BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028116
(213 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2L0B|A Chain A, Solution Nmr Structure Of Zinc Finger Domain Of E3
Ubiquitin-Protein Ligase Praja-1 From Homo Sapiens,
Northeast Structural Genomics Consortium (Nesg) Target
Hr4710b
Length = 91
Score = 54.7 bits (130), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 24/47 (51%), Positives = 30/47 (63%), Gaps = 1/47 (2%)
Query: 164 QSSCCSICLQDIIVGELARSLPHCHHTFHLACVDKWLIRHGSCPVCR 210
Q CC IC + + G++A LP CHH FH CV WL + G+CPVCR
Sbjct: 39 QEMCCPICCSEYVKGDVATELP-CHHYFHKPCVSIWLQKSGTCPVCR 84
>pdb|1IYM|A Chain A, Ring-H2 Finger Domain Of El5
Length = 55
Score = 54.7 bits (130), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 24/46 (52%), Positives = 30/46 (65%)
Query: 168 CSICLQDIIVGELARSLPHCHHTFHLACVDKWLIRHGSCPVCRRDV 213
C++CL ++ GE AR LP C H FH CVD WL H +CP+CR V
Sbjct: 8 CAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTV 53
>pdb|2ECT|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
Finger) Domain Of Ring Finger Protein 126
Length = 78
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 31/46 (67%), Gaps = 1/46 (2%)
Query: 168 CSICLQDIIVGELARSLPHCHHTFHLACVDKWLIRHGSCPVCRRDV 213
C +C +D +GE R LP C+H FH +C+ WL +H SCPVCR+ +
Sbjct: 18 CPVCKEDYALGESVRQLP-CNHLFHDSCIVPWLEQHDSCPVCRKSL 62
>pdb|2KIZ|A Chain A, Solution Structure Of Arkadia Ring-H2 Finger Domain
Length = 69
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/46 (52%), Positives = 30/46 (65%), Gaps = 1/46 (2%)
Query: 168 CSICLQDIIVGELARSLPHCHHTFHLACVDKWLIRHGSCPVCRRDV 213
C+ICL + GE R LP C H FH CVD+WLI + CP+CR D+
Sbjct: 17 CTICLSILEEGEDVRRLP-CMHLFHQVCVDQWLITNKKCPICRVDI 61
>pdb|1X4J|A Chain A, Solution Structure Of Ring Finger In Ring Finger Protein
38
Length = 75
Score = 51.2 bits (121), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 40/71 (56%), Gaps = 2/71 (2%)
Query: 142 GLTGESLKKLPCHVILDEIKPTQSSCCSICLQDIIVGELARSLPHCHHTFHLACVDKWLI 201
G +G S +LP + ++ + C +C+ D +L R LP C+H FH CVDKWL
Sbjct: 1 GSSGSS-GQLPSYRFNPNNHQSEQTLCVVCMCDFESRQLLRVLP-CNHEFHAKCVDKWLK 58
Query: 202 RHGSCPVCRRD 212
+ +CP+CR D
Sbjct: 59 ANRTCPICRAD 69
>pdb|4AYC|B Chain B, Rnf8 Ring Domain Structure
Length = 138
Score = 37.4 bits (85), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 20/28 (71%)
Query: 186 HCHHTFHLACVDKWLIRHGSCPVCRRDV 213
+C H+F C+++W+ R CP+CR+D+
Sbjct: 70 NCAHSFCSYCINEWMKRKIECPICRKDI 97
>pdb|4AYC|A Chain A, Rnf8 Ring Domain Structure
Length = 138
Score = 37.4 bits (85), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 20/28 (71%)
Query: 186 HCHHTFHLACVDKWLIRHGSCPVCRRDV 213
+C H+F C+++W+ R CP+CR+D+
Sbjct: 70 NCAHSFCSYCINEWMKRKIECPICRKDI 97
>pdb|4EPO|C Chain C, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|G Chain G, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|H Chain H, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|K Chain K, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|L Chain L, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 149
Score = 37.0 bits (84), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 20/28 (71%)
Query: 186 HCHHTFHLACVDKWLIRHGSCPVCRRDV 213
+C H+F C+++W+ R CP+CR+D+
Sbjct: 81 NCAHSFCSYCINEWMKRKIECPICRKDI 108
>pdb|2ECN|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 141
Length = 70
Score = 36.6 bits (83), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 24/43 (55%), Gaps = 5/43 (11%)
Query: 168 CSICLQDIIVGELARSLPHCHHTFHLACVDKWLIRHGSCPVCR 210
C IC+ G LP C H+F C+DKW RH +CP+CR
Sbjct: 18 CCICMD----GRADLILP-CAHSFCQKCIDKWSDRHRNCPICR 55
>pdb|1CHC|A Chain A, Structure Of The C3hc4 Domain By 1h-Nuclear Magnetic
Resonance Spectroscopy; A New Structural Class Of Zinc-
Finger
Length = 68
Score = 34.7 bits (78), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
Query: 168 CSICLQDIIVGELARSLPHCHHTFHLACVDKWLIRHGSCPVCRRDV 213
C ICL+D + +LP C H F C+ +W+ ++ +CP+C+ V
Sbjct: 8 CPICLED--PSNYSMALP-CLHAFCYVCITRWIRQNPTCPLCKVPV 50
>pdb|2EP4|A Chain A, Solution Structure Of Ring Finger From Human Ring Finger
Protein 24
Length = 74
Score = 33.5 bits (75), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Query: 168 CSICLQDIIVGELARSLPHCHHTFHLACVDKWLIRHGSCPVCRRDV 213
C++CL+D + P C H FH C+ KWL CP+C V
Sbjct: 18 CAVCLEDFKPRDELGICP-CKHAFHRKCLIKWLEVRKVCPLCNMPV 62
>pdb|2ECL|A Chain A, Solution Structure Of The Ring Domain Of The Human
Ring-Box Protein 2
Length = 81
Score = 32.0 bits (71), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 19/26 (73%)
Query: 187 CHHTFHLACVDKWLIRHGSCPVCRRD 212
C+H+FH C+ W+ ++ CP+C++D
Sbjct: 48 CNHSFHNCCMSLWVKQNNRCPLCQQD 73
>pdb|2ECM|A Chain A, Solution Structure Of The Ring Domain Of The Ring Finger
And Chy Zinc Finger Domain-Containing Protein 1 From Mus
Musculus
Length = 55
Score = 30.8 bits (68), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 23/47 (48%)
Query: 163 TQSSCCSICLQDIIVGELARSLPHCHHTFHLACVDKWLIRHGSCPVC 209
+ SS C ICL+DI + + C H H C ++ L CP+C
Sbjct: 3 SGSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLC 49
>pdb|2CT2|A Chain A, Solution Structure Of The Ring Domain Of The Tripartite
Motif Protein 32
Length = 88
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 3/47 (6%)
Query: 168 CSICLQDIIVGELARSLPHCHHTFHLACVDKWL---IRHGSCPVCRR 211
C IC++ +L L HC HT C++K L I CP C +
Sbjct: 18 CPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSK 64
>pdb|4A0K|B Chain B, Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 117
Score = 29.3 bits (64), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 187 CHHTFHLACVDKWLIRHGSCPVCRRD 212
C+H FH C+ +WL CP+ R+
Sbjct: 84 CNHAFHFHCISRWLKTRQVCPLDNRE 109
>pdb|1U6G|B Chain B, Crystal Structure Of The Cand1-Cul1-Roc1 Complex
pdb|2HYE|D Chain D, Crystal Structure Of The Ddb1-cul4a-rbx1-sv5v Complex
Length = 108
Score = 29.3 bits (64), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 187 CHHTFHLACVDKWLIRHGSCPVCRRD 212
C+H FH C+ +WL CP+ R+
Sbjct: 75 CNHAFHFHCISRWLKTRQVCPLDNRE 100
>pdb|3DPL|R Chain R, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation.
pdb|3RTR|B Chain B, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|D Chain D, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|F Chain F, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|H Chain H, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|4F52|B Chain B, Structure Of A Glomulin-Rbx1-Cul1 Complex
pdb|4F52|D Chain D, Structure Of A Glomulin-Rbx1-Cul1 Complex
Length = 106
Score = 29.3 bits (64), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 187 CHHTFHLACVDKWLIRHGSCPVCRRD 212
C+H FH C+ +WL CP+ R+
Sbjct: 73 CNHAFHFHCISRWLKTRQVCPLDNRE 98
>pdb|2JRJ|A Chain A, Solution Structure Of The Human Pirh2 Ring-H2 Domain.
Northeast Structural Genomics Consortium Target Ht2b
Length = 52
Score = 29.3 bits (64), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 20/42 (47%)
Query: 168 CSICLQDIIVGELARSLPHCHHTFHLACVDKWLIRHGSCPVC 209
C ICL+DI + + C H H C ++ L CP+C
Sbjct: 8 CPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLC 49
>pdb|2LGV|A Chain A, Rbx1
Length = 100
Score = 28.9 bits (63), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 187 CHHTFHLACVDKWLIRHGSCPVCRRD 212
C+H FH C+ +WL CP+ R+
Sbjct: 67 CNHAFHFHCISRWLKTRQVCPLDNRE 92
>pdb|3DQV|R Chain R, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation
pdb|3DQV|Y Chain Y, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation
Length = 106
Score = 28.9 bits (63), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 187 CHHTFHLACVDKWLIRHGSCPVCRRD 212
C+H FH C+ +WL CP+ R+
Sbjct: 73 CNHAFHFHCISRWLKTRQVCPLDNRE 98
>pdb|4A0C|D Chain D, Structure Of The Cand1-Cul4b-Rbx1 Complex
pdb|4A0C|F Chain F, Structure Of The Cand1-Cul4b-Rbx1 Complex
pdb|4A0L|F Chain F, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|I Chain I, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 98
Score = 28.9 bits (63), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 187 CHHTFHLACVDKWLIRHGSCPVCRRD 212
C+H FH C+ +WL CP+ R+
Sbjct: 65 CNHAFHFHCISRWLKTRQVCPLDNRE 90
>pdb|2Y43|A Chain A, Rad18 Ubiquitin Ligase Ring Domain Structure
pdb|2Y43|B Chain B, Rad18 Ubiquitin Ligase Ring Domain Structure
Length = 99
Score = 28.9 bits (63), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 19/42 (45%), Gaps = 3/42 (7%)
Query: 168 CSICLQDIIVGELARSLPHCHHTFHLACVDKWLIRHGSCPVC 209
C IC + +A +P C H + C+ K+L CP C
Sbjct: 25 CGICFEYF---NIAMIIPQCSHNYCSLCIRKFLSYKTQCPTC 63
>pdb|1LDJ|B Chain B, Structure Of The Cul1-rbx1-skp1-f Boxskp2 Scf Ubiquitin
Ligase Complex
pdb|1LDK|C Chain C, Structure Of The Cul1-Rbx1-Skp1-F Boxskp2 Scf Ubiquitin
Ligase Complex
Length = 90
Score = 28.5 bits (62), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 187 CHHTFHLACVDKWLIRHGSCPVCRRD 212
C+H FH C+ +WL CP+ R+
Sbjct: 57 CNHAFHFHCISRWLKTRQVCPLDNRE 82
>pdb|3F6Y|A Chain A, Conformational Closure Of The Catalytic Site Of Human Cd38
Induced By Calcium
Length = 262
Score = 28.1 bits (61), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 25/118 (21%), Positives = 44/118 (37%), Gaps = 33/118 (27%)
Query: 122 VRIASMSYDVNDTDCRALSRGLTGESLKKLPCHVILDEIKP-----TQSSCCS------- 169
V+ + ++ DC+++ G + K PC + ++ +P TQ+ C+
Sbjct: 30 VKYTEIHPEMRHVDCQSVWDAFKGAFISKHPCDITEEDYQPLMKLGTQTVPCNKILLWSR 89
Query: 170 ---------------ICLQDIIVGELARSLPHCHHTFHLACVDKWLIRHGSCPVCRRD 212
L+D ++G LA L C D I + SCP R+D
Sbjct: 90 IKDLAHQFTQVQRDMFTLEDTLLGYLADDLTWCGE------FDTSKINYQSCPDWRKD 141
>pdb|3RAJ|A Chain A, Crystal Structure Of Human Cd38 In Complex With The Fab
Fragment Of Antibody Hb7
Length = 257
Score = 27.7 bits (60), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 25/118 (21%), Positives = 44/118 (37%), Gaps = 33/118 (27%)
Query: 122 VRIASMSYDVNDTDCRALSRGLTGESLKKLPCHVILDEIKP-----TQSSCCS------- 169
V+ + ++ DC+++ G + K PC + ++ +P TQ+ C+
Sbjct: 25 VKYTEIHPEMRHVDCQSVWDAFKGAFISKHPCDITEEDYQPLMKLGTQTVPCNKILLWSR 84
Query: 170 ---------------ICLQDIIVGELARSLPHCHHTFHLACVDKWLIRHGSCPVCRRD 212
L+D ++G LA L C D I + SCP R+D
Sbjct: 85 IKDLAHQFTQVQRDMFTLEDTLLGYLADDLTWCGE------FDTSKINYQSCPDWRKD 136
>pdb|2O3S|A Chain A, Structural Basis For Formation And Hydrolysis Of Calcium
Messenger Cyclic Adp-Ribose By Human Cd38
pdb|2O3S|B Chain B, Structural Basis For Formation And Hydrolysis Of Calcium
Messenger Cyclic Adp-Ribose By Human Cd38
Length = 262
Score = 27.7 bits (60), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 25/118 (21%), Positives = 44/118 (37%), Gaps = 33/118 (27%)
Query: 122 VRIASMSYDVNDTDCRALSRGLTGESLKKLPCHVILDEIKP-----TQSSCCS------- 169
V+ + ++ DC+++ G + K PC + ++ +P TQ+ C+
Sbjct: 30 VKYTEIHPEMRHVDCQSVWDAFKGAFISKHPCDITEEDYQPLMKLGTQTVPCNKILLWSR 89
Query: 170 ---------------ICLQDIIVGELARSLPHCHHTFHLACVDKWLIRHGSCPVCRRD 212
L+D ++G LA L C D I + SCP R+D
Sbjct: 90 IKDLAHQFTQVQRDMFTLEDTLLGYLADDLTWCGE------FDTSKINYQSCPDWRKD 141
>pdb|3ROK|A Chain A, Crystal Structure Of Human Cd38 In Complex With Compound
Cz-27
pdb|3ROK|B Chain B, Crystal Structure Of Human Cd38 In Complex With Compound
Cz-27
pdb|3ROM|A Chain A, Crystal Structure Of Human Cd38 In Complex With Compound
Cz-48
pdb|3ROM|B Chain B, Crystal Structure Of Human Cd38 In Complex With Compound
Cz-48
pdb|3ROQ|A Chain A, Crystal Structure Of Human Cd38 In Complex With Compound
Cz-46
pdb|3ROQ|B Chain B, Crystal Structure Of Human Cd38 In Complex With Compound
Cz-46
pdb|3ROP|A Chain A, Crystal Structure Of Human Cd38 In Complex With Compound
Cz-50b
pdb|3ROP|B Chain B, Crystal Structure Of Human Cd38 In Complex With Compound
Cz-50b
Length = 254
Score = 27.7 bits (60), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 25/118 (21%), Positives = 44/118 (37%), Gaps = 33/118 (27%)
Query: 122 VRIASMSYDVNDTDCRALSRGLTGESLKKLPCHVILDEIKP-----TQSSCCS------- 169
V+ + ++ DC+++ G + K PC + ++ +P TQ+ C+
Sbjct: 26 VKYTEIHPEMRHVDCQSVWDAFKGAFISKHPCDITEEDYQPLMKLGTQTVPCNKILLWSR 85
Query: 170 ---------------ICLQDIIVGELARSLPHCHHTFHLACVDKWLIRHGSCPVCRRD 212
L+D ++G LA L C D I + SCP R+D
Sbjct: 86 IKDLAHQFTQVQRDMFTLEDTLLGYLADDLTWCGE------FDTSKINYQSCPDWRKD 137
>pdb|2HCT|A Chain A, Acidic Residues At The Active Sites Of Cd38 And
Adp-Ribosyl Cyclase Determine Naapd Synthesis And
Hydrolysis Activities
pdb|2HCT|B Chain B, Acidic Residues At The Active Sites Of Cd38 And
Adp-Ribosyl Cyclase Determine Naapd Synthesis And
Hydrolysis Activities
Length = 262
Score = 27.7 bits (60), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 25/118 (21%), Positives = 44/118 (37%), Gaps = 33/118 (27%)
Query: 122 VRIASMSYDVNDTDCRALSRGLTGESLKKLPCHVILDEIKP-----TQSSCCS------- 169
V+ + ++ DC+++ G + K PC + ++ +P TQ+ C+
Sbjct: 30 VKYTEIHPEMRHVDCQSVWDAFKGAFISKHPCDITEEDYQPLMKLGTQTVPCNKILLWSR 89
Query: 170 ---------------ICLQDIIVGELARSLPHCHHTFHLACVDKWLIRHGSCPVCRRD 212
L+D ++G LA L C D I + SCP R+D
Sbjct: 90 IKDLAHQFTQVQRDMFTLEDTLLGYLADDLTWCGE------FDTSKINYQSCPDWRKD 141
>pdb|2I66|A Chain A, Structural Basis For The Mechanistic Understanding Human
Cd38 Controlled Multiple Catalysis
pdb|2I66|B Chain B, Structural Basis For The Mechanistic Understanding Human
Cd38 Controlled Multiple Catalysis
pdb|2I67|A Chain A, Structural Basis For The Mechanistic Understanding Human
Cd38 Controlled Multiple Catalysis
pdb|2I67|B Chain B, Structural Basis For The Mechanistic Understanding Human
Cd38 Controlled Multiple Catalysis
pdb|2PGJ|A Chain A, Catalysis Associated Conformational Changes Revealed By
Human Cd38 Complexed With A Non-Hydrolyzable Substrate
Analog
pdb|2PGJ|B Chain B, Catalysis Associated Conformational Changes Revealed By
Human Cd38 Complexed With A Non-Hydrolyzable Substrate
Analog
pdb|3DZF|A Chain A, Crystal Structure Of Human Cd38 Extracellular Domain
Complexed With A Covalent Intermediate,
Ara-F-Ribose-5'-Phosphate
pdb|3DZF|B Chain B, Crystal Structure Of Human Cd38 Extracellular Domain
Complexed With A Covalent Intermediate,
Ara-F-Ribose-5'-Phosphate
pdb|3DZF|C Chain C, Crystal Structure Of Human Cd38 Extracellular Domain
Complexed With A Covalent Intermediate,
Ara-F-Ribose-5'-Phosphate
pdb|3DZF|D Chain D, Crystal Structure Of Human Cd38 Extracellular Domain
Complexed With A Covalent Intermediate,
Ara-F-Ribose-5'-Phosphate
pdb|3DZF|E Chain E, Crystal Structure Of Human Cd38 Extracellular Domain
Complexed With A Covalent Intermediate,
Ara-F-Ribose-5'-Phosphate
pdb|3DZF|F Chain F, Crystal Structure Of Human Cd38 Extracellular Domain
Complexed With A Covalent Intermediate,
Ara-F-Ribose-5'-Phosphate
pdb|3DZG|A Chain A, Crystal Structure Of Human Cd38 Extracellular Domain,
Ara-F- Ribose-5'-PhosphateNICOTINAMIDE COMPLEX
pdb|3DZG|B Chain B, Crystal Structure Of Human Cd38 Extracellular Domain,
Ara-F- Ribose-5'-PhosphateNICOTINAMIDE COMPLEX
pdb|3DZH|A Chain A, Crystal Structure Of Human Cd38 Extracellular Domain, Gtp
Complex
pdb|3DZH|B Chain B, Crystal Structure Of Human Cd38 Extracellular Domain, Gtp
Complex
pdb|3DZI|A Chain A, Crystal Structure Of Human Cd38 Extracellular Domain,
Ribose-5'-phosphate Intermediate/gtp Complex
pdb|3DZI|B Chain B, Crystal Structure Of Human Cd38 Extracellular Domain,
Ribose-5'-phosphate Intermediate/gtp Complex
pdb|3DZK|A Chain A, Crystal Structure Of Human Cd38 Extracellular Domain, Nmn
Complex
pdb|3DZK|B Chain B, Crystal Structure Of Human Cd38 Extracellular Domain, Nmn
Complex
pdb|3I9M|A Chain A, Crystal Structure Of Human Cd38 Complexed With An Analog
Ara-2'f-Adpr
pdb|3I9M|B Chain B, Crystal Structure Of Human Cd38 Complexed With An Analog
Ara-2'f-Adpr
pdb|3I9N|A Chain A, Crystal Structure Of Human Cd38 Complexed With An Analog
Ribo-2'f-Adp Ribose
pdb|3I9N|B Chain B, Crystal Structure Of Human Cd38 Complexed With An Analog
Ribo-2'f-Adp Ribose
pdb|3U4H|A Chain A, Cd38 Structure-Based Inhibitor Design Using The N1-Cyclic
Inosine 5'- Diphosphate Ribose Template
pdb|3U4H|B Chain B, Cd38 Structure-Based Inhibitor Design Using The N1-Cyclic
Inosine 5'- Diphosphate Ribose Template
pdb|3U4I|A Chain A, Cd38 Structure-Based Inhibitor Design Using The N1-Cyclic
Inosine 5'- Diphosphate Ribose Template
pdb|3U4I|B Chain B, Cd38 Structure-Based Inhibitor Design Using The N1-Cyclic
Inosine 5'- Diphosphate Ribose Template
Length = 262
Score = 27.7 bits (60), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 25/118 (21%), Positives = 44/118 (37%), Gaps = 33/118 (27%)
Query: 122 VRIASMSYDVNDTDCRALSRGLTGESLKKLPCHVILDEIKP-----TQSSCCS------- 169
V+ + ++ DC+++ G + K PC + ++ +P TQ+ C+
Sbjct: 30 VKYTEIHPEMRHVDCQSVWDAFKGAFISKHPCDITEEDYQPLMKLGTQTVPCNKILLWSR 89
Query: 170 ---------------ICLQDIIVGELARSLPHCHHTFHLACVDKWLIRHGSCPVCRRD 212
L+D ++G LA L C D I + SCP R+D
Sbjct: 90 IKDLAHQFTQVQRDMFTLEDTLLGYLADDLTWCGE------FDTSKINYQSCPDWRKD 141
>pdb|2O3R|A Chain A, Structural Basis For Formation And Hydrolysis Of Calcium
Messenger Cyclic Adp-Ribose By Human Cd38
pdb|2O3R|B Chain B, Structural Basis For Formation And Hydrolysis Of Calcium
Messenger Cyclic Adp-Ribose By Human Cd38
Length = 262
Score = 27.7 bits (60), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 25/118 (21%), Positives = 44/118 (37%), Gaps = 33/118 (27%)
Query: 122 VRIASMSYDVNDTDCRALSRGLTGESLKKLPCHVILDEIKP-----TQSSCCS------- 169
V+ + ++ DC+++ G + K PC + ++ +P TQ+ C+
Sbjct: 30 VKYTEIHPEMRHVDCQSVWDAFKGAFISKHPCDITEEDYQPLMKLGTQTVPCNKILLWSR 89
Query: 170 ---------------ICLQDIIVGELARSLPHCHHTFHLACVDKWLIRHGSCPVCRRD 212
L+D ++G LA L C D I + SCP R+D
Sbjct: 90 IKDLAHQFTQVQRDMFTLEDTLLGYLADDLTWCGE------FDTSKINYQSCPDWRKD 141
>pdb|2I65|A Chain A, Structural Basis For The Mechanistic Understanding Human
Cd38 Controlled Multiple Catalysis
pdb|2I65|B Chain B, Structural Basis For The Mechanistic Understanding Human
Cd38 Controlled Multiple Catalysis
pdb|2O3Q|A Chain A, Structural Basis For Formation And Hydrolysis Of Calcium
Messenger Cyclic Adp-Ribose By Human Cd38
pdb|2O3Q|B Chain B, Structural Basis For Formation And Hydrolysis Of Calcium
Messenger Cyclic Adp-Ribose By Human Cd38
pdb|2O3T|A Chain A, Structural Basis For Formation And Hydrolysis Of Calcium
Messenger Cyclic Adp-Ribose By Human Cd38
pdb|2O3T|B Chain B, Structural Basis For Formation And Hydrolysis Of Calcium
Messenger Cyclic Adp-Ribose By Human Cd38
pdb|2O3U|A Chain A, Structural Basis For Formation And Hydrolysis Of Calcium
Messenger Cyclic Adp-Ribose By Human Cd38
pdb|2O3U|B Chain B, Structural Basis For Formation And Hydrolysis Of Calcium
Messenger Cyclic Adp-Ribose By Human Cd38
pdb|2PGL|A Chain A, Catalysis Associated Conformational Changes Revealed By
Human Cd38 Complexed With A Non-Hydrolyzable Substrate
Analog
pdb|2PGL|B Chain B, Catalysis Associated Conformational Changes Revealed By
Human Cd38 Complexed With A Non-Hydrolyzable Substrate
Analog
Length = 262
Score = 27.7 bits (60), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 25/118 (21%), Positives = 44/118 (37%), Gaps = 33/118 (27%)
Query: 122 VRIASMSYDVNDTDCRALSRGLTGESLKKLPCHVILDEIKP-----TQSSCCS------- 169
V+ + ++ DC+++ G + K PC + ++ +P TQ+ C+
Sbjct: 30 VKYTEIHPEMRHVDCQSVWDAFKGAFISKHPCDITEEDYQPLMKLGTQTVPCNKILLWSR 89
Query: 170 ---------------ICLQDIIVGELARSLPHCHHTFHLACVDKWLIRHGSCPVCRRD 212
L+D ++G LA L C D I + SCP R+D
Sbjct: 90 IKDLAHQFTQVQRDMFTLEDTLLGYLADDLTWCGE------FDTSKINYQSCPDWRKD 141
>pdb|2EA6|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 4
Length = 69
Score = 27.3 bits (59), Expect = 6.5, Method: Composition-based stats.
Identities = 14/57 (24%), Positives = 25/57 (43%), Gaps = 3/57 (5%)
Query: 160 IKPTQSSCCSICL---QDIIVGELARSLPHCHHTFHLACVDKWLIRHGSCPVCRRDV 213
++P+ + C IC+ +I+ C H F C+ L +CP CR+ +
Sbjct: 10 LRPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI 66
>pdb|3LRQ|A Chain A, Crystal Structure Of The U-Box Domain Of Human Ubiquitin-
Protein Ligase (E3), Northeast Structural Genomics
Consortium Target Hr4604d.
pdb|3LRQ|B Chain B, Crystal Structure Of The U-Box Domain Of Human Ubiquitin-
Protein Ligase (E3), Northeast Structural Genomics
Consortium Target Hr4604d.
pdb|3LRQ|C Chain C, Crystal Structure Of The U-Box Domain Of Human Ubiquitin-
Protein Ligase (E3), Northeast Structural Genomics
Consortium Target Hr4604d.
pdb|3LRQ|D Chain D, Crystal Structure Of The U-Box Domain Of Human Ubiquitin-
Protein Ligase (E3), Northeast Structural Genomics
Consortium Target Hr4604d
Length = 100
Score = 26.9 bits (58), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 181 ARSLPHCHHTFHLACVDKWLI-RHGSCPVCR 210
AR PHC +C+ +WL + CP CR
Sbjct: 35 ARLCPHCSKLCCFSCIRRWLTEQRAQCPHCR 65
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.138 0.448
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,021,761
Number of Sequences: 62578
Number of extensions: 165614
Number of successful extensions: 552
Number of sequences better than 100.0: 36
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 523
Number of HSP's gapped (non-prelim): 38
length of query: 213
length of database: 14,973,337
effective HSP length: 95
effective length of query: 118
effective length of database: 9,028,427
effective search space: 1065354386
effective search space used: 1065354386
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 49 (23.5 bits)