probs=53.3
Q ss_pred ChHHHHHHHH-h--CCCeEEEEecCCC--------------ccc-------cccccccCceeEeecCCchhHHHhhhhcC
Q 028115 1 MGKAVIKAAD-A--AGLELVPVSFGTE--------------EES-------GQKVEVCGKEIQVHGLSDRESVLASVFDK 56 (213)
Q Consensus 1 MG~~i~~~~~-~--~~~elv~~~~~~~--------------~~~-------g~~~~~~~~~v~i~~~~~~~~~l~~~~~~ 56 (213)
+||.+.+++. . .++++|+.-+... +.. |..+.+.|..+.+....|+++. ...+.
T Consensus 12 IGR~~~R~~~~~~~~~~~vvaind~~~~~~~ayll~yDS~hg~~~~~v~~~~~~l~v~g~~I~v~~~~dp~~~--~W~~~ 89 (337)
T PRK07403 12 IGRNFLRCWLGRENSQLELVAINDTSDPRTNAHLLKYDSMLGKLNADISADENSITVNGKTIKCVSDRNPLNL--PWKEW 89 (337)
T ss_pred HHHHHHHHHHhccCCCeEEEEecCCCCHHHHHHHHhhccCCCCCCCcEEEcCCEEEECCEEEEEEEcCCcccC--Chhhc
Confidence 4899999876 4 4799998755110 001 1112234455666543344442 12223
Q ss_pred CCCEEEEEcCChHHHHHHHHHHHhcCCCEEEEc
Q 028115 57 YPNMIVVDYTVPAAVNGNAELYSKVGVPFVMGT 89 (213)
Q Consensus 57 ~~d~VvIDFS~p~~~~~~~~~~~~~g~~~ViGT 89 (213)
..| ++++.|-.....+.....++.|...|+=+
T Consensus 90 gvD-iV~e~tG~f~s~~~a~~hl~aGak~V~iS 121 (337)
T PRK07403 90 GID-LIIESTGVFVTKEGASKHIQAGAKKVLIT 121 (337)
T ss_pred CCC-EEEeccchhhhHHHHHHHhhCCcEEEEeC
Confidence 678 89998888888888888888887766655
No 205
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=56.95 E-value=91 Score=26.61 Aligned_cols=91 Identities=18% Similarity=0.149 Sum_probs=53.5
Q ss_pred ChHHHHHHHHhCCC--eEEEEecCCCccccccccccCceeEeecCCchhHHHhhhhcCCCCEEEEEcCChHHHHHHHHHH
Q 028115 1 MGKAVIKAADAAGL--ELVPVSFGTEEESGQKVEVCGKEIQVHGLSDRESVLASVFDKYPNMIVVDYTVPAAVNGNAELY 78 (213)
Q Consensus 1 MG~~i~~~~~~~~~--elv~~~~~~~~~~g~~~~~~~~~v~i~~~~~~~~~l~~~~~~~~d~VvIDFS~p~~~~~~~~~~ 78 (213)
||+.+++.+.+.+. .-+.++++.++.. +.+. ...++.+. .+.++.+ ..+| +||=-+.|..+.+.++.+
T Consensus 13 mG~~la~~l~~~g~~~~~v~v~~r~~~~~-~~~~-~~~g~~~~--~~~~~~~-----~~ad-vVil~v~~~~~~~v~~~l 82 (267)
T PRK11880 13 MASAIIGGLLASGVPAKDIIVSDPSPEKR-AALA-EEYGVRAA--TDNQEAA-----QEAD-VVVLAVKPQVMEEVLSEL 82 (267)
T ss_pred HHHHHHHHHHhCCCCcceEEEEcCCHHHH-HHHH-HhcCCeec--CChHHHH-----hcCC-EEEEEcCHHHHHHHHHHH
Confidence 78889988875551 2334455543211 1110 00123332 3444433 2578 677777888888888877
Q ss_pred Hhc-CCCEEEEcCCCCHHHHHHHH
Q 028115 79 SKV-GVPFVMGTTGGDRVRLHETI 101 (213)
Q Consensus 79 ~~~-g~~~ViGTTG~~~~~~~~~~ 101 (213)
..+ +..+|.-+.|.+.++++.+.
T Consensus 83 ~~~~~~~vvs~~~gi~~~~l~~~~ 106 (267)
T PRK11880 83 KGQLDKLVVSIAAGVTLARLERLL 106 (267)
T ss_pred HhhcCCEEEEecCCCCHHHHHHhc
Confidence 654 45678888888877777654
No 206
>cd01017 AdcA Metal binding protein AcdA. These proteins have been shown to function in the ABC uptake of Zn2+ and Mn2+ and in competence for genetic transformation and adhesion. The AcdA proteins belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and they bind their ligand in the cleft between these domains. In addition, many of these proteins have a low complexity region containing metal binding histidine-rich motif (repetitive HDH sequence).
Probab=56.93 E-value=62 Score=28.29 Aligned_cols=8 Identities=13% Similarity=0.185 Sum_probs=3.8
Q ss_pred HHhcCCCE
Q 028115 78 YSKVGVPF 85 (213)
Q Consensus 78 ~~~~g~~~ 85 (213)
+..+|+..
T Consensus 185 ~~~~gl~~ 192 (282)
T cd01017 185 ARRYGLKQ 192 (282)
T ss_pred HHHCCCeE
Confidence 34455553
No 207
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=56.86 E-value=66 Score=26.25 Aligned_cols=74 Identities=15% Similarity=0.189 Sum_probs=45.1
Q ss_pred ChHHHHHHHHhCCCeEEEEecCCCccccccccccCceeEeecCCchhHHHhhhhcC--CCCEEEEEcCChHHHHHHHHHH
Q 028115 1 MGKAVIKAADAAGLELVPVSFGTEEESGQKVEVCGKEIQVHGLSDRESVLASVFDK--YPNMIVVDYTVPAAVNGNAELY 78 (213)
Q Consensus 1 MG~~i~~~~~~~~~elv~~~~~~~~~~g~~~~~~~~~v~i~~~~~~~~~l~~~~~~--~~d~VvIDFS~p~~~~~~~~~~ 78 (213)
+|+.+++...+.|++++..+.+.+. ..++....+... ....+-.|++.++.+...++..
T Consensus 17 iG~~la~~l~~~g~~v~~~~~r~~~-------------------~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 77 (247)
T PRK05565 17 IGRAIAELLAKEGAKVVIAYDINEE-------------------AAQELLEEIKEEGGDAIAVKADVSSEEDVENLVEQI 77 (247)
T ss_pred HHHHHHHHHHHCCCEEEEEcCCCHH-------------------HHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHH
Confidence 4788888877778887754343321 111111111111 1233567999999998888776
Q ss_pred Hhc--CCCEEEEcCCCC
Q 028115 79 SKV--GVPFVMGTTGGD 93 (213)
Q Consensus 79 ~~~--g~~~ViGTTG~~ 93 (213)
.+. ++..|+-..|..
T Consensus 78 ~~~~~~id~vi~~ag~~ 94 (247)
T PRK05565 78 VEKFGKIDILVNNAGIS 94 (247)
T ss_pred HHHhCCCCEEEECCCcC
Confidence 653 688999888753
No 208
>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=56.61 E-value=93 Score=25.24 Aligned_cols=73 Identities=18% Similarity=0.203 Sum_probs=43.2
Q ss_pred ChHHHHHHHHhCCCeEEEEecCCCccccccccccCceeEeecCCchhHHHhhhhcCCCC--EEEEEcCChHHHHHHHHHH
Q 028115 1 MGKAVIKAADAAGLELVPVSFGTEEESGQKVEVCGKEIQVHGLSDRESVLASVFDKYPN--MIVVDYTVPAAVNGNAELY 78 (213)
Q Consensus 1 MG~~i~~~~~~~~~elv~~~~~~~~~~g~~~~~~~~~v~i~~~~~~~~~l~~~~~~~~d--~VvIDFS~p~~~~~~~~~~ 78 (213)
+|+.+++.+.+.|.+++....+..+ ..+...+.+...... .+-.|++.++.+...++.+
T Consensus 17 iG~~l~~~l~~~G~~v~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~ 77 (248)
T PRK05557 17 IGRAIAERLAAQGANVVINYASSEA-------------------GAEALVAEIGALGGKALAVQGDVSDAESVERAVDEA 77 (248)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCchh-------------------HHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHH
Confidence 4788888888778887544322110 001111111111222 2345999999999988877
Q ss_pred Hhc--CCCEEEEcCCC
Q 028115 79 SKV--GVPFVMGTTGG 92 (213)
Q Consensus 79 ~~~--g~~~ViGTTG~ 92 (213)
.+. ++..|+-..|.
T Consensus 78 ~~~~~~id~vi~~ag~ 93 (248)
T PRK05557 78 KAEFGGVDILVNNAGI 93 (248)
T ss_pred HHHcCCCCEEEECCCc
Confidence 653 67888888875
No 209
>PLN02417 dihydrodipicolinate synthase
Probab=56.53 E-value=45 Score=29.34 Aligned_cols=32 Identities=22% Similarity=0.106 Sum_probs=21.3
Q ss_pred hHHHHHHHHHHHhcCCC--EEEEcCC----CCHHHHHH
Q 028115 68 PAAVNGNAELYSKVGVP--FVMGTTG----GDRVRLHE 99 (213)
Q Consensus 68 p~~~~~~~~~~~~~g~~--~ViGTTG----~~~~~~~~ 99 (213)
.+++.++++++++.|+. +|.|||| ++.+|..+
T Consensus 21 ~~~~~~~i~~l~~~Gv~Gi~~~GstGE~~~ls~~Er~~ 58 (280)
T PLN02417 21 LEAYDSLVNMQIENGAEGLIVGGTTGEGQLMSWDEHIM 58 (280)
T ss_pred HHHHHHHHHHHHHcCCCEEEECccCcchhhCCHHHHHH
Confidence 35677788888888877 4468888 34544433
No 210
>cd06310 PBP1_ABC_sugar_binding_like_2 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=56.53 E-value=69 Score=26.59 Aligned_cols=39 Identities=21% Similarity=0.271 Sum_probs=26.0
Q ss_pred HhhhhcCCCCEEEEEcCChHHHHHHHHHHHhcCCCEEEE
Q 028115 50 LASVFDKYPNMIVVDYTVPAAVNGNAELYSKVGVPFVMG 88 (213)
Q Consensus 50 l~~~~~~~~d~VvIDFS~p~~~~~~~~~~~~~g~~~ViG 88 (213)
+..+....+|.|+|--+.++...+.++.+.+.++|+|.=
T Consensus 50 i~~l~~~~vdgvii~~~~~~~~~~~l~~~~~~~ipvV~~ 88 (273)
T cd06310 50 LENAIARGPDAILLAPTDAKALVPPLKEAKDAGIPVVLI 88 (273)
T ss_pred HHHHHHhCCCEEEEcCCChhhhHHHHHHHHHCCCCEEEe
Confidence 333334568855554444555577888889999999864
No 211
>PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=56.41 E-value=89 Score=25.82 Aligned_cols=73 Identities=12% Similarity=0.120 Sum_probs=46.0
Q ss_pred ChHHHHHHHHhCCCeEEEEecCCCccccccccccCceeEeecCCchhHHHhhhhc--CCCCEEEEEcCChHHHHHHHHHH
Q 028115 1 MGKAVIKAADAAGLELVPVSFGTEEESGQKVEVCGKEIQVHGLSDRESVLASVFD--KYPNMIVVDYTVPAAVNGNAELY 78 (213)
Q Consensus 1 MG~~i~~~~~~~~~elv~~~~~~~~~~g~~~~~~~~~v~i~~~~~~~~~l~~~~~--~~~d~VvIDFS~p~~~~~~~~~~ 78 (213)
+|+.+++.+.++|.+++.. ++... ...++..+.+.. .....+-.|++.++.+...++.+
T Consensus 14 iG~~la~~L~~~g~~vi~~-~r~~~------------------~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 74 (256)
T PRK12745 14 IGLGIARALAAAGFDLAIN-DRPDD------------------EELAATQQELRALGVEVIFFPADVADLSAHEAMLDAA 74 (256)
T ss_pred HHHHHHHHHHHCCCEEEEE-ecCch------------------hHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHH
Confidence 4888999888888888754 32210 011111111111 12233578999999999999888
Q ss_pred Hhc--CCCEEEEcCCC
Q 028115 79 SKV--GVPFVMGTTGG 92 (213)
Q Consensus 79 ~~~--g~~~ViGTTG~ 92 (213)
.+. ++..|+-..|+
T Consensus 75 ~~~~~~id~vi~~ag~ 90 (256)
T PRK12745 75 QAAWGRIDCLVNNAGV 90 (256)
T ss_pred HHhcCCCCEEEECCcc
Confidence 764 57888888885
No 212
>PF06074 DUF935: Protein of unknown function (DUF935); InterPro: IPR009279 This entry is represented by Bacteriophage Mu, Gp29. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several bacterial proteins of unknown function as well as the Bacteriophage Mu Gp29 protein Q9T1W5 from SWISSPROT.
Probab=56.32 E-value=19 Score=34.61 Aligned_cols=32 Identities=19% Similarity=0.277 Sum_probs=24.3
Q ss_pred HHHHHHHHHHhcCCCEEEEcCCC--CHHHHHHHH
Q 028115 70 AVNGNAELYSKVGVPFVMGTTGG--DRVRLHETI 101 (213)
Q Consensus 70 ~~~~~~~~~~~~g~~~ViGTTG~--~~~~~~~~~ 101 (213)
.+...+.+|-++|+|+++|+++- ++++.+.|.
T Consensus 222 ~~~~w~~f~E~yG~P~~vgky~~~a~~~e~~~L~ 255 (516)
T PF06074_consen 222 GLKDWAEFLEKYGMPIRVGKYPPGASDEEKDALL 255 (516)
T ss_pred HHHHHHHHHHHcCCCeEEEecCCCCCHHHHHHHH
Confidence 35567889999999999999987 455555543
No 213
>PRK07478 short chain dehydrogenase; Provisional
Probab=56.31 E-value=75 Score=26.44 Aligned_cols=72 Identities=15% Similarity=0.183 Sum_probs=44.6
Q ss_pred ChHHHHHHHHhCCCeEEEEecCCCccccccccccCceeEeecCCchhHHHhhhhcCCCC--EEEEEcCChHHHHHHHHHH
Q 028115 1 MGKAVIKAADAAGLELVPVSFGTEEESGQKVEVCGKEIQVHGLSDRESVLASVFDKYPN--MIVVDYTVPAAVNGNAELY 78 (213)
Q Consensus 1 MG~~i~~~~~~~~~elv~~~~~~~~~~g~~~~~~~~~v~i~~~~~~~~~l~~~~~~~~d--~VvIDFS~p~~~~~~~~~~ 78 (213)
+|+.+++.+.+.|.+++.. ++.+ +++++..+++.....+ .+..|++.++.+...++..
T Consensus 18 iG~~ia~~l~~~G~~v~~~-~r~~-------------------~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 77 (254)
T PRK07478 18 IGRAAAKLFAREGAKVVVG-ARRQ-------------------AELDQLVAEIRAEGGEAVALAGDVRDEAYAKALVALA 77 (254)
T ss_pred HHHHHHHHHHHCCCEEEEE-eCCH-------------------HHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHH
Confidence 4788888888888887653 3222 1122222222111222 2457999999999988887
Q ss_pred Hhc--CCCEEEEcCCC
Q 028115 79 SKV--GVPFVMGTTGG 92 (213)
Q Consensus 79 ~~~--g~~~ViGTTG~ 92 (213)
.+. ++..||-..|.
T Consensus 78 ~~~~~~id~li~~ag~ 93 (254)
T PRK07478 78 VERFGGLDIAFNNAGT 93 (254)
T ss_pred HHhcCCCCEEEECCCC
Confidence 664 67788877774
No 214
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=56.12 E-value=1.8e+02 Score=27.30 Aligned_cols=21 Identities=14% Similarity=0.002 Sum_probs=15.8
Q ss_pred hHHHHHHHHhCCCeEEEEecCC
Q 028115 2 GKAVIKAADAAGLELVPVSFGT 23 (213)
Q Consensus 2 G~~i~~~~~~~~~elv~~~~~~ 23 (213)
|+.+++.+.+.|+++.+ .|..
T Consensus 26 G~a~a~~L~~~G~~V~~-~D~~ 46 (458)
T PRK01710 26 NIPLIKFLVKLGAKVTA-FDKK 46 (458)
T ss_pred HHHHHHHHHHCCCEEEE-ECCC
Confidence 67888888899998765 5643
No 215
>cd06388 PBP1_iGluR_AMPA_GluR4 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR4 subunit of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR4 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs).
Probab=56.04 E-value=62 Score=29.48 Aligned_cols=56 Identities=14% Similarity=0.173 Sum_probs=42.3
Q ss_pred CchhHHHhhhhcCCCCEEEEEcCChHHHHHHHHHHHhcCCCE-----EEEcCCCCHHHHHHH
Q 028115 44 SDRESVLASVFDKYPNMIVVDYTVPAAVNGNAELYSKVGVPF-----VMGTTGGDRVRLHET 100 (213)
Q Consensus 44 ~~~~~~l~~~~~~~~d~VvIDFS~p~~~~~~~~~~~~~g~~~-----ViGTTG~~~~~~~~~ 100 (213)
.|....|.++...++|.|++|- +|+.+...++.+.+.|+.. ++|+-||+..++..+
T Consensus 165 ~d~~~~L~~ik~~~~~~iil~~-~~~~~~~il~qa~~~gm~~~~y~~il~~~~~~~~~l~~~ 225 (371)
T cd06388 165 ASYRRLLEDLDRRQEKKFVIDC-EIERLQNILEQIVSVGKHVKGYHYIIANLGFKDISLERF 225 (371)
T ss_pred HHHHHHHHHhcccccEEEEEEC-CHHHHHHHHHHHHhcCccccceEEEEccCccccccHHHH
Confidence 3677778888777788445554 6677889999999999864 888889887666554
No 216
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=55.96 E-value=83 Score=23.47 Aligned_cols=44 Identities=11% Similarity=0.138 Sum_probs=26.0
Q ss_pred hhhhcCCCCEEEEEcCCh---HHHHHHHHHHHhc---CCCEEEEcCCCCH
Q 028115 51 ASVFDKYPNMIVVDYTVP---AAVNGNAELYSKV---GVPFVMGTTGGDR 94 (213)
Q Consensus 51 ~~~~~~~~d~VvIDFS~p---~~~~~~~~~~~~~---g~~~ViGTTG~~~ 94 (213)
+.+.+.+||+|.|=+|.. ..+.+.++.+.+. ++++++|=..++.
T Consensus 44 ~~~~~~~pdvV~iS~~~~~~~~~~~~~i~~l~~~~~~~~~i~vGG~~~~~ 93 (119)
T cd02067 44 EAAKEEDADAIGLSGLLTTHMTLMKEVIEELKEAGLDDIPVLVGGAIVTR 93 (119)
T ss_pred HHHHHcCCCEEEEeccccccHHHHHHHHHHHHHcCCCCCeEEEECCCCCh
Confidence 333446888666665533 3345555555554 4667887777765
No 217
>CHL00194 ycf39 Ycf39; Provisional
Probab=55.96 E-value=56 Score=28.65 Aligned_cols=82 Identities=15% Similarity=0.151 Sum_probs=42.8
Q ss_pred ChHHHHHHHHhCCCeEEEEecCCCccccccccccCceeEeecCCchhHHHhhhhcCCCCEEEEEcCCh------------
Q 028115 1 MGKAVIKAADAAGLELVPVSFGTEEESGQKVEVCGKEIQVHGLSDRESVLASVFDKYPNMIVVDYTVP------------ 68 (213)
Q Consensus 1 MG~~i~~~~~~~~~elv~~~~~~~~~~g~~~~~~~~~v~i~~~~~~~~~l~~~~~~~~d~VvIDFS~p------------ 68 (213)
.|+.+++.+.++|+++.+..-. +.... .....+..+..-+..|.+.....+ ..+| +||.....
T Consensus 12 iG~~lv~~Ll~~g~~V~~l~R~-~~~~~-~l~~~~v~~v~~Dl~d~~~l~~al--~g~d-~Vi~~~~~~~~~~~~~~~~~ 86 (317)
T CHL00194 12 LGRQIVRQALDEGYQVRCLVRN-LRKAS-FLKEWGAELVYGDLSLPETLPPSF--KGVT-AIIDASTSRPSDLYNAKQID 86 (317)
T ss_pred HHHHHHHHHHHCCCeEEEEEcC-hHHhh-hHhhcCCEEEECCCCCHHHHHHHH--CCCC-EEEECCCCCCCCccchhhhh
Confidence 3899999988889998875432 21100 000001111111112333322222 3578 78886542
Q ss_pred -HHHHHHHHHHHhcCCCEEE
Q 028115 69 -AAVNGNAELYSKVGVPFVM 87 (213)
Q Consensus 69 -~~~~~~~~~~~~~g~~~Vi 87 (213)
......+++|.+.|+.-+|
T Consensus 87 ~~~~~~l~~aa~~~gvkr~I 106 (317)
T CHL00194 87 WDGKLALIEAAKAAKIKRFI 106 (317)
T ss_pred HHHHHHHHHHHHHcCCCEEE
Confidence 2345678888899986444
No 218
>cd06352 PBP1_NPR_GC_like Ligand-binding domain of membrane guanylyl-cyclase receptors. Ligand-binding domain of membrane guanylyl-cyclase receptors. Membrane guanylyl cyclases (GC) have a single membrane-spanning region and are activated by endogenous and exogenous peptides. This family can be divided into three major subfamilies: the natriuretic peptide receptors (NPRs), sensory organ-specific membrane GCs, and the enterotoxin/guanylin receptors. The binding of peptide ligands to the receptor results in the activation of the cytosolic catalytic domain. Three types of NPRs have been cloned from mammalian tissues: NPR-A/GC-A, NPR-B/ GC-B, and NPR-C. In addition, two of the GCs, GC-D and GC-G, appear to be pseudogenes in humans. Atrial natriuretic peptide (ANP) and brain natriuretic peptide (BNP) are produced in the heart, and both bind to the NPR-A. NPR-C, also termed the clearance receptor, binds each of the natriuretic peptides and can alter circulating levels of these peptides. The l
Probab=55.93 E-value=80 Score=28.12 Aligned_cols=48 Identities=10% Similarity=0.023 Sum_probs=36.1
Q ss_pred CchhHHHhhhhcCCCCEEEEEcCChHHHHHHHHHHHhcCC----CEEEEcCCCC
Q 028115 44 SDRESVLASVFDKYPNMIVVDYTVPAAVNGNAELYSKVGV----PFVMGTTGGD 93 (213)
Q Consensus 44 ~~~~~~l~~~~~~~~d~VvIDFS~p~~~~~~~~~~~~~g~----~~ViGTTG~~ 93 (213)
.|+...+.++.... | |+|.+..++.+...++.+.+.|+ .+++++.++.
T Consensus 182 ~d~~~~l~~i~~~~-~-vii~~~~~~~~~~~l~q~~~~g~~~~~~~~i~~~~~~ 233 (389)
T cd06352 182 EDLLEILQDIKRRS-R-IIIMCGSSEDVRELLLAAHDLGLTSGDYVFILIDLFN 233 (389)
T ss_pred hhHHHHHHHhhhcc-e-EEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEEehhc
Confidence 45666677665544 6 88999999999999999999987 4667765554
No 219
>cd06333 PBP1_ABC-type_HAAT_like Type I periplasmic binding component of ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in uptake of amino acids. This subgroup includes the type I periplasmic binding component of ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in uptake of amino acids. Members of this subgroup are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine-binding protein (LIVBP); their ligand specificity has not been determined experimentally, however.
Probab=55.83 E-value=1.3e+02 Score=25.73 Aligned_cols=52 Identities=13% Similarity=0.079 Sum_probs=32.3
Q ss_pred chhHHHhhhhcCCCCEEEEEcCChHHHHHHHHHHHhcCCC-EEEEcCCCCHHHH
Q 028115 45 DRESVLASVFDKYPNMIVVDYTVPAAVNGNAELYSKVGVP-FVMGTTGGDRVRL 97 (213)
Q Consensus 45 ~~~~~l~~~~~~~~d~VvIDFS~p~~~~~~~~~~~~~g~~-~ViGTTG~~~~~~ 97 (213)
+....+.++....|| +|+=.+.+......++.+.+.|+. .++|+.|+....+
T Consensus 176 d~~~~~~~l~~~~pd-aIi~~~~~~~~~~~~~~l~~~g~~~p~~~~~~~~~~~~ 228 (312)
T cd06333 176 SVTAQLLKIRAARPD-AVLIWGSGTPAALPAKNLRERGYKGPIYQTHGVASPDF 228 (312)
T ss_pred CHHHHHHHHHhCCCC-EEEEecCCcHHHHHHHHHHHcCCCCCEEeecCcCcHHH
Confidence 344444444445688 677676666566688888887765 3666767665443
No 220
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=55.81 E-value=63 Score=28.84 Aligned_cols=54 Identities=7% Similarity=0.039 Sum_probs=38.2
Q ss_pred CCCEEEEEcCChHHHHHHHHHHHhcCCCEEEEcCCCCH---------HHHHHHHHccCCcEEE
Q 028115 57 YPNMIVVDYTVPAAVNGNAELYSKVGVPFVMGTTGGDR---------VRLHETIENSNVYAVI 110 (213)
Q Consensus 57 ~~d~VvIDFS~p~~~~~~~~~~~~~g~~~ViGTTG~~~---------~~~~~~~~~~~~~~v~ 110 (213)
+.-+-.+++.+.+.+...++.|.+.+.|+++.++-... .-+..+++.+++||.+
T Consensus 17 ~yaV~Afn~~n~e~~~avi~aAe~~~~Pvii~~~~~~~~~~~~~~~~~~~~~~a~~~~vpv~l 79 (281)
T PRK06806 17 NYGVGAFSVANMEMVMGAIKAAEELNSPIILQIAEVRLNHSPLHLIGPLMVAAAKQAKVPVAV 79 (281)
T ss_pred CceEEEEEeCCHHHHHHHHHHHHHhCCCEEEEcCcchhccCChHHHHHHHHHHHHHCCCCEEE
Confidence 33345788888888888899998888998888866431 1234456666788765
No 221
>PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional
Probab=55.78 E-value=68 Score=27.98 Aligned_cols=75 Identities=23% Similarity=0.245 Sum_probs=42.4
Q ss_pred ChHHHHHHHHhCCCeEEEEecCCCccccccccccCceeEeecCCchhHHHhhhhcCCCCEEEEEcCC----------hH-
Q 028115 1 MGKAVIKAADAAGLELVPVSFGTEEESGQKVEVCGKEIQVHGLSDRESVLASVFDKYPNMIVVDYTV----------PA- 69 (213)
Q Consensus 1 MG~~i~~~~~~~~~elv~~~~~~~~~~g~~~~~~~~~v~i~~~~~~~~~l~~~~~~~~d~VvIDFS~----------p~- 69 (213)
.|+.+++.+.+.| ++++ +++..... ...+ .|.+.+.+.+...+|| +||.+.. |+
T Consensus 12 iGs~l~~~L~~~g-~V~~-~~~~~~~~---------~~Dl---~d~~~~~~~~~~~~~D-~Vih~Aa~~~~~~~~~~~~~ 76 (299)
T PRK09987 12 VGWELQRALAPLG-NLIA-LDVHSTDY---------CGDF---SNPEGVAETVRKIRPD-VIVNAAAHTAVDKAESEPEF 76 (299)
T ss_pred HHHHHHHHhhccC-CEEE-eccccccc---------cCCC---CCHHHHHHHHHhcCCC-EEEECCccCCcchhhcCHHH
Confidence 4888998887777 5553 44322110 0112 2333322222223588 7887642 32
Q ss_pred -------HHHHHHHHHHhcCCCEEEEcC
Q 028115 70 -------AVNGNAELYSKVGVPFVMGTT 90 (213)
Q Consensus 70 -------~~~~~~~~~~~~g~~~ViGTT 90 (213)
++...++.|.+.|+++|.-+|
T Consensus 77 ~~~~N~~~~~~l~~aa~~~g~~~v~~Ss 104 (299)
T PRK09987 77 AQLLNATSVEAIAKAANEVGAWVVHYST 104 (299)
T ss_pred HHHHHHHHHHHHHHHHHHcCCeEEEEcc
Confidence 245677889999999998777
No 222
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=55.76 E-value=46 Score=29.19 Aligned_cols=49 Identities=20% Similarity=0.237 Sum_probs=37.8
Q ss_pred EEEEcCChHHHHHHHHHHHhcCCCEEEEcCCCCHHHHHHHHHccCCcEEEccC
Q 028115 61 IVVDYTVPAAVNGNAELYSKVGVPFVMGTTGGDRVRLHETIENSNVYAVISPQ 113 (213)
Q Consensus 61 VvIDFS~p~~~~~~~~~~~~~g~~~ViGTTG~~~~~~~~~~~~~~~~~v~a~N 113 (213)
+.||-.+|+.+...++ .|.++|-=.+|+..+++-.+.+..+.|+|+-++
T Consensus 78 lsiDT~~~~vi~~al~----~G~~iINsis~~~~~~~~~l~~~~~~~vV~m~~ 126 (257)
T TIGR01496 78 ISVDTYRAEVARAALE----AGADIINDVSGGQDPAMLEVAAEYGVPLVLMHM 126 (257)
T ss_pred EEEeCCCHHHHHHHHH----cCCCEEEECCCCCCchhHHHHHHcCCcEEEEeC
Confidence 8999999998765554 599999999999655566666677788777543
No 223
>PRK07062 short chain dehydrogenase; Provisional
Probab=55.70 E-value=92 Score=26.06 Aligned_cols=72 Identities=24% Similarity=0.225 Sum_probs=45.1
Q ss_pred ChHHHHHHHHhCCCeEEEEecCCCccccccccccCceeEeecCCchhHHHhhhhcCCC--C--EEEEEcCChHHHHHHHH
Q 028115 1 MGKAVIKAADAAGLELVPVSFGTEEESGQKVEVCGKEIQVHGLSDRESVLASVFDKYP--N--MIVVDYTVPAAVNGNAE 76 (213)
Q Consensus 1 MG~~i~~~~~~~~~elv~~~~~~~~~~g~~~~~~~~~v~i~~~~~~~~~l~~~~~~~~--d--~VvIDFS~p~~~~~~~~ 76 (213)
+|+.+++.+.+.|..++.. ++.+. .+++..+++....+ . .+-.|++.++.+...++
T Consensus 20 iG~~ia~~l~~~G~~V~~~-~r~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~ 79 (265)
T PRK07062 20 IGLATVELLLEAGASVAIC-GRDEE-------------------RLASAEARLREKFPGARLLAARCDVLDEADVAAFAA 79 (265)
T ss_pred HHHHHHHHHHHCCCeEEEE-eCCHH-------------------HHHHHHHHHHhhCCCceEEEEEecCCCHHHHHHHHH
Confidence 4788888888888887643 33221 11222222211111 2 24679999999999988
Q ss_pred HHHh--cCCCEEEEcCCC
Q 028115 77 LYSK--VGVPFVMGTTGG 92 (213)
Q Consensus 77 ~~~~--~g~~~ViGTTG~ 92 (213)
.+.+ -++.+||-..|+
T Consensus 80 ~~~~~~g~id~li~~Ag~ 97 (265)
T PRK07062 80 AVEARFGGVDMLVNNAGQ 97 (265)
T ss_pred HHHHhcCCCCEEEECCCC
Confidence 8765 357889988885
No 224
>COG1879 RbsB ABC-type sugar transport system, periplasmic component [Carbohydrate transport and metabolism]
Probab=55.62 E-value=65 Score=28.11 Aligned_cols=39 Identities=15% Similarity=0.203 Sum_probs=33.7
Q ss_pred cCCCCEEEEEcCChHHHHHHHHHHHhcCCCEEEEcCCCC
Q 028115 55 DKYPNMIVVDYTVPAAVNGNAELYSKVGVPFVMGTTGGD 93 (213)
Q Consensus 55 ~~~~d~VvIDFS~p~~~~~~~~~~~~~g~~~ViGTTG~~ 93 (213)
..++|.++|.=..|.++.+.++.+.+.|+|+|.=-+..+
T Consensus 89 a~~~daIiv~~~d~~~~~~~v~~a~~aGIpVv~~d~~~~ 127 (322)
T COG1879 89 AQGVDAIIINPVDPDALTPAVKKAKAAGIPVVTVDSDIP 127 (322)
T ss_pred HcCCCEEEEcCCChhhhHHHHHHHHHCCCcEEEEecCCC
Confidence 357887889999999999999999999999998766543
No 225
>TIGR03586 PseI pseudaminic acid synthase.
Probab=55.49 E-value=56 Score=29.93 Aligned_cols=74 Identities=16% Similarity=0.117 Sum_probs=41.8
Q ss_pred CChHHHHHHHHHHHhcCC-CEEE--EcCCCC-------HHHHHHHHHccCCcEEEccChhHHHHHHHHHHHHHHHhcCCC
Q 028115 66 TVPAAVNGNAELYSKVGV-PFVM--GTTGGD-------RVRLHETIENSNVYAVISPQMGKQVVAFLAAMEIMAEQFPGA 135 (213)
Q Consensus 66 S~p~~~~~~~~~~~~~g~-~~Vi--GTTG~~-------~~~~~~~~~~~~~~~v~a~N~SlGv~ll~~l~~~aa~~l~~~ 135 (213)
++.+.+...+++..+.|. .+++ ||++|. ...+..+.+..+.||=||- =+.|.. +-.||-.++
T Consensus 144 ~t~~Ei~~Av~~i~~~g~~~i~LlhC~s~YP~~~~~~nL~~i~~lk~~f~~pVG~SD-Ht~G~~-----~~~aAva~G-- 215 (327)
T TIGR03586 144 ATLEEIQEAVEACREAGCKDLVLLKCTSSYPAPLEDANLRTIPDLAERFNVPVGLSD-HTLGIL-----APVAAVALG-- 215 (327)
T ss_pred CCHHHHHHHHHHHHHCCCCcEEEEecCCCCCCCcccCCHHHHHHHHHHhCCCEEeeC-CCCchH-----HHHHHHHcC--
Confidence 455556666666666666 4666 777764 1234445555566765654 556641 222333343
Q ss_pred CCCCcEEEEeccCCCCC
Q 028115 136 FSGYSLQVLESHQAGKL 152 (213)
Q Consensus 136 ~~~~dieI~E~HH~~K~ 152 (213)
..|+|.|-.--+
T Consensus 216 -----A~iIEkH~tld~ 227 (327)
T TIGR03586 216 -----ACVIEKHFTLDR 227 (327)
T ss_pred -----CCEEEeCCChhh
Confidence 349999975433
No 226
>PLN03194 putative disease resistance protein; Provisional
Probab=55.31 E-value=77 Score=26.93 Aligned_cols=108 Identities=12% Similarity=0.101 Sum_probs=65.1
Q ss_pred CCCCEEEEEcCChHH---HHHHHHHH-HhcCCCEEEEcCCCC-----HHHHHHHHHccCCc-EEEccChhHHHHHHHHHH
Q 028115 56 KYPNMIVVDYTVPAA---VNGNAELY-SKVGVPFVMGTTGGD-----RVRLHETIENSNVY-AVISPQMGKQVVAFLAAM 125 (213)
Q Consensus 56 ~~~d~VvIDFS~p~~---~~~~~~~~-~~~g~~~ViGTTG~~-----~~~~~~~~~~~~~~-~v~a~N~SlGv~ll~~l~ 125 (213)
..+| |.|-|.-++. ...++..+ .+.|+.+-+--..+. ...+....+.+++. +|+|+||.--..-|.+|+
T Consensus 25 ~~yD-VFISFrG~DtR~~FvshL~~aL~~~GI~vF~D~~el~~G~~i~~~L~~AIeeSri~IvVfS~~Ya~S~WCLdEL~ 103 (187)
T PLN03194 25 KPCD-VFINHRGIDTKRTIATLLYDHLSRLNLRPFLDNKNMKPGDKLFDKINSAIRNCKVGVAVFSPRYCESYFCLHELA 103 (187)
T ss_pred CCCc-EEEeCCCccccccHHHHHHHHHHHCCCEEEEcCccccCCCcHHHHHHHHHHhCeEEEEEECCCcccchhHHHHHH
Confidence 4678 9999999974 45555444 557888877554332 13454445567755 588999998888888888
Q ss_pred HHHHH---hcCCCCCCCcEEEEeccCCCCCCc-hHHHHHHHHHHHh
Q 028115 126 EIMAE---QFPGAFSGYSLQVLESHQAGKLDT-SGTAKAVISCFQK 167 (213)
Q Consensus 126 ~~aa~---~l~~~~~~~dieI~E~HH~~K~Da-SGTA~~la~~~~~ 167 (213)
+.... .+| .| |+++--+..|.++... .-+-..+-++|..
T Consensus 104 ~I~e~~~~ViP-IF--Y~VdPsdVr~q~~~~~~~e~v~~Wr~AL~~ 146 (187)
T PLN03194 104 LIMESKKRVIP-IF--CDVKPSQLRVVDNGTCPDEEIRRFNWALEE 146 (187)
T ss_pred HHHHcCCEEEE-EE--ecCCHHHhhccccCCCCHHHHHHHHHHHHH
Confidence 87643 232 22 5555555544322222 3345555555543
No 227
>PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional
Probab=55.15 E-value=37 Score=34.88 Aligned_cols=62 Identities=8% Similarity=0.128 Sum_probs=49.0
Q ss_pred EEEEEcCChHHHHHHHHHHHhcCCCEEEEcCCC----C--HHHHHHHHHccCCcEEEccChhHHHHHH
Q 028115 60 MIVVDYTVPAAVNGNAELYSKVGVPFVMGTTGG----D--RVRLHETIENSNVYAVISPQMGKQVVAF 121 (213)
Q Consensus 60 ~VvIDFS~p~~~~~~~~~~~~~g~~~ViGTTG~----~--~~~~~~~~~~~~~~~v~a~N~SlGv~ll 121 (213)
.|+||.|.-+.....+..++++|+.+|..--.. . -+++.+++++.++.+.|.++..=|+-++
T Consensus 543 ~vvVd~t~~~~~~~~~~~aL~~G~~VVtaNK~~~a~~~~~~~~l~~~a~~~~~~~~yEasV~~giPii 610 (810)
T PRK09466 543 LVVLDVTASEQLALQYPDFASHGFHVISANKLAGSSPSNFYRQIKDAFAKTGRHWLYNATVGAGLPIN 610 (810)
T ss_pred cEEEECCCChHHHHHHHHHHHcCCEEEcCCcccccccHHHHHHHHHHHHHcCCeEEEeceeeeccChH
Confidence 389999988888888889999999999887643 1 2466777777778888888877777663
No 228
>TIGR01520 FruBisAldo_II_A fructose-bisphosphate aldolase, class II, yeast/E. coli subtype. This model represents one of two deeply split, architecturally distinct clades of the family that includes class II fructose-bisphosphate aldolases, tagatose-bisphosphate aldolases, and related uncharacterized proteins. This family is well-conserved and includes characterized FBA from Saccharomyces cerevisiae, Escherichia coli, and Corynebacterium glutamicum. Proteins outside the scope of this model may also be designated as class II fructose-bisphosphate aldolases, but are well separated in an alignment-based phylogenetic tree.
Probab=55.00 E-value=47 Score=30.97 Aligned_cols=49 Identities=14% Similarity=0.254 Sum_probs=38.1
Q ss_pred CchhHHHhhhhcCCCCEEEEEcCChHHHHHHHHHHHhcCCCEEEEcCCC
Q 028115 44 SDRESVLASVFDKYPNMIVVDYTVPAAVNGNAELYSKVGVPFVMGTTGG 92 (213)
Q Consensus 44 ~~~~~~l~~~~~~~~d~VvIDFS~p~~~~~~~~~~~~~g~~~ViGTTG~ 92 (213)
+++.+.|....+.+.-+-.+.+.+.+.+...++.|.+.+.|+++.++-.
T Consensus 13 ~~~~~lL~~A~~~~yAVgAfNv~n~e~~~Avi~AAEe~~sPvIlq~s~~ 61 (357)
T TIGR01520 13 DDVHKLFQYAKENNFAIPAINCTSSSTINAALEAAADVKSPIIIQFSNG 61 (357)
T ss_pred HHHHHHHHHHHHCCceEEEEEeCCHHHHHHHHHHHHHhCCCEEEEcCcc
Confidence 4555555554444555568999999999999999999999999998654
No 229
>PRK05993 short chain dehydrogenase; Provisional
Probab=54.99 E-value=69 Score=27.31 Aligned_cols=68 Identities=12% Similarity=0.177 Sum_probs=44.0
Q ss_pred ChHHHHHHHHhCCCeEEEEecCCCccccccccccCceeEeecCCchhHHHhhhhcCCCCEEEEEcCChHHHHHHHHHHHh
Q 028115 1 MGKAVIKAADAAGLELVPVSFGTEEESGQKVEVCGKEIQVHGLSDRESVLASVFDKYPNMIVVDYTVPAAVNGNAELYSK 80 (213)
Q Consensus 1 MG~~i~~~~~~~~~elv~~~~~~~~~~g~~~~~~~~~v~i~~~~~~~~~l~~~~~~~~d~VvIDFS~p~~~~~~~~~~~~ 80 (213)
+|+.+++.+.++|.+|+.. ++.+ +.+++ +.....+.+..|++.++.+...++.+.+
T Consensus 16 iG~~la~~l~~~G~~Vi~~-~r~~-------------------~~~~~----l~~~~~~~~~~Dl~d~~~~~~~~~~~~~ 71 (277)
T PRK05993 16 IGAYCARALQSDGWRVFAT-CRKE-------------------EDVAA----LEAEGLEAFQLDYAEPESIAALVAQVLE 71 (277)
T ss_pred HHHHHHHHHHHCCCEEEEE-ECCH-------------------HHHHH----HHHCCceEEEccCCCHHHHHHHHHHHHH
Confidence 4888888888888887753 2221 11111 1111334356899999999998888755
Q ss_pred c---CCCEEEEcCCC
Q 028115 81 V---GVPFVMGTTGG 92 (213)
Q Consensus 81 ~---g~~~ViGTTG~ 92 (213)
. ++.+|+-..|+
T Consensus 72 ~~~g~id~li~~Ag~ 86 (277)
T PRK05993 72 LSGGRLDALFNNGAY 86 (277)
T ss_pred HcCCCccEEEECCCc
Confidence 2 57888877764
No 230
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=54.94 E-value=26 Score=30.83 Aligned_cols=53 Identities=15% Similarity=0.212 Sum_probs=28.7
Q ss_pred hhhhcCCCC-EEEEEcCChHHHHHHHHHHHhcCCCEEE-EcCCCCHHHHHHHHHcc
Q 028115 51 ASVFDKYPN-MIVVDYTVPAAVNGNAELYSKVGVPFVM-GTTGGDRVRLHETIENS 104 (213)
Q Consensus 51 ~~~~~~~~d-~VvIDFS~p~~~~~~~~~~~~~g~~~Vi-GTTG~~~~~~~~~~~~~ 104 (213)
+.+.+...| +++.|.. ++...+.++.|.++|+.+|. .|.--+.+.++.+++.+
T Consensus 111 ~~~~~aGvdGviipDLp-~ee~~~~~~~~~~~gl~~I~lvap~t~~eri~~i~~~s 165 (258)
T PRK13111 111 ADAAEAGVDGLIIPDLP-PEEAEELRAAAKKHGLDLIFLVAPTTTDERLKKIASHA 165 (258)
T ss_pred HHHHHcCCcEEEECCCC-HHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHhC
Confidence 333334455 3444554 35566667777777766666 33333455566665554
No 231
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=54.91 E-value=61 Score=28.44 Aligned_cols=49 Identities=16% Similarity=0.194 Sum_probs=38.6
Q ss_pred EEEEcCChHHHHHHHHHHHhcCCCEEEEcCCCCH-HHHHHHHHccCCcEEEccC
Q 028115 61 IVVDYTVPAAVNGNAELYSKVGVPFVMGTTGGDR-VRLHETIENSNVYAVISPQ 113 (213)
Q Consensus 61 VvIDFS~p~~~~~~~~~~~~~g~~~ViGTTG~~~-~~~~~~~~~~~~~~v~a~N 113 (213)
+-||-++|+.+...+ +.|.++|=-.+|+.. +++-.+....+.++|+.++
T Consensus 79 lSIDT~~~~v~e~al----~~G~~iINdisg~~~~~~~~~l~~~~~~~vV~m~~ 128 (257)
T cd00739 79 ISVDTFRAEVARAAL----EAGADIINDVSGGSDDPAMLEVAAEYGAPLVLMHM 128 (257)
T ss_pred EEEeCCCHHHHHHHH----HhCCCEEEeCCCCCCChHHHHHHHHcCCCEEEECC
Confidence 899999999776555 458999999999974 6666777777888877654
No 232
>PRK09197 fructose-bisphosphate aldolase; Provisional
Probab=54.87 E-value=53 Score=30.52 Aligned_cols=48 Identities=13% Similarity=0.158 Sum_probs=35.8
Q ss_pred chhHHHhhhhcCCCCEEEEEcCChHHHHHHHHHHHhcCCCEEEEcCCC
Q 028115 45 DRESVLASVFDKYPNMIVVDYTVPAAVNGNAELYSKVGVPFVMGTTGG 92 (213)
Q Consensus 45 ~~~~~l~~~~~~~~d~VvIDFS~p~~~~~~~~~~~~~g~~~ViGTTG~ 92 (213)
++.+.|....+...-+-.+++.+.+.+...++.|.+.+.|+++.++-.
T Consensus 8 ~~k~~L~~A~~~~yAV~AfNv~n~e~~~avi~AAee~~sPVIlq~s~~ 55 (350)
T PRK09197 8 DYQEMFDRAKENGFALPAVNVVGTDSINAVLEGAAEAKSPVIIQFSNG 55 (350)
T ss_pred HHHHHHHHHHHCCceEEEEEeCCHHHHHHHHHHHHHHCCCEEEEcChh
Confidence 334444443333444568899999999999999999999999988653
No 233
>PRK05693 short chain dehydrogenase; Provisional
Probab=54.45 E-value=95 Score=26.23 Aligned_cols=68 Identities=25% Similarity=0.257 Sum_probs=44.9
Q ss_pred ChHHHHHHHHhCCCeEEEEecCCCccccccccccCceeEeecCCchhHHHhhhhcCCCCEEEEEcCChHHHHHHHHHHHh
Q 028115 1 MGKAVIKAADAAGLELVPVSFGTEEESGQKVEVCGKEIQVHGLSDRESVLASVFDKYPNMIVVDYTVPAAVNGNAELYSK 80 (213)
Q Consensus 1 MG~~i~~~~~~~~~elv~~~~~~~~~~g~~~~~~~~~v~i~~~~~~~~~l~~~~~~~~d~VvIDFS~p~~~~~~~~~~~~ 80 (213)
+|+.+++.+.+.|.+|+.. ++... +++. +.......+..|++.++.+.+.++.+.+
T Consensus 13 iG~~la~~l~~~G~~V~~~-~r~~~-------------------~~~~----~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 68 (274)
T PRK05693 13 IGRALADAFKAAGYEVWAT-ARKAE-------------------DVEA----LAAAGFTAVQLDVNDGAALARLAEELEA 68 (274)
T ss_pred HHHHHHHHHHHCCCEEEEE-eCCHH-------------------HHHH----HHHCCCeEEEeeCCCHHHHHHHHHHHHH
Confidence 4888998888888887753 32210 1111 1111233356899999999999988865
Q ss_pred c--CCCEEEEcCCC
Q 028115 81 V--GVPFVMGTTGG 92 (213)
Q Consensus 81 ~--g~~~ViGTTG~ 92 (213)
. ++.+|+=..|.
T Consensus 69 ~~~~id~vi~~ag~ 82 (274)
T PRK05693 69 EHGGLDVLINNAGY 82 (274)
T ss_pred hcCCCCEEEECCCC
Confidence 3 57888888884
No 234
>PRK12829 short chain dehydrogenase; Provisional
Probab=54.19 E-value=87 Score=25.96 Aligned_cols=33 Identities=21% Similarity=0.251 Sum_probs=26.4
Q ss_pred EEEEcCChHHHHHHHHHHHhc--CCCEEEEcCCCC
Q 028115 61 IVVDYTVPAAVNGNAELYSKV--GVPFVMGTTGGD 93 (213)
Q Consensus 61 VvIDFS~p~~~~~~~~~~~~~--g~~~ViGTTG~~ 93 (213)
+..|++.++.+...++.+.+. ++..|+-..|..
T Consensus 63 ~~~D~~~~~~~~~~~~~~~~~~~~~d~vi~~ag~~ 97 (264)
T PRK12829 63 TVADVADPAQVERVFDTAVERFGGLDVLVNNAGIA 97 (264)
T ss_pred EEccCCCHHHHHHHHHHHHHHhCCCCEEEECCCCC
Confidence 678999999998888877653 788898777754
No 235
>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=54.14 E-value=62 Score=28.95 Aligned_cols=50 Identities=10% Similarity=0.115 Sum_probs=30.9
Q ss_pred EEEEcCChHHHHHHHHHHHhcCCCEEEEcCCCCH-----H----HHHHHHHccCCcEEE
Q 028115 61 IVVDYTVPAAVNGNAELYSKVGVPFVMGTTGGDR-----V----RLHETIENSNVYAVI 110 (213)
Q Consensus 61 VvIDFS~p~~~~~~~~~~~~~g~~~ViGTTG~~~-----~----~~~~~~~~~~~~~v~ 110 (213)
..+...+.+.+...++.|.+.+.|+++.+.-... + -++.+++.+++||.+
T Consensus 16 ~AfN~~n~e~~~avi~AAe~~~sPvIi~~~~~~~~~~~~~~~~~~~~~~a~~~~VPV~l 74 (276)
T cd00947 16 GAFNINNLETLKAILEAAEETRSPVILQISEGAIKYAGLELLVAMVKAAAERASVPVAL 74 (276)
T ss_pred EEEeeCCHHHHHHHHHHHHHhCCCEEEEcCcchhhhCCHHHHHHHHHHHHHHCCCCEEE
Confidence 4666667777777777777777777776643221 1 234455556677655
No 236
>PRK15447 putative protease; Provisional
Probab=53.82 E-value=84 Score=28.10 Aligned_cols=72 Identities=14% Similarity=0.106 Sum_probs=49.4
Q ss_pred CchhHHHhhhhcCCCCEEEEE---------cCChHHHHHHHHHHHhcCCCEEEEcCCC-C-HHHHHHHHHcc--CCcEEE
Q 028115 44 SDRESVLASVFDKYPNMIVVD---------YTVPAAVNGNAELYSKVGVPFVMGTTGG-D-RVRLHETIENS--NVYAVI 110 (213)
Q Consensus 44 ~~~~~~l~~~~~~~~d~VvID---------FS~p~~~~~~~~~~~~~g~~~ViGTTG~-~-~~~~~~~~~~~--~~~~v~ 110 (213)
.+.+...+.+.+..+|.|.+. || ++.+.+.++.+.++|+.+++.|.-. . +++++.+.+.. +...|+
T Consensus 15 ~~~~~~~~~~~~~gaDaVY~g~~~~~~R~~f~-~~~l~e~v~~~~~~gkkvyva~p~i~~~~~e~~~l~~~l~~~~~~v~ 93 (301)
T PRK15447 15 ETVRDFYQRAADSPVDIVYLGETVCSKRRELK-VGDWLELAERLAAAGKEVVLSTLALVEAPSELKELRRLVENGEFLVE 93 (301)
T ss_pred CCHHHHHHHHHcCCCCEEEECCccCCCccCCC-HHHHHHHHHHHHHcCCEEEEEecccccCHHHHHHHHHHHhcCCCEEE
Confidence 344444555555568867776 63 5779999999999999999999886 2 55655554432 244677
Q ss_pred ccChhH
Q 028115 111 SPQMGK 116 (213)
Q Consensus 111 a~N~Sl 116 (213)
..|++.
T Consensus 94 v~d~g~ 99 (301)
T PRK15447 94 ANDLGA 99 (301)
T ss_pred EeCHHH
Confidence 888775
No 237
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=53.69 E-value=59 Score=28.53 Aligned_cols=12 Identities=33% Similarity=0.606 Sum_probs=6.3
Q ss_pred CCCEEEEcCCCC
Q 028115 82 GVPFVMGTTGGD 93 (213)
Q Consensus 82 g~~~ViGTTG~~ 93 (213)
++|++.|+++.+
T Consensus 70 ~~~vi~gv~~~~ 81 (292)
T PRK03170 70 RVPVIAGTGSNS 81 (292)
T ss_pred CCcEEeecCCch
Confidence 455555555544
No 238
>cd06356 PBP1_Amide_Urea_BP_like Periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF). This group includes the type I periplasmic-binding proteins that are predicted to have a function similar to that of an active transport system for short chain amides and/or urea in bacteria and Archaea, by sequence comparison and phylogenetic analysis.
Probab=53.66 E-value=1e+02 Score=27.12 Aligned_cols=40 Identities=20% Similarity=0.233 Sum_probs=28.4
Q ss_pred CCchhHHHhhhhcCCCCEEEEEcCChHHHHHHHHHHHhcCC
Q 028115 43 LSDRESVLASVFDKYPNMIVVDYTVPAAVNGNAELYSKVGV 83 (213)
Q Consensus 43 ~~~~~~~l~~~~~~~~d~VvIDFS~p~~~~~~~~~~~~~g~ 83 (213)
..|+...+..+...+|| +|+-...+......++.+.+.|.
T Consensus 173 ~~d~~~~v~~l~~~~pd-~v~~~~~~~~~~~~~~~~~~~G~ 212 (334)
T cd06356 173 VSDFGSTIQKIQAAKPD-FVMSILVGANHLSFYRQWAAAGL 212 (334)
T ss_pred chhHHHHHHHHHhcCCC-EEEEeccCCcHHHHHHHHHHcCC
Confidence 34777777777777899 55554445556678888889887
No 239
>PRK08040 putative semialdehyde dehydrogenase; Provisional
Probab=53.66 E-value=86 Score=28.77 Aligned_cols=103 Identities=17% Similarity=0.163 Sum_probs=60.0
Q ss_pred hHHHHHHHHh---CCCeEEEEecCCCccccccccccCceeEeecCCchhHHHhhhhcCCCCEEEEEcCCh-HHHHHHHHH
Q 028115 2 GKAVIKAADA---AGLELVPVSFGTEEESGQKVEVCGKEIQVHGLSDRESVLASVFDKYPNMIVVDYTVP-AAVNGNAEL 77 (213)
Q Consensus 2 G~~i~~~~~~---~~~elv~~~~~~~~~~g~~~~~~~~~v~i~~~~~~~~~l~~~~~~~~d~VvIDFS~p-~~~~~~~~~ 77 (213)
|+++++.+.+ +..+|+..... ...|+.+.+.+..+.+. ++++ ....+.| + +=|..| ....+.++.
T Consensus 17 G~ellrlL~~~~hP~~~l~~laS~--~saG~~~~~~~~~~~v~---~~~~----~~~~~~D-v-vf~a~p~~~s~~~~~~ 85 (336)
T PRK08040 17 GEALLELLAERQFPVGELYALASE--ESAGETLRFGGKSVTVQ---DAAE----FDWSQAQ-L-AFFVAGREASAAYAEE 85 (336)
T ss_pred HHHHHHHHhcCCCCceEEEEEEcc--CcCCceEEECCcceEEE---eCch----hhccCCC-E-EEECCCHHHHHHHHHH
Confidence 8899998875 67787765332 35676665444445553 2222 1112567 4 445445 456678888
Q ss_pred HHhcCCCEEE-------------EcCCCCHHHHHHHHHccCCcEEEccC-hhHHH
Q 028115 78 YSKVGVPFVM-------------GTTGGDRVRLHETIENSNVYAVISPQ-MGKQV 118 (213)
Q Consensus 78 ~~~~g~~~Vi-------------GTTG~~~~~~~~~~~~~~~~~v~a~N-~SlGv 118 (213)
+.+.|+.+|= |-..++.+.++.+. +..++-.|| +..++
T Consensus 86 ~~~~g~~VIDlS~~fRl~~~vP~~lPEvn~~~l~~i~---~~~iIAnPgC~~t~~ 137 (336)
T PRK08040 86 ATNAGCLVIDSSGLFALEPDVPLVVPEVNPFVLADYR---NRNIIAVADSLTSQL 137 (336)
T ss_pred HHHCCCEEEECChHhcCCCCCceEccccCHHHHhhhc---cCCEEECCCHHHHHH
Confidence 8888886553 33445555555553 245788898 44443
No 240
>PRK09545 znuA high-affinity zinc transporter periplasmic component; Reviewed
Probab=53.65 E-value=75 Score=28.49 Aligned_cols=40 Identities=5% Similarity=-0.022 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHhcCCCEEEEcCCCCHHHHHHHHHccCCcE
Q 028115 69 AAVNGNAELYSKVGVPFVMGTTGGDRVRLHETIENSNVYA 108 (213)
Q Consensus 69 ~~~~~~~~~~~~~g~~~ViGTTG~~~~~~~~~~~~~~~~~ 108 (213)
.-+.+.++...++++++|+.-+.++....+.++++.++++
T Consensus 239 ~~l~~l~~~ik~~~v~~If~e~~~~~~~~~~la~e~g~~v 278 (311)
T PRK09545 239 QRLHEIRTQLVEQKATCVFAEPQFRPAVIESVAKGTSVRM 278 (311)
T ss_pred HHHHHHHHHHHHcCCCEEEecCCCChHHHHHHHHhcCCeE
Confidence 3344444444444444444444444444444444444333
No 241
>PRK13505 formate--tetrahydrofolate ligase; Provisional
Probab=53.63 E-value=83 Score=31.10 Aligned_cols=102 Identities=23% Similarity=0.148 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHhcCCCEEEEcCCCC---HHH---HHHHHHccCCcEEEccChhHHHHHHHHHHHHHHHhcCCCCCC----
Q 028115 69 AAVNGNAELYSKVGVPFVMGTTGGD---RVR---LHETIENSNVYAVISPQMGKQVVAFLAAMEIMAEQFPGAFSG---- 138 (213)
Q Consensus 69 ~~~~~~~~~~~~~g~~~ViGTTG~~---~~~---~~~~~~~~~~~~v~a~N~SlGv~ll~~l~~~aa~~l~~~~~~---- 138 (213)
..+..+++-+.++|+|+|+.---|+ +++ +++++++.++++++|.-|+-|-.=-..+++...+.+...-.+
T Consensus 359 ~NL~RHIenvr~FGvPvVVAINKFd~DTe~Ei~~I~~~c~e~Gv~va~~~~~~~Gg~Gai~LA~aVveA~~~~~s~f~~l 438 (557)
T PRK13505 359 ANLERHIENIRKFGVPVVVAINKFVTDTDAEIAALKELCEELGVEVALSEVWAKGGEGGVELAEKVVELIEEGESNFKPL 438 (557)
T ss_pred HHHHHHHHHHHHcCCCEEEEEeCCCCCCHHHHHHHHHHHHHcCCCEEEecccccCCcchHHHHHHHHHHHhcCCCCCcee
Confidence 3466788899999999999999996 334 556677777999999999987554444554443332210011
Q ss_pred C--cEEE--------EeccCCCCCCchHHHHHHHHHHHhcCC
Q 028115 139 Y--SLQV--------LESHQAGKLDTSGTAKAVISCFQKLGV 170 (213)
Q Consensus 139 ~--dieI--------~E~HH~~K~DaSGTA~~la~~~~~~~~ 170 (213)
| +..+ -|.-+...++-|-.|.+=.+.++++|+
T Consensus 439 Y~~d~sl~eKIe~IAkkIYGA~~V~~s~~A~kqL~~~e~~Gf 480 (557)
T PRK13505 439 YDDEDSLEEKIEKIATKIYGAKGVEFSPKAKKQLKQIEKNGW 480 (557)
T ss_pred cCCCCcHHHHHHHHHHHccCCCCeeECHHHHHHHHHHHHcCC
Confidence 1 1111 124555555556677765556666664
No 242
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=53.20 E-value=47 Score=30.70 Aligned_cols=120 Identities=21% Similarity=0.295 Sum_probs=66.4
Q ss_pred ChHHHHHHHHhCCCeEEEEecCCCccccccc-cccCceeEeecCCchhHHHhhhhcCCCCEEEEEcCChHHHHHHHHHHH
Q 028115 1 MGKAVIKAADAAGLELVPVSFGTEEESGQKV-EVCGKEIQVHGLSDRESVLASVFDKYPNMIVVDYTVPAAVNGNAELYS 79 (213)
Q Consensus 1 MG~~i~~~~~~~~~elv~~~~~~~~~~g~~~-~~~~~~v~i~~~~~~~~~l~~~~~~~~d~VvIDFS~p~~~~~~~~~~~ 79 (213)
+|.+.++++..-|.++++. +.+++.. +++ .++ -...+.. .|.+. ...+.. .+| ++||+..+..+...++...
T Consensus 178 lGh~avQ~Aka~ga~Via~-~~~~~K~-e~a~~lG-Ad~~i~~-~~~~~-~~~~~~-~~d-~ii~tv~~~~~~~~l~~l~ 250 (339)
T COG1064 178 LGHMAVQYAKAMGAEVIAI-TRSEEKL-ELAKKLG-ADHVINS-SDSDA-LEAVKE-IAD-AIIDTVGPATLEPSLKALR 250 (339)
T ss_pred HHHHHHHHHHHcCCeEEEE-eCChHHH-HHHHHhC-CcEEEEc-CCchh-hHHhHh-hCc-EEEECCChhhHHHHHHHHh
Confidence 3788888988888999875 4333110 111 111 1112221 11111 222222 388 8999999888999999998
Q ss_pred hcCCCEEEEcCCCCH-HHH--HHHHHccCCcEEEccChhHHHHHHHHHHHHHHH
Q 028115 80 KVGVPFVMGTTGGDR-VRL--HETIENSNVYAVISPQMGKQVVAFLAAMEIMAE 130 (213)
Q Consensus 80 ~~g~~~ViGTTG~~~-~~~--~~~~~~~~~~~v~a~N~SlGv~ll~~l~~~aa~ 130 (213)
..|.=+++|-.+... ..+ ..+. ..++.+.=|.+.+ .+=+.++++.+++
T Consensus 251 ~~G~~v~vG~~~~~~~~~~~~~~li-~~~~~i~GS~~g~--~~d~~e~l~f~~~ 301 (339)
T COG1064 251 RGGTLVLVGLPGGGPIPLLPAFLLI-LKEISIVGSLVGT--RADLEEALDFAAE 301 (339)
T ss_pred cCCEEEEECCCCCcccCCCCHHHhh-hcCeEEEEEecCC--HHHHHHHHHHHHh
Confidence 999988888886221 111 1111 1123444343343 4556667776665
No 243
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=53.15 E-value=62 Score=28.26 Aligned_cols=106 Identities=15% Similarity=0.194 Sum_probs=55.1
Q ss_pred ChHHHHHHHHhCCCeEEEEecCCCcccccccc-------ccC----ceeEeecCCchhHHHhhhhcCCCCEEEEEcCChH
Q 028115 1 MGKAVIKAADAAGLELVPVSFGTEEESGQKVE-------VCG----KEIQVHGLSDRESVLASVFDKYPNMIVVDYTVPA 69 (213)
Q Consensus 1 MG~~i~~~~~~~~~elv~~~~~~~~~~g~~~~-------~~~----~~v~i~~~~~~~~~l~~~~~~~~d~VvIDFS~p~ 69 (213)
||..++..+.+.|+++. .+++.+........ ..+ .++.. ..+.++++ ..+| ++|=.+.+.
T Consensus 12 mG~~~a~~L~~~g~~V~-~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-----~~~D-~vi~~v~~~ 82 (325)
T PRK00094 12 WGTALAIVLARNGHDVT-LWARDPEQAAEINADRENPRYLPGIKLPDNLRA--TTDLAEAL-----ADAD-LILVAVPSQ 82 (325)
T ss_pred HHHHHHHHHHhCCCEEE-EEECCHHHHHHHHHcCcccccCCCCcCCCCeEE--eCCHHHHH-----hCCC-EEEEeCCHH
Confidence 79999999888888864 44543321110000 000 01222 23554433 2578 778777777
Q ss_pred HHHHHHHHHHh---cCCCEEEEcCCCCHH---HHHH-HHHc----cCCcEEEccChh
Q 028115 70 AVNGNAELYSK---VGVPFVMGTTGGDRV---RLHE-TIEN----SNVYAVISPQMG 115 (213)
Q Consensus 70 ~~~~~~~~~~~---~g~~~ViGTTG~~~~---~~~~-~~~~----~~~~~v~a~N~S 115 (213)
.+.+.++...+ .+..+|.-+.|++.+ .+.+ +.+. ....++..||+.
T Consensus 83 ~~~~v~~~l~~~~~~~~~vi~~~ngv~~~~~~~~~~~l~~~~~~~~~~~~~~~P~~~ 139 (325)
T PRK00094 83 ALREVLKQLKPLLPPDAPIVWATKGIEPGTGKLLSEVLEEELPDLAPIAVLSGPSFA 139 (325)
T ss_pred HHHHHHHHHHhhcCCCCEEEEEeecccCCCCCcHHHHHHHHcCCCCceEEEECccHH
Confidence 77777666554 344455555477642 1222 2222 134456678864
No 244
>TIGR01534 GAPDH-I glyceraldehyde-3-phosphate dehydrogenase, type I. The noise level is set relative not to E4PD, but the next closest outliers, the class II GAPDH's (found in archaea, TIGR01546) and aspartate semialdehyde dehydrogenase (ASADH, TIGR01296) both of which have highest-scoring hits around -225 to the prior model.
Probab=53.11 E-value=62 Score=29.63 Aligned_cols=86 Identities=22% Similarity=0.152 Sum_probs=51.4
Q ss_pred ChHHHHHHHH-h--CCCeEEEEecCCC--------------ccc-------cc-cccccCc-eeEeecCCchhHHHhhhh
Q 028115 1 MGKAVIKAAD-A--AGLELVPVSFGTE--------------EES-------GQ-KVEVCGK-EIQVHGLSDRESVLASVF 54 (213)
Q Consensus 1 MG~~i~~~~~-~--~~~elv~~~~~~~--------------~~~-------g~-~~~~~~~-~v~i~~~~~~~~~l~~~~ 54 (213)
+||.+.+++. . .++++|+.-+... +.. +. .+.+.|. .+.+....++++. ...
T Consensus 10 IGr~~~r~~~~~~~~~~~ivaind~~~~~~~ayll~yDS~hg~~~~~v~~~~~~~l~i~g~~~i~v~~~~dp~~~--~w~ 87 (327)
T TIGR01534 10 IGRLVLRAILEKQGLDLEVVAINDLTDLEYLAYLLKYDSVHGRFEGEVTADEDKGLVVNGKFVIVVASERDPSDL--PWK 87 (327)
T ss_pred HHHHHHHHHHhccCCceEEEEEecCCCHHHHHHHhcccCCCCCCCCcEEecCCceEEECCeEEEEEEecCCcccC--chh
Confidence 4899999876 4 4799998755110 000 11 1233344 4555532333331 122
Q ss_pred cCCCCEEEEEcCChHHHHHHHHHHHhcCCCEEEEc
Q 028115 55 DKYPNMIVVDYTVPAAVNGNAELYSKVGVPFVMGT 89 (213)
Q Consensus 55 ~~~~d~VvIDFS~p~~~~~~~~~~~~~g~~~ViGT 89 (213)
+...| ++++-|-.....+.....++.|...|+=|
T Consensus 88 ~~gvD-iVle~tG~~~s~~~a~~hl~~Gak~V~iS 121 (327)
T TIGR01534 88 ALGVD-IVIECTGKFRDKEKLEGHLEAGAKKVLIS 121 (327)
T ss_pred hcCCC-EEEEccchhhcHHHHHHHhhCCCEEEEeC
Confidence 22578 88998888888888888888886655544
No 245
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=53.01 E-value=26 Score=30.68 Aligned_cols=23 Identities=30% Similarity=0.536 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHhcCCC--EEEEcCC
Q 028115 69 AAVNGNAELYSKVGVP--FVMGTTG 91 (213)
Q Consensus 69 ~~~~~~~~~~~~~g~~--~ViGTTG 91 (213)
+++.++++++.+.|+. +|.||||
T Consensus 22 ~~~~~~i~~l~~~Gv~gl~~~GstG 46 (289)
T PF00701_consen 22 DALKRLIDFLIEAGVDGLVVLGSTG 46 (289)
T ss_dssp HHHHHHHHHHHHTTSSEEEESSTTT
T ss_pred HHHHHHHHHHHHcCCCEEEECCCCc
Confidence 6677777777777775 3446777
No 246
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=52.95 E-value=67 Score=28.30 Aligned_cols=88 Identities=15% Similarity=0.123 Sum_probs=45.4
Q ss_pred ChHHHHHHHHhCCCeEEEEecCCCccc--cccccccCceeEeec-CCchhHHHhhhhcCCCCEEEEEcCC-hHHHHHHHH
Q 028115 1 MGKAVIKAADAAGLELVPVSFGTEEES--GQKVEVCGKEIQVHG-LSDRESVLASVFDKYPNMIVVDYTV-PAAVNGNAE 76 (213)
Q Consensus 1 MG~~i~~~~~~~~~elv~~~~~~~~~~--g~~~~~~~~~v~i~~-~~~~~~~l~~~~~~~~d~VvIDFS~-p~~~~~~~~ 76 (213)
+|+++++.+...|.+.+.+++..+... -+.+ |....+.. ..+.++..+......+|+++||.+- +..+...++
T Consensus 172 vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~---Ga~~~i~~~~~~~~~~~~~~~~~~~d~~v~d~~G~~~~~~~~~~ 248 (347)
T PRK10309 172 IGLLAIQCAVALGAKSVTAIDINSEKLALAKSL---GAMQTFNSREMSAPQIQSVLRELRFDQLILETAGVPQTVELAIE 248 (347)
T ss_pred HHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHc---CCceEecCcccCHHHHHHHhcCCCCCeEEEECCCCHHHHHHHHH
Confidence 477788887778887544444332110 0111 11011110 0112222221111234547899988 557777788
Q ss_pred HHHhcCCCEEEEcCC
Q 028115 77 LYSKVGVPFVMGTTG 91 (213)
Q Consensus 77 ~~~~~g~~~ViGTTG 91 (213)
.....|.=+++|.++
T Consensus 249 ~l~~~G~iv~~G~~~ 263 (347)
T PRK10309 249 IAGPRAQLALVGTLH 263 (347)
T ss_pred HhhcCCEEEEEccCC
Confidence 877778777778654
No 247
>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=52.87 E-value=1.2e+02 Score=25.31 Aligned_cols=69 Identities=19% Similarity=0.169 Sum_probs=43.0
Q ss_pred ChHHHHHHHHhCCCeEEEEecCCCccccccccccCceeEeecCCchhHHHhhhhcCCCCEEEEEcCChHHHHHHHHHHHh
Q 028115 1 MGKAVIKAADAAGLELVPVSFGTEEESGQKVEVCGKEIQVHGLSDRESVLASVFDKYPNMIVVDYTVPAAVNGNAELYSK 80 (213)
Q Consensus 1 MG~~i~~~~~~~~~elv~~~~~~~~~~g~~~~~~~~~v~i~~~~~~~~~l~~~~~~~~d~VvIDFS~p~~~~~~~~~~~~ 80 (213)
+|+.+++.+.+.|.+++....+.. + ..+++.......+..|.+.++.+.+.++.+.+
T Consensus 19 IG~~~a~~l~~~G~~v~~~~~~~~--------------------~---~~~~l~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 75 (255)
T PRK06463 19 IGRAIAEAFLREGAKVAVLYNSAE--------------------N---EAKELREKGVFTIKCDVGNRDQVKKSKEVVEK 75 (255)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCcH--------------------H---HHHHHHhCCCeEEEecCCCHHHHHHHHHHHHH
Confidence 478888888877887764321111 0 01111111233367899999999999888766
Q ss_pred c--CCCEEEEcCCC
Q 028115 81 V--GVPFVMGTTGG 92 (213)
Q Consensus 81 ~--g~~~ViGTTG~ 92 (213)
. ++.+||-..|.
T Consensus 76 ~~~~id~li~~ag~ 89 (255)
T PRK06463 76 EFGRVDVLVNNAGI 89 (255)
T ss_pred HcCCCCEEEECCCc
Confidence 4 57788877775
No 248
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=52.84 E-value=1.3e+02 Score=27.79 Aligned_cols=22 Identities=14% Similarity=0.022 Sum_probs=17.3
Q ss_pred ChHHHHHHHHhCCCeEEEEecCC
Q 028115 1 MGKAVIKAADAAGLELVPVSFGT 23 (213)
Q Consensus 1 MG~~i~~~~~~~~~elv~~~~~~ 23 (213)
||..++..+.+.|+++.+ ++..
T Consensus 11 ~G~~lA~~La~~G~~V~~-~d~~ 32 (411)
T TIGR03026 11 VGLPLAALLADLGHEVTG-VDID 32 (411)
T ss_pred hhHHHHHHHHhcCCeEEE-EECC
Confidence 788999888888999775 4543
No 249
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=52.69 E-value=68 Score=28.82 Aligned_cols=32 Identities=9% Similarity=0.016 Sum_probs=22.3
Q ss_pred EEEEEcCChHHHHHHHHHHHhcCCCEEEEcCC
Q 028115 60 MIVVDYTVPAAVNGNAELYSKVGVPFVMGTTG 91 (213)
Q Consensus 60 ~VvIDFS~p~~~~~~~~~~~~~g~~~ViGTTG 91 (213)
+-.+++.+.+.+...++.|.+.+.|+++.++-
T Consensus 20 V~AfN~~n~e~~~avi~AAe~~~sPvIl~~~~ 51 (283)
T PRK07998 20 AGAFNTTNLETTISILNAIERSGLPNFIQIAP 51 (283)
T ss_pred EEEEeeCCHHHHHHHHHHHHHhCCCEEEECcH
Confidence 34666677777777777777777777776644
No 250
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=52.64 E-value=86 Score=26.27 Aligned_cols=72 Identities=15% Similarity=0.146 Sum_probs=45.6
Q ss_pred ChHHHHHHHHhCCCeEEEEecCCCccccccccccCceeEeecCCchhHHHhhhhc-CCCCEEEEEcCChHHHHHHHHHHH
Q 028115 1 MGKAVIKAADAAGLELVPVSFGTEEESGQKVEVCGKEIQVHGLSDRESVLASVFD-KYPNMIVVDYTVPAAVNGNAELYS 79 (213)
Q Consensus 1 MG~~i~~~~~~~~~elv~~~~~~~~~~g~~~~~~~~~v~i~~~~~~~~~l~~~~~-~~~d~VvIDFS~p~~~~~~~~~~~ 79 (213)
+|+.+++.+.++|..++.. ++.+. .+++..+++.. .....+-.|.+.++.+.+.++.+.
T Consensus 12 IG~aia~~l~~~G~~V~~~-~r~~~-------------------~~~~~~~~l~~~~~~~~~~~Dv~d~~~~~~~~~~~~ 71 (259)
T PRK08340 12 IGFNVARELLKKGARVVIS-SRNEE-------------------NLEKALKELKEYGEVYAVKADLSDKDDLKNLVKEAW 71 (259)
T ss_pred HHHHHHHHHHHcCCEEEEE-eCCHH-------------------HHHHHHHHHHhcCCceEEEcCCCCHHHHHHHHHHHH
Confidence 5899999988889887643 32221 11222222211 112235689999999999988776
Q ss_pred hc--CCCEEEEcCCC
Q 028115 80 KV--GVPFVMGTTGG 92 (213)
Q Consensus 80 ~~--g~~~ViGTTG~ 92 (213)
+. ++.+||-..|+
T Consensus 72 ~~~g~id~li~naG~ 86 (259)
T PRK08340 72 ELLGGIDALVWNAGN 86 (259)
T ss_pred HhcCCCCEEEECCCC
Confidence 53 57899887775
No 251
>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase. This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.
Probab=52.49 E-value=1e+02 Score=26.03 Aligned_cols=69 Identities=17% Similarity=0.283 Sum_probs=40.4
Q ss_pred ChHHHHHHHHhCCCeEEEEecCCCccccccccccCceeEeecCCchhHHHhhhhcCCCCEEEEEcCChH-----------
Q 028115 1 MGKAVIKAADAAGLELVPVSFGTEEESGQKVEVCGKEIQVHGLSDRESVLASVFDKYPNMIVVDYTVPA----------- 69 (213)
Q Consensus 1 MG~~i~~~~~~~~~elv~~~~~~~~~~g~~~~~~~~~v~i~~~~~~~~~l~~~~~~~~d~VvIDFS~p~----------- 69 (213)
+|+.+++.+.+.|.++.+. .+.. ..+...+++.++++ ..++| +||++..+.
T Consensus 11 iG~~l~~~l~~~g~~v~~~-~r~~-------------~d~~~~~~~~~~~~---~~~~d-~vi~~a~~~~~~~~~~~~~~ 72 (287)
T TIGR01214 11 LGRELVQQLSPEGRVVVAL-TSSQ-------------LDLTDPEALERLLR---AIRPD-AVVNTAAYTDVDGAESDPEK 72 (287)
T ss_pred HHHHHHHHHHhcCCEEEEe-CCcc-------------cCCCCHHHHHHHHH---hCCCC-EEEECCccccccccccCHHH
Confidence 4889999988889988754 3221 11111223333333 23578 788876431
Q ss_pred -------HHHHHHHHHHhcCCCEEE
Q 028115 70 -------AVNGNAELYSKVGVPFVM 87 (213)
Q Consensus 70 -------~~~~~~~~~~~~g~~~Vi 87 (213)
.+...++.|.+.+.++|.
T Consensus 73 ~~~~n~~~~~~l~~~~~~~~~~~v~ 97 (287)
T TIGR01214 73 AFAVNALAPQNLARAAARHGARLVH 97 (287)
T ss_pred HHHHHHHHHHHHHHHHHHcCCeEEE
Confidence 244556677777777764
No 252
>PRK08267 short chain dehydrogenase; Provisional
Probab=52.44 E-value=92 Score=25.98 Aligned_cols=72 Identities=15% Similarity=0.064 Sum_probs=45.2
Q ss_pred ChHHHHHHHHhCCCeEEEEecCCCccccccccccCceeEeecCCchhHHHhhhhcCCCCEEEEEcCChHHHHHHHHHHHh
Q 028115 1 MGKAVIKAADAAGLELVPVSFGTEEESGQKVEVCGKEIQVHGLSDRESVLASVFDKYPNMIVVDYTVPAAVNGNAELYSK 80 (213)
Q Consensus 1 MG~~i~~~~~~~~~elv~~~~~~~~~~g~~~~~~~~~v~i~~~~~~~~~l~~~~~~~~d~VvIDFS~p~~~~~~~~~~~~ 80 (213)
+|+.+++.+.+.|.+++.. ++... ..++....+.......+.+|++.++.+.+.++.+.+
T Consensus 13 iG~~la~~l~~~G~~V~~~-~r~~~-------------------~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~ 72 (260)
T PRK08267 13 IGRATALLFAAEGWRVGAY-DINEA-------------------GLAALAAELGAGNAWTGALDVTDRAAWDAALADFAA 72 (260)
T ss_pred HHHHHHHHHHHCCCeEEEE-eCCHH-------------------HHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHH
Confidence 5888999888888877643 32221 111111111111233367899999999998887765
Q ss_pred c---CCCEEEEcCCC
Q 028115 81 V---GVPFVMGTTGG 92 (213)
Q Consensus 81 ~---g~~~ViGTTG~ 92 (213)
. ++.+|+-..|.
T Consensus 73 ~~~~~id~vi~~ag~ 87 (260)
T PRK08267 73 ATGGRLDVLFNNAGI 87 (260)
T ss_pred HcCCCCCEEEECCCC
Confidence 3 67888888874
No 253
>PRK05865 hypothetical protein; Provisional
Probab=52.43 E-value=1.3e+02 Score=31.19 Aligned_cols=99 Identities=12% Similarity=0.207 Sum_probs=51.8
Q ss_pred ChHHHHHHHHhCCCeEEEEecCCCccccccccccCceeEeecCCchhHHHhhhhcCCCCEEEEEcCCh---------HHH
Q 028115 1 MGKAVIKAADAAGLELVPVSFGTEEESGQKVEVCGKEIQVHGLSDRESVLASVFDKYPNMIVVDYTVP---------AAV 71 (213)
Q Consensus 1 MG~~i~~~~~~~~~elv~~~~~~~~~~g~~~~~~~~~v~i~~~~~~~~~l~~~~~~~~d~VvIDFS~p---------~~~ 71 (213)
+|+.+++.+.+.|.++++.....+..... +..+...+..|.+.. .++. ..+| +||.+..+ ..+
T Consensus 12 IGs~La~~Ll~~G~~Vv~l~R~~~~~~~~-----~v~~v~gDL~D~~~l-~~al-~~vD-~VVHlAa~~~~~~~vNv~GT 83 (854)
T PRK05865 12 LGRGLTARLLSQGHEVVGIARHRPDSWPS-----SADFIAADIRDATAV-ESAM-TGAD-VVAHCAWVRGRNDHINIDGT 83 (854)
T ss_pred HHHHHHHHHHHCcCEEEEEECCchhhccc-----CceEEEeeCCCHHHH-HHHH-hCCC-EEEECCCcccchHHHHHHHH
Confidence 48899999888899988653322111100 111111111233332 2222 2588 89998643 345
Q ss_pred HHHHHHHHhcCCC-EEEEcCCCCHHHHHHHHHccCCcE
Q 028115 72 NGNAELYSKVGVP-FVMGTTGGDRVRLHETIENSNVYA 108 (213)
Q Consensus 72 ~~~~~~~~~~g~~-~ViGTTG~~~~~~~~~~~~~~~~~ 108 (213)
...++.|.+.++. +|.-+|.. ....+.+....++++
T Consensus 84 ~nLLeAa~~~gvkr~V~iSS~~-K~aaE~ll~~~gl~~ 120 (854)
T PRK05865 84 ANVLKAMAETGTGRIVFTSSGH-QPRVEQMLADCGLEW 120 (854)
T ss_pred HHHHHHHHHcCCCeEEEECCcH-HHHHHHHHHHcCCCE
Confidence 5677888888875 44444433 333344444455554
No 254
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=52.40 E-value=67 Score=28.52 Aligned_cols=24 Identities=29% Similarity=0.254 Sum_probs=16.4
Q ss_pred hHHHHHHHHHHHhcCCC--EEEEcCC
Q 028115 68 PAAVNGNAELYSKVGVP--FVMGTTG 91 (213)
Q Consensus 68 p~~~~~~~~~~~~~g~~--~ViGTTG 91 (213)
.+.+..+++++++.|+. +|.||||
T Consensus 20 ~~~l~~lv~~~~~~Gv~gi~v~GstG 45 (294)
T TIGR02313 20 EEALRELIEFQIEGGSHAISVGGTSG 45 (294)
T ss_pred HHHHHHHHHHHHHcCCCEEEECccCc
Confidence 35667777777777766 4557777
No 255
>PRK10840 transcriptional regulator RcsB; Provisional
Probab=52.20 E-value=1e+02 Score=25.04 Aligned_cols=72 Identities=8% Similarity=0.176 Sum_probs=40.4
Q ss_pred CchhHHHhhhhcCCCCEEEEEcCChH----HHHHHHHHHHh--cCCCEEEEcCCCCHHHHHHHHHccCCcEEEccChhH
Q 028115 44 SDRESVLASVFDKYPNMIVVDYTVPA----AVNGNAELYSK--VGVPFVMGTTGGDRVRLHETIENSNVYAVISPQMGK 116 (213)
Q Consensus 44 ~~~~~~l~~~~~~~~d~VvIDFS~p~----~~~~~~~~~~~--~g~~~ViGTTG~~~~~~~~~~~~~~~~~v~a~N~Sl 116 (213)
.+.++++..+....||.|++|...|. .-.+.++...+ ..+|+|+-|.-.+.+...... ..++--+++-+++.
T Consensus 36 ~~~~~~~~~~~~~~~DlvllD~~l~~~~~~~g~~~~~~l~~~~~~~~iIvls~~~~~~~~~~a~-~~Ga~~yl~K~~~~ 113 (216)
T PRK10840 36 EDSTALINNLPKLDAHVLITDLSMPGDKYGDGITLIKYIKRHFPSLSIIVLTMNNNPAILSAVL-DLDIEGIVLKQGAP 113 (216)
T ss_pred CCHHHHHHHHHhCCCCEEEEeCcCCCCCCCCHHHHHHHHHHHCCCCcEEEEEecCCHHHHHHHH-HCCCeEEEECCCCH
Confidence 35555555554557898889988876 34555555443 346777666544444443333 34544444545554
No 256
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=52.15 E-value=1.6e+02 Score=25.57 Aligned_cols=104 Identities=14% Similarity=0.154 Sum_probs=59.6
Q ss_pred ChHHHHHHHHhCC----CeEEEEecCCCccccccccccCceeEeecCCchhHHHhhhhcCCCCEEEEEcCChHHHHHHHH
Q 028115 1 MGKAVIKAADAAG----LELVPVSFGTEEESGQKVEVCGKEIQVHGLSDRESVLASVFDKYPNMIVVDYTVPAAVNGNAE 76 (213)
Q Consensus 1 MG~~i~~~~~~~~----~elv~~~~~~~~~~g~~~~~~~~~v~i~~~~~~~~~l~~~~~~~~d~VvIDFS~p~~~~~~~~ 76 (213)
||+.+++.+.+.+ .++. ++++.++..-+.+. ...++.+. .+..+++ ..+| |||=-..|..+.+.++
T Consensus 14 mG~aia~~l~~~g~~~~~~v~-v~~r~~~~~~~~l~-~~~g~~~~--~~~~e~~-----~~aD-vVilav~p~~~~~vl~ 83 (279)
T PRK07679 14 IAEAIIGGLLHANVVKGEQIT-VSNRSNETRLQELH-QKYGVKGT--HNKKELL-----TDAN-ILFLAMKPKDVAEALI 83 (279)
T ss_pred HHHHHHHHHHHCCCCCcceEE-EECCCCHHHHHHHH-HhcCceEe--CCHHHHH-----hcCC-EEEEEeCHHHHHHHHH
Confidence 8999999887655 4554 34543311111110 01133332 3444433 2578 7777777888777776
Q ss_pred HHHh---cCCCEEEEcCCCCHHHHHHHHHccCCcEEEc-cChh
Q 028115 77 LYSK---VGVPFVMGTTGGDRVRLHETIENSNVYAVIS-PQMG 115 (213)
Q Consensus 77 ~~~~---~g~~~ViGTTG~~~~~~~~~~~~~~~~~v~a-~N~S 115 (213)
.... .+.-+|.-..|.+.++++++.. .+.|++.+ ||++
T Consensus 84 ~l~~~~~~~~liIs~~aGi~~~~l~~~~~-~~~~v~r~mPn~~ 125 (279)
T PRK07679 84 PFKEYIHNNQLIISLLAGVSTHSIRNLLQ-KDVPIIRAMPNTS 125 (279)
T ss_pred HHHhhcCCCCEEEEECCCCCHHHHHHHcC-CCCeEEEECCCHH
Confidence 5543 3444555569999888877643 23677765 7766
No 257
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=52.08 E-value=79 Score=26.98 Aligned_cols=62 Identities=15% Similarity=0.258 Sum_probs=41.9
Q ss_pred cCCCCEEEEEcCChHHHHHHHHHHHhcCCCEEEEcCC-CCHHHHHHHHHccCCcEEEccChhHHH
Q 028115 55 DKYPNMIVVDYTVPAAVNGNAELYSKVGVPFVMGTTG-GDRVRLHETIENSNVYAVISPQMGKQV 118 (213)
Q Consensus 55 ~~~~d~VvIDFS~p~~~~~~~~~~~~~g~~~ViGTTG-~~~~~~~~~~~~~~~~~v~a~N~SlGv 118 (213)
+.....+=|.|++|.+....-+...+++ .+.+|.=. ++.++.+...+ ++.-.++||||.-.+
T Consensus 31 ~~Gi~~iEit~~t~~a~~~i~~l~~~~~-~~~vGAGTVl~~~~a~~a~~-aGA~FivsP~~~~~v 93 (204)
T TIGR01182 31 EGGLRVLEVTLRTPVALDAIRLLRKEVP-DALIGAGTVLNPEQLRQAVD-AGAQFIVSPGLTPEL 93 (204)
T ss_pred HcCCCEEEEeCCCccHHHHHHHHHHHCC-CCEEEEEeCCCHHHHHHHHH-cCCCEEECCCCCHHH
Confidence 3456657799999987665444444554 57776544 56777666554 677889999998743
No 258
>PRK06114 short chain dehydrogenase; Provisional
Probab=52.06 E-value=1.2e+02 Score=25.18 Aligned_cols=73 Identities=11% Similarity=0.087 Sum_probs=45.4
Q ss_pred ChHHHHHHHHhCCCeEEEEecCCCccccccccccCceeEeecCCchhHHHhhhhcC--CCCEEEEEcCChHHHHHHHHHH
Q 028115 1 MGKAVIKAADAAGLELVPVSFGTEEESGQKVEVCGKEIQVHGLSDRESVLASVFDK--YPNMIVVDYTVPAAVNGNAELY 78 (213)
Q Consensus 1 MG~~i~~~~~~~~~elv~~~~~~~~~~g~~~~~~~~~v~i~~~~~~~~~l~~~~~~--~~d~VvIDFS~p~~~~~~~~~~ 78 (213)
+|+.+++.+.+.|.+++.. ++..+ ..+++..+++... ....+-.|++.++.+.+.++.+
T Consensus 20 IG~~ia~~l~~~G~~v~~~-~r~~~------------------~~~~~~~~~l~~~~~~~~~~~~D~~~~~~i~~~~~~~ 80 (254)
T PRK06114 20 IGQRIAIGLAQAGADVALF-DLRTD------------------DGLAETAEHIEAAGRRAIQIAADVTSKADLRAAVART 80 (254)
T ss_pred HHHHHHHHHHHCCCEEEEE-eCCcc------------------hHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHH
Confidence 4888999888888887753 32210 0111112222111 1223567999999999988887
Q ss_pred Hh--cCCCEEEEcCCC
Q 028115 79 SK--VGVPFVMGTTGG 92 (213)
Q Consensus 79 ~~--~g~~~ViGTTG~ 92 (213)
.+ .++..||-..|.
T Consensus 81 ~~~~g~id~li~~ag~ 96 (254)
T PRK06114 81 EAELGALTLAVNAAGI 96 (254)
T ss_pred HHHcCCCCEEEECCCC
Confidence 66 357788888885
No 259
>PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=52.00 E-value=82 Score=28.27 Aligned_cols=54 Identities=9% Similarity=0.042 Sum_probs=36.9
Q ss_pred CCCEEEEEcCChHHHHHHHHHHHhcCCCEEEEcCCCCH-----HH----HHHHHHccCCcEEE
Q 028115 57 YPNMIVVDYTVPAAVNGNAELYSKVGVPFVMGTTGGDR-----VR----LHETIENSNVYAVI 110 (213)
Q Consensus 57 ~~d~VvIDFS~p~~~~~~~~~~~~~g~~~ViGTTG~~~-----~~----~~~~~~~~~~~~v~ 110 (213)
+.-+-.+++.+.+.+...++.|.+.+.|+++.++-... +. +..+++.+++||.+
T Consensus 17 ~yaV~AfNv~n~e~~~avi~AAee~~sPvIlq~~~~~~~~~g~~~~~~~~~~~A~~~~VPVal 79 (284)
T PRK12857 17 GYAVGAFNCNNMEIVQAIVAAAEAEKSPVIIQASQGAIKYAGIEYISAMVRTAAEKASVPVAL 79 (284)
T ss_pred CCeEEEEEeCCHHHHHHHHHHHHHhCCCEEEEechhHhhhCCHHHHHHHHHHHHHHCCCCEEE
Confidence 33345778888888888888888888888888765321 11 34455666788765
No 260
>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut
Probab=51.80 E-value=15 Score=32.65 Aligned_cols=34 Identities=9% Similarity=0.075 Sum_probs=26.9
Q ss_pred hcCCCEEEEcCC----CCHHHHHHHHHccCCcEEEc-cC
Q 028115 80 KVGVPFVMGTTG----GDRVRLHETIENSNVYAVIS-PQ 113 (213)
Q Consensus 80 ~~g~~~ViGTTG----~~~~~~~~~~~~~~~~~v~a-~N 113 (213)
+.+-.+.||++| |+++-++.+++..+-|++++ +|
T Consensus 104 ~~kptvlIG~S~~~g~ft~evv~~Ma~~~~~PIIFaLSN 142 (254)
T cd00762 104 AAKPDFLIGVSRVGGAFTPEVIRAXAEINERPVIFALSN 142 (254)
T ss_pred hhCCCEEEEeCCCCCCCCHHHHHHHhhcCCCCEEEECCC
Confidence 457789999998 78888888887777888775 44
No 261
>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain. The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.
Probab=51.56 E-value=63 Score=24.23 Aligned_cols=83 Identities=14% Similarity=0.199 Sum_probs=40.5
Q ss_pred ChHHHHHHHH-hCCCeEEEEecCCCccccccccccCceeEeecCCchhHHHhhhhcCCCCEEEEEcCChHHHHHHHH---
Q 028115 1 MGKAVIKAAD-AAGLELVPVSFGTEEESGQKVEVCGKEIQVHGLSDRESVLASVFDKYPNMIVVDYTVPAAVNGNAE--- 76 (213)
Q Consensus 1 MG~~i~~~~~-~~~~elv~~~~~~~~~~g~~~~~~~~~v~i~~~~~~~~~l~~~~~~~~d~VvIDFS~p~~~~~~~~--- 76 (213)
+|+.+++.+. .+++++++.+.+. ...|+.+......+.-....+.+. ..+....+| +++--+.++...+.++
T Consensus 11 ~g~~~~~~l~~~~~~~l~av~~~~-~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~D-vV~~~~~~~~~~~~~~~~~ 86 (122)
T smart00859 11 VGQELLRLLAEHPDFEVVALAASA-RSAGKRVSEAGPHLKGEVVLELEP--EDFEELAVD-IVFLALPHGVSKEIAPLLP 86 (122)
T ss_pred HHHHHHHHHhcCCCceEEEEEech-hhcCcCHHHHCccccccccccccc--CChhhcCCC-EEEEcCCcHHHHHHHHHHH
Confidence 4677788777 5799999885633 233444311111110000001110 011113567 7777677777777543
Q ss_pred HHHhcCCCEEE
Q 028115 77 LYSKVGVPFVM 87 (213)
Q Consensus 77 ~~~~~g~~~Vi 87 (213)
.+.+.|+-+|=
T Consensus 87 ~~~~~g~~viD 97 (122)
T smart00859 87 KAAEAGVKVID 97 (122)
T ss_pred hhhcCCCEEEE
Confidence 33456664443
No 262
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=51.48 E-value=77 Score=27.87 Aligned_cols=23 Identities=26% Similarity=0.478 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHhc-CCC--EEEEcCC
Q 028115 69 AAVNGNAELYSKV-GVP--FVMGTTG 91 (213)
Q Consensus 69 ~~~~~~~~~~~~~-g~~--~ViGTTG 91 (213)
+.+..+++++++. |+. +|.||||
T Consensus 21 ~~~~~~i~~l~~~~Gv~gi~~~GstG 46 (288)
T cd00954 21 DVLRAIVDYLIEKQGVDGLYVNGSTG 46 (288)
T ss_pred HHHHHHHHHHHhcCCCCEEEECcCCc
Confidence 3344444444444 443 2344444
No 263
>COG2229 Predicted GTPase [General function prediction only]
Probab=51.47 E-value=53 Score=27.93 Aligned_cols=51 Identities=16% Similarity=0.335 Sum_probs=38.7
Q ss_pred EEEEEcCChHHH--HHHHHHHHhcC-CCEEEEcCCCC------HHHHHHHHHcc--CCcEEE
Q 028115 60 MIVVDYTVPAAV--NGNAELYSKVG-VPFVMGTTGGD------RVRLHETIENS--NVYAVI 110 (213)
Q Consensus 60 ~VvIDFS~p~~~--~~~~~~~~~~g-~~~ViGTTG~~------~~~~~~~~~~~--~~~~v~ 110 (213)
+++||=|.|... ...+++..... +|+||+.+-++ .++++++-+.. .+|++-
T Consensus 96 ivlVDss~~~~~~a~~ii~f~~~~~~ip~vVa~NK~DL~~a~ppe~i~e~l~~~~~~~~vi~ 157 (187)
T COG2229 96 IVLVDSSRPITFHAEEIIDFLTSRNPIPVVVAINKQDLFDALPPEKIREALKLELLSVPVIE 157 (187)
T ss_pred EEEEecCCCcchHHHHHHHHHhhccCCCEEEEeeccccCCCCCHHHHHHHHHhccCCCceee
Confidence 589999999876 77788877777 99999998754 56777765555 577653
No 264
>cd06371 PBP1_sensory_GC_DEF_like Ligand-binding domain of membrane guanylyl cyclases (GC-D, GC-E, and GC-F) that are specifically expressed in sensory tissues. This group includes the ligand-binding domain of membrane guanylyl cyclases (GC-D, GC-E, and GC-F) that are specifically expressed in sensory tissues. They share a similar topology with an N-terminal extracellular ligand-binding domain, a single transmembrane domain, and a C-terminal cytosolic region that contains kinase-like and catalytic domains. GC-D is specifically expressed in a subpopulation of olfactory sensory neurons. GC-E and GC-F are colocalized within the same photoreceptor cells of the retina and have important roles in phototransduction. Unlike the other family members, GC-E and GC-F have no known extracellular ligands. Instead, they are activated under low calcium conditions by guanylyl cyclase activating proteins called GCAPs. GC-D expressing neurons have been implicated in pheromone detection and GC-D is phyloge
Probab=51.45 E-value=84 Score=28.47 Aligned_cols=47 Identities=11% Similarity=0.012 Sum_probs=35.4
Q ss_pred CchhHHHhhhhcCC-CCEEEEEcCCh-----HHHHHHHHHHHhcCCC----EEEEcCC
Q 028115 44 SDRESVLASVFDKY-PNMIVVDYTVP-----AAVNGNAELYSKVGVP----FVMGTTG 91 (213)
Q Consensus 44 ~~~~~~l~~~~~~~-~d~VvIDFS~p-----~~~~~~~~~~~~~g~~----~ViGTTG 91 (213)
.|+...|.+++... +| |||+..+. +.....++.+.+.|+. ..||+-|
T Consensus 174 ~d~~~~L~~lk~~~~~~-viv~~~~~~~~~~~~~~~i~~qa~~~Gm~~~~y~~i~~d~ 230 (382)
T cd06371 174 KGAREALKKVRSADRVR-VVIMCMHSVLIGGEEQRLLLETALEMGMTDGRYVFIPYDT 230 (382)
T ss_pred HHHHHHHHHHhcCCCcE-EEEEEeeccccCcHHHHHHHHHHHHcCCcCCcEEEEEecc
Confidence 47777788776655 58 78877665 5667899999999998 6777765
No 265
>cd06362 PBP1_mGluR Ligand binding domain of the metabotropic glutamate receptors (mGluR). Ligand binding domain of the metabotropic glutamate receptors (mGluR), which are members of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into cellular responses. mGluRs bind to glutamate and function as an excitatory neurotransmitter; they are involved in learning, memory, anxiety, and the perception of pain. Eight subtypes of mGluRs have been cloned so far, and are classified into three groups according to their sequence similarities, transduction mechanisms, and pharmacological profiles. Group I is composed of mGlu1R and mGlu5R that both stimulate PLC hydrolysis. Group II includes mGlu2R and mGlu3R, which inhibit adenylyl cyclase, as do mGlu4R, mGlu6R, mGlu7R, and mGlu8R, which form group III.
Probab=51.45 E-value=70 Score=29.43 Aligned_cols=49 Identities=8% Similarity=0.183 Sum_probs=37.0
Q ss_pred chhHHHhhhhc-CCCCEEEEEcCChHHHHHHHHHHHhcCC--C-EEEEcCCCCH
Q 028115 45 DRESVLASVFD-KYPNMIVVDYTVPAAVNGNAELYSKVGV--P-FVMGTTGGDR 94 (213)
Q Consensus 45 ~~~~~l~~~~~-~~~d~VvIDFS~p~~~~~~~~~~~~~g~--~-~ViGTTG~~~ 94 (213)
|+...+.++.. ..++ |||=|+.++.+...++.+.+.|+ + ..+|+-||..
T Consensus 217 d~~~~l~~l~~~~~a~-viil~~~~~~~~~~~~~a~~~g~~~~~~~i~~~~~~~ 269 (452)
T cd06362 217 EFDNIIRKLLSKPNAR-VVVLFCREDDIRGLLAAAKRLNAEGHFQWIASDGWGA 269 (452)
T ss_pred HHHHHHHHHhhcCCCe-EEEEEcChHHHHHHHHHHHHcCCcCceEEEEeccccc
Confidence 55555666543 3577 67778888889999999999988 3 6789999864
No 266
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=51.37 E-value=82 Score=25.87 Aligned_cols=32 Identities=13% Similarity=0.152 Sum_probs=26.2
Q ss_pred EEEEcCChHHHHHHHHHHHhc--CCCEEEEcCCC
Q 028115 61 IVVDYTVPAAVNGNAELYSKV--GVPFVMGTTGG 92 (213)
Q Consensus 61 VvIDFS~p~~~~~~~~~~~~~--g~~~ViGTTG~ 92 (213)
+..|++.++.+...++.+.+. ++..|+-+.|.
T Consensus 61 ~~~D~~~~~~~~~~~~~~~~~~~~id~vi~~ag~ 94 (239)
T PRK07666 61 ATADVSDYEEVTAAIEQLKNELGSIDILINNAGI 94 (239)
T ss_pred EECCCCCHHHHHHHHHHHHHHcCCccEEEEcCcc
Confidence 467999999999988877653 68899988885
No 267
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=51.35 E-value=1.1e+02 Score=26.58 Aligned_cols=23 Identities=22% Similarity=0.160 Sum_probs=18.3
Q ss_pred ChHHHHHHHHhCCCeEEEEecCCC
Q 028115 1 MGKAVIKAADAAGLELVPVSFGTE 24 (213)
Q Consensus 1 MG~~i~~~~~~~~~elv~~~~~~~ 24 (213)
||+.+++.+.+.|+++.. +++.+
T Consensus 10 mG~~iA~~l~~~G~~V~~-~dr~~ 32 (291)
T TIGR01505 10 MGSPMSINLAKAGYQLHV-TTIGP 32 (291)
T ss_pred HHHHHHHHHHHCCCeEEE-EcCCH
Confidence 899999998888999874 56544
No 268
>KOG1673 consensus Ras GTPases [General function prediction only]
Probab=51.21 E-value=1.1e+02 Score=25.75 Aligned_cols=69 Identities=20% Similarity=0.303 Sum_probs=46.9
Q ss_pred EEEcCChHHHHHHHHHHHh------cCCCEEEEcCCCC------HH---HH----HHHHHccCCcEEE-ccChhHHHHHH
Q 028115 62 VVDYTVPAAVNGNAELYSK------VGVPFVMGTTGGD------RV---RL----HETIENSNVYAVI-SPQMGKQVVAF 121 (213)
Q Consensus 62 vIDFS~p~~~~~~~~~~~~------~g~~~ViGTTG~~------~~---~~----~~~~~~~~~~~v~-a~N~SlGv~ll 121 (213)
+.|.|+++.+....+++.+ .-+|+.+||- |+ .+ ++ ++.++.-+.+.++ |...||.|+-.
T Consensus 99 mFDLt~r~TLnSi~~WY~QAr~~NktAiPilvGTK-yD~fi~lp~e~Q~~I~~qar~YAk~mnAsL~F~Sts~sINv~KI 177 (205)
T KOG1673|consen 99 MFDLTRRSTLNSIKEWYRQARGLNKTAIPILVGTK-YDLFIDLPPELQETISRQARKYAKVMNASLFFCSTSHSINVQKI 177 (205)
T ss_pred EEecCchHHHHHHHHHHHHHhccCCccceEEeccc-hHhhhcCCHHHHHHHHHHHHHHHHHhCCcEEEeeccccccHHHH
Confidence 4588999998887777664 4479999975 43 22 22 2234444577766 45689999988
Q ss_pred HHHHHHHHHhcC
Q 028115 122 LAAMEIMAEQFP 133 (213)
Q Consensus 122 ~~l~~~aa~~l~ 133 (213)
++++ +|+.|.
T Consensus 178 FK~v--lAklFn 187 (205)
T KOG1673|consen 178 FKIV--LAKLFN 187 (205)
T ss_pred HHHH--HHHHhC
Confidence 8874 667764
No 269
>PRK06801 hypothetical protein; Provisional
Probab=51.20 E-value=95 Score=27.85 Aligned_cols=54 Identities=6% Similarity=-0.033 Sum_probs=35.1
Q ss_pred CCCEEEEEcCChHHHHHHHHHHHhcCCCEEEEcCCCCH-----H----HHHHHHHccCCcEEE
Q 028115 57 YPNMIVVDYTVPAAVNGNAELYSKVGVPFVMGTTGGDR-----V----RLHETIENSNVYAVI 110 (213)
Q Consensus 57 ~~d~VvIDFS~p~~~~~~~~~~~~~g~~~ViGTTG~~~-----~----~~~~~~~~~~~~~v~ 110 (213)
+.-+-.+.+.+.+.+...++.|.+.+.|+++.++-... + -...+++.+++||.+
T Consensus 17 ~yaV~Afn~~n~e~~~avi~AAe~~~~PvIl~~~~~~~~~~~~~~~~~~~~~~a~~~~vpV~l 79 (286)
T PRK06801 17 GYALGAFNVLDSHFLRALFAAAKQERSPFIINIAEVHFKYISLESLVEAVKFEAARHDIPVVL 79 (286)
T ss_pred CceEEEEeeCCHHHHHHHHHHHHHHCCCEEEEeCcchhhcCCHHHHHHHHHHHHHHCCCCEEE
Confidence 33345677777888888888888888888887755321 1 234455566677765
No 270
>PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=51.18 E-value=2e+02 Score=26.34 Aligned_cols=102 Identities=18% Similarity=0.187 Sum_probs=58.9
Q ss_pred hHHHHHHHHh---CCCeEEEEecCCCccccccccccCceeEeecCCchhHHHhhhhcCCCCEEEEEcCChHHHHHHHHHH
Q 028115 2 GKAVIKAADA---AGLELVPVSFGTEEESGQKVEVCGKEIQVHGLSDRESVLASVFDKYPNMIVVDYTVPAAVNGNAELY 78 (213)
Q Consensus 2 G~~i~~~~~~---~~~elv~~~~~~~~~~g~~~~~~~~~v~i~~~~~~~~~l~~~~~~~~d~VvIDFS~p~~~~~~~~~~ 78 (213)
|+++++.+.+ +..+|+..... ...|+.+...+..+.+...+. + ++ ...| +++=.+-+....+.++.+
T Consensus 17 G~eLlrlL~~~~hP~~~l~~v~s~--~~aG~~l~~~~~~l~~~~~~~-~----~~--~~vD-~vFla~p~~~s~~~v~~~ 86 (336)
T PRK05671 17 GEALVQILEERDFPVGTLHLLASS--ESAGHSVPFAGKNLRVREVDS-F----DF--SQVQ-LAFFAAGAAVSRSFAEKA 86 (336)
T ss_pred HHHHHHHHhhCCCCceEEEEEECc--ccCCCeeccCCcceEEeeCCh-H----Hh--cCCC-EEEEcCCHHHHHHHHHHH
Confidence 8889998874 45566654332 245665544333344432221 1 11 2578 544445556688888888
Q ss_pred HhcCCCEE------------EEcCCCCHHHHHHHHHccCCcEEEccChhH
Q 028115 79 SKVGVPFV------------MGTTGGDRVRLHETIENSNVYAVISPQMGK 116 (213)
Q Consensus 79 ~~~g~~~V------------iGTTG~~~~~~~~~~~~~~~~~v~a~N~Sl 116 (213)
.+.|+.+| .|...++.++++.+ .+..++-.||=+-
T Consensus 87 ~~~G~~VIDlS~~fR~~~~pl~lPEvn~~~i~~~---~~~~iIAnPgC~~ 133 (336)
T PRK05671 87 RAAGCSVIDLSGALPSAQAPNVVPEVNAERLASL---AAPFLVSSPSASA 133 (336)
T ss_pred HHCCCeEEECchhhcCCCCCEEecccCHHHHccc---cCCCEEECCCcHH
Confidence 89998777 34444555555433 2346888899443
No 271
>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1.1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.
Probab=51.16 E-value=30 Score=30.32 Aligned_cols=73 Identities=19% Similarity=0.340 Sum_probs=40.9
Q ss_pred ChHHHHHHHHhCCCeEEEEecCCCccccccccccCceeEeecCCchhHHHhhhhcCCCCEEEEEcC----------ChH-
Q 028115 1 MGKAVIKAADAAGLELVPVSFGTEEESGQKVEVCGKEIQVHGLSDRESVLASVFDKYPNMIVVDYT----------VPA- 69 (213)
Q Consensus 1 MG~~i~~~~~~~~~elv~~~~~~~~~~g~~~~~~~~~v~i~~~~~~~~~l~~~~~~~~d~VvIDFS----------~p~- 69 (213)
+|+.+.+.+.+.++++++. .+.. +.+.+.+.+.+.+. +.+|| +||... .|+
T Consensus 12 lG~~l~~~l~~~~~~v~~~-~r~~-------------~dl~d~~~~~~~~~---~~~pd-~Vin~aa~~~~~~ce~~p~~ 73 (286)
T PF04321_consen 12 LGSALARALKERGYEVIAT-SRSD-------------LDLTDPEAVAKLLE---AFKPD-VVINCAAYTNVDACEKNPEE 73 (286)
T ss_dssp HHHHHHHHHTTTSEEEEEE-STTC-------------S-TTSHHHHHHHHH---HH--S-EEEE------HHHHHHSHHH
T ss_pred HHHHHHHHHhhCCCEEEEe-Cchh-------------cCCCCHHHHHHHHH---HhCCC-eEeccceeecHHhhhhChhh
Confidence 4888998888888888765 3221 12211122333333 34799 788874 333
Q ss_pred -------HHHHHHHHHHhcCCCEEEEcCC
Q 028115 70 -------AVNGNAELYSKVGVPFVMGTTG 91 (213)
Q Consensus 70 -------~~~~~~~~~~~~g~~~ViGTTG 91 (213)
++....+.|.++|.++|-=+|.
T Consensus 74 a~~iN~~~~~~la~~~~~~~~~li~~STd 102 (286)
T PF04321_consen 74 AYAINVDATKNLAEACKERGARLIHISTD 102 (286)
T ss_dssp HHHHHTHHHHHHHHHHHHCT-EEEEEEEG
T ss_pred hHHHhhHHHHHHHHHHHHcCCcEEEeecc
Confidence 2334677888999999876664
No 272
>PLN00016 RNA-binding protein; Provisional
Probab=51.13 E-value=1.1e+02 Score=27.51 Aligned_cols=84 Identities=20% Similarity=0.190 Sum_probs=45.6
Q ss_pred ChHHHHHHHHhCCCeEEEEecCCCcc--c-ccc---c-cccCceeEeecCCchhHHHhhhhcCCCCEEEEEcCC--hHHH
Q 028115 1 MGKAVIKAADAAGLELVPVSFGTEEE--S-GQK---V-EVCGKEIQVHGLSDRESVLASVFDKYPNMIVVDYTV--PAAV 71 (213)
Q Consensus 1 MG~~i~~~~~~~~~elv~~~~~~~~~--~-g~~---~-~~~~~~v~i~~~~~~~~~l~~~~~~~~d~VvIDFS~--p~~~ 71 (213)
+|+.+++.+.+.|+++.+..-..... . ... . .+...++.+.- .|+.+..+.+....+| +||++.. ...+
T Consensus 68 iG~~lv~~L~~~G~~V~~l~R~~~~~~~~~~~~~~~~~~l~~~~v~~v~-~D~~d~~~~~~~~~~d-~Vi~~~~~~~~~~ 145 (378)
T PLN00016 68 IGFYLAKELVKAGHEVTLFTRGKEPSQKMKKEPFSRFSELSSAGVKTVW-GDPADVKSKVAGAGFD-VVYDNNGKDLDEV 145 (378)
T ss_pred EhHHHHHHHHHCCCEEEEEecCCcchhhhccCchhhhhHhhhcCceEEE-ecHHHHHhhhccCCcc-EEEeCCCCCHHHH
Confidence 48999999888899988754322110 0 000 0 01011222211 1333311111223688 8999864 3457
Q ss_pred HHHHHHHHhcCCC-EE
Q 028115 72 NGNAELYSKVGVP-FV 86 (213)
Q Consensus 72 ~~~~~~~~~~g~~-~V 86 (213)
...++.|.+.|++ +|
T Consensus 146 ~~ll~aa~~~gvkr~V 161 (378)
T PLN00016 146 EPVADWAKSPGLKQFL 161 (378)
T ss_pred HHHHHHHHHcCCCEEE
Confidence 7888999999985 44
No 273
>PRK11150 rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Provisional
Probab=51.06 E-value=63 Score=27.89 Aligned_cols=87 Identities=14% Similarity=0.258 Sum_probs=47.1
Q ss_pred ChHHHHHHHHhCCCeEEEEecCCCccccccccccCceeEeecCCchhHHHhhhhc----CCCCEEEEEcCC--------h
Q 028115 1 MGKAVIKAADAAGLELVPVSFGTEEESGQKVEVCGKEIQVHGLSDRESVLASVFD----KYPNMIVVDYTV--------P 68 (213)
Q Consensus 1 MG~~i~~~~~~~~~elv~~~~~~~~~~g~~~~~~~~~v~i~~~~~~~~~l~~~~~----~~~d~VvIDFS~--------p 68 (213)
+|+.+++.+.+.|.+++..++...... ...... ...+.+..+.++.+..... .++| +||.+.. +
T Consensus 11 iG~~l~~~L~~~g~~~v~~~~~~~~~~-~~~~~~--~~~~~d~~~~~~~~~~~~~~~~~~~~d-~Vih~A~~~~~~~~~~ 86 (308)
T PRK11150 11 IGSNIVKALNDKGITDILVVDNLKDGT-KFVNLV--DLDIADYMDKEDFLAQIMAGDDFGDIE-AIFHEGACSSTTEWDG 86 (308)
T ss_pred HHHHHHHHHHhCCCceEEEecCCCcch-HHHhhh--hhhhhhhhhHHHHHHHHhcccccCCcc-EEEECceecCCcCCCh
Confidence 489999999888988777766432110 000000 0111111122222322211 2578 8898741 1
Q ss_pred --------HHHHHHHHHHHhcCCCEEEEcCC
Q 028115 69 --------AAVNGNAELYSKVGVPFVMGTTG 91 (213)
Q Consensus 69 --------~~~~~~~~~~~~~g~~~ViGTTG 91 (213)
..+...++.|.++++++|.-.|.
T Consensus 87 ~~~~~~n~~~t~~ll~~~~~~~~~~i~~SS~ 117 (308)
T PRK11150 87 KYMMDNNYQYSKELLHYCLEREIPFLYASSA 117 (308)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCcEEEEcch
Confidence 22446788899999998776554
No 274
>PRK10481 hypothetical protein; Provisional
Probab=50.92 E-value=1.7e+02 Score=25.45 Aligned_cols=44 Identities=11% Similarity=0.071 Sum_probs=30.3
Q ss_pred hHHHHHHHHHHHhcCCC-EEEEcCCCCHHHHHHHHHccCCcEEEc
Q 028115 68 PAAVNGNAELYSKVGVP-FVMGTTGGDRVRLHETIENSNVYAVIS 111 (213)
Q Consensus 68 p~~~~~~~~~~~~~g~~-~ViGTTG~~~~~~~~~~~~~~~~~v~a 111 (213)
++.+.+..+.....|.. +|++-|||+.+..+.+++..++||+.+
T Consensus 168 ~~~l~~aa~~L~~~gaD~Ivl~C~G~~~~~~~~le~~lg~PVI~~ 212 (224)
T PRK10481 168 EEELIDAGKELLDQGADVIVLDCLGYHQRHRDLLQKALDVPVLLS 212 (224)
T ss_pred HHHHHHHHHHhhcCCCCEEEEeCCCcCHHHHHHHHHHHCcCEEcH
Confidence 34555555555556765 678899998755666777778888765
No 275
>cd06278 PBP1_LacI_like_2 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=50.88 E-value=1.4e+02 Score=24.47 Aligned_cols=37 Identities=19% Similarity=0.237 Sum_probs=24.4
Q ss_pred HhhhhcCCCCEEEEEcCChHHHHHHHHHHHhcCCCEEEE
Q 028115 50 LASVFDKYPNMIVVDYTVPAAVNGNAELYSKVGVPFVMG 88 (213)
Q Consensus 50 l~~~~~~~~d~VvIDFS~p~~~~~~~~~~~~~g~~~ViG 88 (213)
+..+....+|.++|..+.++. ..++.+.+.|+|+|.=
T Consensus 47 i~~~~~~~vdgiii~~~~~~~--~~~~~~~~~~ipvV~~ 83 (266)
T cd06278 47 LRQLLQYRVDGVIVTSGTLSS--ELAEECRRNGIPVVLI 83 (266)
T ss_pred HHHHHHcCCCEEEEecCCCCH--HHHHHHhhcCCCEEEE
Confidence 333444578866776555543 3478888899998764
No 276
>PLN02272 glyceraldehyde-3-phosphate dehydrogenase
Probab=50.83 E-value=2.3e+02 Score=27.04 Aligned_cols=80 Identities=24% Similarity=0.237 Sum_probs=47.1
Q ss_pred ChHHHHHHHH-hCCCeEEEEecCCC----------------cccc------c-cccccCceeEeecCCchhHHHhhhhcC
Q 028115 1 MGKAVIKAAD-AAGLELVPVSFGTE----------------EESG------Q-KVEVCGKEIQVHGLSDRESVLASVFDK 56 (213)
Q Consensus 1 MG~~i~~~~~-~~~~elv~~~~~~~----------------~~~g------~-~~~~~~~~v~i~~~~~~~~~l~~~~~~ 56 (213)
+||.+.+.+. +.++++++.-++.. ...+ . .+.+.|..+.+....++++. ...+.
T Consensus 96 IGR~v~R~~~~~~~i~vvaINdp~~~~~~~ayllkyDS~hG~f~~~v~~~~~~~l~~~G~~I~V~~~~dp~~~--~w~~~ 173 (421)
T PLN02272 96 IGRLVLRIATSRDDIEVVAVNDPFIDAKYMAYMFKYDSTHGNFKGTINVVDDSTLEINGKQIKVTSKRDPAEI--PWGDF 173 (421)
T ss_pred HHHHHHHHHhhcCCcEEEEecCCCCCHHHHHHHhhhccCCCCCCCcEEEccCCEEEECCEEEEEEecCCcccC--ccccc
Confidence 4899999887 57899998644110 0001 1 11234445666633344331 12222
Q ss_pred CCCEEEEEcCChHHHHHHHHHHHhcCC
Q 028115 57 YPNMIVVDYTVPAAVNGNAELYSKVGV 83 (213)
Q Consensus 57 ~~d~VvIDFS~p~~~~~~~~~~~~~g~ 83 (213)
..| ++++-|-.....+.....++.|.
T Consensus 174 gVD-iVlesTG~f~s~e~a~~hl~aGA 199 (421)
T PLN02272 174 GAE-YVVESSGVFTTVEKASAHLKGGA 199 (421)
T ss_pred CCC-EEEEcCchhccHHHHHHHhhCCC
Confidence 578 88987777777777777777775
No 277
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=50.75 E-value=39 Score=29.45 Aligned_cols=88 Identities=16% Similarity=0.079 Sum_probs=43.1
Q ss_pred ChHHHHHHHHhCCCeEEEEecCCCc-cccccccccCceeEeecCCchhHHHhhhhcCCCCEEEEEcCChHHHHHHHHHHH
Q 028115 1 MGKAVIKAADAAGLELVPVSFGTEE-ESGQKVEVCGKEIQVHGLSDRESVLASVFDKYPNMIVVDYTVPAAVNGNAELYS 79 (213)
Q Consensus 1 MG~~i~~~~~~~~~elv~~~~~~~~-~~g~~~~~~~~~v~i~~~~~~~~~l~~~~~~~~d~VvIDFS~p~~~~~~~~~~~ 79 (213)
+|+++++.+...|.++++......+ ..-+.++. ..-+.....++..+.+........| +++|++-.+.+...++...
T Consensus 151 vG~~aiqlAk~~G~~Vi~~~~s~~~~~~~~~lGa-~~vi~~~~~~~~~~~~~~~~~~gvd-vv~d~~G~~~~~~~~~~l~ 228 (325)
T TIGR02825 151 VGSVVGQIAKLKGCKVVGAAGSDEKVAYLKKLGF-DVAFNYKTVKSLEETLKKASPDGYD-CYFDNVGGEFSNTVIGQMK 228 (325)
T ss_pred HHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCC-CEEEeccccccHHHHHHHhCCCCeE-EEEECCCHHHHHHHHHHhC
Confidence 4778888877788876654322111 00011110 0001111111333333332222356 7888887777766666666
Q ss_pred hcCCCEEEEcC
Q 028115 80 KVGVPFVMGTT 90 (213)
Q Consensus 80 ~~g~~~ViGTT 90 (213)
..|.=+.+|..
T Consensus 229 ~~G~iv~~G~~ 239 (325)
T TIGR02825 229 KFGRIAICGAI 239 (325)
T ss_pred cCcEEEEecch
Confidence 66666666654
No 278
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=50.70 E-value=2.2e+02 Score=27.48 Aligned_cols=116 Identities=7% Similarity=0.007 Sum_probs=60.0
Q ss_pred ChHHHHHHHHhCCCeEEEEecCCCccccccccccCceeEeecCCchhHHHhhhhcCCCCEEEEEcCChHHHHHHHHHHHh
Q 028115 1 MGKAVIKAADAAGLELVPVSFGTEEESGQKVEVCGKEIQVHGLSDRESVLASVFDKYPNMIVVDYTVPAAVNGNAELYSK 80 (213)
Q Consensus 1 MG~~i~~~~~~~~~elv~~~~~~~~~~g~~~~~~~~~v~i~~~~~~~~~l~~~~~~~~d~VvIDFS~p~~~~~~~~~~~~ 80 (213)
+|+.+++.+.++|++++. +|..++... .+.-.+..+-.-++.|. +++++..-.++|.|++-.+..+.....+..+.+
T Consensus 428 ~G~~la~~L~~~g~~vvv-Id~d~~~~~-~~~~~g~~~i~GD~~~~-~~L~~a~i~~a~~viv~~~~~~~~~~iv~~~~~ 504 (558)
T PRK10669 428 VGSLLGEKLLAAGIPLVV-IETSRTRVD-ELRERGIRAVLGNAANE-EIMQLAHLDCARWLLLTIPNGYEAGEIVASARE 504 (558)
T ss_pred HHHHHHHHHHHCCCCEEE-EECCHHHHH-HHHHCCCeEEEcCCCCH-HHHHhcCccccCEEEEEcCChHHHHHHHHHHHH
Confidence 488999998888888764 565442211 11001222222222333 334443334677566777776554433333333
Q ss_pred -cC-CCEEEEcCCCCHHHHHHHHHccCCcEEEccChhHHHHHHH
Q 028115 81 -VG-VPFVMGTTGGDRVRLHETIENSNVYAVISPQMGKQVVAFL 122 (213)
Q Consensus 81 -~g-~~~ViGTTG~~~~~~~~~~~~~~~~~v~a~N~SlGv~ll~ 122 (213)
++ +++|.=++ ++++.+.+. +.++-.+++|..-++-.+..
T Consensus 505 ~~~~~~iiar~~--~~~~~~~l~-~~Gad~vv~p~~~~a~~i~~ 545 (558)
T PRK10669 505 KRPDIEIIARAH--YDDEVAYIT-ERGANQVVMGEREIARTMLE 545 (558)
T ss_pred HCCCCeEEEEEC--CHHHHHHHH-HcCCCEEEChHHHHHHHHHH
Confidence 33 34444332 344544554 46777888888776654433
No 279
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=50.50 E-value=95 Score=27.85 Aligned_cols=54 Identities=9% Similarity=0.017 Sum_probs=37.9
Q ss_pred CCCEEEEEcCChHHHHHHHHHHHhcCCCEEEEcCCCCH-----H----HHHHHHHccCCcEEE
Q 028115 57 YPNMIVVDYTVPAAVNGNAELYSKVGVPFVMGTTGGDR-----V----RLHETIENSNVYAVI 110 (213)
Q Consensus 57 ~~d~VvIDFS~p~~~~~~~~~~~~~g~~~ViGTTG~~~-----~----~~~~~~~~~~~~~v~ 110 (213)
+.-+-.+.+.+.+.+...++.|.+.+.|+++.++-+.. + -...+++.+++|+.+
T Consensus 17 ~yaV~AfN~~n~e~~~avi~AAee~~sPvIiq~~~~~~~~~g~~~~~~~~~~~a~~~~VPVal 79 (284)
T PRK12737 17 GYAVPAFNIHNLETLQVVVETAAELRSPVILAGTPGTFSYAGTDYIVAIAEVAARKYNIPLAL 79 (284)
T ss_pred CceEEEEEeCCHHHHHHHHHHHHHhCCCEEEEcCccHHhhCCHHHHHHHHHHHHHHCCCCEEE
Confidence 33345778888888888888888888898888775331 1 234456667788765
No 280
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=50.50 E-value=28 Score=30.42 Aligned_cols=23 Identities=35% Similarity=0.404 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHhcCCC--EEEEcCC
Q 028115 69 AAVNGNAELYSKVGVP--FVMGTTG 91 (213)
Q Consensus 69 ~~~~~~~~~~~~~g~~--~ViGTTG 91 (213)
+++..+++++.+.|+. +|.||||
T Consensus 21 ~~~~~~i~~l~~~Gv~gl~v~GstG 45 (284)
T cd00950 21 DALERLIEFQIENGTDGLVVCGTTG 45 (284)
T ss_pred HHHHHHHHHHHHcCCCEEEECCCCc
Confidence 4555555566665554 2345555
No 281
>COG2197 CitB Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]
Probab=50.19 E-value=1.5e+02 Score=24.81 Aligned_cols=57 Identities=14% Similarity=0.190 Sum_probs=33.4
Q ss_pred hhHHHhhhhcCCCCEEEEEcCChHH-HHHHHHHH--HhcCCCEEEEcCCCCHHHHHHHHH
Q 028115 46 RESVLASVFDKYPNMIVVDYTVPAA-VNGNAELY--SKVGVPFVMGTTGGDRVRLHETIE 102 (213)
Q Consensus 46 ~~~~l~~~~~~~~d~VvIDFS~p~~-~~~~~~~~--~~~g~~~ViGTTG~~~~~~~~~~~ 102 (213)
.+++++.+....||+|++|...|.. -.+.++.. ..-.+++|+=|+--+.+.+.+.-+
T Consensus 35 ~~~~l~~~~~~~pdvvl~Dl~mP~~~G~e~~~~l~~~~p~~~vvvlt~~~~~~~v~~al~ 94 (211)
T COG2197 35 GEEALDLARELKPDVVLLDLSMPGMDGLEALKQLRARGPDIKVVVLTAHDDPAYVIRALR 94 (211)
T ss_pred HHHHHHHhhhcCCCEEEEcCCCCCCChHHHHHHHHHHCCCCcEEEEeccCCHHHHHHHHH
Confidence 3444444445689989999999852 22222222 233457777777666666555444
No 282
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=50.17 E-value=1.5e+02 Score=24.65 Aligned_cols=66 Identities=12% Similarity=0.182 Sum_probs=36.3
Q ss_pred hHHHhhhhcCCCCEEEEEcCCh---HHHHHHHHHHHhc----CCCEEEEcCCCCHHHHHHHHHccCCcE-EEccChhHHH
Q 028115 47 ESVLASVFDKYPNMIVVDYTVP---AAVNGNAELYSKV----GVPFVMGTTGGDRVRLHETIENSNVYA-VISPQMGKQV 118 (213)
Q Consensus 47 ~~~l~~~~~~~~d~VvIDFS~p---~~~~~~~~~~~~~----g~~~ViGTTG~~~~~~~~~~~~~~~~~-v~a~N~SlGv 118 (213)
++.++.+.+.+||.|.+=++.+ ..+.+.++...+. ++++++|=..++.+ +++ .++. .|++|-.-++
T Consensus 123 ~~l~~~~~~~~~d~v~lS~~~~~~~~~~~~~i~~lr~~~~~~~~~i~vGG~~~~~~----~~~--~~GaD~~~~da~~av 196 (201)
T cd02070 123 EEFVEAVKEHKPDILGLSALMTTTMGGMKEVIEALKEAGLRDKVKVMVGGAPVNQE----FAD--EIGADGYAEDAAEAV 196 (201)
T ss_pred HHHHHHHHHcCCCEEEEeccccccHHHHHHHHHHHHHCCCCcCCeEEEECCcCCHH----HHH--HcCCcEEECCHHHHH
Confidence 4444444456788555555433 3455555555555 35778887777753 221 2233 5676666554
No 283
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=50.13 E-value=1.5e+02 Score=27.36 Aligned_cols=84 Identities=10% Similarity=-0.020 Sum_probs=49.1
Q ss_pred cCChHHHHHHHHHHHhcCCC-EEE---EcCCCC--------HHHHHHHHHccCCcEEEccChhHHHHHHHHHHHHHHHhc
Q 028115 65 YTVPAAVNGNAELYSKVGVP-FVM---GTTGGD--------RVRLHETIENSNVYAVISPQMGKQVVAFLAAMEIMAEQF 132 (213)
Q Consensus 65 FS~p~~~~~~~~~~~~~g~~-~Vi---GTTG~~--------~~~~~~~~~~~~~~~v~a~N~SlGv~ll~~l~~~aa~~l 132 (213)
|++++.....++++.+.|.+ +++ ||+.|. ..-+..+.+..+.||++=|--|.|--=+...+..+|-.+
T Consensus 235 ~~t~~e~~~Ave~i~~~Gn~~i~L~erg~s~yp~~~~~~ldl~~i~~lk~~~~~PV~~d~~Hs~G~r~~~~~~a~aAva~ 314 (360)
T PRK12595 235 SATIEEFIYAAEYIMSQGNGQIILCERGIRTYEKATRNTLDISAVPILKQETHLPVMVDVTHSTGRRDLLLPTAKAALAI 314 (360)
T ss_pred CCCHHHHHHHHHHHHHCCCCCEEEECCccCCCCCCCCCCcCHHHHHHHHHHhCCCEEEeCCCCCcchhhHHHHHHHHHHc
Confidence 56777788888888877763 433 566432 223455566667888885567777211111223344444
Q ss_pred CCCCCCCcEEEEeccCCCCCCc
Q 028115 133 PGAFSGYSLQVLESHQAGKLDT 154 (213)
Q Consensus 133 ~~~~~~~dieI~E~HH~~K~Da 154 (213)
+ -|--++|.|- .|..+
T Consensus 315 G-----Adg~~iE~H~-dp~~a 330 (360)
T PRK12595 315 G-----ADGVMAEVHP-DPAVA 330 (360)
T ss_pred C-----CCeEEEEecC-CCCCC
Confidence 3 4667899988 44444
No 284
>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin
Probab=50.11 E-value=70 Score=27.80 Aligned_cols=87 Identities=14% Similarity=0.185 Sum_probs=44.9
Q ss_pred ChHHHHHHHHhCCCeEEEEecCCCccccccc-cccCceeEe-ecCCchhHHHhhhhc-CCCCEEEEEcCChHHHHHHHHH
Q 028115 1 MGKAVIKAADAAGLELVPVSFGTEEESGQKV-EVCGKEIQV-HGLSDRESVLASVFD-KYPNMIVVDYTVPAAVNGNAEL 77 (213)
Q Consensus 1 MG~~i~~~~~~~~~elv~~~~~~~~~~g~~~-~~~~~~v~i-~~~~~~~~~l~~~~~-~~~d~VvIDFS~p~~~~~~~~~ 77 (213)
+|+++++.+...|.++++... .+... +.+ .+ |....+ +...+..+.+.+... ..+| ++||++....+...++.
T Consensus 156 vG~~a~q~a~~~G~~vi~~~~-~~~~~-~~~~~~-g~~~~i~~~~~~~~~~v~~~~~~~~~d-~vid~~g~~~~~~~~~~ 231 (324)
T cd08291 156 LGRMLVRLCKADGIKVINIVR-RKEQV-DLLKKI-GAEYVLNSSDPDFLEDLKELIAKLNAT-IFFDAVGGGLTGQILLA 231 (324)
T ss_pred HHHHHHHHHHHcCCEEEEEeC-CHHHH-HHHHHc-CCcEEEECCCccHHHHHHHHhCCCCCc-EEEECCCcHHHHHHHHh
Confidence 367777777777887765432 22110 000 11 110111 111223222222211 2467 88998887777777777
Q ss_pred HHhcCCCEEEEcCC
Q 028115 78 YSKVGVPFVMGTTG 91 (213)
Q Consensus 78 ~~~~g~~~ViGTTG 91 (213)
+...|.=+.+|++.
T Consensus 232 l~~~G~~v~~g~~~ 245 (324)
T cd08291 232 MPYGSTLYVYGYLS 245 (324)
T ss_pred hCCCCEEEEEEecC
Confidence 66777777778653
No 285
>cd06344 PBP1_ABC_ligand_binding_like_9 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine/isoleucine/valine binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=50.05 E-value=1.6e+02 Score=25.68 Aligned_cols=50 Identities=6% Similarity=0.050 Sum_probs=31.3
Q ss_pred hhHHHhhhhcCCCCEEEEEcCChHHHHHHHHHHHhcCC-CEEEEcCCCCHHH
Q 028115 46 RESVLASVFDKYPNMIVVDYTVPAAVNGNAELYSKVGV-PFVMGTTGGDRVR 96 (213)
Q Consensus 46 ~~~~l~~~~~~~~d~VvIDFS~p~~~~~~~~~~~~~g~-~~ViGTTG~~~~~ 96 (213)
....+.++....|| +|+=+.....+...++.+.+.+. ..++|+.++...+
T Consensus 180 ~~~~v~~i~~~~~d-~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 230 (332)
T cd06344 180 ANTAVSQAINNGAT-VLVLFPDTDTLDKALEVAKANKGRLTLLGGDSLYTPD 230 (332)
T ss_pred HHHHHHHHHhcCCC-EEEEeCChhHHHHHHHHHHhcCCCceEEecccccCHH
Confidence 33345566666789 55555555567777887777663 4556776765443
No 286
>PRK10816 DNA-binding transcriptional regulator PhoP; Provisional
Probab=50.01 E-value=1.3e+02 Score=24.01 Aligned_cols=71 Identities=13% Similarity=0.171 Sum_probs=38.2
Q ss_pred chhHHHhhhhcCCCCEEEEEcCChHH-HHHHHHHHHh--cCCCEEEEcCCCCHHHHHHHHHccCCcEEEccChhH
Q 028115 45 DRESVLASVFDKYPNMIVVDYTVPAA-VNGNAELYSK--VGVPFVMGTTGGDRVRLHETIENSNVYAVISPQMGK 116 (213)
Q Consensus 45 ~~~~~l~~~~~~~~d~VvIDFS~p~~-~~~~~~~~~~--~g~~~ViGTTG~~~~~~~~~~~~~~~~~v~a~N~Sl 116 (213)
+.++++..+....+|.|++|...|.. -.+.++...+ ..+|+|+-|..-+.+......+ .+..-++.-.++.
T Consensus 32 ~~~~~l~~~~~~~~dlvild~~l~~~~g~~l~~~lr~~~~~~pii~ls~~~~~~~~~~~l~-~Ga~d~l~kp~~~ 105 (223)
T PRK10816 32 DAKEADYYLNEHLPDIAIVDLGLPDEDGLSLIRRWRSNDVSLPILVLTARESWQDKVEVLS-AGADDYVTKPFHI 105 (223)
T ss_pred CHHHHHHHHhhCCCCEEEEECCCCCCCHHHHHHHHHhcCCCCCEEEEEcCCCHHHHHHHHH-cCCCeeEeCCCCH
Confidence 44444444444568988999888753 2344444433 3688888765555544332222 3433333334554
No 287
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=49.80 E-value=86 Score=28.12 Aligned_cols=52 Identities=10% Similarity=0.087 Sum_probs=35.8
Q ss_pred CEEEEEcCChHHHHHHHHHHHhcCCCEEEEcCCCCH-----H----HHHHHHHccCCcEEE
Q 028115 59 NMIVVDYTVPAAVNGNAELYSKVGVPFVMGTTGGDR-----V----RLHETIENSNVYAVI 110 (213)
Q Consensus 59 d~VvIDFS~p~~~~~~~~~~~~~g~~~ViGTTG~~~-----~----~~~~~~~~~~~~~v~ 110 (213)
-+-.+++.+.+.+...++.|.+.+.|+++..+-... + -.+.+++.+++||.+
T Consensus 17 AV~AfN~~n~e~~~avi~AAee~~sPvIlq~s~~~~~~~~~~~~~~~~~~~a~~~~VPVal 77 (282)
T TIGR01858 17 AVPAFNIHNLETIQAVVETAAEMRSPVILAGTPGTFKHAGTEYIVALCSAASTTYNMPLAL 77 (282)
T ss_pred eEEEEEeCCHHHHHHHHHHHHHhCCCEEEEeCccHHhhCCHHHHHHHHHHHHHHCCCCEEE
Confidence 345777888888888888888888888887754321 1 234456666788765
No 288
>PRK07890 short chain dehydrogenase; Provisional
Probab=49.72 E-value=94 Score=25.71 Aligned_cols=72 Identities=19% Similarity=0.156 Sum_probs=44.7
Q ss_pred ChHHHHHHHHhCCCeEEEEecCCCccccccccccCceeEeecCCchhHHHhhhhc--CCCCEEEEEcCChHHHHHHHHHH
Q 028115 1 MGKAVIKAADAAGLELVPVSFGTEEESGQKVEVCGKEIQVHGLSDRESVLASVFD--KYPNMIVVDYTVPAAVNGNAELY 78 (213)
Q Consensus 1 MG~~i~~~~~~~~~elv~~~~~~~~~~g~~~~~~~~~v~i~~~~~~~~~l~~~~~--~~~d~VvIDFS~p~~~~~~~~~~ 78 (213)
+|+.+++.+.++|.+++.. ++.+. +.++..+++.. .....+..|++.++.+...++.+
T Consensus 17 IG~~la~~l~~~G~~V~~~-~r~~~-------------------~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 76 (258)
T PRK07890 17 LGRTLAVRAARAGADVVLA-ARTAE-------------------RLDEVAAEIDDLGRRALAVPTDITDEDQCANLVALA 76 (258)
T ss_pred HHHHHHHHHHHcCCEEEEE-eCCHH-------------------HHHHHHHHHHHhCCceEEEecCCCCHHHHHHHHHHH
Confidence 5889999988889887643 33221 11111111110 11223688999999999888877
Q ss_pred Hhc--CCCEEEEcCCC
Q 028115 79 SKV--GVPFVMGTTGG 92 (213)
Q Consensus 79 ~~~--g~~~ViGTTG~ 92 (213)
.+. ++..|+-..|.
T Consensus 77 ~~~~g~~d~vi~~ag~ 92 (258)
T PRK07890 77 LERFGRVDALVNNAFR 92 (258)
T ss_pred HHHcCCccEEEECCcc
Confidence 553 46688877775
No 289
>PRK08643 acetoin reductase; Validated
Probab=49.64 E-value=1.1e+02 Score=25.47 Aligned_cols=72 Identities=15% Similarity=0.126 Sum_probs=44.7
Q ss_pred ChHHHHHHHHhCCCeEEEEecCCCccccccccccCceeEeecCCchhHHHhhhhcCCCC--EEEEEcCChHHHHHHHHHH
Q 028115 1 MGKAVIKAADAAGLELVPVSFGTEEESGQKVEVCGKEIQVHGLSDRESVLASVFDKYPN--MIVVDYTVPAAVNGNAELY 78 (213)
Q Consensus 1 MG~~i~~~~~~~~~elv~~~~~~~~~~g~~~~~~~~~v~i~~~~~~~~~l~~~~~~~~d--~VvIDFS~p~~~~~~~~~~ 78 (213)
+|+.+++.+.+.|.+++.. ++... ..++...++.....+ .+-.|++.|+.+.+.++.+
T Consensus 14 iG~~la~~l~~~G~~v~~~-~r~~~-------------------~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~ 73 (256)
T PRK08643 14 IGFAIAKRLVEDGFKVAIV-DYNEE-------------------TAQAAADKLSKDGGKAIAVKADVSDRDQVFAAVRQV 73 (256)
T ss_pred HHHHHHHHHHHCCCEEEEE-eCCHH-------------------HHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHH
Confidence 4888999888888887643 32211 111111111111122 2457999999999988887
Q ss_pred Hhc--CCCEEEEcCCC
Q 028115 79 SKV--GVPFVMGTTGG 92 (213)
Q Consensus 79 ~~~--g~~~ViGTTG~ 92 (213)
.+. ++..||-..|+
T Consensus 74 ~~~~~~id~vi~~ag~ 89 (256)
T PRK08643 74 VDTFGDLNVVVNNAGV 89 (256)
T ss_pred HHHcCCCCEEEECCCC
Confidence 763 57888888875
No 290
>PRK14852 hypothetical protein; Provisional
Probab=49.63 E-value=90 Score=32.98 Aligned_cols=34 Identities=15% Similarity=0.114 Sum_probs=25.6
Q ss_pred CCCCEEEEEcCC---hHHHHHHHHHHHhcCCCEEEEcC
Q 028115 56 KYPNMIVVDYTV---PAAVNGNAELYSKVGVPFVMGTT 90 (213)
Q Consensus 56 ~~~d~VvIDFS~---p~~~~~~~~~~~~~g~~~ViGTT 90 (213)
..+| +|||-+. -+.-......|.++++|+|.++.
T Consensus 421 ~~~D-iVVDa~D~~~~~~rr~l~~~c~~~~IP~I~ag~ 457 (989)
T PRK14852 421 KDVD-LLVDGIDFFALDIRRRLFNRALELGIPVITAGP 457 (989)
T ss_pred hCCC-EEEECCCCccHHHHHHHHHHHHHcCCCEEEeec
Confidence 3678 7888544 34446677789999999998877
No 291
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=49.54 E-value=69 Score=27.95 Aligned_cols=87 Identities=8% Similarity=-0.006 Sum_probs=42.7
Q ss_pred ChHHHHHHHHhCCC-eEEEEecCCCc--cccccccccCceeEeecCCchhHHHhhhhcCCCCEEEEEcCChHHHHHHHHH
Q 028115 1 MGKAVIKAADAAGL-ELVPVSFGTEE--ESGQKVEVCGKEIQVHGLSDRESVLASVFDKYPNMIVVDYTVPAAVNGNAEL 77 (213)
Q Consensus 1 MG~~i~~~~~~~~~-elv~~~~~~~~--~~g~~~~~~~~~v~i~~~~~~~~~l~~~~~~~~d~VvIDFS~p~~~~~~~~~ 77 (213)
+|+++++.+...|. ++++......+ .+-+.++. ..+--+...++.+.+.++.....| +++|++....+...++.
T Consensus 167 vG~~aiqlAk~~G~~~Vi~~~~s~~~~~~~~~~lGa--~~vi~~~~~~~~~~i~~~~~~gvd-~vid~~g~~~~~~~~~~ 243 (345)
T cd08293 167 CGSLAGQIGRLLGCSRVVGICGSDEKCQLLKSELGF--DAAINYKTDNVAERLRELCPEGVD-VYFDNVGGEISDTVISQ 243 (345)
T ss_pred HHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhcCC--cEEEECCCCCHHHHHHHHCCCCce-EEEECCCcHHHHHHHHH
Confidence 47777877777787 66654322110 00000110 011111112333333333223467 78888776666666666
Q ss_pred HHhcCCCEEEEcC
Q 028115 78 YSKVGVPFVMGTT 90 (213)
Q Consensus 78 ~~~~g~~~ViGTT 90 (213)
+...|.=+.+|.+
T Consensus 244 l~~~G~iv~~G~~ 256 (345)
T cd08293 244 MNENSHIILCGQI 256 (345)
T ss_pred hccCCEEEEEeee
Confidence 6666665666643
No 292
>KOG1198 consensus Zinc-binding oxidoreductase [Energy production and conversion; General function prediction only]
Probab=49.16 E-value=29 Score=31.90 Aligned_cols=34 Identities=29% Similarity=0.327 Sum_probs=19.4
Q ss_pred CCCEEEEEcCChHHHHHHHHHHHhcCCCEEEEcCCC
Q 028115 57 YPNMIVVDYTVPAAVNGNAELYSKVGVPFVMGTTGG 92 (213)
Q Consensus 57 ~~d~VvIDFS~p~~~~~~~~~~~~~g~~~ViGTTG~ 92 (213)
.+| -+||+..|+.+....+.. ..|..+|+-+-|-
T Consensus 202 GAd-~vvdy~~~~~~e~~kk~~-~~~~DvVlD~vg~ 235 (347)
T KOG1198|consen 202 GAD-EVVDYKDENVVELIKKYT-GKGVDVVLDCVGG 235 (347)
T ss_pred CCc-EeecCCCHHHHHHHHhhc-CCCccEEEECCCC
Confidence 345 456666655555555555 5566666655554
No 293
>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional
Probab=49.11 E-value=1.2e+02 Score=26.04 Aligned_cols=71 Identities=13% Similarity=0.123 Sum_probs=44.7
Q ss_pred ChHHHHHHHHhCCCeEEEEecCCCccccccccccCceeEeecCCchhHHHhhhhcC--CCCEEEEEcCChHHHHHHHHHH
Q 028115 1 MGKAVIKAADAAGLELVPVSFGTEEESGQKVEVCGKEIQVHGLSDRESVLASVFDK--YPNMIVVDYTVPAAVNGNAELY 78 (213)
Q Consensus 1 MG~~i~~~~~~~~~elv~~~~~~~~~~g~~~~~~~~~v~i~~~~~~~~~l~~~~~~--~~d~VvIDFS~p~~~~~~~~~~ 78 (213)
+|+++++.+.+.|..|+.. ++.. ..++.++++... .+-.+..|++.++.+...++.+
T Consensus 20 IG~aia~~la~~G~~vil~-~r~~--------------------~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~ 78 (262)
T PRK07984 20 IAYGIAQAMHREGAELAFT-YQND--------------------KLKGRVEEFAAQLGSDIVLPCDVAEDASIDAMFAEL 78 (262)
T ss_pred HHHHHHHHHHHCCCEEEEE-ecch--------------------hHHHHHHHHHhccCCceEeecCCCCHHHHHHHHHHH
Confidence 4788888888888877632 2211 011112222111 1122568999999999999988
Q ss_pred Hhc--CCCEEEEcCCC
Q 028115 79 SKV--GVPFVMGTTGG 92 (213)
Q Consensus 79 ~~~--g~~~ViGTTG~ 92 (213)
.+. ++.++|-..|+
T Consensus 79 ~~~~g~iD~linnAg~ 94 (262)
T PRK07984 79 GKVWPKFDGFVHSIGF 94 (262)
T ss_pred HhhcCCCCEEEECCcc
Confidence 763 47899988885
No 294
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=49.09 E-value=71 Score=27.54 Aligned_cols=20 Identities=25% Similarity=0.366 Sum_probs=17.7
Q ss_pred hHHHHHHHHhCCCeEEEEec
Q 028115 2 GKAVIKAADAAGLELVPVSF 21 (213)
Q Consensus 2 G~~i~~~~~~~~~elv~~~~ 21 (213)
|+.|.+.+..+|+|+++.+-
T Consensus 13 Gs~i~~EA~~RGHeVTAivR 32 (211)
T COG2910 13 GSRILKEALKRGHEVTAIVR 32 (211)
T ss_pred HHHHHHHHHhCCCeeEEEEe
Confidence 88999999999999998654
No 295
>COG2984 ABC-type uncharacterized transport system, periplasmic component [General function prediction only]
Probab=49.05 E-value=1.4e+02 Score=27.53 Aligned_cols=93 Identities=17% Similarity=0.250 Sum_probs=0.0
Q ss_pred cCCchhHHHhhhhcCCCCEEEEEcCChHHHHHHHHHHHhcCCCEEE--------------------EcCCCC-----HHH
Q 028115 42 GLSDRESVLASVFDKYPNMIVVDYTVPAAVNGNAELYSKVGVPFVM--------------------GTTGGD-----RVR 96 (213)
Q Consensus 42 ~~~~~~~~l~~~~~~~~d~VvIDFS~p~~~~~~~~~~~~~g~~~Vi--------------------GTTG~~-----~~~ 96 (213)
++....+...++....+| |+|=-++|.+ ..+..+.+. +|+|+ ..||++ .++
T Consensus 73 ~~~~a~~iarql~~~~~d-viv~i~tp~A--q~~~s~~~~-iPVV~aavtd~v~a~Lv~~~~~pg~NvTGvsD~~~v~q~ 148 (322)
T COG2984 73 DLGTAAQIARQLVGDKPD-VIVAIATPAA--QALVSATKT-IPVVFAAVTDPVGAKLVKSLEQPGGNVTGVSDLLPVAQQ 148 (322)
T ss_pred ChHHHHHHHHHhhcCCCc-EEEecCCHHH--HHHHHhcCC-CCEEEEccCchhhccCCccccCCCCceeecCCcchHHHH
Q ss_pred HHHHHHc---cC-CcEEEccChhHHHHHHHHHHHHHHHhcCCCCCCCcEEEEec
Q 028115 97 LHETIEN---SN-VYAVISPQMGKQVVAFLAAMEIMAEQFPGAFSGYSLQVLES 146 (213)
Q Consensus 97 ~~~~~~~---~~-~~~v~a~N~SlGv~ll~~l~~~aa~~l~~~~~~~dieI~E~ 146 (213)
++.+.+. .+ ++++|+|+..--+.++.++-+.|.+. .++++|.
T Consensus 149 i~lik~~~Pnak~Igv~Y~p~E~ns~~l~eelk~~A~~~--------Gl~vve~ 194 (322)
T COG2984 149 IELIKALLPNAKSIGVLYNPGEANSVSLVEELKKEARKA--------GLEVVEA 194 (322)
T ss_pred HHHHHHhCCCCeeEEEEeCCCCcccHHHHHHHHHHHHHC--------CCEEEEE
No 296
>PTZ00386 formyl tetrahydrofolate synthetase; Provisional
Probab=48.98 E-value=53 Score=32.73 Aligned_cols=101 Identities=16% Similarity=0.184 Sum_probs=64.5
Q ss_pred HHHHHHHHHHhcCCCEEEEcCCCC---HHHHHH---HHH-ccC-CcEEEccChhHHHHHHHHHHHHHHHhcC---CCCC-
Q 028115 70 AVNGNAELYSKVGVPFVMGTTGGD---RVRLHE---TIE-NSN-VYAVISPQMGKQVVAFLAAMEIMAEQFP---GAFS- 137 (213)
Q Consensus 70 ~~~~~~~~~~~~g~~~ViGTTG~~---~~~~~~---~~~-~~~-~~~v~a~N~SlGv~ll~~l~~~aa~~l~---~~~~- 137 (213)
.+..|++-+.++|+|+|+.-.-|. ++|++. +++ +.+ +++++|.-|+-|-.=-..|++...+... ..|.
T Consensus 425 NL~~Hien~~~fgvpvVVAIN~F~tDT~~Ei~~i~~~~~~~~ga~~~~~s~~~a~GG~Ga~eLA~~Vv~a~~~~~s~fk~ 504 (625)
T PTZ00386 425 NLQRHIQNIRKFGVPVVVALNKFSTDTDAELELVKELALQEGGAADVVVTDHWAKGGAGAVDLAQALIRVTENVPSNFKL 504 (625)
T ss_pred HHHHHHHHHHHcCCCeEEEecCCCCCCHHHHHHHHHHHHHhcCCccEEEechhhccchhHHHHHHHHHHHHhcCCCCCcc
Confidence 355678889999999999999995 455544 455 556 6899999999986665666655544331 1121
Q ss_pred CCcEEE----------EeccCCCCCCchHHHHHHHHHHHhcCC
Q 028115 138 GYSLQV----------LESHQAGKLDTSGTAKAVISCFQKLGV 170 (213)
Q Consensus 138 ~~dieI----------~E~HH~~K~DaSGTA~~la~~~~~~~~ 170 (213)
-|+.+- .|.-....++-|--|.+=.+.++++|+
T Consensus 505 LYd~~~sI~eKIetIAkeIYGA~gVefS~~AkkqLk~ie~~G~ 547 (625)
T PTZ00386 505 LYPLDASLKEKIETICKEIYGAAGVEYLNDADEKLEDFERMGY 547 (625)
T ss_pred cCCCCCCHHHHHHHHHHHccCCCcEEECHHHHHHHHHHHHcCC
Confidence 244322 234555555556667765556666664
No 297
>PRK08589 short chain dehydrogenase; Validated
Probab=48.95 E-value=1.4e+02 Score=25.41 Aligned_cols=71 Identities=17% Similarity=0.127 Sum_probs=44.3
Q ss_pred ChHHHHHHHHhCCCeEEEEecCCCccccccccccCceeEeecCCchhHHHhhhhcC--CCCEEEEEcCChHHHHHHHHHH
Q 028115 1 MGKAVIKAADAAGLELVPVSFGTEEESGQKVEVCGKEIQVHGLSDRESVLASVFDK--YPNMIVVDYTVPAAVNGNAELY 78 (213)
Q Consensus 1 MG~~i~~~~~~~~~elv~~~~~~~~~~g~~~~~~~~~v~i~~~~~~~~~l~~~~~~--~~d~VvIDFS~p~~~~~~~~~~ 78 (213)
+|+.+++.+.+.|..++.. ++.. .+++...++... +...+..|++.++.+...++.+
T Consensus 18 IG~aia~~l~~~G~~vi~~-~r~~--------------------~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~ 76 (272)
T PRK08589 18 IGQASAIALAQEGAYVLAV-DIAE--------------------AVSETVDKIKSNGGKAKAYHVDISDEQQVKDFASEI 76 (272)
T ss_pred HHHHHHHHHHHCCCEEEEE-eCcH--------------------HHHHHHHHHHhcCCeEEEEEeecCCHHHHHHHHHHH
Confidence 4788888888888887753 2211 111222222111 1233679999999999998888
Q ss_pred Hhc--CCCEEEEcCCC
Q 028115 79 SKV--GVPFVMGTTGG 92 (213)
Q Consensus 79 ~~~--g~~~ViGTTG~ 92 (213)
.+. ++.++|-..|.
T Consensus 77 ~~~~g~id~li~~Ag~ 92 (272)
T PRK08589 77 KEQFGRVDVLFNNAGV 92 (272)
T ss_pred HHHcCCcCEEEECCCC
Confidence 763 46778776664
No 298
>PRK07877 hypothetical protein; Provisional
Probab=48.94 E-value=75 Score=32.31 Aligned_cols=33 Identities=21% Similarity=0.170 Sum_probs=25.7
Q ss_pred CCCEEEEEcCChHHHHH-HHHHHHhcCCCEEEEcC
Q 028115 57 YPNMIVVDYTVPAAVNG-NAELYSKVGVPFVMGTT 90 (213)
Q Consensus 57 ~~d~VvIDFS~p~~~~~-~~~~~~~~g~~~ViGTT 90 (213)
.+| +|||-+.--.+.- .-++|.++|+|+|.|+.
T Consensus 196 ~~D-lVvD~~D~~~~R~~ln~~a~~~~iP~i~~~~ 229 (722)
T PRK07877 196 GLD-VVVEECDSLDVKVLLREAARARRIPVLMATS 229 (722)
T ss_pred CCC-EEEECCCCHHHHHHHHHHHHHcCCCEEEEcC
Confidence 578 8999886544444 45789999999999984
No 299
>cd01137 PsaA Metal binding protein PsaA. These proteins have been shown to function as initial receptors in ABC transport of Mn2+ and as surface adhesins in some eubacterial species. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=48.86 E-value=77 Score=27.97 Aligned_cols=37 Identities=16% Similarity=0.112 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHhcCCCEEEEcCCCCHHHHHHHHHccC
Q 028115 69 AAVNGNAELYSKVGVPFVMGTTGGDRVRLHETIENSN 105 (213)
Q Consensus 69 ~~~~~~~~~~~~~g~~~ViGTTG~~~~~~~~~~~~~~ 105 (213)
..+.+.++...++++++|.--.+++....+.+++..+
T Consensus 213 ~~l~~l~~~ik~~~v~~if~e~~~~~~~~~~ia~~~g 249 (287)
T cd01137 213 KQVATLIEQVKKEKVPAVFVESTVNDRLMKQVAKETG 249 (287)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCCCChHHHHHHHHHhC
Confidence 3344444444444444444444444333334443333
No 300
>PRK12937 short chain dehydrogenase; Provisional
Probab=48.71 E-value=98 Score=25.32 Aligned_cols=73 Identities=15% Similarity=0.190 Sum_probs=44.3
Q ss_pred ChHHHHHHHHhCCCeEEEEecCCCccccccccccCceeEeecCCchhHHHhhhhcCC--CCEEEEEcCChHHHHHHHHHH
Q 028115 1 MGKAVIKAADAAGLELVPVSFGTEEESGQKVEVCGKEIQVHGLSDRESVLASVFDKY--PNMIVVDYTVPAAVNGNAELY 78 (213)
Q Consensus 1 MG~~i~~~~~~~~~elv~~~~~~~~~~g~~~~~~~~~v~i~~~~~~~~~l~~~~~~~--~d~VvIDFS~p~~~~~~~~~~ 78 (213)
.|+.+++.+.+.|.+++....+.+. ..++..+++.... ...+-+|++.++.+.+.++.+
T Consensus 17 iG~~la~~l~~~g~~v~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~ 77 (245)
T PRK12937 17 IGAAIARRLAADGFAVAVNYAGSAA-------------------AADELVAEIEAAGGRAIAVQADVADAAAVTRLFDAA 77 (245)
T ss_pred HHHHHHHHHHHCCCEEEEecCCCHH-------------------HHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHH
Confidence 3788888888888887643222211 1111111111111 223567999999999988877
Q ss_pred Hhc--CCCEEEEcCCC
Q 028115 79 SKV--GVPFVMGTTGG 92 (213)
Q Consensus 79 ~~~--g~~~ViGTTG~ 92 (213)
.+. ++.+|+-..|.
T Consensus 78 ~~~~~~id~vi~~ag~ 93 (245)
T PRK12937 78 ETAFGRIDVLVNNAGV 93 (245)
T ss_pred HHHcCCCCEEEECCCC
Confidence 653 57788887774
No 301
>cd06322 PBP1_ABC_sugar_binding_like_12 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=48.64 E-value=1.5e+02 Score=24.37 Aligned_cols=39 Identities=15% Similarity=0.232 Sum_probs=26.1
Q ss_pred HhhhhcCCCCEEEEEcCChHHHHHHHHHHHhcCCCEEEE
Q 028115 50 LASVFDKYPNMIVVDYTVPAAVNGNAELYSKVGVPFVMG 88 (213)
Q Consensus 50 l~~~~~~~~d~VvIDFS~p~~~~~~~~~~~~~g~~~ViG 88 (213)
+..+....+|.++|--+.+....+.++.+.+.|+|+|.-
T Consensus 48 ~~~~~~~~vdgiii~~~~~~~~~~~~~~~~~~~ipvV~~ 86 (267)
T cd06322 48 VEDFITKKVDAIVLSPVDSKGIRAAIAKAKKAGIPVITV 86 (267)
T ss_pred HHHHHHcCCCEEEEcCCChhhhHHHHHHHHHCCCCEEEE
Confidence 333344578855554444565677788888999998765
No 302
>cd01301 rDP_like renal dipeptidase (rDP), best studied in mammals and also called membrane or microsomal dipeptidase, is a membrane-bound glycoprotein hydrolyzing dipeptides and is involved in hydrolytic metabolism of penem and carbapenem beta-lactam antibiotics. Although the biological function of the enzyme is still unknown, it has been suggested to play a role in the renal glutathione metabolism.
Probab=48.56 E-value=56 Score=29.50 Aligned_cols=79 Identities=8% Similarity=0.143 Sum_probs=50.4
Q ss_pred HHHhhhhcCCCCEEEEEcCCh--HHHHHHHHHHHhcCCCEEEEcCC----------CCHHHHHHHHHccC-CcEEEccCh
Q 028115 48 SVLASVFDKYPNMIVVDYTVP--AAVNGNAELYSKVGVPFVMGTTG----------GDRVRLHETIENSN-VYAVISPQM 114 (213)
Q Consensus 48 ~~l~~~~~~~~d~VvIDFS~p--~~~~~~~~~~~~~g~~~ViGTTG----------~~~~~~~~~~~~~~-~~~v~a~N~ 114 (213)
++++++. .-. ++||-||- ..+.+.++.+ ..|+|.-=|+ +++++++++++..+ +.+.+.|.|
T Consensus 158 ~vv~~mn--~lG-miiDvSH~s~~~~~dv~~~s---~~PviaSHsn~ral~~h~RNltD~~i~~ia~~GGvigi~~~~~f 231 (309)
T cd01301 158 ELVREMN--RLG-IIIDLSHLSERTFWDVLDIS---NAPVIASHSNARALCDHPRNLTDAQLKAIAETGGVIGVNFYPAF 231 (309)
T ss_pred HHHHHHH--HcC-CEEEcCCCCHHHHHHHHHhc---CCCEEEeccChHHhcCCCCCCCHHHHHHHHHcCCEEEEeeeHHH
Confidence 4455553 245 89999986 4466666654 7898876666 46889999999888 777666555
Q ss_pred h-----HHHHHHHHHHHHHHHhc
Q 028115 115 G-----KQVVAFLAAMEIMAEQF 132 (213)
Q Consensus 115 S-----lGv~ll~~l~~~aa~~l 132 (213)
- -.+.-+.+-++.+.+..
T Consensus 232 l~~~~~~~~~~~~~hi~~i~~l~ 254 (309)
T cd01301 232 LSPGADATLDDVVRHIDYIVDLI 254 (309)
T ss_pred hCCCCCCCHHHHHHHHHHHHHhc
Confidence 2 22333444445555443
No 303
>PRK10653 D-ribose transporter subunit RbsB; Provisional
Probab=48.46 E-value=88 Score=26.70 Aligned_cols=33 Identities=12% Similarity=0.305 Sum_probs=22.3
Q ss_pred cCCCCEEEEEcCChHHHHHHHHHHHhcCCCEEE
Q 028115 55 DKYPNMIVVDYTVPAAVNGNAELYSKVGVPFVM 87 (213)
Q Consensus 55 ~~~~d~VvIDFS~p~~~~~~~~~~~~~g~~~Vi 87 (213)
...+|.+++.-+.++.+.+.++.+.+.|+|+|.
T Consensus 80 ~~~~dgiii~~~~~~~~~~~l~~~~~~~ipvV~ 112 (295)
T PRK10653 80 VRGTKILLINPTDSDAVGNAVKMANQANIPVIT 112 (295)
T ss_pred HcCCCEEEEcCCChHHHHHHHHHHHHCCCCEEE
Confidence 346784455434445556778888899999885
No 304
>cd06357 PBP1_AmiC Periplasmic binding domain of amidase (AmiC) that belongs to the type I periplasmic binding fold protein family. This group includes the periplasmic binding domain of amidase (AmiC) that belongs to the type I periplasmic binding fold protein family. AmiC controls expression of the amidase operon by the ligand-triggered conformational switch. In the absence of ligand or presence of butyramide (repressor), AmiC (the ligand sensor and negative regulator) adopts an open conformation and inhibits the transcription antitermination function of AmiR by direct protein-protein interaction. In the presence of inducing ligands such as acetamide, AmiC adopts a closed conformation which disrupts a silencing AmiC-AmiR complex and the expression of amidase and other genes of the operon are induced.
Probab=48.42 E-value=1.7e+02 Score=26.00 Aligned_cols=57 Identities=9% Similarity=0.156 Sum_probs=38.0
Q ss_pred CCchhHHHhhhhcCCCCEEEEEcCChHHHHHHHHHHHhcCCC---EEEEcCCCCHHHHHHH
Q 028115 43 LSDRESVLASVFDKYPNMIVVDYTVPAAVNGNAELYSKVGVP---FVMGTTGGDRVRLHET 100 (213)
Q Consensus 43 ~~~~~~~l~~~~~~~~d~VvIDFS~p~~~~~~~~~~~~~g~~---~ViGTTG~~~~~~~~~ 100 (213)
..|+...+.++...+|| +|+-...+......++.+.+.|.. +.+++.+.....+.++
T Consensus 175 ~~d~s~~v~~l~~~~pd-~V~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~ 234 (360)
T cd06357 175 DEDFARIVEEIREAQPD-FIFSTLVGQSSYAFYRAYAAAGFDPARMPIASLTTSEAEVAAM 234 (360)
T ss_pred hhhHHHHHHHHHHcCCC-EEEEeCCCCChHHHHHHHHHcCCCccCceeEEeeccHHHHhhc
Confidence 35777777777777899 566566777788889999998875 3344444444444333
No 305
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=48.36 E-value=1.7e+02 Score=24.87 Aligned_cols=121 Identities=15% Similarity=0.093 Sum_probs=64.2
Q ss_pred ChHHHHHHHHhCCCeEEEEecCCCcccccccc--ccCceeEeecCCchhHHHhhhhcCCCCEEEEEcCChH-HHHHHHHH
Q 028115 1 MGKAVIKAADAAGLELVPVSFGTEEESGQKVE--VCGKEIQVHGLSDRESVLASVFDKYPNMIVVDYTVPA-AVNGNAEL 77 (213)
Q Consensus 1 MG~~i~~~~~~~~~elv~~~~~~~~~~g~~~~--~~~~~v~i~~~~~~~~~l~~~~~~~~d~VvIDFS~p~-~~~~~~~~ 77 (213)
+|+.+++.+.+.|++++.. +..+...-+-.. .....+.. ...+.+ +|.+.--.++|.+++....-+ .+.-..-.
T Consensus 11 vG~~va~~L~~~g~~Vv~I-d~d~~~~~~~~~~~~~~~~v~g-d~t~~~-~L~~agi~~aD~vva~t~~d~~N~i~~~la 87 (225)
T COG0569 11 VGRSVARELSEEGHNVVLI-DRDEERVEEFLADELDTHVVIG-DATDED-VLEEAGIDDADAVVAATGNDEVNSVLALLA 87 (225)
T ss_pred HHHHHHHHHHhCCCceEEE-EcCHHHHHHHhhhhcceEEEEe-cCCCHH-HHHhcCCCcCCEEEEeeCCCHHHHHHHHHH
Confidence 5889999999999998864 433211111000 11111222 123333 355543446774455555522 33333334
Q ss_pred HHhcCCCEEEEcCCCCHHHHHHHHHccCCcEEEccChhHHHHHHHHHHH
Q 028115 78 YSKVGVPFVMGTTGGDRVRLHETIENSNVYAVISPQMGKQVVAFLAAME 126 (213)
Q Consensus 78 ~~~~g~~~ViGTTG~~~~~~~~~~~~~~~~~v~a~N~SlGv~ll~~l~~ 126 (213)
+.++|+|-|+...-= .+..+.+ +.-++-.+++|=...|..+...+..
T Consensus 88 ~~~~gv~~viar~~~-~~~~~~~-~~~g~~~ii~Pe~~~~~~l~~~i~~ 134 (225)
T COG0569 88 LKEFGVPRVIARARN-PEHEKVL-EKLGADVIISPEKLAAKRLARLIVT 134 (225)
T ss_pred HHhcCCCcEEEEecC-HHHHHHH-HHcCCcEEECHHHHHHHHHHHHhcC
Confidence 444899999977643 2222233 2334667889888888766655433
No 306
>COG0027 PurT Formate-dependent phosphoribosylglycinamide formyltransferase (GAR transformylase) [Nucleotide transport and metabolism]
Probab=48.32 E-value=1.2e+02 Score=28.32 Aligned_cols=108 Identities=18% Similarity=0.201 Sum_probs=56.9
Q ss_pred ChHHHHHHHHhCCCeEEEEecCCCccccccccccCceeEe--ecCCchhHHHhhhhcCCCCEEEEEcCChHHHHHHHHHH
Q 028115 1 MGKAVIKAADAAGLELVPVSFGTEEESGQKVEVCGKEIQV--HGLSDRESVLASVFDKYPNMIVVDYTVPAAVNGNAELY 78 (213)
Q Consensus 1 MG~~i~~~~~~~~~elv~~~~~~~~~~g~~~~~~~~~v~i--~~~~~~~~~l~~~~~~~~d~VvIDFS~p~~~~~~~~~~ 78 (213)
.|++++-+++.-|+|+++ +|+......+- ++...+.+ .+.+.+.++++ +.+|| -||-=.-.=++..++ ..
T Consensus 23 LGKEvaIe~QRLG~eViA-VDrY~~APAmq--VAhrs~Vi~MlD~~al~avv~---rekPd-~IVpEiEAI~td~L~-el 94 (394)
T COG0027 23 LGKEVAIEAQRLGVEVIA-VDRYANAPAMQ--VAHRSYVIDMLDGDALRAVVE---REKPD-YIVPEIEAIATDALV-EL 94 (394)
T ss_pred cchHHHHHHHhcCCEEEE-ecCcCCChhhh--hhhheeeeeccCHHHHHHHHH---hhCCC-eeeehhhhhhHHHHH-HH
Confidence 377888777788999986 56543222221 22222222 22233444443 35788 444322222222222 22
Q ss_pred HhcCCCEEE------------------------EcCCC----CHHHHHHHHHccCCcEEEccChhH
Q 028115 79 SKVGVPFVM------------------------GTTGG----DRVRLHETIENSNVYAVISPQMGK 116 (213)
Q Consensus 79 ~~~g~~~Vi------------------------GTTG~----~~~~~~~~~~~~~~~~v~a~N~Sl 116 (213)
.+.|..+|= =|+.| +.+++++.++.-+.|+++.|=||-
T Consensus 95 E~~G~~VVP~ArAt~ltMnRegiRrlAAeeLglpTs~Y~fa~s~~e~~~a~~~iGfPcvvKPvMSS 160 (394)
T COG0027 95 EEEGYTVVPNARATKLTMNREGIRRLAAEELGLPTSKYRFADSLEELRAAVEKIGFPCVVKPVMSS 160 (394)
T ss_pred HhCCceEccchHHHHhhhcHHHHHHHHHHHhCCCCccccccccHHHHHHHHHHcCCCeeccccccc
Confidence 333433221 14555 356777778888899999998874
No 307
>PRK08328 hypothetical protein; Provisional
Probab=48.31 E-value=39 Score=28.92 Aligned_cols=33 Identities=21% Similarity=0.232 Sum_probs=22.0
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHhcCCCEEEEcC
Q 028115 57 YPNMIVVDYT-VPAAVNGNAELYSKVGVPFVMGTT 90 (213)
Q Consensus 57 ~~d~VvIDFS-~p~~~~~~~~~~~~~g~~~ViGTT 90 (213)
..| +|||-+ +++.-...-++|.++++|+|.|.+
T Consensus 118 ~~D-~Vid~~d~~~~r~~l~~~~~~~~ip~i~g~~ 151 (231)
T PRK08328 118 GVD-VIVDCLDNFETRYLLDDYAHKKGIPLVHGAV 151 (231)
T ss_pred cCC-EEEECCCCHHHHHHHHHHHHHcCCCEEEEee
Confidence 567 788865 344444445678888888887554
No 308
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=48.29 E-value=69 Score=28.53 Aligned_cols=72 Identities=18% Similarity=0.230 Sum_probs=47.4
Q ss_pred ChHHHHHHHHhCCCeEEEEecCCCccccccccccCceeEeecCCchhHHHhhhhc---CCCCEEEEEcCChHHHHHHHHH
Q 028115 1 MGKAVIKAADAAGLELVPVSFGTEEESGQKVEVCGKEIQVHGLSDRESVLASVFD---KYPNMIVVDYTVPAAVNGNAEL 77 (213)
Q Consensus 1 MG~~i~~~~~~~~~elv~~~~~~~~~~g~~~~~~~~~v~i~~~~~~~~~l~~~~~---~~~d~VvIDFS~p~~~~~~~~~ 77 (213)
.|+++++....+|+.|+-. .+.. +.+++..+++.+ ..++++-+|.|.|+.+......
T Consensus 18 IG~~~A~~lA~~g~~liLv-aR~~-------------------~kL~~la~~l~~~~~v~v~vi~~DLs~~~~~~~l~~~ 77 (265)
T COG0300 18 IGAELAKQLARRGYNLILV-ARRE-------------------DKLEALAKELEDKTGVEVEVIPADLSDPEALERLEDE 77 (265)
T ss_pred HHHHHHHHHHHCCCEEEEE-eCcH-------------------HHHHHHHHHHHHhhCceEEEEECcCCChhHHHHHHHH
Confidence 3889999988888887742 2221 122222223222 1245568999999999999988
Q ss_pred HHhc--CCCEEEEcCCC
Q 028115 78 YSKV--GVPFVMGTTGG 92 (213)
Q Consensus 78 ~~~~--g~~~ViGTTG~ 92 (213)
.... .+.+.|=--||
T Consensus 78 l~~~~~~IdvLVNNAG~ 94 (265)
T COG0300 78 LKERGGPIDVLVNNAGF 94 (265)
T ss_pred HHhcCCcccEEEECCCc
Confidence 8887 68888866664
No 309
>PLN02237 glyceraldehyde-3-phosphate dehydrogenase B
Probab=48.14 E-value=99 Score=29.68 Aligned_cols=88 Identities=19% Similarity=0.129 Sum_probs=54.9
Q ss_pred ChHHHHHHHH-h--CCCeEEEEecCCC---------------cc---c----cccccccCceeEeecCCchhHHHhhhhc
Q 028115 1 MGKAVIKAAD-A--AGLELVPVSFGTE---------------EE---S----GQKVEVCGKEIQVHGLSDRESVLASVFD 55 (213)
Q Consensus 1 MG~~i~~~~~-~--~~~elv~~~~~~~---------------~~---~----g~~~~~~~~~v~i~~~~~~~~~l~~~~~ 55 (213)
+||.+.|++. . +++|+|+.=+... .+ + +..+.+.|..+.+....|+.+. ...+
T Consensus 86 IGR~vlR~~~~~~~~~ievVaINd~~~~~~~ayLlkyDS~hG~f~~~v~~~~~~~L~v~Gk~I~V~~~~dp~~l--~W~~ 163 (442)
T PLN02237 86 IGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSMLGTFKADVKIVDDETISVDGKPIKVVSNRDPLKL--PWAE 163 (442)
T ss_pred HHHHHHHHHHHccCCCeEEEEECCCCCHHHHHHHHccccCCCCcCCceEECCCCEEEECCEEEEEEEcCCchhC--Chhh
Confidence 4899999865 4 5799998644110 00 0 1112334445666543343331 1222
Q ss_pred CCCCEEEEEcCChHHHHHHHHHHHhcCCCEEEEcCCC
Q 028115 56 KYPNMIVVDYTVPAAVNGNAELYSKVGVPFVMGTTGG 92 (213)
Q Consensus 56 ~~~d~VvIDFS~p~~~~~~~~~~~~~g~~~ViGTTG~ 92 (213)
...| ++|+.|-.....+.....++.|...|+=+ .+
T Consensus 164 ~gVD-iViE~TG~f~s~e~a~~hl~aGAkkV~iS-AP 198 (442)
T PLN02237 164 LGID-IVIEGTGVFVDGPGAGKHIQAGAKKVIIT-AP 198 (442)
T ss_pred cCCC-EEEEccChhhhHHHHHHHHhCCCEEEEEC-CC
Confidence 4678 89999988888899999999998877766 44
No 310
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=48.14 E-value=1.4e+02 Score=23.78 Aligned_cols=93 Identities=15% Similarity=0.226 Sum_probs=52.0
Q ss_pred hHHHHHHHH-hCCCeEEEEecCCCccccccccccCceeEeecCCchhHHHhhhhcCCCCEEEEEc---CChHHHHHHHHH
Q 028115 2 GKAVIKAAD-AAGLELVPVSFGTEEESGQKVEVCGKEIQVHGLSDRESVLASVFDKYPNMIVVDY---TVPAAVNGNAEL 77 (213)
Q Consensus 2 G~~i~~~~~-~~~~elv~~~~~~~~~~g~~~~~~~~~v~i~~~~~~~~~l~~~~~~~~d~VvIDF---S~p~~~~~~~~~ 77 (213)
|+.++..+. +.|++++ ++|.+. ..++.++...+.++|.|.+=. ++-..+.+.++.
T Consensus 17 Gk~iv~~~l~~~GfeVi--------~LG~~v-------------~~e~~v~aa~~~~adiVglS~l~~~~~~~~~~~~~~ 75 (134)
T TIGR01501 17 GNKILDHAFTNAGFNVV--------NLGVLS-------------PQEEFIKAAIETKADAILVSSLYGHGEIDCKGLRQK 75 (134)
T ss_pred hHHHHHHHHHHCCCEEE--------ECCCCC-------------CHHHHHHHHHHcCCCEEEEecccccCHHHHHHHHHH
Confidence 555666555 7888887 222221 234444444556788444332 444557777778
Q ss_pred HHhcC---CCEEEEcCC-CCHHHHH----HHHHccCCcEEEccChhH
Q 028115 78 YSKVG---VPFVMGTTG-GDRVRLH----ETIENSNVYAVISPQMGK 116 (213)
Q Consensus 78 ~~~~g---~~~ViGTTG-~~~~~~~----~~~~~~~~~~v~a~N~Sl 116 (213)
+.+.| +++++|=+. ..+++.. ++ ++.++--++.|-.++
T Consensus 76 l~~~gl~~~~vivGG~~vi~~~d~~~~~~~l-~~~Gv~~vF~pgt~~ 121 (134)
T TIGR01501 76 CDEAGLEGILLYVGGNLVVGKQDFPDVEKRF-KEMGFDRVFAPGTPP 121 (134)
T ss_pred HHHCCCCCCEEEecCCcCcChhhhHHHHHHH-HHcCCCEEECcCCCH
Confidence 77775 456566543 3333322 33 345577788877765
No 311
>cd06311 PBP1_ABC_sugar_binding_like_3 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=48.09 E-value=1.2e+02 Score=25.24 Aligned_cols=38 Identities=13% Similarity=0.110 Sum_probs=26.3
Q ss_pred HhhhhcCCCCEEEEEcCChHHHHHHHHHHHhcCCCEEE
Q 028115 50 LASVFDKYPNMIVVDYTVPAAVNGNAELYSKVGVPFVM 87 (213)
Q Consensus 50 l~~~~~~~~d~VvIDFS~p~~~~~~~~~~~~~g~~~Vi 87 (213)
++.+....+|.++|.-..++.+.+.++.+.+.|+|+|.
T Consensus 53 ~~~l~~~~vDgiii~~~~~~~~~~~i~~~~~~gIpvV~ 90 (274)
T cd06311 53 QDLLINRKIDALVILPFESAPLTQPVAKAKKAGIFVVV 90 (274)
T ss_pred HHHHHHcCCCEEEEeCCCchhhHHHHHHHHHCCCeEEE
Confidence 33344456885555444567777888889999999886
No 312
>TIGR02461 osmo_MPG_phos mannosyl-3-phosphoglycerate phosphatase. Members of this family are mannosyl-3-phosphoglycerate phosphatase (EC 3.1.3.70). It acts sequentially after mannosyl-3-phosphoglycerate synthase (EC 2.4.1.217) in a two-step pathway of biosynthesis of the compatible solute mannosylglycerate, a typical osmolyte of thermophiles.
Probab=48.00 E-value=52 Score=27.88 Aligned_cols=35 Identities=17% Similarity=0.185 Sum_probs=26.3
Q ss_pred HHHHHHHHHHhcCCCEEEEcCCCCHHHHHHHHHccC
Q 028115 70 AVNGNAELYSKVGVPFVMGTTGGDRVRLHETIENSN 105 (213)
Q Consensus 70 ~~~~~~~~~~~~g~~~ViGTTG~~~~~~~~~~~~~~ 105 (213)
...+.++.+.++|+++|+. ||=+..++..+.+.-+
T Consensus 19 ~~~~ai~~l~~~G~~~vi~-TgR~~~~~~~~~~~lg 53 (225)
T TIGR02461 19 PAREALEELKDLGFPIVFV-SSKTRAEQEYYREELG 53 (225)
T ss_pred HHHHHHHHHHHCCCEEEEE-eCCCHHHHHHHHHHcC
Confidence 4788999999999999998 6777666655544433
No 313
>PRK07109 short chain dehydrogenase; Provisional
Probab=48.00 E-value=1e+02 Score=27.51 Aligned_cols=72 Identities=19% Similarity=0.164 Sum_probs=45.1
Q ss_pred ChHHHHHHHHhCCCeEEEEecCCCccccccccccCceeEeecCCchhHHHhhhhcCCCC--EEEEEcCChHHHHHHHHHH
Q 028115 1 MGKAVIKAADAAGLELVPVSFGTEEESGQKVEVCGKEIQVHGLSDRESVLASVFDKYPN--MIVVDYTVPAAVNGNAELY 78 (213)
Q Consensus 1 MG~~i~~~~~~~~~elv~~~~~~~~~~g~~~~~~~~~v~i~~~~~~~~~l~~~~~~~~d--~VvIDFS~p~~~~~~~~~~ 78 (213)
+|+.+++.+.+.|.+++.. ++... .+++..+++.....+ .+..|++.++.+...++.+
T Consensus 20 IG~~la~~la~~G~~Vvl~-~R~~~-------------------~l~~~~~~l~~~g~~~~~v~~Dv~d~~~v~~~~~~~ 79 (334)
T PRK07109 20 VGRATARAFARRGAKVVLL-ARGEE-------------------GLEALAAEIRAAGGEALAVVADVADAEAVQAAADRA 79 (334)
T ss_pred HHHHHHHHHHHCCCEEEEE-ECCHH-------------------HHHHHHHHHHHcCCcEEEEEecCCCHHHHHHHHHHH
Confidence 4788888888888887643 33221 112222222111223 2568999999999988877
Q ss_pred Hhc--CCCEEEEcCCC
Q 028115 79 SKV--GVPFVMGTTGG 92 (213)
Q Consensus 79 ~~~--g~~~ViGTTG~ 92 (213)
.+. ++.++|-..|.
T Consensus 80 ~~~~g~iD~lInnAg~ 95 (334)
T PRK07109 80 EEELGPIDTWVNNAMV 95 (334)
T ss_pred HHHCCCCCEEEECCCc
Confidence 653 57888887774
No 314
>PRK07063 short chain dehydrogenase; Provisional
Probab=47.81 E-value=88 Score=26.09 Aligned_cols=72 Identities=15% Similarity=0.104 Sum_probs=45.0
Q ss_pred ChHHHHHHHHhCCCeEEEEecCCCccccccccccCceeEeecCCchhHHHhhhhc----CCCCEEEEEcCChHHHHHHHH
Q 028115 1 MGKAVIKAADAAGLELVPVSFGTEEESGQKVEVCGKEIQVHGLSDRESVLASVFD----KYPNMIVVDYTVPAAVNGNAE 76 (213)
Q Consensus 1 MG~~i~~~~~~~~~elv~~~~~~~~~~g~~~~~~~~~v~i~~~~~~~~~l~~~~~----~~~d~VvIDFS~p~~~~~~~~ 76 (213)
+|+.+++.+.+.|..++.. ++... ..++...++.. .....+..|++.++.+...++
T Consensus 19 IG~~~a~~l~~~G~~vv~~-~r~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~ 78 (260)
T PRK07063 19 IGAAIARAFAREGAAVALA-DLDAA-------------------LAERAAAAIARDVAGARVLAVPADVTDAASVAAAVA 78 (260)
T ss_pred HHHHHHHHHHHCCCEEEEE-eCCHH-------------------HHHHHHHHHHhccCCceEEEEEccCCCHHHHHHHHH
Confidence 4888898888888887643 32211 11222222211 112235679999999999888
Q ss_pred HHHhc--CCCEEEEcCCC
Q 028115 77 LYSKV--GVPFVMGTTGG 92 (213)
Q Consensus 77 ~~~~~--g~~~ViGTTG~ 92 (213)
.+.+. ++..+|-..|.
T Consensus 79 ~~~~~~g~id~li~~ag~ 96 (260)
T PRK07063 79 AAEEAFGPLDVLVNNAGI 96 (260)
T ss_pred HHHHHhCCCcEEEECCCc
Confidence 87664 57788888874
No 315
>PRK15456 universal stress protein UspG; Provisional
Probab=47.74 E-value=82 Score=23.94 Aligned_cols=49 Identities=16% Similarity=0.230 Sum_probs=32.2
Q ss_pred EEEEcCChHHHHHHHHHHHhcCCC-EEEEcCCCCHHH------HHHHHHccCCcEEEc
Q 028115 61 IVVDYTVPAAVNGNAELYSKVGVP-FVMGTTGGDRVR------LHETIENSNVYAVIS 111 (213)
Q Consensus 61 VvIDFS~p~~~~~~~~~~~~~g~~-~ViGTTG~~~~~------~~~~~~~~~~~~v~a 111 (213)
..+-+..| ....++++.+++.. +|+||.|-+... =.++.+.+++|+++-
T Consensus 86 ~~v~~G~~--~~~I~~~a~~~~~DLIVmG~~g~~~~~~llGS~a~~v~~~a~~pVLvV 141 (142)
T PRK15456 86 QHVRFGSV--RDEVNELAEELGADVVVIGSRNPSISTHLLGSNASSVIRHANLPVLVV 141 (142)
T ss_pred EEEcCCCh--HHHHHHHHhhcCCCEEEEcCCCCCccceecCccHHHHHHcCCCCEEEe
Confidence 45555544 45677888888887 678999865321 145566677888753
No 316
>TIGR03278 methan_mark_10 putative methanogenesis marker protein 10. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The presence of motifs with seven invariant Cys residues in the N-terminal 50 residues, including three instances of CXXC, would be consistent with function as an oxidoreductase with FeS clusters. The exact function is unknown, but likely is linked to methanogenesis. In most genomes, the member of this family is encoded by a gene next to, and divergently transcribed from, the methyl coenzyme M reductase operon.
Probab=47.73 E-value=55 Score=30.87 Aligned_cols=46 Identities=20% Similarity=0.208 Sum_probs=33.9
Q ss_pred CChHHHHHHHHHHHhcCCCEEEE-cCC--C-CHHHHHHHHHccCCcEEEc
Q 028115 66 TVPAAVNGNAELYSKVGVPFVMG-TTG--G-DRVRLHETIENSNVYAVIS 111 (213)
Q Consensus 66 S~p~~~~~~~~~~~~~g~~~ViG-TTG--~-~~~~~~~~~~~~~~~~v~a 111 (213)
+.++.+.+.++.+.+.++++.++ |+| + +.+.++++.+..=-++.+|
T Consensus 86 l~~~~l~eLl~~lk~~gi~taI~~TnG~~l~~~e~~~~L~~~gld~v~iS 135 (404)
T TIGR03278 86 SCYPELEELTKGLSDLGLPIHLGYTSGKGFDDPEIAEFLIDNGVREVSFT 135 (404)
T ss_pred ccCHHHHHHHHHHHhCCCCEEEeCCCCcccCCHHHHHHHHHcCCCEEEEe
Confidence 34478899999999999999998 885 4 5667777776532456554
No 317
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=47.71 E-value=1.2e+02 Score=25.02 Aligned_cols=72 Identities=17% Similarity=0.189 Sum_probs=44.6
Q ss_pred ChHHHHHHHHhCCCeEEEEecCCCccccccccccCceeEeecCCchhHHHhhhhc--CCCCEEEEEcCChHHHHHHHHHH
Q 028115 1 MGKAVIKAADAAGLELVPVSFGTEEESGQKVEVCGKEIQVHGLSDRESVLASVFD--KYPNMIVVDYTVPAAVNGNAELY 78 (213)
Q Consensus 1 MG~~i~~~~~~~~~elv~~~~~~~~~~g~~~~~~~~~v~i~~~~~~~~~l~~~~~--~~~d~VvIDFS~p~~~~~~~~~~ 78 (213)
+|+.+++.+.++|.+++.. ++.+. ..+....++.. ..+..+..|++.++.+...++..
T Consensus 16 iG~~la~~l~~~g~~v~~~-~r~~~-------------------~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~ 75 (258)
T PRK12429 16 IGLEIALALAKEGAKVVIA-DLNDE-------------------AAAAAAEALQKAGGKAIGVAMDVTDEEAINAGIDYA 75 (258)
T ss_pred HHHHHHHHHHHCCCeEEEE-eCCHH-------------------HHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHH
Confidence 4788888888788887653 32221 11111111111 12223677999999998888877
Q ss_pred Hhc--CCCEEEEcCCC
Q 028115 79 SKV--GVPFVMGTTGG 92 (213)
Q Consensus 79 ~~~--g~~~ViGTTG~ 92 (213)
.+. ++.+||-..|.
T Consensus 76 ~~~~~~~d~vi~~a~~ 91 (258)
T PRK12429 76 VETFGGVDILVNNAGI 91 (258)
T ss_pred HHHcCCCCEEEECCCC
Confidence 654 67889888874
No 318
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=47.68 E-value=1.7e+02 Score=24.52 Aligned_cols=107 Identities=16% Similarity=0.170 Sum_probs=57.7
Q ss_pred ChHHHHHHHHhCC---Ce-EEEEecCCCccccccccccCceeEeecCCchhHHHhhhhcCCCCEEEEEcCChHHHHHHHH
Q 028115 1 MGKAVIKAADAAG---LE-LVPVSFGTEEESGQKVEVCGKEIQVHGLSDRESVLASVFDKYPNMIVVDYTVPAAVNGNAE 76 (213)
Q Consensus 1 MG~~i~~~~~~~~---~e-lv~~~~~~~~~~g~~~~~~~~~v~i~~~~~~~~~l~~~~~~~~d~VvIDFS~p~~~~~~~~ 76 (213)
||+.+++.+.+.+ .+ ++ .+++......+.+. ...++... .+.+++++ ++| +||=-+-|....+.++
T Consensus 15 mg~ala~~l~~~~~~~~~~i~-~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~-----~~D-iViiavp~~~~~~v~~ 84 (245)
T PRK07634 15 MAEAIFSGLLKTSKEYIEEII-VSNRSNVEKLDQLQ-ARYNVSTT--TDWKQHVT-----SVD-TIVLAMPPSAHEELLA 84 (245)
T ss_pred HHHHHHHHHHhCCCCCcCeEE-EECCCCHHHHHHHH-HHcCcEEe--CChHHHHh-----cCC-EEEEecCHHHHHHHHH
Confidence 7888988876443 34 33 33332111111110 01123332 35555442 578 6777777877777777
Q ss_pred HHHh--cCCCEEEEcCCCCHHHHHHHHHccCCcEE-EccChhHHH
Q 028115 77 LYSK--VGVPFVMGTTGGDRVRLHETIENSNVYAV-ISPQMGKQV 118 (213)
Q Consensus 77 ~~~~--~g~~~ViGTTG~~~~~~~~~~~~~~~~~v-~a~N~SlGv 118 (213)
.... .+..+|.-+-|++.+.++..... +.+++ .=||+..-+
T Consensus 85 ~l~~~~~~~~vis~~~gi~~~~l~~~~~~-~~~v~r~~Pn~a~~v 128 (245)
T PRK07634 85 ELSPLLSNQLVVTVAAGIGPSYLEERLPK-GTPVAWIMPNTAAEI 128 (245)
T ss_pred HHHhhccCCEEEEECCCCCHHHHHHHcCC-CCeEEEECCcHHHHH
Confidence 6543 24567888888988877665321 12333 337765543
No 319
>PRK07806 short chain dehydrogenase; Provisional
Probab=47.31 E-value=1.5e+02 Score=24.29 Aligned_cols=74 Identities=16% Similarity=0.168 Sum_probs=43.3
Q ss_pred ChHHHHHHHHhCCCeEEEEecCCCccccccccccCceeEeecCCchhHHHhhhhcC--CCCEEEEEcCChHHHHHHHHHH
Q 028115 1 MGKAVIKAADAAGLELVPVSFGTEEESGQKVEVCGKEIQVHGLSDRESVLASVFDK--YPNMIVVDYTVPAAVNGNAELY 78 (213)
Q Consensus 1 MG~~i~~~~~~~~~elv~~~~~~~~~~g~~~~~~~~~v~i~~~~~~~~~l~~~~~~--~~d~VvIDFS~p~~~~~~~~~~ 78 (213)
+|+.+++.+.+.|.+++... +.... ..+...+++... ....+..|.+.++.+...++..
T Consensus 18 iG~~l~~~l~~~G~~V~~~~-r~~~~------------------~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~ 78 (248)
T PRK07806 18 IGADTAKILAGAGAHVVVNY-RQKAP------------------RANKVVAEIEAAGGRASAVGADLTDEESVAALMDTA 78 (248)
T ss_pred HHHHHHHHHHHCCCEEEEEe-CCchH------------------hHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHH
Confidence 48888888888888877542 22100 011111111111 1222456999999998888776
Q ss_pred Hhc--CCCEEEEcCCCC
Q 028115 79 SKV--GVPFVMGTTGGD 93 (213)
Q Consensus 79 ~~~--g~~~ViGTTG~~ 93 (213)
.+. ++.+|+-..|..
T Consensus 79 ~~~~~~~d~vi~~ag~~ 95 (248)
T PRK07806 79 REEFGGLDALVLNASGG 95 (248)
T ss_pred HHhCCCCcEEEECCCCC
Confidence 553 577888777753
No 320
>PRK07814 short chain dehydrogenase; Provisional
Probab=47.04 E-value=1.2e+02 Score=25.42 Aligned_cols=72 Identities=22% Similarity=0.309 Sum_probs=44.7
Q ss_pred ChHHHHHHHHhCCCeEEEEecCCCccccccccccCceeEeecCCchhHHHhhhhcCC--CCEEEEEcCChHHHHHHHHHH
Q 028115 1 MGKAVIKAADAAGLELVPVSFGTEEESGQKVEVCGKEIQVHGLSDRESVLASVFDKY--PNMIVVDYTVPAAVNGNAELY 78 (213)
Q Consensus 1 MG~~i~~~~~~~~~elv~~~~~~~~~~g~~~~~~~~~v~i~~~~~~~~~l~~~~~~~--~d~VvIDFS~p~~~~~~~~~~ 78 (213)
+|+.+++.+.++|.+++.. ++.++ .+++..+.+.... ...+-+|++.++.+...++.+
T Consensus 22 IG~~~a~~l~~~G~~Vi~~-~r~~~-------------------~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~ 81 (263)
T PRK07814 22 LGAAIALAFAEAGADVLIA-ARTES-------------------QLDEVAEQIRAAGRRAHVVAADLAHPEATAGLAGQA 81 (263)
T ss_pred HHHHHHHHHHHCCCEEEEE-eCCHH-------------------HHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHH
Confidence 4788888888788887653 32221 1111111111111 222458999999999988888
Q ss_pred Hhc--CCCEEEEcCCC
Q 028115 79 SKV--GVPFVMGTTGG 92 (213)
Q Consensus 79 ~~~--g~~~ViGTTG~ 92 (213)
.+. ++.+|+-..|.
T Consensus 82 ~~~~~~id~vi~~Ag~ 97 (263)
T PRK07814 82 VEAFGRLDIVVNNVGG 97 (263)
T ss_pred HHHcCCCCEEEECCCC
Confidence 764 67899887773
No 321
>PRK10124 putative UDP-glucose lipid carrier transferase; Provisional
Probab=46.98 E-value=96 Score=29.45 Aligned_cols=77 Identities=13% Similarity=0.083 Sum_probs=45.4
Q ss_pred hHHHHHHHH-h--CCCeEEEEecCCCccccccccccCceeEeecC-CchhHHHhhhhcCCCCE--EEEEcCChHHHHHHH
Q 028115 2 GKAVIKAAD-A--AGLELVPVSFGTEEESGQKVEVCGKEIQVHGL-SDRESVLASVFDKYPNM--IVVDYTVPAAVNGNA 75 (213)
Q Consensus 2 G~~i~~~~~-~--~~~elv~~~~~~~~~~g~~~~~~~~~v~i~~~-~~~~~~l~~~~~~~~d~--VvIDFS~p~~~~~~~ 75 (213)
|+.+++.+. + .+++++|.+|..+. .+.++++.+. +++.+.+. +.+.|- +.+.-..++...+.+
T Consensus 155 g~~l~~~L~~~~~~g~~vVGfiDdd~~--------~g~~VpvlG~~~dL~~~v~---~~~IdeViIAip~~~~~~l~ell 223 (463)
T PRK10124 155 GQMLLESFRNEPWLGFEVVGVYHDPKP--------GGVSNDWAGNLQQLVEDAK---AGKIHNVYIAMSMCDGARVKKLV 223 (463)
T ss_pred HHHHHHHHhcCccCCeEEEEEEeCCcc--------ccCCCCcCCCHHHHHHHHH---hCCCCEEEEeCCCcchHHHHHHH
Confidence 566777765 3 36889998875431 1122333321 23333332 345673 344556667788999
Q ss_pred HHHHhcCCCEEEEc
Q 028115 76 ELYSKVGVPFVMGT 89 (213)
Q Consensus 76 ~~~~~~g~~~ViGT 89 (213)
+.|.+.++++.+--
T Consensus 224 ~~~~~~~v~V~ivP 237 (463)
T PRK10124 224 RQLADTTCSVLLIP 237 (463)
T ss_pred HHHHHcCCeEEEec
Confidence 99999999765543
No 322
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=46.92 E-value=2.4e+02 Score=26.13 Aligned_cols=21 Identities=19% Similarity=0.178 Sum_probs=15.6
Q ss_pred ChHHHHHHHHhCCCeEEEEecC
Q 028115 1 MGKAVIKAADAAGLELVPVSFG 22 (213)
Q Consensus 1 MG~~i~~~~~~~~~elv~~~~~ 22 (213)
+|..+++.+.+.|..+++ .|.
T Consensus 16 ~G~~~a~~l~~~g~~v~~-~d~ 36 (445)
T PRK04308 16 TGISMIAYLRKNGAEVAA-YDA 36 (445)
T ss_pred HHHHHHHHHHHCCCEEEE-EeC
Confidence 377888888889998775 453
No 323
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=46.82 E-value=94 Score=26.04 Aligned_cols=71 Identities=15% Similarity=0.131 Sum_probs=44.5
Q ss_pred ChHHHHHHHHhCCCeEEEEecCCCccccccccccCceeEeecCCchhHHHhhhhcCCCCEEEEEcCChHHHHHHHHHHHh
Q 028115 1 MGKAVIKAADAAGLELVPVSFGTEEESGQKVEVCGKEIQVHGLSDRESVLASVFDKYPNMIVVDYTVPAAVNGNAELYSK 80 (213)
Q Consensus 1 MG~~i~~~~~~~~~elv~~~~~~~~~~g~~~~~~~~~v~i~~~~~~~~~l~~~~~~~~d~VvIDFS~p~~~~~~~~~~~~ 80 (213)
+|+.+++.+.+.|.+++.. ++... .+++..+++ ......+..|.+.++.+...++.+.+
T Consensus 18 IG~~ia~~l~~~G~~V~~~-~r~~~-------------------~~~~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~ 76 (263)
T PRK06200 18 IGRALVERFLAEGARVAVL-ERSAE-------------------KLASLRQRF-GDHVLVVEGDVTSYADNQRAVDQTVD 76 (263)
T ss_pred HHHHHHHHHHHCCCEEEEE-eCCHH-------------------HHHHHHHHh-CCcceEEEccCCCHHHHHHHHHHHHH
Confidence 4888888888888887643 32211 112211111 11122356799999999988887766
Q ss_pred c--CCCEEEEcCCC
Q 028115 81 V--GVPFVMGTTGG 92 (213)
Q Consensus 81 ~--g~~~ViGTTG~ 92 (213)
. ++.+++-..|.
T Consensus 77 ~~g~id~li~~ag~ 90 (263)
T PRK06200 77 AFGKLDCFVGNAGI 90 (263)
T ss_pred hcCCCCEEEECCCC
Confidence 4 57789988885
No 324
>PRK00696 sucC succinyl-CoA synthetase subunit beta; Provisional
Probab=46.77 E-value=1.8e+02 Score=26.71 Aligned_cols=49 Identities=14% Similarity=0.179 Sum_probs=28.8
Q ss_pred HHHHHHHh--cCCCEEEEcCCCCHHHHHHHHHccCCcEEEccChhHHHHHH
Q 028115 73 GNAELYSK--VGVPFVMGTTGGDRVRLHETIENSNVYAVISPQMGKQVVAF 121 (213)
Q Consensus 73 ~~~~~~~~--~g~~~ViGTTG~~~~~~~~~~~~~~~~~v~a~N~SlGv~ll 121 (213)
..++...+ .++|+|+..+|-..++.+++-+.+++|+.+-+++.-.+..+
T Consensus 331 ~i~~~~~~~~~~kPvv~~~~g~~~~~~~~~L~~~Gi~ip~f~~pe~A~~al 381 (388)
T PRK00696 331 GIIAAVKEVGVTVPLVVRLEGTNVELGKKILAESGLNIIAADTLDDAAQKA 381 (388)
T ss_pred HHHHHHHhcCCCCcEEEEeCCCCHHHHHHHHHHCCCCceecCCHHHHHHHH
Confidence 34444444 68999999999555555564445675554444544444333
No 325
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=46.66 E-value=84 Score=27.01 Aligned_cols=32 Identities=13% Similarity=-0.042 Sum_probs=20.8
Q ss_pred CCCEEEEEcCChHHHHHHHHHHHhcCCCEEEEc
Q 028115 57 YPNMIVVDYTVPAAVNGNAELYSKVGVPFVMGT 89 (213)
Q Consensus 57 ~~d~VvIDFS~p~~~~~~~~~~~~~g~~~ViGT 89 (213)
.+| +++|++..+.+...++.....|.=+.+|+
T Consensus 211 gvd-~vld~~g~~~~~~~~~~l~~~G~iv~~g~ 242 (329)
T cd08294 211 GID-CYFDNVGGEFSSTVLSHMNDFGRVAVCGS 242 (329)
T ss_pred CcE-EEEECCCHHHHHHHHHhhccCCEEEEEcc
Confidence 356 77887777666666666666666555654
No 326
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=46.64 E-value=88 Score=28.33 Aligned_cols=92 Identities=23% Similarity=0.284 Sum_probs=50.8
Q ss_pred ChHHHHHHHHhCCCeEEEEecCCCccccccccccCceeEeecCC-c-hhHHHhhhhcCCCCEEEEEcCC-hHHHHHHHHH
Q 028115 1 MGKAVIKAADAAGLELVPVSFGTEEESGQKVEVCGKEIQVHGLS-D-RESVLASVFDKYPNMIVVDYTV-PAAVNGNAEL 77 (213)
Q Consensus 1 MG~~i~~~~~~~~~elv~~~~~~~~~~g~~~~~~~~~v~i~~~~-~-~~~~l~~~~~~~~d~VvIDFS~-p~~~~~~~~~ 77 (213)
||...+..+...|..-+-++|..+..+..-....+..+.+.... + ....++......+| ++||.|- |.++...++.
T Consensus 180 IGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D-~vie~~G~~~~~~~ai~~ 258 (350)
T COG1063 180 IGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGAD-VVIEAVGSPPALDQALEA 258 (350)
T ss_pred HHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCC-EEEECCCCHHHHHHHHHH
Confidence 46666666666675555555654422110001112222222111 1 11111111112578 8999986 5567888999
Q ss_pred HHhcCCCEEEEcCCCC
Q 028115 78 YSKVGVPFVMGTTGGD 93 (213)
Q Consensus 78 ~~~~g~~~ViGTTG~~ 93 (213)
+...|.=+++|++|-.
T Consensus 259 ~r~gG~v~~vGv~~~~ 274 (350)
T COG1063 259 LRPGGTVVVVGVYGGE 274 (350)
T ss_pred hcCCCEEEEEeccCCc
Confidence 9999999999999876
No 327
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=46.62 E-value=1.2e+02 Score=25.80 Aligned_cols=37 Identities=22% Similarity=0.266 Sum_probs=30.2
Q ss_pred CCC--EEEEEcCCh--HHHHHHHHHHHhcCCCEEEEcCCCC
Q 028115 57 YPN--MIVVDYTVP--AAVNGNAELYSKVGVPFVMGTTGGD 93 (213)
Q Consensus 57 ~~d--~VvIDFS~p--~~~~~~~~~~~~~g~~~ViGTTG~~ 93 (213)
.+| .++||.+.+ +...+++.++.+.++|+|+--|-++
T Consensus 109 ~~D~~llVvda~~g~~~~d~~~l~~l~~~~ip~ivvvNK~D 149 (224)
T cd04165 109 APDYAMLVVAANAGIIGMTKEHLGLALALNIPVFVVVTKID 149 (224)
T ss_pred CCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEECcc
Confidence 467 468887653 5567899999999999999999987
No 328
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=46.53 E-value=77 Score=28.02 Aligned_cols=33 Identities=18% Similarity=0.252 Sum_probs=23.8
Q ss_pred CCEEEEEcCCh-HHHHHHHHHHHhcCCCEEEEcCC
Q 028115 58 PNMIVVDYTVP-AAVNGNAELYSKVGVPFVMGTTG 91 (213)
Q Consensus 58 ~d~VvIDFS~p-~~~~~~~~~~~~~g~~~ViGTTG 91 (213)
+| ++||.+-. +.+...++.....|.=+.+|.++
T Consensus 236 ~D-~vid~~G~~~~~~~~~~~l~~~G~iv~~G~~~ 269 (343)
T PRK09880 236 FD-VSFEVSGHPSSINTCLEVTRAKGVMVQVGMGG 269 (343)
T ss_pred CC-EEEECCCCHHHHHHHHHHhhcCCEEEEEccCC
Confidence 68 89999884 56667777777777767777654
No 329
>PRK10355 xylF D-xylose transporter subunit XylF; Provisional
Probab=46.53 E-value=1e+02 Score=27.34 Aligned_cols=39 Identities=5% Similarity=0.093 Sum_probs=25.3
Q ss_pred HHhhhhcCCCCEEEEEcCChHHHHHHHHHHHhcCCCEEE
Q 028115 49 VLASVFDKYPNMIVVDYTVPAAVNGNAELYSKVGVPFVM 87 (213)
Q Consensus 49 ~l~~~~~~~~d~VvIDFS~p~~~~~~~~~~~~~g~~~Vi 87 (213)
.+..+....+|.++|--..++...+.++.+.+.++|+|+
T Consensus 73 ~i~~l~~~~vDGiIi~~~~~~~~~~~l~~~~~~~iPvV~ 111 (330)
T PRK10355 73 QIENMINRGVDVLVIIPYNGQVLSNVIKEAKQEGIKVLA 111 (330)
T ss_pred HHHHHHHcCCCEEEEeCCChhhHHHHHHHHHHCCCeEEE
Confidence 344454567895444333344456778888999999884
No 330
>PRK08862 short chain dehydrogenase; Provisional
Probab=46.31 E-value=1.3e+02 Score=25.19 Aligned_cols=71 Identities=7% Similarity=0.006 Sum_probs=44.9
Q ss_pred ChHHHHHHHHhCCCeEEEEecCCCccccccccccCceeEeecCCchhHHHhhhhcCCCC--EEEEEcCChHHHHHHHHHH
Q 028115 1 MGKAVIKAADAAGLELVPVSFGTEEESGQKVEVCGKEIQVHGLSDRESVLASVFDKYPN--MIVVDYTVPAAVNGNAELY 78 (213)
Q Consensus 1 MG~~i~~~~~~~~~elv~~~~~~~~~~g~~~~~~~~~v~i~~~~~~~~~l~~~~~~~~d--~VvIDFS~p~~~~~~~~~~ 78 (213)
+|+++++.+.++|..++.. .+.. +.+++..+++.....+ .+..|.+.++.+...++..
T Consensus 17 IG~aia~~la~~G~~V~~~-~r~~-------------------~~l~~~~~~i~~~~~~~~~~~~D~~~~~~~~~~~~~~ 76 (227)
T PRK08862 17 LGRTISCHFARLGATLILC-DQDQ-------------------SALKDTYEQCSALTDNVYSFQLKDFSQESIRHLFDAI 76 (227)
T ss_pred HHHHHHHHHHHCCCEEEEE-cCCH-------------------HHHHHHHHHHHhcCCCeEEEEccCCCHHHHHHHHHHH
Confidence 4888998888889887653 3222 1222222222211223 1346899999999988887
Q ss_pred Hhc---CCCEEEEcCC
Q 028115 79 SKV---GVPFVMGTTG 91 (213)
Q Consensus 79 ~~~---g~~~ViGTTG 91 (213)
.+. ++.+++-..|
T Consensus 77 ~~~~g~~iD~li~nag 92 (227)
T PRK08862 77 EQQFNRAPDVLVNNWT 92 (227)
T ss_pred HHHhCCCCCEEEECCc
Confidence 664 5788888886
No 331
>cd06326 PBP1_STKc_like Type I periplasmic binding domain of uncharacterized extracellular ligand-binding proteins. The type I periplasmic binding domain of uncharacterized extracellular ligand-binding proteins, some of which contain a conserved catalytic serine/threonine protein kinase (STKc) domain in the N-terminal region. Members of this group are sequence-similar to the branched-chain amino acid ABC transporter leucine-isoleucine-valine-binding protein (LIVBP); their ligand specificity has not been determined experimentally, however.
Probab=46.15 E-value=1.9e+02 Score=24.82 Aligned_cols=53 Identities=15% Similarity=0.029 Sum_probs=37.1
Q ss_pred CchhHHHhhhhcCCCCEEEEEcCChHHHHHHHHHHHhcCCCE-EEEcCCCCHHHH
Q 028115 44 SDRESVLASVFDKYPNMIVVDYTVPAAVNGNAELYSKVGVPF-VMGTTGGDRVRL 97 (213)
Q Consensus 44 ~~~~~~l~~~~~~~~d~VvIDFS~p~~~~~~~~~~~~~g~~~-ViGTTG~~~~~~ 97 (213)
.|....+.++....|| +|+=++.+......++.+.+.|... ++++.++..+.+
T Consensus 178 ~d~~~~~~~l~~~~~d-av~~~~~~~~a~~~i~~~~~~G~~~~~~~~~~~~~~~~ 231 (336)
T cd06326 178 ADVAAAVAQLAAARPQ-AVIMVGAYKAAAAFIRALRKAGGGAQFYNLSFVGADAL 231 (336)
T ss_pred ccHHHHHHHHHhcCCC-EEEEEcCcHHHHHHHHHHHhcCCCCcEEEEeccCHHHH
Confidence 4566666666666789 7787887777888999999988754 466665554433
No 332
>PRK06947 glucose-1-dehydrogenase; Provisional
Probab=46.11 E-value=1.7e+02 Score=24.09 Aligned_cols=73 Identities=15% Similarity=0.071 Sum_probs=43.3
Q ss_pred ChHHHHHHHHhCCCeEEEEecCCCccccccccccCceeEeecCCchhHHHhhhhcC--CCCEEEEEcCChHHHHHHHHHH
Q 028115 1 MGKAVIKAADAAGLELVPVSFGTEEESGQKVEVCGKEIQVHGLSDRESVLASVFDK--YPNMIVVDYTVPAAVNGNAELY 78 (213)
Q Consensus 1 MG~~i~~~~~~~~~elv~~~~~~~~~~g~~~~~~~~~v~i~~~~~~~~~l~~~~~~--~~d~VvIDFS~p~~~~~~~~~~ 78 (213)
+|+.+++...+.|.+++....+.++ ..+....++... +...+-.|.+.++.+.+.++.+
T Consensus 14 iG~~la~~l~~~g~~v~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~ 74 (248)
T PRK06947 14 IGRATAVLAAARGWSVGINYARDAA-------------------AAEETADAVRAAGGRACVVAGDVANEADVIAMFDAV 74 (248)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCCHH-------------------HHHHHHHHHHhcCCcEEEEEeccCCHHHHHHHHHHH
Confidence 4888888888888887643322211 111111111111 1123567999999999988877
Q ss_pred Hhc--CCCEEEEcCCC
Q 028115 79 SKV--GVPFVMGTTGG 92 (213)
Q Consensus 79 ~~~--g~~~ViGTTG~ 92 (213)
.+. ++.+||-..|.
T Consensus 75 ~~~~~~id~li~~ag~ 90 (248)
T PRK06947 75 QSAFGRLDALVNNAGI 90 (248)
T ss_pred HHhcCCCCEEEECCcc
Confidence 653 46788877774
No 333
>cd06376 PBP1_mGluR_groupIII Ligand-binding domain of the group III metabotropic glutamate receptor. Ligand-binding domain of the group III metabotropic glutamate receptor, a family which contains mGlu4R, mGluR6R, mGluR7, and mGluR8; all of which inhibit adenylyl cyclase. The metabotropic glutamate receptor is a member of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into intracellular responses. The mGluRs are classified into three groups which comprise eight subtypes.
Probab=46.11 E-value=43 Score=31.17 Aligned_cols=49 Identities=6% Similarity=0.146 Sum_probs=37.5
Q ss_pred chhHHHhhhhc-CCCCEEEEEcCChHHHHHHHHHHHhcCCC---EEEEcCCCCH
Q 028115 45 DRESVLASVFD-KYPNMIVVDYTVPAAVNGNAELYSKVGVP---FVMGTTGGDR 94 (213)
Q Consensus 45 ~~~~~l~~~~~-~~~d~VvIDFS~p~~~~~~~~~~~~~g~~---~ViGTTG~~~ 94 (213)
|+...+.++.. .++| |||=|+.++.+...++.+.+.|.. +.+|+.||..
T Consensus 218 d~~~~l~~ik~~~~~~-vIvl~~~~~~~~~ll~~a~~~~~~g~~~wig~d~~~~ 270 (463)
T cd06376 218 EFDKIIKRLLETPNAR-AVIIFANEDDIRRVLEAAKRANQVGHFLWVGSDSWGA 270 (463)
T ss_pred HHHHHHHHHhccCCCe-EEEEecChHHHHHHHHHHHhcCCcCceEEEEeccccc
Confidence 55566666643 4778 778888888899999999988875 5689999963
No 334
>PRK07315 fructose-bisphosphate aldolase; Provisional
Probab=46.11 E-value=1.2e+02 Score=27.32 Aligned_cols=54 Identities=11% Similarity=-0.011 Sum_probs=37.4
Q ss_pred CCCEEEEEcCChHHHHHHHHHHHhcCCCEEEEcCCCCH------H----HHHHHHHcc--CCcEEE
Q 028115 57 YPNMIVVDYTVPAAVNGNAELYSKVGVPFVMGTTGGDR------V----RLHETIENS--NVYAVI 110 (213)
Q Consensus 57 ~~d~VvIDFS~p~~~~~~~~~~~~~g~~~ViGTTG~~~------~----~~~~~~~~~--~~~~v~ 110 (213)
+.-+..+.+.+.+.+...++.|.+.+.|+++.++-... + -++.+++.+ ++||.+
T Consensus 17 ~yav~AfN~~n~e~~~avi~aAe~~~sPvIlq~s~~~~~~~~~~~~~~~~~~~~a~~~~~~vPV~l 82 (293)
T PRK07315 17 GYAVGGFNTNNLEWTQAILRAAEAKKAPVLIQTSMGAAKYMGGYKVCKNLIENLVESMGITVPVAI 82 (293)
T ss_pred CceEEEEEECCHHHHHHHHHHHHHHCCCEEEEcCccHHhhcCcHHHHHHHHHHHHHHcCCCCcEEE
Confidence 33345788888888999999999999999988765321 1 134455556 567765
No 335
>PRK10360 DNA-binding transcriptional activator UhpA; Provisional
Probab=46.09 E-value=1.4e+02 Score=23.24 Aligned_cols=71 Identities=10% Similarity=0.123 Sum_probs=35.2
Q ss_pred CchhHHHhhhhcCCCCEEEEEcCChHH-HHHHHHHHHhcCCCEEEEcCCCCHHHHHHHHHccCCcEEEccChhH
Q 028115 44 SDRESVLASVFDKYPNMIVVDYTVPAA-VNGNAELYSKVGVPFVMGTTGGDRVRLHETIENSNVYAVISPQMGK 116 (213)
Q Consensus 44 ~~~~~~l~~~~~~~~d~VvIDFS~p~~-~~~~~~~~~~~g~~~ViGTTG~~~~~~~~~~~~~~~~~v~a~N~Sl 116 (213)
++.++++..+....||.|++|...|.. ..+.++.. +...|+|+-|.--+.+......+ .+.--++.-.++.
T Consensus 34 ~~~~~~l~~~~~~~~dlvi~d~~~~~~~g~~~~~~l-~~~~~vi~~s~~~~~~~~~~~~~-~ga~~~i~kp~~~ 105 (196)
T PRK10360 34 GSGREALAGLPGRGVQVCICDISMPDISGLELLSQL-PKGMATIMLSVHDSPALVEQALN-AGARGFLSKRCSP 105 (196)
T ss_pred CCHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHH-ccCCCEEEEECCCCHHHHHHHHH-cCCcEEEECCCCH
Confidence 344555554444568988999876653 22333332 34577666544333443333332 3433333333554
No 336
>cd06374 PBP1_mGluR_groupI Ligand binding domain of the group I metabotropic glutamate receptor. Ligand binding domain of the group I metabotropic glutamate receptor, a family containing mGlu1R and mGlu5R, all of which stimulate phospholipase C (PLC) hydrolysis. The metabotropic glutamate receptor is a member of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into intracellular responses. The mGluRs are classified into three groups which comprise eight subtypes.
Probab=46.06 E-value=1.3e+02 Score=28.13 Aligned_cols=50 Identities=20% Similarity=0.331 Sum_probs=36.9
Q ss_pred chhHHHhhhhcCCCCE-EEEEcCChHHHHHHHHHHHhcCCC---EEEEcCCCCH
Q 028115 45 DRESVLASVFDKYPNM-IVVDYTVPAAVNGNAELYSKVGVP---FVMGTTGGDR 94 (213)
Q Consensus 45 ~~~~~l~~~~~~~~d~-VvIDFS~p~~~~~~~~~~~~~g~~---~ViGTTG~~~ 94 (213)
++...+..+....+|. |||=|..+..+...++.+.+.|+. +.|||.||..
T Consensus 231 d~~~~l~~lk~~~~da~vvv~~~~~~~~~~~l~~a~~~g~~~~~~wi~s~~~~~ 284 (472)
T cd06374 231 SFDRLLRKLRSRLPKARVVVCFCEGMTVRGLLMAMRRLGVGGEFQLIGSDGWAD 284 (472)
T ss_pred HHHHHHHHHHhcCCCcEEEEEEechHHHHHHHHHHHHhcCCCceEEEEeccccc
Confidence 5556677665545773 455567777888889999998885 6789999974
No 337
>PRK07831 short chain dehydrogenase; Provisional
Probab=46.00 E-value=1e+02 Score=25.83 Aligned_cols=32 Identities=19% Similarity=0.214 Sum_probs=25.9
Q ss_pred EEEEcCChHHHHHHHHHHHhc--CCCEEEEcCCC
Q 028115 61 IVVDYTVPAAVNGNAELYSKV--GVPFVMGTTGG 92 (213)
Q Consensus 61 VvIDFS~p~~~~~~~~~~~~~--g~~~ViGTTG~ 92 (213)
+..|.+.++.+...++.+.+. ++.+|+-..|+
T Consensus 74 ~~~Dl~~~~~~~~~~~~~~~~~g~id~li~~ag~ 107 (262)
T PRK07831 74 VVCDVTSEAQVDALIDAAVERLGRLDVLVNNAGL 107 (262)
T ss_pred EEccCCCHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 457999999999999887664 56788888885
No 338
>cd06320 PBP1_allose_binding Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. The members of this group are belonging to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Like other periplasmic receptors of the ABC-type transport systems, the allose-binding protein consists of two alpha/beta domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding.
Probab=45.97 E-value=1.7e+02 Score=24.23 Aligned_cols=39 Identities=15% Similarity=0.151 Sum_probs=24.7
Q ss_pred HhhhhcCCCCEEEEEcCC-hHHHHHHHHHHHhcCCCEEEEc
Q 028115 50 LASVFDKYPNMIVVDYTV-PAAVNGNAELYSKVGVPFVMGT 89 (213)
Q Consensus 50 l~~~~~~~~d~VvIDFS~-p~~~~~~~~~~~~~g~~~ViGT 89 (213)
++.+....+|.++| +.. ++.+.+.++.+.++++|+|.--
T Consensus 50 i~~l~~~~vdgiIi-~~~~~~~~~~~~~~~~~~~iPvV~~~ 89 (275)
T cd06320 50 AENMINKGYKGLLF-SPISDVNLVPAVERAKKKGIPVVNVN 89 (275)
T ss_pred HHHHHHhCCCEEEE-CCCChHHhHHHHHHHHHCCCeEEEEC
Confidence 33333456884444 333 3445667888899999998753
No 339
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=45.80 E-value=71 Score=31.71 Aligned_cols=78 Identities=14% Similarity=0.181 Sum_probs=56.9
Q ss_pred hHHHHHHHH-hCCCeEEEEecCCCccccccccccCceeEeecCCchhHHHhhhhcCCCC--EEEEEcCChHHHHHHHHHH
Q 028115 2 GKAVIKAAD-AAGLELVPVSFGTEEESGQKVEVCGKEIQVHGLSDRESVLASVFDKYPN--MIVVDYTVPAAVNGNAELY 78 (213)
Q Consensus 2 G~~i~~~~~-~~~~elv~~~~~~~~~~g~~~~~~~~~v~i~~~~~~~~~l~~~~~~~~d--~VvIDFS~p~~~~~~~~~~ 78 (213)
|..++++.. .+.+..||.+|..+...|..+ .|++++++.++.+.+++. ..+ .+.|=.-.++...+.++.|
T Consensus 128 g~~l~r~~~~~~~~~pV~fiDdd~~~~g~~i----~Gv~V~g~~~i~~~v~~~---~~~~iiiAips~~~~~~~~i~~~l 200 (588)
T COG1086 128 GDLLLRALRRDPEYTPVAFLDDDPDLTGMKI----RGVPVLGRIEIERVVEEL---GIQLILIAIPSASQEERRRILLRL 200 (588)
T ss_pred HHHHHHHHHhCCCcceEEEECCChhhcCCEE----eceeeechhHHHHHHHHc---CCceEEEecCCCCHHHHHHHHHHH
Confidence 678888887 566999999997765555443 157888777777766543 444 3566677788899999999
Q ss_pred HhcCCCEE
Q 028115 79 SKVGVPFV 86 (213)
Q Consensus 79 ~~~g~~~V 86 (213)
.++|+.+=
T Consensus 201 ~~~~~~v~ 208 (588)
T COG1086 201 ARTGIAVR 208 (588)
T ss_pred HhcCCcEE
Confidence 99996543
No 340
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=45.73 E-value=1.1e+02 Score=27.35 Aligned_cols=55 Identities=11% Similarity=0.083 Sum_probs=37.1
Q ss_pred CCCEEEEEcCChHHHHHHHHHHHhcCCCEEEEcCCCC------H----HHHHHHHHccC-CcEEEc
Q 028115 57 YPNMIVVDYTVPAAVNGNAELYSKVGVPFVMGTTGGD------R----VRLHETIENSN-VYAVIS 111 (213)
Q Consensus 57 ~~d~VvIDFS~p~~~~~~~~~~~~~g~~~ViGTTG~~------~----~~~~~~~~~~~-~~~v~a 111 (213)
+.-+-.+++.+.+.+...++.|.+.+.|+++.++-.. . ..+..+++.++ +|+++-
T Consensus 15 ~yav~Afn~~n~e~~~avi~aAe~~~~PvIl~~~~~~~~~~~~~~~~~~~~~~~a~~~~~vpv~lh 80 (282)
T TIGR01859 15 GYAVGAFNFNNLEWTQAILEAAEEENSPVIIQVSEGAIKYMGGYKMAVAMVKTLIERMSIVPVALH 80 (282)
T ss_pred CceEEEEEECCHHHHHHHHHHHHHhCCCEEEEcCcchhhccCcHHHHHHHHHHHHHHCCCCeEEEE
Confidence 3334578888888888888888888888888764321 1 12355566667 787664
No 341
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=45.72 E-value=2.4e+02 Score=25.84 Aligned_cols=120 Identities=13% Similarity=0.060 Sum_probs=58.3
Q ss_pred ChHHHHHHHHhCCCeEEEEecCCCcccccccc-ccCceeEeecCCchhHHHhhhhcCCCCEEEEEcCChHHHHHHHHHHH
Q 028115 1 MGKAVIKAADAAGLELVPVSFGTEEESGQKVE-VCGKEIQVHGLSDRESVLASVFDKYPNMIVVDYTVPAAVNGNAELYS 79 (213)
Q Consensus 1 MG~~i~~~~~~~~~elv~~~~~~~~~~g~~~~-~~~~~v~i~~~~~~~~~l~~~~~~~~d~VvIDFS~p~~~~~~~~~~~ 79 (213)
+|+.+++.+.+.+.+++. ++..+...-+... ..+..+..-++.+.+ .+.+..-.++|.|++-....+.-......|.
T Consensus 242 ~g~~l~~~L~~~~~~v~v-id~~~~~~~~~~~~~~~~~~i~gd~~~~~-~L~~~~~~~a~~vi~~~~~~~~n~~~~~~~~ 319 (453)
T PRK09496 242 IGYYLAKLLEKEGYSVKL-IERDPERAEELAEELPNTLVLHGDGTDQE-LLEEEGIDEADAFIALTNDDEANILSSLLAK 319 (453)
T ss_pred HHHHHHHHHHhCCCeEEE-EECCHHHHHHHHHHCCCCeEEECCCCCHH-HHHhcCCccCCEEEECCCCcHHHHHHHHHHH
Confidence 378888887788888764 4544321110000 011112111223333 3433333467744443333333333444556
Q ss_pred hcCCCEEEEcCCCCHHHHHHHHHccCCcEEEccChhHHHHHHHHH
Q 028115 80 KVGVPFVMGTTGGDRVRLHETIENSNVYAVISPQMGKQVVAFLAA 124 (213)
Q Consensus 80 ~~g~~~ViGTTG~~~~~~~~~~~~~~~~~v~a~N~SlGv~ll~~l 124 (213)
+.+.+-|+-.+- +.+..+.+ +..++-.+++|..-.+-.+...+
T Consensus 320 ~~~~~~ii~~~~-~~~~~~~~-~~~g~~~vi~p~~~~~~~~~~~~ 362 (453)
T PRK09496 320 RLGAKKVIALVN-RPAYVDLV-EGLGIDIAISPRQATASEILRHV 362 (453)
T ss_pred HhCCCeEEEEEC-CcchHHHH-HhcCCCEEECHHHHHHHHHHHHh
Confidence 677776765553 33333333 34456677888776555444433
No 342
>PF01565 FAD_binding_4: FAD binding domain This is only a subset of the Pfam family; InterPro: IPR006094 Various enzymes use FAD as a co-factor, most of these enzymes are oxygen-dependent oxidoreductases, containing a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage. One of the enzymes Vanillyl-alcohol oxidase (VAO, 1.1.3.38 from EC) has a solved structure, the alignment includes the FAD binding site, called the PP-loop, between residues 99-110 []. The FAD molecule is covalently bound in the known structure, however the residue that links to the FAD is not in the alignment. VAO catalyses the oxidation of a wide variety of substrates, ranging from aromatic amines to 4-alkylphenols. ; GO: 0008762 UDP-N-acetylmuramate dehydrogenase activity, 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZR6_A 3HSU_A 2AXR_A 3D2J_A 3D2H_A 3FW9_A 3FW8_A 3FW7_A 3GSY_A 3FWA_A ....
Probab=45.59 E-value=42 Score=25.59 Aligned_cols=34 Identities=21% Similarity=0.207 Sum_probs=30.7
Q ss_pred EEEEcCChHHHHHHHHHHHhcCCCEEEEcCCCCH
Q 028115 61 IVVDYTVPAAVNGNAELYSKVGVPFVMGTTGGDR 94 (213)
Q Consensus 61 VvIDFS~p~~~~~~~~~~~~~g~~~ViGTTG~~~ 94 (213)
++|--++.+.+...+++|.++++|+.+-..|.+.
T Consensus 3 ~vv~P~s~~ev~~~v~~a~~~~~~v~~~g~G~~~ 36 (139)
T PF01565_consen 3 AVVRPKSVEEVQAIVKFANENGVPVRVRGGGHSW 36 (139)
T ss_dssp EEEEESSHHHHHHHHHHHHHTTSEEEEESSSTTS
T ss_pred EEEEeCCHHHHHHHHHHHHHcCCcEEEEcCCCCc
Confidence 6788889999999999999999999999988764
No 343
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=45.46 E-value=94 Score=28.00 Aligned_cols=17 Identities=41% Similarity=0.558 Sum_probs=9.8
Q ss_pred hHHHHHHHHhCCCeEEE
Q 028115 2 GKAVIKAADAAGLELVP 18 (213)
Q Consensus 2 G~~i~~~~~~~~~elv~ 18 (213)
|...++.+...|...++
T Consensus 156 G~~aiQlAk~~G~~~v~ 172 (326)
T COG0604 156 GSAAIQLAKALGATVVA 172 (326)
T ss_pred HHHHHHHHHHcCCcEEE
Confidence 56666666666644443
No 344
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=45.38 E-value=1.5e+02 Score=23.83 Aligned_cols=68 Identities=19% Similarity=0.292 Sum_probs=45.8
Q ss_pred CCC--EEEEEcCC--hHHHHHHHHHHHhcCCCEEEEcCCCCH--HH----HHHHH----Hcc------CCcEE-EccChh
Q 028115 57 YPN--MIVVDYTV--PAAVNGNAELYSKVGVPFVMGTTGGDR--VR----LHETI----ENS------NVYAV-ISPQMG 115 (213)
Q Consensus 57 ~~d--~VvIDFS~--p~~~~~~~~~~~~~g~~~ViGTTG~~~--~~----~~~~~----~~~------~~~~v-~a~N~S 115 (213)
.+| .++||-.. -....++++.|.+.++|+|+--|-.+. .+ ++++. +.. .+|++ .|+-..
T Consensus 93 ~~D~ailvVda~~g~~~~~~~~l~~~~~~~~p~ivvlNK~D~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vi~~Sa~~g 172 (188)
T PF00009_consen 93 QADIAILVVDANDGIQPQTEEHLKILRELGIPIIVVLNKMDLIEKELEEIIEEIKEKLLKEYGENGEEIVPVIPISALTG 172 (188)
T ss_dssp TSSEEEEEEETTTBSTHHHHHHHHHHHHTT-SEEEEEETCTSSHHHHHHHHHHHHHHHHHHTTSTTTSTEEEEEEBTTTT
T ss_pred ccccceeeeecccccccccccccccccccccceEEeeeeccchhhhHHHHHHHHHHHhccccccCccccceEEEEecCCC
Confidence 567 47888873 456889999999999999999999873 21 22222 111 25765 577777
Q ss_pred HHHHHHHHH
Q 028115 116 KQVVAFLAA 124 (213)
Q Consensus 116 lGv~ll~~l 124 (213)
.|+..|++.
T Consensus 173 ~gi~~Ll~~ 181 (188)
T PF00009_consen 173 DGIDELLEA 181 (188)
T ss_dssp BTHHHHHHH
T ss_pred CCHHHHHHH
Confidence 788765554
No 345
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=45.35 E-value=37 Score=29.40 Aligned_cols=33 Identities=30% Similarity=0.270 Sum_probs=22.7
Q ss_pred CCCEEEEEcCChHH-HHHHHHHHHhcCCCEEEEcC
Q 028115 57 YPNMIVVDYTVPAA-VNGNAELYSKVGVPFVMGTT 90 (213)
Q Consensus 57 ~~d~VvIDFS~p~~-~~~~~~~~~~~g~~~ViGTT 90 (213)
.+| +|||-+.... -...-++|.++++|+|.|..
T Consensus 114 ~~D-lVvd~~D~~~~r~~ln~~~~~~~ip~v~~~~ 147 (240)
T TIGR02355 114 EHD-IVVDCTDNVEVRNQLNRQCFAAKVPLVSGAA 147 (240)
T ss_pred cCC-EEEEcCCCHHHHHHHHHHHHHcCCCEEEEEe
Confidence 567 7888765444 34455778888899888653
No 346
>PRK07825 short chain dehydrogenase; Provisional
Probab=45.29 E-value=1.1e+02 Score=25.78 Aligned_cols=70 Identities=17% Similarity=0.072 Sum_probs=44.0
Q ss_pred ChHHHHHHHHhCCCeEEEEecCCCccccccccccCceeEeecCCchhHHHhhhhcCCCCEEEEEcCChHHHHHHHHHHHh
Q 028115 1 MGKAVIKAADAAGLELVPVSFGTEEESGQKVEVCGKEIQVHGLSDRESVLASVFDKYPNMIVVDYTVPAAVNGNAELYSK 80 (213)
Q Consensus 1 MG~~i~~~~~~~~~elv~~~~~~~~~~g~~~~~~~~~v~i~~~~~~~~~l~~~~~~~~d~VvIDFS~p~~~~~~~~~~~~ 80 (213)
+|+.+++.+.++|..++.. ++.+ +.+++...++ .....+..|++.++.+...++.+.+
T Consensus 17 iG~~la~~l~~~G~~v~~~-~r~~-------------------~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~ 74 (273)
T PRK07825 17 IGLATARALAALGARVAIG-DLDE-------------------ALAKETAAEL--GLVVGGPLDVTDPASFAAFLDAVEA 74 (273)
T ss_pred HHHHHHHHHHHCCCEEEEE-ECCH-------------------HHHHHHHHHh--ccceEEEccCCCHHHHHHHHHHHHH
Confidence 4788888877778776542 2221 1111111111 1233357799999999999888776
Q ss_pred c--CCCEEEEcCCC
Q 028115 81 V--GVPFVMGTTGG 92 (213)
Q Consensus 81 ~--g~~~ViGTTG~ 92 (213)
. ++.++|-..|.
T Consensus 75 ~~~~id~li~~ag~ 88 (273)
T PRK07825 75 DLGPIDVLVNNAGV 88 (273)
T ss_pred HcCCCCEEEECCCc
Confidence 4 67888877774
No 347
>PRK08185 hypothetical protein; Provisional
Probab=45.29 E-value=1.2e+02 Score=27.27 Aligned_cols=52 Identities=13% Similarity=0.070 Sum_probs=36.8
Q ss_pred CEEEEEcCChHHHHHHHHHHHhcCCCEEEEcCCCCH-----H---HHHHHHHccCCcEEE
Q 028115 59 NMIVVDYTVPAAVNGNAELYSKVGVPFVMGTTGGDR-----V---RLHETIENSNVYAVI 110 (213)
Q Consensus 59 d~VvIDFS~p~~~~~~~~~~~~~g~~~ViGTTG~~~-----~---~~~~~~~~~~~~~v~ 110 (213)
-+-.+.+.+.+.+...++.|.+.+.|+++.++-... + -+..+++.+++||.+
T Consensus 14 aV~AfN~~n~e~~~avi~AAee~~sPvIl~~~~~~~~~~~~~~~~~~~~~a~~~~vPV~l 73 (283)
T PRK08185 14 AVGAFNVADSCFLRAVVEEAEANNAPAIIAIHPNELDFLGDNFFAYVRERAKRSPVPFVI 73 (283)
T ss_pred eEEEEEeCCHHHHHHHHHHHHHhCCCEEEEeCcchhhhccHHHHHHHHHHHHHCCCCEEE
Confidence 335778888888888888888999998888765321 1 234456667788765
No 348
>PRK01395 V-type ATP synthase subunit F; Provisional
Probab=45.26 E-value=72 Score=24.25 Aligned_cols=64 Identities=11% Similarity=0.033 Sum_probs=33.3
Q ss_pred EcCChHHHHHHHHHHHhcCCCEEEEcCCCCH---HHHHHHHHccCCcEEE-ccC----hhHHHHHHHHHHHHH
Q 028115 64 DYTVPAAVNGNAELYSKVGVPFVMGTTGGDR---VRLHETIENSNVYAVI-SPQ----MGKQVVAFLAAMEIM 128 (213)
Q Consensus 64 DFS~p~~~~~~~~~~~~~g~~~ViGTTG~~~---~~~~~~~~~~~~~~v~-a~N----~SlGv~ll~~l~~~a 128 (213)
..+.++.+.+.++.+.+..+.+|+=|..+-. +.++++ +....|+++ -|. ..+|.+-+.+.+++|
T Consensus 27 ~v~~~ee~~~~i~~l~~~d~gII~Ite~~a~~i~~~i~~~-~~~~~P~Il~IP~~~g~~~~g~~~i~~~v~kA 98 (104)
T PRK01395 27 PVIDEQEAINTLRKLAMEDYGIIYITEQIAADIPETIERY-DNQVLPAIILIPSNQGSLGIGLSRIQDNVEKA 98 (104)
T ss_pred EecChHHHHHHHHHHhcCCcEEEEEcHHHHHHhHHHHHHh-cCCCCCEEEEeCCCCCCccccHHHHHHHHHHH
Confidence 3556666666666666666666665555432 223333 222366543 222 223455666666655
No 349
>PRK06196 oxidoreductase; Provisional
Probab=45.26 E-value=1.1e+02 Score=26.77 Aligned_cols=70 Identities=16% Similarity=0.197 Sum_probs=43.5
Q ss_pred ChHHHHHHHHhCCCeEEEEecCCCccccccccccCceeEeecCCchhHHHhhhhcCCCCEEEEEcCChHHHHHHHHHHHh
Q 028115 1 MGKAVIKAADAAGLELVPVSFGTEEESGQKVEVCGKEIQVHGLSDRESVLASVFDKYPNMIVVDYTVPAAVNGNAELYSK 80 (213)
Q Consensus 1 MG~~i~~~~~~~~~elv~~~~~~~~~~g~~~~~~~~~v~i~~~~~~~~~l~~~~~~~~d~VvIDFS~p~~~~~~~~~~~~ 80 (213)
+|+.+++.+.+.|.+++.. .+.+ +..++..+++. ....+..|++.++.+...++...+
T Consensus 38 IG~~~a~~L~~~G~~Vv~~-~R~~-------------------~~~~~~~~~l~--~v~~~~~Dl~d~~~v~~~~~~~~~ 95 (315)
T PRK06196 38 LGLETTRALAQAGAHVIVP-ARRP-------------------DVAREALAGID--GVEVVMLDLADLESVRAFAERFLD 95 (315)
T ss_pred HHHHHHHHHHHCCCEEEEE-eCCH-------------------HHHHHHHHHhh--hCeEEEccCCCHHHHHHHHHHHHh
Confidence 4777777777777776643 2221 11122222221 133357899999999998888776
Q ss_pred --cCCCEEEEcCCC
Q 028115 81 --VGVPFVMGTTGG 92 (213)
Q Consensus 81 --~g~~~ViGTTG~ 92 (213)
.++.+||-..|.
T Consensus 96 ~~~~iD~li~nAg~ 109 (315)
T PRK06196 96 SGRRIDILINNAGV 109 (315)
T ss_pred cCCCCCEEEECCCC
Confidence 467888887774
No 350
>PLN02740 Alcohol dehydrogenase-like
Probab=45.24 E-value=96 Score=27.99 Aligned_cols=35 Identities=6% Similarity=-0.019 Sum_probs=25.4
Q ss_pred CCCEEEEEcCC-hHHHHHHHHHHHhc-CCCEEEEcCCC
Q 028115 57 YPNMIVVDYTV-PAAVNGNAELYSKV-GVPFVMGTTGG 92 (213)
Q Consensus 57 ~~d~VvIDFS~-p~~~~~~~~~~~~~-g~~~ViGTTG~ 92 (213)
.+| ++||++- ++.+...++.+... |.-+++|.++.
T Consensus 268 g~d-vvid~~G~~~~~~~a~~~~~~g~G~~v~~G~~~~ 304 (381)
T PLN02740 268 GVD-YSFECAGNVEVLREAFLSTHDGWGLTVLLGIHPT 304 (381)
T ss_pred CCC-EEEECCCChHHHHHHHHhhhcCCCEEEEEccCCC
Confidence 578 8999998 46667667666564 77788887754
No 351
>cd06314 PBP1_tmGBP Periplasmic sugar-binding domain of Thermotoga maritima glucose-binding protein (tmGBP) and its close homologs. Periplasmic sugar-binding domain of Thermotoga maritima glucose-binding protein (tmGBP) and its close homologs from other bacteria. They are a member of the type I periplasmic binding protein superfamily which consists of two domains connected by a three-stranded hinge. TmGBP is specific for glucose and its binding pocket is buried at the interface of the two domains. TmGBP also exhibits high thermostability and the highest structural similarity to E. coli glucose binding protein (ecGBP).
Probab=45.04 E-value=1.8e+02 Score=24.17 Aligned_cols=38 Identities=16% Similarity=0.169 Sum_probs=26.2
Q ss_pred HhhhhcCCCCEEEEEcCChHHHHHHHHHHHhcCCCEEEE
Q 028115 50 LASVFDKYPNMIVVDYTVPAAVNGNAELYSKVGVPFVMG 88 (213)
Q Consensus 50 l~~~~~~~~d~VvIDFS~p~~~~~~~~~~~~~g~~~ViG 88 (213)
+..+....+|.+++--+.+....+.++.+.+ ++|+|+-
T Consensus 48 i~~l~~~~vDgiIi~~~~~~~~~~~l~~~~~-~ipvV~~ 85 (271)
T cd06314 48 LEDLIAEGVDGIAISPIDPKAVIPALNKAAA-GIKLITT 85 (271)
T ss_pred HHHHHhcCCCEEEEecCChhHhHHHHHHHhc-CCCEEEe
Confidence 3334445788656655566667788888878 9998874
No 352
>PRK08339 short chain dehydrogenase; Provisional
Probab=45.02 E-value=1e+02 Score=26.07 Aligned_cols=72 Identities=19% Similarity=0.295 Sum_probs=44.4
Q ss_pred ChHHHHHHHHhCCCeEEEEecCCCccccccccccCceeEeecCCchhHHHhhhhcC-CCC--EEEEEcCChHHHHHHHHH
Q 028115 1 MGKAVIKAADAAGLELVPVSFGTEEESGQKVEVCGKEIQVHGLSDRESVLASVFDK-YPN--MIVVDYTVPAAVNGNAEL 77 (213)
Q Consensus 1 MG~~i~~~~~~~~~elv~~~~~~~~~~g~~~~~~~~~v~i~~~~~~~~~l~~~~~~-~~d--~VvIDFS~p~~~~~~~~~ 77 (213)
+|+++++.+.+.|..++.. ++... ++++..+++... ..+ .+..|.+.++.+...++.
T Consensus 20 IG~aia~~l~~~G~~V~~~-~r~~~-------------------~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~~ 79 (263)
T PRK08339 20 IGFGVARVLARAGADVILL-SRNEE-------------------NLKKAREKIKSESNVDVSYIVADLTKREDLERTVKE 79 (263)
T ss_pred HHHHHHHHHHHCCCEEEEE-eCCHH-------------------HHHHHHHHHHhhcCCceEEEEecCCCHHHHHHHHHH
Confidence 4888998888888887643 32211 112211111111 122 356799999999998887
Q ss_pred HHhcC-CCEEEEcCCC
Q 028115 78 YSKVG-VPFVMGTTGG 92 (213)
Q Consensus 78 ~~~~g-~~~ViGTTG~ 92 (213)
..++| +.+++-..|.
T Consensus 80 ~~~~g~iD~lv~nag~ 95 (263)
T PRK08339 80 LKNIGEPDIFFFSTGG 95 (263)
T ss_pred HHhhCCCcEEEECCCC
Confidence 76654 6788877774
No 353
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=44.95 E-value=1.3e+02 Score=25.34 Aligned_cols=75 Identities=12% Similarity=0.068 Sum_probs=44.5
Q ss_pred ChHHHHHHHHhCCCeEEEEecCCCccccccccccCceeEeecCCchhHHHhhhhcCCCCEEEEEcCChHHHHHHHHHHHh
Q 028115 1 MGKAVIKAADAAGLELVPVSFGTEEESGQKVEVCGKEIQVHGLSDRESVLASVFDKYPNMIVVDYTVPAAVNGNAELYSK 80 (213)
Q Consensus 1 MG~~i~~~~~~~~~elv~~~~~~~~~~g~~~~~~~~~v~i~~~~~~~~~l~~~~~~~~d~VvIDFS~p~~~~~~~~~~~~ 80 (213)
+|+++++.+.++|..++.. .+.... .+.+++..+++.....-.+..|.+.++.+...++.+.+
T Consensus 21 IG~aia~~la~~G~~v~~~-~r~~~~----------------~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~ 83 (257)
T PRK08594 21 IAWGIARSLHNAGAKLVFT-YAGERL----------------EKEVRELADTLEGQESLLLPCDVTSDEEITACFETIKE 83 (257)
T ss_pred HHHHHHHHHHHCCCEEEEe-cCcccc----------------hHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHHHHH
Confidence 5889999988888887643 221100 01222222221101111256799999999999988876
Q ss_pred --cCCCEEEEcCCC
Q 028115 81 --VGVPFVMGTTGG 92 (213)
Q Consensus 81 --~g~~~ViGTTG~ 92 (213)
-++.+++-..|+
T Consensus 84 ~~g~ld~lv~nag~ 97 (257)
T PRK08594 84 EVGVIHGVAHCIAF 97 (257)
T ss_pred hCCCccEEEECccc
Confidence 247788766664
No 354
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=44.94 E-value=1.1e+02 Score=22.83 Aligned_cols=51 Identities=22% Similarity=0.274 Sum_probs=35.0
Q ss_pred CCEEEEEcCCh---HHHHHHHHHHHhcCCCEEEEcCCCCHHHHHHHHHccCCcEEEcc
Q 028115 58 PNMIVVDYTVP---AAVNGNAELYSKVGVPFVMGTTGGDRVRLHETIENSNVYAVISP 112 (213)
Q Consensus 58 ~d~VvIDFS~p---~~~~~~~~~~~~~g~~~ViGTTG~~~~~~~~~~~~~~~~~v~a~ 112 (213)
.| ++|=||.. ..+.+.++.|.++|+++|.= |+.+ ++..++...+.+++..|
T Consensus 44 ~d-l~I~iS~SG~t~e~i~~~~~a~~~g~~iI~I-T~~~--~l~~~~~~~~~~~~~~p 97 (119)
T cd05017 44 KT-LVIAVSYSGNTEETLSAVEQAKERGAKIVAI-TSGG--KLLEMAREHGVPVIIIP 97 (119)
T ss_pred CC-EEEEEECCCCCHHHHHHHHHHHHCCCEEEEE-eCCc--hHHHHHHHcCCcEEECC
Confidence 45 66667744 56788888999999987654 4544 47777776676766633
No 355
>PLN02260 probable rhamnose biosynthetic enzyme
Probab=44.83 E-value=1.1e+02 Score=29.98 Aligned_cols=22 Identities=18% Similarity=0.157 Sum_probs=17.0
Q ss_pred HHHHHHHHHHhcCCCEEEEcCC
Q 028115 70 AVNGNAELYSKVGVPFVMGTTG 91 (213)
Q Consensus 70 ~~~~~~~~~~~~g~~~ViGTTG 91 (213)
.+...++.|.++|+++|+-+|+
T Consensus 461 gt~~l~~a~~~~g~~~v~~Ss~ 482 (668)
T PLN02260 461 GTLTLADVCRENGLLMMNFATG 482 (668)
T ss_pred HHHHHHHHHHHcCCeEEEEccc
Confidence 4566788999999988877564
No 356
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=44.64 E-value=44 Score=27.91 Aligned_cols=33 Identities=15% Similarity=0.188 Sum_probs=18.4
Q ss_pred CCCEEEEEcCCh-HHHHHHHHHHHhcCCCEEEEcC
Q 028115 57 YPNMIVVDYTVP-AAVNGNAELYSKVGVPFVMGTT 90 (213)
Q Consensus 57 ~~d~VvIDFS~p-~~~~~~~~~~~~~g~~~ViGTT 90 (213)
.+| +|||-+.+ +.....-++|.++++|+|.+.+
T Consensus 113 ~~d-vVi~~~d~~~~~~~ln~~c~~~~ip~i~~~~ 146 (198)
T cd01485 113 KFT-LVIATEENYERTAKVNDVCRKHHIPFISCAT 146 (198)
T ss_pred CCC-EEEECCCCHHHHHHHHHHHHHcCCCEEEEEe
Confidence 456 56666543 3334455666666677665544
No 357
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=44.56 E-value=1.6e+02 Score=25.88 Aligned_cols=23 Identities=22% Similarity=0.173 Sum_probs=18.2
Q ss_pred ChHHHHHHHHhCCCeEEEEecCCC
Q 028115 1 MGKAVIKAADAAGLELVPVSFGTE 24 (213)
Q Consensus 1 MG~~i~~~~~~~~~elv~~~~~~~ 24 (213)
||+.+++.+.+.|++|+ +.++.+
T Consensus 11 mG~~mA~~L~~~g~~v~-v~dr~~ 33 (299)
T PRK12490 11 MGGNMAERLREDGHEVV-GYDVNQ 33 (299)
T ss_pred HHHHHHHHHHhCCCEEE-EEECCH
Confidence 89999999888899887 466543
No 358
>cd00477 FTHFS Formyltetrahydrofolate synthetase (FTHFS) catalyzes the ATP-dependent activation of formate ion via its addition to the N10 position of tetrahydrofolate. FTHFS is a highly expressed key enzyme in both the Wood-Ljungdahl pathway of autotrophic CO2 fixation (acetogenesis) and the glycine synthase/reductase pathways of purinolysis. The key physiological role of this enzyme in acetogens is to catalyze the formylation of tetrahydrofolate, an initial step in the reduction of carbon dioxide and other one-carbon precursors to acetate. In purinolytic organisms, the enzymatic reaction is reversed, liberating formate from 10-formyltetrahydrofolate with concurrent production of ATP.
Probab=44.53 E-value=1.2e+02 Score=29.85 Aligned_cols=102 Identities=21% Similarity=0.267 Sum_probs=65.6
Q ss_pred HHHHHHHHHHHhcCCCEEEEcCCCC---HHHHH---HHHHccCCcEEEccChhHHHHHHHHHHHHHHHhcC--CCCC-CC
Q 028115 69 AAVNGNAELYSKVGVPFVMGTTGGD---RVRLH---ETIENSNVYAVISPQMGKQVVAFLAAMEIMAEQFP--GAFS-GY 139 (213)
Q Consensus 69 ~~~~~~~~~~~~~g~~~ViGTTG~~---~~~~~---~~~~~~~~~~v~a~N~SlGv~ll~~l~~~aa~~l~--~~~~-~~ 139 (213)
..+..|++-..++|+|+|+.-.-|. ++|++ +++++.++++.+|.-|+-|-.=-..|++...+.+. ..|. -|
T Consensus 343 ~NL~~Hi~n~~~fg~p~VVaiN~F~~Dt~~Ei~~v~~~~~~~g~~~~~~~~~~~GG~Ga~eLA~~Vi~a~e~~s~fk~LY 422 (524)
T cd00477 343 ANLRKHIENIKKFGVPVVVAINKFSTDTDAELALVRKLAEEAGAFVAVSEHWAEGGKGAVELAEAVIEACEQPSEFKFLY 422 (524)
T ss_pred HHHHHHHHHHHHcCCCeEEEecCCCCCCHHHHHHHHHHHHHcCCCEEEehhhhhhhhhHHHHHHHHHHHhcCCCCCcccc
Confidence 4567788888999999999999995 45554 44556679999998899886655566655544442 1111 13
Q ss_pred cEE--E--------EeccCCCCCCchHHHHHHHHHHHhcCC
Q 028115 140 SLQ--V--------LESHQAGKLDTSGTAKAVISCFQKLGV 170 (213)
Q Consensus 140 die--I--------~E~HH~~K~DaSGTA~~la~~~~~~~~ 170 (213)
+.+ | .|.-+...++-|-.|.+=.+.++++|+
T Consensus 423 ~~~~si~eKIetIAk~IYGA~~V~~S~~A~kqLk~ie~~Gf 463 (524)
T cd00477 423 DLEDPLEDKIETIAKKIYGADGVELSPKAKKKLARYEKQGF 463 (524)
T ss_pred CCCCCHHHHHHHHHHHccCCCceeECHHHHHHHHHHHHcCC
Confidence 322 1 234555555556667665566666664
No 359
>PRK15411 rcsA colanic acid capsular biosynthesis activation protein A; Provisional
Probab=44.48 E-value=63 Score=26.98 Aligned_cols=81 Identities=5% Similarity=0.032 Sum_probs=41.9
Q ss_pred chhHHHhhhhcCCCCEEEEE----cCChHHHHHHHHHHHhc--CCCEEEEcCCCCHHHHHHHHHccCCcEEEccChhHHH
Q 028115 45 DRESVLASVFDKYPNMIVVD----YTVPAAVNGNAELYSKV--GVPFVMGTTGGDRVRLHETIENSNVYAVISPQMGKQV 118 (213)
Q Consensus 45 ~~~~~l~~~~~~~~d~VvID----FS~p~~~~~~~~~~~~~--g~~~ViGTTG~~~~~~~~~~~~~~~~~v~a~N~SlGv 118 (213)
+.+++++.+.+..||+|++| +..|+.. +.++...+. ++++|+=| +++..+............+++-+++.-.
T Consensus 35 ~~~~~~~~~~~~~pDlvLlDl~~~l~~~~g~-~~i~~i~~~~p~~~iivlt-~~~~~~~~~~~~~~~~~~~~~K~~~~~~ 112 (207)
T PRK15411 35 TVDDLAIACDSLRPSVVFINEDCFIHDASNS-QRIKQIINQHPNTLFIVFM-AIANIHFDEYLLVRKNLLISSKSIKPES 112 (207)
T ss_pred CHHHHHHHHhccCCCEEEEeCcccCCCCChH-HHHHHHHHHCCCCeEEEEE-CCCchhHHHHHHHHhhceeeeccCCHHH
Confidence 44444554445579988999 6667655 566666553 36777766 4444332222111111113455666543
Q ss_pred HHHHHHHHHHH
Q 028115 119 VAFLAAMEIMA 129 (213)
Q Consensus 119 ~ll~~l~~~aa 129 (213)
+.+.++.+.
T Consensus 113 --L~~aI~~v~ 121 (207)
T PRK15411 113 --LDDLLGDIL 121 (207)
T ss_pred --HHHHHHHHH
Confidence 334444443
No 360
>PRK06198 short chain dehydrogenase; Provisional
Probab=44.46 E-value=1.4e+02 Score=24.82 Aligned_cols=32 Identities=6% Similarity=0.039 Sum_probs=25.3
Q ss_pred EEEEcCChHHHHHHHHHHHhc--CCCEEEEcCCC
Q 028115 61 IVVDYTVPAAVNGNAELYSKV--GVPFVMGTTGG 92 (213)
Q Consensus 61 VvIDFS~p~~~~~~~~~~~~~--g~~~ViGTTG~ 92 (213)
+.+|++.++.+.+.++.+.+. ++..|+-..|.
T Consensus 61 ~~~D~~~~~~~~~~~~~~~~~~g~id~li~~ag~ 94 (260)
T PRK06198 61 VQADLSDVEDCRRVVAAADEAFGRLDALVNAAGL 94 (260)
T ss_pred EEccCCCHHHHHHHHHHHHHHhCCCCEEEECCCc
Confidence 567999999999888776543 57888888884
No 361
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=44.44 E-value=1.1e+02 Score=26.85 Aligned_cols=13 Identities=31% Similarity=0.534 Sum_probs=6.8
Q ss_pred CCCEEEEcCCCCH
Q 028115 82 GVPFVMGTTGGDR 94 (213)
Q Consensus 82 g~~~ViGTTG~~~ 94 (213)
++|++.|++..+.
T Consensus 67 ~~~vi~gv~~~s~ 79 (285)
T TIGR00674 67 RVPVIAGTGSNAT 79 (285)
T ss_pred CCeEEEeCCCccH
Confidence 4555555555543
No 362
>PRK04452 acetyl-CoA decarbonylase/synthase complex subunit delta; Provisional
Probab=44.39 E-value=1e+02 Score=28.30 Aligned_cols=11 Identities=45% Similarity=1.081 Sum_probs=5.6
Q ss_pred cCCCEEEEcCC
Q 028115 81 VGVPFVMGTTG 91 (213)
Q Consensus 81 ~g~~~ViGTTG 91 (213)
.++|++|.+||
T Consensus 123 vd~PL~Id~s~ 133 (319)
T PRK04452 123 VDVPLIIGGSG 133 (319)
T ss_pred CCCCEEEecCC
Confidence 45555555454
No 363
>PRK05876 short chain dehydrogenase; Provisional
Probab=44.27 E-value=1.2e+02 Score=25.94 Aligned_cols=72 Identities=14% Similarity=0.032 Sum_probs=44.5
Q ss_pred ChHHHHHHHHhCCCeEEEEecCCCccccccccccCceeEeecCCchhHHHhhhhcCCCC--EEEEEcCChHHHHHHHHHH
Q 028115 1 MGKAVIKAADAAGLELVPVSFGTEEESGQKVEVCGKEIQVHGLSDRESVLASVFDKYPN--MIVVDYTVPAAVNGNAELY 78 (213)
Q Consensus 1 MG~~i~~~~~~~~~elv~~~~~~~~~~g~~~~~~~~~v~i~~~~~~~~~l~~~~~~~~d--~VvIDFS~p~~~~~~~~~~ 78 (213)
+|+.+++.+.+.|..++.. ++... .+++..+++.....+ .+..|++.++.+...++.+
T Consensus 18 IG~ala~~La~~G~~Vv~~-~r~~~-------------------~l~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~ 77 (275)
T PRK05876 18 IGLATGTEFARRGARVVLG-DVDKP-------------------GLRQAVNHLRAEGFDVHGVMCDVRHREEVTHLADEA 77 (275)
T ss_pred HHHHHHHHHHHCCCEEEEE-eCCHH-------------------HHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHH
Confidence 4888888888888887643 22211 112222222111222 2467999999999988877
Q ss_pred Hhc--CCCEEEEcCCC
Q 028115 79 SKV--GVPFVMGTTGG 92 (213)
Q Consensus 79 ~~~--g~~~ViGTTG~ 92 (213)
.+. ++.+||-..|.
T Consensus 78 ~~~~g~id~li~nAg~ 93 (275)
T PRK05876 78 FRLLGHVDVVFSNAGI 93 (275)
T ss_pred HHHcCCCCEEEECCCc
Confidence 654 47788887774
No 364
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=44.24 E-value=94 Score=27.77 Aligned_cols=33 Identities=18% Similarity=0.256 Sum_probs=19.0
Q ss_pred CCCEEEEEcCC-hHHHHHHHHHHHhcCCCEEEEcC
Q 028115 57 YPNMIVVDYTV-PAAVNGNAELYSKVGVPFVMGTT 90 (213)
Q Consensus 57 ~~d~VvIDFS~-p~~~~~~~~~~~~~g~~~ViGTT 90 (213)
.+| +++|++- +..+...++.+.+.|.=+.+|+.
T Consensus 254 ~~d-~vld~~g~~~~~~~~~~~l~~~G~~v~~g~~ 287 (365)
T cd08278 254 GVD-YALDTTGVPAVIEQAVDALAPRGTLALVGAP 287 (365)
T ss_pred CCc-EEEECCCCcHHHHHHHHHhccCCEEEEeCcC
Confidence 456 6777763 45555555555555555555554
No 365
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=44.20 E-value=2.7e+02 Score=26.00 Aligned_cols=20 Identities=20% Similarity=0.034 Sum_probs=14.0
Q ss_pred hHHHHHHHHhCCCeEEEEecC
Q 028115 2 GKAVIKAADAAGLELVPVSFG 22 (213)
Q Consensus 2 G~~i~~~~~~~~~elv~~~~~ 22 (213)
|..+++.+.+.|.+++. ++.
T Consensus 28 G~~~A~~L~~~G~~V~~-~d~ 47 (480)
T PRK01438 28 GFAAADALLELGARVTV-VDD 47 (480)
T ss_pred HHHHHHHHHHCCCEEEE-EeC
Confidence 66777777788988664 453
No 366
>PRK10701 DNA-binding transcriptional regulator RstA; Provisional
Probab=44.08 E-value=1.7e+02 Score=23.71 Aligned_cols=52 Identities=15% Similarity=0.224 Sum_probs=30.1
Q ss_pred chhHHHhhhhcCCCCEEEEEcCChHH-HHHHHHHHH-hcCCCEEEEcCCCCHHH
Q 028115 45 DRESVLASVFDKYPNMIVVDYTVPAA-VNGNAELYS-KVGVPFVMGTTGGDRVR 96 (213)
Q Consensus 45 ~~~~~l~~~~~~~~d~VvIDFS~p~~-~~~~~~~~~-~~g~~~ViGTTG~~~~~ 96 (213)
+.++++..+....||.|++|...|.. -.+.++... ....|+|+.|+.-+.+.
T Consensus 33 ~~~~~l~~~~~~~~dlvild~~l~~~~g~~~~~~ir~~~~~pii~l~~~~~~~~ 86 (240)
T PRK10701 33 RGDRAEATILREQPDLVLLDIMLPGKDGMTICRDLRPKWQGPIVLLTSLDSDMN 86 (240)
T ss_pred CHHHHHHHHhhCCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCEEEEECCCCHHH
Confidence 33444444444578988999887753 122222222 35678888876655543
No 367
>COG3707 AmiR Response regulator with putative antiterminator output domain [Signal transduction mechanisms]
Probab=44.03 E-value=1.6e+02 Score=25.13 Aligned_cols=57 Identities=16% Similarity=0.248 Sum_probs=38.6
Q ss_pred cCCCCEEEEEcCChHH-HHHHHHHHHhcCCCEEEEcCCCCHHH-HHHHHHccC-CcEEEcc
Q 028115 55 DKYPNMIVVDYTVPAA-VNGNAELYSKVGVPFVMGTTGGDRVR-LHETIENSN-VYAVISP 112 (213)
Q Consensus 55 ~~~~d~VvIDFS~p~~-~~~~~~~~~~~g~~~ViGTTG~~~~~-~~~~~~~~~-~~~v~a~ 112 (213)
...||+|++|--.|.- ..+.+..+.++-.+-++-=|+|+... +++..+ ++ .+.++=|
T Consensus 48 ~~~pDvVildie~p~rd~~e~~~~~~~~~~~piv~lt~~s~p~~i~~a~~-~Gv~ayivkp 107 (194)
T COG3707 48 RLQPDVVILDIEMPRRDIIEALLLASENVARPIVALTAYSDPALIEAAIE-AGVMAYIVKP 107 (194)
T ss_pred hcCCCEEEEecCCCCccHHHHHHHhhcCCCCCEEEEEccCChHHHHHHHH-cCCeEEEecC
Confidence 3579988999888854 57788888886666677778998654 444443 44 4445443
No 368
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=44.00 E-value=1.7e+02 Score=24.29 Aligned_cols=21 Identities=14% Similarity=0.183 Sum_probs=13.0
Q ss_pred ChHHHHHHHHhCCCeEEEEec
Q 028115 1 MGKAVIKAADAAGLELVPVSF 21 (213)
Q Consensus 1 MG~~i~~~~~~~~~elv~~~~ 21 (213)
+|..+++.+...|+.=+-.+|
T Consensus 32 lGs~ia~~La~~Gv~~i~lvD 52 (202)
T TIGR02356 32 LGSPAALYLAGAGVGTIVIVD 52 (202)
T ss_pred HHHHHHHHHHHcCCCeEEEec
Confidence 478888888776753233345
No 369
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=43.65 E-value=41 Score=31.24 Aligned_cols=33 Identities=21% Similarity=0.199 Sum_probs=24.9
Q ss_pred CCCCEEEEEcC-ChHHHHHHHHHHHhcCCCEEEEc
Q 028115 56 KYPNMIVVDYT-VPAAVNGNAELYSKVGVPFVMGT 89 (213)
Q Consensus 56 ~~~d~VvIDFS-~p~~~~~~~~~~~~~g~~~ViGT 89 (213)
..+| +|||.+ ++..-...-++|.++++|+|.|.
T Consensus 131 ~~~D-~Vvd~~d~~~~r~~ln~~~~~~~~p~v~~~ 164 (392)
T PRK07878 131 SQYD-LILDGTDNFATRYLVNDAAVLAGKPYVWGS 164 (392)
T ss_pred hcCC-EEEECCCCHHHHHHHHHHHHHcCCCEEEEE
Confidence 3678 899997 44444456688999999999863
No 370
>PLN02827 Alcohol dehydrogenase-like
Probab=43.47 E-value=84 Score=28.49 Aligned_cols=34 Identities=9% Similarity=0.084 Sum_probs=23.6
Q ss_pred CCCEEEEEcCCh-HHHHHHHHHHHhc-CCCEEEEcCC
Q 028115 57 YPNMIVVDYTVP-AAVNGNAELYSKV-GVPFVMGTTG 91 (213)
Q Consensus 57 ~~d~VvIDFS~p-~~~~~~~~~~~~~-g~~~ViGTTG 91 (213)
.+| ++||++-. ..+...++.+... |.=+++|.+.
T Consensus 263 g~d-~vid~~G~~~~~~~~l~~l~~g~G~iv~~G~~~ 298 (378)
T PLN02827 263 GAD-YSFECVGDTGIATTALQSCSDGWGLTVTLGVPK 298 (378)
T ss_pred CCC-EEEECCCChHHHHHHHHhhccCCCEEEEECCcC
Confidence 467 78898874 4567777776665 6666777764
No 371
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=43.46 E-value=75 Score=23.21 Aligned_cols=36 Identities=11% Similarity=0.050 Sum_probs=28.9
Q ss_pred CCCEEEEcCCCC----HHHHHHHHHccCCcEEEccChhHH
Q 028115 82 GVPFVMGTTGGD----RVRLHETIENSNVYAVISPQMGKQ 117 (213)
Q Consensus 82 g~~~ViGTTG~~----~~~~~~~~~~~~~~~v~a~N~SlG 117 (213)
...+||--|++- ....++.++..++|++++.+.|+.
T Consensus 48 ~aD~VIv~t~~vsH~~~~~vk~~akk~~ip~~~~~~~~~~ 87 (97)
T PF10087_consen 48 KADLVIVFTDYVSHNAMWKVKKAAKKYGIPIIYSRSRGVS 87 (97)
T ss_pred CCCEEEEEeCCcChHHHHHHHHHHHHcCCcEEEECCCCHH
Confidence 348999999985 235677777788999999999987
No 372
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=43.45 E-value=1.1e+02 Score=23.35 Aligned_cols=76 Identities=16% Similarity=0.215 Sum_probs=47.2
Q ss_pred ChHHHHHHHHhCCCeEEEEecCCCccccccccccCceeEeecCCchhHHHhhhhcCC--CCEEEEEcCChHHHHHHHHHH
Q 028115 1 MGKAVIKAADAAGLELVPVSFGTEEESGQKVEVCGKEIQVHGLSDRESVLASVFDKY--PNMIVVDYTVPAAVNGNAELY 78 (213)
Q Consensus 1 MG~~i~~~~~~~~~elv~~~~~~~~~~g~~~~~~~~~v~i~~~~~~~~~l~~~~~~~--~d~VvIDFS~p~~~~~~~~~~ 78 (213)
+|+.+++...++|...+..+.+.... ...++...++.... ...+-.|++.++.+...++.+
T Consensus 12 iG~~~a~~l~~~g~~~v~~~~r~~~~-----------------~~~~~l~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~ 74 (167)
T PF00106_consen 12 IGRALARALARRGARVVILTSRSEDS-----------------EGAQELIQELKAPGAKITFIECDLSDPESIRALIEEV 74 (167)
T ss_dssp HHHHHHHHHHHTTTEEEEEEESSCHH-----------------HHHHHHHHHHHHTTSEEEEEESETTSHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCceEEEEeeecccc-----------------ccccccccccccccccccccccccccccccccccccc
Confidence 58999999887666555444443100 11122222222112 223568999999999999999
Q ss_pred Hh--cCCCEEEEcCCCC
Q 028115 79 SK--VGVPFVMGTTGGD 93 (213)
Q Consensus 79 ~~--~g~~~ViGTTG~~ 93 (213)
.+ ..+.+|+-..|+-
T Consensus 75 ~~~~~~ld~li~~ag~~ 91 (167)
T PF00106_consen 75 IKRFGPLDILINNAGIF 91 (167)
T ss_dssp HHHHSSESEEEEECSCT
T ss_pred ccccccccccccccccc
Confidence 84 4677899888864
No 373
>PRK12746 short chain dehydrogenase; Provisional
Probab=43.44 E-value=1.4e+02 Score=24.66 Aligned_cols=73 Identities=11% Similarity=0.117 Sum_probs=43.7
Q ss_pred ChHHHHHHHHhCCCeEEEEecCCCccccccccccCceeEeecCCchhHHHhhhhcC--CCCEEEEEcCChHHHHHHHHHH
Q 028115 1 MGKAVIKAADAAGLELVPVSFGTEEESGQKVEVCGKEIQVHGLSDRESVLASVFDK--YPNMIVVDYTVPAAVNGNAELY 78 (213)
Q Consensus 1 MG~~i~~~~~~~~~elv~~~~~~~~~~g~~~~~~~~~v~i~~~~~~~~~l~~~~~~--~~d~VvIDFS~p~~~~~~~~~~ 78 (213)
+|+.+++.+.++|.+++....+... ..++..+.+... ....+-.|++.++.+...++.+
T Consensus 18 iG~~la~~l~~~G~~v~i~~~r~~~-------------------~~~~~~~~~~~~~~~~~~~~~D~~d~~~i~~~~~~~ 78 (254)
T PRK12746 18 IGRAIAMRLANDGALVAIHYGRNKQ-------------------AADETIREIESNGGKAFLIEADLNSIDGVKKLVEQL 78 (254)
T ss_pred HHHHHHHHHHHCCCEEEEEcCCCHH-------------------HHHHHHHHHHhcCCcEEEEEcCcCCHHHHHHHHHHH
Confidence 4888888888788877643222211 111111111111 1122457999999999888877
Q ss_pred Hhc--------CCCEEEEcCCC
Q 028115 79 SKV--------GVPFVMGTTGG 92 (213)
Q Consensus 79 ~~~--------g~~~ViGTTG~ 92 (213)
.+. ++..|+-+.|.
T Consensus 79 ~~~~~~~~~~~~id~vi~~ag~ 100 (254)
T PRK12746 79 KNELQIRVGTSEIDILVNNAGI 100 (254)
T ss_pred HHHhccccCCCCccEEEECCCC
Confidence 653 57888877775
No 374
>TIGR01831 fabG_rel 3-oxoacyl-(acyl-carrier-protein) reductase, putative. This model represents a small, very well conserved family of proteins closely related to the FabG family, TIGR01830, and possibly equal in function. In all completed genomes with a member of this family, a FabG in TIGR01830 is also found.
Probab=43.32 E-value=1.7e+02 Score=23.86 Aligned_cols=73 Identities=19% Similarity=0.171 Sum_probs=43.0
Q ss_pred ChHHHHHHHHhCCCeEEEEecCCCccccccccccCceeEeecCCchhHHHhhhhcC--CCCEEEEEcCChHHHHHHHHHH
Q 028115 1 MGKAVIKAADAAGLELVPVSFGTEEESGQKVEVCGKEIQVHGLSDRESVLASVFDK--YPNMIVVDYTVPAAVNGNAELY 78 (213)
Q Consensus 1 MG~~i~~~~~~~~~elv~~~~~~~~~~g~~~~~~~~~v~i~~~~~~~~~l~~~~~~--~~d~VvIDFS~p~~~~~~~~~~ 78 (213)
.|+.+++.+.++|.+++....+..+ ..+.....+... +...+..|++.++.+...++..
T Consensus 10 iG~~~a~~l~~~G~~v~~~~~~~~~-------------------~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~ 70 (239)
T TIGR01831 10 IGRAIANRLAADGFEICVHYHSGRS-------------------DAESVVSAIQAQGGNARLLQFDVADRVACRTLLEAD 70 (239)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCCHH-------------------HHHHHHHHHHHcCCeEEEEEccCCCHHHHHHHHHHH
Confidence 3788999888889987644222111 111111221111 1223678999999998888775
Q ss_pred Hhc--CCCEEEEcCCC
Q 028115 79 SKV--GVPFVMGTTGG 92 (213)
Q Consensus 79 ~~~--g~~~ViGTTG~ 92 (213)
.+. ++..++-..|.
T Consensus 71 ~~~~~~i~~li~~ag~ 86 (239)
T TIGR01831 71 IAEHGAYYGVVLNAGI 86 (239)
T ss_pred HHHcCCCCEEEECCCC
Confidence 542 35667766663
No 375
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=43.27 E-value=90 Score=28.27 Aligned_cols=50 Identities=16% Similarity=0.161 Sum_probs=31.1
Q ss_pred hhhcCCCCEEEEEcC--ChHHHHHHHHHHHhcC--CCEEEEcCCCCHHHHHHHHH
Q 028115 52 SVFDKYPNMIVVDYT--VPAAVNGNAELYSKVG--VPFVMGTTGGDRVRLHETIE 102 (213)
Q Consensus 52 ~~~~~~~d~VvIDFS--~p~~~~~~~~~~~~~g--~~~ViGTTG~~~~~~~~~~~ 102 (213)
.+.+..+|.++||++ +++...+.++...+.. +++++|+. .+.++.+.+.+
T Consensus 101 ~l~eagv~~I~vd~~~G~~~~~~~~i~~ik~~~p~v~Vi~G~v-~t~~~A~~l~~ 154 (325)
T cd00381 101 ALVEAGVDVIVIDSAHGHSVYVIEMIKFIKKKYPNVDVIAGNV-VTAEAARDLID 154 (325)
T ss_pred HHHhcCCCEEEEECCCCCcHHHHHHHHHHHHHCCCceEEECCC-CCHHHHHHHHh
Confidence 334456785678887 3456777788777765 66666554 55555555544
No 376
>PRK04165 acetyl-CoA decarbonylase/synthase complex subunit gamma; Provisional
Probab=43.23 E-value=2.1e+02 Score=27.44 Aligned_cols=56 Identities=11% Similarity=0.217 Sum_probs=42.3
Q ss_pred CCEEEEEcC--ChHHHHHHHHHHHh-cCCCEEEEcCCCCHHHHHHHHHc-cC-CcEEEccChh
Q 028115 58 PNMIVVDYT--VPAAVNGNAELYSK-VGVPFVMGTTGGDRVRLHETIEN-SN-VYAVISPQMG 115 (213)
Q Consensus 58 ~d~VvIDFS--~p~~~~~~~~~~~~-~g~~~ViGTTG~~~~~~~~~~~~-~~-~~~v~a~N~S 115 (213)
+|+|.|=+. .|+.+.+.++...+ .++|+++.| ++.+.+++..+. +. +|.++|.|..
T Consensus 128 AD~IaL~~~s~dp~~v~~~Vk~V~~~~dvPLSIDT--~dpevleaAleagad~~plI~Sat~d 188 (450)
T PRK04165 128 LDMVALRNASGDPEKFAKAVKKVAETTDLPLILCS--EDPAVLKAALEVVADRKPLLYAATKE 188 (450)
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHHHhcCCCEEEeC--CCHHHHHHHHHhcCCCCceEEecCcc
Confidence 785555553 48889999999888 699999988 777777665554 34 8999998863
No 377
>TIGR01282 nifD nitrogenase molybdenum-iron protein alpha chain. Nitrogenase consists of alpha (NifD) and beta (NifK) subunits of the molybdenum-iron protein and an ATP-binding iron-sulfur protein (NifH). This model describes a large clade of NifD proteins, but excludes a lineage that contains putative NifD and NifD homologs from species with vanadium-dependent nitrogenases.
Probab=42.99 E-value=40 Score=32.16 Aligned_cols=33 Identities=12% Similarity=0.021 Sum_probs=25.9
Q ss_pred HHHHccCCcEEEccChhHHHHHHHHHHHHHHHhcC
Q 028115 99 ETIENSNVYAVISPQMGKQVVAFLAAMEIMAEQFP 133 (213)
Q Consensus 99 ~~~~~~~~~~v~a~N~SlGv~ll~~l~~~aa~~l~ 133 (213)
.+++..++|.+..+ | +|+.-..++++.+++.|+
T Consensus 272 ~Le~~fGiP~~~~~-~-~Gi~~T~~~Lr~ia~~~g 304 (466)
T TIGR01282 272 HMEEKYGIPWMEYN-F-FGPTKIAESLRKIAEFFD 304 (466)
T ss_pred HHHHHhCCceEeCC-C-CCHHHHHHHHHHHHHHHC
Confidence 35566789988775 5 898888888888888875
No 378
>PRK07677 short chain dehydrogenase; Provisional
Probab=42.88 E-value=1.7e+02 Score=24.24 Aligned_cols=72 Identities=21% Similarity=0.208 Sum_probs=43.9
Q ss_pred ChHHHHHHHHhCCCeEEEEecCCCccccccccccCceeEeecCCchhHHHhhhhcCCCC--EEEEEcCChHHHHHHHHHH
Q 028115 1 MGKAVIKAADAAGLELVPVSFGTEEESGQKVEVCGKEIQVHGLSDRESVLASVFDKYPN--MIVVDYTVPAAVNGNAELY 78 (213)
Q Consensus 1 MG~~i~~~~~~~~~elv~~~~~~~~~~g~~~~~~~~~v~i~~~~~~~~~l~~~~~~~~d--~VvIDFS~p~~~~~~~~~~ 78 (213)
+|+.+++.+.++|..|+.. ++... +.++..+.+.....+ .+-.|.|.++.+...+..+
T Consensus 13 iG~~ia~~l~~~G~~Vi~~-~r~~~-------------------~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 72 (252)
T PRK07677 13 MGKAMAKRFAEEGANVVIT-GRTKE-------------------KLEEAKLEIEQFPGQVLTVQMDVRNPEDVQKMVEQI 72 (252)
T ss_pred HHHHHHHHHHHCCCEEEEE-eCCHH-------------------HHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHH
Confidence 4888998888888887653 32211 111111111111122 2456999999999988887
Q ss_pred Hhc--CCCEEEEcCCC
Q 028115 79 SKV--GVPFVMGTTGG 92 (213)
Q Consensus 79 ~~~--g~~~ViGTTG~ 92 (213)
.+. ++..||-..|.
T Consensus 73 ~~~~~~id~lI~~ag~ 88 (252)
T PRK07677 73 DEKFGRIDALINNAAG 88 (252)
T ss_pred HHHhCCccEEEECCCC
Confidence 653 57788877763
No 379
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=42.78 E-value=88 Score=20.93 Aligned_cols=43 Identities=12% Similarity=0.063 Sum_probs=24.0
Q ss_pred hHHHhhhhcCCCC-EEEEEcCChHHHHHHHHHHHhcCCCEEEEc
Q 028115 47 ESVLASVFDKYPN-MIVVDYTVPAAVNGNAELYSKVGVPFVMGT 89 (213)
Q Consensus 47 ~~~l~~~~~~~~d-~VvIDFS~p~~~~~~~~~~~~~g~~~ViGT 89 (213)
++.+....+...+ +.+-|-.+.....+..+.+.+.|++++.|.
T Consensus 18 ~~~~~~a~~~g~~~v~iTDh~~~~~~~~~~~~~~~~gi~~i~G~ 61 (67)
T smart00481 18 EELVKRAKELGLKAIAITDHGNLFGAVEFYKAAKKAGIKPIIGL 61 (67)
T ss_pred HHHHHHHHHcCCCEEEEeeCCcccCHHHHHHHHHHcCCeEEEEE
Confidence 3333333334455 345566655566666666666777776663
No 380
>cd06302 PBP1_LsrB_Quorum_Sensing Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs. Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs from other bacteria. The members of this group are homologous to a family of periplasmic pentose/hexose sugar-binding proteins that function as the primary receptors for chemotaxis and transporters of many sugar based solutes in bacteria and archaea and that are a member of the type I periplasmic binding protein superfamily. LsrB binds a chemically distinct form of the AI-2 signal that lacks boron, in contrast to the Vibrio harveyi AI-2 signaling molecule that has an unusual furanosyl borate diester. Hence, many bacteria coordinate their gene expression according to the local density of their population by producing species specific AI-2. This process of quorum sensing allows LsrB to function as a periplasmic AI-2 binding p
Probab=42.70 E-value=2.2e+02 Score=24.40 Aligned_cols=37 Identities=16% Similarity=0.152 Sum_probs=24.5
Q ss_pred hhhhcCCCCEEEEEcCChHHHHHHHHHHHhcCCCEEE
Q 028115 51 ASVFDKYPNMIVVDYTVPAAVNGNAELYSKVGVPFVM 87 (213)
Q Consensus 51 ~~~~~~~~d~VvIDFS~p~~~~~~~~~~~~~g~~~Vi 87 (213)
..+....+|.++|.=..++...+.++.+.+.++|+|.
T Consensus 50 ~~~~~~~~DgiIi~~~~~~~~~~~~~~~~~~~iPvV~ 86 (298)
T cd06302 50 EDLIAQGVDAIAVVPNDPDALEPVLKKAREAGIKVVT 86 (298)
T ss_pred HHHHhcCCCEEEEecCCHHHHHHHHHHHHHCCCeEEE
Confidence 3333357885555323355567888889999999885
No 381
>COG2130 Putative NADP-dependent oxidoreductases [General function prediction only]
Probab=42.69 E-value=1.1e+02 Score=28.35 Aligned_cols=49 Identities=12% Similarity=0.078 Sum_probs=23.8
Q ss_pred CCCEEEEEcCChHHHHHHHHHHHhcCCCEEEEcCCCC--HHHHHHHHHccCCc
Q 028115 57 YPNMIVVDYTVPAAVNGNAELYSKVGVPFVMGTTGGD--RVRLHETIENSNVY 107 (213)
Q Consensus 57 ~~d~VvIDFS~p~~~~~~~~~~~~~g~~~ViGTTG~~--~~~~~~~~~~~~~~ 107 (213)
.+| ++||+-.+ .+.+-++.++-.|+.+-.=-.|-+ ++-+..+...+.+|
T Consensus 196 GfD-~~idyk~~-d~~~~L~~a~P~GIDvyfeNVGg~v~DAv~~~ln~~aRi~ 246 (340)
T COG2130 196 GFD-AGIDYKAE-DFAQALKEACPKGIDVYFENVGGEVLDAVLPLLNLFARIP 246 (340)
T ss_pred CCc-eeeecCcc-cHHHHHHHHCCCCeEEEEEcCCchHHHHHHHhhcccccee
Confidence 455 56666555 344444444455666555555544 22244444444433
No 382
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=42.52 E-value=1.4e+02 Score=26.86 Aligned_cols=54 Identities=15% Similarity=0.098 Sum_probs=36.5
Q ss_pred CCCEEEEEcCChHHHHHHHHHHHhcCCCEEEEcCCCCH------H----HHHHHHHccC--CcEEE
Q 028115 57 YPNMIVVDYTVPAAVNGNAELYSKVGVPFVMGTTGGDR------V----RLHETIENSN--VYAVI 110 (213)
Q Consensus 57 ~~d~VvIDFS~p~~~~~~~~~~~~~g~~~ViGTTG~~~------~----~~~~~~~~~~--~~~v~ 110 (213)
+.-+-.+++.+.+.+...++.|.+.+.|+++.++-... + -++.+++.++ +|+.+
T Consensus 17 ~yAV~AfN~~n~e~~~avi~AAe~~~sPvIiq~~~~~~~~~~~~~~~~~~~~~~a~~~~~~VPV~l 82 (285)
T PRK07709 17 KYAVGQFNMNNLEWTQAILAAAEEEKSPVILGVSEGAARHMTGFKTVVAMVKALIEEMNITVPVAI 82 (285)
T ss_pred CceEEEEEECCHHHHHHHHHHHHHHCCCEEEEcCcchhhhcCCHHHHHHHHHHHHHHcCCCCcEEE
Confidence 33345788888888889999999999998888754321 1 2344555554 67765
No 383
>TIGR02634 xylF D-xylose ABC transporter, substrate-binding protein. Members of this family are periplasmic (when in Gram-negative bacteria) binding proteins for D-xylose import by a high-affinity ATP-binding cassette (ABC) transporter.
Probab=42.47 E-value=1.5e+02 Score=25.66 Aligned_cols=38 Identities=8% Similarity=0.109 Sum_probs=26.4
Q ss_pred HhhhhcCCCCEEEEEcCC-hHHHHHHHHHHHhcCCCEEEE
Q 028115 50 LASVFDKYPNMIVVDYTV-PAAVNGNAELYSKVGVPFVMG 88 (213)
Q Consensus 50 l~~~~~~~~d~VvIDFS~-p~~~~~~~~~~~~~g~~~ViG 88 (213)
++.+....+| .+|-++. +....+.++.+.+.++|+|.-
T Consensus 47 i~~l~~~~vD-gIIi~~~~~~~~~~~l~~~~~~~iPvV~~ 85 (302)
T TIGR02634 47 IENLIARGVD-VLVIIPQNGQVLSNAVQEAKDEGIKVVAY 85 (302)
T ss_pred HHHHHHcCCC-EEEEeCCChhHHHHHHHHHHHCCCeEEEe
Confidence 3444456789 5555664 445678889999999998764
No 384
>cd04509 PBP1_ABC_transporter_GCPR_C_like Family C of G-protein coupled receptors and their close homologs, the type I periplasmic-binding proteins of ATP-binding cassette transporter-like systems. This CD includes members of the family C of G-protein coupled receptors and their close homologs, the type I periplasmic-binding proteins of ATP-binding cassette transporter-like systems. The family C GPCR includes glutamate/glycine-gated ion channels such as the NMDA receptor, G-protein-coupled receptors, metabotropic glutamate, GABA-B, calcium sensing, phermone receptors, and atrial natriuretic peptide-guanylate cyclase receptors. The glutamate receptors that form cation-selective ion channels, iGluR, can be classified into three different subgroups according to their binding-affinity for the agonists NMDA (N-methyl-D-asparate), AMPA (alpha-amino-3-dihydro-5-methyl-3-oxo-4-isoxazolepropionic acid), and kainate. L-glutamate is a major neurotransmitter in the brain of vertebrates and acts th
Probab=42.47 E-value=1.9e+02 Score=23.66 Aligned_cols=49 Identities=18% Similarity=0.179 Sum_probs=35.5
Q ss_pred CchhHHHhhhhcCCCCEEEEEcCChHHHHHHHHHHHhcCC---CEEEEcCCCC
Q 028115 44 SDRESVLASVFDKYPNMIVVDYTVPAAVNGNAELYSKVGV---PFVMGTTGGD 93 (213)
Q Consensus 44 ~~~~~~l~~~~~~~~d~VvIDFS~p~~~~~~~~~~~~~g~---~~ViGTTG~~ 93 (213)
.+....+.++....+| +|+.++.+..+...++.+.+.|+ ..++|+..+.
T Consensus 178 ~~~~~~~~~l~~~~~~-~v~~~~~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~ 229 (299)
T cd04509 178 TDFTSLLQKLKAAKPD-VIVLCGSGEDAATILKQAAEAGLTGGYPILGITLGL 229 (299)
T ss_pred ccHHHHHHHHHhcCCC-EEEEcccchHHHHHHHHHHHcCCCCCCcEEeccccc
Confidence 3555566666555688 78888888888889999999886 4566666554
No 385
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=42.45 E-value=48 Score=26.38 Aligned_cols=107 Identities=22% Similarity=0.266 Sum_probs=53.9
Q ss_pred ChHHHHHHHHhCCCeEEEEecCCCccc------cccc-cccCc----eeEeecCCchhHHHhhhhcCCCCEEEEEcCChH
Q 028115 1 MGKAVIKAADAAGLELVPVSFGTEEES------GQKV-EVCGK----EIQVHGLSDRESVLASVFDKYPNMIVVDYTVPA 69 (213)
Q Consensus 1 MG~~i~~~~~~~~~elv~~~~~~~~~~------g~~~-~~~~~----~v~i~~~~~~~~~l~~~~~~~~d~VvIDFS~p~ 69 (213)
||.+++..+...++++.- ..+.+..+ +... ...+. .+.+ ++|++++++ ++| ++| ++.|.
T Consensus 10 ~G~AlA~~la~~g~~V~l-~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~--t~dl~~a~~-----~ad-~Ii-iavPs 79 (157)
T PF01210_consen 10 WGTALAALLADNGHEVTL-WGRDEEQIEEINETRQNPKYLPGIKLPENIKA--TTDLEEALE-----DAD-III-IAVPS 79 (157)
T ss_dssp HHHHHHHHHHHCTEEEEE-ETSCHHHHHHHHHHTSETTTSTTSBEETTEEE--ESSHHHHHT-----T-S-EEE-E-S-G
T ss_pred HHHHHHHHHHHcCCEEEE-EeccHHHHHHHHHhCCCCCCCCCcccCccccc--ccCHHHHhC-----ccc-EEE-ecccH
Confidence 688888888888877663 23222110 0000 01111 2333 468887763 578 555 55554
Q ss_pred -HHHHHHHH---HHhcCCCEEEEcCCCCH-------HHHHHHHHccCCcEEEccChhHH
Q 028115 70 -AVNGNAEL---YSKVGVPFVMGTTGGDR-------VRLHETIENSNVYAVISPQMGKQ 117 (213)
Q Consensus 70 -~~~~~~~~---~~~~g~~~ViGTTG~~~-------~~~~~~~~~~~~~~v~a~N~SlG 117 (213)
...+.++. +++.+.++|+.|-|+.. +-+++......+.++--|||+--
T Consensus 80 ~~~~~~~~~l~~~l~~~~~ii~~~KG~~~~~~~~~~~~i~~~~~~~~~~~lsGP~~A~E 138 (157)
T PF01210_consen 80 QAHREVLEQLAPYLKKGQIIISATKGFEPGTLLLLSEVIEEILPIPRIAVLSGPSFAEE 138 (157)
T ss_dssp GGHHHHHHHHTTTSHTT-EEEETS-SEETTEEEEHHHHHHHHHSSCGEEEEESS--HHH
T ss_pred HHHHHHHHHHhhccCCCCEEEEecCCcccCCCccHHHHHHHHhhhcceEEeeCccHHHH
Confidence 34444444 44578899998889832 22333333333666778998753
No 386
>PRK06483 dihydromonapterin reductase; Provisional
Probab=42.38 E-value=1.4e+02 Score=24.45 Aligned_cols=69 Identities=14% Similarity=0.149 Sum_probs=43.1
Q ss_pred ChHHHHHHHHhCCCeEEEEecCCCccccccccccCceeEeecCCchhHHHhhhhcCCCCEEEEEcCChHHHHHHHHHHHh
Q 028115 1 MGKAVIKAADAAGLELVPVSFGTEEESGQKVEVCGKEIQVHGLSDRESVLASVFDKYPNMIVVDYTVPAAVNGNAELYSK 80 (213)
Q Consensus 1 MG~~i~~~~~~~~~elv~~~~~~~~~~g~~~~~~~~~v~i~~~~~~~~~l~~~~~~~~d~VvIDFS~p~~~~~~~~~~~~ 80 (213)
+|+.+++.+.+.|..++.. ++.+. +..+.+.. .....+-.|++.++.+...++...+
T Consensus 14 IG~~ia~~l~~~G~~V~~~-~r~~~-------------------~~~~~~~~---~~~~~~~~D~~~~~~~~~~~~~~~~ 70 (236)
T PRK06483 14 IGLALAWHLLAQGQPVIVS-YRTHY-------------------PAIDGLRQ---AGAQCIQADFSTNAGIMAFIDELKQ 70 (236)
T ss_pred HHHHHHHHHHHCCCeEEEE-eCCch-------------------hHHHHHHH---cCCEEEEcCCCCHHHHHHHHHHHHh
Confidence 4889999888888888753 32221 00111111 1223356899999999998888765
Q ss_pred c--CCCEEEEcCCC
Q 028115 81 V--GVPFVMGTTGG 92 (213)
Q Consensus 81 ~--g~~~ViGTTG~ 92 (213)
. ++..++-..|.
T Consensus 71 ~~~~id~lv~~ag~ 84 (236)
T PRK06483 71 HTDGLRAIIHNASD 84 (236)
T ss_pred hCCCccEEEECCcc
Confidence 3 37777777774
No 387
>TIGR02415 23BDH acetoin reductases. One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).
Probab=42.35 E-value=1.6e+02 Score=24.21 Aligned_cols=72 Identities=11% Similarity=0.117 Sum_probs=44.5
Q ss_pred ChHHHHHHHHhCCCeEEEEecCCCccccccccccCceeEeecCCchhHHHhhhhcCC--CCEEEEEcCChHHHHHHHHHH
Q 028115 1 MGKAVIKAADAAGLELVPVSFGTEEESGQKVEVCGKEIQVHGLSDRESVLASVFDKY--PNMIVVDYTVPAAVNGNAELY 78 (213)
Q Consensus 1 MG~~i~~~~~~~~~elv~~~~~~~~~~g~~~~~~~~~v~i~~~~~~~~~l~~~~~~~--~d~VvIDFS~p~~~~~~~~~~ 78 (213)
.|+.+++.+.+.|.+++.. .+.. ...++...++.... ...+..|++.++.+.+.++.+
T Consensus 12 iG~~la~~l~~~G~~v~~~-~r~~-------------------~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~i~~~~~~~ 71 (254)
T TIGR02415 12 IGKGIAERLAKDGFAVAVA-DLNE-------------------ETAKETAKEINQAGGKAVAYKLDVSDKDQVFSAIDQA 71 (254)
T ss_pred HHHHHHHHHHHCCCEEEEE-eCCH-------------------HHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHH
Confidence 4788888888888887643 2211 01111112221112 223567999999999988877
Q ss_pred Hhc--CCCEEEEcCCC
Q 028115 79 SKV--GVPFVMGTTGG 92 (213)
Q Consensus 79 ~~~--g~~~ViGTTG~ 92 (213)
.+. ++..|+-..|.
T Consensus 72 ~~~~~~id~vi~~ag~ 87 (254)
T TIGR02415 72 AEKFGGFDVMVNNAGV 87 (254)
T ss_pred HHHcCCCCEEEECCCc
Confidence 654 57888888886
No 388
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=42.35 E-value=1.7e+02 Score=23.59 Aligned_cols=75 Identities=16% Similarity=0.219 Sum_probs=43.3
Q ss_pred ChHHHHHHHHhCCCeEEEEecCCCccccccccccCceeEeecCCchhHHHhhhhcCCCCEEEEEcCChHHHHHHHHHHHh
Q 028115 1 MGKAVIKAADAAGLELVPVSFGTEEESGQKVEVCGKEIQVHGLSDRESVLASVFDKYPNMIVVDYTVPAAVNGNAELYSK 80 (213)
Q Consensus 1 MG~~i~~~~~~~~~elv~~~~~~~~~~g~~~~~~~~~v~i~~~~~~~~~l~~~~~~~~d~VvIDFS~p~~~~~~~~~~~~ 80 (213)
.|+.+++.+.++|.+++....+..... ..+...+... ......+..|++.++.+...++...+
T Consensus 18 iG~~l~~~l~~~g~~v~~~~~~~~~~~----------------~~~~~~~~~~-~~~~~~~~~D~~~~~~v~~~~~~~~~ 80 (249)
T PRK12825 18 LGRAIALRLARAGADVVVHYRSDEEAA----------------EELVEAVEAL-GRRAQAVQADVTDKAALEAAVAAAVE 80 (249)
T ss_pred HHHHHHHHHHHCCCeEEEEeCCCHHHH----------------HHHHHHHHhc-CCceEEEECCcCCHHHHHHHHHHHHH
Confidence 478888888888888754333221100 0011111110 01122356899999999888876655
Q ss_pred c--CCCEEEEcCCC
Q 028115 81 V--GVPFVMGTTGG 92 (213)
Q Consensus 81 ~--g~~~ViGTTG~ 92 (213)
. ++..|+=..|.
T Consensus 81 ~~~~id~vi~~ag~ 94 (249)
T PRK12825 81 RFGRIDILVNNAGI 94 (249)
T ss_pred HcCCCCEEEECCcc
Confidence 3 68888887774
No 389
>PRK09581 pleD response regulator PleD; Reviewed
Probab=42.29 E-value=1.7e+02 Score=26.14 Aligned_cols=69 Identities=19% Similarity=0.174 Sum_probs=39.1
Q ss_pred CchhHHHhhhhcCCCCEEEEEcCChHH-HHHHHHHHHhc----CCCEEEEcCCCCHHHHHHHHHccCCcEEEcc
Q 028115 44 SDRESVLASVFDKYPNMIVVDYTVPAA-VNGNAELYSKV----GVPFVMGTTGGDRVRLHETIENSNVYAVISP 112 (213)
Q Consensus 44 ~~~~~~l~~~~~~~~d~VvIDFS~p~~-~~~~~~~~~~~----g~~~ViGTTG~~~~~~~~~~~~~~~~~v~a~ 112 (213)
.+.++++..+....||.|++|...|.. ..+.++...+. .+|+|+-|..-+.+....+.+..-...+.-|
T Consensus 33 ~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~l~~~i~~~~~~~~~~ii~~s~~~~~~~~~~~~~~ga~~~l~kp 106 (457)
T PRK09581 33 SSGAEAIAICEREQPDIILLDVMMPGMDGFEVCRRLKSDPATTHIPVVMVTALDDPEDRVRGLEAGADDFLTKP 106 (457)
T ss_pred CCHHHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHcCcccCCCCEEEEECCCCHHHHHHHHHCCCCEEEECC
Confidence 445555555545568988999998874 34455554442 4787777665555444343333223344433
No 390
>cd06330 PBP1_Arsenic_SBP_like Periplasmic solute-binding domain of active transport proteins. Periplasmic solute-binding domain of active transport proteins found in bacteria and Archaea that is predicted to be involved in the efflux of toxic compounds. Members of this subgroup include proteins from Herminiimonas arsenicoxydans, which is resistant to arsenic and various heavy metals such as cadmium and zinc. Moreover, they show significant sequence similarity to the cluster of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa.
Probab=42.27 E-value=86 Score=27.37 Aligned_cols=50 Identities=14% Similarity=0.103 Sum_probs=33.9
Q ss_pred CchhHHHhhhhcCCCCEEEEEcCChHHHHHHHHHHHhcCC--C-EEEEcCCCCH
Q 028115 44 SDRESVLASVFDKYPNMIVVDYTVPAAVNGNAELYSKVGV--P-FVMGTTGGDR 94 (213)
Q Consensus 44 ~~~~~~l~~~~~~~~d~VvIDFS~p~~~~~~~~~~~~~g~--~-~ViGTTG~~~ 94 (213)
.|....+.++...+|| ++|=+..+......++.+.+.|. . .+++++++..
T Consensus 182 ~d~~~~v~~i~~~~~d-~ii~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 234 (346)
T cd06330 182 PDYGSEITALLAAKPD-AIFSSLWGGDLVTFVRQANARGLFDGTTVVLTLTGAP 234 (346)
T ss_pred cccHHHHHHHHhcCCC-EEEEecccccHHHHHHHHHhcCcccCceEEeeccchh
Confidence 4666667777677899 55555556667888899988876 2 4555555543
No 391
>PRK07074 short chain dehydrogenase; Provisional
Probab=42.27 E-value=1.8e+02 Score=24.13 Aligned_cols=73 Identities=15% Similarity=0.101 Sum_probs=44.5
Q ss_pred ChHHHHHHHHhCCCeEEEEecCCCccccccccccCceeEeecCCchhHHHhhhhcCCCCEEEEEcCChHHHHHHHHHHHh
Q 028115 1 MGKAVIKAADAAGLELVPVSFGTEEESGQKVEVCGKEIQVHGLSDRESVLASVFDKYPNMIVVDYTVPAAVNGNAELYSK 80 (213)
Q Consensus 1 MG~~i~~~~~~~~~elv~~~~~~~~~~g~~~~~~~~~v~i~~~~~~~~~l~~~~~~~~d~VvIDFS~p~~~~~~~~~~~~ 80 (213)
.|+.+++.+.+.|.+++.. ++.+. ..+....++....+..+-.|++.++.+...+..+.+
T Consensus 14 iG~~la~~L~~~g~~v~~~-~r~~~-------------------~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 73 (257)
T PRK07074 14 IGQALARRFLAAGDRVLAL-DIDAA-------------------ALAAFADALGDARFVPVACDLTDAASLAAALANAAA 73 (257)
T ss_pred HHHHHHHHHHHCCCEEEEE-eCCHH-------------------HHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHH
Confidence 4788888888788887653 33221 111111111111233357899999998888877655
Q ss_pred c--CCCEEEEcCCCC
Q 028115 81 V--GVPFVMGTTGGD 93 (213)
Q Consensus 81 ~--g~~~ViGTTG~~ 93 (213)
. ++..|+-..|..
T Consensus 74 ~~~~~d~vi~~ag~~ 88 (257)
T PRK07074 74 ERGPVDVLVANAGAA 88 (257)
T ss_pred HcCCCCEEEECCCCC
Confidence 3 477888888853
No 392
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=42.25 E-value=70 Score=30.26 Aligned_cols=42 Identities=21% Similarity=0.211 Sum_probs=26.7
Q ss_pred HHHHHHhc-CCCEEEEcCCC-CHHHHHHHHHccCCcEEEccChh
Q 028115 74 NAELYSKV-GVPFVMGTTGG-DRVRLHETIENSNVYAVISPQMG 115 (213)
Q Consensus 74 ~~~~~~~~-g~~~ViGTTG~-~~~~~~~~~~~~~~~~v~a~N~S 115 (213)
..+...+. ++|+++...|. ..++.+++.+.+++|++-+|--+
T Consensus 393 l~~~~~~~~~KPvv~~~~gg~~~~~~~~~L~~~Gip~f~~p~~A 436 (447)
T TIGR02717 393 IIEGAKKSNEKPVVAGFMGGKSVDPAKRILEENGIPNYTFPERA 436 (447)
T ss_pred HHHHHHhcCCCcEEEEecCCccHHHHHHHHHhCCCCccCCHHHH
Confidence 33344445 88998888874 44555564456679988776543
No 393
>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional
Probab=42.22 E-value=1e+02 Score=25.83 Aligned_cols=72 Identities=11% Similarity=0.134 Sum_probs=42.0
Q ss_pred ChHHHHHHHHhCCCeEEEEecCCCccccccccccCceeEeecCCchhHHHhhhhc---CCCCEEEEEcCChHHHHHHHHH
Q 028115 1 MGKAVIKAADAAGLELVPVSFGTEEESGQKVEVCGKEIQVHGLSDRESVLASVFD---KYPNMIVVDYTVPAAVNGNAEL 77 (213)
Q Consensus 1 MG~~i~~~~~~~~~elv~~~~~~~~~~g~~~~~~~~~v~i~~~~~~~~~l~~~~~---~~~d~VvIDFS~p~~~~~~~~~ 77 (213)
+|+.+++.+.+.|..|+....+..+ .++....++.. .....+..|+|.++.+...++.
T Consensus 20 IG~~ia~~l~~~G~~v~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 80 (260)
T PRK08416 20 IGKAIVYEFAQSGVNIAFTYNSNVE-------------------EANKIAEDLEQKYGIKAKAYPLNILEPETYKELFKK 80 (260)
T ss_pred HHHHHHHHHHHCCCEEEEEcCCCHH-------------------HHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHH
Confidence 4888888888888887643222111 11111111111 1112357799999999999887
Q ss_pred HHhc--CCCEEEEcCC
Q 028115 78 YSKV--GVPFVMGTTG 91 (213)
Q Consensus 78 ~~~~--g~~~ViGTTG 91 (213)
..+. ++.+++-..|
T Consensus 81 ~~~~~g~id~lv~nAg 96 (260)
T PRK08416 81 IDEDFDRVDFFISNAI 96 (260)
T ss_pred HHHhcCCccEEEECcc
Confidence 7653 4667776554
No 394
>PRK13507 formate--tetrahydrofolate ligase; Provisional
Probab=42.19 E-value=1.1e+02 Score=30.27 Aligned_cols=99 Identities=14% Similarity=0.086 Sum_probs=64.5
Q ss_pred HHHHHHHHHhcCCCEEEEcCCCC---HHHHHH---HHHccCCcEEEccChhHHHHHHHHHHHHHHHhcC--CCCC-CCcE
Q 028115 71 VNGNAELYSKVGVPFVMGTTGGD---RVRLHE---TIENSNVYAVISPQMGKQVVAFLAAMEIMAEQFP--GAFS-GYSL 141 (213)
Q Consensus 71 ~~~~~~~~~~~g~~~ViGTTG~~---~~~~~~---~~~~~~~~~v~a~N~SlGv~ll~~l~~~aa~~l~--~~~~-~~di 141 (213)
+..|++-..++|+|+|+.-.-|. ++|++. ++++.++++.+|.-|+-|-.=-..|++...+... ..|. -|+.
T Consensus 390 L~~Hi~n~~~fg~pvVVaiN~F~~Dt~~Ei~~l~~~~~~~g~~~~v~~~wa~GGeGa~eLA~~Vv~a~e~~s~fk~LYd~ 469 (587)
T PRK13507 390 LLHHIGTVKKSGINPVVCINAFYTDTHAEIAIVRRLAEQAGARVAVSRHWEKGGEGALELADAVIDACNEPNDFKFLYPL 469 (587)
T ss_pred HHHHHHHHHHcCCCeEEEeCCCCCCCHHHHHHHHHHHHHcCCCEEEechhhccchhHHHHHHHHHHHhhCcCCCcccCCC
Confidence 56788888999999999999985 455544 4555668899999999986655566655544332 1121 2443
Q ss_pred EE----------EeccCCCCCCchHHHHHHHHHHHhcC
Q 028115 142 QV----------LESHQAGKLDTSGTAKAVISCFQKLG 169 (213)
Q Consensus 142 eI----------~E~HH~~K~DaSGTA~~la~~~~~~~ 169 (213)
+. .|.-+...++-|--|.+=.+.++++|
T Consensus 470 ~~sI~EKIetIAkeIYGAdgVe~S~~A~kqLk~le~~g 507 (587)
T PRK13507 470 EMPLRERIETIAREVYGADGVSYTPEAEAKLKRLESDP 507 (587)
T ss_pred CCCHHHHHHHHHHHccCCCceeECHHHHHHHHHHHhcC
Confidence 32 24566666655777766555666664
No 395
>cd00532 MGS-like MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase, which catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The family also includes the C-terminal domain in carbamoyl phosphate synthetase (CPS) where it catalyzes the last phosphorylation of a coaboxyphosphate intermediate to form the product carbamoyl phosphate and may also play a regulatory role. This family also includes inosine monophosphate cyclohydrolase. The known structures in this family show a common phosphate binding site.
Probab=42.14 E-value=46 Score=25.07 Aligned_cols=36 Identities=14% Similarity=0.175 Sum_probs=20.1
Q ss_pred hhhhc-CCCCEEEEEcCChHH-------HHHHHHHHHhcCCCEEE
Q 028115 51 ASVFD-KYPNMIVVDYTVPAA-------VNGNAELYSKVGVPFVM 87 (213)
Q Consensus 51 ~~~~~-~~~d~VvIDFS~p~~-------~~~~~~~~~~~g~~~Vi 87 (213)
+-+.+ .+.| .||-|..|.. -+...+.|.++++|++.
T Consensus 61 ~~i~~~g~id-lVIn~~~~~~~~~~~~dg~~iRR~A~~~~Ip~~T 104 (112)
T cd00532 61 AAIAEKGKFD-VVINLRDPRRDRCTDEDGTALLRLARLYKIPVTT 104 (112)
T ss_pred HHHhCCCCEE-EEEEcCCCCcccccCCChHHHHHHHHHcCCCEEE
Confidence 33444 4566 5676665443 45555666666666654
No 396
>PRK08628 short chain dehydrogenase; Provisional
Probab=42.03 E-value=1.6e+02 Score=24.37 Aligned_cols=71 Identities=15% Similarity=0.092 Sum_probs=44.2
Q ss_pred ChHHHHHHHHhCCCeEEEEecCCCccccccccccCceeEeecCCchhHHHhhhhc--CCCCEEEEEcCChHHHHHHHHHH
Q 028115 1 MGKAVIKAADAAGLELVPVSFGTEEESGQKVEVCGKEIQVHGLSDRESVLASVFD--KYPNMIVVDYTVPAAVNGNAELY 78 (213)
Q Consensus 1 MG~~i~~~~~~~~~elv~~~~~~~~~~g~~~~~~~~~v~i~~~~~~~~~l~~~~~--~~~d~VvIDFS~p~~~~~~~~~~ 78 (213)
+|+.+++.+.+.|..++.. .+.+. .. +..+++.. .+...+..|++.++.+...++.+
T Consensus 19 iG~~la~~l~~~G~~v~~~-~r~~~-------------------~~-~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 77 (258)
T PRK08628 19 IGAAISLRLAEEGAIPVIF-GRSAP-------------------DD-EFAEELRALQPRAEFVQVDLTDDAQCRDAVEQT 77 (258)
T ss_pred HHHHHHHHHHHcCCcEEEE-cCChh-------------------hH-HHHHHHHhcCCceEEEEccCCCHHHHHHHHHHH
Confidence 4788888888788776643 22211 01 11111111 12233678999999999888876
Q ss_pred Hhc--CCCEEEEcCCC
Q 028115 79 SKV--GVPFVMGTTGG 92 (213)
Q Consensus 79 ~~~--g~~~ViGTTG~ 92 (213)
.+. ++..|+-..|.
T Consensus 78 ~~~~~~id~vi~~ag~ 93 (258)
T PRK08628 78 VAKFGRIDGLVNNAGV 93 (258)
T ss_pred HHhcCCCCEEEECCcc
Confidence 664 57899988884
No 397
>cd01540 PBP1_arabinose_binding Periplasmic L-arabinose-binding protein (ABP), a member of a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Periplasmic L-arabinose-binding protein (ABP), a member of a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. ABP is only involved in transport contrary to other related sugar-binding proteins such as the glucose/galactose-binding protein (GGBP) and the ribose-binding protein (RBP), both of which are involved in chemotaxis as well as transport. The periplasmic ABP consists of two alpha/beta globular domains connected by a three-stranded hinge, a Venus flytrap-like domain, which undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, ABP is homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR) and DNA-binding transcriptional repressors such a
Probab=42.01 E-value=1.2e+02 Score=25.52 Aligned_cols=38 Identities=5% Similarity=-0.192 Sum_probs=24.7
Q ss_pred hhhhcCCCCEEEEEcCChHHHHHHHHHHHhcCCCEEEE
Q 028115 51 ASVFDKYPNMIVVDYTVPAAVNGNAELYSKVGVPFVMG 88 (213)
Q Consensus 51 ~~~~~~~~d~VvIDFS~p~~~~~~~~~~~~~g~~~ViG 88 (213)
..+....+|.++|--+.++...+.++.+.+.|+|+|+-
T Consensus 48 ~~~~~~~~dgiii~~~~~~~~~~~~~~~~~~~iPvV~~ 85 (289)
T cd01540 48 DNLGAQGAKGFVICVPDVKLGPAIVAKAKAYNMKVVAV 85 (289)
T ss_pred HHHHHcCCCEEEEccCchhhhHHHHHHHHhCCCeEEEe
Confidence 33344578854442223445677789999999999854
No 398
>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional
Probab=42.01 E-value=1.4e+02 Score=24.44 Aligned_cols=73 Identities=7% Similarity=0.034 Sum_probs=42.4
Q ss_pred ChHHHHHHHHhCCCeEEEEecCCCccccccccccCceeEeecCCchhHHHhhhhcCC--CCEEEEEcCChHHHHHHHHHH
Q 028115 1 MGKAVIKAADAAGLELVPVSFGTEEESGQKVEVCGKEIQVHGLSDRESVLASVFDKY--PNMIVVDYTVPAAVNGNAELY 78 (213)
Q Consensus 1 MG~~i~~~~~~~~~elv~~~~~~~~~~g~~~~~~~~~v~i~~~~~~~~~l~~~~~~~--~d~VvIDFS~p~~~~~~~~~~ 78 (213)
+|+.+++.+.+.|.+++....+... ..++..+++.... ...+..|.+.++.+...++..
T Consensus 16 iG~~~a~~l~~~g~~v~~~~~r~~~-------------------~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 76 (250)
T PRK08063 16 IGKAIALRLAEEGYDIAVNYARSRK-------------------AAEETAEEIEALGRKALAVKANVGDVEKIKEMFAQI 76 (250)
T ss_pred HHHHHHHHHHHCCCEEEEEcCCCHH-------------------HHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHH
Confidence 4888898888888887653333221 0111111111111 222457889999888877766
Q ss_pred Hhc--CCCEEEEcCCC
Q 028115 79 SKV--GVPFVMGTTGG 92 (213)
Q Consensus 79 ~~~--g~~~ViGTTG~ 92 (213)
.+. ++.+|+-..|.
T Consensus 77 ~~~~~~id~vi~~ag~ 92 (250)
T PRK08063 77 DEEFGRLDVFVNNAAS 92 (250)
T ss_pred HHHcCCCCEEEECCCC
Confidence 543 46788877773
No 399
>TIGR00167 cbbA ketose-bisphosphate aldolases. fructose-bisphosphate and tagatose-bisphosphate aldolase.
Probab=41.99 E-value=1.2e+02 Score=27.14 Aligned_cols=35 Identities=9% Similarity=0.053 Sum_probs=25.4
Q ss_pred CCCEEEEEcCChHHHHHHHHHHHhcCCCEEEEcCC
Q 028115 57 YPNMIVVDYTVPAAVNGNAELYSKVGVPFVMGTTG 91 (213)
Q Consensus 57 ~~d~VvIDFS~p~~~~~~~~~~~~~g~~~ViGTTG 91 (213)
+.-+-.+++.+.+.+...++.|.+.+.|+++-++-
T Consensus 17 ~yAV~AfN~~n~e~~~avi~AAee~~sPvIlq~~~ 51 (288)
T TIGR00167 17 GYAIPAFNINNLETINAVLEAAAEEKSPVIIQFSN 51 (288)
T ss_pred CceEEEEEECCHHHHHHHHHHHHHHCCCEEEECCc
Confidence 33335677777888888888888888888887644
No 400
>cd06316 PBP1_ABC_sugar_binding_like_7 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=41.95 E-value=1.3e+02 Score=25.49 Aligned_cols=35 Identities=17% Similarity=0.445 Sum_probs=23.6
Q ss_pred hhhcCCCCEEEEEcCC-hHHHHHHHHHHHhcCCCEEE
Q 028115 52 SVFDKYPNMIVVDYTV-PAAVNGNAELYSKVGVPFVM 87 (213)
Q Consensus 52 ~~~~~~~d~VvIDFS~-p~~~~~~~~~~~~~g~~~Vi 87 (213)
.+....+|.++| ++. ++...+.++.+.+.|+|+|+
T Consensus 51 ~~~~~~~dgiii-~~~~~~~~~~~i~~~~~~~iPvV~ 86 (294)
T cd06316 51 TTISQKPDIIIS-IPVDPVSTAAAYKKVAEAGIKLVF 86 (294)
T ss_pred HHHHhCCCEEEE-cCCCchhhhHHHHHHHHcCCcEEE
Confidence 333457884444 554 34457788999999999876
No 401
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=41.93 E-value=86 Score=26.23 Aligned_cols=33 Identities=15% Similarity=0.232 Sum_probs=15.9
Q ss_pred CCCEEEEEcCC---h--HHHHHHHHHHHh-cCCCEEEEc
Q 028115 57 YPNMIVVDYTV---P--AAVNGNAELYSK-VGVPFVMGT 89 (213)
Q Consensus 57 ~~d~VvIDFS~---p--~~~~~~~~~~~~-~g~~~ViGT 89 (213)
.+|.|++|... | +.+.+.++.+.+ .+++++.++
T Consensus 88 Gad~I~~d~~~~~~p~~~~~~~~i~~~~~~~~i~vi~~v 126 (221)
T PRK01130 88 GADIIALDATLRPRPDGETLAELVKRIKEYPGQLLMADC 126 (221)
T ss_pred CCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCeEEEeC
Confidence 44444445443 3 444555555555 455555443
No 402
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=41.92 E-value=71 Score=30.67 Aligned_cols=51 Identities=14% Similarity=0.318 Sum_probs=40.8
Q ss_pred eeEeecCCchhHHHhhhhcCCCCEEEEE-----cCC------------hHHHHHHHHHHHhcCCCEEE
Q 028115 37 EIQVHGLSDRESVLASVFDKYPNMIVVD-----YTV------------PAAVNGNAELYSKVGVPFVM 87 (213)
Q Consensus 37 ~v~i~~~~~~~~~l~~~~~~~~d~VvID-----FS~------------p~~~~~~~~~~~~~g~~~Vi 87 (213)
.+.+....+++..++.+.+.+||.|||| ||. -+++.+.+++|..+++++++
T Consensus 148 ~l~l~aEt~~e~I~~~l~~~~p~lvVIDSIQT~~s~~~~SapGsVsQVRe~t~~L~~~AK~~~i~~fi 215 (456)
T COG1066 148 NLYLLAETNLEDIIAELEQEKPDLVVIDSIQTLYSEEITSAPGSVSQVREVAAELMRLAKTKNIAIFI 215 (456)
T ss_pred ceEEehhcCHHHHHHHHHhcCCCEEEEeccceeecccccCCCCcHHHHHHHHHHHHHHHHHcCCeEEE
Confidence 4666666788888888888899988999 332 26788899999999999877
No 403
>PF12738 PTCB-BRCT: twin BRCT domain; PDB: 3PA6_A 3KTF_C 2WT8_C 3EF1_A 3EF0_A.
Probab=41.85 E-value=3.6 Score=27.65 Aligned_cols=31 Identities=10% Similarity=-0.041 Sum_probs=15.7
Q ss_pred EEEEcCCCCHHHHHHHHHccC-CcEEEccChh
Q 028115 85 FVMGTTGGDRVRLHETIENSN-VYAVISPQMG 115 (213)
Q Consensus 85 ~ViGTTG~~~~~~~~~~~~~~-~~~v~a~N~S 115 (213)
++|..|||+..+.+.+.+... .+.-++.||+
T Consensus 1 ~~i~~sg~~~~~~~~l~~~i~~~Gg~~~~~lt 32 (63)
T PF12738_consen 1 VVICFSGFSGKERSQLRKLIEALGGKYSKDLT 32 (63)
T ss_dssp -EEEEEEB-TTTCCHHHHHHHCTT-EEESSSS
T ss_pred CEEEECCCCHHHHHHHHHHHHHCCCEEecccc
Confidence 578889988654433333322 4555555554
No 404
>PRK12744 short chain dehydrogenase; Provisional
Probab=41.85 E-value=1.8e+02 Score=24.21 Aligned_cols=32 Identities=22% Similarity=0.154 Sum_probs=26.1
Q ss_pred EEEEcCChHHHHHHHHHHHhc--CCCEEEEcCCC
Q 028115 61 IVVDYTVPAAVNGNAELYSKV--GVPFVMGTTGG 92 (213)
Q Consensus 61 VvIDFS~p~~~~~~~~~~~~~--g~~~ViGTTG~ 92 (213)
+-.|++.++.+...++.+.+. ++.+++-..|.
T Consensus 66 ~~~D~~~~~~~~~~~~~~~~~~~~id~li~~ag~ 99 (257)
T PRK12744 66 FQADLTTAAAVEKLFDDAKAAFGRPDIAINTVGK 99 (257)
T ss_pred EecCcCCHHHHHHHHHHHHHhhCCCCEEEECCcc
Confidence 467999999999998887664 57788888885
No 405
>PRK11320 prpB 2-methylisocitrate lyase; Provisional
Probab=41.80 E-value=2.6e+02 Score=25.14 Aligned_cols=57 Identities=19% Similarity=0.181 Sum_probs=35.9
Q ss_pred CCCCEEEEEcCChHHHHHHHHHHHhcCCCEEE-----EcCC-CCHHHHHHHHHccCCcEEEccChhHHH
Q 028115 56 KYPNMIVVDYTVPAAVNGNAELYSKVGVPFVM-----GTTG-GDRVRLHETIENSNVYAVISPQMGKQV 118 (213)
Q Consensus 56 ~~~d~VvIDFS~p~~~~~~~~~~~~~g~~~Vi-----GTTG-~~~~~~~~~~~~~~~~~v~a~N~SlGv 118 (213)
..+|.|.|.. +....+.-+++.+.++|++. |.|+ ++.+++.+ .++..+.-||+.+-.
T Consensus 178 AGAD~ifi~~--~~~~~~i~~~~~~~~~Pl~~n~~~~~~~p~~s~~~L~~----lGv~~v~~~~~~~~a 240 (292)
T PRK11320 178 AGADMIFPEA--MTELEMYRRFADAVKVPILANITEFGATPLFTTEELAS----AGVAMVLYPLSAFRA 240 (292)
T ss_pred cCCCEEEecC--CCCHHHHHHHHHhcCCCEEEEeccCCCCCCCCHHHHHH----cCCcEEEEChHHHHH
Confidence 4678777775 55566666777778899844 3333 24555443 377777777766543
No 406
>PF07287 DUF1446: Protein of unknown function (DUF1446); InterPro: IPR010839 This family consists of several bacterial and plant proteins of around 400 residues in length. The function of this family is unknown.
Probab=41.74 E-value=52 Score=30.66 Aligned_cols=46 Identities=11% Similarity=0.089 Sum_probs=33.8
Q ss_pred hHHHHHHHHHHHhcCCCEEEEcCCCCHH----HHHHHHHccC----CcEEEccC
Q 028115 68 PAAVNGNAELYSKVGVPFVMGTTGGDRV----RLHETIENSN----VYAVISPQ 113 (213)
Q Consensus 68 p~~~~~~~~~~~~~g~~~ViGTTG~~~~----~~~~~~~~~~----~~~v~a~N 113 (213)
.+.+...+..|.++|+|+|+++-|.+.. .+++++++.+ +.+|.+=+
T Consensus 57 ~~~L~~~L~~~~~~gIkvI~NaGg~np~~~a~~v~eia~e~Gl~lkvA~V~gDd 110 (362)
T PF07287_consen 57 VRDLRPLLPAAAEKGIKVITNAGGLNPAGCADIVREIARELGLSLKVAVVYGDD 110 (362)
T ss_pred HHHHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHHHHHhcCCCeeEEEEECcc
Confidence 3478889999999999999999999864 4566666543 44555443
No 407
>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall
Probab=41.72 E-value=96 Score=27.72 Aligned_cols=35 Identities=9% Similarity=0.054 Sum_probs=24.6
Q ss_pred CCCCEEEEEcCC-hHHHHHHHHHHH-hcCCCEEEEcCC
Q 028115 56 KYPNMIVVDYTV-PAAVNGNAELYS-KVGVPFVMGTTG 91 (213)
Q Consensus 56 ~~~d~VvIDFS~-p~~~~~~~~~~~-~~g~~~ViGTTG 91 (213)
..+| ++||++- +..+...++.+. ..|.-+.+|.+.
T Consensus 252 ~~~d-~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~ 288 (365)
T cd05279 252 GGVD-YAFEVIGSADTLKQALDATRLGGGTSVVVGVPP 288 (365)
T ss_pred CCCc-EEEECCCCHHHHHHHHHHhccCCCEEEEEecCC
Confidence 3577 8999984 577777777776 666666677654
No 408
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=41.64 E-value=1.8e+02 Score=24.03 Aligned_cols=72 Identities=14% Similarity=0.160 Sum_probs=43.9
Q ss_pred ChHHHHHHHHhCCCeEEEEecCCCccccccccccCceeEeecCCchhHHHhhhhcC--CCCEEEEEcCChHHHHHHHHHH
Q 028115 1 MGKAVIKAADAAGLELVPVSFGTEEESGQKVEVCGKEIQVHGLSDRESVLASVFDK--YPNMIVVDYTVPAAVNGNAELY 78 (213)
Q Consensus 1 MG~~i~~~~~~~~~elv~~~~~~~~~~g~~~~~~~~~v~i~~~~~~~~~l~~~~~~--~~d~VvIDFS~p~~~~~~~~~~ 78 (213)
+|+.+++.+.+.|..|+.. ++.++ .+++..+++... ....+..|++.++.+...++.+
T Consensus 23 IG~~la~~l~~~G~~v~~~-~r~~~-------------------~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~ 82 (256)
T PRK06124 23 LGFEIARALAGAGAHVLVN-GRNAA-------------------TLEAAVAALRAAGGAAEALAFDIADEEAVAAAFARI 82 (256)
T ss_pred HHHHHHHHHHHcCCeEEEE-eCCHH-------------------HHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHH
Confidence 3778888777778877643 32211 111212222111 2333567999999999988887
Q ss_pred Hhc--CCCEEEEcCCC
Q 028115 79 SKV--GVPFVMGTTGG 92 (213)
Q Consensus 79 ~~~--g~~~ViGTTG~ 92 (213)
.+. ++..||-..|.
T Consensus 83 ~~~~~~id~vi~~ag~ 98 (256)
T PRK06124 83 DAEHGRLDILVNNVGA 98 (256)
T ss_pred HHhcCCCCEEEECCCC
Confidence 662 46788888885
No 409
>PRK06841 short chain dehydrogenase; Provisional
Probab=41.41 E-value=1.9e+02 Score=23.87 Aligned_cols=32 Identities=13% Similarity=0.231 Sum_probs=26.0
Q ss_pred EEEEcCChHHHHHHHHHHHhc--CCCEEEEcCCC
Q 028115 61 IVVDYTVPAAVNGNAELYSKV--GVPFVMGTTGG 92 (213)
Q Consensus 61 VvIDFS~p~~~~~~~~~~~~~--g~~~ViGTTG~ 92 (213)
+..|++.++.+...++.+.+. ++..||-..|.
T Consensus 66 ~~~Dl~~~~~~~~~~~~~~~~~~~~d~vi~~ag~ 99 (255)
T PRK06841 66 LVCDVSDSQSVEAAVAAVISAFGRIDILVNSAGV 99 (255)
T ss_pred EEecCCCHHHHHHHHHHHHHHhCCCCEEEECCCC
Confidence 578999999999888877663 67888888885
No 410
>PLN02759 Formate--tetrahydrofolate ligase
Probab=41.28 E-value=1.6e+02 Score=29.56 Aligned_cols=100 Identities=20% Similarity=0.193 Sum_probs=68.9
Q ss_pred HHHHHHHHHhcCCCEEEEcCCCC---HHHHHH---HHHccC-CcEEEccChhHHHHHHHHHHHHHHHhcCC---CC-CCC
Q 028115 71 VNGNAELYSKVGVPFVMGTTGGD---RVRLHE---TIENSN-VYAVISPQMGKQVVAFLAAMEIMAEQFPG---AF-SGY 139 (213)
Q Consensus 71 ~~~~~~~~~~~g~~~ViGTTG~~---~~~~~~---~~~~~~-~~~v~a~N~SlGv~ll~~l~~~aa~~l~~---~~-~~~ 139 (213)
+..|++-+.++|+|+|+.---|. ++|++. .+++.+ +++++|.-|+-|-.=-..|++...+.... .| .-|
T Consensus 439 L~~Hi~n~~~fg~pvVVaiN~F~~Dt~~Ei~~v~~~~~~~ga~~~~~~~~wa~GGeGa~eLA~~Vv~a~e~~~s~fk~LY 518 (637)
T PLN02759 439 LARHIENTKSYGVNVVVAINMFATDTEAELEAVRQAALAAGAFDAVLCTHHAHGGKGAVDLGEAVQKACEGNSQPFKFLY 518 (637)
T ss_pred HHHHHHHHHHcCCCeEEEecCCCCCCHHHHHHHHHHHHHcCCCcEEEechhhcccHHHHHHHHHHHHHHhcCCCCccccC
Confidence 46688888999999999999995 455544 455567 69999999999876666666655444321 12 124
Q ss_pred cEEE----------EeccCCCCCCchHHHHHHHHHHHhcCC
Q 028115 140 SLQV----------LESHQAGKLDTSGTAKAVISCFQKLGV 170 (213)
Q Consensus 140 dieI----------~E~HH~~K~DaSGTA~~la~~~~~~~~ 170 (213)
+.+- .|.-+..+++-|-.|.+=.+.++++|+
T Consensus 519 d~~~sI~eKIetIAkeIYGAd~VefS~~AkkqLk~ie~lGf 559 (637)
T PLN02759 519 PLDISIKEKIEAIAKESYGADGVEYSEQAEAQIEMYTRQGF 559 (637)
T ss_pred CCCCCHHHHHHHHHHHccCCCceEECHHHHHHHHHHHHcCC
Confidence 4332 356777777778888876667777764
No 411
>cd01538 PBP1_ABC_xylose_binding Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic xylose-binding protein is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=41.22 E-value=1.6e+02 Score=25.02 Aligned_cols=39 Identities=15% Similarity=0.254 Sum_probs=25.6
Q ss_pred HhhhhcCCCCEEEEEcCChHHHHHHHHHHHhcCCCEEEE
Q 028115 50 LASVFDKYPNMIVVDYTVPAAVNGNAELYSKVGVPFVMG 88 (213)
Q Consensus 50 l~~~~~~~~d~VvIDFS~p~~~~~~~~~~~~~g~~~ViG 88 (213)
+..+....+|.+++-=+.++...+.++.+.+.|+|+|.-
T Consensus 48 i~~~~~~~vdgiii~~~~~~~~~~~l~~l~~~~ipvV~~ 86 (288)
T cd01538 48 IENMIAKGVDVLVIAPVDGEALASAVEKAADAGIPVIAY 86 (288)
T ss_pred HHHHHHcCCCEEEEecCChhhHHHHHHHHHHCCCCEEEE
Confidence 344444578943433234555677888888999998875
No 412
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=41.14 E-value=1.1e+02 Score=26.33 Aligned_cols=33 Identities=18% Similarity=0.306 Sum_probs=21.8
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHhcCCCEEEEcC
Q 028115 57 YPNMIVVDYT-VPAAVNGNAELYSKVGVPFVMGTT 90 (213)
Q Consensus 57 ~~d~VvIDFS-~p~~~~~~~~~~~~~g~~~ViGTT 90 (213)
.+| ++||++ .+..+...++.....|.=+.+|..
T Consensus 187 g~d-~vid~~G~~~~~~~~~~~l~~~G~iv~~G~~ 220 (280)
T TIGR03366 187 GVD-VALEFSGATAAVRACLESLDVGGTAVLAGSV 220 (280)
T ss_pred CCC-EEEECCCChHHHHHHHHHhcCCCEEEEeccC
Confidence 467 788877 456666666666666666667753
No 413
>PRK08177 short chain dehydrogenase; Provisional
Probab=41.10 E-value=2e+02 Score=23.47 Aligned_cols=69 Identities=10% Similarity=0.139 Sum_probs=45.0
Q ss_pred ChHHHHHHHHhCCCeEEEEecCCCccccccccccCceeEeecCCchhHHHhhhhcCCCCEEEEEcCChHHHHHHHHHHHh
Q 028115 1 MGKAVIKAADAAGLELVPVSFGTEEESGQKVEVCGKEIQVHGLSDRESVLASVFDKYPNMIVVDYTVPAAVNGNAELYSK 80 (213)
Q Consensus 1 MG~~i~~~~~~~~~elv~~~~~~~~~~g~~~~~~~~~v~i~~~~~~~~~l~~~~~~~~d~VvIDFS~p~~~~~~~~~~~~ 80 (213)
+|+.+++.+.+.|.+|+.. ++.+. +.++ +.+.. ......+|++.++.+...++.+.+
T Consensus 13 iG~~la~~l~~~G~~V~~~-~r~~~-------------------~~~~-~~~~~--~~~~~~~D~~d~~~~~~~~~~~~~ 69 (225)
T PRK08177 13 LGLGLVDRLLERGWQVTAT-VRGPQ-------------------QDTA-LQALP--GVHIEKLDMNDPASLDQLLQRLQG 69 (225)
T ss_pred HHHHHHHHHHhCCCEEEEE-eCCCc-------------------chHH-HHhcc--ccceEEcCCCCHHHHHHHHHHhhc
Confidence 4888999888888887753 33221 1111 11111 122256799999999988888776
Q ss_pred cCCCEEEEcCCC
Q 028115 81 VGVPFVMGTTGG 92 (213)
Q Consensus 81 ~g~~~ViGTTG~ 92 (213)
.++.+|+=..|.
T Consensus 70 ~~id~vi~~ag~ 81 (225)
T PRK08177 70 QRFDLLFVNAGI 81 (225)
T ss_pred CCCCEEEEcCcc
Confidence 678999977765
No 414
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=41.01 E-value=77 Score=28.51 Aligned_cols=59 Identities=20% Similarity=0.123 Sum_probs=34.9
Q ss_pred chhHHHhhhhcCCCCEEEEEc--------CChHHHHHHHHHHH-hcCCCEEE-EcCCCCHHHHHHHHHc
Q 028115 45 DRESVLASVFDKYPNMIVVDY--------TVPAAVNGNAELYS-KVGVPFVM-GTTGGDRVRLHETIEN 103 (213)
Q Consensus 45 ~~~~~l~~~~~~~~d~VvIDF--------S~p~~~~~~~~~~~-~~g~~~Vi-GTTG~~~~~~~~~~~~ 103 (213)
|++++..=.....+|...|-| ..|.--.+.++... +.++|+|+ |+||..++++++..+.
T Consensus 156 ~peea~~Fv~~TgvD~LAvaiGt~HG~Y~~~p~Ldfd~l~~I~~~~~vPLVLHGgSG~~~e~~~kai~~ 224 (286)
T PRK12738 156 DPQEAKRFVELTGVDSLAVAIGTAHGLYSKTPKIDFQRLAEIREVVDVPLVLHGASDVPDEFVRRTIEL 224 (286)
T ss_pred CHHHHHHHHHHhCCCEEEeccCcccCCCCCCCcCCHHHHHHHHHHhCCCEEEeCCCCCCHHHHHHHHHc
Confidence 555554333345677556666 33444334443322 34889887 8999988888776553
No 415
>PRK09134 short chain dehydrogenase; Provisional
Probab=40.97 E-value=2e+02 Score=23.96 Aligned_cols=73 Identities=14% Similarity=0.133 Sum_probs=43.9
Q ss_pred ChHHHHHHHHhCCCeEEEEecCCCccccccccccCceeEeecCCchhHHHhhhhcCC--CCEEEEEcCChHHHHHHHHHH
Q 028115 1 MGKAVIKAADAAGLELVPVSFGTEEESGQKVEVCGKEIQVHGLSDRESVLASVFDKY--PNMIVVDYTVPAAVNGNAELY 78 (213)
Q Consensus 1 MG~~i~~~~~~~~~elv~~~~~~~~~~g~~~~~~~~~v~i~~~~~~~~~l~~~~~~~--~d~VvIDFS~p~~~~~~~~~~ 78 (213)
+|+.+++.+.++|..++....+..+ ..+.+.+.+.... ...+..|.+.++.+.+.++.+
T Consensus 21 iG~~la~~l~~~g~~v~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~ 81 (258)
T PRK09134 21 IGRAIALDLAAHGFDVAVHYNRSRD-------------------EAEALAAEIRALGRRAVALQADLADEAEVRALVARA 81 (258)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCCHH-------------------HHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHH
Confidence 4788888887888877654322110 1111111111111 222456999999999888877
Q ss_pred Hh--cCCCEEEEcCCC
Q 028115 79 SK--VGVPFVMGTTGG 92 (213)
Q Consensus 79 ~~--~g~~~ViGTTG~ 92 (213)
.+ -++.+|+-..|.
T Consensus 82 ~~~~~~iD~vi~~ag~ 97 (258)
T PRK09134 82 SAALGPITLLVNNASL 97 (258)
T ss_pred HHHcCCCCEEEECCcC
Confidence 65 347888888885
No 416
>PRK12828 short chain dehydrogenase; Provisional
Probab=40.97 E-value=1.9e+02 Score=23.27 Aligned_cols=72 Identities=14% Similarity=0.128 Sum_probs=42.8
Q ss_pred ChHHHHHHHHhCCCeEEEEecCCCccccccccccCceeEeecCCchhHHHhhhhcCCCCEEEEEcCChHHHHHHHHHHHh
Q 028115 1 MGKAVIKAADAAGLELVPVSFGTEEESGQKVEVCGKEIQVHGLSDRESVLASVFDKYPNMIVVDYTVPAAVNGNAELYSK 80 (213)
Q Consensus 1 MG~~i~~~~~~~~~elv~~~~~~~~~~g~~~~~~~~~v~i~~~~~~~~~l~~~~~~~~d~VvIDFS~p~~~~~~~~~~~~ 80 (213)
.|+.+++.+.++|.+++.. ++.+. ...+.+.++.......+..|++.++.+...++.+.+
T Consensus 19 iG~~la~~l~~~G~~v~~~-~r~~~-------------------~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 78 (239)
T PRK12828 19 LGRATAAWLAARGARVALI-GRGAA-------------------PLSQTLPGVPADALRIGGIDLVDPQAARRAVDEVNR 78 (239)
T ss_pred HhHHHHHHHHHCCCeEEEE-eCChH-------------------hHHHHHHHHhhcCceEEEeecCCHHHHHHHHHHHHH
Confidence 3778888887778876543 33221 011111111112233467899999998888887665
Q ss_pred c--CCCEEEEcCCC
Q 028115 81 V--GVPFVMGTTGG 92 (213)
Q Consensus 81 ~--g~~~ViGTTG~ 92 (213)
. ++.+|+-..|.
T Consensus 79 ~~~~~d~vi~~ag~ 92 (239)
T PRK12828 79 QFGRLDALVNIAGA 92 (239)
T ss_pred HhCCcCEEEECCcc
Confidence 3 57788777774
No 417
>PRK05835 fructose-bisphosphate aldolase; Provisional
Probab=40.92 E-value=1.4e+02 Score=27.17 Aligned_cols=52 Identities=10% Similarity=0.074 Sum_probs=35.5
Q ss_pred CEEEEEcCChHHHHHHHHHHHhcCCCEEEEcCCCCH-----H----HHHHHHHccC-CcEEE
Q 028115 59 NMIVVDYTVPAAVNGNAELYSKVGVPFVMGTTGGDR-----V----RLHETIENSN-VYAVI 110 (213)
Q Consensus 59 d~VvIDFS~p~~~~~~~~~~~~~g~~~ViGTTG~~~-----~----~~~~~~~~~~-~~~v~ 110 (213)
-+-.+.+.+.+.+...++.|.+.+.|+++.++-... + -.+.+++.+. +||.+
T Consensus 18 aV~AfN~~n~e~~~avi~AAe~~~sPvIlq~s~~~~~~~g~~~~~~~~~~~a~~~~~VPVal 79 (307)
T PRK05835 18 GVGAFNFVNFEMLNAIFEAGNEENSPLFIQASEGAIKYMGIDMAVGMVKIMCERYPHIPVAL 79 (307)
T ss_pred eEEEEEECCHHHHHHHHHHHHHHCCCEEEEcCccHHhhCChHHHHHHHHHHHHhcCCCeEEE
Confidence 345778888888888888888888888888754321 1 2334455564 78765
No 418
>cd01309 Met_dep_hydrolase_C Metallo-dependent hydrolases, subgroup C is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=40.91 E-value=1.4e+02 Score=27.11 Aligned_cols=54 Identities=6% Similarity=0.119 Sum_probs=39.6
Q ss_pred EEEEcCChHHHHHHHHHHHhcCCCEEEEcCCCCHHHHHHHHHccCCcEEEccChh
Q 028115 61 IVVDYTVPAAVNGNAELYSKVGVPFVMGTTGGDRVRLHETIENSNVYAVISPQMG 115 (213)
Q Consensus 61 VvIDFS~p~~~~~~~~~~~~~g~~~ViGTTG~~~~~~~~~~~~~~~~~v~a~N~S 115 (213)
|.+--.....+...++++.++|+++++.-.++....++++++ ++++++++|.+.
T Consensus 195 v~vHa~~~~~i~~~l~~~~e~g~~~~i~H~~~~~~~~~~la~-~gv~v~~~P~~~ 248 (359)
T cd01309 195 VRIHAHRADDILTAIRIAKEFGIKITIEHGAEGYKLADELAK-HGIPVIYGPTLT 248 (359)
T ss_pred EEEEeCCHHHHHHHHHHHHHcCCCEEEECchhHHHHHHHHHH-cCCCEEECcccc
Confidence 777778888888899999999999666444333555566654 579999888653
No 419
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=40.78 E-value=49 Score=30.31 Aligned_cols=33 Identities=12% Similarity=0.246 Sum_probs=24.6
Q ss_pred CCCCEEEEEcCCh-HHHHHHHHHHHhcCCCEEEEc
Q 028115 56 KYPNMIVVDYTVP-AAVNGNAELYSKVGVPFVMGT 89 (213)
Q Consensus 56 ~~~d~VvIDFS~p-~~~~~~~~~~~~~g~~~ViGT 89 (213)
..+| +|||-+.- +.-.-.-++|.++++|+|.|.
T Consensus 117 ~~~D-vVvd~~d~~~~r~~~n~~c~~~~ip~v~~~ 150 (355)
T PRK05597 117 RDAD-VILDGSDNFDTRHLASWAAARLGIPHVWAS 150 (355)
T ss_pred hCCC-EEEECCCCHHHHHHHHHHHHHcCCCEEEEE
Confidence 3678 89999844 444445678999999999863
No 420
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=40.63 E-value=57 Score=27.27 Aligned_cols=64 Identities=16% Similarity=0.086 Sum_probs=35.8
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHhcCCCEEEEcC-CCCHHHHHHHHHccCCcEEEc-cChhHHHHHHHHHHHHHHH
Q 028115 57 YPNMIVVDYT-VPAAVNGNAELYSKVGVPFVMGTT-GGDRVRLHETIENSNVYAVIS-PQMGKQVVAFLAAMEIMAE 130 (213)
Q Consensus 57 ~~d~VvIDFS-~p~~~~~~~~~~~~~g~~~ViGTT-G~~~~~~~~~~~~~~~~~v~a-~N~SlGv~ll~~l~~~aa~ 130 (213)
.+| ++||-+ .++.....-++|.++++|+|.+-+ ||.-.- ...+++ .+.-+|....+++++.+..
T Consensus 110 ~~d-vVi~~~~~~~~~~~ln~~c~~~~ip~i~~~~~G~~G~v---------~~d~~~p~~~~~~~~~~~e~~k~~~~ 176 (197)
T cd01492 110 QFD-VVVATELSRAELVKINELCRKLGVKFYATGVHGLFGFV---------FADLLAPVAAVVGGILAQDVINALSK 176 (197)
T ss_pred CCC-EEEECCCCHHHHHHHHHHHHHcCCCEEEEEecCCEEEE---------EEeccccHHHHHHHHHHHHHHHHHhC
Confidence 567 677655 455556666777888888776544 543100 001133 3456666666666666654
No 421
>TIGR03407 urea_ABC_UrtA urea ABC transporter, urea binding protein. Members of this protein family are ABC transporter substrate-binding proteins associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. Members of this protein family tend to have the twin-arginine signal for Sec-independent transport across the plasma membrane.
Probab=40.54 E-value=1.7e+02 Score=26.08 Aligned_cols=55 Identities=9% Similarity=0.109 Sum_probs=34.7
Q ss_pred CchhHHHhhhhcCCCCEEEEEcCChHHHHHHHHHHHhcCCC----EEEEcCCCCHHHHHHH
Q 028115 44 SDRESVLASVFDKYPNMIVVDYTVPAAVNGNAELYSKVGVP----FVMGTTGGDRVRLHET 100 (213)
Q Consensus 44 ~~~~~~l~~~~~~~~d~VvIDFS~p~~~~~~~~~~~~~g~~----~ViGTTG~~~~~~~~~ 100 (213)
.|+...+.++...+|| +|+=..........++.+.+.|.. .++|++ +....+..+
T Consensus 176 ~D~s~~v~~l~~~~pD-av~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~-~~~~~~~~~ 234 (359)
T TIGR03407 176 TDFQTIINKIKAFKPD-VVFNTLNGDSNVAFFKQLKNAGITAKDVPVVSFS-VAEEEIRGI 234 (359)
T ss_pred HhHHHHHHHHHHhCCC-EEEEeccCCCHHHHHHHHHHcCCCccCCcEEEee-cCHHHHhhc
Confidence 4667667777777899 455333444456778899999874 256655 334444444
No 422
>PF00582 Usp: Universal stress protein family; InterPro: IPR006016 The universal stress protein UspA P28242 from SWISSPROT [] is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA [] reveals an alpha/beta fold similar to that of the Methanocaldococcus jannaschii (Methanococcus jannaschii) MJ0577 protein, which binds ATP [], though UspA lacks ATP-binding activity.; GO: 0006950 response to stress; PDB: 3DLO_C 3QTB_A 2PFS_A 3TNJ_A 1JMV_D 3FH0_B 3FDX_B 3AB7_A 3AB8_A 2GM3_F ....
Probab=40.52 E-value=1.3e+02 Score=21.36 Aligned_cols=52 Identities=15% Similarity=0.205 Sum_probs=38.2
Q ss_pred EEEEcCChHHHHHHHHHHHhcCCC-EEEEcCCCC-------HHHHHHHHHccCCcEEEcc
Q 028115 61 IVVDYTVPAAVNGNAELYSKVGVP-FVMGTTGGD-------RVRLHETIENSNVYAVISP 112 (213)
Q Consensus 61 VvIDFS~p~~~~~~~~~~~~~g~~-~ViGTTG~~-------~~~~~~~~~~~~~~~v~a~ 112 (213)
..+-....+.....++++.+.+.. +|+|+.+.+ -.--+.+.+.+.+|+++.|
T Consensus 81 ~~~~~~~~~~~~~i~~~~~~~~~dliv~G~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~ 140 (140)
T PF00582_consen 81 IEVVIESGDVADAIIEFAEEHNADLIVMGSRGRSGLERLLFGSVAEKLLRHAPCPVLVVP 140 (140)
T ss_dssp EEEEEEESSHHHHHHHHHHHTTCSEEEEESSSTTSTTTSSSHHHHHHHHHHTSSEEEEEE
T ss_pred eEEEEEeeccchhhhhccccccceeEEEeccCCCCccCCCcCCHHHHHHHcCCCCEEEeC
Confidence 456666777888899999999988 678999843 1234667777789988754
No 423
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=40.41 E-value=1.1e+02 Score=26.85 Aligned_cols=87 Identities=16% Similarity=0.092 Sum_probs=46.3
Q ss_pred ChHHHHHHHHhCCCeEEEEecCCCc-ccccc-ccccCceeEee-c-CCchhHHHhhhhcCCCCEEEEEcCChHHHHHHHH
Q 028115 1 MGKAVIKAADAAGLELVPVSFGTEE-ESGQK-VEVCGKEIQVH-G-LSDRESVLASVFDKYPNMIVVDYTVPAAVNGNAE 76 (213)
Q Consensus 1 MG~~i~~~~~~~~~elv~~~~~~~~-~~g~~-~~~~~~~v~i~-~-~~~~~~~l~~~~~~~~d~VvIDFS~p~~~~~~~~ 76 (213)
+|+++++.+...|.++++......+ ..-+. + |....+. . ..+..+.+........| +++|++....+.+.++
T Consensus 164 vG~~aiqlAk~~G~~Vi~~~~~~~~~~~~~~~l---Ga~~vi~~~~~~~~~~~i~~~~~~gvd-~v~d~~g~~~~~~~~~ 239 (338)
T cd08295 164 VGQLVGQLAKLKGCYVVGSAGSDEKVDLLKNKL---GFDDAFNYKEEPDLDAALKRYFPNGID-IYFDNVGGKMLDAVLL 239 (338)
T ss_pred HHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhc---CCceeEEcCCcccHHHHHHHhCCCCcE-EEEECCCHHHHHHHHH
Confidence 3778888888888887654322111 00000 1 1111111 1 11333333332223467 8899888777777777
Q ss_pred HHHhcCCCEEEEcCC
Q 028115 77 LYSKVGVPFVMGTTG 91 (213)
Q Consensus 77 ~~~~~g~~~ViGTTG 91 (213)
.....|.=+.+|..+
T Consensus 240 ~l~~~G~iv~~G~~~ 254 (338)
T cd08295 240 NMNLHGRIAACGMIS 254 (338)
T ss_pred HhccCcEEEEecccc
Confidence 777777766677543
No 424
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=40.38 E-value=1.7e+02 Score=24.28 Aligned_cols=72 Identities=17% Similarity=0.100 Sum_probs=44.9
Q ss_pred ChHHHHHHHHhCCCeEEEEecCCCccccccccccCceeEeecCCchhHHHhhhhcCCCC--EEEEEcCChHHHHHHHHHH
Q 028115 1 MGKAVIKAADAAGLELVPVSFGTEEESGQKVEVCGKEIQVHGLSDRESVLASVFDKYPN--MIVVDYTVPAAVNGNAELY 78 (213)
Q Consensus 1 MG~~i~~~~~~~~~elv~~~~~~~~~~g~~~~~~~~~v~i~~~~~~~~~l~~~~~~~~d--~VvIDFS~p~~~~~~~~~~ 78 (213)
+|+.+++.+.+.|.+++.. ++.+. ..++...++...... .+..|.+.++.+...+..+
T Consensus 21 iG~~ia~~L~~~G~~vvl~-~r~~~-------------------~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~ 80 (254)
T PRK08085 21 IGFLLATGLAEYGAEIIIN-DITAE-------------------RAELAVAKLRQEGIKAHAAPFNVTHKQEVEAAIEHI 80 (254)
T ss_pred HHHHHHHHHHHcCCEEEEE-cCCHH-------------------HHHHHHHHHHhcCCeEEEEecCCCCHHHHHHHHHHH
Confidence 4888888888888887743 22211 111112222111122 2457999999999998887
Q ss_pred Hhc--CCCEEEEcCCC
Q 028115 79 SKV--GVPFVMGTTGG 92 (213)
Q Consensus 79 ~~~--g~~~ViGTTG~ 92 (213)
.+. ++..|+-..|.
T Consensus 81 ~~~~~~id~vi~~ag~ 96 (254)
T PRK08085 81 EKDIGPIDVLINNAGI 96 (254)
T ss_pred HHhcCCCCEEEECCCc
Confidence 663 57899988885
No 425
>PRK09730 putative NAD(P)-binding oxidoreductase; Provisional
Probab=40.29 E-value=2e+02 Score=23.37 Aligned_cols=74 Identities=9% Similarity=0.025 Sum_probs=45.2
Q ss_pred ChHHHHHHHHhCCCeEEEEecCCCccccccccccCceeEeecCCchhHHHhhhhcCC--CCEEEEEcCChHHHHHHHHHH
Q 028115 1 MGKAVIKAADAAGLELVPVSFGTEEESGQKVEVCGKEIQVHGLSDRESVLASVFDKY--PNMIVVDYTVPAAVNGNAELY 78 (213)
Q Consensus 1 MG~~i~~~~~~~~~elv~~~~~~~~~~g~~~~~~~~~v~i~~~~~~~~~l~~~~~~~--~d~VvIDFS~p~~~~~~~~~~ 78 (213)
+|+.+++.+.+.|+.++....+.+. ..++...++.... ...+-.|.+.++.+...++.+
T Consensus 13 iG~~l~~~l~~~g~~v~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~D~~d~~~i~~~~~~~ 73 (247)
T PRK09730 13 IGRATALLLAQEGYTVAVNYQQNLH-------------------AAQEVVNLITQAGGKAFVLQADISDENQVVAMFTAI 73 (247)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCChH-------------------HHHHHHHHHHhCCCeEEEEEccCCCHHHHHHHHHHH
Confidence 4888998888888887643332211 1111111111111 123567999999999998887
Q ss_pred Hh--cCCCEEEEcCCCC
Q 028115 79 SK--VGVPFVMGTTGGD 93 (213)
Q Consensus 79 ~~--~g~~~ViGTTG~~ 93 (213)
.+ .++.+|+=..|+.
T Consensus 74 ~~~~~~id~vi~~ag~~ 90 (247)
T PRK09730 74 DQHDEPLAALVNNAGIL 90 (247)
T ss_pred HHhCCCCCEEEECCCCC
Confidence 65 3566888888853
No 426
>cd06281 PBP1_LacI_like_5 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=40.27 E-value=2.1e+02 Score=23.64 Aligned_cols=39 Identities=13% Similarity=0.095 Sum_probs=23.4
Q ss_pred HhhhhcCCCCEEEEEcCChHHHHHHHHHHHhcCCCEEEEc
Q 028115 50 LASVFDKYPNMIVVDYTVPAAVNGNAELYSKVGVPFVMGT 89 (213)
Q Consensus 50 l~~~~~~~~d~VvIDFS~p~~~~~~~~~~~~~g~~~ViGT 89 (213)
++.+....+|.+++-.+.++ ....++.+.+.++|+|.--
T Consensus 48 i~~l~~~~vdgii~~~~~~~-~~~~~~~~~~~~ipvV~i~ 86 (269)
T cd06281 48 LRSFEQRRMDGIIIAPGDER-DPELVDALASLDLPIVLLD 86 (269)
T ss_pred HHHHHHcCCCEEEEecCCCC-cHHHHHHHHhCCCCEEEEe
Confidence 33344456885555433332 2456777788899988764
No 427
>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional
Probab=40.24 E-value=1.7e+02 Score=27.12 Aligned_cols=99 Identities=13% Similarity=0.196 Sum_probs=56.4
Q ss_pred hHHHHHHHH-hCCCe---EEEEecCCCccccccccccCceeEeecCCchhHHHhhhhcCCCCEEEEEcCCh-HHHHHHHH
Q 028115 2 GKAVIKAAD-AAGLE---LVPVSFGTEEESGQKVEVCGKEIQVHGLSDRESVLASVFDKYPNMIVVDYTVP-AAVNGNAE 76 (213)
Q Consensus 2 G~~i~~~~~-~~~~e---lv~~~~~~~~~~g~~~~~~~~~v~i~~~~~~~~~l~~~~~~~~d~VvIDFS~p-~~~~~~~~ 76 (213)
|+.+++.+. +++++ |.... +....|+.+.+.+..+.+... +.+. + ...| ++=|+.| +...+...
T Consensus 18 G~ell~lL~~h~~f~v~~l~~~a--S~~saGk~~~~~~~~l~v~~~-~~~~-~-----~~~D--ivf~a~~~~~s~~~~~ 86 (347)
T PRK06728 18 GQKIIELLEKETKFNIAEVTLLS--SKRSAGKTVQFKGREIIIQEA-KINS-F-----EGVD--IAFFSAGGEVSRQFVN 86 (347)
T ss_pred HHHHHHHHHHCCCCCcccEEEEE--CcccCCCCeeeCCcceEEEeC-CHHH-h-----cCCC--EEEECCChHHHHHHHH
Confidence 899999998 79998 44332 223556666554444555432 2221 1 2467 3446555 45666777
Q ss_pred HHHhcCCCEEE-------------EcCCCCHHHHHHHHHccCCcEEEccChhH
Q 028115 77 LYSKVGVPFVM-------------GTTGGDRVRLHETIENSNVYAVISPQMGK 116 (213)
Q Consensus 77 ~~~~~g~~~Vi-------------GTTG~~~~~~~~~~~~~~~~~v~a~N~Sl 116 (213)
.+.+.|+++|= +...++.++++. . ..++-.||=+.
T Consensus 87 ~~~~~G~~VID~Ss~fR~~~~vplvvPEvN~e~i~~---~--~~iIanPnC~t 134 (347)
T PRK06728 87 QAVSSGAIVIDNTSEYRMAHDVPLVVPEVNAHTLKE---H--KGIIAVPNCSA 134 (347)
T ss_pred HHHHCCCEEEECchhhcCCCCCCeEeCCcCHHHHhc---c--CCEEECCCCHH
Confidence 77788875553 224445554432 1 35788899544
No 428
>PRK07411 hypothetical protein; Validated
Probab=40.19 E-value=44 Score=31.07 Aligned_cols=35 Identities=20% Similarity=0.030 Sum_probs=25.9
Q ss_pred CCCEEEEEcCChHHHHH-HHHHHHhcCCCEEEEc-CCC
Q 028115 57 YPNMIVVDYTVPAAVNG-NAELYSKVGVPFVMGT-TGG 92 (213)
Q Consensus 57 ~~d~VvIDFS~p~~~~~-~~~~~~~~g~~~ViGT-TG~ 92 (213)
.+| +|||-+..-.... .-+.|.+.++|+|.|. .||
T Consensus 128 ~~D-~Vvd~~d~~~~r~~ln~~~~~~~~p~v~~~~~g~ 164 (390)
T PRK07411 128 PYD-VVVDGTDNFPTRYLVNDACVLLNKPNVYGSIFRF 164 (390)
T ss_pred CCC-EEEECCCCHHHHHHHHHHHHHcCCCEEEEEEccC
Confidence 578 8999987655544 4478899999999863 344
No 429
>cd06332 PBP1_aromatic_compounds_like Type I periplasmic binding proteins of active transport systems that are predicted to be involved in transport of aromatic compounds such as 2-nitrobenzoic acid and alkylbenzenes. This group includes the type I periplasmic binding proteins of active transport systems that are predicted to be involved in transport of aromatic compounds such as 2-nitrobenzoic acid and alkylbenzenes; their substrate specificities are not well characterized, however. Members also exhibit close similarity to active transport systems for short chain amides and/or urea found in bacteria and archaea.
Probab=40.17 E-value=96 Score=26.58 Aligned_cols=51 Identities=16% Similarity=0.113 Sum_probs=35.2
Q ss_pred CchhHHHhhhhcCCCCEEEEEcCChHHHHHHHHHHHhcCC--C-EEEEcCCCCHH
Q 028115 44 SDRESVLASVFDKYPNMIVVDYTVPAAVNGNAELYSKVGV--P-FVMGTTGGDRV 95 (213)
Q Consensus 44 ~~~~~~l~~~~~~~~d~VvIDFS~p~~~~~~~~~~~~~g~--~-~ViGTTG~~~~ 95 (213)
.|+...+..+.+.+|| +|+=++.+......++.+.+.|. . .++|+..+..+
T Consensus 173 ~d~~~~i~~l~~~~~d-~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 226 (333)
T cd06332 173 LDFSAELAQIRAAKPD-AVFVFLPGGMAVNFVKQYDQAGLKKKIPLYGPGFLTDQ 226 (333)
T ss_pred cchHHHHHHHHhcCCC-EEEEecccchHHHHHHHHHHcCcccCCceeccCCCCCH
Confidence 4666666666667899 55556666677788999999887 4 35666665544
No 430
>PRK06172 short chain dehydrogenase; Provisional
Probab=40.11 E-value=1.9e+02 Score=23.81 Aligned_cols=72 Identities=18% Similarity=0.171 Sum_probs=43.2
Q ss_pred ChHHHHHHHHhCCCeEEEEecCCCccccccccccCceeEeecCCchhHHHhhhhcCC--CCEEEEEcCChHHHHHHHHHH
Q 028115 1 MGKAVIKAADAAGLELVPVSFGTEEESGQKVEVCGKEIQVHGLSDRESVLASVFDKY--PNMIVVDYTVPAAVNGNAELY 78 (213)
Q Consensus 1 MG~~i~~~~~~~~~elv~~~~~~~~~~g~~~~~~~~~v~i~~~~~~~~~l~~~~~~~--~d~VvIDFS~p~~~~~~~~~~ 78 (213)
+|+.+++.+.+.|.+++.. ++.+. ..++..+.+.... ...+..|.+.++.+.+.++.+
T Consensus 19 iG~~ia~~l~~~G~~v~~~-~r~~~-------------------~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~ 78 (253)
T PRK06172 19 IGRATALAFAREGAKVVVA-DRDAA-------------------GGEETVALIREAGGEALFVACDVTRDAEVKALVEQT 78 (253)
T ss_pred HHHHHHHHHHHcCCEEEEE-eCCHH-------------------HHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHH
Confidence 4788888888788886643 33221 1111111111111 222568999999999888877
Q ss_pred Hhc--CCCEEEEcCCC
Q 028115 79 SKV--GVPFVMGTTGG 92 (213)
Q Consensus 79 ~~~--g~~~ViGTTG~ 92 (213)
.+. ++..|+-..|+
T Consensus 79 ~~~~g~id~li~~ag~ 94 (253)
T PRK06172 79 IAAYGRLDYAFNNAGI 94 (253)
T ss_pred HHHhCCCCEEEECCCC
Confidence 554 56788877764
No 431
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=40.05 E-value=48 Score=29.26 Aligned_cols=24 Identities=21% Similarity=0.392 Sum_probs=15.6
Q ss_pred hHHHHHHHHHHHh-cCCC--EEEEcCC
Q 028115 68 PAAVNGNAELYSK-VGVP--FVMGTTG 91 (213)
Q Consensus 68 p~~~~~~~~~~~~-~g~~--~ViGTTG 91 (213)
.+++..+++++.+ .|+. +|.||||
T Consensus 23 ~~~~~~li~~l~~~~Gv~gi~v~GstG 49 (293)
T PRK04147 23 EQGLRRLVRFNIEKQGIDGLYVGGSTG 49 (293)
T ss_pred HHHHHHHHHHHHhcCCCCEEEECCCcc
Confidence 4566667777776 6665 4567776
No 432
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=40.00 E-value=1.5e+02 Score=24.94 Aligned_cols=72 Identities=17% Similarity=0.192 Sum_probs=44.0
Q ss_pred ChHHHHHHHHhCCCeEEEEecCCCccccccccccCceeEeecCCchhHHHhhhhcCC--CCEEEEEcCChHHHHHHHHHH
Q 028115 1 MGKAVIKAADAAGLELVPVSFGTEEESGQKVEVCGKEIQVHGLSDRESVLASVFDKY--PNMIVVDYTVPAAVNGNAELY 78 (213)
Q Consensus 1 MG~~i~~~~~~~~~elv~~~~~~~~~~g~~~~~~~~~v~i~~~~~~~~~l~~~~~~~--~d~VvIDFS~p~~~~~~~~~~ 78 (213)
+|+.+++.+.+.|..++.. ++... ..++..+++.... ...+..|++.++.+...++.+
T Consensus 22 iG~~ia~~l~~~G~~V~~~-~r~~~-------------------~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~ 81 (278)
T PRK08277 22 LGGAMAKELARAGAKVAIL-DRNQE-------------------KAEAVVAEIKAAGGEALAVKADVLDKESLEQARQQI 81 (278)
T ss_pred HHHHHHHHHHHCCCEEEEE-eCCHH-------------------HHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHH
Confidence 4788888887788876643 32211 1111112221111 123568999999999888877
Q ss_pred Hhc--CCCEEEEcCCC
Q 028115 79 SKV--GVPFVMGTTGG 92 (213)
Q Consensus 79 ~~~--g~~~ViGTTG~ 92 (213)
.+. ++.+||-.+|.
T Consensus 82 ~~~~g~id~li~~ag~ 97 (278)
T PRK08277 82 LEDFGPCDILINGAGG 97 (278)
T ss_pred HHHcCCCCEEEECCCC
Confidence 663 67899988884
No 433
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=39.99 E-value=61 Score=32.23 Aligned_cols=60 Identities=12% Similarity=0.093 Sum_probs=51.2
Q ss_pred EEEEcCChHHHHHHHHHHHhcCCCEEEEcCCCCHHHHHHHHHc---cCCcEEEccC-hhHHHHH
Q 028115 61 IVVDYTVPAAVNGNAELYSKVGVPFVMGTTGGDRVRLHETIEN---SNVYAVISPQ-MGKQVVA 120 (213)
Q Consensus 61 VvIDFS~p~~~~~~~~~~~~~g~~~ViGTTG~~~~~~~~~~~~---~~~~~v~a~N-~SlGv~l 120 (213)
-||=+++-..+.+..+...+.|+......-|++.++.+...++ .++++++|.| |..|+|.
T Consensus 233 GIIYc~sRk~~E~ia~~L~~~g~~a~~YHaGl~~~eR~~~q~~f~~~~~~iiVAT~AFGMGIdK 296 (590)
T COG0514 233 GIIYCLTRKKVEELAEWLRKNGISAGAYHAGLSNEERERVQQAFLNDEIKVMVATNAFGMGIDK 296 (590)
T ss_pred eEEEEeeHHhHHHHHHHHHHCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccCccCC
Confidence 5899999999999999999999999999999998776555543 3499999988 8888865
No 434
>TIGR00706 SppA_dom signal peptide peptidase SppA, 36K type. The member of this family from Bacillus subtilis was shown to have properties consistent with a role in degrading signal peptides after cleavage from precursor proteins, although it was not demonstrated conclusively.
Probab=39.96 E-value=1.3e+02 Score=25.05 Aligned_cols=102 Identities=17% Similarity=0.114 Sum_probs=55.1
Q ss_pred chhHHHhhhhc-CCCCEEEEEcCCh----HHHHHHHHHHHhc--CCCEEEEcCCCCHHHHHHHHHccCCcEEEccCh---
Q 028115 45 DRESVLASVFD-KYPNMIVVDYTVP----AAVNGNAELYSKV--GVPFVMGTTGGDRVRLHETIENSNVYAVISPQM--- 114 (213)
Q Consensus 45 ~~~~~l~~~~~-~~~d~VvIDFS~p----~~~~~~~~~~~~~--g~~~ViGTTG~~~~~~~~~~~~~~~~~v~a~N~--- 114 (213)
++.+.++++.. .....|++++.+| ....+..+...+. ++|+|.-..|+...-=-.++-.+. -++.+||-
T Consensus 17 ~l~~~l~~a~~d~~i~~vvl~~~s~Gg~~~~~~~l~~~i~~~~~~kpvia~v~g~a~s~g~~la~aaD-~i~a~p~a~vg 95 (207)
T TIGR00706 17 DFDKKIKRIKDDKSIKALLLRINSPGGTVVASEEIYEKLKKLKAKKPVVASMGGVAASGGYYIAMAAD-EIVANPGTITG 95 (207)
T ss_pred HHHHHHHHHhhCCCccEEEEEecCCCCCHHHHHHHHHHHHHhcCCCCEEEEECCccchHHHHHHhcCC-EEEECCCCeEE
Confidence 44444544432 1233578888766 3444444444444 599999888886421112222333 35667773
Q ss_pred hHHHHHHHHHHHHHHHhcCCCCCCCcEEEEeccCCCCCCc
Q 028115 115 GKQVVAFLAAMEIMAEQFPGAFSGYSLQVLESHQAGKLDT 154 (213)
Q Consensus 115 SlGv~ll~~l~~~aa~~l~~~~~~~dieI~E~HH~~K~Da 154 (213)
|+|+.+.....+.+.+.+ .+++.-.|....|++
T Consensus 96 ~iGv~~~~~~~~~~l~k~-------Gv~~~~~~~g~~K~~ 128 (207)
T TIGR00706 96 SIGVILQGANVEKLYEKL-------GIEFEVIKSGEYKDI 128 (207)
T ss_pred eeeEEEecCCHHHHHHhC-------CceEEEEEcCCCcCC
Confidence 666665544444444443 577666666666665
No 435
>PRK06949 short chain dehydrogenase; Provisional
Probab=39.94 E-value=1.8e+02 Score=23.94 Aligned_cols=33 Identities=9% Similarity=0.168 Sum_probs=25.5
Q ss_pred EEEEEcCChHHHHHHHHHHHhc--CCCEEEEcCCC
Q 028115 60 MIVVDYTVPAAVNGNAELYSKV--GVPFVMGTTGG 92 (213)
Q Consensus 60 ~VvIDFS~p~~~~~~~~~~~~~--g~~~ViGTTG~ 92 (213)
.+..|++.++.+...++.+.+. ++.+|+-..|.
T Consensus 62 ~~~~D~~~~~~~~~~~~~~~~~~~~~d~li~~ag~ 96 (258)
T PRK06949 62 VVSLDVTDYQSIKAAVAHAETEAGTIDILVNNSGV 96 (258)
T ss_pred EEEecCCCHHHHHHHHHHHHHhcCCCCEEEECCCC
Confidence 3678999999988888776554 56788888884
No 436
>PLN03176 flavanone-3-hydroxylase; Provisional
Probab=39.79 E-value=48 Score=25.68 Aligned_cols=38 Identities=21% Similarity=0.149 Sum_probs=23.0
Q ss_pred EEEcCChH--------HHHHHHHHHHhcCCCEEEEcCCCCHHHHHHH
Q 028115 62 VVDYTVPA--------AVNGNAELYSKVGVPFVMGTTGGDRVRLHET 100 (213)
Q Consensus 62 vIDFS~p~--------~~~~~~~~~~~~g~~~ViGTTG~~~~~~~~~ 100 (213)
+|||+... .+.+..+.|.+.|-=.|++ +|.+.+.++++
T Consensus 40 vIDls~~~~~~~~~~~~~~~L~~A~~~~GFf~l~n-hGi~~elid~~ 85 (120)
T PLN03176 40 VISIAGIDDGGEKRAEICNKIVEACEEWGVFQIVD-HGVDAKLVSEM 85 (120)
T ss_pred eEECccccCCchHHHHHHHHHHHHHHHCCEEEEEC-CCCCHHHHHHH
Confidence 68988532 4555666666677666665 46665544443
No 437
>PF11113 Phage_head_chap: Head assembly gene product; InterPro: IPR021049 This head assembly protein is also refereed to as gene product 40 (Gp40). A specific gp20-gp40 membrane insertion structure constitutes the T4 prohead assembly initiation complex [].
Probab=39.77 E-value=28 Score=23.98 Aligned_cols=22 Identities=18% Similarity=0.388 Sum_probs=18.0
Q ss_pred EEEEcCChHH-----HHHHHHHHHhcC
Q 028115 61 IVVDYTVPAA-----VNGNAELYSKVG 82 (213)
Q Consensus 61 VvIDFS~p~~-----~~~~~~~~~~~g 82 (213)
+.+|||+|+. +..+++.|+...
T Consensus 29 l~vdfsT~~e~~k~el~phVe~ci~~Q 55 (56)
T PF11113_consen 29 LKVDFSTPSEDRKEELAPHVEKCIQAQ 55 (56)
T ss_pred EEEEEeCCCcchhhHHHHHHHHHHhhc
Confidence 8999999865 788888888654
No 438
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=39.70 E-value=61 Score=27.07 Aligned_cols=32 Identities=9% Similarity=0.063 Sum_probs=13.7
Q ss_pred CCCEEEEcCCCCHH--HHHHHHHccCCcEEEccC
Q 028115 82 GVPFVMGTTGGDRV--RLHETIENSNVYAVISPQ 113 (213)
Q Consensus 82 g~~~ViGTTG~~~~--~~~~~~~~~~~~~v~a~N 113 (213)
+..+|+.++.--.. .+.+++...++|++.+.+
T Consensus 111 ~~D~Vi~~~d~~~~r~~l~~~~~~~~ip~i~~~~ 144 (202)
T TIGR02356 111 NVDLVLDCTDNFATRYLINDACVALGTPLISAAV 144 (202)
T ss_pred CCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEe
Confidence 34455555432211 233344444455555443
No 439
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=39.66 E-value=84 Score=26.85 Aligned_cols=42 Identities=14% Similarity=0.184 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHhcCCCE-EE-EcCCCCHHHH----HHHHHccCCcEEE
Q 028115 69 AAVNGNAELYSKVGVPF-VM-GTTGGDRVRL----HETIENSNVYAVI 110 (213)
Q Consensus 69 ~~~~~~~~~~~~~g~~~-Vi-GTTG~~~~~~----~~~~~~~~~~~v~ 110 (213)
+.+...++.+.+.|... .+ ||||.+.+.+ +.+++..++|+++
T Consensus 11 e~~~~ia~~v~~~gtDaI~VGGS~gvt~~~~~~~v~~ik~~~~lPvil 58 (205)
T TIGR01769 11 DEIEKIAKNAKDAGTDAIMVGGSLGIVESNLDQTVKKIKKITNLPVIL 58 (205)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCcCCCCHHHHHHHHHHHHhhcCCCEEE
Confidence 55566667777887763 33 6888886654 3444445688763
No 440
>TIGR00129 fdhD_narQ formate dehydrogenase family accessory protein FdhD. FdhD in E. coli and NarQ in B. subtilis are required for the activity of formate dehydrogenase. The gene name in B. subtilis reflects the requirement of the neighboring gene narA for nitrate assimilation, for which NarQ is not required. In some species, the gene is associated not with a known formate dehydrogenase but with a related putative molybdopterin-binding oxidoreductase. A reasonable hypothesis is that this protein helps prepare a required cofactor for assembly into the holoenzyme.
Probab=39.63 E-value=1.5e+02 Score=25.71 Aligned_cols=59 Identities=12% Similarity=0.001 Sum_probs=43.6
Q ss_pred EEEEcCChHHHHHHHHHHHhcCCCE---EEEcCCCCHHHHHHHHHccCCcEEEc--cChhHHHH
Q 028115 61 IVVDYTVPAAVNGNAELYSKVGVPF---VMGTTGGDRVRLHETIENSNVYAVIS--PQMGKQVV 119 (213)
Q Consensus 61 VvIDFS~p~~~~~~~~~~~~~g~~~---ViGTTG~~~~~~~~~~~~~~~~~v~a--~N~SlGv~ 119 (213)
+.=|-...+++...+=+|+.+|+++ ++-+||=-..++-.=+-.+++|+++| +-+|++|-
T Consensus 145 ~~EDIGRHNAlDK~iG~~ll~g~~~~~~~l~~SGRis~emv~Ka~~aGIpvlvS~sapT~lave 208 (237)
T TIGR00129 145 RMEDVGRHNAVDKLIGSALLNGANLRKGFILYSGRISSEMVQKAARCGVPIIASKSAPTDLAIE 208 (237)
T ss_pred EEeeCchHHHHHHHHHHHHHcCCCccCcEEEEeCCCcHHHHHHHHHcCCCEEEEcccchHHHHH
Confidence 3468899999999999999999874 77788854434322233578999985 66888773
No 441
>PRK07370 enoyl-(acyl carrier protein) reductase; Validated
Probab=39.56 E-value=2.2e+02 Score=24.04 Aligned_cols=32 Identities=9% Similarity=0.030 Sum_probs=26.2
Q ss_pred EEEEcCChHHHHHHHHHHHhc--CCCEEEEcCCC
Q 028115 61 IVVDYTVPAAVNGNAELYSKV--GVPFVMGTTGG 92 (213)
Q Consensus 61 VvIDFS~p~~~~~~~~~~~~~--g~~~ViGTTG~ 92 (213)
+..|++.++.+...++.+.+. ++.+++-..|+
T Consensus 64 ~~~Dl~d~~~v~~~~~~~~~~~g~iD~lv~nag~ 97 (258)
T PRK07370 64 LPCDVQDDAQIEETFETIKQKWGKLDILVHCLAF 97 (258)
T ss_pred eecCcCCHHHHHHHHHHHHHHcCCCCEEEEcccc
Confidence 568999999999999988764 57788877775
No 442
>PRK08642 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=39.47 E-value=1.7e+02 Score=24.02 Aligned_cols=72 Identities=15% Similarity=0.150 Sum_probs=42.4
Q ss_pred ChHHHHHHHHhCCCeEEEEecCCCccccccccccCceeEeecCCchhHHHhhhhcCCCCEEEEEcCChHHHHHHHHHHHh
Q 028115 1 MGKAVIKAADAAGLELVPVSFGTEEESGQKVEVCGKEIQVHGLSDRESVLASVFDKYPNMIVVDYTVPAAVNGNAELYSK 80 (213)
Q Consensus 1 MG~~i~~~~~~~~~elv~~~~~~~~~~g~~~~~~~~~v~i~~~~~~~~~l~~~~~~~~d~VvIDFS~p~~~~~~~~~~~~ 80 (213)
+|+.+++.+.+.|.+++....+... ..+.....+ ......+-.|++.++.+.+.++.+.+
T Consensus 17 IG~~la~~l~~~G~~vv~~~~~~~~-------------------~~~~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~ 76 (253)
T PRK08642 17 LGAAIARAFAREGARVVVNYHQSED-------------------AAEALADEL-GDRAIALQADVTDREQVQAMFATATE 76 (253)
T ss_pred HHHHHHHHHHHCCCeEEEEcCCCHH-------------------HHHHHHHHh-CCceEEEEcCCCCHHHHHHHHHHHHH
Confidence 5888888887888887743222210 111111111 01122245799999999888887654
Q ss_pred c---CCCEEEEcCCC
Q 028115 81 V---GVPFVMGTTGG 92 (213)
Q Consensus 81 ~---g~~~ViGTTG~ 92 (213)
. ++.+|+-..|.
T Consensus 77 ~~g~~id~li~~ag~ 91 (253)
T PRK08642 77 HFGKPITTVVNNALA 91 (253)
T ss_pred HhCCCCeEEEECCCc
Confidence 3 37788877664
No 443
>PRK09468 ompR osmolarity response regulator; Provisional
Probab=39.36 E-value=2.1e+02 Score=23.19 Aligned_cols=72 Identities=13% Similarity=0.136 Sum_probs=38.1
Q ss_pred CchhHHHhhhhcCCCCEEEEEcCChHH-HHHHHHHHHh--cCCCEEEEcCCCCHHHHHHHHHccCCcEEEccChhH
Q 028115 44 SDRESVLASVFDKYPNMIVVDYTVPAA-VNGNAELYSK--VGVPFVMGTTGGDRVRLHETIENSNVYAVISPQMGK 116 (213)
Q Consensus 44 ~~~~~~l~~~~~~~~d~VvIDFS~p~~-~~~~~~~~~~--~g~~~ViGTTG~~~~~~~~~~~~~~~~~v~a~N~Sl 116 (213)
.+.++++..+....+|.|++|...|.. -.+.++...+ ..+|+|+-|..-+.+...... ..+..-++...++.
T Consensus 36 ~~~~~~~~~~~~~~~dlvild~~l~~~~g~~~~~~lr~~~~~~pii~ls~~~~~~~~~~~l-~~Ga~~~l~kP~~~ 110 (239)
T PRK09468 36 ANAEQMDRLLTRESFHLMVLDLMLPGEDGLSICRRLRSQNNPTPIIMLTAKGEEVDRIVGL-EIGADDYLPKPFNP 110 (239)
T ss_pred CCHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCCEEEEECCCcHHHHHHHH-hcCCCeEEECCCCH
Confidence 344555444444568988999988763 2334444333 357888866544444332222 23433344444554
No 444
>PF03599 CdhD: CO dehydrogenase/acetyl-CoA synthase delta subunit; InterPro: IPR016041 This entry represents a conserved region predicted to form a TIM alpha/beta barrel, and is found in the delta subunit of a number of CO dehydrogenase/acetyl-CoA synthase enzymes.; PDB: 2H9A_B 2YCL_B 4DJF_E 4DJD_C 4DJE_C.
Probab=39.33 E-value=55 Score=30.85 Aligned_cols=44 Identities=14% Similarity=0.185 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHh-cCCCEEEEcCCCCHHHHHHHHHcc--CCcEEEccCh
Q 028115 69 AAVNGNAELYSK-VGVPFVMGTTGGDRVRLHETIENS--NVYAVISPQM 114 (213)
Q Consensus 69 ~~~~~~~~~~~~-~g~~~ViGTTG~~~~~~~~~~~~~--~~~~v~a~N~ 114 (213)
+...+.++..++ .++|+|++++ +.+-+++..+.. +.|+++++|-
T Consensus 84 e~fa~~vk~V~~a~~~PLIL~~~--D~evl~aale~~~~~kpLL~aAt~ 130 (386)
T PF03599_consen 84 EEFAKAVKKVAEAVDVPLILCGC--DPEVLKAALEACAGKKPLLYAATE 130 (386)
T ss_dssp HHHHHHHHHHHHC-SSEEEEESS--HHHHHHHHHHHTTTS--EEEEEBT
T ss_pred HHHHHHHHHHHHhcCCCEEEEeC--CHHHHHHHHHHhCcCCcEEeEcCH
Confidence 445555554443 5666666555 333344433322 2555555543
No 445
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=39.29 E-value=1.9e+02 Score=23.52 Aligned_cols=72 Identities=14% Similarity=0.059 Sum_probs=43.9
Q ss_pred ChHHHHHHHHhCCCeEEEEecCCCccccccccccCceeEeecCCchhHHHhhhhcCC--CCEEEEEcCChHHHHHHHHHH
Q 028115 1 MGKAVIKAADAAGLELVPVSFGTEEESGQKVEVCGKEIQVHGLSDRESVLASVFDKY--PNMIVVDYTVPAAVNGNAELY 78 (213)
Q Consensus 1 MG~~i~~~~~~~~~elv~~~~~~~~~~g~~~~~~~~~v~i~~~~~~~~~l~~~~~~~--~d~VvIDFS~p~~~~~~~~~~ 78 (213)
+|+.+++.+.+.|..++.. ++... ..++..+++.... ...+-+|++.++.+.+.++..
T Consensus 17 iG~~~a~~l~~~G~~vi~~-~r~~~-------------------~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 76 (253)
T PRK08217 17 LGRAMAEYLAQKGAKLALI-DLNQE-------------------KLEEAVAECGALGTEVRGYAANVTDEEDVEATFAQI 76 (253)
T ss_pred HHHHHHHHHHHCCCEEEEE-eCCHH-------------------HHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHH
Confidence 4788888887778776543 32211 1111111111111 223578999999998888877
Q ss_pred Hh--cCCCEEEEcCCC
Q 028115 79 SK--VGVPFVMGTTGG 92 (213)
Q Consensus 79 ~~--~g~~~ViGTTG~ 92 (213)
.+ .++..|+-..|.
T Consensus 77 ~~~~~~id~vi~~ag~ 92 (253)
T PRK08217 77 AEDFGQLNGLINNAGI 92 (253)
T ss_pred HHHcCCCCEEEECCCc
Confidence 65 357899988885
No 446
>PRK10643 DNA-binding transcriptional regulator BasR; Provisional
Probab=39.20 E-value=1.9e+02 Score=22.73 Aligned_cols=48 Identities=15% Similarity=0.140 Sum_probs=27.7
Q ss_pred chhHHHhhhhcCCCCEEEEEcCChHH-HHHHHHHHHh--cCCCEEEEcCCCC
Q 028115 45 DRESVLASVFDKYPNMIVVDYTVPAA-VNGNAELYSK--VGVPFVMGTTGGD 93 (213)
Q Consensus 45 ~~~~~l~~~~~~~~d~VvIDFS~p~~-~~~~~~~~~~--~g~~~ViGTTG~~ 93 (213)
+.++++..+....||.|++|...|.. -.+.++...+ ...|+|+-| +..
T Consensus 32 ~~~~~~~~~~~~~~d~illd~~~~~~~g~~~~~~l~~~~~~~pii~ls-~~~ 82 (222)
T PRK10643 32 TAREAEALLESGHYSLVVLDLGLPDEDGLHLLRRWRQKKYTLPVLILT-ARD 82 (222)
T ss_pred CHHHHHHHHHhCCCCEEEEECCCCCCCHHHHHHHHHhcCCCCcEEEEE-CCC
Confidence 44444444444568988999888753 2344444443 357877765 444
No 447
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=39.13 E-value=92 Score=26.91 Aligned_cols=30 Identities=23% Similarity=0.226 Sum_probs=18.9
Q ss_pred CCCEEEEEc-CChHHHHHHHHHHHhcCCCEEE
Q 028115 57 YPNMIVVDY-TVPAAVNGNAELYSKVGVPFVM 87 (213)
Q Consensus 57 ~~d~VvIDF-S~p~~~~~~~~~~~~~g~~~Vi 87 (213)
.+| +|||- -++++-....++|.++++|+|.
T Consensus 102 ~~D-~VvdaiD~~~~k~~L~~~c~~~~ip~I~ 132 (231)
T cd00755 102 DPD-FVVDAIDSIRAKVALIAYCRKRKIPVIS 132 (231)
T ss_pred CCC-EEEEcCCCHHHHHHHHHHHHHhCCCEEE
Confidence 466 66665 3455555666777777777764
No 448
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=39.12 E-value=48 Score=29.02 Aligned_cols=37 Identities=14% Similarity=0.079 Sum_probs=20.9
Q ss_pred EEcCChHH-HHHHHHHHHhcCCCEEEEcCCCCHHHHHH
Q 028115 63 VDYTVPAA-VNGNAELYSKVGVPFVMGTTGGDRVRLHE 99 (213)
Q Consensus 63 IDFS~p~~-~~~~~~~~~~~g~~~ViGTTG~~~~~~~~ 99 (213)
+=..+.+. =.+.++.+++.|+|+|+.|=+-+.+++++
T Consensus 93 ~KIaS~dl~n~~lL~~~A~tgkPvIlSTG~stl~EI~~ 130 (241)
T PF03102_consen 93 YKIASGDLTNLPLLEYIAKTGKPVILSTGMSTLEEIER 130 (241)
T ss_dssp EEE-GGGTT-HHHHHHHHTT-S-EEEE-TT--HHHHHH
T ss_pred EEeccccccCHHHHHHHHHhCCcEEEECCCCCHHHHHH
Confidence 33334433 35688999999999998776677776655
No 449
>cd06284 PBP1_LacI_like_6 Ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group includes the ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group belongs to the the LacI-GalR family repressors and are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding.
Probab=39.06 E-value=2.1e+02 Score=23.30 Aligned_cols=32 Identities=13% Similarity=-0.061 Sum_probs=17.4
Q ss_pred hhcCCCCEEEEEcCChHHHHHHHHHHHhcCCCEEE
Q 028115 53 VFDKYPNMIVVDYTVPAAVNGNAELYSKVGVPFVM 87 (213)
Q Consensus 53 ~~~~~~d~VvIDFS~p~~~~~~~~~~~~~g~~~Vi 87 (213)
+...++|.++|....+... ..+ +.+.++|+|.
T Consensus 51 ~~~~~vdgiii~~~~~~~~--~~~-~~~~~ipvv~ 82 (267)
T cd06284 51 LRRKQADGIILLDGSLPPT--ALT-ALAKLPPIVQ 82 (267)
T ss_pred HHHcCCCEEEEecCCCCHH--HHH-HHhcCCCEEE
Confidence 3345788555544433322 233 3466999885
No 450
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=39.03 E-value=1e+02 Score=26.26 Aligned_cols=105 Identities=16% Similarity=0.113 Sum_probs=58.5
Q ss_pred ChHHHHHHHHhCCCeEEEEecCCC---ccccccc-cc----c-CceeEeecC---CchhHHHhhhhcCCCCEEEEEcCCh
Q 028115 1 MGKAVIKAADAAGLELVPVSFGTE---EESGQKV-EV----C-GKEIQVHGL---SDRESVLASVFDKYPNMIVVDYTVP 68 (213)
Q Consensus 1 MG~~i~~~~~~~~~elv~~~~~~~---~~~g~~~-~~----~-~~~v~i~~~---~~~~~~l~~~~~~~~d~VvIDFS~p 68 (213)
.|+.+++.+.+.|..+|++.|... .. |-|+ .. . ..++..++. .+.++.+ ..++| |+|..+..
T Consensus 34 VG~~~a~~L~~~G~~vV~vsD~~g~i~~~-Gld~~~l~~~~~~~~~~~~~~~~~~~~~~~l~----~~~~D-VlipaA~~ 107 (217)
T cd05211 34 VGWGLAKKLAEEGGKVLAVSDPDGYIYDP-GITTEELINYAVALGGSARVKVQDYFPGEAIL----GLDVD-IFAPCALG 107 (217)
T ss_pred HHHHHHHHHHHcCCEEEEEEcCCCcEECC-CCCHHHHHHHHHhhCCccccCcccccCcccce----ecccc-EEeecccc
Confidence 388899999888999999988543 11 3322 10 0 001111110 0112222 23678 89988877
Q ss_pred HHHHHHHHHHHhcCCCEEEEcCC--CCHHHHHHHHHccCCcEEEccChhH
Q 028115 69 AAVNGNAELYSKVGVPFVMGTTG--GDRVRLHETIENSNVYAVISPQMGK 116 (213)
Q Consensus 69 ~~~~~~~~~~~~~g~~~ViGTTG--~~~~~~~~~~~~~~~~~v~a~N~Sl 116 (213)
..+ +-+-+.+.+.++|++-.- ++.+.-+.|.+ .++++.|-+-.
T Consensus 108 ~~i--~~~~a~~l~a~~V~e~AN~p~t~~a~~~L~~---~Gi~v~Pd~~~ 152 (217)
T cd05211 108 NVI--DLENAKKLKAKVVAEGANNPTTDEALRILHE---RGIVVAPDIVA 152 (217)
T ss_pred Ccc--ChhhHhhcCccEEEeCCCCCCCHHHHHHHHH---CCcEEEChHHh
Confidence 644 334455778999995444 23443344433 35777777654
No 451
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=38.99 E-value=2.2e+02 Score=25.07 Aligned_cols=23 Identities=22% Similarity=0.115 Sum_probs=17.6
Q ss_pred ChHHHHHHHHhCCCeEEEEecCCC
Q 028115 1 MGKAVIKAADAAGLELVPVSFGTE 24 (213)
Q Consensus 1 MG~~i~~~~~~~~~elv~~~~~~~ 24 (213)
||..+++.+.+.|+++. ++++.+
T Consensus 12 mG~~mA~~l~~~G~~V~-v~d~~~ 34 (296)
T PRK15461 12 MGSPMASNLLKQGHQLQ-VFDVNP 34 (296)
T ss_pred HHHHHHHHHHHCCCeEE-EEcCCH
Confidence 89999999888888875 355544
No 452
>PRK06180 short chain dehydrogenase; Provisional
Probab=38.97 E-value=1.9e+02 Score=24.49 Aligned_cols=71 Identities=20% Similarity=0.222 Sum_probs=44.5
Q ss_pred ChHHHHHHHHhCCCeEEEEecCCCccccccccccCceeEeecCCchhHHHhhhhcCCCCEEEEEcCChHHHHHHHHHHHh
Q 028115 1 MGKAVIKAADAAGLELVPVSFGTEEESGQKVEVCGKEIQVHGLSDRESVLASVFDKYPNMIVVDYTVPAAVNGNAELYSK 80 (213)
Q Consensus 1 MG~~i~~~~~~~~~elv~~~~~~~~~~g~~~~~~~~~v~i~~~~~~~~~l~~~~~~~~d~VvIDFS~p~~~~~~~~~~~~ 80 (213)
+|+.+++.+.+.|++++.. ++.+. +++. +.+........+..|++.++.+...++.+.+
T Consensus 16 iG~~la~~l~~~G~~V~~~-~r~~~-------------------~~~~-l~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~ 74 (277)
T PRK06180 16 FGRALAQAALAAGHRVVGT-VRSEA-------------------ARAD-FEALHPDRALARLLDVTDFDAIDAVVADAEA 74 (277)
T ss_pred HHHHHHHHHHhCcCEEEEE-eCCHH-------------------HHHH-HHhhcCCCeeEEEccCCCHHHHHHHHHHHHH
Confidence 4889999888889987753 33221 1111 1110001122256799999999998887766
Q ss_pred c--CCCEEEEcCCC
Q 028115 81 V--GVPFVMGTTGG 92 (213)
Q Consensus 81 ~--g~~~ViGTTG~ 92 (213)
. ++..|+-..|.
T Consensus 75 ~~~~~d~vv~~ag~ 88 (277)
T PRK06180 75 TFGPIDVLVNNAGY 88 (277)
T ss_pred HhCCCCEEEECCCc
Confidence 4 57788877775
No 453
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=38.89 E-value=1e+02 Score=28.33 Aligned_cols=51 Identities=18% Similarity=0.171 Sum_probs=34.1
Q ss_pred CCEEEEEcCCh--HHHHHHHHHHHhc--CCCEEEEcCCCCHHHHHHHHHccCCcEEE
Q 028115 58 PNMIVVDYTVP--AAVNGNAELYSKV--GVPFVMGTTGGDRVRLHETIENSNVYAVI 110 (213)
Q Consensus 58 ~d~VvIDFS~p--~~~~~~~~~~~~~--g~~~ViGTTG~~~~~~~~~~~~~~~~~v~ 110 (213)
+|.++||-|++ +.+.+.++...+. ++|++.|+.+ +.++...+.+ +++-++.
T Consensus 112 ~d~i~iD~a~gh~~~~~e~I~~ir~~~p~~~vi~g~V~-t~e~a~~l~~-aGad~i~ 166 (326)
T PRK05458 112 PEYITIDIAHGHSDSVINMIQHIKKHLPETFVIAGNVG-TPEAVRELEN-AGADATK 166 (326)
T ss_pred CCEEEEECCCCchHHHHHHHHHHHhhCCCCeEEEEecC-CHHHHHHHHH-cCcCEEE
Confidence 48788999998 5566767766653 3788888777 6666555554 3444443
No 454
>TIGR03023 WcaJ_sugtrans Undecaprenyl-phosphate glucose phosphotransferase. Colanic acid biosynthesis utilizes a glucose-undecaprenyl carrier, knockout of EpsB abolishes incorporation of UDP-glucose into the lipid phase and the C-terminal portion of GumD has been shown to be responsible for the glucosyl-1-transferase activity.
Probab=38.82 E-value=1.9e+02 Score=27.02 Aligned_cols=79 Identities=10% Similarity=0.127 Sum_probs=47.0
Q ss_pred hHHHHHHHH-h--CCCeEEEEecCCCccccccccccCceeEeecC-CchhHHHhhhhcCCCCEEEE--EcCChHHHHHHH
Q 028115 2 GKAVIKAAD-A--AGLELVPVSFGTEEESGQKVEVCGKEIQVHGL-SDRESVLASVFDKYPNMIVV--DYTVPAAVNGNA 75 (213)
Q Consensus 2 G~~i~~~~~-~--~~~elv~~~~~~~~~~g~~~~~~~~~v~i~~~-~~~~~~l~~~~~~~~d~VvI--DFS~p~~~~~~~ 75 (213)
|+.+++.+. + .+++++|.++..+...+.. .++++.+. +++.+.+. +...|.|+| ....++...+.+
T Consensus 140 ~~~l~~~L~~~~~~g~~vvG~idd~~~~~~~~-----~gvpVlg~~~dl~~~i~---~~~vd~ViIA~p~~~~~~~~~ll 211 (451)
T TIGR03023 140 GRRLAERLARNPELGYRVVGFFDDRPDARTGV-----RGVPVLGKLDDLEELIR---EGEVDEVYIALPLAAEDRILELL 211 (451)
T ss_pred HHHHHHHHHhCccCCcEEEEEEeCCCcccccc-----CCCCccCCHHHHHHHHH---hcCCCEEEEeeCcccHHHHHHHH
Confidence 456677765 3 3689999888544222211 13444321 23444443 346673344 445566788999
Q ss_pred HHHHhcCCCEEEE
Q 028115 76 ELYSKVGVPFVMG 88 (213)
Q Consensus 76 ~~~~~~g~~~ViG 88 (213)
+.|.+.|+++.+-
T Consensus 212 ~~~~~~gv~V~vv 224 (451)
T TIGR03023 212 DALEDLTVDVRLV 224 (451)
T ss_pred HHHHhcCCEEEEe
Confidence 9999999987664
No 455
>COG0460 ThrA Homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=38.81 E-value=1.6e+02 Score=27.15 Aligned_cols=65 Identities=14% Similarity=0.042 Sum_probs=42.6
Q ss_pred CCCCEEEEEcCCh-----HHHHHHHHHHHhcCCCEEEEcCCCC---HHHHHHHHHccCCcEEEccChhHHHHHHH
Q 028115 56 KYPNMIVVDYTVP-----AAVNGNAELYSKVGVPFVMGTTGGD---RVRLHETIENSNVYAVISPQMGKQVVAFL 122 (213)
Q Consensus 56 ~~~d~VvIDFS~p-----~~~~~~~~~~~~~g~~~ViGTTG~~---~~~~~~~~~~~~~~~v~a~N~SlGv~ll~ 122 (213)
...| |+|+-+-. +. .+.++.++++|+++|..==+.- ..++.+++++++..+.|=++-.=|+-++.
T Consensus 77 ~~~d-vvve~~~~d~~~~~~-~~~~~~al~~GkhVVTaNK~~lA~~~~el~~~A~~~g~~l~yEAtV~gGiPiI~ 149 (333)
T COG0460 77 EDID-VVVELVGGDVEPAEP-ADLYLKALENGKHVVTANKALLALHYHELREAAEKNGVKLLYEATVGGGIPIIK 149 (333)
T ss_pred ccCC-EEEecCcccCCchhh-HHHHHHHHHcCCeEECCCchHhHhhHHHHHHHHHHhCCeEEEEeeeccCcchHH
Confidence 3556 67765544 44 5999999999999997555543 23677777766666666555555554443
No 456
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=38.77 E-value=1.2e+02 Score=26.96 Aligned_cols=34 Identities=18% Similarity=0.104 Sum_probs=22.1
Q ss_pred CCCEEEEEcCC-hHHHHHHHHHHHhc-CCCEEEEcCC
Q 028115 57 YPNMIVVDYTV-PAAVNGNAELYSKV-GVPFVMGTTG 91 (213)
Q Consensus 57 ~~d~VvIDFS~-p~~~~~~~~~~~~~-g~~~ViGTTG 91 (213)
.+| ++||++- +..+...++..... |.-+.+|.++
T Consensus 257 ~~d-~vid~~G~~~~~~~~~~~~~~~~g~~v~~g~~~ 292 (369)
T cd08301 257 GVD-YSFECTGNIDAMISAFECVHDGWGVTVLLGVPH 292 (369)
T ss_pred CCC-EEEECCCChHHHHHHHHHhhcCCCEEEEECcCC
Confidence 467 8899884 55566666655553 5666677664
No 457
>cd00740 MeTr MeTr subgroup of pterin binding enzymes. This family includes cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=38.60 E-value=1e+02 Score=26.90 Aligned_cols=50 Identities=12% Similarity=0.098 Sum_probs=37.4
Q ss_pred EEEEcCChHHHHHHHHHHHhcCCCEEEEcCCCC----HHHHHHHHHccCCcEEEcc
Q 028115 61 IVVDYTVPAAVNGNAELYSKVGVPFVMGTTGGD----RVRLHETIENSNVYAVISP 112 (213)
Q Consensus 61 VvIDFS~p~~~~~~~~~~~~~g~~~ViGTTG~~----~~~~~~~~~~~~~~~v~a~ 112 (213)
+.||-+.|+.+..-++.| .|.++|=-.+|.. .+++-.+....+.|+|+-+
T Consensus 73 iSIDT~~~~v~e~aL~~~--~G~~iINsIs~~~~~e~~~~~~~~~~~~~~~vV~m~ 126 (252)
T cd00740 73 LMLDSTNWEVIEAGLKCC--QGKCVVNSINLEDGEERFLKVARLAKEHGAAVVVLA 126 (252)
T ss_pred EEeeCCcHHHHHHHHhhC--CCCcEEEeCCCCCCccccHHHHHHHHHhCCCEEEec
Confidence 899999999888877776 3999999999986 2344445556677776544
No 458
>PF01116 F_bP_aldolase: Fructose-bisphosphate aldolase class-II; InterPro: IPR000771 Fructose-bisphosphate aldolase [, ] is a glycolytic enzyme that catalyses the reversible aldol cleavage or condensation of fructose-1,6-bisphosphate into dihydroxyacetone-phosphate and glyceraldehyde 3-phosphate. There are two classes of fructose-bisphosphate aldolases with different catalytic mechanisms. Class-II aldolases [], mainly found in prokaryotes and fungi, are homodimeric enzymes, which require a divalent metal ion, generally zinc, for their activity. This family also includes the Escherichia coli galactitol operon protein, gatY, which catalyses the transformation of tagatose 1,6-bisphosphate into glycerone phosphate and D-glyceraldehyde 3-phosphate; and E. coli N-acetyl galactosamine operon protein, agaY, which catalyses the same reaction. There are two histidine residues in the first half of the sequence of these enzymes that have been shown to be involved in binding a zinc ion [].; GO: 0008270 zinc ion binding, 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3Q94_A 1RVG_B 1RV8_C 3C4U_A 3C56_B 3C52_A 2FJK_A 3N9R_P 3N9S_A 1GVF_B ....
Probab=38.57 E-value=70 Score=28.66 Aligned_cols=53 Identities=8% Similarity=0.098 Sum_probs=35.3
Q ss_pred CCEEEEEcCChHHHHHHHHHHHhcCCCEEEEcCCCCH---------HHHHHHHHccCCcEEE
Q 028115 58 PNMIVVDYTVPAAVNGNAELYSKVGVPFVMGTTGGDR---------VRLHETIENSNVYAVI 110 (213)
Q Consensus 58 ~d~VvIDFS~p~~~~~~~~~~~~~g~~~ViGTTG~~~---------~~~~~~~~~~~~~~v~ 110 (213)
.-+-.+.+.+-+.+...++.|.+.+.|+|+.++-... ...+.+++.+++|+.+
T Consensus 17 yAV~AfN~~n~e~~~avi~AAe~~~sPvIlq~~~~~~~~~~~~~~~~~~~~~a~~~~vPVal 78 (287)
T PF01116_consen 17 YAVPAFNVYNLETARAVIEAAEELNSPVILQISPSEVKYMGLEYLAAMVKAAAEEASVPVAL 78 (287)
T ss_dssp -BEEEEE-SSHHHHHHHHHHHHHTTS-EEEEEEHHHHHHHHHHHHHHHHHHHHHHSTSEEEE
T ss_pred CeEEEEeeCCHHHHHHHHHHHHHhCCCEEEEcchhhhhhhhHHHHHHHHHHHHHHcCCCEEe
Confidence 3335677778888888888888888888888775432 1235566667788765
No 459
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=38.40 E-value=1.9e+02 Score=22.63 Aligned_cols=69 Identities=17% Similarity=0.128 Sum_probs=41.6
Q ss_pred hHHHhhhhcCCCCEEEE---EcCChHHHHHHHHHHHhcCC---CEEEEcCC-CCHHHHHHHHHccCCcEEEccChhHHH
Q 028115 47 ESVLASVFDKYPNMIVV---DYTVPAAVNGNAELYSKVGV---PFVMGTTG-GDRVRLHETIENSNVYAVISPQMGKQV 118 (213)
Q Consensus 47 ~~~l~~~~~~~~d~VvI---DFS~p~~~~~~~~~~~~~g~---~~ViGTTG-~~~~~~~~~~~~~~~~~v~a~N~SlGv 118 (213)
++.++...+.++|.|.| +-++.+.+.+.++.+.+.+. ++++| | ...++.+++.+ .++--++.|...+.-
T Consensus 43 e~~v~aa~e~~adii~iSsl~~~~~~~~~~~~~~L~~~g~~~i~vivG--G~~~~~~~~~l~~-~Gvd~~~~~gt~~~~ 118 (132)
T TIGR00640 43 EEIARQAVEADVHVVGVSSLAGGHLTLVPALRKELDKLGRPDILVVVG--GVIPPQDFDELKE-MGVAEIFGPGTPIPE 118 (132)
T ss_pred HHHHHHHHHcCCCEEEEcCchhhhHHHHHHHHHHHHhcCCCCCEEEEe--CCCChHhHHHHHH-CCCCEEECCCCCHHH
Confidence 34444444568884333 44567778888888878753 45553 3 33445555543 567778887776654
No 460
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=38.34 E-value=1.9e+02 Score=23.55 Aligned_cols=72 Identities=19% Similarity=0.251 Sum_probs=43.7
Q ss_pred ChHHHHHHHHhCCCeEEEEecCCCccccccccccCceeEeecCCchhHHHhhhhc-CCCCEEEEEcCChHHHHHHHHHHH
Q 028115 1 MGKAVIKAADAAGLELVPVSFGTEEESGQKVEVCGKEIQVHGLSDRESVLASVFD-KYPNMIVVDYTVPAAVNGNAELYS 79 (213)
Q Consensus 1 MG~~i~~~~~~~~~elv~~~~~~~~~~g~~~~~~~~~v~i~~~~~~~~~l~~~~~-~~~d~VvIDFS~p~~~~~~~~~~~ 79 (213)
+|+.+++.+.+.|.+++. +++.+. ..+.....+.. .....+..|++.++.+...++.+.
T Consensus 17 iG~~l~~~l~~~G~~V~~-~~r~~~-------------------~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~ 76 (251)
T PRK07231 17 IGEGIARRFAAEGARVVV-TDRNEE-------------------AAERVAAEILAGGRAIAVAADVSDEADVEAAVAAAL 76 (251)
T ss_pred HHHHHHHHHHHCCCEEEE-EeCCHH-------------------HHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHH
Confidence 488889888888888654 343321 11111222110 112235679999999999888774
Q ss_pred hc--CCCEEEEcCCC
Q 028115 80 KV--GVPFVMGTTGG 92 (213)
Q Consensus 80 ~~--g~~~ViGTTG~ 92 (213)
+. ++..||-+.|.
T Consensus 77 ~~~~~~d~vi~~ag~ 91 (251)
T PRK07231 77 ERFGSVDILVNNAGT 91 (251)
T ss_pred HHhCCCCEEEECCCC
Confidence 42 46788887775
No 461
>TIGR00381 cdhD CO dehydrogenase/acetyl-CoA synthase, delta subunit. This is the small subunit of a heterodimer which catalyzes the reaction CO + H2O + Acceptor = CO2 + Reduced acceptor and is involved in the synthesis of acetyl-CoA from CO2 and H2.
Probab=38.05 E-value=2e+02 Score=27.21 Aligned_cols=101 Identities=19% Similarity=0.226 Sum_probs=58.6
Q ss_pred CCCCEEEEEc-CC-hH-------HHHHHHHHH-HhcCCCEEEEcCCC---CHHHHHHHHHc-cC-CcEEEccChhHHHHH
Q 028115 56 KYPNMIVVDY-TV-PA-------AVNGNAELY-SKVGVPFVMGTTGG---DRVRLHETIEN-SN-VYAVISPQMGKQVVA 120 (213)
Q Consensus 56 ~~~d~VvIDF-S~-p~-------~~~~~~~~~-~~~g~~~ViGTTG~---~~~~~~~~~~~-~~-~~~v~a~N~SlGv~l 120 (213)
..+|.|.|-. |. |+ .....++.. ...++|+|++.||= +.+-+++..+. .+ .|+|+|.|.-. |
T Consensus 152 ~~aD~Ialr~~S~DP~~~d~~~~e~a~~vk~V~~av~vPLIL~gsg~~~kD~eVLeaaLe~~~G~kpLL~SAt~e~--N- 228 (389)
T TIGR00381 152 FGADMVTIHLISTDPKLDDKSPSEAAKVLEDVLQAVDVPIVIGGSGNPEKDPLVLEKAAEVAEGERCLLASANLDL--D- 228 (389)
T ss_pred hCCCEEEEEecCCCccccccCHHHHHHHHHHHHHhCCCCEEEeCCCCCcCCHHHHHHHHHHhCCCCcEEEecCchh--h-
Confidence 4678545544 33 66 666666666 55899999999974 44555554443 44 79999999775 2
Q ss_pred HHHHHHHHHHhcCCCCCCCcEEEEeccCCCCCCchHHHHHHHHHHHhcCCC
Q 028115 121 FLAAMEIMAEQFPGAFSGYSLQVLESHQAGKLDTSGTAKAVISCFQKLGVS 171 (213)
Q Consensus 121 l~~l~~~aa~~l~~~~~~~dieI~E~HH~~K~DaSGTA~~la~~~~~~~~~ 171 (213)
+.++++.+ +. |..-++=..- |--|-|+.|...+.++|+.
T Consensus 229 y~~ia~lA-k~-------yg~~Vvv~s~----~Din~ak~Ln~kL~~~Gv~ 267 (389)
T TIGR00381 229 YEKIANAA-KK-------YGHVVLSWTI----MDINMQKTLNRYLLKRGLM 267 (389)
T ss_pred HHHHHHHH-HH-------hCCeEEEEcC----CcHHHHHHHHHHHHHcCCC
Confidence 23344333 22 2333322211 1235677777766666654
No 462
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=37.97 E-value=49 Score=28.64 Aligned_cols=33 Identities=21% Similarity=0.191 Sum_probs=22.7
Q ss_pred CCCEEEEEcCChHHHH-HHHHHHHhcCCCEEEEcC
Q 028115 57 YPNMIVVDYTVPAAVN-GNAELYSKVGVPFVMGTT 90 (213)
Q Consensus 57 ~~d~VvIDFS~p~~~~-~~~~~~~~~g~~~ViGTT 90 (213)
.+| +|||-+..-.+. ..-++|.++++|+|.|.+
T Consensus 122 ~~D-iVi~~~D~~~~r~~ln~~~~~~~ip~v~~~~ 155 (245)
T PRK05690 122 GHD-LVLDCTDNVATRNQLNRACFAAKKPLVSGAA 155 (245)
T ss_pred cCC-EEEecCCCHHHHHHHHHHHHHhCCEEEEeee
Confidence 577 778777544443 355778888888888654
No 463
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=37.96 E-value=2e+02 Score=26.40 Aligned_cols=49 Identities=24% Similarity=0.316 Sum_probs=29.7
Q ss_pred CchhHHHhhhhcCCCCEEEEEcCChH------HHHHHHHHHHh--cCCCEEEEcCCCC
Q 028115 44 SDRESVLASVFDKYPNMIVVDYTVPA------AVNGNAELYSK--VGVPFVMGTTGGD 93 (213)
Q Consensus 44 ~~~~~~l~~~~~~~~d~VvIDFS~p~------~~~~~~~~~~~--~g~~~ViGTTG~~ 93 (213)
.+.+++++.+....+|.|++|+..|. .-.+.++...+ ..+|+|+-| +..
T Consensus 27 ~~~~~al~~l~~~~~dlvllD~~mp~~~~~~~~g~~~l~~i~~~~~~~piI~lt-~~~ 83 (445)
T TIGR02915 27 ADRESAIALVRRHEPAVVTLDLGLPPDADGASEGLAALQQILAIAPDTKVIVIT-GND 83 (445)
T ss_pred CCHHHHHHHHhhCCCCEEEEeCCCCCCcCCCCCHHHHHHHHHhhCCCCCEEEEe-cCC
Confidence 45556666555567898899999884 23344444333 346776654 544
No 464
>TIGR02685 pter_reduc_Leis pteridine reductase. Pteridine reductase is an enzyme used by trypanosomatids (including Trypanosoma cruzi and Leishmania major) to obtain reduced pteridines by salvage rather than biosynthetic pathways. Enzymes in T. cruzi described as pteridine reductase 1 (PTR1) and pteridine reductase 2 (PTR2) have different activity profiles. PTR1 is more active with with fully oxidized biopterin and folate than with reduced forms, while PTR2 reduces dihydrobiopterin and dihydrofolate but not oxidized pteridines. T. cruzi PTR1 and PTR2 are more similar to each other in sequence than either is to the pteridine reductase of Leishmania major, and all are included in this family.
Probab=37.95 E-value=1.8e+02 Score=24.51 Aligned_cols=73 Identities=11% Similarity=0.188 Sum_probs=41.2
Q ss_pred ChHHHHHHHHhCCCeEEEEecCCCccccccccccCceeEeecCCchhHHHhhhhcCCC-C--EEEEEcCChHHH----HH
Q 028115 1 MGKAVIKAADAAGLELVPVSFGTEEESGQKVEVCGKEIQVHGLSDRESVLASVFDKYP-N--MIVVDYTVPAAV----NG 73 (213)
Q Consensus 1 MG~~i~~~~~~~~~elv~~~~~~~~~~g~~~~~~~~~v~i~~~~~~~~~l~~~~~~~~-d--~VvIDFS~p~~~----~~ 73 (213)
.|+.+++.+.++|.+++....+.. ++++...+++..... . .+..|.+.++.+ .+
T Consensus 13 IG~~~a~~l~~~G~~V~~~~~~~~-------------------~~~~~~~~~l~~~~~~~~~~~~~Dv~d~~~~~~~~~~ 73 (267)
T TIGR02685 13 IGSSIAVALHQEGYRVVLHYHRSA-------------------AAASTLAAELNARRPNSAVTCQADLSNSATLFSRCEA 73 (267)
T ss_pred HHHHHHHHHHhCCCeEEEEcCCcH-------------------HHHHHHHHHHHhccCCceEEEEccCCCchhhHHHHHH
Confidence 488999998888988875432221 112222222211111 1 245699999855 44
Q ss_pred HHHHHHhc--CCCEEEEcCCC
Q 028115 74 NAELYSKV--GVPFVMGTTGG 92 (213)
Q Consensus 74 ~~~~~~~~--g~~~ViGTTG~ 92 (213)
.++.+.+. ++.+||-..|.
T Consensus 74 ~~~~~~~~~g~iD~lv~nAG~ 94 (267)
T TIGR02685 74 IIDACFRAFGRCDVLVNNASA 94 (267)
T ss_pred HHHHHHHccCCceEEEECCcc
Confidence 44444332 57899988885
No 465
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=37.85 E-value=1.2e+02 Score=26.57 Aligned_cols=46 Identities=13% Similarity=0.057 Sum_probs=26.6
Q ss_pred HHHHHHHHHHhcCCCEEEEcCCCCHHHHHHH---HHccC-CcE-EEccChhH
Q 028115 70 AVNGNAELYSKVGVPFVMGTTGGDRVRLHET---IENSN-VYA-VISPQMGK 116 (213)
Q Consensus 70 ~~~~~~~~~~~~g~~~ViGTTG~~~~~~~~~---~~~~~-~~~-v~a~N~Sl 116 (213)
...+.++.|.+.|+.=|+= ..+..++.+.+ +++.+ -++ +++||.+-
T Consensus 105 G~e~f~~~~~~aGvdGvii-pDLp~ee~~~~~~~~~~~gl~~I~lvap~t~~ 155 (258)
T PRK13111 105 GVERFAADAAEAGVDGLII-PDLPPEEAEELRAAAKKHGLDLIFLVAPTTTD 155 (258)
T ss_pred CHHHHHHHHHHcCCcEEEE-CCCCHHHHHHHHHHHHHcCCcEEEEeCCCCCH
Confidence 4556778888888764443 56665554443 33445 334 36777764
No 466
>TIGR01457 HAD-SF-IIA-hyp2 HAD-superfamily subfamily IIA hydrolase, TIGR01457. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram positive (low-GC) bacteria. Sequences found in this model are annotated variously as related to NagD or 4-nitrophenyl phosphatase, and this hypothetical equivalog, of all of those within the Class IIA subfamily, is most closely related to the E. coli NagD enzyme and the PGP_euk equivalog (TIGR01452). However, there is presently no evidence that this hypothetical equivalog has the same function of either those.
Probab=37.75 E-value=93 Score=26.68 Aligned_cols=51 Identities=12% Similarity=0.161 Sum_probs=35.8
Q ss_pred HHHHHHHHHHhcCCCEEEEc--CCCCHHHHHHHHHccCC--cE--EEccChhHHHHH
Q 028115 70 AVNGNAELYSKVGVPFVMGT--TGGDRVRLHETIENSNV--YA--VISPQMGKQVVA 120 (213)
Q Consensus 70 ~~~~~~~~~~~~g~~~ViGT--TG~~~~~~~~~~~~~~~--~~--v~a~N~SlGv~l 120 (213)
.+.+.++.+.++|+++++-| ||.+.+++.+.-+..++ +. +++||.++.-.+
T Consensus 21 ~a~~~l~~l~~~g~~~~~~Tnn~~r~~~~~~~~l~~~g~~~~~~~iit~~~~~~~~l 77 (249)
T TIGR01457 21 EAETFVHELQKRDIPYLFVTNNSTRTPESVAEMLASFDIPATLETVFTASMATADYM 77 (249)
T ss_pred CHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHcCCCCChhhEeeHHHHHHHHH
Confidence 36788888999999999988 67887766554444443 32 778887765544
No 467
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=37.71 E-value=2.3e+02 Score=23.76 Aligned_cols=72 Identities=22% Similarity=0.098 Sum_probs=44.7
Q ss_pred ChHHHHHHHHhCCCeEEEEecCCCccccccccccCceeEeecCCchhHHHhhhhcCCCC--EEEEEcCChHHHHHHHHHH
Q 028115 1 MGKAVIKAADAAGLELVPVSFGTEEESGQKVEVCGKEIQVHGLSDRESVLASVFDKYPN--MIVVDYTVPAAVNGNAELY 78 (213)
Q Consensus 1 MG~~i~~~~~~~~~elv~~~~~~~~~~g~~~~~~~~~v~i~~~~~~~~~l~~~~~~~~d--~VvIDFS~p~~~~~~~~~~ 78 (213)
+|+.+++.+.+.|.+++.. ++.+. .+++..+.+.....+ .+..|.+.++.+...+..+
T Consensus 22 iG~~ia~~l~~~G~~vv~~-~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~ 81 (265)
T PRK07097 22 IGFAIAKAYAKAGATIVFN-DINQE-------------------LVDKGLAAYRELGIEAHGYVCDVTDEDGVQAMVSQI 81 (265)
T ss_pred HHHHHHHHHHHCCCeEEEE-eCCHH-------------------HHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHH
Confidence 4788888888888887643 32211 112222222111122 3568999999999988877
Q ss_pred Hhc--CCCEEEEcCCC
Q 028115 79 SKV--GVPFVMGTTGG 92 (213)
Q Consensus 79 ~~~--g~~~ViGTTG~ 92 (213)
.+. ++..||-..|.
T Consensus 82 ~~~~~~id~li~~ag~ 97 (265)
T PRK07097 82 EKEVGVIDILVNNAGI 97 (265)
T ss_pred HHhCCCCCEEEECCCC
Confidence 653 47888888875
No 468
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=37.70 E-value=2.3e+02 Score=23.62 Aligned_cols=72 Identities=14% Similarity=0.234 Sum_probs=44.4
Q ss_pred ChHHHHHHHHhCCCeEEEEecCCCccccccccccCceeEeecCCchhHHHhhhhcCCCCEEEEEcCChHHHHHHHHHHHh
Q 028115 1 MGKAVIKAADAAGLELVPVSFGTEEESGQKVEVCGKEIQVHGLSDRESVLASVFDKYPNMIVVDYTVPAAVNGNAELYSK 80 (213)
Q Consensus 1 MG~~i~~~~~~~~~elv~~~~~~~~~~g~~~~~~~~~v~i~~~~~~~~~l~~~~~~~~d~VvIDFS~p~~~~~~~~~~~~ 80 (213)
+|+.+++.+.+.|.+++.. .+... ....+.+++. ..++..+-.|++.++.+...++.+.+
T Consensus 20 IG~aia~~l~~~G~~vv~~-~~~~~------------------~~~~~~~~~~-~~~~~~~~~Dl~~~~~~~~~~~~~~~ 79 (251)
T PRK12481 20 LGQGMAIGLAKAGADIVGV-GVAEA------------------PETQAQVEAL-GRKFHFITADLIQQKDIDSIVSQAVE 79 (251)
T ss_pred HHHHHHHHHHHCCCEEEEe-cCchH------------------HHHHHHHHHc-CCeEEEEEeCCCCHHHHHHHHHHHHH
Confidence 4888998888889888753 22110 0111111111 01122356899999999999988765
Q ss_pred c--CCCEEEEcCCC
Q 028115 81 V--GVPFVMGTTGG 92 (213)
Q Consensus 81 ~--g~~~ViGTTG~ 92 (213)
. ++.+++-..|.
T Consensus 80 ~~g~iD~lv~~ag~ 93 (251)
T PRK12481 80 VMGHIDILINNAGI 93 (251)
T ss_pred HcCCCCEEEECCCc
Confidence 3 47788877775
No 469
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=37.68 E-value=2.2e+02 Score=23.45 Aligned_cols=72 Identities=17% Similarity=0.170 Sum_probs=43.2
Q ss_pred ChHHHHHHHHhCCCeEEEEecCCCccccccccccCceeEeecCCchhHHHhhhhcCCCC--EEEEEcCChHHHHHHHHHH
Q 028115 1 MGKAVIKAADAAGLELVPVSFGTEEESGQKVEVCGKEIQVHGLSDRESVLASVFDKYPN--MIVVDYTVPAAVNGNAELY 78 (213)
Q Consensus 1 MG~~i~~~~~~~~~elv~~~~~~~~~~g~~~~~~~~~v~i~~~~~~~~~l~~~~~~~~d--~VvIDFS~p~~~~~~~~~~ 78 (213)
+|+.+++.+.+.|.+++.. .+.+. ..++...++.....+ .+..|++.++.+.+.++..
T Consensus 19 iG~~la~~l~~~G~~v~~~-~r~~~-------------------~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~ 78 (262)
T PRK13394 19 IGKEIALELARAGAAVAIA-DLNQD-------------------GANAVADEINKAGGKAIGVAMDVTNEDAVNAGIDKV 78 (262)
T ss_pred HHHHHHHHHHHCCCeEEEE-eCChH-------------------HHHHHHHHHHhcCceEEEEECCCCCHHHHHHHHHHH
Confidence 4888888888888887743 33221 111112222111222 2457999999988877765
Q ss_pred Hh--cCCCEEEEcCCC
Q 028115 79 SK--VGVPFVMGTTGG 92 (213)
Q Consensus 79 ~~--~g~~~ViGTTG~ 92 (213)
.+ .++.+||-..|.
T Consensus 79 ~~~~~~~d~vi~~ag~ 94 (262)
T PRK13394 79 AERFGSVDILVSNAGI 94 (262)
T ss_pred HHHcCCCCEEEECCcc
Confidence 43 347788888875
No 470
>PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional
Probab=37.46 E-value=2.4e+02 Score=23.47 Aligned_cols=32 Identities=13% Similarity=0.101 Sum_probs=25.1
Q ss_pred EEEEcCChHHHHHHHHHHHhc--CCCEEEEcCCC
Q 028115 61 IVVDYTVPAAVNGNAELYSKV--GVPFVMGTTGG 92 (213)
Q Consensus 61 VvIDFS~p~~~~~~~~~~~~~--g~~~ViGTTG~ 92 (213)
+..|++.++.+.+.++.+.+. ++..|+-+.|.
T Consensus 54 ~~~D~~~~~~~~~~~~~~~~~~g~id~li~~Ag~ 87 (266)
T PRK06171 54 VPTDVSSAEEVNHTVAEIIEKFGRIDGLVNNAGI 87 (266)
T ss_pred EEccCCCHHHHHHHHHHHHHHcCCCCEEEECCcc
Confidence 567999999999988887664 57788877774
No 471
>TIGR03022 WbaP_sugtrans Undecaprenyl-phosphate galactose phosphotransferase, WbaP. This model includes the enterobacterial enzymes, where the function is presumed to be identical to the S. typhimurium enzyme as well as a somewhat broader group which are likely to catalyze the same or highly similar reactions based on a phylogenetic tree-building analysis of the broader sugar transferase family. Most of these genes are found within large operons dedicated to the production of complex exopolysaccharides such as the enterobacterial O-antigen. The most likely heterogeneity would be in the precise nature of the sugar molecule transferred.
Probab=37.41 E-value=2.3e+02 Score=26.48 Aligned_cols=75 Identities=16% Similarity=0.144 Sum_probs=43.9
Q ss_pred hHHHHHHHH---hCCCeEEEEecCCCccccccccccCceeEeecCCchhHHHhhhhcCCCCEEEE--EcCChHHHHHHHH
Q 028115 2 GKAVIKAAD---AAGLELVPVSFGTEEESGQKVEVCGKEIQVHGLSDRESVLASVFDKYPNMIVV--DYTVPAAVNGNAE 76 (213)
Q Consensus 2 G~~i~~~~~---~~~~elv~~~~~~~~~~g~~~~~~~~~v~i~~~~~~~~~l~~~~~~~~d~VvI--DFS~p~~~~~~~~ 76 (213)
|+.+++.+. +.+++++|.++..+...|..+ .++++.+.+++.+.+. +.+.|.|+| .-..++...+.++
T Consensus 137 ~~~l~~~l~~~~~~g~~vvGfidd~~~~~~~~i----~g~pVlg~~~l~~~i~---~~~id~ViIAip~~~~~~~~~ll~ 209 (456)
T TIGR03022 137 AAILYRALQSNPQLGLRPLAVVDTDPAASGRLL----TGLPVVGADDALRLYA---RTRYAYVIVAMPGTQAEDMARLVR 209 (456)
T ss_pred HHHHHHHHhhCccCCcEEEEEEeCCcccccccc----CCCcccChhHHHHHHH---hCCCCEEEEecCCccHHHHHHHHH
Confidence 456677765 246899999885432222221 1345544334444332 245663444 3346677888999
Q ss_pred HHHhcCC
Q 028115 77 LYSKVGV 83 (213)
Q Consensus 77 ~~~~~g~ 83 (213)
.|.+.++
T Consensus 210 ~l~~~~v 216 (456)
T TIGR03022 210 KLGALHF 216 (456)
T ss_pred HHHhCCC
Confidence 9998888
No 472
>PF04055 Radical_SAM: Radical SAM superfamily; InterPro: IPR007197 Radical SAM proteins catalyze diverse reactions, including unusual methylations, isomerization, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation. Evidence exists that these proteins generate a radical species by reductive cleavage of S:-adenosylmethionine (SAM) through an unusual Fe-S centre [, ].; GO: 0003824 catalytic activity, 0051536 iron-sulfur cluster binding; PDB: 2A5H_D 3T7V_A 3C8F_A 3CB8_A 2FB2_A 2FB3_A 3CIX_A 3IIX_A 3IIZ_A 3CIW_A ....
Probab=37.38 E-value=78 Score=23.69 Aligned_cols=35 Identities=29% Similarity=0.485 Sum_probs=25.3
Q ss_pred hHHHHHHHHHHHhcCCC----EEEEcCCCCHHHHHHHHH
Q 028115 68 PAAVNGNAELYSKVGVP----FVMGTTGGDRVRLHETIE 102 (213)
Q Consensus 68 p~~~~~~~~~~~~~g~~----~ViGTTG~~~~~~~~~~~ 102 (213)
++.+.++++.+.+.|++ .++|..|.++++++++.+
T Consensus 126 ~~~~~~~l~~l~~~g~~~~~~~i~~~~~~~~~e~~~~~~ 164 (166)
T PF04055_consen 126 FERVLEALERLKEAGIPRVIIFIVGLPGENDEEIEETIR 164 (166)
T ss_dssp HHHHHHHHHHHHHTTSETEEEEEEEBTTTSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCcEEEEEEEeCCCCHHHHHHHhC
Confidence 45667888899999887 455666677777766654
No 473
>PRK00724 formate dehydrogenase accessory protein; Reviewed
Probab=37.38 E-value=1.7e+02 Score=25.79 Aligned_cols=58 Identities=10% Similarity=0.135 Sum_probs=43.3
Q ss_pred EEcCChHHHHHHHHHHHhcCCCE---EEEcCCCCHHHHHHHHHccCCcEEEc--cChhHHHHH
Q 028115 63 VDYTVPAAVNGNAELYSKVGVPF---VMGTTGGDRVRLHETIENSNVYAVIS--PQMGKQVVA 120 (213)
Q Consensus 63 IDFS~p~~~~~~~~~~~~~g~~~---ViGTTG~~~~~~~~~~~~~~~~~v~a--~N~SlGv~l 120 (213)
=|-...+++...+=+|+..|+++ ++-|||=-..++-.=+-.+++|+++| +-.|++|.+
T Consensus 176 EDIGRHNAvDKviG~all~g~~~~~~~l~~SGR~s~emv~Ka~~aGipvivS~saPT~lAVel 238 (263)
T PRK00724 176 EDVGRHNALDKLIGAALRAGIPLRDGALLVSGRASSEMVQKAAMAGIPILVAVSAPTSLAVEL 238 (263)
T ss_pred ecCchhHHHHHHHHHHHHcCCCccCcEEEEeCCchHHHHHHHHHcCCcEEEEcccchHHHHHH
Confidence 48899999999999999999874 77788854444322233578999885 668887743
No 474
>cd06307 PBP1_uncharacterized_sugar_binding Periplasmic sugar-binding domain of uncharacterized transport systems. Periplasmic sugar-binding domain of uncharacterized transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. The members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes.
Probab=37.37 E-value=1.7e+02 Score=24.30 Aligned_cols=37 Identities=16% Similarity=0.141 Sum_probs=23.6
Q ss_pred HhhhhcCCCCEEEEEcCChHHHHHHHHHHHhcCCCEEE
Q 028115 50 LASVFDKYPNMIVVDYTVPAAVNGNAELYSKVGVPFVM 87 (213)
Q Consensus 50 l~~~~~~~~d~VvIDFS~p~~~~~~~~~~~~~g~~~Vi 87 (213)
+..+.. ++|.+++--...+...+.++.+.+.++|+|.
T Consensus 52 i~~~~~-~vdgiii~~~~~~~~~~~i~~~~~~~ipvV~ 88 (275)
T cd06307 52 LLRLGA-RSDGVALVAPDHPQVRAAVARLAAAGVPVVT 88 (275)
T ss_pred HHHHHh-cCCEEEEeCCCcHHHHHHHHHHHHCCCcEEE
Confidence 444444 7884444323334456778899999999984
No 475
>PRK14851 hypothetical protein; Provisional
Probab=37.34 E-value=62 Score=32.60 Aligned_cols=32 Identities=13% Similarity=0.092 Sum_probs=24.6
Q ss_pred CCCEEEEEcCCh---HHHHHHHHHHHhcCCCEEEEc
Q 028115 57 YPNMIVVDYTVP---AAVNGNAELYSKVGVPFVMGT 89 (213)
Q Consensus 57 ~~d~VvIDFS~p---~~~~~~~~~~~~~g~~~ViGT 89 (213)
.+| +|||-+.. +.-....+.|.++++|+|.++
T Consensus 133 ~~D-vVid~~D~~~~~~r~~l~~~c~~~~iP~i~~g 167 (679)
T PRK14851 133 GVD-VVLDGLDFFQFEIRRTLFNMAREKGIPVITAG 167 (679)
T ss_pred CCC-EEEECCCCCcHHHHHHHHHHHHHCCCCEEEee
Confidence 678 88998874 333456678999999999876
No 476
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=37.33 E-value=87 Score=24.15 Aligned_cols=21 Identities=10% Similarity=0.202 Sum_probs=14.2
Q ss_pred ChHHHHHHHHhCCCeEEEEec
Q 028115 1 MGKAVIKAADAAGLELVPVSF 21 (213)
Q Consensus 1 MG~~i~~~~~~~~~elv~~~~ 21 (213)
+|..+++.+...|+.=+..+|
T Consensus 10 lGs~ia~~L~~~Gv~~i~ivD 30 (143)
T cd01483 10 LGSEIALNLARSGVGKITLID 30 (143)
T ss_pred HHHHHHHHHHHCCCCEEEEEc
Confidence 478888888877764333455
No 477
>PRK13399 fructose-1,6-bisphosphate aldolase; Provisional
Probab=37.22 E-value=1.7e+02 Score=27.15 Aligned_cols=54 Identities=9% Similarity=0.057 Sum_probs=38.8
Q ss_pred CCCEEEEEcCChHHHHHHHHHHHhcCCCEEEEcCCCCH-----H----HHHHHHHccC-CcEEE
Q 028115 57 YPNMIVVDYTVPAAVNGNAELYSKVGVPFVMGTTGGDR-----V----RLHETIENSN-VYAVI 110 (213)
Q Consensus 57 ~~d~VvIDFS~p~~~~~~~~~~~~~g~~~ViGTTG~~~-----~----~~~~~~~~~~-~~~v~ 110 (213)
+.-+-.+.+.+.+.+...++.|.+.+.|+++.++-... + -++.+++.+. +||.+
T Consensus 17 ~yaV~AfN~~n~e~~~avi~AAEe~~sPvIlq~s~~~~~~~g~~~~~~~v~~~ae~~~~VPVaL 80 (347)
T PRK13399 17 GYGVPAFNVNNMEQILAIMEAAEATDSPVILQASRGARKYAGDAMLRHMVLAAAEMYPDIPICL 80 (347)
T ss_pred CceEEEEEeCCHHHHHHHHHHHHHhCCCEEEECCcchhhhCCHHHHHHHHHHHHHhcCCCcEEE
Confidence 44446788889999999999999999999998865432 1 2344555564 88865
No 478
>PRK05650 short chain dehydrogenase; Provisional
Probab=37.11 E-value=2.2e+02 Score=23.89 Aligned_cols=72 Identities=15% Similarity=0.145 Sum_probs=43.7
Q ss_pred ChHHHHHHHHhCCCeEEEEecCCCccccccccccCceeEeecCCchhHHHhhhhcCCCC--EEEEEcCChHHHHHHHHHH
Q 028115 1 MGKAVIKAADAAGLELVPVSFGTEEESGQKVEVCGKEIQVHGLSDRESVLASVFDKYPN--MIVVDYTVPAAVNGNAELY 78 (213)
Q Consensus 1 MG~~i~~~~~~~~~elv~~~~~~~~~~g~~~~~~~~~v~i~~~~~~~~~l~~~~~~~~d--~VvIDFS~p~~~~~~~~~~ 78 (213)
+|+.+++.+.+.|..++.. ++.. ..+++..+++.....+ .+-.|++.++.+.+.++.+
T Consensus 12 IG~~la~~l~~~g~~V~~~-~r~~-------------------~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~i 71 (270)
T PRK05650 12 LGRAIALRWAREGWRLALA-DVNE-------------------EGGEETLKLLREAGGDGFYQRCDVRDYSQLTALAQAC 71 (270)
T ss_pred HHHHHHHHHHHCCCEEEEE-eCCH-------------------HHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHH
Confidence 4888888888888887643 2221 1112222222211223 2456999999888887766
Q ss_pred Hhc--CCCEEEEcCCC
Q 028115 79 SKV--GVPFVMGTTGG 92 (213)
Q Consensus 79 ~~~--g~~~ViGTTG~ 92 (213)
.+. ++..||-..|.
T Consensus 72 ~~~~~~id~lI~~ag~ 87 (270)
T PRK05650 72 EEKWGGIDVIVNNAGV 87 (270)
T ss_pred HHHcCCCCEEEECCCC
Confidence 553 57888888874
No 479
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=37.08 E-value=1.9e+02 Score=24.38 Aligned_cols=62 Identities=13% Similarity=0.192 Sum_probs=37.3
Q ss_pred CCCCEEEEEcCChHHHHHHHHHHHhcCCCEEEEcCCCC-HHHHHHHHHccCCcEEEccChhHHH
Q 028115 56 KYPNMIVVDYTVPAAVNGNAELYSKVGVPFVMGTTGGD-RVRLHETIENSNVYAVISPQMGKQV 118 (213)
Q Consensus 56 ~~~d~VvIDFS~p~~~~~~~~~~~~~g~~~ViGTTG~~-~~~~~~~~~~~~~~~v~a~N~SlGv 118 (213)
.....+=|=|++|.+....-+.+.+++.++++|.=... .++. +.+.+++.-.+++|++...+
T Consensus 34 gGi~~iEvt~~~~~~~~~i~~l~~~~~~~~~iGaGTV~~~~~~-~~a~~aGA~fivsp~~~~~v 96 (206)
T PRK09140 34 AGFRAIEIPLNSPDPFDSIAALVKALGDRALIGAGTVLSPEQV-DRLADAGGRLIVTPNTDPEV 96 (206)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHHHcCCCcEEeEEecCCHHHH-HHHHHcCCCEEECCCCCHHH
Confidence 34443334457777666666666667777777776654 4444 33334566777777777654
No 480
>PRK10161 transcriptional regulator PhoB; Provisional
Probab=37.07 E-value=2.2e+02 Score=22.81 Aligned_cols=72 Identities=17% Similarity=0.327 Sum_probs=36.7
Q ss_pred chhHHHhhhhcCCCCEEEEEcCChHH-HHHHHHHHHh----cCCCEEEEcCCCCHHHHHHHHHccCCcEEEccChhHH
Q 028115 45 DRESVLASVFDKYPNMIVVDYTVPAA-VNGNAELYSK----VGVPFVMGTTGGDRVRLHETIENSNVYAVISPQMGKQ 117 (213)
Q Consensus 45 ~~~~~l~~~~~~~~d~VvIDFS~p~~-~~~~~~~~~~----~g~~~ViGTTG~~~~~~~~~~~~~~~~~v~a~N~SlG 117 (213)
+.++++..+....+|.|++|...|.. ..+.++...+ ..+|+|+-|.--+.+...... .++..-++.-.++.-
T Consensus 34 ~~~~~~~~~~~~~~dlvild~~l~~~~g~~~~~~l~~~~~~~~~pvi~ls~~~~~~~~~~~~-~~Ga~~~l~kp~~~~ 110 (229)
T PRK10161 34 DYDSAVNQLNEPWPDLILLDWMLPGGSGIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGL-ETGADDYITKPFSPK 110 (229)
T ss_pred CHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHhccccCCCCEEEEECCCCHHHHHHHH-HcCCCEEEECCCCHH
Confidence 44444444444568988999887753 2344444333 357777765433333332222 234333444445553
No 481
>cd06317 PBP1_ABC_sugar_binding_like_8 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Pperiplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=37.01 E-value=1.5e+02 Score=24.51 Aligned_cols=34 Identities=18% Similarity=0.105 Sum_probs=23.1
Q ss_pred cCCCCEEEEEcCChHHHHHHHHHHHhcCCCEEEE
Q 028115 55 DKYPNMIVVDYTVPAAVNGNAELYSKVGVPFVMG 88 (213)
Q Consensus 55 ~~~~d~VvIDFS~p~~~~~~~~~~~~~g~~~ViG 88 (213)
..++|.++|-=..++...+.++.+.+.++|+|.-
T Consensus 54 ~~~vdgiii~~~~~~~~~~~l~~~~~~~iPvV~~ 87 (275)
T cd06317 54 AQKVDGIILWPTDGQAYIPGLRKAKQAGIPVVIT 87 (275)
T ss_pred HcCCCEEEEecCCccccHHHHHHHHHCCCcEEEe
Confidence 3578854453333455667888889999998763
No 482
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=37.00 E-value=1.8e+02 Score=26.33 Aligned_cols=102 Identities=12% Similarity=0.052 Sum_probs=55.3
Q ss_pred ChHHHHHHHHhCCCeEEEEecCCCccccccccccCceeEeecCCchhHHHhhhhcCCCCEEEEEcCChH-HHHHHHH---
Q 028115 1 MGKAVIKAADAAGLELVPVSFGTEEESGQKVEVCGKEIQVHGLSDRESVLASVFDKYPNMIVVDYTVPA-AVNGNAE--- 76 (213)
Q Consensus 1 MG~~i~~~~~~~~~elv~~~~~~~~~~g~~~~~~~~~v~i~~~~~~~~~l~~~~~~~~d~VvIDFS~p~-~~~~~~~--- 76 (213)
||+++++.+.+.|++++.+..+.+... . .....|+.+. +..+++ ..+| +|+=-.-|+ ......+
T Consensus 14 mG~AiA~~L~~sG~~Viv~~~~~~~~~-~--~a~~~Gv~~~---s~~ea~-----~~AD-iVvLaVpp~~~~~~v~~ei~ 81 (314)
T TIGR00465 14 QGHAQALNLRDSGLNVIVGLRKGGASW-K--KATEDGFKVG---TVEEAI-----PQAD-LIMNLLPDEVQHEVYEAEIQ 81 (314)
T ss_pred HHHHHHHHHHHCCCeEEEEECcChhhH-H--HHHHCCCEEC---CHHHHH-----hcCC-EEEEeCCcHhHHHHHHHHHH
Confidence 899999999888888765444332111 0 0111233332 233333 2578 555555555 3322222
Q ss_pred HHHhcCCCEEEEcCCCCHHHHHHHHHccCCcEE-EccChhH
Q 028115 77 LYSKVGVPFVMGTTGGDRVRLHETIENSNVYAV-ISPQMGK 116 (213)
Q Consensus 77 ~~~~~g~~~ViGTTG~~~~~~~~~~~~~~~~~v-~a~N~Sl 116 (213)
..++.+ .+|+=.-|++-..++..-. .+++|+ +.||...
T Consensus 82 ~~l~~g-~iVs~aaG~~i~~~~~~~~-~~~~VvrvmPn~p~ 120 (314)
T TIGR00465 82 PLLKEG-KTLGFSHGFNIHFVQIVPP-KDVDVVMVAPKGPG 120 (314)
T ss_pred hhCCCC-cEEEEeCCccHhhccccCC-CCCcEEEECCCCCc
Confidence 223334 4888899999776543321 236665 6899775
No 483
>PLN02254 gibberellin 3-beta-dioxygenase
Probab=37.00 E-value=55 Score=30.14 Aligned_cols=35 Identities=26% Similarity=0.173 Sum_probs=30.3
Q ss_pred EEEcCChHHHHHHHHHHHhcCCCEEEEcCCCCHHHH
Q 028115 62 VVDYTVPAAVNGNAELYSKVGVPFVMGTTGGDRVRL 97 (213)
Q Consensus 62 vIDFS~p~~~~~~~~~~~~~g~~~ViGTTG~~~~~~ 97 (213)
+|||+.++.+.+..++|.+.|-=.|++ .|.+.+.+
T Consensus 59 vIDl~~~~~~~~l~~Ac~~~GFF~vvn-HGI~~~l~ 93 (358)
T PLN02254 59 VIDLSDPNALTLIGHACETWGVFQVTN-HGIPLSLL 93 (358)
T ss_pred eEeCCCHHHHHHHHHHHHHCCEEEEEc-CCCCHHHH
Confidence 799999999999999999999988887 78876543
No 484
>TIGR02875 spore_0_A sporulation transcription factor Spo0A. Spo0A, the stage 0 sporulation protein A, is a transcription factor critical for the initiation of sporulation. It contains a response regulator receiver domain (pfam00072). In Bacillus subtilis, it works together with response regulator Spo0F and the phosphotransferase Spo0B, both of which are missing from at least some sporulating species and thus not part of the endospore forming bacteria minimal gene set. Spo0A, however, is universal among endospore-forming species.
Probab=37.00 E-value=1.5e+02 Score=24.79 Aligned_cols=68 Identities=18% Similarity=0.282 Sum_probs=34.1
Q ss_pred chhHHHhhhhcCCCCEEEEEcCChHH-HHHHHHHHHhc---CCCEEEEcCCCCHHHHHHHHHccC-CcEEEcc
Q 028115 45 DRESVLASVFDKYPNMIVVDYTVPAA-VNGNAELYSKV---GVPFVMGTTGGDRVRLHETIENSN-VYAVISP 112 (213)
Q Consensus 45 ~~~~~l~~~~~~~~d~VvIDFS~p~~-~~~~~~~~~~~---g~~~ViGTTG~~~~~~~~~~~~~~-~~~v~a~ 112 (213)
+.+++++.+....||.|++|...|.. -.+.++...+. +.+.|+-.|++.......-....+ ..++.-|
T Consensus 36 ~~~eal~~l~~~~~DlvllD~~mp~~dG~~~l~~i~~~~~~~~~~iI~lt~~~~~~~~~~~~~~G~~~~l~KP 108 (262)
T TIGR02875 36 NGVDALELIKEQQPDVVVLDIIMPHLDGIGVLEKLNEIELSARPRVIMLSAFGQEKITQRAVALGADYYVLKP 108 (262)
T ss_pred CHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHhhccccCCeEEEEeCCCCHHHHHHHHHCCCCEEEECC
Confidence 44445554555578988999988752 22333333322 224444456766544322222344 3344444
No 485
>cd08249 enoyl_reductase_like enoyl_reductase_like. Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol de
Probab=36.94 E-value=1.7e+02 Score=25.68 Aligned_cols=88 Identities=11% Similarity=0.051 Sum_probs=45.2
Q ss_pred ChHHHHHHHHhCCCeEEEEecCCCccccccccccCceeEeecCCchhHHHhhhhcCCCCEEEEEcCCh-HHHHHHHHHHH
Q 028115 1 MGKAVIKAADAAGLELVPVSFGTEEESGQKVEVCGKEIQVHGLSDRESVLASVFDKYPNMIVVDYTVP-AAVNGNAELYS 79 (213)
Q Consensus 1 MG~~i~~~~~~~~~elv~~~~~~~~~~g~~~~~~~~~v~i~~~~~~~~~l~~~~~~~~d~VvIDFS~p-~~~~~~~~~~~ 79 (213)
+|+++++.+...|+.++..........-+..+. ..-+.. ...++.+.+.++....+| +++|++.. +.+.+.++.+.
T Consensus 167 vg~~~~~~a~~~G~~v~~~~~~~~~~~~~~~g~-~~v~~~-~~~~~~~~l~~~~~~~~d-~vl~~~g~~~~~~~~~~~l~ 243 (339)
T cd08249 167 VGTLAIQLAKLAGYKVITTASPKNFDLVKSLGA-DAVFDY-HDPDVVEDIRAATGGKLR-YALDCISTPESAQLCAEALG 243 (339)
T ss_pred HHHHHHHHHHHcCCeEEEEECcccHHHHHhcCC-CEEEEC-CCchHHHHHHHhcCCCee-EEEEeeccchHHHHHHHHHh
Confidence 467777777788888876542211000011111 000111 112233323333233467 88998775 77777777766
Q ss_pred h--cCCCEEEEcCC
Q 028115 80 K--VGVPFVMGTTG 91 (213)
Q Consensus 80 ~--~g~~~ViGTTG 91 (213)
. .|.=+.+|.+.
T Consensus 244 ~~~~g~~v~~g~~~ 257 (339)
T cd08249 244 RSGGGKLVSLLPVP 257 (339)
T ss_pred ccCCCEEEEecCCC
Confidence 6 66666666554
No 486
>cd06389 PBP1_iGluR_AMPA_GluR2 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR2 subunit of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR2 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs).
Probab=36.90 E-value=2e+02 Score=26.05 Aligned_cols=55 Identities=13% Similarity=0.137 Sum_probs=39.4
Q ss_pred chhHHHhhhhcCCCCEEEEEcCChHHHHHHHHHHHhcCCCE-----EEEcCCCCHHHHHHH
Q 028115 45 DRESVLASVFDKYPNMIVVDYTVPAAVNGNAELYSKVGVPF-----VMGTTGGDRVRLHET 100 (213)
Q Consensus 45 ~~~~~l~~~~~~~~d~VvIDFS~p~~~~~~~~~~~~~g~~~-----ViGTTG~~~~~~~~~ 100 (213)
|....|.++...+++.|++ -..++.+...++.+.+.|+.. ++|+-||...++..+
T Consensus 164 d~~~~L~~ik~~~~~~Iil-~~~~~~~~~il~qa~~~gm~~~~y~~il~~~~~~~~~l~~~ 223 (370)
T cd06389 164 AYRSLFQDLENKKERRVIL-DCERDKVNDIVDQVITIGKHVKGYHYIIANLGFTDGDLSKI 223 (370)
T ss_pred HHHHHHHHhccccceEEEE-ECCHHHHHHHHHHHHHhCccccceEEEEccCCccccchhhh
Confidence 5666677777778884455 555777889999999998742 577778876566544
No 487
>TIGR02317 prpB methylisocitrate lyase. Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus.
Probab=36.83 E-value=3.1e+02 Score=24.56 Aligned_cols=57 Identities=21% Similarity=0.205 Sum_probs=34.1
Q ss_pred CCCCEEEEEcCChHHHHHHHHHHHhcCCCEEE-----EcCC-CCHHHHHHHHHccCCcEEEccChhHHH
Q 028115 56 KYPNMIVVDYTVPAAVNGNAELYSKVGVPFVM-----GTTG-GDRVRLHETIENSNVYAVISPQMGKQV 118 (213)
Q Consensus 56 ~~~d~VvIDFS~p~~~~~~~~~~~~~g~~~Vi-----GTTG-~~~~~~~~~~~~~~~~~v~a~N~SlGv 118 (213)
..+|.|.|.. +....+.-+++.+..+|+++ |.|+ ++.+++.++ ++..+.-||+.+-.
T Consensus 173 AGAD~vfi~g--~~~~e~i~~~~~~i~~Pl~~n~~~~~~~p~~s~~eL~~l----Gv~~v~~~~~~~~a 235 (285)
T TIGR02317 173 AGADMIFPEA--LTSLEEFRQFAKAVKVPLLANMTEFGKTPLFTADELREA----GYKMVIYPVTAFRA 235 (285)
T ss_pred cCCCEEEeCC--CCCHHHHHHHHHhcCCCEEEEeccCCCCCCCCHHHHHHc----CCcEEEEchHHHHH
Confidence 3578777876 33455555666677788843 4444 355555443 66666666665543
No 488
>cd01409 SIRT4 SIRT4: Eukaryotic and prokaryotic group (class2) which includes human sirtuin SIRT4 and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span.
Probab=36.73 E-value=85 Score=27.53 Aligned_cols=54 Identities=17% Similarity=0.197 Sum_probs=34.1
Q ss_pred CCCEEEEEcCChH-HHHHHHHHHHhcCCCEEEEcCCCC--HHHHHHHHHccCCcEEE
Q 028115 57 YPNMIVVDYTVPA-AVNGNAELYSKVGVPFVMGTTGGD--RVRLHETIENSNVYAVI 110 (213)
Q Consensus 57 ~~d~VvIDFS~p~-~~~~~~~~~~~~g~~~ViGTTG~~--~~~~~~~~~~~~~~~v~ 110 (213)
+||+|+.+=..|+ ......+.+.+..+=+||||+.-- ...+-..+...+.|+++
T Consensus 180 rP~VV~FGE~lp~~~~~~a~~~~~~aDlllviGTSl~V~pa~~l~~~a~~~g~~vii 236 (260)
T cd01409 180 KPDVVFFGENVPRDRVVTAAARLAEADALLVLGSSLMVYSGYRFVLAAAEAGLPIAI 236 (260)
T ss_pred CCCEEECCCCCCHHHHHHHHHHHhcCCEEEEeCcCceecchhhHHHHHHHCCCcEEE
Confidence 4784444445565 456666677778899999999853 34444444445666654
No 489
>cd06273 PBP1_GntR_like_1 This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational
Probab=36.72 E-value=2.4e+02 Score=23.16 Aligned_cols=33 Identities=15% Similarity=0.345 Sum_probs=19.8
Q ss_pred hhcCCCCEEEEEcCChHHHHHHHHHHHhcCCCEEE
Q 028115 53 VFDKYPNMIVVDYTVPAAVNGNAELYSKVGVPFVM 87 (213)
Q Consensus 53 ~~~~~~d~VvIDFS~p~~~~~~~~~~~~~g~~~Vi 87 (213)
+....+|.++| +.. ......++.+.+.|+|+|.
T Consensus 51 l~~~~vdgiii-~~~-~~~~~~~~~l~~~~iPvv~ 83 (268)
T cd06273 51 LLERGVDGLAL-IGL-DHSPALLDLLARRGVPYVA 83 (268)
T ss_pred HHhcCCCEEEE-eCC-CCCHHHHHHHHhCCCCEEE
Confidence 33446784343 322 2234566778889999886
No 490
>PRK05872 short chain dehydrogenase; Provisional
Probab=36.71 E-value=2e+02 Score=24.83 Aligned_cols=71 Identities=24% Similarity=0.240 Sum_probs=44.4
Q ss_pred ChHHHHHHHHhCCCeEEEEecCCCccccccccccCceeEeecCCchhHHHhhhhcCCCCE--EEEEcCChHHHHHHHHHH
Q 028115 1 MGKAVIKAADAAGLELVPVSFGTEEESGQKVEVCGKEIQVHGLSDRESVLASVFDKYPNM--IVVDYTVPAAVNGNAELY 78 (213)
Q Consensus 1 MG~~i~~~~~~~~~elv~~~~~~~~~~g~~~~~~~~~v~i~~~~~~~~~l~~~~~~~~d~--VvIDFS~p~~~~~~~~~~ 78 (213)
+|+.+++.+.+.|..++.. .+.. +.+++..+++. ...+. +..|++.++.+...++.+
T Consensus 21 IG~~ia~~l~~~G~~V~~~-~r~~-------------------~~l~~~~~~l~-~~~~~~~~~~Dv~d~~~v~~~~~~~ 79 (296)
T PRK05872 21 IGAELARRLHARGAKLALV-DLEE-------------------AELAALAAELG-GDDRVLTVVADVTDLAAMQAAAEEA 79 (296)
T ss_pred HHHHHHHHHHHCCCEEEEE-eCCH-------------------HHHHHHHHHhc-CCCcEEEEEecCCCHHHHHHHHHHH
Confidence 4788888888888876643 2221 11222222221 12231 237999999999988877
Q ss_pred Hhc--CCCEEEEcCCC
Q 028115 79 SKV--GVPFVMGTTGG 92 (213)
Q Consensus 79 ~~~--g~~~ViGTTG~ 92 (213)
.+. ++.+||-..|.
T Consensus 80 ~~~~g~id~vI~nAG~ 95 (296)
T PRK05872 80 VERFGGIDVVVANAGI 95 (296)
T ss_pred HHHcCCCCEEEECCCc
Confidence 663 58899988885
No 491
>COG0561 Cof Predicted hydrolases of the HAD superfamily [General function prediction only]
Probab=36.66 E-value=80 Score=26.81 Aligned_cols=46 Identities=15% Similarity=0.191 Sum_probs=32.4
Q ss_pred ChHHHHHHHHHHHhcCCCEEEEcCCCCHHHHHHHHHccCC-cEEEccC
Q 028115 67 VPAAVNGNAELYSKVGVPFVMGTTGGDRVRLHETIENSNV-YAVISPQ 113 (213)
Q Consensus 67 ~p~~~~~~~~~~~~~g~~~ViGTTG~~~~~~~~~~~~~~~-~~v~a~N 113 (213)
.++.+.+.++.+.+.|+++++. ||-+...+..+.+.-+. ..+++.|
T Consensus 21 i~~~~~~al~~~~~~g~~v~ia-TGR~~~~~~~~~~~l~~~~~~I~~N 67 (264)
T COG0561 21 ISPETKEALARLREKGVKVVLA-TGRPLPDVLSILEELGLDGPLITFN 67 (264)
T ss_pred cCHHHHHHHHHHHHCCCEEEEE-CCCChHHHHHHHHHcCCCccEEEeC
Confidence 4788899999999999999995 67665555555554442 2455655
No 492
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=36.61 E-value=75 Score=25.96 Aligned_cols=21 Identities=10% Similarity=0.156 Sum_probs=13.8
Q ss_pred ChHHHHHHHHhCCCeEEEEec
Q 028115 1 MGKAVIKAADAAGLELVPVSF 21 (213)
Q Consensus 1 MG~~i~~~~~~~~~elv~~~~ 21 (213)
||..+++.+...|+.=+-.+|
T Consensus 10 lGs~ia~~La~~Gvg~i~lvD 30 (174)
T cd01487 10 LGSNIAVLLARSGVGNLKLVD 30 (174)
T ss_pred HHHHHHHHHHHcCCCeEEEEe
Confidence 688888888776764233344
No 493
>cd06366 PBP1_GABAb_receptor Ligand-binding domain of GABAb receptors, which are metabotropic transmembrane receptors for gamma-aminobutyric acid (GABA). Ligand-binding domain of GABAb receptors, which are metabotropic transmembrane receptors for gamma-aminobutyric acid (GABA). GABA is the major inhibitory neurotransmitter in the mammalian CNS and, like glutamate and other transmitters, acts via both ligand gated ion channels (GABAa receptors) and G-protein coupled receptors (GABAb). GABAa receptors are members of the ionotropic receptor superfamily which includes alpha-adrenergic and glycine receptors. The GABAb receptor is a member of a receptor superfamily which includes the mGlu receptors. The GABAb receptor is coupled to G alpha_i proteins, and activation causes a decrease in calcium, an increase in potassium membrane conductance, and inhibition of cAMP formation. The response is thus inhibitory and leads to hyperpolarization and decreased neurotransmitter release, for example.
Probab=36.60 E-value=2.4e+02 Score=24.56 Aligned_cols=49 Identities=16% Similarity=0.021 Sum_probs=36.1
Q ss_pred CchhHHHhhhhcCCCCEEEEEcCChHHHHHHHHHHHhcCCC----EEEEcCCCC
Q 028115 44 SDRESVLASVFDKYPNMIVVDYTVPAAVNGNAELYSKVGVP----FVMGTTGGD 93 (213)
Q Consensus 44 ~~~~~~l~~~~~~~~d~VvIDFS~p~~~~~~~~~~~~~g~~----~ViGTTG~~ 93 (213)
.|+...+.++....+| +||=+..+......++.+.+.|.. ..+++.++.
T Consensus 179 ~d~~~~l~~i~~~~~d-vvi~~~~~~~~~~~~~~a~~~g~~~~~~~~i~~~~~~ 231 (350)
T cd06366 179 DDITDALKKLKEKDSR-VIVVHFSPDLARRVFCEAYKLGMMGKGYVWILTDWLS 231 (350)
T ss_pred hHHHHHHHHHhcCCCe-EEEEECChHHHHHHHHHHHHcCCcCCCEEEEECcchh
Confidence 4777777777767788 677777788888999999998872 235555543
No 494
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=36.55 E-value=1.1e+02 Score=28.01 Aligned_cols=84 Identities=17% Similarity=0.067 Sum_probs=47.8
Q ss_pred hHHHHHHHHhCCCeEEEEecCCCcc--ccccccccCceeEeecC--CchhHHHhhhhc-CCCCEEEEEcCCh--------
Q 028115 2 GKAVIKAADAAGLELVPVSFGTEEE--SGQKVEVCGKEIQVHGL--SDRESVLASVFD-KYPNMIVVDYTVP-------- 68 (213)
Q Consensus 2 G~~i~~~~~~~~~elv~~~~~~~~~--~g~~~~~~~~~v~i~~~--~~~~~~l~~~~~-~~~d~VvIDFS~p-------- 68 (213)
|+.+++.+...|..++.+++..+.. .-+.++ ... +... .+..+.+.++.. ..+| ++||++-.
T Consensus 198 G~~aiqlAk~~Ga~~vi~~d~~~~r~~~a~~~G---a~~-v~~~~~~~~~~~v~~~~~~~g~D-vvid~~G~~~~~~~~~ 272 (393)
T TIGR02819 198 GLAAAASAQLLGAAVVIVGDLNPARLAQARSFG---CET-VDLSKDATLPEQIEQILGEPEVD-CAVDCVGFEARGHGHD 272 (393)
T ss_pred HHHHHHHHHHcCCceEEEeCCCHHHHHHHHHcC---CeE-EecCCcccHHHHHHHHcCCCCCc-EEEECCCCcccccccc
Confidence 6777777777887765555433211 111111 111 2111 133332332221 2467 89999985
Q ss_pred -------HHHHHHHHHHHhcCCCEEEEcC
Q 028115 69 -------AAVNGNAELYSKVGVPFVMGTT 90 (213)
Q Consensus 69 -------~~~~~~~~~~~~~g~~~ViGTT 90 (213)
.++...++.+...|.=+++|+.
T Consensus 273 ~~~~~~~~~~~~~~~~~~~~G~i~~~G~~ 301 (393)
T TIGR02819 273 GKKEAPATVLNSLMEVTRVGGAIGIPGLY 301 (393)
T ss_pred ccccchHHHHHHHHHHhhCCCEEEEeeec
Confidence 3788888888888888888885
No 495
>PRK06914 short chain dehydrogenase; Provisional
Probab=36.55 E-value=1.7e+02 Score=24.69 Aligned_cols=71 Identities=14% Similarity=0.212 Sum_probs=42.1
Q ss_pred ChHHHHHHHHhCCCeEEEEecCCCccccccccccCceeEeecCCchhHHHhhhhc----CCCCEEEEEcCChHHHHHHHH
Q 028115 1 MGKAVIKAADAAGLELVPVSFGTEEESGQKVEVCGKEIQVHGLSDRESVLASVFD----KYPNMIVVDYTVPAAVNGNAE 76 (213)
Q Consensus 1 MG~~i~~~~~~~~~elv~~~~~~~~~~g~~~~~~~~~v~i~~~~~~~~~l~~~~~----~~~d~VvIDFS~p~~~~~~~~ 76 (213)
+|+.+++.+.++|..|+.. ++.+. +.++..+.+.. .....+..|++.++.+.. ++
T Consensus 15 iG~~la~~l~~~G~~V~~~-~r~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~-~~ 73 (280)
T PRK06914 15 FGLLTTLELAKKGYLVIAT-MRNPE-------------------KQENLLSQATQLNLQQNIKVQQLDVTDQNSIHN-FQ 73 (280)
T ss_pred HHHHHHHHHHhCCCEEEEE-eCCHH-------------------HHHHHHHHHHhcCCCCceeEEecCCCCHHHHHH-HH
Confidence 5889998888889888754 32221 11111111110 112224679999999988 77
Q ss_pred HHHhc--CCCEEEEcCCC
Q 028115 77 LYSKV--GVPFVMGTTGG 92 (213)
Q Consensus 77 ~~~~~--g~~~ViGTTG~ 92 (213)
.+.+. ++..|+=..|.
T Consensus 74 ~~~~~~~~id~vv~~ag~ 91 (280)
T PRK06914 74 LVLKEIGRIDLLVNNAGY 91 (280)
T ss_pred HHHHhcCCeeEEEECCcc
Confidence 66553 56777777774
No 496
>cd00946 FBP_aldolase_IIA Class II Type A, Fructose-1,6-bisphosphate (FBP) aldolases. The enzyme catalyses the zinc-dependent, reversible aldol condensation of dihydroxyacetone phosphate with glyceraldehyde-3-phosphate to form fructose-1,6-bisphosphate. FBP aldolase is homodimeric and used in gluconeogenesis and glycolysis. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=36.48 E-value=1.7e+02 Score=27.16 Aligned_cols=37 Identities=16% Similarity=0.213 Sum_probs=31.1
Q ss_pred CCCCEEEEEcCChHHHHHHHHHHHhcCCCEEEEcCCC
Q 028115 56 KYPNMIVVDYTVPAAVNGNAELYSKVGVPFVMGTTGG 92 (213)
Q Consensus 56 ~~~d~VvIDFS~p~~~~~~~~~~~~~g~~~ViGTTG~ 92 (213)
.+.-+-.+.+.+.+.+...++.|.+.+.|+++.++-.
T Consensus 14 ~~yAV~AfN~~n~e~~~avi~AAee~~sPvIiq~s~~ 50 (345)
T cd00946 14 NGFAIPAVNCTSSSTINAVLEAARDAKSPIIIQFSNG 50 (345)
T ss_pred CCceEEEEeeCCHHHHHHHHHHHHHhCCCEEEECCcc
Confidence 3444468899999999999999999999999988653
No 497
>cd06365 PBP1_Pheromone_receptor Ligand-binding domain of the V2R phermone receptor, a member of the family C receptors within the G-protein coupled receptor superfamily. Ligand-binding domain of the V2R phermone receptor, a member of the family C receptors within the G-protein coupled receptor superfamily, which also includes the metabotropic glutamate receptor, the GABAb receptor, the calcium-sensing receptor (CaSR), the T1R taste receptor, and a small group of uncharacterized orphan receptors.
Probab=36.42 E-value=2.4e+02 Score=26.51 Aligned_cols=48 Identities=8% Similarity=0.041 Sum_probs=30.6
Q ss_pred hhHHHhhhhcCCCCEEEEEcCChHHHHHHHHHHHh-cCC-CEEEEcCCCCH
Q 028115 46 RESVLASVFDKYPNMIVVDYTVPAAVNGNAELYSK-VGV-PFVMGTTGGDR 94 (213)
Q Consensus 46 ~~~~l~~~~~~~~d~VvIDFS~p~~~~~~~~~~~~-~g~-~~ViGTTG~~~ 94 (213)
....+.++.+..++ |||=|+.++.+...+..+.+ .+. ...|||.||..
T Consensus 220 ~~~~l~~i~~~~ar-vIvl~~~~~~~~~l~~~~~~~~~~~~~wi~s~~w~~ 269 (469)
T cd06365 220 AEKYYNQIMTSSAK-VIIIYGDTDSLLEVSFRLWQYLLIGKVWITTSQWDV 269 (469)
T ss_pred HHHHHHHhhcCCCe-EEEEEcCcHHHHHHHHHHHHhccCceEEEeeccccc
Confidence 34455566566788 67777778777665544444 443 36679989953
No 498
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=36.29 E-value=62 Score=29.54 Aligned_cols=33 Identities=21% Similarity=0.313 Sum_probs=24.3
Q ss_pred CCCCEEEEEcCChHHHHHHH-HHHHhcCCCEEEEc
Q 028115 56 KYPNMIVVDYTVPAAVNGNA-ELYSKVGVPFVMGT 89 (213)
Q Consensus 56 ~~~d~VvIDFS~p~~~~~~~-~~~~~~g~~~ViGT 89 (213)
.++| +|||-+....+...+ ++|.++++|+|.|.
T Consensus 115 ~~~D-lVid~~D~~~~r~~in~~~~~~~ip~i~~~ 148 (338)
T PRK12475 115 KEVD-LIIDATDNFDTRLLINDLSQKYNIPWIYGG 148 (338)
T ss_pred cCCC-EEEEcCCCHHHHHHHHHHHHHcCCCEEEEE
Confidence 3578 889988765554443 67889999999764
No 499
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=36.27 E-value=2.7e+02 Score=29.57 Aligned_cols=79 Identities=15% Similarity=0.145 Sum_probs=43.2
Q ss_pred HHHHHhCCCeEEEEecCCCccccccccccCceeEeecCCchhHHHhhhhcCCCCEEEEEcCChHHHHHHHHHHHhcCCCE
Q 028115 6 IKAADAAGLELVPVSFGTEEESGQKVEVCGKEIQVHGLSDRESVLASVFDKYPNMIVVDYTVPAAVNGNAELYSKVGVPF 85 (213)
Q Consensus 6 ~~~~~~~~~elv~~~~~~~~~~g~~~~~~~~~v~i~~~~~~~~~l~~~~~~~~d~VvIDFS~p~~~~~~~~~~~~~g~~~ 85 (213)
++++.+.|++++. ++..+..+..+...+.. + ...+-+++.+++-+...++|.|+.-|.... .....+.+.+.|+++
T Consensus 582 ~~aLk~~G~~vI~-vn~npetvs~~~~~aD~-~-y~ep~~~e~vl~I~~~e~~dgVI~~~g~~~-~~~la~~le~~Gi~i 657 (1068)
T PRK12815 582 AFALKKEGYETIM-INNNPETVSTDYDTADR-L-YFEPLTLEDVLNVAEAENIKGVIVQFGGQT-AINLAKGLEEAGLTI 657 (1068)
T ss_pred HHHHHHcCCEEEE-EeCCccccccccccCce-E-EEccCCHHHHHHHHhhcCCCEEEEecCcHH-HHHHHHHHHHCCCeE
Confidence 6677788999874 45444333332211211 1 112335666665555567996666676653 344455566678775
Q ss_pred EEEc
Q 028115 86 VMGT 89 (213)
Q Consensus 86 ViGT 89 (213)
+||
T Consensus 658 -lG~ 660 (1068)
T PRK12815 658 -LGT 660 (1068)
T ss_pred -ECC
Confidence 443
No 500
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=36.23 E-value=1.4e+02 Score=26.69 Aligned_cols=88 Identities=17% Similarity=0.098 Sum_probs=45.4
Q ss_pred ChHHHHHHHHhCCCeEEEEecCCCccccccccccCceeEeec--CCchhHHHhhhhcCCCCEEEEEcCChHHHHHHHHHH
Q 028115 1 MGKAVIKAADAAGLELVPVSFGTEEESGQKVEVCGKEIQVHG--LSDRESVLASVFDKYPNMIVVDYTVPAAVNGNAELY 78 (213)
Q Consensus 1 MG~~i~~~~~~~~~elv~~~~~~~~~~g~~~~~~~~~v~i~~--~~~~~~~l~~~~~~~~d~VvIDFS~p~~~~~~~~~~ 78 (213)
+|+++++.+...|.++++. +..+........-.|....+.. ..+..+.+.+......| +++|++....+...++..
T Consensus 171 vG~~aiqlAk~~G~~Vi~~-~~~~~k~~~~~~~lGa~~vi~~~~~~~~~~~i~~~~~~gvD-~v~d~vG~~~~~~~~~~l 248 (348)
T PLN03154 171 VGQLVGQLAKLHGCYVVGS-AGSSQKVDLLKNKLGFDEAFNYKEEPDLDAALKRYFPEGID-IYFDNVGGDMLDAALLNM 248 (348)
T ss_pred HHHHHHHHHHHcCCEEEEE-cCCHHHHHHHHHhcCCCEEEECCCcccHHHHHHHHCCCCcE-EEEECCCHHHHHHHHHHh
Confidence 4778888888888886654 3222110000000011111111 11344434332222467 889998877777777776
Q ss_pred HhcCCCEEEEcC
Q 028115 79 SKVGVPFVMGTT 90 (213)
Q Consensus 79 ~~~g~~~ViGTT 90 (213)
...|.=+++|..
T Consensus 249 ~~~G~iv~~G~~ 260 (348)
T PLN03154 249 KIHGRIAVCGMV 260 (348)
T ss_pred ccCCEEEEECcc
Confidence 667766666653
Done!