Query 028116
Match_columns 213
No_of_seqs 229 out of 1561
Neff 7.0
Searched_HMMs 29240
Date Mon Mar 25 10:17:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028116.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028116hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l0b_A E3 ubiquitin-protein li 99.8 5.4E-20 1.9E-24 133.6 6.7 78 135-213 9-87 (91)
2 1x4j_A Ring finger protein 38; 99.8 1.5E-19 5.3E-24 126.2 3.9 68 145-213 3-70 (75)
3 1iym_A EL5; ring-H2 finger, ub 99.7 1.2E-17 3.9E-22 109.6 4.0 51 163-213 3-53 (55)
4 2kiz_A E3 ubiquitin-protein li 99.6 1.4E-16 4.9E-21 109.1 5.1 50 163-213 12-61 (69)
5 2ep4_A Ring finger protein 24; 99.6 1.6E-16 5.6E-21 110.2 4.4 50 163-213 13-62 (74)
6 2ecl_A Ring-box protein 2; RNF 99.6 9E-17 3.1E-21 114.2 2.8 50 164-213 14-74 (81)
7 2ect_A Ring finger protein 126 99.6 3.3E-16 1.1E-20 109.8 4.4 50 163-213 13-62 (78)
8 2ecm_A Ring finger and CHY zin 99.6 1.5E-15 5.2E-20 99.2 4.6 50 163-213 3-53 (55)
9 1v87_A Deltex protein 2; ring- 99.6 1.9E-15 6.4E-20 113.2 4.4 50 163-213 23-92 (114)
10 3dpl_R Ring-box protein 1; ubi 99.5 4E-15 1.4E-19 111.2 4.9 49 163-212 35-98 (106)
11 2ea6_A Ring finger protein 4; 99.5 4.2E-15 1.4E-19 101.1 4.2 50 163-213 13-66 (69)
12 3ng2_A RNF4, snurf, ring finge 99.5 2.8E-15 9.7E-20 102.8 3.3 50 163-213 8-61 (71)
13 2xeu_A Ring finger protein 4; 99.5 5.2E-15 1.8E-19 99.2 3.3 49 164-213 2-54 (64)
14 2d8s_A Cellular modulator of i 99.5 1.7E-14 5.9E-19 102.5 4.1 49 163-213 13-68 (80)
15 1chc_A Equine herpes virus-1 r 99.5 2E-14 6.9E-19 97.9 4.3 48 163-213 3-50 (68)
16 4a0k_B E3 ubiquitin-protein li 99.5 3.6E-15 1.2E-19 113.3 -0.6 50 163-212 46-109 (117)
17 2d8t_A Dactylidin, ring finger 99.5 2.6E-14 8.8E-19 98.5 3.5 47 163-213 13-59 (71)
18 2ecn_A Ring finger protein 141 99.4 1.6E-14 5.5E-19 99.0 1.7 46 163-213 13-58 (70)
19 2ct2_A Tripartite motif protei 99.4 6.7E-14 2.3E-18 99.6 4.5 50 163-213 13-66 (88)
20 2djb_A Polycomb group ring fin 99.4 7.9E-14 2.7E-18 96.3 4.2 47 163-213 13-60 (72)
21 2csy_A Zinc finger protein 183 99.4 1.7E-13 5.9E-18 96.6 5.1 47 163-213 13-59 (81)
22 4ayc_A E3 ubiquitin-protein li 99.4 7E-14 2.4E-18 108.5 2.8 45 165-213 53-97 (138)
23 2ysl_A Tripartite motif-contai 99.4 2.9E-13 1E-17 93.2 4.2 47 163-213 18-67 (73)
24 2yur_A Retinoblastoma-binding 99.4 2.8E-13 9.7E-18 94.1 4.0 47 163-212 13-61 (74)
25 2ecy_A TNF receptor-associated 99.4 2.9E-13 1E-17 91.8 3.6 47 163-213 13-60 (66)
26 4ap4_A E3 ubiquitin ligase RNF 99.3 3.7E-13 1.3E-17 102.2 3.2 50 163-213 5-58 (133)
27 4ap4_A E3 ubiquitin ligase RNF 99.3 8E-13 2.7E-17 100.3 4.9 50 163-213 70-123 (133)
28 3lrq_A E3 ubiquitin-protein li 99.3 4.4E-13 1.5E-17 98.5 3.1 47 163-213 20-68 (100)
29 1t1h_A Gspef-atpub14, armadill 99.3 8.2E-13 2.8E-17 92.3 4.2 47 163-213 6-53 (78)
30 2ecw_A Tripartite motif-contai 99.3 1.2E-12 4.2E-17 92.1 4.7 47 163-213 17-69 (85)
31 2ecv_A Tripartite motif-contai 99.3 1.3E-12 4.4E-17 92.0 4.2 47 163-213 17-69 (85)
32 2egp_A Tripartite motif-contai 99.3 3.7E-13 1.3E-17 93.9 1.0 47 163-213 10-63 (79)
33 2y43_A E3 ubiquitin-protein li 99.3 1.4E-12 4.7E-17 95.3 3.9 46 164-213 21-67 (99)
34 2ct0_A Non-SMC element 1 homol 99.3 1.9E-12 6.5E-17 90.6 4.3 47 163-212 13-61 (74)
35 2ysj_A Tripartite motif-contai 99.3 2.5E-12 8.6E-17 86.2 4.4 43 163-209 18-63 (63)
36 1g25_A CDK-activating kinase a 99.3 2E-12 6.7E-17 87.4 3.9 49 164-213 2-53 (65)
37 2ckl_A Polycomb group ring fin 99.3 1.6E-12 5.4E-17 96.5 3.7 47 163-213 13-60 (108)
38 3ztg_A E3 ubiquitin-protein li 99.2 3.6E-12 1.2E-16 91.7 4.2 48 163-213 11-60 (92)
39 3fl2_A E3 ubiquitin-protein li 99.2 3.1E-12 1.1E-16 97.2 4.1 46 164-213 51-97 (124)
40 2ecj_A Tripartite motif-contai 99.2 3.8E-12 1.3E-16 83.6 3.4 43 163-209 13-58 (58)
41 2ckl_B Ubiquitin ligase protei 99.2 7.7E-12 2.6E-16 99.4 5.7 47 164-213 53-100 (165)
42 1jm7_A BRCA1, breast cancer ty 99.2 6.8E-12 2.3E-16 93.1 3.8 46 164-213 20-68 (112)
43 3hct_A TNF receptor-associated 99.2 9.7E-12 3.3E-16 93.8 3.2 47 163-213 16-63 (118)
44 1z6u_A NP95-like ring finger p 99.2 1.6E-11 5.4E-16 96.8 4.1 46 164-213 77-123 (150)
45 2vje_A E3 ubiquitin-protein li 99.2 1.6E-11 5.4E-16 83.3 3.4 47 163-213 6-55 (64)
46 3l11_A E3 ubiquitin-protein li 99.1 6.1E-12 2.1E-16 94.2 1.0 47 163-213 13-60 (115)
47 1rmd_A RAG1; V(D)J recombinati 99.1 2.3E-11 7.8E-16 91.2 3.9 46 164-213 22-68 (116)
48 2vje_B MDM4 protein; proto-onc 99.1 3.1E-11 1.1E-15 81.5 3.1 49 163-213 5-54 (63)
49 2y1n_A E3 ubiquitin-protein li 99.1 5.3E-11 1.8E-15 106.8 4.7 46 164-213 331-377 (389)
50 2kr4_A Ubiquitin conjugation f 99.1 7.6E-11 2.6E-15 84.2 4.4 47 163-213 12-58 (85)
51 3k1l_B Fancl; UBC, ring, RWD, 99.1 3.5E-11 1.2E-15 106.0 2.5 51 163-213 306-371 (381)
52 1bor_A Transcription factor PM 99.1 3.8E-11 1.3E-15 79.1 1.8 44 163-213 4-47 (56)
53 2kre_A Ubiquitin conjugation f 99.1 8.5E-11 2.9E-15 86.6 3.8 47 163-213 27-73 (100)
54 3knv_A TNF receptor-associated 99.0 5.3E-11 1.8E-15 92.8 2.0 46 163-212 29-75 (141)
55 1wgm_A Ubiquitin conjugation f 99.0 1.4E-10 4.8E-15 85.1 4.1 47 163-213 20-67 (98)
56 1e4u_A Transcriptional repress 99.0 1.8E-10 6.3E-15 81.1 3.7 50 163-213 9-60 (78)
57 1jm7_B BARD1, BRCA1-associated 99.0 5.6E-11 1.9E-15 89.4 1.0 44 164-213 21-65 (117)
58 4ic3_A E3 ubiquitin-protein li 99.0 7.6E-11 2.6E-15 81.9 1.2 42 164-213 23-65 (74)
59 1vyx_A ORF K3, K3RING; zinc-bi 98.9 8.7E-10 3E-14 73.9 3.7 47 163-213 4-57 (60)
60 3hcs_A TNF receptor-associated 98.9 6.8E-10 2.3E-14 88.4 3.2 47 163-213 16-63 (170)
61 2c2l_A CHIP, carboxy terminus 98.9 1E-09 3.5E-14 92.8 4.4 47 163-213 206-253 (281)
62 2yu4_A E3 SUMO-protein ligase 98.9 9.8E-10 3.4E-14 79.7 3.3 47 163-212 5-59 (94)
63 2ea5_A Cell growth regulator w 98.8 2.3E-09 7.8E-14 73.4 4.3 43 163-213 13-56 (68)
64 2ecg_A Baculoviral IAP repeat- 98.8 1.2E-09 4.3E-14 75.8 2.7 42 164-213 24-66 (75)
65 1wim_A KIAA0161 protein; ring 98.7 4.4E-09 1.5E-13 75.9 3.3 48 164-212 4-61 (94)
66 2yho_A E3 ubiquitin-protein li 98.7 2E-09 7E-14 75.8 1.2 42 164-213 17-59 (79)
67 2f42_A STIP1 homology and U-bo 98.7 8.6E-09 2.9E-13 83.5 4.1 47 163-213 104-151 (179)
68 2bay_A PRE-mRNA splicing facto 98.6 2.5E-08 8.6E-13 66.8 2.8 45 166-213 4-48 (61)
69 3t6p_A Baculoviral IAP repeat- 98.6 1.3E-08 4.6E-13 90.1 1.6 43 163-213 293-336 (345)
70 3htk_C E3 SUMO-protein ligase 98.4 1E-07 3.5E-12 81.2 2.5 47 163-212 179-229 (267)
71 3vk6_A E3 ubiquitin-protein li 98.4 2.6E-07 8.8E-12 67.5 3.9 44 167-213 3-47 (101)
72 3nw0_A Non-structural maintena 98.1 2.4E-06 8.2E-11 71.9 4.3 46 164-212 179-226 (238)
73 2lri_C Autoimmune regulator; Z 95.9 0.0047 1.6E-07 41.6 2.7 46 163-212 10-59 (66)
74 2ko5_A Ring finger protein Z; 95.5 0.0033 1.1E-07 45.2 0.9 45 164-213 27-71 (99)
75 2jun_A Midline-1; B-BOX, TRIM, 95.4 0.0082 2.8E-07 42.9 2.6 36 164-200 2-38 (101)
76 1we9_A PHD finger family prote 95.3 0.0037 1.3E-07 41.4 0.5 49 163-211 4-57 (64)
77 1wil_A KIAA1045 protein; ring 94.8 0.026 8.9E-07 39.7 3.6 35 163-199 13-47 (89)
78 2l5u_A Chromodomain-helicase-D 93.4 0.038 1.3E-06 36.3 2.2 46 163-212 9-58 (61)
79 1f62_A Transcription factor WS 92.0 0.064 2.2E-06 33.6 1.7 45 167-212 2-50 (51)
80 2kgg_A Histone demethylase jar 91.9 0.052 1.8E-06 34.4 1.2 45 166-210 3-52 (52)
81 2vpb_A Hpygo1, pygopus homolog 91.8 0.12 4E-06 34.5 2.9 49 163-211 6-65 (65)
82 1mm2_A MI2-beta; PHD, zinc fin 91.8 0.036 1.2E-06 36.4 0.3 46 163-212 7-56 (61)
83 2yql_A PHD finger protein 21A; 91.6 0.028 9.5E-07 36.2 -0.4 45 163-211 7-55 (56)
84 1wep_A PHF8; structural genomi 91.1 0.13 4.4E-06 35.4 2.6 48 164-212 11-63 (79)
85 2k16_A Transcription initiatio 90.9 0.085 2.9E-06 35.8 1.5 48 163-211 16-67 (75)
86 1weu_A Inhibitor of growth fam 90.4 0.15 5.1E-06 36.3 2.5 44 164-212 35-85 (91)
87 1fp0_A KAP-1 corepressor; PHD 90.0 0.13 4.4E-06 36.5 1.8 46 162-211 22-71 (88)
88 2cs3_A Protein C14ORF4, MY039 89.9 0.26 8.9E-06 34.4 3.2 41 163-203 13-53 (93)
89 2puy_A PHD finger protein 21A; 89.7 0.055 1.9E-06 35.3 -0.3 45 163-211 3-51 (60)
90 1xwh_A Autoimmune regulator; P 89.6 0.051 1.8E-06 36.2 -0.5 45 163-211 6-54 (66)
91 1wem_A Death associated transc 89.5 0.14 4.7E-06 34.9 1.6 46 164-211 15-69 (76)
92 2lv9_A Histone-lysine N-methyl 88.3 0.19 6.5E-06 36.1 1.8 45 165-211 28-75 (98)
93 2lbm_A Transcriptional regulat 87.8 0.6 2.1E-05 35.9 4.4 46 162-211 60-116 (142)
94 1wen_A Inhibitor of growth fam 87.8 0.34 1.2E-05 32.7 2.7 44 164-212 15-65 (71)
95 2ysm_A Myeloid/lymphoid or mix 86.6 0.2 6.8E-06 36.5 1.0 47 163-210 5-55 (111)
96 2xb1_A Pygopus homolog 2, B-ce 86.5 0.37 1.3E-05 35.0 2.4 47 165-211 3-60 (105)
97 3v43_A Histone acetyltransfera 86.4 0.2 6.7E-06 36.7 0.9 48 165-212 61-112 (112)
98 1wew_A DNA-binding family prot 86.3 0.19 6.4E-06 34.5 0.7 47 164-211 15-71 (78)
99 1wee_A PHD finger family prote 86.1 0.11 3.6E-06 35.1 -0.7 48 163-211 14-65 (72)
100 2e6r_A Jumonji/ARID domain-con 85.5 0.091 3.1E-06 37.4 -1.3 48 163-211 14-65 (92)
101 3o70_A PHD finger protein 13; 85.2 0.19 6.5E-06 33.7 0.3 48 163-212 17-67 (68)
102 4gne_A Histone-lysine N-methyl 85.1 0.61 2.1E-05 34.1 3.0 44 162-210 12-60 (107)
103 3m62_A Ubiquitin conjugation f 84.7 0.66 2.2E-05 45.9 3.9 47 163-213 889-936 (968)
104 2ku3_A Bromodomain-containing 84.3 0.36 1.2E-05 32.6 1.4 49 163-211 14-65 (71)
105 3v43_A Histone acetyltransfera 84.0 1.4 4.7E-05 32.1 4.5 33 164-197 4-42 (112)
106 3shb_A E3 ubiquitin-protein li 82.5 0.24 8.3E-06 34.1 -0.1 45 167-212 28-77 (77)
107 2l43_A N-teminal domain from h 82.0 0.35 1.2E-05 34.0 0.6 49 163-211 23-74 (88)
108 3ql9_A Transcriptional regulat 82.0 1.7 5.8E-05 32.8 4.4 45 163-211 55-110 (129)
109 2e6s_A E3 ubiquitin-protein li 79.6 0.49 1.7E-05 32.5 0.6 46 166-212 27-77 (77)
110 3asl_A E3 ubiquitin-protein li 79.2 0.47 1.6E-05 31.9 0.4 45 167-212 20-69 (70)
111 2kwj_A Zinc finger protein DPF 79.1 0.54 1.8E-05 34.5 0.8 33 166-199 2-41 (114)
112 2yt5_A Metal-response element- 79.1 1.1 3.8E-05 29.2 2.3 49 163-211 4-60 (66)
113 3c6w_A P28ING5, inhibitor of g 78.4 0.46 1.6E-05 30.8 0.2 43 165-212 9-58 (59)
114 2vnf_A ING 4, P29ING4, inhibit 77.8 0.46 1.6E-05 30.9 0.1 43 165-212 10-59 (60)
115 1z2q_A LM5-1; membrane protein 77.6 1.6 5.5E-05 30.1 2.9 37 163-199 19-55 (84)
116 2g6q_A Inhibitor of growth pro 77.4 0.51 1.8E-05 30.9 0.2 43 165-212 11-60 (62)
117 2yw8_A RUN and FYVE domain-con 76.4 1.8 6.1E-05 29.7 2.8 36 163-198 17-52 (82)
118 1vfy_A Phosphatidylinositol-3- 75.9 2 6.8E-05 28.8 2.9 34 165-198 11-44 (73)
119 3ask_A E3 ubiquitin-protein li 75.8 0.73 2.5E-05 38.1 0.7 46 166-212 175-225 (226)
120 1x4u_A Zinc finger, FYVE domai 74.8 2 7E-05 29.5 2.8 36 163-198 12-47 (84)
121 2rsd_A E3 SUMO-protein ligase 74.8 0.37 1.3E-05 32.0 -1.1 45 166-211 11-64 (68)
122 3t7l_A Zinc finger FYVE domain 74.7 1.7 5.9E-05 30.4 2.4 36 164-199 19-54 (90)
123 1joc_A EEA1, early endosomal a 73.6 1.8 6.1E-05 32.3 2.4 36 164-199 68-103 (125)
124 3kqi_A GRC5, PHD finger protei 73.4 0.8 2.8E-05 30.9 0.3 47 165-211 9-60 (75)
125 1z60_A TFIIH basal transcripti 73.3 1.9 6.6E-05 28.0 2.2 43 166-209 16-58 (59)
126 2jmi_A Protein YNG1, ING1 homo 72.3 0.94 3.2E-05 32.1 0.5 44 163-211 24-75 (90)
127 1dvp_A HRS, hepatocyte growth 71.3 1.9 6.6E-05 34.9 2.2 36 164-199 160-195 (220)
128 1y02_A CARP2, FYVE-ring finger 70.7 0.66 2.2E-05 34.6 -0.7 47 163-209 17-63 (120)
129 3i2d_A E3 SUMO-protein ligase 70.6 4 0.00014 36.1 4.2 46 165-213 249-298 (371)
130 2jmo_A Parkin; IBR, E3 ligase, 70.6 0.62 2.1E-05 32.0 -0.8 35 165-199 25-68 (80)
131 3zyq_A Hepatocyte growth facto 70.5 2.2 7.6E-05 34.8 2.5 36 164-199 163-198 (226)
132 4fo9_A E3 SUMO-protein ligase 70.4 4.1 0.00014 35.9 4.2 45 166-213 216-264 (360)
133 1wfk_A Zinc finger, FYVE domai 70.3 2.9 0.0001 29.1 2.7 36 163-198 7-42 (88)
134 1zbd_B Rabphilin-3A; G protein 69.7 2.5 8.7E-05 31.9 2.4 35 163-197 53-88 (134)
135 2gmg_A Hypothetical protein PF 68.6 0.81 2.8E-05 33.3 -0.5 22 186-212 72-93 (105)
136 2lbg_A Major prion protein; co 68.2 2.5 8.6E-05 23.0 1.5 14 34-47 9-22 (27)
137 1zfo_A LAsp-1; LIM domain, zin 67.3 2.9 0.0001 23.2 1.8 29 165-196 3-31 (31)
138 2ysm_A Myeloid/lymphoid or mix 67.2 0.84 2.9E-05 33.0 -0.7 45 166-211 55-103 (111)
139 1wev_A Riken cDNA 1110020M19; 66.3 0.85 2.9E-05 31.9 -0.8 49 163-211 14-71 (88)
140 2cu8_A Cysteine-rich protein 2 65.9 3.8 0.00013 26.9 2.5 28 165-195 9-36 (76)
141 1iml_A CRIP, cysteine rich int 65.9 3.3 0.00011 27.2 2.2 43 164-211 26-69 (76)
142 3o7a_A PHD finger protein 13 v 65.8 1.3 4.4E-05 27.7 0.0 42 169-211 7-51 (52)
143 2jne_A Hypothetical protein YF 64.8 1.8 6.2E-05 31.1 0.7 39 166-213 33-71 (101)
144 1weo_A Cellulose synthase, cat 63.1 16 0.00056 25.7 5.3 49 164-212 15-67 (93)
145 1x4i_A Inhibitor of growth pro 62.2 3.4 0.00012 27.5 1.7 41 166-211 7-54 (70)
146 2ct7_A Ring finger protein 31; 60.1 1.1 3.9E-05 31.0 -1.1 37 167-203 27-65 (86)
147 2dj7_A Actin-binding LIM prote 60.0 6.7 0.00023 26.2 2.9 29 164-195 14-42 (80)
148 2kwj_A Zinc finger protein DPF 59.0 1.2 4.2E-05 32.5 -1.2 45 166-211 59-107 (114)
149 2co8_A NEDD9 interacting prote 58.6 7.1 0.00024 26.2 2.8 30 163-195 13-42 (82)
150 2ek0_A Stage V sporulation pro 57.1 3.8 0.00013 28.9 1.2 36 40-75 14-51 (90)
151 1x4k_A Skeletal muscle LIM-pro 56.6 8 0.00027 24.8 2.7 13 166-178 6-18 (72)
152 3f6q_B LIM and senescent cell 56.6 6.5 0.00022 25.1 2.3 31 164-196 10-40 (72)
153 1wyh_A SLIM 2, skeletal muscle 56.2 7.7 0.00026 24.9 2.6 12 166-177 6-17 (72)
154 3ldt_A Outer membrane protein, 54.2 2.7 9.3E-05 32.6 0.1 12 34-45 4-15 (169)
155 1g47_A Pinch protein; LIM doma 54.0 9.5 0.00033 24.8 2.8 30 164-195 10-39 (77)
156 1x63_A Skeletal muscle LIM-pro 53.1 11 0.00038 24.8 3.1 28 166-195 16-43 (82)
157 4ezc_A UREA transporter 1; mem 52.5 15 0.00053 32.5 4.6 44 23-72 246-292 (384)
158 2jrp_A Putative cytoplasmic pr 52.4 5.6 0.00019 27.5 1.4 13 166-178 3-15 (81)
159 3mpx_A FYVE, rhogef and PH dom 52.2 3 0.0001 36.7 0.0 37 164-200 374-410 (434)
160 1x4l_A Skeletal muscle LIM-pro 49.7 12 0.00042 24.0 2.8 12 166-177 6-17 (72)
161 1x61_A Thyroid receptor intera 49.6 14 0.00047 23.7 3.0 38 164-204 32-69 (72)
162 2d8v_A Zinc finger FYVE domain 49.5 11 0.00038 25.0 2.4 32 163-199 6-38 (67)
163 3kv5_D JMJC domain-containing 49.3 3.5 0.00012 37.7 -0.0 46 166-211 37-87 (488)
164 2k1k_A Ephrin type-A receptor 49.2 6.8 0.00023 23.1 1.2 9 36-44 12-20 (38)
165 3ldt_A Outer membrane protein, 49.0 2.8 9.6E-05 32.6 -0.6 14 34-47 8-21 (169)
166 2dar_A PDZ and LIM domain prot 48.7 16 0.00054 24.7 3.4 27 165-195 25-51 (90)
167 3a1b_A DNA (cytosine-5)-methyl 47.1 16 0.00055 28.4 3.5 36 163-201 77-113 (159)
168 2a20_A Regulating synaptic mem 46.5 1.1 3.8E-05 29.2 -2.7 48 163-211 7-59 (62)
169 2o35_A Hypothetical protein DU 45.3 8.5 0.00029 27.7 1.5 11 191-201 43-53 (105)
170 3fyb_A Protein of unknown func 45.0 8.6 0.00029 27.6 1.5 11 191-201 42-52 (104)
171 3pwf_A Rubrerythrin; non heme 43.5 9.5 0.00033 29.7 1.7 24 182-212 139-162 (170)
172 1x68_A FHL5 protein; four-and- 43.5 17 0.00058 23.6 2.8 27 166-195 6-35 (76)
173 2cor_A Pinch protein; LIM doma 42.7 21 0.0007 23.6 3.1 27 165-195 15-41 (79)
174 2l3k_A Rhombotin-2, linker, LI 42.1 14 0.0005 26.6 2.4 36 164-201 35-70 (123)
175 2d8x_A Protein pinch; LIM doma 41.8 15 0.0005 23.5 2.2 32 166-200 32-63 (70)
176 1yuz_A Nigerythrin; rubrythrin 41.5 10 0.00035 30.4 1.6 25 181-212 171-195 (202)
177 2d8y_A Eplin protein; LIM doma 41.4 20 0.0007 24.2 3.0 27 166-195 16-42 (91)
178 3heq_A Major prion protein; ce 41.4 3.9 0.00014 30.7 -0.8 10 38-47 29-38 (142)
179 2pv0_B DNA (cytosine-5)-methyl 41.2 18 0.00062 32.0 3.3 35 163-200 91-126 (386)
180 3arc_X Photosystem II PSBX pro 39.5 14 0.00048 21.9 1.6 19 34-52 16-34 (39)
181 1nyp_A Pinch protein; LIM doma 38.0 16 0.00053 23.0 1.8 26 166-195 6-31 (66)
182 2zet_C Melanophilin; complex, 37.7 17 0.00058 27.9 2.2 34 163-196 66-100 (153)
183 3bz1_X Photosystem II PSBX pro 37.5 21 0.00071 22.3 2.2 23 34-56 26-48 (50)
184 2nq2_A Hypothetical ABC transp 37.0 74 0.0025 27.2 6.5 19 11-29 59-77 (337)
185 1lko_A Rubrerythrin all-iron(I 36.7 11 0.00037 29.8 1.0 13 92-104 82-94 (191)
186 1tpx_A Prion protein, major pr 36.6 3.7 0.00012 30.6 -1.7 12 37-48 7-18 (121)
187 1wd2_A Ariadne-1 protein homol 35.8 7.4 0.00025 25.1 -0.1 38 165-202 6-47 (60)
188 2kxa_A Haemagglutinin HA2 chai 35.5 15 0.00052 20.2 1.2 7 39-45 4-10 (30)
189 3mjh_B Early endosome antigen 35.5 9.9 0.00034 21.8 0.4 15 165-179 5-19 (34)
190 2csz_A Synaptotagmin-like prot 35.4 13 0.00044 25.4 1.1 33 163-195 23-56 (76)
191 1rut_X Flinc4, fusion protein 34.9 22 0.00074 27.6 2.6 27 167-195 71-97 (188)
192 2ehe_A Four and A half LIM dom 34.2 25 0.00085 23.1 2.4 28 166-195 16-43 (82)
193 1x62_A C-terminal LIM domain p 33.8 26 0.0009 22.9 2.5 29 164-196 14-42 (79)
194 1v6g_A Actin binding LIM prote 33.3 29 0.00099 22.7 2.6 26 166-195 16-41 (81)
195 2rgt_A Fusion of LIM/homeobox 33.1 21 0.00071 27.2 2.1 38 165-203 93-130 (169)
196 2lcq_A Putative toxin VAPC6; P 32.8 9.9 0.00034 29.0 0.2 8 205-212 150-157 (165)
197 1x64_A Alpha-actinin-2 associa 32.4 31 0.001 23.1 2.7 28 164-195 24-51 (89)
198 1wig_A KIAA1808 protein; LIM d 32.3 35 0.0012 22.0 2.9 34 164-199 30-63 (73)
199 2lq6_A Bromodomain-containing 32.1 32 0.0011 23.6 2.8 33 165-198 17-50 (87)
200 2xjy_A Rhombotin-2; oncoprotei 32.0 26 0.00088 25.2 2.4 27 167-195 68-94 (131)
201 2kpi_A Uncharacterized protein 31.7 18 0.00062 22.9 1.3 28 164-191 9-38 (56)
202 2das_A Zinc finger MYM-type pr 31.4 44 0.0015 21.7 3.1 38 163-200 18-56 (62)
203 2jtn_A LIM domain-binding prot 31.2 21 0.00071 27.5 1.8 12 166-177 120-131 (182)
204 2cur_A Skeletal muscle LIM-pro 31.0 30 0.001 21.8 2.4 33 165-200 31-63 (69)
205 2d8z_A Four and A half LIM dom 30.7 33 0.0011 21.6 2.5 31 165-198 31-61 (70)
206 2l4z_A DNA endonuclease RBBP8, 29.7 26 0.00089 25.4 2.0 29 164-195 60-88 (123)
207 1j2o_A FLIN2, fusion of rhombo 29.1 46 0.0016 23.4 3.3 38 163-202 28-66 (114)
208 3k3f_A UREA transporter; membr 28.9 68 0.0023 27.7 4.9 25 27-51 213-237 (340)
209 2qi9_A Vitamin B12 import syst 28.6 64 0.0022 27.5 4.6 19 11-29 53-71 (326)
210 1m3v_A FLIN4, fusion of the LI 28.1 51 0.0017 23.5 3.4 46 166-213 33-79 (122)
211 2egq_A FHL1 protein; LIM domai 27.6 38 0.0013 21.8 2.4 28 165-195 15-46 (77)
212 1b8t_A Protein (CRP1); LIM dom 26.9 29 0.001 26.9 2.0 27 166-195 116-142 (192)
213 2dlo_A Thyroid receptor-intera 26.4 40 0.0014 22.0 2.4 11 166-176 42-52 (81)
214 2jvx_A NF-kappa-B essential mo 25.9 16 0.00056 20.0 0.2 8 204-211 4-11 (28)
215 2fiy_A Protein FDHE homolog; F 25.8 7.1 0.00024 33.5 -2.0 48 163-211 180-230 (309)
216 2cuq_A Four and A half LIM dom 24.9 49 0.0017 21.4 2.6 10 166-175 42-51 (80)
217 3vhs_A ATPase wrnip1; zinc fin 22.0 5.1 0.00018 21.6 -2.3 13 165-177 6-18 (29)
218 1x3h_A Leupaxin; paxillin fami 22.0 53 0.0018 21.2 2.3 12 166-177 42-53 (80)
219 2iyb_E Testin, TESS, TES; LIM 22.0 44 0.0015 20.9 1.8 26 167-195 4-32 (65)
220 1a7i_A QCRP2 (LIM1); LIM domai 21.9 32 0.0011 22.5 1.2 27 166-195 8-34 (81)
221 1loi_A Cyclic 3',5'-AMP specif 21.1 5.4 0.00018 20.9 -2.2 12 190-201 6-17 (26)
No 1
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.80 E-value=5.4e-20 Score=133.61 Aligned_cols=78 Identities=36% Similarity=0.795 Sum_probs=68.8
Q ss_pred cCcccCCCCCHHHHhcCCceeeeccCC-CCCCCcccccccccccCceeeecCCCCCcccHhhHHHHHhcCCCCcccCCCC
Q 028116 135 DCRALSRGLTGESLKKLPCHVILDEIK-PTQSSCCSICLQDIIVGELARSLPHCHHTFHLACVDKWLIRHGSCPVCRRDV 213 (213)
Q Consensus 135 ~~~~~~~gls~~~i~~lp~~~~~~~~~-~~~~~~C~ICle~~~~ge~v~~Lp~C~H~FH~~CI~~WL~~~~sCPlCR~~v 213 (213)
......++++++.+++||...+..... ...+..|+||+++|..++.++.+| |+|.||..||++|++++.+||+||+++
T Consensus 9 ~~~~~~~~~s~~~i~~lp~~~~~~~~~~~~~~~~C~IC~~~~~~~~~~~~l~-C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~ 87 (91)
T 2l0b_A 9 SHMVANPPASKESIDALPEILVTEDHGAVGQEMCCPICCSEYVKGDVATELP-CHHYFHKPCVSIWLQKSGTCPVCRCMF 87 (91)
T ss_dssp CCSSCCCCCCHHHHHTSCEEECCTTCSSSSSCSEETTTTEECCTTCEEEEET-TTEEEEHHHHHHHHTTTCBCTTTCCBS
T ss_pred CCCcCCCCCCHHHHHhCCCeeecccccccCCCCCCcccChhhcCCCcEEecC-CCChHHHHHHHHHHHcCCcCcCcCccC
Confidence 344567899999999999998876554 356788999999999999999999 999999999999999999999999875
No 2
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=1.5e-19 Score=126.23 Aligned_cols=68 Identities=37% Similarity=0.807 Sum_probs=59.9
Q ss_pred HHHHhcCCceeeeccCCCCCCCcccccccccccCceeeecCCCCCcccHhhHHHHHhcCCCCcccCCCC
Q 028116 145 GESLKKLPCHVILDEIKPTQSSCCSICLQDIIVGELARSLPHCHHTFHLACVDKWLIRHGSCPVCRRDV 213 (213)
Q Consensus 145 ~~~i~~lp~~~~~~~~~~~~~~~C~ICle~~~~ge~v~~Lp~C~H~FH~~CI~~WL~~~~sCPlCR~~v 213 (213)
.+.++++|..++.......++..|+||+++|..++.++.+| |+|.||..||.+|++++.+||+||+++
T Consensus 3 ~~~i~~lp~~~~~~~~~~~~~~~C~IC~~~~~~~~~~~~l~-C~H~fh~~Ci~~w~~~~~~CP~Cr~~~ 70 (75)
T 1x4j_A 3 SGSSGQLPSYRFNPNNHQSEQTLCVVCMCDFESRQLLRVLP-CNHEFHAKCVDKWLKANRTCPICRADS 70 (75)
T ss_dssp CCCCSSCCCEEBCSSSCSSSCCEETTTTEECCBTCEEEEET-TTEEEETTHHHHHHHHCSSCTTTCCCC
T ss_pred HhhHhhCCcEEecCccccCCCCCCeECCcccCCCCeEEEEC-CCCHhHHHHHHHHHHcCCcCcCcCCcC
Confidence 34567888888876655567788999999999999999999 999999999999999999999999875
No 3
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.69 E-value=1.2e-17 Score=109.58 Aligned_cols=51 Identities=47% Similarity=1.024 Sum_probs=47.0
Q ss_pred CCCCcccccccccccCceeeecCCCCCcccHhhHHHHHhcCCCCcccCCCC
Q 028116 163 TQSSCCSICLQDIIVGELARSLPHCHHTFHLACVDKWLIRHGSCPVCRRDV 213 (213)
Q Consensus 163 ~~~~~C~ICle~~~~ge~v~~Lp~C~H~FH~~CI~~WL~~~~sCPlCR~~v 213 (213)
+++.+|+||+++|..++.+..+|.|+|.||..||.+|++++.+||+||+++
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~ 53 (55)
T 1iym_A 3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTV 53 (55)
T ss_dssp CCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCS
T ss_pred CCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEe
Confidence 356889999999999998889988999999999999999999999999875
No 4
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.64 E-value=1.4e-16 Score=109.07 Aligned_cols=50 Identities=48% Similarity=1.072 Sum_probs=46.3
Q ss_pred CCCCcccccccccccCceeeecCCCCCcccHhhHHHHHhcCCCCcccCCCC
Q 028116 163 TQSSCCSICLQDIIVGELARSLPHCHHTFHLACVDKWLIRHGSCPVCRRDV 213 (213)
Q Consensus 163 ~~~~~C~ICle~~~~ge~v~~Lp~C~H~FH~~CI~~WL~~~~sCPlCR~~v 213 (213)
..+..|+||++.|..++.++.+| |+|.||..||.+|+.++.+||+||+++
T Consensus 12 ~~~~~C~IC~~~~~~~~~~~~~~-C~H~fc~~Ci~~~~~~~~~CP~Cr~~~ 61 (69)
T 2kiz_A 12 DTEEKCTICLSILEEGEDVRRLP-CMHLFHQVCVDQWLITNKKCPICRVDI 61 (69)
T ss_dssp TCCCSBTTTTBCCCSSSCEEECT-TSCEEEHHHHHHHHHHCSBCTTTCSBS
T ss_pred CCCCCCeeCCccccCCCcEEEeC-CCCHHHHHHHHHHHHcCCCCcCcCccc
Confidence 56688999999999888899999 999999999999999999999999875
No 5
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=1.6e-16 Score=110.23 Aligned_cols=50 Identities=34% Similarity=0.804 Sum_probs=46.3
Q ss_pred CCCCcccccccccccCceeeecCCCCCcccHhhHHHHHhcCCCCcccCCCC
Q 028116 163 TQSSCCSICLQDIIVGELARSLPHCHHTFHLACVDKWLIRHGSCPVCRRDV 213 (213)
Q Consensus 163 ~~~~~C~ICle~~~~ge~v~~Lp~C~H~FH~~CI~~WL~~~~sCPlCR~~v 213 (213)
..+..|+||+++|..++.+..+| |+|.||..||.+|++++.+||+||+++
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~-C~H~f~~~Ci~~~~~~~~~CP~Cr~~~ 62 (74)
T 2ep4_A 13 NLHELCAVCLEDFKPRDELGICP-CKHAFHRKCLIKWLEVRKVCPLCNMPV 62 (74)
T ss_dssp CCSCBCSSSCCBCCSSSCEEEET-TTEEEEHHHHHHHHHHCSBCTTTCCBC
T ss_pred CCCCCCcCCCcccCCCCcEEEcC-CCCEecHHHHHHHHHcCCcCCCcCccc
Confidence 45688999999999988888998 999999999999999999999999875
No 6
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.62 E-value=9e-17 Score=114.21 Aligned_cols=50 Identities=26% Similarity=0.822 Sum_probs=41.1
Q ss_pred CCCcccccccccc-----------cCceeeecCCCCCcccHhhHHHHHhcCCCCcccCCCC
Q 028116 164 QSSCCSICLQDII-----------VGELARSLPHCHHTFHLACVDKWLIRHGSCPVCRRDV 213 (213)
Q Consensus 164 ~~~~C~ICle~~~-----------~ge~v~~Lp~C~H~FH~~CI~~WL~~~~sCPlCR~~v 213 (213)
++..|+||+++|. .++.++.+|.|+|.||..||++||+++++||+||+++
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~ 74 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDW 74 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBC
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCc
Confidence 4556777777664 4566777777999999999999999999999999875
No 7
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.61 E-value=3.3e-16 Score=109.78 Aligned_cols=50 Identities=44% Similarity=1.051 Sum_probs=46.2
Q ss_pred CCCCcccccccccccCceeeecCCCCCcccHhhHHHHHhcCCCCcccCCCC
Q 028116 163 TQSSCCSICLQDIIVGELARSLPHCHHTFHLACVDKWLIRHGSCPVCRRDV 213 (213)
Q Consensus 163 ~~~~~C~ICle~~~~ge~v~~Lp~C~H~FH~~CI~~WL~~~~sCPlCR~~v 213 (213)
..+..|+||++.|..++.++.+| |+|.||..||.+|++++.+||+||+++
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~-C~H~fc~~Ci~~~~~~~~~CP~Cr~~~ 62 (78)
T 2ect_A 13 GSGLECPVCKEDYALGESVRQLP-CNHLFHDSCIVPWLEQHDSCPVCRKSL 62 (78)
T ss_dssp SSSCCCTTTTSCCCTTSCEEECT-TSCEEETTTTHHHHTTTCSCTTTCCCC
T ss_pred CCCCCCeeCCccccCCCCEEEeC-CCCeecHHHHHHHHHcCCcCcCcCCcc
Confidence 55788999999999988888998 999999999999999999999999875
No 8
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.57 E-value=1.5e-15 Score=99.23 Aligned_cols=50 Identities=38% Similarity=0.781 Sum_probs=43.6
Q ss_pred CCCCcccccccccccC-ceeeecCCCCCcccHhhHHHHHhcCCCCcccCCCC
Q 028116 163 TQSSCCSICLQDIIVG-ELARSLPHCHHTFHLACVDKWLIRHGSCPVCRRDV 213 (213)
Q Consensus 163 ~~~~~C~ICle~~~~g-e~v~~Lp~C~H~FH~~CI~~WL~~~~sCPlCR~~v 213 (213)
..+..|+||+++|..+ +.+..+| |+|.||..||.+|++.+.+||+||+++
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~ 53 (55)
T 2ecm_A 3 SGSSGCPICLEDIHTSRVVAHVLP-CGHLLHRTCYEEMLKEGYRCPLCSGPS 53 (55)
T ss_dssp SCCCSCTTTCCCCCTTTSCEEECT-TSCEEETTHHHHHHHHTCCCTTSCCSS
T ss_pred CCCCcCcccChhhcCCCcCeEecC-CCCcccHHHHHHHHHcCCcCCCCCCcC
Confidence 4568899999999665 4567787 999999999999999999999999875
No 9
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.56 E-value=1.9e-15 Score=113.24 Aligned_cols=50 Identities=28% Similarity=0.662 Sum_probs=40.3
Q ss_pred CCCCcccccccccccCc---------------eeeecCCCCCcccHhhHHHHHh-----cCCCCcccCCCC
Q 028116 163 TQSSCCSICLQDIIVGE---------------LARSLPHCHHTFHLACVDKWLI-----RHGSCPVCRRDV 213 (213)
Q Consensus 163 ~~~~~C~ICle~~~~ge---------------~v~~Lp~C~H~FH~~CI~~WL~-----~~~sCPlCR~~v 213 (213)
..+..|+||+++|..++ .++.+| |+|.||..||++|+. .+.+||+||+.+
T Consensus 23 ~~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~-C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~ 92 (114)
T 1v87_A 23 APEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTK-CSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIY 92 (114)
T ss_dssp CCSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESS-SCCEECHHHHHHHHHHTCCSSCCBCTTTCCBS
T ss_pred CCCCcCccCChhhcCcccccccccccccCcccceecCC-CCCcccHHHHHHHHHcccCCCCCcCCCCCCcc
Confidence 34578999999997643 334666 999999999999994 567999999863
No 10
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.54 E-value=4e-15 Score=111.17 Aligned_cols=49 Identities=31% Similarity=0.716 Sum_probs=42.2
Q ss_pred CCCCcccccccccccC--------------c-eeeecCCCCCcccHhhHHHHHhcCCCCcccCCC
Q 028116 163 TQSSCCSICLQDIIVG--------------E-LARSLPHCHHTFHLACVDKWLIRHGSCPVCRRD 212 (213)
Q Consensus 163 ~~~~~C~ICle~~~~g--------------e-~v~~Lp~C~H~FH~~CI~~WL~~~~sCPlCR~~ 212 (213)
.++..|+||+++|... + .++.+| |+|.||..||++||.++.+||+||++
T Consensus 35 ~~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~-C~H~FH~~Ci~~Wl~~~~~CP~Cr~~ 98 (106)
T 3dpl_R 35 IVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGV-CNHAFHFHCISRWLKTRQVCPLDNRE 98 (106)
T ss_dssp SCSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEET-TSCEEEHHHHHHHHTTCSBCSSSCSB
T ss_pred CCCCCCccCChhHhCcCchhhccccccCCccceEeecc-cCcEECHHHHHHHHHcCCcCcCCCCc
Confidence 5678899999999854 1 355676 99999999999999999999999986
No 11
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.53 E-value=4.2e-15 Score=101.15 Aligned_cols=50 Identities=28% Similarity=0.667 Sum_probs=43.4
Q ss_pred CCCCcccccccccccC----ceeeecCCCCCcccHhhHHHHHhcCCCCcccCCCC
Q 028116 163 TQSSCCSICLQDIIVG----ELARSLPHCHHTFHLACVDKWLIRHGSCPVCRRDV 213 (213)
Q Consensus 163 ~~~~~C~ICle~~~~g----e~v~~Lp~C~H~FH~~CI~~WL~~~~sCPlCR~~v 213 (213)
.+...|+||++.|... +.+..++ |+|.||..||++|+.++.+||+||+++
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~ 66 (69)
T 2ea6_A 13 SGTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKI 66 (69)
T ss_dssp TCCCCCTTTCCCHHHHTTTTCCEEECS-SSCEEEHHHHHHHHHHCSSCTTTCCCC
T ss_pred CCCCCCcccCccccccccccCCeEeCC-CCChhcHHHHHHHHHcCCCCCCCCCcc
Confidence 5578899999998763 3446777 999999999999999999999999875
No 12
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.53 E-value=2.8e-15 Score=102.80 Aligned_cols=50 Identities=28% Similarity=0.667 Sum_probs=43.4
Q ss_pred CCCCcccccccccccC----ceeeecCCCCCcccHhhHHHHHhcCCCCcccCCCC
Q 028116 163 TQSSCCSICLQDIIVG----ELARSLPHCHHTFHLACVDKWLIRHGSCPVCRRDV 213 (213)
Q Consensus 163 ~~~~~C~ICle~~~~g----e~v~~Lp~C~H~FH~~CI~~WL~~~~sCPlCR~~v 213 (213)
.++..|+||++.|... +.+..+| |+|.||..||.+|++++.+||+||+++
T Consensus 8 ~~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~ 61 (71)
T 3ng2_A 8 SGTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKI 61 (71)
T ss_dssp TTCCBCTTTCCBHHHHHTTTCCEEECT-TSCEEEHHHHHHHHHHCSBCTTTCCBC
T ss_pred CCCCCCcccChhhhccccccCCeEeCC-CCChHhHHHHHHHHHcCCCCCCCCCcc
Confidence 5678899999998763 4556777 999999999999999999999999874
No 13
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.51 E-value=5.2e-15 Score=99.23 Aligned_cols=49 Identities=29% Similarity=0.656 Sum_probs=42.5
Q ss_pred CCCcccccccccccC----ceeeecCCCCCcccHhhHHHHHhcCCCCcccCCCC
Q 028116 164 QSSCCSICLQDIIVG----ELARSLPHCHHTFHLACVDKWLIRHGSCPVCRRDV 213 (213)
Q Consensus 164 ~~~~C~ICle~~~~g----e~v~~Lp~C~H~FH~~CI~~WL~~~~sCPlCR~~v 213 (213)
++..|+||++.+... +.+..++ |+|.||..||.+|++++.+||+||+++
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~ 54 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKI 54 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEET-TSCEEEHHHHHHHHHHCSBCTTTCCBC
T ss_pred CCCCCCccChhhhCccccCCCEEeCC-CCCchhHHHHHHHHHcCCCCCCCCccC
Confidence 457899999998763 4456777 999999999999999999999999875
No 14
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.48 E-value=1.7e-14 Score=102.50 Aligned_cols=49 Identities=27% Similarity=0.696 Sum_probs=42.3
Q ss_pred CCCCcccccccccccCceeeecCCCC-----CcccHhhHHHHHhcCC--CCcccCCCC
Q 028116 163 TQSSCCSICLQDIIVGELARSLPHCH-----HTFHLACVDKWLIRHG--SCPVCRRDV 213 (213)
Q Consensus 163 ~~~~~C~ICle~~~~ge~v~~Lp~C~-----H~FH~~CI~~WL~~~~--sCPlCR~~v 213 (213)
.++..|.||+++|.+++.+ .+| |+ |.||..||++||..++ +||+||+++
T Consensus 13 ~~~~~C~IC~~~~~~~~~l-~~p-C~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~ 68 (80)
T 2d8s_A 13 SSQDICRICHCEGDDESPL-ITP-CHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEF 68 (80)
T ss_dssp TTSCCCSSSCCCCCSSSCE-ECS-SSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBC
T ss_pred CCCCCCeEcCccccCCCee-Eec-cccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCee
Confidence 5668899999999887766 688 96 9999999999998764 899999864
No 15
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.48 E-value=2e-14 Score=97.89 Aligned_cols=48 Identities=35% Similarity=0.942 Sum_probs=41.8
Q ss_pred CCCCcccccccccccCceeeecCCCCCcccHhhHHHHHhcCCCCcccCCCC
Q 028116 163 TQSSCCSICLQDIIVGELARSLPHCHHTFHLACVDKWLIRHGSCPVCRRDV 213 (213)
Q Consensus 163 ~~~~~C~ICle~~~~ge~v~~Lp~C~H~FH~~CI~~WL~~~~sCPlCR~~v 213 (213)
+.+..|+||++.+.. .+..+| |+|.||..|+.+|+.++.+||+||+++
T Consensus 3 ~~~~~C~IC~~~~~~--~~~~~~-C~H~fc~~Ci~~~~~~~~~CP~Cr~~~ 50 (68)
T 1chc_A 3 TVAERCPICLEDPSN--YSMALP-CLHAFCYVCITRWIRQNPTCPLCKVPV 50 (68)
T ss_dssp CCCCCCSSCCSCCCS--CEEETT-TTEEESTTHHHHHHHHSCSTTTTCCCC
T ss_pred CCCCCCeeCCccccC--CcEecC-CCCeeHHHHHHHHHhCcCcCcCCChhh
Confidence 346789999999864 356788 999999999999999999999999875
No 16
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=99.46 E-value=3.6e-15 Score=113.31 Aligned_cols=50 Identities=30% Similarity=0.737 Sum_probs=1.9
Q ss_pred CCCCcccccccccccC--------------ceeeecCCCCCcccHhhHHHHHhcCCCCcccCCC
Q 028116 163 TQSSCCSICLQDIIVG--------------ELARSLPHCHHTFHLACVDKWLIRHGSCPVCRRD 212 (213)
Q Consensus 163 ~~~~~C~ICle~~~~g--------------e~v~~Lp~C~H~FH~~CI~~WL~~~~sCPlCR~~ 212 (213)
.+++.|+||+++|... +....++.|+|.||..||++||+++++||+||++
T Consensus 46 ~~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~ 109 (117)
T 4a0k_B 46 IVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNRE 109 (117)
T ss_dssp CCC-------------------------------------------------------------
T ss_pred CCCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCCcCCCCCCe
Confidence 5678999999999752 2223333499999999999999999999999986
No 17
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.46 E-value=2.6e-14 Score=98.52 Aligned_cols=47 Identities=34% Similarity=0.735 Sum_probs=41.6
Q ss_pred CCCCcccccccccccCceeeecCCCCCcccHhhHHHHHhcCCCCcccCCCC
Q 028116 163 TQSSCCSICLQDIIVGELARSLPHCHHTFHLACVDKWLIRHGSCPVCRRDV 213 (213)
Q Consensus 163 ~~~~~C~ICle~~~~ge~v~~Lp~C~H~FH~~CI~~WL~~~~sCPlCR~~v 213 (213)
.++..|+||++.+.. ...+| |+|.||..||.+|+..+.+||+||+++
T Consensus 13 ~~~~~C~IC~~~~~~---~~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~ 59 (71)
T 2d8t_A 13 LTVPECAICLQTCVH---PVSLP-CKHVFCYLCVKGASWLGKRCALCRQEI 59 (71)
T ss_dssp SSCCBCSSSSSBCSS---EEEET-TTEEEEHHHHHHCTTCSSBCSSSCCBC
T ss_pred CCCCCCccCCcccCC---CEEcc-CCCHHHHHHHHHHHHCCCcCcCcCchh
Confidence 556889999999865 46778 999999999999999999999999875
No 18
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.45 E-value=1.6e-14 Score=99.01 Aligned_cols=46 Identities=41% Similarity=0.979 Sum_probs=41.1
Q ss_pred CCCCcccccccccccCceeeecCCCCCcccHhhHHHHHhcCCCCcccCCCC
Q 028116 163 TQSSCCSICLQDIIVGELARSLPHCHHTFHLACVDKWLIRHGSCPVCRRDV 213 (213)
Q Consensus 163 ~~~~~C~ICle~~~~ge~v~~Lp~C~H~FH~~CI~~WL~~~~sCPlCR~~v 213 (213)
.++..|+||++.+.. ..+| |+|.||..||.+|+.++.+||+||+++
T Consensus 13 ~~~~~C~IC~~~~~~----~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~ 58 (70)
T 2ecn_A 13 TDEEECCICMDGRAD----LILP-CAHSFCQKCIDKWSDRHRNCPICRLQM 58 (70)
T ss_dssp CCCCCCSSSCCSCCS----EEET-TTEEECHHHHHHSSCCCSSCHHHHHCT
T ss_pred CCCCCCeeCCcCccC----cccC-CCCcccHHHHHHHHHCcCcCCCcCCcc
Confidence 456889999999876 6788 999999999999999999999999864
No 19
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.44 E-value=6.7e-14 Score=99.64 Aligned_cols=50 Identities=28% Similarity=0.654 Sum_probs=43.6
Q ss_pred CCCCcccccccccccCce-eeecCCCCCcccHhhHHHHHhcC---CCCcccCCCC
Q 028116 163 TQSSCCSICLQDIIVGEL-ARSLPHCHHTFHLACVDKWLIRH---GSCPVCRRDV 213 (213)
Q Consensus 163 ~~~~~C~ICle~~~~ge~-v~~Lp~C~H~FH~~CI~~WL~~~---~sCPlCR~~v 213 (213)
.+...|+||++.|...+. +..+| |+|.||..||.+|+..+ .+||+||+++
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~ 66 (88)
T 2ct2_A 13 REVLECPICMESFTEEQLRPKLLH-CGHTICRQCLEKLLASSINGVRCPFCSKIT 66 (88)
T ss_dssp CSCCBCTTTCCBCCTTSSCEEECS-SSCEEEHHHHHHHHHHCSSCBCCTTTCCCB
T ss_pred cCCCCCccCCccccccCCCeEECC-CCChhhHHHHHHHHHcCCCCcCCCCCCCcc
Confidence 456889999999988764 77887 99999999999999986 7999999863
No 20
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.43 E-value=7.9e-14 Score=96.30 Aligned_cols=47 Identities=34% Similarity=0.663 Sum_probs=40.7
Q ss_pred CCCCcccccccccccCceeeec-CCCCCcccHhhHHHHHhcCCCCcccCCCC
Q 028116 163 TQSSCCSICLQDIIVGELARSL-PHCHHTFHLACVDKWLIRHGSCPVCRRDV 213 (213)
Q Consensus 163 ~~~~~C~ICle~~~~ge~v~~L-p~C~H~FH~~CI~~WL~~~~sCPlCR~~v 213 (213)
.++..|+||++.+.+ ...+ + |+|.||..||.+|+..+.+||+||+++
T Consensus 13 ~~~~~C~IC~~~~~~---p~~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~ 60 (72)
T 2djb_A 13 TPYILCSICKGYLID---ATTITE-CLHTFCKSCIVRHFYYSNRCPKCNIVV 60 (72)
T ss_dssp CGGGSCTTTSSCCSS---CEECSS-SCCEECHHHHHHHHHHCSSCTTTCCCC
T ss_pred CCCCCCCCCChHHHC---cCEECC-CCCHHHHHHHHHHHHcCCcCCCcCccc
Confidence 456889999999876 3444 6 999999999999999999999999875
No 21
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.41 E-value=1.7e-13 Score=96.59 Aligned_cols=47 Identities=21% Similarity=0.417 Sum_probs=41.2
Q ss_pred CCCCcccccccccccCceeeecCCCCCcccHhhHHHHHhcCCCCcccCCCC
Q 028116 163 TQSSCCSICLQDIIVGELARSLPHCHHTFHLACVDKWLIRHGSCPVCRRDV 213 (213)
Q Consensus 163 ~~~~~C~ICle~~~~ge~v~~Lp~C~H~FH~~CI~~WL~~~~sCPlCR~~v 213 (213)
.....|+||++.|.. +..+| |+|.||..||.+|+..+.+||+||+++
T Consensus 13 ~~~~~C~IC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~ 59 (81)
T 2csy_A 13 EIPFRCFICRQAFQN---PVVTK-CRHYFCESCALEHFRATPRCYICDQPT 59 (81)
T ss_dssp CCCSBCSSSCSBCCS---EEECT-TSCEEEHHHHHHHHHHCSBCSSSCCBC
T ss_pred CCCCCCcCCCchhcC---eeEcc-CCCHhHHHHHHHHHHCCCcCCCcCccc
Confidence 456789999999865 45687 999999999999999999999999874
No 22
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.40 E-value=7e-14 Score=108.49 Aligned_cols=45 Identities=38% Similarity=0.949 Sum_probs=40.5
Q ss_pred CCcccccccccccCceeeecCCCCCcccHhhHHHHHhcCCCCcccCCCC
Q 028116 165 SSCCSICLQDIIVGELARSLPHCHHTFHLACVDKWLIRHGSCPVCRRDV 213 (213)
Q Consensus 165 ~~~C~ICle~~~~ge~v~~Lp~C~H~FH~~CI~~WL~~~~sCPlCR~~v 213 (213)
+..|+||++.|.. +..+| |||.||..||.+|+.++.+||+||+++
T Consensus 53 ~~~C~iC~~~~~~---~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~ 97 (138)
T 4ayc_A 53 ELQCIICSEYFIE---AVTLN-CAHSFCSYCINEWMKRKIECPICRKDI 97 (138)
T ss_dssp HSBCTTTCSBCSS---EEEET-TSCEEEHHHHHHHTTTCSBCTTTCCBC
T ss_pred cCCCcccCcccCC---ceECC-CCCCccHHHHHHHHHcCCcCCCCCCcC
Confidence 4679999999865 56788 999999999999999999999999875
No 23
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.37 E-value=2.9e-13 Score=93.19 Aligned_cols=47 Identities=28% Similarity=0.675 Sum_probs=40.0
Q ss_pred CCCCcccccccccccCceeeecCCCCCcccHhhHHHHHh---cCCCCcccCCCC
Q 028116 163 TQSSCCSICLQDIIVGELARSLPHCHHTFHLACVDKWLI---RHGSCPVCRRDV 213 (213)
Q Consensus 163 ~~~~~C~ICle~~~~ge~v~~Lp~C~H~FH~~CI~~WL~---~~~sCPlCR~~v 213 (213)
.++..|+||++.+.. +..+| |+|.||..||.+|++ .+.+||+||+++
T Consensus 18 ~~~~~C~IC~~~~~~---~~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~ 67 (73)
T 2ysl_A 18 QEEVICPICLDILQK---PVTID-CGHNFCLKCITQIGETSCGFFKCPLCKTSV 67 (73)
T ss_dssp CCCCBCTTTCSBCSS---EEECT-TCCEEEHHHHHHHCSSSCSCCCCSSSCCCC
T ss_pred ccCCEeccCCcccCC---eEEcC-CCChhhHHHHHHHHHcCCCCCCCCCCCCcC
Confidence 456889999999875 55677 999999999999997 456899999875
No 24
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.37 E-value=2.8e-13 Score=94.12 Aligned_cols=47 Identities=23% Similarity=0.641 Sum_probs=40.5
Q ss_pred CCCCcccccccccccCceeeecCCCCCcccHhhHHHHHhcC--CCCcccCCC
Q 028116 163 TQSSCCSICLQDIIVGELARSLPHCHHTFHLACVDKWLIRH--GSCPVCRRD 212 (213)
Q Consensus 163 ~~~~~C~ICle~~~~ge~v~~Lp~C~H~FH~~CI~~WL~~~--~sCPlCR~~ 212 (213)
.++..|+||++.|.. +..+|.|+|.||..||.+|+..+ .+||+||++
T Consensus 13 ~~~~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~ 61 (74)
T 2yur_A 13 PDELLCLICKDIMTD---AVVIPCCGNSYCDECIRTALLESDEHTCPTCHQN 61 (74)
T ss_dssp CGGGSCSSSCCCCTT---CEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCS
T ss_pred CCCCCCcCCChHHhC---CeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCc
Confidence 456889999999876 45577799999999999999876 689999986
No 25
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.36 E-value=2.9e-13 Score=91.77 Aligned_cols=47 Identities=19% Similarity=0.523 Sum_probs=39.3
Q ss_pred CCCCcccccccccccCceeeecCCCCCcccHhhHHHHHh-cCCCCcccCCCC
Q 028116 163 TQSSCCSICLQDIIVGELARSLPHCHHTFHLACVDKWLI-RHGSCPVCRRDV 213 (213)
Q Consensus 163 ~~~~~C~ICle~~~~ge~v~~Lp~C~H~FH~~CI~~WL~-~~~sCPlCR~~v 213 (213)
.++..|+||++.+.. +..++ |||.||..||.+|+. .+.+||+||+++
T Consensus 13 ~~~~~C~IC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~ 60 (66)
T 2ecy_A 13 EDKYKCEKCHLVLCS---PKQTE-CGHRFCESCMAALLSSSSPKCTACQESI 60 (66)
T ss_dssp CCCEECTTTCCEESS---CCCCS-SSCCCCHHHHHHHHTTSSCCCTTTCCCC
T ss_pred CcCCCCCCCChHhcC---eeECC-CCCHHHHHHHHHHHHhCcCCCCCCCcCC
Confidence 456889999999875 33477 999999999999995 567899999875
No 26
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.34 E-value=3.7e-13 Score=102.19 Aligned_cols=50 Identities=28% Similarity=0.667 Sum_probs=43.2
Q ss_pred CCCCcccccccccccC----ceeeecCCCCCcccHhhHHHHHhcCCCCcccCCCC
Q 028116 163 TQSSCCSICLQDIIVG----ELARSLPHCHHTFHLACVDKWLIRHGSCPVCRRDV 213 (213)
Q Consensus 163 ~~~~~C~ICle~~~~g----e~v~~Lp~C~H~FH~~CI~~WL~~~~sCPlCR~~v 213 (213)
.++..|+||++.|.+. +.+..++ |||.||..||.+|++.+.+||+||+++
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~ 58 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKI 58 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEET-TCCEEEHHHHHHHHTTCSBCTTTCCBC
T ss_pred CCCCCCcccChhhhCccccccCeEecC-CCChhhHHHHHHHHHhCCCCCCCCCcC
Confidence 3568899999998763 4557787 999999999999999999999999864
No 27
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.33 E-value=8e-13 Score=100.34 Aligned_cols=50 Identities=28% Similarity=0.667 Sum_probs=43.0
Q ss_pred CCCCcccccccccccC----ceeeecCCCCCcccHhhHHHHHhcCCCCcccCCCC
Q 028116 163 TQSSCCSICLQDIIVG----ELARSLPHCHHTFHLACVDKWLIRHGSCPVCRRDV 213 (213)
Q Consensus 163 ~~~~~C~ICle~~~~g----e~v~~Lp~C~H~FH~~CI~~WL~~~~sCPlCR~~v 213 (213)
++...|+||++.|... ..+..++ |+|.||..||++|++.+.+||+||+++
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~ 123 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKI 123 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEET-TSBEEEHHHHHHHHHHCSBCTTTCCBC
T ss_pred CCCCCCCCCCCccccccccCcceEeCC-CCChhhHHHHHHHHHcCCCCCCCCCcC
Confidence 5678899999998763 3446676 999999999999999999999999875
No 28
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.33 E-value=4.4e-13 Score=98.54 Aligned_cols=47 Identities=28% Similarity=0.758 Sum_probs=40.4
Q ss_pred CCCCcccccccccccCceeee-cCCCCCcccHhhHHHHHhcC-CCCcccCCCC
Q 028116 163 TQSSCCSICLQDIIVGELARS-LPHCHHTFHLACVDKWLIRH-GSCPVCRRDV 213 (213)
Q Consensus 163 ~~~~~C~ICle~~~~ge~v~~-Lp~C~H~FH~~CI~~WL~~~-~sCPlCR~~v 213 (213)
.++..|+||++.|.. +.. ++ |||.||..||.+|+..+ .+||+||+++
T Consensus 20 ~~~~~C~IC~~~~~~---p~~~~~-CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~ 68 (100)
T 3lrq_A 20 AEVFRCFICMEKLRD---ARLCPH-CSKLCCFSCIRRWLTEQRAQCPHCRAPL 68 (100)
T ss_dssp HHHTBCTTTCSBCSS---EEECTT-TCCEEEHHHHHHHHHHTCSBCTTTCCBC
T ss_pred CCCCCCccCCccccC---ccccCC-CCChhhHHHHHHHHHHCcCCCCCCCCcC
Confidence 346889999999875 445 77 99999999999999988 6999999874
No 29
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.32 E-value=8.2e-13 Score=92.25 Aligned_cols=47 Identities=21% Similarity=0.453 Sum_probs=40.9
Q ss_pred CCCCcccccccccccCceeeecCCCCCcccHhhHHHHHhc-CCCCcccCCCC
Q 028116 163 TQSSCCSICLQDIIVGELARSLPHCHHTFHLACVDKWLIR-HGSCPVCRRDV 213 (213)
Q Consensus 163 ~~~~~C~ICle~~~~ge~v~~Lp~C~H~FH~~CI~~WL~~-~~sCPlCR~~v 213 (213)
.++..|+||++.|.+ +..+| |||.||..||.+|+.+ +.+||+||+++
T Consensus 6 ~~~~~C~IC~~~~~~---Pv~~~-CgH~fc~~Ci~~~~~~~~~~CP~C~~~~ 53 (78)
T 1t1h_A 6 PEYFRCPISLELMKD---PVIVS-TGQTYERSSIQKWLDAGHKTCPKSQETL 53 (78)
T ss_dssp SSSSSCTTTSCCCSS---EEEET-TTEEEEHHHHHHHHTTTCCBCTTTCCBC
T ss_pred cccCCCCCccccccC---CEEcC-CCCeecHHHHHHHHHHCcCCCCCCcCCC
Confidence 457889999999875 55678 9999999999999987 78999999864
No 30
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.31 E-value=1.2e-12 Score=92.07 Aligned_cols=47 Identities=34% Similarity=0.724 Sum_probs=40.4
Q ss_pred CCCCcccccccccccCceeeecCCCCCcccHhhHHHHHhc------CCCCcccCCCC
Q 028116 163 TQSSCCSICLQDIIVGELARSLPHCHHTFHLACVDKWLIR------HGSCPVCRRDV 213 (213)
Q Consensus 163 ~~~~~C~ICle~~~~ge~v~~Lp~C~H~FH~~CI~~WL~~------~~sCPlCR~~v 213 (213)
.++..|+||++.|.. ...+| |+|.||..||.+|+.. +.+||+||+++
T Consensus 17 ~~~~~C~IC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~ 69 (85)
T 2ecw_A 17 KEEVTCPICLELLKE---PVSAD-CNHSFCRACITLNYESNRNTDGKGNCPVCRVPY 69 (85)
T ss_dssp CTTTSCTTTCSCCSS---CEECT-TSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCC
T ss_pred ccCCCCcCCChhhCc---ceeCC-CCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcC
Confidence 456889999999876 34678 9999999999999988 67899999874
No 31
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.30 E-value=1.3e-12 Score=91.96 Aligned_cols=47 Identities=36% Similarity=0.743 Sum_probs=40.6
Q ss_pred CCCCcccccccccccCceeeecCCCCCcccHhhHHHHHhc------CCCCcccCCCC
Q 028116 163 TQSSCCSICLQDIIVGELARSLPHCHHTFHLACVDKWLIR------HGSCPVCRRDV 213 (213)
Q Consensus 163 ~~~~~C~ICle~~~~ge~v~~Lp~C~H~FH~~CI~~WL~~------~~sCPlCR~~v 213 (213)
.++..|+||++.+.. +..+| |+|.||..|+.+|+.. +.+||+||+++
T Consensus 17 ~~~~~C~IC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~ 69 (85)
T 2ecv_A 17 KEEVTCPICLELLTQ---PLSLD-CGHSFCQACLTANHKKSMLDKGESSCPVCRISY 69 (85)
T ss_dssp CCCCCCTTTCSCCSS---CBCCS-SSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSS
T ss_pred cCCCCCCCCCcccCC---ceeCC-CCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCcc
Confidence 456889999999865 45677 9999999999999987 78999999864
No 32
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.29 E-value=3.7e-13 Score=93.94 Aligned_cols=47 Identities=32% Similarity=0.639 Sum_probs=40.3
Q ss_pred CCCCcccccccccccCceeeecCCCCCcccHhhHHHHHhc-------CCCCcccCCCC
Q 028116 163 TQSSCCSICLQDIIVGELARSLPHCHHTFHLACVDKWLIR-------HGSCPVCRRDV 213 (213)
Q Consensus 163 ~~~~~C~ICle~~~~ge~v~~Lp~C~H~FH~~CI~~WL~~-------~~sCPlCR~~v 213 (213)
.++..|+||++.|.. +..+| |||.||..||.+|+.. +.+||+||+++
T Consensus 10 ~~~~~C~IC~~~~~~---p~~l~-CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~ 63 (79)
T 2egp_A 10 QEEVTCPICLELLTE---PLSLD-CGHSLCRACITVSNKEAVTSMGGKSSCPVCGISY 63 (79)
T ss_dssp CCCCEETTTTEECSS---CCCCS-SSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCC
T ss_pred ccCCCCcCCCcccCC---eeECC-CCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcC
Confidence 456889999999876 45678 9999999999999987 66899999874
No 33
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.29 E-value=1.4e-12 Score=95.30 Aligned_cols=46 Identities=28% Similarity=0.688 Sum_probs=39.9
Q ss_pred CCCcccccccccccCceeeec-CCCCCcccHhhHHHHHhcCCCCcccCCCC
Q 028116 164 QSSCCSICLQDIIVGELARSL-PHCHHTFHLACVDKWLIRHGSCPVCRRDV 213 (213)
Q Consensus 164 ~~~~C~ICle~~~~ge~v~~L-p~C~H~FH~~CI~~WL~~~~sCPlCR~~v 213 (213)
+...|+||++.|.. ...+ | |||.||..||.+|+..+.+||+||+++
T Consensus 21 ~~~~C~IC~~~~~~---p~~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~ 67 (99)
T 2y43_A 21 DLLRCGICFEYFNI---AMIIPQ-CSHNYCSLCIRKFLSYKTQCPTCCVTV 67 (99)
T ss_dssp HHTBCTTTCSBCSS---EEECTT-TCCEEEHHHHHHHHTTCCBCTTTCCBC
T ss_pred CCCCcccCChhhCC---cCEECC-CCCHhhHHHHHHHHHCCCCCCCCCCcC
Confidence 45789999999875 4455 6 999999999999999999999999864
No 34
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.29 E-value=1.9e-12 Score=90.60 Aligned_cols=47 Identities=30% Similarity=0.700 Sum_probs=40.4
Q ss_pred CCCCcccccccccccCceeeecCCCCCcccHhhHHHHHhcC--CCCcccCCC
Q 028116 163 TQSSCCSICLQDIIVGELARSLPHCHHTFHLACVDKWLIRH--GSCPVCRRD 212 (213)
Q Consensus 163 ~~~~~C~ICle~~~~ge~v~~Lp~C~H~FH~~CI~~WL~~~--~sCPlCR~~ 212 (213)
+....|.||++.+..++.-. .|+|.||..||.+||+++ .+||+||++
T Consensus 13 ~~i~~C~IC~~~i~~g~~C~---~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~ 61 (74)
T 2ct0_A 13 DAVKICNICHSLLIQGQSCE---TCGIRMHLPCVAKYFQSNAEPRCPHCNDY 61 (74)
T ss_dssp SSSCBCSSSCCBCSSSEECS---SSCCEECHHHHHHHSTTCSSCCCTTTCSC
T ss_pred CCCCcCcchhhHcccCCccC---CCCchhhHHHHHHHHHhcCCCCCCCCcCc
Confidence 45688999999998765332 599999999999999987 899999986
No 35
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.28 E-value=2.5e-12 Score=86.24 Aligned_cols=43 Identities=28% Similarity=0.688 Sum_probs=36.9
Q ss_pred CCCCcccccccccccCceeeecCCCCCcccHhhHHHHHh---cCCCCccc
Q 028116 163 TQSSCCSICLQDIIVGELARSLPHCHHTFHLACVDKWLI---RHGSCPVC 209 (213)
Q Consensus 163 ~~~~~C~ICle~~~~ge~v~~Lp~C~H~FH~~CI~~WL~---~~~sCPlC 209 (213)
.++..|+||++.+.+ +..+| |+|.||..||.+|++ .+.+||+|
T Consensus 18 ~~~~~C~IC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 18 QEEVICPICLDILQK---PVTID-CGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCBCTTTCSBCSS---CEECT-TSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred ccCCCCCcCCchhCC---eEEeC-CCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 456889999999875 55677 999999999999998 45689998
No 36
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.28 E-value=2e-12 Score=87.39 Aligned_cols=49 Identities=29% Similarity=0.598 Sum_probs=38.9
Q ss_pred CCCccccccc-ccccCcee-eecCCCCCcccHhhHHHHHhc-CCCCcccCCCC
Q 028116 164 QSSCCSICLQ-DIIVGELA-RSLPHCHHTFHLACVDKWLIR-HGSCPVCRRDV 213 (213)
Q Consensus 164 ~~~~C~ICle-~~~~ge~v-~~Lp~C~H~FH~~CI~~WL~~-~~sCPlCR~~v 213 (213)
++..|+||++ .+...... ..+| |||.||..||++|+.+ +.+||+||+++
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~ 53 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNV-CGHTLCESCVDLLFVRGAGNCPECGTPL 53 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECT-TCCCEEHHHHHHHHHTTSSSCTTTCCCC
T ss_pred CCCcCCcCCCCccCCCccCeecCC-CCCHhHHHHHHHHHHcCCCcCCCCCCcc
Confidence 3578999999 67665433 3466 9999999999999765 46899999875
No 37
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.28 E-value=1.6e-12 Score=96.51 Aligned_cols=47 Identities=28% Similarity=0.675 Sum_probs=40.6
Q ss_pred CCCCcccccccccccCceeeec-CCCCCcccHhhHHHHHhcCCCCcccCCCC
Q 028116 163 TQSSCCSICLQDIIVGELARSL-PHCHHTFHLACVDKWLIRHGSCPVCRRDV 213 (213)
Q Consensus 163 ~~~~~C~ICle~~~~ge~v~~L-p~C~H~FH~~CI~~WL~~~~sCPlCR~~v 213 (213)
.++..|+||++.|.+ ...+ | |||.||..||.+|+..+.+||+||+++
T Consensus 13 ~~~~~C~IC~~~~~~---p~~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~ 60 (108)
T 2ckl_A 13 NPHLMCVLCGGYFID---ATTIIE-CLHSFCKTCIVRYLETSKYCPICDVQV 60 (108)
T ss_dssp GGGTBCTTTSSBCSS---EEEETT-TCCEEEHHHHHHHHTSCSBCTTTCCBS
T ss_pred CCcCCCccCChHHhC---cCEeCC-CCChhhHHHHHHHHHhCCcCcCCCccc
Confidence 456889999999875 4455 7 999999999999999999999999864
No 38
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.25 E-value=3.6e-12 Score=91.70 Aligned_cols=48 Identities=23% Similarity=0.608 Sum_probs=40.5
Q ss_pred CCCCcccccccccccCceeeecCCCCCcccHhhHHHHHhcC--CCCcccCCCC
Q 028116 163 TQSSCCSICLQDIIVGELARSLPHCHHTFHLACVDKWLIRH--GSCPVCRRDV 213 (213)
Q Consensus 163 ~~~~~C~ICle~~~~ge~v~~Lp~C~H~FH~~CI~~WL~~~--~sCPlCR~~v 213 (213)
.++..|+||++.|.+ +..+|.|||.||..||.+|+..+ .+||+||+++
T Consensus 11 ~~~~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~ 60 (92)
T 3ztg_A 11 PDELLCLICKDIMTD---AVVIPCCGNSYCDECIRTALLESDEHTCPTCHQND 60 (92)
T ss_dssp CTTTEETTTTEECSS---CEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSS
T ss_pred CcCCCCCCCChhhcC---ceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcC
Confidence 556889999999875 55677699999999999999764 5899999863
No 39
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.25 E-value=3.1e-12 Score=97.19 Aligned_cols=46 Identities=26% Similarity=0.615 Sum_probs=39.4
Q ss_pred CCCcccccccccccCceeeecCCCCCcccHhhHHHHHhcCC-CCcccCCCC
Q 028116 164 QSSCCSICLQDIIVGELARSLPHCHHTFHLACVDKWLIRHG-SCPVCRRDV 213 (213)
Q Consensus 164 ~~~~C~ICle~~~~ge~v~~Lp~C~H~FH~~CI~~WL~~~~-sCPlCR~~v 213 (213)
++..|+||++.|.. +..+| |||.||..||.+|+..+. +||+||+++
T Consensus 51 ~~~~C~IC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~ 97 (124)
T 3fl2_A 51 ETFQCICCQELVFR---PITTV-CQHNVCKDCLDRSFRAQVFSCPACRYDL 97 (124)
T ss_dssp HHTBCTTTSSBCSS---EEECT-TSCEEEHHHHHHHHHTTCCBCTTTCCBC
T ss_pred cCCCCCcCChHHcC---cEEee-CCCcccHHHHHHHHhHCcCCCCCCCccC
Confidence 45789999999885 56678 999999999999998655 899999864
No 40
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.24 E-value=3.8e-12 Score=83.61 Aligned_cols=43 Identities=35% Similarity=0.881 Sum_probs=36.2
Q ss_pred CCCCcccccccccccCceeeecCCCCCcccHhhHHHHHh---cCCCCccc
Q 028116 163 TQSSCCSICLQDIIVGELARSLPHCHHTFHLACVDKWLI---RHGSCPVC 209 (213)
Q Consensus 163 ~~~~~C~ICle~~~~ge~v~~Lp~C~H~FH~~CI~~WL~---~~~sCPlC 209 (213)
.++..|+||++.+.+ ...+| |+|.||..||.+|+. ++.+||+|
T Consensus 13 ~~~~~C~IC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 13 QVEASCSVCLEYLKE---PVIIE-CGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CCCCBCSSSCCBCSS---CCCCS-SCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred ccCCCCccCCcccCc---cEeCC-CCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 456889999999876 35677 999999999999954 56789998
No 41
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.23 E-value=7.7e-12 Score=99.44 Aligned_cols=47 Identities=28% Similarity=0.644 Sum_probs=39.3
Q ss_pred CCCcccccccccccCceeeecCCCCCcccHhhHHHHHhc-CCCCcccCCCC
Q 028116 164 QSSCCSICLQDIIVGELARSLPHCHHTFHLACVDKWLIR-HGSCPVCRRDV 213 (213)
Q Consensus 164 ~~~~C~ICle~~~~ge~v~~Lp~C~H~FH~~CI~~WL~~-~~sCPlCR~~v 213 (213)
+...|+||++.|.. .+..+| |||.||..||.+|+.. +.+||+||.++
T Consensus 53 ~~~~C~IC~~~~~~--p~~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~ 100 (165)
T 2ckl_B 53 SELMCPICLDMLKN--TMTTKE-CLHRFCADCIITALRSGNKECPTCRKKL 100 (165)
T ss_dssp HHHBCTTTSSBCSS--EEEETT-TCCEEEHHHHHHHHHTTCCBCTTTCCBC
T ss_pred CCCCCcccChHhhC--cCEeCC-CCChhHHHHHHHHHHhCcCCCCCCCCcC
Confidence 45689999999875 333447 9999999999999997 77899999864
No 42
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.20 E-value=6.8e-12 Score=93.10 Aligned_cols=46 Identities=35% Similarity=0.711 Sum_probs=38.9
Q ss_pred CCCcccccccccccCceeeecCCCCCcccHhhHHHHHhcCC---CCcccCCCC
Q 028116 164 QSSCCSICLQDIIVGELARSLPHCHHTFHLACVDKWLIRHG---SCPVCRRDV 213 (213)
Q Consensus 164 ~~~~C~ICle~~~~ge~v~~Lp~C~H~FH~~CI~~WL~~~~---sCPlCR~~v 213 (213)
+...|+||++.+.. +..+| |||.||..||.+|+..+. +||+||.++
T Consensus 20 ~~~~C~IC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~ 68 (112)
T 1jm7_A 20 KILECPICLELIKE---PVSTK-CDHIFCKFCMLKLLNQKKGPSQCPLCKNDI 68 (112)
T ss_dssp HHTSCSSSCCCCSS---CCBCT-TSCCCCSHHHHHHHHSSSSSCCCTTTSCCC
T ss_pred CCCCCcccChhhcC---eEECC-CCCHHHHHHHHHHHHhCCCCCCCcCCCCcC
Confidence 35789999999865 44577 999999999999998764 899999864
No 43
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.17 E-value=9.7e-12 Score=93.77 Aligned_cols=47 Identities=34% Similarity=0.620 Sum_probs=40.4
Q ss_pred CCCCcccccccccccCceeeecCCCCCcccHhhHHHHHhcCC-CCcccCCCC
Q 028116 163 TQSSCCSICLQDIIVGELARSLPHCHHTFHLACVDKWLIRHG-SCPVCRRDV 213 (213)
Q Consensus 163 ~~~~~C~ICle~~~~ge~v~~Lp~C~H~FH~~CI~~WL~~~~-sCPlCR~~v 213 (213)
.++..|+||++.+.. ...+| |||.||..||.+|+..+. +||+||+++
T Consensus 16 ~~~~~C~IC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~ 63 (118)
T 3hct_A 16 ESKYECPICLMALRE---AVQTP-CGHRFCKACIIKSIRDAGHKCPVDNEIL 63 (118)
T ss_dssp CGGGBCTTTCSBCSS---EEECT-TSCEEEHHHHHHHHHHHCSBCTTTCCBC
T ss_pred CCCCCCCcCChhhcC---eEECC-cCChhhHHHHHHHHhhCCCCCCCCCCCc
Confidence 456889999999875 45677 999999999999998765 999999874
No 44
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.16 E-value=1.6e-11 Score=96.78 Aligned_cols=46 Identities=28% Similarity=0.630 Sum_probs=39.5
Q ss_pred CCCcccccccccccCceeeecCCCCCcccHhhHHHHHhcCC-CCcccCCCC
Q 028116 164 QSSCCSICLQDIIVGELARSLPHCHHTFHLACVDKWLIRHG-SCPVCRRDV 213 (213)
Q Consensus 164 ~~~~C~ICle~~~~ge~v~~Lp~C~H~FH~~CI~~WL~~~~-sCPlCR~~v 213 (213)
+...|+||++.|.. +..+| |+|.||..||.+|+.... +||+||.++
T Consensus 77 ~~~~C~IC~~~~~~---pv~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~ 123 (150)
T 1z6u_A 77 QSFMCVCCQELVYQ---PVTTE-CFHNVCKDCLQRSFKAQVFSCPACRHDL 123 (150)
T ss_dssp HHTBCTTTSSBCSS---EEECT-TSCEEEHHHHHHHHHTTCCBCTTTCCBC
T ss_pred cCCEeecCChhhcC---CEEcC-CCCchhHHHHHHHHHhCCCcCCCCCccC
Confidence 45789999999875 45688 999999999999998765 899999875
No 45
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=99.16 E-value=1.6e-11 Score=83.25 Aligned_cols=47 Identities=26% Similarity=0.450 Sum_probs=39.6
Q ss_pred CCCCcccccccccccCceeee--cCCCCCc-ccHhhHHHHHhcCCCCcccCCCC
Q 028116 163 TQSSCCSICLQDIIVGELARS--LPHCHHT-FHLACVDKWLIRHGSCPVCRRDV 213 (213)
Q Consensus 163 ~~~~~C~ICle~~~~ge~v~~--Lp~C~H~-FH~~CI~~WL~~~~sCPlCR~~v 213 (213)
.++..|+||++.+.+ +.. +| |||. |+..|+.+|.+++.+||+||+++
T Consensus 6 ~~~~~C~IC~~~~~~---~~~~~~p-CgH~~~C~~C~~~~~~~~~~CPiCR~~i 55 (64)
T 2vje_A 6 NAIEPCVICQGRPKN---GCIVHGK-TGHLMACFTCAKKLKKRNKPCPVCRQPI 55 (64)
T ss_dssp GGGSCCTTTSSSCSC---EEEEETT-EEEEEECHHHHHHHHHTTCCCTTTCCCC
T ss_pred CCcCCCCcCCCCCCC---EEEECCC-CCChhhHHHHHHHHHHcCCcCCCcCcch
Confidence 456789999998655 333 48 9999 89999999999999999999975
No 46
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=99.14 E-value=6.1e-12 Score=94.23 Aligned_cols=47 Identities=32% Similarity=0.780 Sum_probs=40.0
Q ss_pred CCCCcccccccccccCceeeecCCCCCcccHhhHHHHHhc-CCCCcccCCCC
Q 028116 163 TQSSCCSICLQDIIVGELARSLPHCHHTFHLACVDKWLIR-HGSCPVCRRDV 213 (213)
Q Consensus 163 ~~~~~C~ICle~~~~ge~v~~Lp~C~H~FH~~CI~~WL~~-~~sCPlCR~~v 213 (213)
.++..|+||++.|.. +..+| |||.||..||.+|+.. +.+||+||+++
T Consensus 13 ~~~~~C~iC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~ 60 (115)
T 3l11_A 13 LSECQCGICMEILVE---PVTLP-CNHTLCKPCFQSTVEKASLCCPFCRRRV 60 (115)
T ss_dssp HHHHBCTTTCSBCSS---CEECT-TSCEECHHHHCCCCCTTTSBCTTTCCBC
T ss_pred CCCCCCccCCcccCc---eeEcC-CCCHHhHHHHHHHHhHCcCCCCCCCccc
Confidence 345789999999875 56678 9999999999999976 67899999864
No 47
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=99.14 E-value=2.3e-11 Score=91.23 Aligned_cols=46 Identities=28% Similarity=0.588 Sum_probs=39.6
Q ss_pred CCCcccccccccccCceeeecCCCCCcccHhhHHHHHhc-CCCCcccCCCC
Q 028116 164 QSSCCSICLQDIIVGELARSLPHCHHTFHLACVDKWLIR-HGSCPVCRRDV 213 (213)
Q Consensus 164 ~~~~C~ICle~~~~ge~v~~Lp~C~H~FH~~CI~~WL~~-~~sCPlCR~~v 213 (213)
++..|+||++.+.+ +..+| |||.||..||.+|+.. +.+||+||+++
T Consensus 22 ~~~~C~IC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~ 68 (116)
T 1rmd_A 22 KSISCQICEHILAD---PVETS-CKHLFCRICILRCLKVMGSYCPSCRYPC 68 (116)
T ss_dssp HHTBCTTTCSBCSS---EEECT-TSCEEEHHHHHHHHHHTCSBCTTTCCBC
T ss_pred CCCCCCCCCcHhcC---cEEcC-CCCcccHHHHHHHHhHCcCcCCCCCCCC
Confidence 35789999999865 45577 9999999999999997 77999999874
No 48
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=99.10 E-value=3.1e-11 Score=81.49 Aligned_cols=49 Identities=20% Similarity=0.425 Sum_probs=39.4
Q ss_pred CCCCcccccccccccCceeeecCCCCCc-ccHhhHHHHHhcCCCCcccCCCC
Q 028116 163 TQSSCCSICLQDIIVGELARSLPHCHHT-FHLACVDKWLIRHGSCPVCRRDV 213 (213)
Q Consensus 163 ~~~~~C~ICle~~~~ge~v~~Lp~C~H~-FH~~CI~~WL~~~~sCPlCR~~v 213 (213)
+.+..|+||++...+. .+..+| |||. |+..|+.+|.+++.+||+||+++
T Consensus 5 ~~~~~C~IC~~~~~~~-~~~~~p-CgH~~~C~~C~~~~~~~~~~CPiCR~~i 54 (63)
T 2vje_B 5 NLLKPCSLCEKRPRDG-NIIHGR-TGHLVTCFHCARRLKKAGASCPICKKEI 54 (63)
T ss_dssp GGGSBCTTTSSSBSCE-EEEETT-EEEEEECHHHHHHHHHTTCBCTTTCCBC
T ss_pred CcCCCCcccCCcCCCe-EEEecC-CCCHhHHHHHHHHHHHhCCcCCCcCchh
Confidence 4567899999976541 122348 9999 99999999999889999999975
No 49
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=99.09 E-value=5.3e-11 Score=106.79 Aligned_cols=46 Identities=26% Similarity=0.712 Sum_probs=40.3
Q ss_pred CCCcccccccccccCceeeecCCCCCcccHhhHHHHHh-cCCCCcccCCCC
Q 028116 164 QSSCCSICLQDIIVGELARSLPHCHHTFHLACVDKWLI-RHGSCPVCRRDV 213 (213)
Q Consensus 164 ~~~~C~ICle~~~~ge~v~~Lp~C~H~FH~~CI~~WL~-~~~sCPlCR~~v 213 (213)
....|+||++.+.. +..+| |||.||..|+.+|+. .+.+||+||+++
T Consensus 331 ~~~~C~ICle~~~~---pv~lp-CGH~FC~~Ci~~wl~~~~~~CP~CR~~i 377 (389)
T 2y1n_A 331 TFQLCKICAENDKD---VKIEP-CGHLMCTSCLTSWQESEGQGCPFCRCEI 377 (389)
T ss_dssp SSSBCTTTSSSBCC---EEEET-TCCEECHHHHHHHHHHTCSBCTTTCCBC
T ss_pred CCCCCCccCcCCCC---eEEeC-CCChhhHHHHHHHHhcCCCCCCCCCCcc
Confidence 34789999998855 67788 999999999999999 688999999875
No 50
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.08 E-value=7.6e-11 Score=84.21 Aligned_cols=47 Identities=11% Similarity=0.071 Sum_probs=42.2
Q ss_pred CCCCcccccccccccCceeeecCCCCCcccHhhHHHHHhcCCCCcccCCCC
Q 028116 163 TQSSCCSICLQDIIVGELARSLPHCHHTFHLACVDKWLIRHGSCPVCRRDV 213 (213)
Q Consensus 163 ~~~~~C~ICle~~~~ge~v~~Lp~C~H~FH~~CI~~WL~~~~sCPlCR~~v 213 (213)
.++..|+||++-|.+ +..+| |||.|+..||.+|+..+.+||+||.++
T Consensus 12 p~~~~CpI~~~~m~d---PV~~~-cGhtf~r~~I~~~l~~~~~cP~~~~~l 58 (85)
T 2kr4_A 12 PDEFRDPLMDTLMTD---PVRLP-SGTVMDRSIILRHLLNSPTDPFNRQML 58 (85)
T ss_dssp CTTTBCTTTCSBCSS---EEECT-TSCEEEHHHHHHHHHHCSBCTTTCCBC
T ss_pred chheECcccCchhcC---CeECC-CCCEECHHHHHHHHhcCCCCCCCcCCC
Confidence 456889999999887 67888 999999999999999999999999864
No 51
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=99.06 E-value=3.5e-11 Score=106.04 Aligned_cols=51 Identities=25% Similarity=0.744 Sum_probs=40.5
Q ss_pred CCCCccccccccccc-Cceee---ecCCCCCcccHhhHHHHHhcC-----------CCCcccCCCC
Q 028116 163 TQSSCCSICLQDIIV-GELAR---SLPHCHHTFHLACVDKWLIRH-----------GSCPVCRRDV 213 (213)
Q Consensus 163 ~~~~~C~ICle~~~~-ge~v~---~Lp~C~H~FH~~CI~~WL~~~-----------~sCPlCR~~v 213 (213)
+...+|+||++.+.+ ++.+. ..++|+|.||..|+.+||++. ++||.||+++
T Consensus 306 e~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pI 371 (381)
T 3k1l_B 306 NEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKL 371 (381)
T ss_dssp CSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEE
T ss_pred cCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcC
Confidence 567889999999887 43332 244699999999999999853 4799999874
No 52
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.05 E-value=3.8e-11 Score=79.05 Aligned_cols=44 Identities=27% Similarity=0.616 Sum_probs=37.7
Q ss_pred CCCCcccccccccccCceeeecCCCCCcccHhhHHHHHhcCCCCcccCCCC
Q 028116 163 TQSSCCSICLQDIIVGELARSLPHCHHTFHLACVDKWLIRHGSCPVCRRDV 213 (213)
Q Consensus 163 ~~~~~C~ICle~~~~ge~v~~Lp~C~H~FH~~CI~~WL~~~~sCPlCR~~v 213 (213)
.+...|+||++.|.. +..+| |+|.||..||.+| +.+||+||+++
T Consensus 4 ~~~~~C~IC~~~~~~---p~~l~-CgH~fC~~Ci~~~---~~~CP~Cr~~~ 47 (56)
T 1bor_A 4 FQFLRCQQCQAEAKC---PKLLP-CLHTLCSGCLEAS---GMQCPICQAPW 47 (56)
T ss_dssp CCCSSCSSSCSSCBC---CSCST-TSCCSBTTTCSSS---SSSCSSCCSSS
T ss_pred ccCCCceEeCCccCC---eEEcC-CCCcccHHHHccC---CCCCCcCCcEe
Confidence 456789999999876 57788 9999999999884 67899999874
No 53
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.05 E-value=8.5e-11 Score=86.60 Aligned_cols=47 Identities=11% Similarity=0.088 Sum_probs=42.2
Q ss_pred CCCCcccccccccccCceeeecCCCCCcccHhhHHHHHhcCCCCcccCCCC
Q 028116 163 TQSSCCSICLQDIIVGELARSLPHCHHTFHLACVDKWLIRHGSCPVCRRDV 213 (213)
Q Consensus 163 ~~~~~C~ICle~~~~ge~v~~Lp~C~H~FH~~CI~~WL~~~~sCPlCR~~v 213 (213)
.+...||||++-|.+ +..+| |||.|+..||.+|+..+.+||+||.++
T Consensus 27 p~~~~CpI~~~~m~d---PV~~~-cGhtf~r~~I~~~l~~~~~cP~~~~~l 73 (100)
T 2kre_A 27 PDEFRDPLMDTLMTD---PVRLP-SGTIMDRSIILRHLLNSPTDPFNRQTL 73 (100)
T ss_dssp STTTBCTTTCSBCSS---EEEET-TTEEEEHHHHHHHTTSCSBCSSSCCBC
T ss_pred cHhhCCcCccCcccC---CeECC-CCCEEchHHHHHHHHcCCCCCCCCCCC
Confidence 456889999999887 77888 999999999999999999999999874
No 54
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=99.03 E-value=5.3e-11 Score=92.85 Aligned_cols=46 Identities=20% Similarity=0.449 Sum_probs=39.2
Q ss_pred CCCCcccccccccccCceeeecCCCCCcccHhhHHHHHhcCC-CCcccCCC
Q 028116 163 TQSSCCSICLQDIIVGELARSLPHCHHTFHLACVDKWLIRHG-SCPVCRRD 212 (213)
Q Consensus 163 ~~~~~C~ICle~~~~ge~v~~Lp~C~H~FH~~CI~~WL~~~~-sCPlCR~~ 212 (213)
+++..|+||++.+.+ +..++ |||.||..||.+|+.... +||+||.+
T Consensus 29 ~~~~~C~IC~~~~~~---pv~~~-CgH~FC~~Ci~~~~~~~~~~CP~Cr~~ 75 (141)
T 3knv_A 29 EAKYLCSACRNVLRR---PFQAQ-CGHRYCSFCLASILSSGPQNCAACVHE 75 (141)
T ss_dssp CGGGBCTTTCSBCSS---EEECT-TSCEEEHHHHHHHGGGSCEECHHHHHT
T ss_pred CcCcCCCCCChhhcC---cEECC-CCCccCHHHHHHHHhcCCCCCCCCCCc
Confidence 456889999999876 34577 999999999999998765 89999985
No 55
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=99.03 E-value=1.4e-10 Score=85.10 Aligned_cols=47 Identities=15% Similarity=0.128 Sum_probs=41.8
Q ss_pred CCCCcccccccccccCceeeecCCCC-CcccHhhHHHHHhcCCCCcccCCCC
Q 028116 163 TQSSCCSICLQDIIVGELARSLPHCH-HTFHLACVDKWLIRHGSCPVCRRDV 213 (213)
Q Consensus 163 ~~~~~C~ICle~~~~ge~v~~Lp~C~-H~FH~~CI~~WL~~~~sCPlCR~~v 213 (213)
.++..||||++-|++ +..+| || |.|+..||.+|+..+.+||+||.++
T Consensus 20 p~~~~CpI~~~~m~d---PV~~~-cG~htf~r~cI~~~l~~~~~cP~~~~~l 67 (98)
T 1wgm_A 20 CDEFLDPIMSTLMCD---PVVLP-SSRVTVDRSTIARHLLSDQTDPFNRSPL 67 (98)
T ss_dssp CTTTBCTTTCSBCSS---EEECT-TTCCEEEHHHHHHHTTTSCBCTTTCSBC
T ss_pred cHhcCCcCccccccC---CeECC-CCCeEECHHHHHHHHHhCCCCCCCCCCC
Confidence 456889999999887 66788 99 9999999999999999999999874
No 56
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=99.00 E-value=1.8e-10 Score=81.12 Aligned_cols=50 Identities=18% Similarity=0.545 Sum_probs=38.7
Q ss_pred CCCCcccccccccccCce-eeecCCCCCcccHhhHHHHHhc-CCCCcccCCCC
Q 028116 163 TQSSCCSICLQDIIVGEL-ARSLPHCHHTFHLACVDKWLIR-HGSCPVCRRDV 213 (213)
Q Consensus 163 ~~~~~C~ICle~~~~ge~-v~~Lp~C~H~FH~~CI~~WL~~-~~sCPlCR~~v 213 (213)
+++.+|+||++.+...+. +.-++ |||.||..|+.+|+.. +.+||.||+++
T Consensus 9 ~~~~~CpICle~~~~~d~~~~p~~-CGH~fC~~Cl~~~~~~~~~~CP~CR~~~ 60 (78)
T 1e4u_A 9 EDPVECPLCMEPLEIDDINFFPCT-CGYQICRFCWHRIRTDENGLCPACRKPY 60 (78)
T ss_dssp CCCCBCTTTCCBCCTTTTTCCSST-TSCCCCHHHHHHHTTSSCSBCTTTCCBC
T ss_pred ccCCcCCccCccCccccccccccC-CCCCcCHHHHHHHHhcCCCCCCCCCCcc
Confidence 456889999998865432 22245 9999999999998753 57899999864
No 57
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.00 E-value=5.6e-11 Score=89.41 Aligned_cols=44 Identities=30% Similarity=0.586 Sum_probs=38.0
Q ss_pred CCCcccccccccccCceeeec-CCCCCcccHhhHHHHHhcCCCCcccCCCC
Q 028116 164 QSSCCSICLQDIIVGELARSL-PHCHHTFHLACVDKWLIRHGSCPVCRRDV 213 (213)
Q Consensus 164 ~~~~C~ICle~~~~ge~v~~L-p~C~H~FH~~CI~~WL~~~~sCPlCR~~v 213 (213)
+...|+||++.|.. +..+ | |||.||..||.+|+. .+||+||+++
T Consensus 21 ~~~~C~IC~~~~~~---pv~~~~-CgH~fC~~Ci~~~~~--~~CP~Cr~~~ 65 (117)
T 1jm7_B 21 KLLRCSRCTNILRE---PVCLGG-CEHIFCSNCVSDCIG--TGCPVCYTPA 65 (117)
T ss_dssp HTTSCSSSCSCCSS---CBCCCS-SSCCBCTTTGGGGTT--TBCSSSCCBC
T ss_pred hCCCCCCCChHhhC---ccEeCC-CCCHHHHHHHHHHhc--CCCcCCCCcC
Confidence 46889999999865 5566 7 999999999999988 8899999864
No 58
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.99 E-value=7.6e-11 Score=81.93 Aligned_cols=42 Identities=26% Similarity=0.691 Sum_probs=36.5
Q ss_pred CCCcccccccccccCceeeecCCCCCc-ccHhhHHHHHhcCCCCcccCCCC
Q 028116 164 QSSCCSICLQDIIVGELARSLPHCHHT-FHLACVDKWLIRHGSCPVCRRDV 213 (213)
Q Consensus 164 ~~~~C~ICle~~~~ge~v~~Lp~C~H~-FH~~CI~~WL~~~~sCPlCR~~v 213 (213)
++..|+||++.+.+ +..+| |||. ||..|+.+| .+||+||+++
T Consensus 23 ~~~~C~iC~~~~~~---~~~~p-CgH~~~C~~C~~~~----~~CP~Cr~~i 65 (74)
T 4ic3_A 23 EEKLCKICMDRNIA---IVFVP-CGHLVTCKQCAEAV----DKCPMCYTVI 65 (74)
T ss_dssp HHTBCTTTSSSBCC---EEEET-TCCBCCCHHHHTTC----SBCTTTCCBC
T ss_pred cCCCCCCCCCCCCC---EEEcC-CCChhHHHHhhhcC----ccCCCcCcCc
Confidence 45789999998765 66788 9999 999999999 8899999875
No 59
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=98.90 E-value=8.7e-10 Score=73.88 Aligned_cols=47 Identities=23% Similarity=0.645 Sum_probs=36.7
Q ss_pred CCCCcccccccccccCceeeecCCCC--C---cccHhhHHHHHhc--CCCCcccCCCC
Q 028116 163 TQSSCCSICLQDIIVGELARSLPHCH--H---TFHLACVDKWLIR--HGSCPVCRRDV 213 (213)
Q Consensus 163 ~~~~~C~ICle~~~~ge~v~~Lp~C~--H---~FH~~CI~~WL~~--~~sCPlCR~~v 213 (213)
++...|.||+++. ++.. .+| |. | .||..|+++|+.. +.+||+||.+.
T Consensus 4 ~~~~~CrIC~~~~--~~~l-~~P-C~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~ 57 (60)
T 1vyx_A 4 EDVPVCWICNEEL--GNER-FRA-CGCTGELENVHRSCLSTWLTISRNTACQICGVVY 57 (60)
T ss_dssp CSCCEETTTTEEC--SCCC-CCS-CCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBC
T ss_pred CCCCEeEEeecCC--CCce-ecC-cCCCCchhhhHHHHHHHHHHhCCCCccCCCCCee
Confidence 4567899999973 3333 688 55 4 9999999999975 67899999863
No 60
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.88 E-value=6.8e-10 Score=88.44 Aligned_cols=47 Identities=34% Similarity=0.620 Sum_probs=40.0
Q ss_pred CCCCcccccccccccCceeeecCCCCCcccHhhHHHHHhcCC-CCcccCCCC
Q 028116 163 TQSSCCSICLQDIIVGELARSLPHCHHTFHLACVDKWLIRHG-SCPVCRRDV 213 (213)
Q Consensus 163 ~~~~~C~ICle~~~~ge~v~~Lp~C~H~FH~~CI~~WL~~~~-sCPlCR~~v 213 (213)
.+...|+||++.+.+ +..+| |||.||..||.+|+..+. +||+||.++
T Consensus 16 ~~~~~C~IC~~~~~~---pv~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~ 63 (170)
T 3hcs_A 16 ESKYECPICLMALRE---AVQTP-CGHRFCKACIIKSIRDAGHKCPVDNEIL 63 (170)
T ss_dssp CGGGBCTTTCSBCSS---EEECT-TSCEEEHHHHHHHHHHHCSBCTTTCCBC
T ss_pred CCCCCCCCCChhhcC---cEECC-CCCHHHHHHHHHHHHhCCCCCCCCccCc
Confidence 456889999999876 45577 999999999999998654 999999874
No 61
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.88 E-value=1e-09 Score=92.78 Aligned_cols=47 Identities=21% Similarity=0.278 Sum_probs=40.7
Q ss_pred CCCCcccccccccccCceeeecCCCCCcccHhhHHHHHhcCC-CCcccCCCC
Q 028116 163 TQSSCCSICLQDIIVGELARSLPHCHHTFHLACVDKWLIRHG-SCPVCRRDV 213 (213)
Q Consensus 163 ~~~~~C~ICle~~~~ge~v~~Lp~C~H~FH~~CI~~WL~~~~-sCPlCR~~v 213 (213)
.....||||++-|.+ +.++| |||+|+..||.+|+..++ +||+||.++
T Consensus 206 ~~~~~c~i~~~~~~d---Pv~~~-~gh~f~~~~i~~~~~~~~~~cP~~~~~~ 253 (281)
T 2c2l_A 206 PDYLCGKISFELMRE---PCITP-SGITYDRKDIEEHLQRVGHFNPVTRSPL 253 (281)
T ss_dssp CSTTBCTTTCSBCSS---EEECS-SCCEEETTHHHHHHHHTCSSCTTTCCCC
T ss_pred CcccCCcCcCCHhcC---CeECC-CCCEECHHHHHHHHHHCCCCCcCCCCCC
Confidence 467889999999876 67888 999999999999998744 599999875
No 62
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.86 E-value=9.8e-10 Score=79.72 Aligned_cols=47 Identities=17% Similarity=0.427 Sum_probs=38.9
Q ss_pred CCCCcccccccccccCceeeecCCCCCcccHhhHHHHHhcC------CCCcc--cCCC
Q 028116 163 TQSSCCSICLQDIIVGELARSLPHCHHTFHLACVDKWLIRH------GSCPV--CRRD 212 (213)
Q Consensus 163 ~~~~~C~ICle~~~~ge~v~~Lp~C~H~FH~~CI~~WL~~~------~sCPl--CR~~ 212 (213)
..+..||||++.|.+ +..+|.|||.|+..||.+|+..+ .+||+ |++.
T Consensus 5 ~~~~~CPI~~~~~~d---PV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~ 59 (94)
T 2yu4_A 5 SSGFTCPITKEEMKK---PVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHT 59 (94)
T ss_dssp SSCCBCTTTCSBCSS---EEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred CcEeECcCcCchhcC---CEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence 346789999999876 66675699999999999999864 48999 9854
No 63
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.84 E-value=2.3e-09 Score=73.43 Aligned_cols=43 Identities=35% Similarity=0.742 Sum_probs=36.6
Q ss_pred CCCCcccccccccccCceeeecCCCCCc-ccHhhHHHHHhcCCCCcccCCCC
Q 028116 163 TQSSCCSICLQDIIVGELARSLPHCHHT-FHLACVDKWLIRHGSCPVCRRDV 213 (213)
Q Consensus 163 ~~~~~C~ICle~~~~ge~v~~Lp~C~H~-FH~~CI~~WL~~~~sCPlCR~~v 213 (213)
.++..|.||++.... +..+| |+|. |+..|+.. ..+||+||+++
T Consensus 13 ~~~~~C~IC~~~~~~---~v~~p-CgH~~~C~~C~~~----~~~CP~CR~~i 56 (68)
T 2ea5_A 13 ENSKDCVVCQNGTVN---WVLLP-CRHTCLCDGCVKY----FQQCPMCRQFV 56 (68)
T ss_dssp CCSSCCSSSSSSCCC---CEETT-TTBCCSCTTHHHH----CSSCTTTCCCC
T ss_pred CCCCCCCCcCcCCCC---EEEEC-CCChhhhHHHHhc----CCCCCCCCcch
Confidence 557889999998654 77899 9999 99999984 68999999875
No 64
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.83 E-value=1.2e-09 Score=75.77 Aligned_cols=42 Identities=26% Similarity=0.695 Sum_probs=35.0
Q ss_pred CCCcccccccccccCceeeecCCCCCc-ccHhhHHHHHhcCCCCcccCCCC
Q 028116 164 QSSCCSICLQDIIVGELARSLPHCHHT-FHLACVDKWLIRHGSCPVCRRDV 213 (213)
Q Consensus 164 ~~~~C~ICle~~~~ge~v~~Lp~C~H~-FH~~CI~~WL~~~~sCPlCR~~v 213 (213)
++..|+||++.+.+ +..+| |+|. ||..|+.+ ...||+||+++
T Consensus 24 ~~~~C~IC~~~~~~---~~~~p-CgH~~~C~~C~~~----~~~CP~Cr~~i 66 (75)
T 2ecg_A 24 EEKLCKICMDRNIA---IVFVP-CGHLVTCKQCAEA----VDKCPMCYTVI 66 (75)
T ss_dssp HHHSCSSSCSSCCC---BCCSS-SCCCCBCHHHHHH----CSBCTTTCCBC
T ss_pred CCCCCCcCCCCCCC---EEEec-CCCHHHHHHHhhC----CCCCccCCcee
Confidence 35789999998765 66788 9999 99999964 58899999875
No 65
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.74 E-value=4.4e-09 Score=75.94 Aligned_cols=48 Identities=27% Similarity=0.636 Sum_probs=39.6
Q ss_pred CCCcccccccccccCceeeecCCCCCcccHhhHHHHHhc--------CCCCcc--cCCC
Q 028116 164 QSSCCSICLQDIIVGELARSLPHCHHTFHLACVDKWLIR--------HGSCPV--CRRD 212 (213)
Q Consensus 164 ~~~~C~ICle~~~~ge~v~~Lp~C~H~FH~~CI~~WL~~--------~~sCPl--CR~~ 212 (213)
+..+|+||++++...+.+...+ |+|.||..|+.+++.. .-+||. ||..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~-CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQ-CQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETT-TTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CCcCCcccCcccccccceEcCC-CCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 4578999999998766666566 9999999999999863 237999 9976
No 66
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.73 E-value=2e-09 Score=75.76 Aligned_cols=42 Identities=36% Similarity=0.797 Sum_probs=35.6
Q ss_pred CCCcccccccccccCceeeecCCCCCc-ccHhhHHHHHhcCCCCcccCCCC
Q 028116 164 QSSCCSICLQDIIVGELARSLPHCHHT-FHLACVDKWLIRHGSCPVCRRDV 213 (213)
Q Consensus 164 ~~~~C~ICle~~~~ge~v~~Lp~C~H~-FH~~CI~~WL~~~~sCPlCR~~v 213 (213)
++..|+||++.+.. +..+| |||. |+..|+.+| ..||+||+++
T Consensus 17 ~~~~C~IC~~~~~~---~v~~p-CgH~~~C~~C~~~~----~~CP~Cr~~i 59 (79)
T 2yho_A 17 EAMLCMVCCEEEIN---STFCP-CGHTVCCESCAAQL----QSCPVCRSRV 59 (79)
T ss_dssp HHTBCTTTSSSBCC---EEEET-TCBCCBCHHHHTTC----SBCTTTCCBC
T ss_pred CCCEeEEeCcccCc---EEEEC-CCCHHHHHHHHHhc----CcCCCCCchh
Confidence 35789999998655 67888 9999 999999987 3999999875
No 67
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.70 E-value=8.6e-09 Score=83.46 Aligned_cols=47 Identities=19% Similarity=0.212 Sum_probs=40.6
Q ss_pred CCCCcccccccccccCceeeecCCCCCcccHhhHHHHHhcC-CCCcccCCCC
Q 028116 163 TQSSCCSICLQDIIVGELARSLPHCHHTFHLACVDKWLIRH-GSCPVCRRDV 213 (213)
Q Consensus 163 ~~~~~C~ICle~~~~ge~v~~Lp~C~H~FH~~CI~~WL~~~-~sCPlCR~~v 213 (213)
.+...||||++-|.+ +..+| |||.|+..||.+|+..+ .+||+||.++
T Consensus 104 p~~f~CPI~~elm~D---PV~~~-~Ghtfer~~I~~~l~~~~~tcP~t~~~l 151 (179)
T 2f42_A 104 PDYLCGKISFELMRE---PCITP-SGITYDRKDIEEHLQRVGHFDPVTRSPL 151 (179)
T ss_dssp CGGGBCTTTCSBCSS---EEECT-TSCEEEHHHHHHHHHHTCSBCTTTCCBC
T ss_pred cHhhcccCccccCCC---CeECC-CCCEECHHHHHHHHHhCCCCCCCCcCCC
Confidence 567889999999886 66778 99999999999999875 4699999874
No 68
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.57 E-value=2.5e-08 Score=66.83 Aligned_cols=45 Identities=13% Similarity=0.250 Sum_probs=38.8
Q ss_pred CcccccccccccCceeeecCCCCCcccHhhHHHHHhcCCCCcccCCCC
Q 028116 166 SCCSICLQDIIVGELARSLPHCHHTFHLACVDKWLIRHGSCPVCRRDV 213 (213)
Q Consensus 166 ~~C~ICle~~~~ge~v~~Lp~C~H~FH~~CI~~WL~~~~sCPlCR~~v 213 (213)
..|+||++-+.+ +..+|.|||+|...||.+||+++.+||++++++
T Consensus 4 ~~CpIs~~~m~d---PV~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L 48 (61)
T 2bay_A 4 MLCAISGKVPRR---PVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPL 48 (61)
T ss_dssp CCCTTTCSCCSS---EEEETTTTEEEEHHHHHHHHHHHSBCTTTCCBC
T ss_pred EEecCCCCCCCC---CEEeCCCCcEEcHHHHHHHHHhCCCCcCCcCCC
Confidence 579999999885 456633999999999999999999999999864
No 69
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.56 E-value=1.3e-08 Score=90.14 Aligned_cols=43 Identities=23% Similarity=0.735 Sum_probs=37.2
Q ss_pred CCCCcccccccccccCceeeecCCCCCc-ccHhhHHHHHhcCCCCcccCCCC
Q 028116 163 TQSSCCSICLQDIIVGELARSLPHCHHT-FHLACVDKWLIRHGSCPVCRRDV 213 (213)
Q Consensus 163 ~~~~~C~ICle~~~~ge~v~~Lp~C~H~-FH~~CI~~WL~~~~sCPlCR~~v 213 (213)
.++..|+||++.+.. +..+| |||. ||..|+.+| ..||+||.++
T Consensus 293 ~~~~~C~IC~~~~~~---~v~lp-CgH~~fC~~C~~~~----~~CP~CR~~i 336 (345)
T 3t6p_A 293 QEERTCKVCMDKEVS---VVFIP-CGHLVVCQECAPSL----RKCPICRGII 336 (345)
T ss_dssp HTTCBCTTTSSSBCC---EEEET-TCCEEECTTTGGGC----SBCTTTCCBC
T ss_pred cCCCCCCccCCcCCc---eEEcC-CCChhHhHHHHhcC----CcCCCCCCCc
Confidence 356889999998765 66788 9999 999999988 7899999875
No 70
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.38 E-value=1e-07 Score=81.24 Aligned_cols=47 Identities=21% Similarity=0.406 Sum_probs=37.9
Q ss_pred CCCCcccccccccccCceeeecCCCCCcccHhhHHHHHhcC--CCCcc--cCCC
Q 028116 163 TQSSCCSICLQDIIVGELARSLPHCHHTFHLACVDKWLIRH--GSCPV--CRRD 212 (213)
Q Consensus 163 ~~~~~C~ICle~~~~ge~v~~Lp~C~H~FH~~CI~~WL~~~--~sCPl--CR~~ 212 (213)
..+..||||++.|.+ .|+... |||.|+..||.+|+..+ .+||+ ||+.
T Consensus 179 ~~el~CPIcl~~f~D--PVts~~-CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~ 229 (267)
T 3htk_C 179 KIELTCPITCKPYEA--PLISRK-CNHVFDRDGIQNYLQGYTTRDCPQAACSQV 229 (267)
T ss_dssp BCCSBCTTTSSBCSS--EEEESS-SCCEEEHHHHHHHSTTCSCEECSGGGCSCE
T ss_pred ceeeECcCccCcccC--CeeeCC-CCCcccHHHHHHHHHhCCCCCCCcccccCc
Confidence 356779999999865 344445 99999999999999865 47999 9975
No 71
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=98.36 E-value=2.6e-07 Score=67.52 Aligned_cols=44 Identities=30% Similarity=0.619 Sum_probs=36.2
Q ss_pred cccccccccccCceeeecCCCCCcccHhhHHHHHhc-CCCCcccCCCC
Q 028116 167 CCSICLQDIIVGELARSLPHCHHTFHLACVDKWLIR-HGSCPVCRRDV 213 (213)
Q Consensus 167 ~C~ICle~~~~ge~v~~Lp~C~H~FH~~CI~~WL~~-~~sCPlCR~~v 213 (213)
-|++|--.+. ...|..| |+|.|+.+|+..|.++ .++||+||.+|
T Consensus 3 fC~~C~~Pi~--iygRmIP-CkHvFCydCa~~~~~~~~k~Cp~C~~~V 47 (101)
T 3vk6_A 3 FCDKCGLPIK--VYGRMIP-CKHVFCYDCAILHEKKGDKMCPGCSDPV 47 (101)
T ss_dssp BCTTTCSBCS--EEEEEET-TCCEEEHHHHHHHHHTTCCBCTTTCCBC
T ss_pred ecCccCCCeE--EEeeecc-ccccHHHHHHHHHHhccCCCCcCcCCee
Confidence 4788855544 4678999 9999999999999865 67899999875
No 72
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=98.07 E-value=2.4e-06 Score=71.93 Aligned_cols=46 Identities=33% Similarity=0.727 Sum_probs=38.1
Q ss_pred CCCcccccccccccCceeeecCCCCCcccHhhHHHHHhcCC--CCcccCCC
Q 028116 164 QSSCCSICLQDIIVGELARSLPHCHHTFHLACVDKWLIRHG--SCPVCRRD 212 (213)
Q Consensus 164 ~~~~C~ICle~~~~ge~v~~Lp~C~H~FH~~CI~~WL~~~~--sCPlCR~~ 212 (213)
....|.||.+-...| . ..|+|+|.||..|+.+|++++. +||.|+.+
T Consensus 179 ~i~~C~iC~~iv~~g--~-~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~ 226 (238)
T 3nw0_A 179 AVKICNICHSLLIQG--Q-SCETCGIRMHLPCVAKYFQSNAEPRCPHCNDY 226 (238)
T ss_dssp TCCBCTTTCSBCSSC--E-ECSSSCCEECHHHHHHHTTTCSSCBCTTTCCB
T ss_pred CCCcCcchhhHHhCC--c-ccCccChHHHHHHHHHHHHhCCCCCCCCCCCC
Confidence 468899999988775 3 3445999999999999998755 89999874
No 73
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=95.87 E-value=0.0047 Score=41.56 Aligned_cols=46 Identities=24% Similarity=0.525 Sum_probs=34.6
Q ss_pred CCCCcccccccccccCceeeecCCCCCcccHhhHHHHHhcCC----CCcccCCC
Q 028116 163 TQSSCCSICLQDIIVGELARSLPHCHHTFHLACVDKWLIRHG----SCPVCRRD 212 (213)
Q Consensus 163 ~~~~~C~ICle~~~~ge~v~~Lp~C~H~FH~~CI~~WL~~~~----sCPlCR~~ 212 (213)
.....|.||.+ .++.+.-- .|...||..|++..|.... .||.|+..
T Consensus 10 ~~~~~C~vC~~---~~~ll~Cd-~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~ 59 (66)
T 2lri_C 10 APGARCGVCGD---GTDVLRCT-HCAAAFHWRCHFPAGTSRPGTGLRCRSCSGD 59 (66)
T ss_dssp CTTCCCTTTSC---CTTCEECS-SSCCEECHHHHCTTTCCCCSSSCCCTTTTTC
T ss_pred CCCCCcCCCCC---CCeEEECC-CCCCceecccCCCccCcCCCCCEECccccCC
Confidence 45678999975 34545444 5999999999998887543 69999763
No 74
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=95.54 E-value=0.0033 Score=45.16 Aligned_cols=45 Identities=20% Similarity=0.472 Sum_probs=35.5
Q ss_pred CCCcccccccccccCceeeecCCCCCcccHhhHHHHHhcCCCCcccCCCC
Q 028116 164 QSSCCSICLQDIIVGELARSLPHCHHTFHLACVDKWLIRHGSCPVCRRDV 213 (213)
Q Consensus 164 ~~~~C~ICle~~~~ge~v~~Lp~C~H~FH~~CI~~WL~~~~sCPlCR~~v 213 (213)
...-|..|+.+.+. ...-..|++|..|+...|.....||+|.+++
T Consensus 27 G~~nCKsCWf~~k~-----LV~C~dHYLCl~CLtlmL~~SdrCpIC~~pL 71 (99)
T 2ko5_A 27 GPQFCKSCWFENKG-----LVECNNHYLCLNCLTLLLSVSNRCPICKMPL 71 (99)
T ss_dssp CCCCCCSSCSCCSS-----EEECSSCEEEHHHHHHTCSSSSEETTTTEEC
T ss_pred CcccChhhccccCC-----eeeecchhhHHHHHHHHHhhccCCcccCCcC
Confidence 44679999887553 2222469999999999999999999999864
No 75
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=95.39 E-value=0.0082 Score=42.93 Aligned_cols=36 Identities=17% Similarity=0.434 Sum_probs=26.9
Q ss_pred CCCcccccccccccCceeeecCCCCCcccHhhHHH-HH
Q 028116 164 QSSCCSICLQDIIVGELARSLPHCHHTFHLACVDK-WL 200 (213)
Q Consensus 164 ~~~~C~ICle~~~~ge~v~~Lp~C~H~FH~~CI~~-WL 200 (213)
++..|+||++++...-...-++ |+|.|+..|+.. |-
T Consensus 2 ee~~C~~C~~~~~~~av~~C~~-C~~~~C~~Cl~~~h~ 38 (101)
T 2jun_A 2 EKVLCQFCDQDPAQDAVKTCVT-CEVSYCDECLKATHP 38 (101)
T ss_dssp CCCBCTTCCSSSCCBCCEEETT-TTEEECHHHHHHHSC
T ss_pred CCCCCcCCCCCCCCCceEECCc-CChHHhHHHCHHHhc
Confidence 3578999998754433334476 999999999998 53
No 76
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=95.31 E-value=0.0037 Score=41.44 Aligned_cols=49 Identities=24% Similarity=0.448 Sum_probs=34.8
Q ss_pred CCCCcccccccccccCceeeecCCCCCcccHhhHHHHHh-----cCCCCcccCC
Q 028116 163 TQSSCCSICLQDIIVGELARSLPHCHHTFHLACVDKWLI-----RHGSCPVCRR 211 (213)
Q Consensus 163 ~~~~~C~ICle~~~~ge~v~~Lp~C~H~FH~~CI~~WL~-----~~~sCPlCR~ 211 (213)
++...|+||.+.+.+++....--.|...||..|+.--.. ..-.||.|+.
T Consensus 4 ~e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~ 57 (64)
T 1we9_A 4 GSSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSN 57 (64)
T ss_dssp SSCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHT
T ss_pred CCCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcC
Confidence 456779999998865544444446999999999864321 3457999975
No 77
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=94.78 E-value=0.026 Score=39.71 Aligned_cols=35 Identities=20% Similarity=0.502 Sum_probs=26.0
Q ss_pred CCCCcccccccccccCceeeecCCCCCcccHhhHHHH
Q 028116 163 TQSSCCSICLQDIIVGELARSLPHCHHTFHLACVDKW 199 (213)
Q Consensus 163 ~~~~~C~ICle~~~~ge~v~~Lp~C~H~FH~~CI~~W 199 (213)
..++.|.||-. |..++....- -|+-.||..|+.+-
T Consensus 13 ~~D~~C~VC~~-~t~~~l~pCR-vC~RvfH~~CL~r~ 47 (89)
T 1wil_A 13 VNDEMCDVCEV-WTAESLFPCR-VCTRVFHDGCLRRM 47 (89)
T ss_dssp CCSCCCTTTCC-CCSSCCSSCS-SSSSCCCHHHHHHH
T ss_pred CCCcccCcccc-ccccceeccc-cccccccHhhcccc
Confidence 56899999953 5555544333 39999999999986
No 78
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=93.45 E-value=0.038 Score=36.28 Aligned_cols=46 Identities=28% Similarity=0.776 Sum_probs=33.6
Q ss_pred CCCCcccccccccccCceeeecCCCCCcccHhhHHHHHhcC----CCCcccCCC
Q 028116 163 TQSSCCSICLQDIIVGELARSLPHCHHTFHLACVDKWLIRH----GSCPVCRRD 212 (213)
Q Consensus 163 ~~~~~C~ICle~~~~ge~v~~Lp~C~H~FH~~CI~~WL~~~----~sCPlCR~~ 212 (213)
..+..|.||.+. ++.+.-- .|...||..|++.=+... =.||.|++.
T Consensus 9 ~~~~~C~vC~~~---g~ll~CD-~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~~ 58 (61)
T 2l5u_A 9 DHQDYCEVCQQG---GEIILCD-TCPRAYHMVCLDPDMEKAPEGKWSCPHCEKE 58 (61)
T ss_dssp CCCSSCTTTSCC---SSEEECS-SSSCEEEHHHHCTTCCSCCCSSCCCTTGGGG
T ss_pred CCCCCCccCCCC---CcEEECC-CCChhhhhhccCCCCCCCCCCceECcccccc
Confidence 567889999873 4545444 599999999999765432 269999763
No 79
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=91.96 E-value=0.064 Score=33.62 Aligned_cols=45 Identities=27% Similarity=0.602 Sum_probs=31.2
Q ss_pred cccccccccccCceeeecCCCCCcccHhhHHHHHhcCC----CCcccCCC
Q 028116 167 CCSICLQDIIVGELARSLPHCHHTFHLACVDKWLIRHG----SCPVCRRD 212 (213)
Q Consensus 167 ~C~ICle~~~~ge~v~~Lp~C~H~FH~~CI~~WL~~~~----sCPlCR~~ 212 (213)
.|.||.+.-..++.+.-- .|...||..|+++=|.+.+ .||.|+..
T Consensus 2 ~C~vC~~~~~~~~ll~Cd-~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~~ 50 (51)
T 1f62_A 2 RCKVCRKKGEDDKLILCD-ECNKAFHLFCLRPALYEVPDGEWQCPACQPA 50 (51)
T ss_dssp CCTTTCCSSCCSCCEECT-TTCCEECHHHHCTTCCSCCSSCCSCTTTSCC
T ss_pred CCCCCCCCCCCCCEEECC-CCChhhCcccCCCCcCCCCCCcEECcCcccc
Confidence 589998764444444444 5999999999976444322 59999863
No 80
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=91.93 E-value=0.052 Score=34.41 Aligned_cols=45 Identities=18% Similarity=0.183 Sum_probs=31.7
Q ss_pred CcccccccccccCceeeecC-CCCCcccHhhHHHH----HhcCCCCcccC
Q 028116 166 SCCSICLQDIIVGELARSLP-HCHHTFHLACVDKW----LIRHGSCPVCR 210 (213)
Q Consensus 166 ~~C~ICle~~~~ge~v~~Lp-~C~H~FH~~CI~~W----L~~~~sCPlCR 210 (213)
-.|.+|.+.+.+++....-- .|...||..|+.-- ...+-.||.||
T Consensus 3 c~cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 3 CAAQNCQRPCKDKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp CSCTTCCCCCCTTCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred ccCCCCcCccCCCCcEEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence 36899999987665554444 59999999997521 12566899996
No 81
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=91.79 E-value=0.12 Score=34.51 Aligned_cols=49 Identities=22% Similarity=0.395 Sum_probs=33.3
Q ss_pred CCCCcccccccccccCceeeecC-CCCCcccHhhHHHH------Hhc----CCCCcccCC
Q 028116 163 TQSSCCSICLQDIIVGELARSLP-HCHHTFHLACVDKW------LIR----HGSCPVCRR 211 (213)
Q Consensus 163 ~~~~~C~ICle~~~~ge~v~~Lp-~C~H~FH~~CI~~W------L~~----~~sCPlCR~ 211 (213)
+....|++|.+.+.+++....-- .|.-.||..|+.-= |.. +-.||.|++
T Consensus 6 ~~~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cvglt~~~~~~l~~e~~~~w~C~~C~~ 65 (65)
T 2vpb_A 6 DPVYPCGICTNEVNDDQDAILCEASCQKWFHRICTGMTETAYGLLTAEASAVWGCDTCMA 65 (65)
T ss_dssp ---CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHHTCCHHHHHHHHHCTTEEECCHHHHC
T ss_pred CCcCcCccCCCccCCCCCeEecccCccccCchhccCCCHHHHHHhhccCCCcEECcCccC
Confidence 45678999999988776665555 69999999997411 111 346998863
No 82
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=91.78 E-value=0.036 Score=36.42 Aligned_cols=46 Identities=26% Similarity=0.602 Sum_probs=32.9
Q ss_pred CCCCcccccccccccCceeeecCCCCCcccHhhHHHHHhcCC----CCcccCCC
Q 028116 163 TQSSCCSICLQDIIVGELARSLPHCHHTFHLACVDKWLIRHG----SCPVCRRD 212 (213)
Q Consensus 163 ~~~~~C~ICle~~~~ge~v~~Lp~C~H~FH~~CI~~WL~~~~----sCPlCR~~ 212 (213)
.++..|.||.+ .++.+.-- .|...||..|+..=|.... .||.|+..
T Consensus 7 ~~~~~C~vC~~---~g~ll~Cd-~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~ 56 (61)
T 1mm2_A 7 HHMEFCRVCKD---GGELLCCD-TCPSSYHIHCLNPPLPEIPNGEWLCPRCTCP 56 (61)
T ss_dssp SSCSSCTTTCC---CSSCBCCS-SSCCCBCSSSSSSCCSSCCSSCCCCTTTTTT
T ss_pred CCCCcCCCCCC---CCCEEEcC-CCCHHHcccccCCCcCcCCCCccCChhhcCc
Confidence 56788999986 34444444 5999999999986554322 59999864
No 83
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=91.56 E-value=0.028 Score=36.23 Aligned_cols=45 Identities=31% Similarity=0.728 Sum_probs=33.0
Q ss_pred CCCCcccccccccccCceeeecCCCCCcccHhhHHHHHhcCC----CCcccCC
Q 028116 163 TQSSCCSICLQDIIVGELARSLPHCHHTFHLACVDKWLIRHG----SCPVCRR 211 (213)
Q Consensus 163 ~~~~~C~ICle~~~~ge~v~~Lp~C~H~FH~~CI~~WL~~~~----sCPlCR~ 211 (213)
.++..|.||.+. ++.+.-- .|...||..|+++=|...+ .||.|++
T Consensus 7 ~~~~~C~vC~~~---g~ll~Cd-~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 7 GHEDFCSVCRKS---GQLLMCD-TCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp SSCCSCSSSCCS---SCCEECS-SSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred CCCCCCccCCCC---CeEEEcC-CCCcceECccCCCCcCCCCCCceEChhhhC
Confidence 567889999874 4545444 5999999999986554432 5999975
No 84
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=91.10 E-value=0.13 Score=35.37 Aligned_cols=48 Identities=25% Similarity=0.405 Sum_probs=31.3
Q ss_pred CCCcccccccccccCceeeecCCCCCcccHhhHHHHHh-----cCCCCcccCCC
Q 028116 164 QSSCCSICLQDIIVGELARSLPHCHHTFHLACVDKWLI-----RHGSCPVCRRD 212 (213)
Q Consensus 164 ~~~~C~ICle~~~~ge~v~~Lp~C~H~FH~~CI~~WL~-----~~~sCPlCR~~ 212 (213)
....| ||...+..+.....--.|...||..|+.---. ..-.||.|+..
T Consensus 11 ~~~~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~ 63 (79)
T 1wep_A 11 VPVYC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAV 63 (79)
T ss_dssp CCCCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTT
T ss_pred CccEE-EcCCccCCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCcccc
Confidence 34445 99998764443434345999999999852111 34579999863
No 85
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=90.86 E-value=0.085 Score=35.79 Aligned_cols=48 Identities=23% Similarity=0.401 Sum_probs=33.3
Q ss_pred CCCCcccccccccccCceeeecCCCCCcccHhhHHHHHhc----CCCCcccCC
Q 028116 163 TQSSCCSICLQDIIVGELARSLPHCHHTFHLACVDKWLIR----HGSCPVCRR 211 (213)
Q Consensus 163 ~~~~~C~ICle~~~~ge~v~~Lp~C~H~FH~~CI~~WL~~----~~sCPlCR~ 211 (213)
.+...|.||.+... ++.+..--.|...||..|+..-+.. .-.||.|+.
T Consensus 16 ~~~~~C~~C~~~~~-~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~ 67 (75)
T 2k16_A 16 NQIWICPGCNKPDD-GSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCAN 67 (75)
T ss_dssp CEEECBTTTTBCCS-SCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHH
T ss_pred CCCcCCCCCCCCCC-CCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccC
Confidence 44566999988754 4434444469999999999754432 336999975
No 86
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=90.40 E-value=0.15 Score=36.34 Aligned_cols=44 Identities=34% Similarity=0.793 Sum_probs=28.5
Q ss_pred CCCcccccccccccCceeeecCC--CC-CcccHhhHHHHHhc----CCCCcccCCC
Q 028116 164 QSSCCSICLQDIIVGELARSLPH--CH-HTFHLACVDKWLIR----HGSCPVCRRD 212 (213)
Q Consensus 164 ~~~~C~ICle~~~~ge~v~~Lp~--C~-H~FH~~CI~~WL~~----~~sCPlCR~~ 212 (213)
+...| ||.+... ++.+. --+ |. ..||..|+. |.. +-.||.|+..
T Consensus 35 e~~yC-iC~~~~~-g~MI~-CD~~dC~~~WfH~~CVg--l~~~p~g~W~Cp~C~~~ 85 (91)
T 1weu_A 35 EPTYC-LCHQVSY-GEMIG-CDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQE 85 (91)
T ss_dssp CCBCS-TTCCBCC-SCCCC-CSCSSCSCCCCCSTTTT--CSSCCCSSCCCTTTCCC
T ss_pred CCcEE-ECCCCCC-CCEeE-ecCCCCCCCCEecccCC--cCcCCCCCEECcCccCc
Confidence 34556 9988643 54333 334 55 689999997 443 3369999864
No 87
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=89.96 E-value=0.13 Score=36.47 Aligned_cols=46 Identities=28% Similarity=0.650 Sum_probs=33.7
Q ss_pred CCCCCcccccccccccCceeeecCCCCCcccHhhHHHHHhcCC----CCcccCC
Q 028116 162 PTQSSCCSICLQDIIVGELARSLPHCHHTFHLACVDKWLIRHG----SCPVCRR 211 (213)
Q Consensus 162 ~~~~~~C~ICle~~~~ge~v~~Lp~C~H~FH~~CI~~WL~~~~----sCPlCR~ 211 (213)
+.++..|.+|.+. |+.+..- .|.-.||..|+++=|...+ .||.|+.
T Consensus 22 d~n~~~C~vC~~~---g~LL~CD-~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~ 71 (88)
T 1fp0_A 22 DDSATICRVCQKP---GDLVMCN-QCEFCFHLDCHLPALQDVPGEEWSCSLCHV 71 (88)
T ss_dssp SSSSSCCSSSCSS---SCCEECT-TSSCEECTTSSSTTCCCCCSSSCCCCSCCC
T ss_pred CCCCCcCcCcCCC---CCEEECC-CCCCceecccCCCCCCCCcCCCcCCccccC
Confidence 3667889999864 4544444 5999999999987665432 5999985
No 88
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=89.90 E-value=0.26 Score=34.37 Aligned_cols=41 Identities=17% Similarity=0.446 Sum_probs=33.2
Q ss_pred CCCCcccccccccccCceeeecCCCCCcccHhhHHHHHhcC
Q 028116 163 TQSSCCSICLQDIIVGELARSLPHCHHTFHLACVDKWLIRH 203 (213)
Q Consensus 163 ~~~~~C~ICle~~~~ge~v~~Lp~C~H~FH~~CI~~WL~~~ 203 (213)
.....|.+|.+.+++...|..-..=.|.||.+|-...++++
T Consensus 13 ~a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sIk~q 53 (93)
T 2cs3_A 13 SGPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIKAQ 53 (93)
T ss_dssp CCSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHHHH
T ss_pred CCeeEeecchhhhccCceeeCCCccCCeeeccccHHHHHhc
Confidence 45678999999999987776544457999999999998753
No 89
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=89.71 E-value=0.055 Score=35.26 Aligned_cols=45 Identities=31% Similarity=0.732 Sum_probs=32.3
Q ss_pred CCCCcccccccccccCceeeecCCCCCcccHhhHHHHHhcCC----CCcccCC
Q 028116 163 TQSSCCSICLQDIIVGELARSLPHCHHTFHLACVDKWLIRHG----SCPVCRR 211 (213)
Q Consensus 163 ~~~~~C~ICle~~~~ge~v~~Lp~C~H~FH~~CI~~WL~~~~----sCPlCR~ 211 (213)
.++..|.||.+. ++.+.-- .|...||..|+.+=|...+ .||.|+.
T Consensus 3 ~~~~~C~vC~~~---g~ll~Cd-~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~ 51 (60)
T 2puy_A 3 IHEDFCSVCRKS---GQLLMCD-TCSRVYHLDCLDPPLKTIPKGMWICPRCQD 51 (60)
T ss_dssp CCCSSCTTTCCC---SSCEECS-SSSCEECGGGSSSCCSSCCCSCCCCHHHHH
T ss_pred CCCCCCcCCCCC---CcEEEcC-CCCcCEECCcCCCCcCCCCCCceEChhccC
Confidence 456889999874 5555444 5999999999986554322 5998864
No 90
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=89.59 E-value=0.051 Score=36.17 Aligned_cols=45 Identities=31% Similarity=0.662 Sum_probs=32.4
Q ss_pred CCCCcccccccccccCceeeecCCCCCcccHhhHHHHHhcCC----CCcccCC
Q 028116 163 TQSSCCSICLQDIIVGELARSLPHCHHTFHLACVDKWLIRHG----SCPVCRR 211 (213)
Q Consensus 163 ~~~~~C~ICle~~~~ge~v~~Lp~C~H~FH~~CI~~WL~~~~----sCPlCR~ 211 (213)
.++..|.||.+. ++.+..- .|...||..|+.+=|...+ .||.|+.
T Consensus 6 ~~~~~C~vC~~~---g~ll~CD-~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~ 54 (66)
T 1xwh_A 6 KNEDECAVCRDG---GELICCD-GCPRAFHLACLSPPLREIPSGTWRCSSCLQ 54 (66)
T ss_dssp SCCCSBSSSSCC---SSCEECS-SCCCEECTTTSSSCCSSCCSSCCCCHHHHH
T ss_pred CCCCCCccCCCC---CCEEEcC-CCChhhcccccCCCcCcCCCCCeECccccC
Confidence 567889999864 4544444 5999999999986554322 5999864
No 91
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=89.45 E-value=0.14 Score=34.87 Aligned_cols=46 Identities=28% Similarity=0.417 Sum_probs=31.4
Q ss_pred CCCcccccccccccCceeeecCCCCCcccHhhHHHH------H---hcCCCCcccCC
Q 028116 164 QSSCCSICLQDIIVGELARSLPHCHHTFHLACVDKW------L---IRHGSCPVCRR 211 (213)
Q Consensus 164 ~~~~C~ICle~~~~ge~v~~Lp~C~H~FH~~CI~~W------L---~~~~sCPlCR~ 211 (213)
+...| ||...+..+..+..- .|...||..|+.-- + ..+-.||.|+.
T Consensus 15 ~~~~C-~C~~~~~~~~MI~Cd-~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~ 69 (76)
T 1wem_A 15 NALYC-ICRQPHNNRFMICCD-RCEEWFHGDCVGISEARGRLLERNGEDYICPNCTI 69 (76)
T ss_dssp TCCCS-TTCCCCCSSCEEECS-SSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHH
T ss_pred CCCEE-ECCCccCCCCEEEeC-CCCCcEeCeEEccchhhhhhccCCCCeEECcCCcC
Confidence 34556 999887644555554 59999999998421 1 24668999974
No 92
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=88.33 E-value=0.19 Score=36.06 Aligned_cols=45 Identities=20% Similarity=0.288 Sum_probs=31.6
Q ss_pred CCcccccccccccCceeeecCCCCCcccHhhHHHHHhc---CCCCcccCC
Q 028116 165 SSCCSICLQDIIVGELARSLPHCHHTFHLACVDKWLIR---HGSCPVCRR 211 (213)
Q Consensus 165 ~~~C~ICle~~~~ge~v~~Lp~C~H~FH~~CI~~WL~~---~~sCPlCR~ 211 (213)
...| ||-.....+..+..- .|.-.||..|+..=+.. .-.||.|+.
T Consensus 28 ~vrC-iC~~~~~~~~mi~Cd-~C~~w~H~~C~~~~~~~~p~~w~C~~C~~ 75 (98)
T 2lv9_A 28 VTRC-ICGFTHDDGYMICCD-KCSVWQHIDCMGIDRQHIPDTYLCERCQP 75 (98)
T ss_dssp BCCC-TTSCCSCSSCEEEBT-TTCBEEETTTTTCCTTSCCSSBCCTTTSS
T ss_pred CEEe-ECCCccCCCcEEEcC-CCCCcCcCcCCCCCccCCCCCEECCCCcC
Confidence 3557 898877666655555 59999999998653222 236999974
No 93
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=87.80 E-value=0.6 Score=35.86 Aligned_cols=46 Identities=26% Similarity=0.551 Sum_probs=33.8
Q ss_pred CCCCCcccccccccccCceeeecCCCCCcccHhhHHHHHhc-----------CCCCcccCC
Q 028116 162 PTQSSCCSICLQDIIVGELARSLPHCHHTFHLACVDKWLIR-----------HGSCPVCRR 211 (213)
Q Consensus 162 ~~~~~~C~ICle~~~~ge~v~~Lp~C~H~FH~~CI~~WL~~-----------~~sCPlCR~ 211 (213)
+..+..|.+|-+. |+.+-.- .|...||..||++=+.. .=.||+|+.
T Consensus 60 Dg~~d~C~vC~~G---G~LlcCD-~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~ 116 (142)
T 2lbm_A 60 DGMDEQCRWCAEG---GNLICCD-FCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHP 116 (142)
T ss_dssp TSCBCSCSSSCCC---SSEEECS-SSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCC
T ss_pred CCCCCeecccCCC---CcEEeCC-CCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccC
Confidence 3667889999864 5545444 59999999999977631 226999985
No 94
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=87.80 E-value=0.34 Score=32.72 Aligned_cols=44 Identities=34% Similarity=0.801 Sum_probs=28.6
Q ss_pred CCCcccccccccccCceeeecCC--CC-CcccHhhHHHHHhc----CCCCcccCCC
Q 028116 164 QSSCCSICLQDIIVGELARSLPH--CH-HTFHLACVDKWLIR----HGSCPVCRRD 212 (213)
Q Consensus 164 ~~~~C~ICle~~~~ge~v~~Lp~--C~-H~FH~~CI~~WL~~----~~sCPlCR~~ 212 (213)
+...| ||.+.. .++.+ .--. |. ..||..|+. |.. +-.||.|+..
T Consensus 15 ~~~~C-~C~~~~-~g~MI-~CD~~~C~~~wfH~~Cvg--l~~~p~g~w~Cp~C~~~ 65 (71)
T 1wen_A 15 EPTYC-LCHQVS-YGEMI-GCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQE 65 (71)
T ss_dssp SCCCS-TTCCCS-CSSEE-CCSCSSCSCCCEETTTTT--CSSCCSSCCCCTTTSSC
T ss_pred CCCEE-ECCCCC-CCCEe-EeeCCCCCCccEecccCC--cCcCCCCCEECCCCCcc
Confidence 34556 898864 35533 3334 66 699999997 443 2369999864
No 95
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=86.62 E-value=0.2 Score=36.47 Aligned_cols=47 Identities=19% Similarity=0.458 Sum_probs=31.2
Q ss_pred CCCCcccccccccccCceeeecCCCCCcccHhhHHHHHhc----CCCCcccC
Q 028116 163 TQSSCCSICLQDIIVGELARSLPHCHHTFHLACVDKWLIR----HGSCPVCR 210 (213)
Q Consensus 163 ~~~~~C~ICle~~~~ge~v~~Lp~C~H~FH~~CI~~WL~~----~~sCPlCR 210 (213)
.++..|.||.+.=+..+.+.- ..|...||..|++..+.. .-.||.|+
T Consensus 5 ~~~~~C~~C~~~g~~~~ll~C-~~C~~~~H~~Cl~~~~~~~~~~~W~C~~C~ 55 (111)
T 2ysm_A 5 SSGANCAVCDSPGDLLDQFFC-TTCGQHYHGMCLDIAVTPLKRAGWQCPECK 55 (111)
T ss_dssp CCCSCBTTTCCCCCTTTSEEC-SSSCCEECTTTTTCCCCTTTSTTCCCTTTC
T ss_pred CCCCCCcCCCCCCCCcCCeEC-CCCCCCcChHHhCCccccccccCccCCcCC
Confidence 567889999876332233444 459999999999877642 12466553
No 96
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=86.49 E-value=0.37 Score=35.02 Aligned_cols=47 Identities=21% Similarity=0.418 Sum_probs=32.3
Q ss_pred CCcccccccccccCceeeec-CCCCCcccHhhHHHH------Hh----cCCCCcccCC
Q 028116 165 SSCCSICLQDIIVGELARSL-PHCHHTFHLACVDKW------LI----RHGSCPVCRR 211 (213)
Q Consensus 165 ~~~C~ICle~~~~ge~v~~L-p~C~H~FH~~CI~~W------L~----~~~sCPlCR~ 211 (213)
...|.||.+.+.+......- ..|...||..|+.-= +. .+-.||.|+.
T Consensus 3 ~~~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~ 60 (105)
T 2xb1_A 3 VYPCGACRSEVNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLK 60 (105)
T ss_dssp CCBCTTTCSBCCTTSCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHH
T ss_pred cCCCCCCCCccCCCCCEEEecCCcccccccccCCcCHHHHHhhccCCCCCEECccccC
Confidence 46799999998665444443 259999999997411 10 3447999975
No 97
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=86.38 E-value=0.2 Score=36.72 Aligned_cols=48 Identities=27% Similarity=0.516 Sum_probs=32.0
Q ss_pred CCcccccccccccCceeeecCCCCCcccHhhHHHHHhcC----CCCcccCCC
Q 028116 165 SSCCSICLQDIIVGELARSLPHCHHTFHLACVDKWLIRH----GSCPVCRRD 212 (213)
Q Consensus 165 ~~~C~ICle~~~~ge~v~~Lp~C~H~FH~~CI~~WL~~~----~sCPlCR~~ 212 (213)
-..|.||.+.-.+.+.+..-..|...||..|+++=|... =.||.||..
T Consensus 61 C~~C~vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~p~l~~~P~~~W~C~~C~~k 112 (112)
T 3v43_A 61 CKTCSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLTRMPKGMWICQICRPR 112 (112)
T ss_dssp TCCBTTTCCCCCTTCCCEECTTTCCEECGGGCSSCCSSCCSSCCCCTTTSCC
T ss_pred CCccccccCcCCCccceEEcCCCCCeeecccCCCCCCCCCCCCeECCCCCCc
Confidence 346889986422323344444599999999998666542 269999863
No 98
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=86.26 E-value=0.19 Score=34.48 Aligned_cols=47 Identities=23% Similarity=0.452 Sum_probs=31.5
Q ss_pred CCCcccccccccccCceeeec-CCCCCcccHhhHHHHH---------hcCCCCcccCC
Q 028116 164 QSSCCSICLQDIIVGELARSL-PHCHHTFHLACVDKWL---------IRHGSCPVCRR 211 (213)
Q Consensus 164 ~~~~C~ICle~~~~ge~v~~L-p~C~H~FH~~CI~~WL---------~~~~sCPlCR~ 211 (213)
....| ||-+....+..+..- +.|...||..|+.--- ..+..||.|+.
T Consensus 15 ~~~~C-iC~~~~~~g~MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~ 71 (78)
T 1wew_A 15 IKVRC-VCGNSLETDSMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRL 71 (78)
T ss_dssp CCCCC-SSCCCCCCSCEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHH
T ss_pred CCEEe-ECCCcCCCCCEEEECCccCCccccCEEEccccccccccccCCCCEECCCCCc
Confidence 34557 898875556555544 1599999999985211 13557999975
No 99
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=86.08 E-value=0.11 Score=35.15 Aligned_cols=48 Identities=19% Similarity=0.162 Sum_probs=32.5
Q ss_pred CCCCcccccccccccCceeeecCCCCCcccHhhHHHHH----hcCCCCcccCC
Q 028116 163 TQSSCCSICLQDIIVGELARSLPHCHHTFHLACVDKWL----IRHGSCPVCRR 211 (213)
Q Consensus 163 ~~~~~C~ICle~~~~ge~v~~Lp~C~H~FH~~CI~~WL----~~~~sCPlCR~ 211 (213)
.....| ||......++....--.|...||..|+.--- ..+-.||.|+.
T Consensus 14 ~~~~~C-~C~~~~~~g~~mI~Cd~C~~W~H~~Cvg~~~~~~~~~~~~C~~C~~ 65 (72)
T 1wee_A 14 NWKVDC-KCGTKDDDGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIE 65 (72)
T ss_dssp SSEECC-TTCCCSCCSSCEEECSSSCEEEETTTTTCCTTSCCCSCCCCHHHHH
T ss_pred CcceEe-eCCCccCCCCcEEECCCCCCccCCeeeccCccccCCCcEECCCccC
Confidence 344558 7998876665444444699999999986321 23457999974
No 100
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=85.46 E-value=0.091 Score=37.40 Aligned_cols=48 Identities=23% Similarity=0.444 Sum_probs=32.8
Q ss_pred CCCCcccccccccccCceeeecCCCCCcccHhhHHHHHhcCC----CCcccCC
Q 028116 163 TQSSCCSICLQDIIVGELARSLPHCHHTFHLACVDKWLIRHG----SCPVCRR 211 (213)
Q Consensus 163 ~~~~~C~ICle~~~~ge~v~~Lp~C~H~FH~~CI~~WL~~~~----sCPlCR~ 211 (213)
.++..|.||.+.-..++.+ .--.|...||..|+.+=|...+ .||.|+.
T Consensus 14 ~~~~~C~vC~~~~~~~~ll-~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~ 65 (92)
T 2e6r_A 14 IDSYICQVCSRGDEDDKLL-FCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCIL 65 (92)
T ss_dssp CCCCCCSSSCCSGGGGGCE-ECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHH
T ss_pred cCCCCCccCCCcCCCCCEE-EcCCCCchhccccCCCCcccCCCCCcCCccCcC
Confidence 4567899998875443344 4445999999999985443322 4999864
No 101
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=85.22 E-value=0.19 Score=33.70 Aligned_cols=48 Identities=21% Similarity=0.459 Sum_probs=31.8
Q ss_pred CCCCcccccccccccCceeeecCCCCCcccHhhHHHHH---hcCCCCcccCCC
Q 028116 163 TQSSCCSICLQDIIVGELARSLPHCHHTFHLACVDKWL---IRHGSCPVCRRD 212 (213)
Q Consensus 163 ~~~~~C~ICle~~~~ge~v~~Lp~C~H~FH~~CI~~WL---~~~~sCPlCR~~ 212 (213)
.+...| ||...+..+..+..- .|...||..|+.--- ...-.||.|+..
T Consensus 17 ~~~~~C-iC~~~~~~~~MIqCd-~C~~WfH~~Cvgi~~~~~~~~~~C~~C~~s 67 (68)
T 3o70_A 17 QGLVTC-FCMKPFAGRPMIECN-ECHTWIHLSCAKIRKSNVPEVFVCQKCRDS 67 (68)
T ss_dssp TTCCCS-TTCCCCTTCCEEECT-TTCCEEETTTTTCCTTSCCSSCCCHHHHTC
T ss_pred CCceEe-ECCCcCCCCCEEECC-CCCccccccccCcCcccCCCcEECCCCCCC
Confidence 445667 998876533344444 599999999986321 134479999763
No 102
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=85.05 E-value=0.61 Score=34.08 Aligned_cols=44 Identities=27% Similarity=0.612 Sum_probs=29.7
Q ss_pred CCCCCcccccccccccCceeeec-CCCCCcccHhhHHHHHhcCC----CCcccC
Q 028116 162 PTQSSCCSICLQDIIVGELARSL-PHCHHTFHLACVDKWLIRHG----SCPVCR 210 (213)
Q Consensus 162 ~~~~~~C~ICle~~~~ge~v~~L-p~C~H~FH~~CI~~WL~~~~----sCPlCR 210 (213)
..++..|.+|.+ .|+.+.-- +.|...||..|+. |...+ .||-|+
T Consensus 12 ~~~~~~C~~C~~---~G~ll~CD~~~Cp~~fH~~Cl~--L~~~P~g~W~Cp~c~ 60 (107)
T 4gne_A 12 QMHEDYCFQCGD---GGELVMCDKKDCPKAYHLLCLN--LTQPPYGKWECPWHQ 60 (107)
T ss_dssp CSSCSSCTTTCC---CSEEEECCSTTCCCEECTGGGT--CSSCCSSCCCCGGGB
T ss_pred CCCCCCCCcCCC---CCcEeEECCCCCCcccccccCc--CCcCCCCCEECCCCC
Confidence 366788999984 35544433 1488999999998 55422 488664
No 103
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=84.71 E-value=0.66 Score=45.89 Aligned_cols=47 Identities=11% Similarity=0.110 Sum_probs=40.0
Q ss_pred CCCCcccccccccccCceeeecCCCC-CcccHhhHHHHHhcCCCCcccCCCC
Q 028116 163 TQSSCCSICLQDIIVGELARSLPHCH-HTFHLACVDKWLIRHGSCPVCRRDV 213 (213)
Q Consensus 163 ~~~~~C~ICle~~~~ge~v~~Lp~C~-H~FH~~CI~~WL~~~~sCPlCR~~v 213 (213)
++.-.|||-++-+.+ +..+| -| ++|-..+|.+||.++++||+=|.++
T Consensus 889 P~~F~cPIs~~lM~D---PVilp-sG~~TydR~~I~~wl~~~~tdP~Tr~~L 936 (968)
T 3m62_A 889 PDEFLDPLMYTIMKD---PVILP-ASKMNIDRSTIKAHLLSDSTDPFNRMPL 936 (968)
T ss_dssp CGGGBCTTTCSBCSS---EEECT-TTCCEEEHHHHHHHHTTCCBCTTTCCBC
T ss_pred cHHhCCcchhhHHhC---CeEcC-CCCEEECHHHHHHHHhcCCCCCCCCCCC
Confidence 456779999998876 77888 76 6999999999999999999987764
No 104
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=84.28 E-value=0.36 Score=32.59 Aligned_cols=49 Identities=20% Similarity=0.413 Sum_probs=32.7
Q ss_pred CCCCccccccccc-ccCceeeecCCCCCcccHhhHHHHHhc--CCCCcccCC
Q 028116 163 TQSSCCSICLQDI-IVGELARSLPHCHHTFHLACVDKWLIR--HGSCPVCRR 211 (213)
Q Consensus 163 ~~~~~C~ICle~~-~~ge~v~~Lp~C~H~FH~~CI~~WL~~--~~sCPlCR~ 211 (213)
.++..|.||.+.- ..++.+..--.|.-.||..|+..=..- .=.||.|+.
T Consensus 14 ~~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~~vP~g~W~C~~C~~ 65 (71)
T 2ku3_A 14 DEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQ 65 (71)
T ss_dssp CSSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCSSCCSSCCCCHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCCcCCCCCcCCccCcC
Confidence 5678899998763 233344455569999999998743221 125888864
No 105
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=84.03 E-value=1.4 Score=32.09 Aligned_cols=33 Identities=27% Similarity=0.524 Sum_probs=23.2
Q ss_pred CCCccccccccc------ccCceeeecCCCCCcccHhhHH
Q 028116 164 QSSCCSICLQDI------IVGELARSLPHCHHTFHLACVD 197 (213)
Q Consensus 164 ~~~~C~ICle~~------~~ge~v~~Lp~C~H~FH~~CI~ 197 (213)
....|.+|+..= ..++.+.-. .|+..||..|++
T Consensus 4 p~~~C~~C~~~~~~~~~g~~~~Ll~C~-~C~~~~H~~Cl~ 42 (112)
T 3v43_A 4 PIPICSFCLGTKEQNREKKPEELISCA-DCGNSGHPSCLK 42 (112)
T ss_dssp CCSSBTTTCCCTTCCTTSCCCCCEECT-TTCCEECHHHHT
T ss_pred cCccccccCCchhhCcCCCchhceEhh-hcCCCCCCchhc
Confidence 457799998752 222444444 599999999995
No 106
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=82.50 E-value=0.24 Score=34.06 Aligned_cols=45 Identities=29% Similarity=0.577 Sum_probs=29.3
Q ss_pred cccccccccccCceeeecCCCCCcccHhhHHHHHhcC-----CCCcccCCC
Q 028116 167 CCSICLQDIIVGELARSLPHCHHTFHLACVDKWLIRH-----GSCPVCRRD 212 (213)
Q Consensus 167 ~C~ICle~~~~ge~v~~Lp~C~H~FH~~CI~~WL~~~-----~sCPlCR~~ 212 (213)
.|.||.+.-..++.+ .--.|...||..|+++-|... =.||.|+.+
T Consensus 28 ~C~vC~~~~d~~~ll-~CD~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~d 77 (77)
T 3shb_A 28 ACHLCGGRQDPDKQL-MCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRND 77 (77)
T ss_dssp SBTTTCCCSCGGGEE-ECTTTCCEEETTTSSSCCSSCCSSSCCCCTTTC--
T ss_pred cCCccCCCCCCccee-EeCCCCCccCcccCCCcccCCCCCCceECcCcccc
Confidence 577776654443444 334599999999998766532 259999864
No 107
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=82.05 E-value=0.35 Score=34.00 Aligned_cols=49 Identities=20% Similarity=0.413 Sum_probs=32.5
Q ss_pred CCCCccccccccc-ccCceeeecCCCCCcccHhhHHHHHhc--CCCCcccCC
Q 028116 163 TQSSCCSICLQDI-IVGELARSLPHCHHTFHLACVDKWLIR--HGSCPVCRR 211 (213)
Q Consensus 163 ~~~~~C~ICle~~-~~ge~v~~Lp~C~H~FH~~CI~~WL~~--~~sCPlCR~ 211 (213)
+++..|.||.+.- ...+.+..-..|.-.||..|+..=+.- .=.||.|+.
T Consensus 23 ~~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~ 74 (88)
T 2l43_A 23 DEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQ 74 (88)
T ss_dssp CCCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHH
T ss_pred CCCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCccCCCceECccccC
Confidence 4568899998763 223344455569999999999753321 225888864
No 108
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=81.97 E-value=1.7 Score=32.77 Aligned_cols=45 Identities=24% Similarity=0.582 Sum_probs=32.3
Q ss_pred CCCCcccccccccccCceeeecCCCCCcccHhhHHHHH-----hc------CCCCcccCC
Q 028116 163 TQSSCCSICLQDIIVGELARSLPHCHHTFHLACVDKWL-----IR------HGSCPVCRR 211 (213)
Q Consensus 163 ~~~~~C~ICle~~~~ge~v~~Lp~C~H~FH~~CI~~WL-----~~------~~sCPlCR~ 211 (213)
..+..|.||-+. |+.+ .-..|-..||..||++-+ .+ .=.|++|+.
T Consensus 55 g~~~~C~vC~dG---G~Ll-cCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~ 110 (129)
T 3ql9_A 55 GMDEQCRWCAEG---GNLI-CCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHP 110 (129)
T ss_dssp SCBSSCTTTCCC---SEEE-ECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCC
T ss_pred CCCCcCeecCCC---CeeE-ecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCC
Confidence 567789999864 4544 334699999999999753 11 126999975
No 109
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=79.63 E-value=0.49 Score=32.46 Aligned_cols=46 Identities=22% Similarity=0.513 Sum_probs=31.2
Q ss_pred CcccccccccccCceeeecCCCCCcccHhhHHHHHhc-----CCCCcccCCC
Q 028116 166 SCCSICLQDIIVGELARSLPHCHHTFHLACVDKWLIR-----HGSCPVCRRD 212 (213)
Q Consensus 166 ~~C~ICle~~~~ge~v~~Lp~C~H~FH~~CI~~WL~~-----~~sCPlCR~~ 212 (213)
..|.||.+.-..++.+ .--.|...||..|+++=|.. .=.||.|+.+
T Consensus 27 c~C~vC~~~~~~~~ll-~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~d 77 (77)
T 2e6s_A 27 CSCRVCGGKHEPNMQL-LCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKTD 77 (77)
T ss_dssp SSCSSSCCCCCSTTEE-ECSSSCCEEETTSSSSCCSSCCCSSCCCCTTTCCC
T ss_pred CCCcCcCCcCCCCCEE-EcCCCCccccccccCCCccCCCCCCCcCCcCccCc
Confidence 4788998653344444 44469999999999854443 1259999763
No 110
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=79.19 E-value=0.47 Score=31.85 Aligned_cols=45 Identities=29% Similarity=0.595 Sum_probs=29.9
Q ss_pred cccccccccccCceeeecCCCCCcccHhhHHHHHhc-----CCCCcccCCC
Q 028116 167 CCSICLQDIIVGELARSLPHCHHTFHLACVDKWLIR-----HGSCPVCRRD 212 (213)
Q Consensus 167 ~C~ICle~~~~ge~v~~Lp~C~H~FH~~CI~~WL~~-----~~sCPlCR~~ 212 (213)
.|.||.+.-..++.+ .--.|...||..|+++=|.+ .=.||.|+.+
T Consensus 20 ~C~~C~~~~~~~~ll-~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~~ 69 (70)
T 3asl_A 20 ACHLCGGRQDPDKQL-MCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRND 69 (70)
T ss_dssp SBTTTCCCSCGGGEE-ECTTTCCEEEGGGSSSCCSSCCSSSCCCCTTTSCC
T ss_pred CCcCCCCcCCCCCEE-EcCCCCCceecccCCCCcCCCCCCCCcCCcCccCc
Confidence 566887643344444 44459999999999854443 2269999864
No 111
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=79.14 E-value=0.54 Score=34.46 Aligned_cols=33 Identities=27% Similarity=0.482 Sum_probs=23.0
Q ss_pred Ccccccccccc-------cCceeeecCCCCCcccHhhHHHH
Q 028116 166 SCCSICLQDII-------VGELARSLPHCHHTFHLACVDKW 199 (213)
Q Consensus 166 ~~C~ICle~~~-------~ge~v~~Lp~C~H~FH~~CI~~W 199 (213)
..|.||+..-. .++.+.-. .|+..||..|++..
T Consensus 2 ~~C~~C~~~~~~n~k~g~~~~Li~C~-~C~~~~H~~Cl~~~ 41 (114)
T 2kwj_A 2 SYCDFCLGGSNMNKKSGRPEELVSCA-DCGRSGHPTCLQFT 41 (114)
T ss_dssp CCCSSSCCBTTBCTTTCCCCCCEECS-SSCCEECTTTTTCC
T ss_pred CcCccCCCCccccccCCCCCCCeEeC-CCCCccchhhCCCh
Confidence 56999987641 12344444 59999999998754
No 112
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=79.06 E-value=1.1 Score=29.22 Aligned_cols=49 Identities=18% Similarity=0.371 Sum_probs=33.6
Q ss_pred CCCCccccccccccc-CceeeecCCCCCcccHhhHHHHHhc-------CCCCcccCC
Q 028116 163 TQSSCCSICLQDIIV-GELARSLPHCHHTFHLACVDKWLIR-------HGSCPVCRR 211 (213)
Q Consensus 163 ~~~~~C~ICle~~~~-ge~v~~Lp~C~H~FH~~CI~~WL~~-------~~sCPlCR~ 211 (213)
.++..|.||.+.... ++.+..-..|...||..|+..=+.. .=.||.|+.
T Consensus 4 ~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~ 60 (66)
T 2yt5_A 4 GSSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVF 60 (66)
T ss_dssp CCCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcC
Confidence 567889999987433 2344445569999999998864421 225998865
No 113
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=78.36 E-value=0.46 Score=30.82 Aligned_cols=43 Identities=37% Similarity=0.821 Sum_probs=28.1
Q ss_pred CCcccccccccccCceeeecCC--CC-CcccHhhHHHHHhc----CCCCcccCCC
Q 028116 165 SSCCSICLQDIIVGELARSLPH--CH-HTFHLACVDKWLIR----HGSCPVCRRD 212 (213)
Q Consensus 165 ~~~C~ICle~~~~ge~v~~Lp~--C~-H~FH~~CI~~WL~~----~~sCPlCR~~ 212 (213)
..-| ||.+.. .|+.+ .--+ |. ..||..|+. |.. +-.||.|+++
T Consensus 9 ~~yC-~C~~~~-~g~mi-~CD~~~C~~~wfH~~Cvg--l~~~p~~~w~Cp~C~~~ 58 (59)
T 3c6w_A 9 PTYC-LCHQVS-YGEMI-GCDNPDCPIEWFHFACVD--LTTKPKGKWFCPRCVQE 58 (59)
T ss_dssp CEET-TTTEEC-CSEEE-ECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHCC
T ss_pred CcEE-ECCCCC-CCCee-EeeCCCCCCCCEecccCC--cccCCCCCEECcCccCc
Confidence 3446 998864 35533 3334 66 699999998 443 2369999763
No 114
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=77.84 E-value=0.46 Score=30.87 Aligned_cols=43 Identities=35% Similarity=0.806 Sum_probs=27.1
Q ss_pred CCcccccccccccCceeeecCC--CC-CcccHhhHHHHHhc----CCCCcccCCC
Q 028116 165 SSCCSICLQDIIVGELARSLPH--CH-HTFHLACVDKWLIR----HGSCPVCRRD 212 (213)
Q Consensus 165 ~~~C~ICle~~~~ge~v~~Lp~--C~-H~FH~~CI~~WL~~----~~sCPlCR~~ 212 (213)
...| ||.+.. .|+.+ .--+ |. ..||..|+. |.. +-.||.|++.
T Consensus 10 ~~~C-~C~~~~-~g~mi-~CD~cdC~~~wfH~~Cvg--l~~~p~g~w~C~~C~~~ 59 (60)
T 2vnf_A 10 PTYC-LCHQVS-YGEMI-GCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQE 59 (60)
T ss_dssp CEET-TTTEEC-CSEEE-ECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC-
T ss_pred CCEE-ECCCcC-CCCEE-EeCCCCCCCceEehhcCC--CCcCCCCCEECcCccCc
Confidence 3445 998864 35433 3334 55 689999998 543 2369999753
No 115
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=77.56 E-value=1.6 Score=30.08 Aligned_cols=37 Identities=11% Similarity=0.177 Sum_probs=28.0
Q ss_pred CCCCcccccccccccCceeeecCCCCCcccHhhHHHH
Q 028116 163 TQSSCCSICLQDIIVGELARSLPHCHHTFHLACVDKW 199 (213)
Q Consensus 163 ~~~~~C~ICle~~~~ge~v~~Lp~C~H~FH~~CI~~W 199 (213)
.+...|.+|...|..-..--.-..||++|+..|....
T Consensus 19 ~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~ 55 (84)
T 1z2q_A 19 EDAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRHR 55 (84)
T ss_dssp TTCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCCE
T ss_pred CCCCCCcCcCCccccchhcccccCCCcEEChHHhCCe
Confidence 4567899999999875444445569999999996553
No 116
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=77.36 E-value=0.51 Score=30.95 Aligned_cols=43 Identities=37% Similarity=0.814 Sum_probs=27.6
Q ss_pred CCcccccccccccCceeeecCC--CC-CcccHhhHHHHHhc----CCCCcccCCC
Q 028116 165 SSCCSICLQDIIVGELARSLPH--CH-HTFHLACVDKWLIR----HGSCPVCRRD 212 (213)
Q Consensus 165 ~~~C~ICle~~~~ge~v~~Lp~--C~-H~FH~~CI~~WL~~----~~sCPlCR~~ 212 (213)
..-| ||.+.. .|+.+ .--+ |. ..||..|+. |.. +-.||.|++.
T Consensus 11 ~~yC-~C~~~~-~g~MI-~CD~c~C~~~WfH~~Cvg--l~~~p~~~w~Cp~C~~~ 60 (62)
T 2g6q_A 11 PTYC-LCNQVS-YGEMI-GCDNEQCPIEWFHFSCVS--LTYKPKGKWYCPKCRGD 60 (62)
T ss_dssp CEET-TTTEEC-CSEEE-ECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHTC
T ss_pred CcEE-ECCCCC-CCCee-eeeCCCCCcccEecccCC--cCcCCCCCEECcCcccC
Confidence 3445 998863 35544 3334 54 899999997 332 3369999763
No 117
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=76.37 E-value=1.8 Score=29.70 Aligned_cols=36 Identities=17% Similarity=0.516 Sum_probs=27.3
Q ss_pred CCCCcccccccccccCceeeecCCCCCcccHhhHHH
Q 028116 163 TQSSCCSICLQDIIVGELARSLPHCHHTFHLACVDK 198 (213)
Q Consensus 163 ~~~~~C~ICle~~~~ge~v~~Lp~C~H~FH~~CI~~ 198 (213)
.+...|.+|...|.....--.-..||++|+..|...
T Consensus 17 ~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~ 52 (82)
T 2yw8_A 17 DEATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSN 52 (82)
T ss_dssp CCCCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCE
T ss_pred ccCCcccCcCCcccCccccccCCCCCCEEChHHhCC
Confidence 445789999999986544444556999999999654
No 118
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=75.93 E-value=2 Score=28.79 Aligned_cols=34 Identities=18% Similarity=0.327 Sum_probs=25.7
Q ss_pred CCcccccccccccCceeeecCCCCCcccHhhHHH
Q 028116 165 SSCCSICLQDIIVGELARSLPHCHHTFHLACVDK 198 (213)
Q Consensus 165 ~~~C~ICle~~~~ge~v~~Lp~C~H~FH~~CI~~ 198 (213)
+..|.+|...|..-..--.-..||++|+..|-..
T Consensus 11 ~~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~~ 44 (73)
T 1vfy_A 11 SDACMICSKKFSLLNRKHHCRSCGGVFCQEHSSN 44 (73)
T ss_dssp CSBCTTTCCBCBTTBCCEECTTTCCEECGGGSCE
T ss_pred CCcccCCCCccCCccccccCCCCCEEEcccccCC
Confidence 3589999999986544444556999999999643
No 119
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=75.79 E-value=0.73 Score=38.09 Aligned_cols=46 Identities=28% Similarity=0.566 Sum_probs=27.1
Q ss_pred CcccccccccccCceeeecCCCCCcccHhhHHHHHhcC-----CCCcccCCC
Q 028116 166 SCCSICLQDIIVGELARSLPHCHHTFHLACVDKWLIRH-----GSCPVCRRD 212 (213)
Q Consensus 166 ~~C~ICle~~~~ge~v~~Lp~C~H~FH~~CI~~WL~~~-----~sCPlCR~~ 212 (213)
..|.+|.+.=..++.+ ..-.|...||..|+++=|... =.||.|+.+
T Consensus 175 c~C~vC~~~~~~~~lL-~CD~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~~ 225 (226)
T 3ask_A 175 CACHLCGGRQDPDKQL-MCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRND 225 (226)
T ss_dssp TSCSSSCCCCC--CCE-ECSSSCCEECSCC--CCCCSCCSSSCCCCGGGC--
T ss_pred CCCcCCCCCCCCCCeE-EcCCCCcceeCccCCCCcccCCCCCCCCCcCCcCc
Confidence 3588887643333444 444699999999998655431 259999864
No 120
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=74.84 E-value=2 Score=29.52 Aligned_cols=36 Identities=22% Similarity=0.398 Sum_probs=26.5
Q ss_pred CCCCcccccccccccCceeeecCCCCCcccHhhHHH
Q 028116 163 TQSSCCSICLQDIIVGELARSLPHCHHTFHLACVDK 198 (213)
Q Consensus 163 ~~~~~C~ICle~~~~ge~v~~Lp~C~H~FH~~CI~~ 198 (213)
.+...|.+|...|..-..--.-..||++|+..|...
T Consensus 12 ~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~ 47 (84)
T 1x4u_A 12 NNFGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCSF 47 (84)
T ss_dssp CCCSSCSSSCCCCCSSSCCEECSSSCCEECTTTSCE
T ss_pred CCCCcCcCcCCccccchhhhhhcCCCcEEChhhcCC
Confidence 445789999999976433334456999999999654
No 121
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=74.79 E-value=0.37 Score=32.04 Aligned_cols=45 Identities=24% Similarity=0.406 Sum_probs=29.4
Q ss_pred CcccccccccccCceeeec-CCCCCcccHhhHHHH---Hh-----cCCCCcccCC
Q 028116 166 SCCSICLQDIIVGELARSL-PHCHHTFHLACVDKW---LI-----RHGSCPVCRR 211 (213)
Q Consensus 166 ~~C~ICle~~~~ge~v~~L-p~C~H~FH~~CI~~W---L~-----~~~sCPlCR~ 211 (213)
..| ||-.....+..+..- ++|...||..|+.-- .. .+-.||.||.
T Consensus 11 v~C-~C~~~~~~g~mI~CD~~~C~~W~H~~Cvgi~~~~~~~~~~p~~~~C~~Cr~ 64 (68)
T 2rsd_A 11 VRC-ICSSTMVNDSMIQCEDQRCQVWQHLNCVLIPDKPGESAEVPPVFYCELCRL 64 (68)
T ss_dssp ECC-TTCCCSCCSCEEECSCTTTCEEEETTTSCCCSSTTSCCCCCSSCCCHHHHH
T ss_pred EEe-ECCCCcCCCCEEEECCCCCCCeEchhhCCCCcccccccCCCCcEECcCccC
Confidence 445 897766666655543 259999999997310 01 1346999984
No 122
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=74.68 E-value=1.7 Score=30.42 Aligned_cols=36 Identities=14% Similarity=0.350 Sum_probs=27.2
Q ss_pred CCCcccccccccccCceeeecCCCCCcccHhhHHHH
Q 028116 164 QSSCCSICLQDIIVGELARSLPHCHHTFHLACVDKW 199 (213)
Q Consensus 164 ~~~~C~ICle~~~~ge~v~~Lp~C~H~FH~~CI~~W 199 (213)
+...|.+|...|..-..--.-..||++|+..|...+
T Consensus 19 ~~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~ 54 (90)
T 3t7l_A 19 EAPNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRK 54 (90)
T ss_dssp GCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEE
T ss_pred cCCcCcCCCCcccchhhCccccCCCCEECCcccCCe
Confidence 456799999999765444445569999999997654
No 123
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=73.61 E-value=1.8 Score=32.25 Aligned_cols=36 Identities=19% Similarity=0.354 Sum_probs=27.0
Q ss_pred CCCcccccccccccCceeeecCCCCCcccHhhHHHH
Q 028116 164 QSSCCSICLQDIIVGELARSLPHCHHTFHLACVDKW 199 (213)
Q Consensus 164 ~~~~C~ICle~~~~ge~v~~Lp~C~H~FH~~CI~~W 199 (213)
+...|.+|...|..-..--.-..||++||..|....
T Consensus 68 ~~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~~ 103 (125)
T 1joc_A 68 EVQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAKN 103 (125)
T ss_dssp GCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEE
T ss_pred CCCCCcCcCCccccccccccCCCCCeEEChHHhCCc
Confidence 457899999999865444445569999999996543
No 124
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=73.40 E-value=0.8 Score=30.94 Aligned_cols=47 Identities=21% Similarity=0.359 Sum_probs=30.7
Q ss_pred CCcccccccccccCceeeecCCCCCcccHhhHHHHHh-----cCCCCcccCC
Q 028116 165 SSCCSICLQDIIVGELARSLPHCHHTFHLACVDKWLI-----RHGSCPVCRR 211 (213)
Q Consensus 165 ~~~C~ICle~~~~ge~v~~Lp~C~H~FH~~CI~~WL~-----~~~sCPlCR~ 211 (213)
...-.||...+..++....--.|.-.||..|+.---. ..-.||.|+.
T Consensus 9 ~~~yCiC~~~~~~~~~MI~Cd~C~~WfH~~Cvg~~~~~~~~~~~~~C~~C~~ 60 (75)
T 3kqi_A 9 VPVYCVCRLPYDVTRFMIECDACKDWFHGSCVGVEEEEAPDIDIYHCPNCEK 60 (75)
T ss_dssp CCEETTTTEECCTTSCEEECTTTCCEEEHHHHTCCTTTGGGBSSCCCHHHHH
T ss_pred CeeEEECCCcCCCCCCEEEcCCCCCCEecccccccccccCCCCEEECCCCcc
Confidence 3445599887764444444445999999999853211 2456999974
No 125
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=73.35 E-value=1.9 Score=28.04 Aligned_cols=43 Identities=21% Similarity=0.375 Sum_probs=30.5
Q ss_pred CcccccccccccCceeeecCCCCCcccHhhHHHHHhcCCCCccc
Q 028116 166 SCCSICLQDIIVGELARSLPHCHHTFHLACVDKWLIRHGSCPVC 209 (213)
Q Consensus 166 ~~C~ICle~~~~ge~v~~Lp~C~H~FH~~CI~~WL~~~~sCPlC 209 (213)
..|--|+..|.+.. .-.-|+|++.|+.+|=.---..=..||-|
T Consensus 16 ~~C~~C~~~~~~~~-~y~C~~C~~~FC~dCD~fiHe~Lh~CPgC 58 (59)
T 1z60_A 16 RFCYGCQGELKDQH-VYVCAVCQNVFCVDCDVFVHDSLHSCPGC 58 (59)
T ss_dssp CEETTTTEECTTSE-EECCTTTTCCBCHHHHHTTTTTSCSSSTT
T ss_pred CcccccCcccCCCc-cEECCccCcCcccchhHHHHhhccCCcCC
Confidence 56999999986432 24577899999999933222334579988
No 126
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=72.27 E-value=0.94 Score=32.06 Aligned_cols=44 Identities=23% Similarity=0.510 Sum_probs=27.5
Q ss_pred CCCCcccccccccccCceeeecCCCC---CcccHhhHHHHHhc----CCCCcc-cCC
Q 028116 163 TQSSCCSICLQDIIVGELARSLPHCH---HTFHLACVDKWLIR----HGSCPV-CRR 211 (213)
Q Consensus 163 ~~~~~C~ICle~~~~ge~v~~Lp~C~---H~FH~~CI~~WL~~----~~sCPl-CR~ 211 (213)
.+...| ||.+.. .|+.+..- .|. ..||..|+. |.. +-.||. |++
T Consensus 24 ~~~~yC-iC~~~~-~g~MI~CD-~c~C~~eWfH~~CVg--l~~~p~~~W~Cp~cC~~ 75 (90)
T 2jmi_A 24 QEEVYC-FCRNVS-YGPMVACD-NPACPFEWFHYGCVG--LKQAPKGKWYCSKDCKE 75 (90)
T ss_dssp CCSCCS-TTTCCC-SSSEECCC-SSSCSCSCEETTTSS--CSSCTTSCCCSSHHHHH
T ss_pred CCCcEE-EeCCCC-CCCEEEec-CCCCccccCcCccCC--CCcCCCCCccCChhhcc
Confidence 344556 998753 35544433 455 789999986 332 336999 863
No 127
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=71.31 E-value=1.9 Score=34.89 Aligned_cols=36 Identities=17% Similarity=0.385 Sum_probs=27.3
Q ss_pred CCCcccccccccccCceeeecCCCCCcccHhhHHHH
Q 028116 164 QSSCCSICLQDIIVGELARSLPHCHHTFHLACVDKW 199 (213)
Q Consensus 164 ~~~~C~ICle~~~~ge~v~~Lp~C~H~FH~~CI~~W 199 (213)
++..|.+|...|..-..--....||++||..|....
T Consensus 160 ~~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~~ 195 (220)
T 1dvp_A 160 DGRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAKQ 195 (220)
T ss_dssp CCSBCTTTCCBCCSSSCCEECTTTCCEECSTTSCEE
T ss_pred CCCccCCCCCccCCcccccccCCcCCEEChHHhCCe
Confidence 357899999999765444455579999999996543
No 128
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=70.70 E-value=0.66 Score=34.62 Aligned_cols=47 Identities=15% Similarity=0.365 Sum_probs=28.2
Q ss_pred CCCCcccccccccccCceeeecCCCCCcccHhhHHHHHhcCCCCccc
Q 028116 163 TQSSCCSICLQDIIVGELARSLPHCHHTFHLACVDKWLIRHGSCPVC 209 (213)
Q Consensus 163 ~~~~~C~ICle~~~~ge~v~~Lp~C~H~FH~~CI~~WL~~~~sCPlC 209 (213)
.....|..|...|..-..--....||.+|+..|..........|-.|
T Consensus 17 ~~~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~~vRVC~~C 63 (120)
T 1y02_A 17 GLEPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNGPRLCLLC 63 (120)
T ss_dssp ---CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC----CCEEHHH
T ss_pred cccCcccCcCCccccccccccCCCCCCeeCHHHhCCCCCCceECHHH
Confidence 34568999999997644334455699999999965543333344443
No 129
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=70.62 E-value=4 Score=36.09 Aligned_cols=46 Identities=26% Similarity=0.526 Sum_probs=29.7
Q ss_pred CCcccccccccccCceeeecCCCCCc--ccHhhHHHHHhcCC--CCcccCCCC
Q 028116 165 SSCCSICLQDIIVGELARSLPHCHHT--FHLACVDKWLIRHG--SCPVCRRDV 213 (213)
Q Consensus 165 ~~~C~ICle~~~~ge~v~~Lp~C~H~--FH~~CI~~WL~~~~--sCPlCR~~v 213 (213)
...||+=+..++. .+|-.. |.|+ |-..=+.....+.. .||+|.+++
T Consensus 249 SL~CPlS~~ri~~--PvRg~~-C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~ 298 (371)
T 3i2d_A 249 SLQCPISYTRMKY--PSKSIN-CKHLQCFDALWFLHSQLQIPTWQCPVCQIDI 298 (371)
T ss_dssp ESBCTTTSSBCSS--EEEETT-CCSSCCEEHHHHHHHHHHSCCCBCTTTCCBC
T ss_pred eecCCCccccccc--cCcCCc-CCCcceECHHHHHHHhhcCCceeCCCCCccc
Confidence 3569988887664 355665 9998 55544444433333 699998753
No 130
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=70.59 E-value=0.62 Score=31.97 Aligned_cols=35 Identities=14% Similarity=0.418 Sum_probs=22.2
Q ss_pred CCcccc--ccccccc--CceeeecC-----CCCCcccHhhHHHH
Q 028116 165 SSCCSI--CLQDIIV--GELARSLP-----HCHHTFHLACVDKW 199 (213)
Q Consensus 165 ~~~C~I--Cle~~~~--ge~v~~Lp-----~C~H~FH~~CI~~W 199 (213)
..-||- |-..+.. +.....-| +|+|.|+..|-..|
T Consensus 25 ~~~CP~p~C~~~v~~~~~~~~v~C~~~~~~~C~~~FC~~C~~~w 68 (80)
T 2jmo_A 25 GVLCPRPGCGAGLLPEPDQRKVTCEGGNGLGCGFAFCRECKEAY 68 (80)
T ss_dssp SCCCCSSSCCCCCCCCSCTTSBCTTSSSTTCCSCCEETTTTEEC
T ss_pred cEECCCCCCCcccEECCCCCcCCCCCCCCCCCCCeeccccCccc
Confidence 445665 5544322 22334454 69999999999888
No 131
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=70.51 E-value=2.2 Score=34.83 Aligned_cols=36 Identities=19% Similarity=0.349 Sum_probs=27.7
Q ss_pred CCCcccccccccccCceeeecCCCCCcccHhhHHHH
Q 028116 164 QSSCCSICLQDIIVGELARSLPHCHHTFHLACVDKW 199 (213)
Q Consensus 164 ~~~~C~ICle~~~~ge~v~~Lp~C~H~FH~~CI~~W 199 (213)
++..|.+|...|..-..--....||++||..|-...
T Consensus 163 ~~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~~ 198 (226)
T 3zyq_A 163 DAEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSKY 198 (226)
T ss_dssp CCSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCEE
T ss_pred cCCCCcCcCCCCCccccccccCCCcCEeChhhcCCc
Confidence 356899999999875544455679999999996543
No 132
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=70.36 E-value=4.1 Score=35.87 Aligned_cols=45 Identities=22% Similarity=0.498 Sum_probs=30.1
Q ss_pred CcccccccccccCceeeecCCCCCc--ccHhhHHHHHhcCC--CCcccCCCC
Q 028116 166 SCCSICLQDIIVGELARSLPHCHHT--FHLACVDKWLIRHG--SCPVCRRDV 213 (213)
Q Consensus 166 ~~C~ICle~~~~ge~v~~Lp~C~H~--FH~~CI~~WL~~~~--sCPlCR~~v 213 (213)
..||+=...++. .+|-.. |.|+ |-..=+.....+.+ .||+|.+++
T Consensus 216 L~CPlS~~ri~~--P~Rg~~-C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~ 264 (360)
T 4fo9_A 216 LMCPLGKMRLTI--PCRAVT-CTHLQCFDAALYLQMNEKKPTWICPVCDKKA 264 (360)
T ss_dssp SBCTTTCSBCSS--EEEETT-CCCCCCEEHHHHHHHHHHSCCCBCTTTCSBC
T ss_pred eeCCCccceecc--CCcCCC-CCCCccCCHHHHHHHHhhCCCeECCCCCccc
Confidence 459988877765 355554 9998 66555555444443 699998763
No 133
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=70.26 E-value=2.9 Score=29.13 Aligned_cols=36 Identities=17% Similarity=0.291 Sum_probs=26.6
Q ss_pred CCCCcccccccccccCceeeecCCCCCcccHhhHHH
Q 028116 163 TQSSCCSICLQDIIVGELARSLPHCHHTFHLACVDK 198 (213)
Q Consensus 163 ~~~~~C~ICle~~~~ge~v~~Lp~C~H~FH~~CI~~ 198 (213)
.+...|.+|...|..-..--.-..||++|+..|...
T Consensus 7 ~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~ 42 (88)
T 1wfk_A 7 GMESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSF 42 (88)
T ss_dssp CCCSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCE
T ss_pred CcCCCCcCcCCcccCccccccCCCCCCEEChhHcCC
Confidence 345689999999986543344556999999999654
No 134
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=69.72 E-value=2.5 Score=31.91 Aligned_cols=35 Identities=14% Similarity=0.351 Sum_probs=26.0
Q ss_pred CCCCcccccccccc-cCceeeecCCCCCcccHhhHH
Q 028116 163 TQSSCCSICLQDII-VGELARSLPHCHHTFHLACVD 197 (213)
Q Consensus 163 ~~~~~C~ICle~~~-~ge~v~~Lp~C~H~FH~~CI~ 197 (213)
.++..|.+|.+.|. .+..-+.-..|.|.+|..|-.
T Consensus 53 ~~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~ 88 (134)
T 1zbd_B 53 DGVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGV 88 (134)
T ss_dssp CSSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEE
T ss_pred CCCccccccCCCcccccCCCCCCCCCCcccccccCC
Confidence 35688999999983 434445555699999999944
No 135
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=68.64 E-value=0.81 Score=33.34 Aligned_cols=22 Identities=23% Similarity=0.670 Sum_probs=14.9
Q ss_pred CCCCcccHhhHHHHHhcCCCCcccCCC
Q 028116 186 HCHHTFHLACVDKWLIRHGSCPVCRRD 212 (213)
Q Consensus 186 ~C~H~FH~~CI~~WL~~~~sCPlCR~~ 212 (213)
+||+.| .+=+.....||.|+.+
T Consensus 72 ~CG~~F-----~~~~~kPsrCP~CkSe 93 (105)
T 2gmg_A 72 KCGFVF-----KAEINIPSRCPKCKSE 93 (105)
T ss_dssp TTCCBC-----CCCSSCCSSCSSSCCC
T ss_pred hCcCee-----cccCCCCCCCcCCCCC
Confidence 489998 1222356789999874
No 136
>2lbg_A Major prion protein; conserved hydrophobic region, membrane protei; NMR {Homo sapiens}
Probab=68.19 E-value=2.5 Score=22.96 Aligned_cols=14 Identities=43% Similarity=0.783 Sum_probs=7.6
Q ss_pred hhHHHHHHHHhhhc
Q 028116 34 AGAFTGAITGALAG 47 (213)
Q Consensus 34 ~g~~~ga~~ga~~g 47 (213)
+|+++|+.-|-+.|
T Consensus 9 AGaVvGglGgy~lg 22 (27)
T 2lbg_A 9 AGAVVGGLGGYMLG 22 (27)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hhhhhhhhHHHHHH
Confidence 55666655554444
No 137
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=67.27 E-value=2.9 Score=23.23 Aligned_cols=29 Identities=21% Similarity=0.401 Sum_probs=22.2
Q ss_pred CCcccccccccccCceeeecCCCCCcccHhhH
Q 028116 165 SSCCSICLQDIIVGELARSLPHCHHTFHLACV 196 (213)
Q Consensus 165 ~~~C~ICle~~~~ge~v~~Lp~C~H~FH~~CI 196 (213)
.+.|+.|-......|.+.. =+..||..|.
T Consensus 3 ~~~C~~C~k~Vy~~Ek~~~---~g~~~Hk~CF 31 (31)
T 1zfo_A 3 NPNCARCGKIVYPTEKVNC---LDKFWHKACF 31 (31)
T ss_dssp CCBCSSSCSBCCGGGCCCS---SSSCCCGGGC
T ss_pred CCcCCccCCEEecceeEEE---CCeEecccCC
Confidence 3679999999877776653 5789999883
No 138
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=67.20 E-value=0.84 Score=33.02 Aligned_cols=45 Identities=20% Similarity=0.374 Sum_probs=29.7
Q ss_pred CcccccccccccCceeeecCCCCCcccHhhHHHHHhcC----CCCcccCC
Q 028116 166 SCCSICLQDIIVGELARSLPHCHHTFHLACVDKWLIRH----GSCPVCRR 211 (213)
Q Consensus 166 ~~C~ICle~~~~ge~v~~Lp~C~H~FH~~CI~~WL~~~----~sCPlCR~ 211 (213)
..|.+|.+.-.+. .+..-..|...||..|+++=|... -.||.|+.
T Consensus 55 ~~C~~C~~~~~~~-~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~ 103 (111)
T 2ysm_A 55 KVCQNCKQSGEDS-KMLVCDTCDKGYHTFCLQPVMKSVPTNGWKCKNCRI 103 (111)
T ss_dssp CCCTTTCCCSCCT-TEEECSSSCCEEEGGGSSSCCSSCCSSCCCCHHHHC
T ss_pred CcccccCccCCCC-CeeECCCCCcHHhHHhcCCccccCCCCCcCCcCCcC
Confidence 3577887653332 344444699999999998655432 25888864
No 139
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=66.26 E-value=0.85 Score=31.92 Aligned_cols=49 Identities=22% Similarity=0.522 Sum_probs=33.3
Q ss_pred CCCCccccccccccc-CceeeecCCCCCcccHhhHHHHHhc--------CCCCcccCC
Q 028116 163 TQSSCCSICLQDIIV-GELARSLPHCHHTFHLACVDKWLIR--------HGSCPVCRR 211 (213)
Q Consensus 163 ~~~~~C~ICle~~~~-ge~v~~Lp~C~H~FH~~CI~~WL~~--------~~sCPlCR~ 211 (213)
+.+..|.||.+.-.. ++.+..--.|...||..|++.=|.. .=.||.|+.
T Consensus 14 e~~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~ 71 (88)
T 1wev_A 14 EMGLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTR 71 (88)
T ss_dssp HHCCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHH
T ss_pred CCCCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccc
Confidence 346789999976432 2344455569999999999865542 125988864
No 140
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=65.94 E-value=3.8 Score=26.93 Aligned_cols=28 Identities=25% Similarity=0.481 Sum_probs=17.0
Q ss_pred CCcccccccccccCceeeecCCCCCcccHhh
Q 028116 165 SSCCSICLQDIIVGELARSLPHCHHTFHLAC 195 (213)
Q Consensus 165 ~~~C~ICle~~~~ge~v~~Lp~C~H~FH~~C 195 (213)
...|+.|-+.+..++.+.. -+..||..|
T Consensus 9 ~~~C~~C~~~I~~~~~v~a---~~~~~H~~C 36 (76)
T 2cu8_A 9 ASKCPKCDKTVYFAEKVSS---LGKDWHKFC 36 (76)
T ss_dssp CCBCTTTCCBCCTTTEEEE---TTEEEETTT
T ss_pred CCCCcCCCCEeECCeEEEE---CCeEeeCCC
Confidence 3567777777666565443 345666666
No 141
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=65.85 E-value=3.3 Score=27.23 Aligned_cols=43 Identities=14% Similarity=0.115 Sum_probs=24.2
Q ss_pred CCCcccccccccccCceeeecCCCCCcccH-hhHHHHHhcCCCCcccCC
Q 028116 164 QSSCCSICLQDIIVGELARSLPHCHHTFHL-ACVDKWLIRHGSCPVCRR 211 (213)
Q Consensus 164 ~~~~C~ICle~~~~ge~v~~Lp~C~H~FH~-~CI~~WL~~~~sCPlCR~ 211 (213)
+--.|..|...+..+.... .=+..|+. .|..+- -...|--|..
T Consensus 26 ~CF~C~~C~~~L~~~~~~~---~~g~~yC~~~cy~~~--f~~~C~~C~~ 69 (76)
T 1iml_A 26 PCLKCEKCGKTLTSGGHAE---HEGKPYCNHPCYSAM--FGPKGFGRGG 69 (76)
T ss_dssp TTCBCTTTCCBCCTTTEEE---ETTEEEETTTHHHHH--SSCCCSSCCC
T ss_pred CCCCccccCccCCCCceEC---cCCeEeeCHHHHHHH--hCccCCCcCC
Confidence 4466788877776653221 13566777 576543 2345666643
No 142
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=65.76 E-value=1.3 Score=27.69 Aligned_cols=42 Identities=21% Similarity=0.467 Sum_probs=28.1
Q ss_pred cccccccccCceeeecCCCCCcccHhhHHHHH---hcCCCCcccCC
Q 028116 169 SICLQDIIVGELARSLPHCHHTFHLACVDKWL---IRHGSCPVCRR 211 (213)
Q Consensus 169 ~ICle~~~~ge~v~~Lp~C~H~FH~~CI~~WL---~~~~sCPlCR~ 211 (213)
.||.+....+..+.-- +|...||..|+.--- ..+-.||.|+.
T Consensus 7 C~C~~~~~~~~MI~Cd-~C~~W~H~~Cvgi~~~~~~~~~~C~~C~~ 51 (52)
T 3o7a_A 7 CFCMKPFAGRPMIECN-ECHTWIHLSCAKIRKSNVPEVFVCQKCRD 51 (52)
T ss_dssp STTCCBCTTCCEEECT-TTCCEEETTTTTCCGGGCCSSCCCHHHHT
T ss_pred EEeCCcCCCCCEEEcC-CCCccccccccCCCcccCCCcEECcCCCC
Confidence 4787765533444444 599999999986322 23457999975
No 143
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=64.82 E-value=1.8 Score=31.07 Aligned_cols=39 Identities=18% Similarity=0.418 Sum_probs=23.2
Q ss_pred CcccccccccccCceeeecCCCCCcccHhhHHHHHhcCCCCcccCCCC
Q 028116 166 SCCSICLQDIIVGELARSLPHCHHTFHLACVDKWLIRHGSCPVCRRDV 213 (213)
Q Consensus 166 ~~C~ICle~~~~ge~v~~Lp~C~H~FH~~CI~~WL~~~~sCPlCR~~v 213 (213)
..||+|.++++... ++.++..|-.. +++..-||-|.+++
T Consensus 33 ~~CP~Cq~eL~~~g--------~~~hC~~C~~~-f~~~a~CPdC~q~L 71 (101)
T 2jne_A 33 LHCPQCQHVLDQDN--------GHARCRSCGEF-IEMKALCPDCHQPL 71 (101)
T ss_dssp CBCSSSCSBEEEET--------TEEEETTTCCE-EEEEEECTTTCSBC
T ss_pred ccCccCCCcceecC--------CEEECccccch-hhccccCcchhhHH
Confidence 78999998865422 23334444221 34566788887764
No 144
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=63.08 E-value=16 Score=25.68 Aligned_cols=49 Identities=22% Similarity=0.461 Sum_probs=35.5
Q ss_pred CCCcccccccccc---cCceeeecCCCCCcccHhhHHHHHh-cCCCCcccCCC
Q 028116 164 QSSCCSICLQDII---VGELARSLPHCHHTFHLACVDKWLI-RHGSCPVCRRD 212 (213)
Q Consensus 164 ~~~~C~ICle~~~---~ge~v~~Lp~C~H~FH~~CI~~WL~-~~~sCPlCR~~ 212 (213)
....|.||=++.. +|+.......|+--.|.+|.+-=.+ .+.+||-|+.+
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktr 67 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTR 67 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCC
T ss_pred CCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCc
Confidence 4578999999864 3444444445888899999875443 47789999875
No 145
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=62.20 E-value=3.4 Score=27.54 Aligned_cols=41 Identities=34% Similarity=0.654 Sum_probs=25.8
Q ss_pred CcccccccccccCceeeecCCCC---CcccHhhHHHHHhc----CCCCcccCC
Q 028116 166 SCCSICLQDIIVGELARSLPHCH---HTFHLACVDKWLIR----HGSCPVCRR 211 (213)
Q Consensus 166 ~~C~ICle~~~~ge~v~~Lp~C~---H~FH~~CI~~WL~~----~~sCPlCR~ 211 (213)
.-| ||.+. ..|+.+..- .|. ..||..|+. |.. .-.||.|+.
T Consensus 7 ~yC-~C~~~-~~g~MI~CD-~cdC~~~WfH~~Cvg--l~~~p~~~w~Cp~C~~ 54 (70)
T 1x4i_A 7 GYC-ICNQV-SYGEMVGCD-NQDCPIEWFHYGCVG--LTEAPKGKWYCPQCTA 54 (70)
T ss_dssp CCS-TTSCC-CCSSEECCS-CTTCSCCCEEHHHHT--CSSCCSSCCCCHHHHH
T ss_pred eEE-EcCCC-CCCCEeEeC-CCCCCccCCcccccc--cCcCCCCCEECCCCCc
Confidence 344 69876 345555444 353 799999997 332 235999864
No 146
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=60.14 E-value=1.1 Score=30.97 Aligned_cols=37 Identities=32% Similarity=0.801 Sum_probs=22.9
Q ss_pred ccccccccccc--CceeeecCCCCCcccHhhHHHHHhcC
Q 028116 167 CCSICLQDIIV--GELARSLPHCHHTFHLACVDKWLIRH 203 (213)
Q Consensus 167 ~C~ICle~~~~--ge~v~~Lp~C~H~FH~~CI~~WL~~~ 203 (213)
-||=|-..+.. +.....-|+|+|.|+..|-..|=++|
T Consensus 27 wCP~C~~~~~~~~~~~~v~C~~C~~~FC~~C~~~w~~~H 65 (86)
T 2ct7_A 27 WCAQCSFGFIYEREQLEATCPQCHQTFCVRCKRQWEEQH 65 (86)
T ss_dssp CCSSSCCCEECCCSCSCEECTTTCCEECSSSCSBCCTTT
T ss_pred ECcCCCchheecCCCCceEeCCCCCccccccCCchhhcC
Confidence 36656443322 22334566799999999988874333
No 147
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=60.04 E-value=6.7 Score=26.24 Aligned_cols=29 Identities=28% Similarity=0.633 Sum_probs=20.6
Q ss_pred CCCcccccccccccCceeeecCCCCCcccHhh
Q 028116 164 QSSCCSICLQDIIVGELARSLPHCHHTFHLAC 195 (213)
Q Consensus 164 ~~~~C~ICle~~~~ge~v~~Lp~C~H~FH~~C 195 (213)
....|+-|-+.+..++.+..+ +..||..|
T Consensus 14 ~~~~C~~C~~~I~~~~~v~a~---~~~wH~~C 42 (80)
T 2dj7_A 14 GPSHCAGCKEEIKHGQSLLAL---DKQWHVSC 42 (80)
T ss_dssp SCSCCTTTCCCCSSSCCEEET---TEEECTTT
T ss_pred CCCCCcCcCCeeCCCeEEEEC---Cccccccc
Confidence 456788998888777766544 56777776
No 148
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=59.00 E-value=1.2 Score=32.50 Aligned_cols=45 Identities=20% Similarity=0.491 Sum_probs=30.6
Q ss_pred CcccccccccccCceeeecCCCCCcccHhhHHHHHhcCC----CCcccCC
Q 028116 166 SCCSICLQDIIVGELARSLPHCHHTFHLACVDKWLIRHG----SCPVCRR 211 (213)
Q Consensus 166 ~~C~ICle~~~~ge~v~~Lp~C~H~FH~~CI~~WL~~~~----sCPlCR~ 211 (213)
..|.||.+.-..++.+.-- .|...||..|+++=|...+ .||.|+.
T Consensus 59 ~~C~~C~~~~~~~~ll~Cd-~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~ 107 (114)
T 2kwj_A 59 KSCILCGTSENDDQLLFCD-DCDRGYHMYCLNPPVAEPPEGSWSCHLCWE 107 (114)
T ss_dssp CCCTTTTCCTTTTTEEECS-SSCCEEETTTSSSCCSSCCSSCCCCHHHHH
T ss_pred CccCcccccCCCCceEEcC-CCCccccccccCCCccCCCCCCeECccccc
Confidence 4688888764444555444 5999999999986444322 4888864
No 149
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=58.63 E-value=7.1 Score=26.17 Aligned_cols=30 Identities=27% Similarity=0.499 Sum_probs=21.5
Q ss_pred CCCCcccccccccccCceeeecCCCCCcccHhh
Q 028116 163 TQSSCCSICLQDIIVGELARSLPHCHHTFHLAC 195 (213)
Q Consensus 163 ~~~~~C~ICle~~~~ge~v~~Lp~C~H~FH~~C 195 (213)
.....|.-|-+.+..++.+.. -+..||..|
T Consensus 13 ~~~~~C~~C~~~I~~~e~v~a---~~~~wH~~C 42 (82)
T 2co8_A 13 GAGDLCALCGEHLYVLERLCV---NGHFFHRSC 42 (82)
T ss_dssp CSSCBCSSSCCBCCTTTBCCB---TTBCCBTTT
T ss_pred CCCCCCcccCCCcccceEEEE---CCCeeCCCc
Confidence 345779999988877666653 456788877
No 150
>2ek0_A Stage V sporulation protein S (spovs) related Pro; structural genomics, NPPSFA, national project O structural and functional analyses; 1.90A {Thermus thermophilus} PDB: 2eh1_A
Probab=57.13 E-value=3.8 Score=28.92 Aligned_cols=36 Identities=22% Similarity=0.364 Sum_probs=30.2
Q ss_pred HHHHhhhcccccccc--cchhhhhhhhhHHHHHHHhhh
Q 028116 40 AITGALAGRASDCGV--LRGAGLGAIAGAVLSVELLEA 75 (213)
Q Consensus 40 a~~ga~~g~~~~~g~--~rGa~~GaiaGav~sve~~e~ 75 (213)
.+.|||+|...|.|- +|-.|-||+.-||-+|-+...
T Consensus 14 ~VAGAIA~~lRe~~~veiqAIGa~AvNqAVKAIAIARg 51 (90)
T 2ek0_A 14 SVAGAIAAMLRTKGEVEVQAIGPQAVNQAVKAIAIARG 51 (90)
T ss_dssp HHHHHHHHHHHHHSEEEEEECSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCceEEEEECHHHHHHHHHHHHHHHH
Confidence 577888888888887 889999999999999986544
No 151
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=56.64 E-value=8 Score=24.84 Aligned_cols=13 Identities=38% Similarity=0.805 Sum_probs=6.5
Q ss_pred CcccccccccccC
Q 028116 166 SCCSICLQDIIVG 178 (213)
Q Consensus 166 ~~C~ICle~~~~g 178 (213)
..|+.|-+.+..+
T Consensus 6 ~~C~~C~~~I~~~ 18 (72)
T 1x4k_A 6 SGCQECKKTIMPG 18 (72)
T ss_dssp CCBSSSCCCCCSS
T ss_pred CCCccCCCcccCC
Confidence 3455555555443
No 152
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=56.58 E-value=6.5 Score=25.07 Aligned_cols=31 Identities=19% Similarity=0.350 Sum_probs=20.1
Q ss_pred CCCcccccccccccCceeeecCCCCCcccHhhH
Q 028116 164 QSSCCSICLQDIIVGELARSLPHCHHTFHLACV 196 (213)
Q Consensus 164 ~~~~C~ICle~~~~ge~v~~Lp~C~H~FH~~CI 196 (213)
....|.-|-+.+..++.+... =+..||..|.
T Consensus 10 ~~~~C~~C~~~i~~~e~~~~~--~~~~~H~~CF 40 (72)
T 3f6q_B 10 ASATCERCKGGFAPAEKIVNS--NGELYHEQCF 40 (72)
T ss_dssp TTCBCTTTCCBCCTTCEEEEE--TTEEEETTTS
T ss_pred CCccchhcCccccCCceEEEe--CcCeeCcCCC
Confidence 346788888887776654322 3566777774
No 153
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=56.20 E-value=7.7 Score=24.93 Aligned_cols=12 Identities=33% Similarity=0.714 Sum_probs=6.4
Q ss_pred Cccccccccccc
Q 028116 166 SCCSICLQDIIV 177 (213)
Q Consensus 166 ~~C~ICle~~~~ 177 (213)
..|+-|-+.+..
T Consensus 6 ~~C~~C~~~I~~ 17 (72)
T 1wyh_A 6 SGCSACGETVMP 17 (72)
T ss_dssp CBCSSSCCBCCS
T ss_pred CCCccCCCcccc
Confidence 445555555554
No 154
>3ldt_A Outer membrane protein, OMPA family protein; OMPA-like domain, PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.30A {Legionella pneumophila}
Probab=54.23 E-value=2.7 Score=32.65 Aligned_cols=12 Identities=33% Similarity=0.675 Sum_probs=0.0
Q ss_pred hhHHHHHHHHhh
Q 028116 34 AGAFTGAITGAL 45 (213)
Q Consensus 34 ~g~~~ga~~ga~ 45 (213)
.|+++||.+|++
T Consensus 4 ~ga~~ga~~g~~ 15 (169)
T 3ldt_A 4 SGTLIGAAAGGT 15 (169)
T ss_dssp ------------
T ss_pred HHHHHHHHHHHH
Confidence 444444444444
No 155
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=54.02 E-value=9.5 Score=24.80 Aligned_cols=30 Identities=20% Similarity=0.360 Sum_probs=16.8
Q ss_pred CCCcccccccccccCceeeecCCCCCcccHhh
Q 028116 164 QSSCCSICLQDIIVGELARSLPHCHHTFHLAC 195 (213)
Q Consensus 164 ~~~~C~ICle~~~~ge~v~~Lp~C~H~FH~~C 195 (213)
....|+-|-+.+..++.+... -+..||..|
T Consensus 10 ~~~~C~~C~~~I~~~~~~~~a--~~~~~H~~C 39 (77)
T 1g47_A 10 ASATCERCKGGFAPAEKIVNS--NGELYHEQC 39 (77)
T ss_dssp CCCBCSSSCCBCCSTTTCEEE--TTEEECTTT
T ss_pred CCCCchhcCCccCCCceEEEe--CccEecccc
Confidence 346677777776654433221 345666666
No 156
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=53.09 E-value=11 Score=24.81 Aligned_cols=28 Identities=21% Similarity=0.553 Sum_probs=15.4
Q ss_pred CcccccccccccCceeeecCCCCCcccHhh
Q 028116 166 SCCSICLQDIIVGELARSLPHCHHTFHLAC 195 (213)
Q Consensus 166 ~~C~ICle~~~~ge~v~~Lp~C~H~FH~~C 195 (213)
..|+.|-+.+..++.+... =+..||.+|
T Consensus 16 ~~C~~C~~~I~~~~~~~~a--~~~~~H~~C 43 (82)
T 1x63_A 16 PKCKGCFKAIVAGDQNVEY--KGTVWHKDC 43 (82)
T ss_dssp CBCSSSCCBCCSSSCEEEC--SSCEEETTT
T ss_pred CcCccCCcccccCceEEEE--Ccccccccc
Confidence 4677777766655443221 345666665
No 157
>4ezc_A UREA transporter 1; membrane protein, channel, SLC14, structural genomics, PSI-biology, NEW YORK consortium on membrane PROT structure, nycomps; HET: BGC BOG SPL; 2.36A {Bos taurus} PDB: 4ezd_A*
Probab=52.45 E-value=15 Score=32.45 Aligned_cols=44 Identities=20% Similarity=0.377 Sum_probs=29.3
Q ss_pred HHHHHHHHHHhhhHHHHHHHHhhhccccc---ccccchhhhhhhhhHHHHHHH
Q 028116 23 ISGTLTGLFALAGAFTGAITGALAGRASD---CGVLRGAGLGAIAGAVLSVEL 72 (213)
Q Consensus 23 ~~~~~~~~~a~~g~~~ga~~ga~~g~~~~---~g~~rGa~~GaiaGav~sve~ 72 (213)
++.-..+++|+.|+++|.+++.+.|...+ .|+. ...+++.++-+
T Consensus 246 i~S~~~al~Al~Gs~~g~~~a~~lg~~~~~i~~GL~------GfN~vL~aiAl 292 (384)
T 4ezc_A 246 LSSPLMCLHAAIGSLLGIIAGLSLSAPFEDIYAGLW------GFNSSLACIAI 292 (384)
T ss_dssp HHCHHHHHHHHHHHHHHHHHHHHTTCCHHHHHTTTT------THHHHHHHHHH
T ss_pred HcCHHHHHHHHHHHHHHHHHHHHhCCCHHHHhchHH------HHHHHHHHHHH
Confidence 33344778999999999999988776543 3443 25555555544
No 158
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=52.36 E-value=5.6 Score=27.53 Aligned_cols=13 Identities=15% Similarity=0.557 Sum_probs=8.0
Q ss_pred CcccccccccccC
Q 028116 166 SCCSICLQDIIVG 178 (213)
Q Consensus 166 ~~C~ICle~~~~g 178 (213)
..||.|.+++...
T Consensus 3 ~~CP~C~~~l~~~ 15 (81)
T 2jrp_A 3 ITCPVCHHALERN 15 (81)
T ss_dssp CCCSSSCSCCEEC
T ss_pred CCCCCCCCccccC
Confidence 4577777666543
No 159
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=52.15 E-value=3 Score=36.68 Aligned_cols=37 Identities=14% Similarity=0.180 Sum_probs=0.0
Q ss_pred CCCcccccccccccCceeeecCCCCCcccHhhHHHHH
Q 028116 164 QSSCCSICLQDIIVGELARSLPHCHHTFHLACVDKWL 200 (213)
Q Consensus 164 ~~~~C~ICle~~~~ge~v~~Lp~C~H~FH~~CI~~WL 200 (213)
....|.+|...|..-..-.....||++||..|-....
T Consensus 374 ~~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~ 410 (434)
T 3mpx_A 374 HVMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKY 410 (434)
T ss_dssp -------------------------------------
T ss_pred cCCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCee
Confidence 4567999999987543333444699999999987664
No 160
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=49.67 E-value=12 Score=24.01 Aligned_cols=12 Identities=33% Similarity=0.484 Sum_probs=6.4
Q ss_pred Cccccccccccc
Q 028116 166 SCCSICLQDIIV 177 (213)
Q Consensus 166 ~~C~ICle~~~~ 177 (213)
..|.-|-+.+..
T Consensus 6 ~~C~~C~~~I~~ 17 (72)
T 1x4l_A 6 SGCAGCTNPISG 17 (72)
T ss_dssp CSBTTTTBCCCC
T ss_pred CCCcCCCccccC
Confidence 445566555543
No 161
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=49.61 E-value=14 Score=23.67 Aligned_cols=38 Identities=13% Similarity=0.098 Sum_probs=21.8
Q ss_pred CCCcccccccccccCceeeecCCCCCcccHhhHHHHHhcCC
Q 028116 164 QSSCCSICLQDIIVGELARSLPHCHHTFHLACVDKWLIRHG 204 (213)
Q Consensus 164 ~~~~C~ICle~~~~ge~v~~Lp~C~H~FH~~CI~~WL~~~~ 204 (213)
+--.|..|...+.. +.. .. .=+..||..|-.+.+.+..
T Consensus 32 ~CF~C~~C~~~L~~-~~~-~~-~~~~~yC~~cy~~~~~~~~ 69 (72)
T 1x61_A 32 GCFVCSTCRAQLRG-QHF-YA-VERRAYCEGCYVATLESGP 69 (72)
T ss_dssp TTCBCSSSCCBCTT-SCE-EE-SSSCEEEHHHHHHHHHTCS
T ss_pred cCCcccccCCcCCc-CcC-Ee-eCCeEECHHHHHHHHccCC
Confidence 34567777777642 222 12 2466777777777665433
No 162
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=49.55 E-value=11 Score=25.00 Aligned_cols=32 Identities=22% Similarity=0.496 Sum_probs=25.1
Q ss_pred CCCCcccccccccccCceeeecCCC-CCcccHhhHHHH
Q 028116 163 TQSSCCSICLQDIIVGELARSLPHC-HHTFHLACVDKW 199 (213)
Q Consensus 163 ~~~~~C~ICle~~~~ge~v~~Lp~C-~H~FH~~CI~~W 199 (213)
++..-|.||.++ -.++.+. | +-+||..|..+-
T Consensus 6 ee~pWC~ICneD----AtlrC~g-CdgDLYC~rC~rE~ 38 (67)
T 2d8v_A 6 SGLPWCCICNED----ATLRCAG-CDGDLYCARCFREG 38 (67)
T ss_dssp CCCSSCTTTCSC----CCEEETT-TTSEEECSSHHHHH
T ss_pred cCCCeeEEeCCC----CeEEecC-CCCceehHHHHHHH
Confidence 556779999988 3477886 9 889999997653
No 163
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=49.30 E-value=3.5 Score=37.67 Aligned_cols=46 Identities=24% Similarity=0.370 Sum_probs=30.0
Q ss_pred CcccccccccccCceeeecCCCCCcccHhhHHHHHh-----cCCCCcccCC
Q 028116 166 SCCSICLQDIIVGELARSLPHCHHTFHLACVDKWLI-----RHGSCPVCRR 211 (213)
Q Consensus 166 ~~C~ICle~~~~ge~v~~Lp~C~H~FH~~CI~~WL~-----~~~sCPlCR~ 211 (213)
...+||.+.+..+..+...-.|.-.||..|+.---. .+-.||.|+.
T Consensus 37 ~~yC~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~ 87 (488)
T 3kv5_D 37 PVYCVCRQPYDVNRFMIECDICKDWFHGSCVGVEEHHAVDIDLYHCPNCAV 87 (488)
T ss_dssp CEETTTTEECCTTSCEEEBTTTCCEEEHHHHTCCGGGGGGEEEBCCHHHHH
T ss_pred CeEEeCCCcCCCCCCeEEccCCCCceeeeecCcCcccccCCCEEECCCCcC
Confidence 344499988764443444445999999999852211 2357999974
No 164
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=49.22 E-value=6.8 Score=23.06 Aligned_cols=9 Identities=22% Similarity=0.327 Sum_probs=3.4
Q ss_pred HHHHHHHHh
Q 028116 36 AFTGAITGA 44 (213)
Q Consensus 36 ~~~ga~~ga 44 (213)
++.|+++|.
T Consensus 12 aIAGiVvG~ 20 (38)
T 2k1k_A 12 EIVAVIFGL 20 (38)
T ss_dssp HHHHHHHHH
T ss_pred ceeeeehHH
Confidence 333333333
No 165
>3ldt_A Outer membrane protein, OMPA family protein; OMPA-like domain, PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.30A {Legionella pneumophila}
Probab=49.02 E-value=2.8 Score=32.57 Aligned_cols=14 Identities=36% Similarity=0.548 Sum_probs=2.2
Q ss_pred hhHHHHHHHHhhhc
Q 028116 34 AGAFTGAITGALAG 47 (213)
Q Consensus 34 ~g~~~ga~~ga~~g 47 (213)
.|+.+|+++|+.+|
T Consensus 8 ~ga~~g~~~g~~ig 21 (169)
T 3ldt_A 8 IGAAAGGTVGLVAS 21 (169)
T ss_dssp ---------CCTTH
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444444
No 166
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=48.73 E-value=16 Score=24.70 Aligned_cols=27 Identities=22% Similarity=0.381 Sum_probs=14.4
Q ss_pred CCcccccccccccCceeeecCCCCCcccHhh
Q 028116 165 SSCCSICLQDIIVGELARSLPHCHHTFHLAC 195 (213)
Q Consensus 165 ~~~C~ICle~~~~ge~v~~Lp~C~H~FH~~C 195 (213)
...|.-|-+.+. ++.+.. -+..||..|
T Consensus 25 ~~~C~~C~~~I~-~~~v~a---~~~~~H~~C 51 (90)
T 2dar_A 25 TPMCAHCNQVIR-GPFLVA---LGKSWHPEE 51 (90)
T ss_dssp CCBBSSSCCBCC-SCEEEE---TTEEECTTT
T ss_pred CCCCccCCCEec-ceEEEE---CCccccccC
Confidence 455777766663 333332 345666655
No 167
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=47.10 E-value=16 Score=28.36 Aligned_cols=36 Identities=28% Similarity=0.506 Sum_probs=26.3
Q ss_pred CCCCcccccccccccCceeeec-CCCCCcccHhhHHHHHh
Q 028116 163 TQSSCCSICLQDIIVGELARSL-PHCHHTFHLACVDKWLI 201 (213)
Q Consensus 163 ~~~~~C~ICle~~~~ge~v~~L-p~C~H~FH~~CI~~WL~ 201 (213)
..+..|.||-+. ++.+..- +.|...|+..||+.++-
T Consensus 77 G~~~yC~wC~~G---g~l~~Cdn~~C~r~FC~~CI~~nvG 113 (159)
T 3a1b_A 77 GYQSYCTICCGG---REVLMCGNNNCCRCFCVECVDLLVG 113 (159)
T ss_dssp SSBSSCTTTSCC---SEEEECSSTTTCCEEEHHHHHHHTC
T ss_pred CCcceeeEecCC---CeEEeeCCCCCCCchhHHHHHHhcC
Confidence 567889999864 3333322 15999999999999974
No 168
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C
Probab=46.46 E-value=1.1 Score=29.23 Aligned_cols=48 Identities=23% Similarity=0.558 Sum_probs=31.7
Q ss_pred CCCCcccccccc-cccCceeeecCCCCCcccHhhHHHHHhcCC----CCcccCC
Q 028116 163 TQSSCCSICLQD-IIVGELARSLPHCHHTFHLACVDKWLIRHG----SCPVCRR 211 (213)
Q Consensus 163 ~~~~~C~ICle~-~~~ge~v~~Lp~C~H~FH~~CI~~WL~~~~----sCPlCR~ 211 (213)
.+...|.||+.. |-+|---..- .|.-.|+..|-.+|-.+++ .|-+||+
T Consensus 7 ~d~~~C~iC~KTKFADG~Gh~C~-yCk~r~CaRCGg~v~lr~~k~~WvC~lC~k 59 (62)
T 2a20_A 7 GDAPTCGICHKTKFADGCGHNCS-YCQTKFCARCGGRVSLRSNKVMWVCNLCRK 59 (62)
T ss_dssp SCCCCCSSSSCSCCCSSCCEEBT-TTCCEECTTSEEEEESSTTCEEEEEHHHHH
T ss_pred CCcchhhhhccceeccCCCcccc-ccCCeeecccCCEeeecCCeEEEEehhhhh
Confidence 567889999876 5554322223 3777888888777754444 3777775
No 169
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=45.27 E-value=8.5 Score=27.68 Aligned_cols=11 Identities=27% Similarity=0.896 Sum_probs=10.2
Q ss_pred ccHhhHHHHHh
Q 028116 191 FHLACVDKWLI 201 (213)
Q Consensus 191 FH~~CI~~WL~ 201 (213)
||.+|+.+|+.
T Consensus 43 FCRNCLskWy~ 53 (105)
T 2o35_A 43 FCRNCLSNWYR 53 (105)
T ss_dssp CCHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999986
No 170
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=44.99 E-value=8.6 Score=27.59 Aligned_cols=11 Identities=45% Similarity=1.213 Sum_probs=10.2
Q ss_pred ccHhhHHHHHh
Q 028116 191 FHLACVDKWLI 201 (213)
Q Consensus 191 FH~~CI~~WL~ 201 (213)
||.+|+.+|+.
T Consensus 42 FCRNCLskWy~ 52 (104)
T 3fyb_A 42 FCRNCLAKWLM 52 (104)
T ss_dssp CCHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999986
No 171
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=43.47 E-value=9.5 Score=29.74 Aligned_cols=24 Identities=29% Similarity=0.376 Sum_probs=13.0
Q ss_pred eecCCCCCcccHhhHHHHHhcCCCCcccCCC
Q 028116 182 RSLPHCHHTFHLACVDKWLIRHGSCPVCRRD 212 (213)
Q Consensus 182 ~~Lp~C~H~FH~~CI~~WL~~~~sCPlCR~~ 212 (213)
.+.+.|||++-. .-...||+|..+
T Consensus 139 ~~C~~CG~i~~~-------~~p~~CP~Cg~~ 162 (170)
T 3pwf_A 139 YICPICGYTAVD-------EAPEYCPVCGAP 162 (170)
T ss_dssp EECTTTCCEEES-------CCCSBCTTTCCB
T ss_pred eEeCCCCCeeCC-------CCCCCCCCCCCC
Confidence 334456666641 223478888653
No 172
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=43.45 E-value=17 Score=23.63 Aligned_cols=27 Identities=26% Similarity=0.492 Sum_probs=14.7
Q ss_pred Cccccccccccc--C-ceeeecCCCCCcccHhh
Q 028116 166 SCCSICLQDIIV--G-ELARSLPHCHHTFHLAC 195 (213)
Q Consensus 166 ~~C~ICle~~~~--g-e~v~~Lp~C~H~FH~~C 195 (213)
..|+-|-+.+.. . +.+.. -+..||.+|
T Consensus 6 ~~C~~C~~~I~~~g~~~~~~a---~~~~wH~~C 35 (76)
T 1x68_A 6 SGCVACSKPISGLTGAKFICF---QDSQWHSEC 35 (76)
T ss_dssp CCCTTTCCCCCTTTTCCEEEE---TTEEEEGGG
T ss_pred CCCccCCCcccCCCCceeEEE---CCcccCccc
Confidence 457777776653 2 22222 355666666
No 173
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=42.69 E-value=21 Score=23.57 Aligned_cols=27 Identities=15% Similarity=0.135 Sum_probs=13.4
Q ss_pred CCcccccccccccCceeeecCCCCCcccHhh
Q 028116 165 SSCCSICLQDIIVGELARSLPHCHHTFHLAC 195 (213)
Q Consensus 165 ~~~C~ICle~~~~ge~v~~Lp~C~H~FH~~C 195 (213)
...|.-|-+.+. ++.+.. -+..||..|
T Consensus 15 ~~~C~~C~~~I~-~~~v~a---~~~~~H~~C 41 (79)
T 2cor_A 15 KYICQKCHAIID-EQPLIF---KNDPYHPDH 41 (79)
T ss_dssp CCBCTTTCCBCC-SCCCCC---SSSCCCTTT
T ss_pred CCCCccCCCEec-ceEEEE---CcceeCCCC
Confidence 345666666655 333222 345555555
No 174
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=42.10 E-value=14 Score=26.57 Aligned_cols=36 Identities=14% Similarity=0.266 Sum_probs=20.7
Q ss_pred CCCcccccccccccCceeeecCCCCCcccHhhHHHHHh
Q 028116 164 QSSCCSICLQDIIVGELARSLPHCHHTFHLACVDKWLI 201 (213)
Q Consensus 164 ~~~~C~ICle~~~~ge~v~~Lp~C~H~FH~~CI~~WL~ 201 (213)
+--.|..|-..+..++..... =+..||..|..+.+.
T Consensus 35 ~CF~C~~C~~~L~~g~~f~~~--~g~~yC~~cy~~~~~ 70 (123)
T 2l3k_A 35 ECFKCAACQKHFSVGDRYLLI--NSDIVCEQDIYEWTK 70 (123)
T ss_dssp TTCBCTTTCCBCCTTCEEEEC--SSSEEEGGGHHHHHH
T ss_pred ccCccccCCCCCCCCCcEEee--CCEEEcHHHhHHHhc
Confidence 345577777666555433222 356677777666554
No 175
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=41.80 E-value=15 Score=23.46 Aligned_cols=32 Identities=9% Similarity=0.207 Sum_probs=14.3
Q ss_pred CcccccccccccCceeeecCCCCCcccHhhHHHHH
Q 028116 166 SCCSICLQDIIVGELARSLPHCHHTFHLACVDKWL 200 (213)
Q Consensus 166 ~~C~ICle~~~~ge~v~~Lp~C~H~FH~~CI~~WL 200 (213)
-.|..|...+..+... . .=+..|+..|..+-+
T Consensus 32 F~C~~C~~~L~~~~f~--~-~~g~~yC~~c~~~~~ 63 (70)
T 2d8x_A 32 FRCDLCQEVLADIGFV--K-NAGRHLCRPCHNREK 63 (70)
T ss_dssp SBCSSSCCBCSSSCCE--E-ETTEEECHHHHHHHH
T ss_pred CEeCCCCCcCCCCccE--e-ECCeEECHHHhhhhc
Confidence 4455555554443211 1 134555555554443
No 176
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=41.46 E-value=10 Score=30.36 Aligned_cols=25 Identities=24% Similarity=0.457 Sum_probs=14.0
Q ss_pred eeecCCCCCcccHhhHHHHHhcCCCCcccCCC
Q 028116 181 ARSLPHCHHTFHLACVDKWLIRHGSCPVCRRD 212 (213)
Q Consensus 181 v~~Lp~C~H~FH~~CI~~WL~~~~sCPlCR~~ 212 (213)
..+.+.|||++-. .....||+|..+
T Consensus 171 ~~~C~~CG~i~~g-------~~p~~CP~C~~~ 195 (202)
T 1yuz_A 171 FHLCPICGYIHKG-------EDFEKCPICFRP 195 (202)
T ss_dssp EEECSSSCCEEES-------SCCSBCTTTCCB
T ss_pred EEEECCCCCEEcC-------cCCCCCCCCCCC
Confidence 3344457777542 123478888754
No 177
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=41.43 E-value=20 Score=24.18 Aligned_cols=27 Identities=22% Similarity=0.545 Sum_probs=12.6
Q ss_pred CcccccccccccCceeeecCCCCCcccHhh
Q 028116 166 SCCSICLQDIIVGELARSLPHCHHTFHLAC 195 (213)
Q Consensus 166 ~~C~ICle~~~~ge~v~~Lp~C~H~FH~~C 195 (213)
..|.-|-+.+...+.+.. -+..||..|
T Consensus 16 ~~C~~C~~~I~~~~~v~a---~~~~~H~~C 42 (91)
T 2d8y_A 16 ETCVECQKTVYPMERLLA---NQQVFHISC 42 (91)
T ss_dssp CBCTTTCCBCCTTSEEEC---SSSEEETTT
T ss_pred CcCccCCCccCCceeEEE---CCCEECCCC
Confidence 455555555554443321 334455444
No 178
>3heq_A Major prion protein; cell membrane, disease mutation, disulfide bond, glycoprotein, golgi apparatus, GPI-anchor, lipoprotein, membrane, polymorphism; 1.80A {Homo sapiens} PDB: 2lsb_A 2k1d_A 2lej_A 2lv1_A 2lft_A 1fkc_A 1fo7_A 3haf_A 3hj5_A 1qm0_A 1qm1_A 2kun_A 3hes_A 3her_A 1b10_A 2joh_A 2fj3_A 2jom_A 2l1h_A 2l39_A ...
Probab=41.35 E-value=3.9 Score=30.73 Aligned_cols=10 Identities=50% Similarity=1.029 Sum_probs=0.7
Q ss_pred HHHHHHhhhc
Q 028116 38 TGAITGALAG 47 (213)
Q Consensus 38 ~ga~~ga~~g 47 (213)
+||++|.|.|
T Consensus 29 AGAVvGGlgG 38 (142)
T 3heq_A 29 AGAVVGGLGG 38 (142)
T ss_dssp --------CC
T ss_pred hhhhhhccch
Confidence 3444444433
No 179
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=41.24 E-value=18 Score=32.05 Aligned_cols=35 Identities=31% Similarity=0.650 Sum_probs=26.2
Q ss_pred CCCCcccccccccccCceeeec-CCCCCcccHhhHHHHH
Q 028116 163 TQSSCCSICLQDIIVGELARSL-PHCHHTFHLACVDKWL 200 (213)
Q Consensus 163 ~~~~~C~ICle~~~~ge~v~~L-p~C~H~FH~~CI~~WL 200 (213)
..+..|.+|-+. ++.+..- +.|...||..||+.++
T Consensus 91 G~~~yCr~C~~G---g~l~~Cdn~~C~r~FC~~Ci~~n~ 126 (386)
T 2pv0_B 91 GYQSYCSICCSG---ETLLICGNPDCTRCYCFECVDSLV 126 (386)
T ss_dssp SSBCSCTTTCCC---SSCEECCSTTCCCEECHHHHHHHT
T ss_pred CCcccceEcCCC---CeEEEeCCCCCCcchHHHHHHHhc
Confidence 567889999864 3433332 2599999999999998
No 180
>3arc_X Photosystem II PSBX protein; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3prq_X* 3prr_X* 3kzi_X* 3a0b_X* 3a0h_X*
Probab=39.51 E-value=14 Score=21.90 Aligned_cols=19 Identities=11% Similarity=-0.020 Sum_probs=12.2
Q ss_pred hhHHHHHHHHhhhcccccc
Q 028116 34 AGAFTGAITGALAGRASDC 52 (213)
Q Consensus 34 ~g~~~ga~~ga~~g~~~~~ 52 (213)
+|.++++++||+++....+
T Consensus 16 G~vvvv~i~~ali~VSq~D 34 (39)
T 3arc_X 16 GAVVLGLTFAVLIAISQID 34 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHheeEeccC
Confidence 4556777778877655433
No 181
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=37.97 E-value=16 Score=23.01 Aligned_cols=26 Identities=19% Similarity=0.520 Sum_probs=13.1
Q ss_pred CcccccccccccCceeeecCCCCCcccHhh
Q 028116 166 SCCSICLQDIIVGELARSLPHCHHTFHLAC 195 (213)
Q Consensus 166 ~~C~ICle~~~~ge~v~~Lp~C~H~FH~~C 195 (213)
..|+-|-+.+. ++.+.. -+..||..|
T Consensus 6 ~~C~~C~~~I~-~~~~~a---~~~~~H~~C 31 (66)
T 1nyp_A 6 PICGACRRPIE-GRVVNA---MGKQWHVEH 31 (66)
T ss_dssp CEETTTTEECC-SCEECC---TTSBEETTT
T ss_pred CCCcccCCEec-ceEEEE---CccccccCc
Confidence 45666666655 333222 345566555
No 182
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=37.72 E-value=17 Score=27.93 Aligned_cols=34 Identities=21% Similarity=0.364 Sum_probs=24.8
Q ss_pred CCCCcccccccccccC-ceeeecCCCCCcccHhhH
Q 028116 163 TQSSCCSICLQDIIVG-ELARSLPHCHHTFHLACV 196 (213)
Q Consensus 163 ~~~~~C~ICle~~~~g-e~v~~Lp~C~H~FH~~CI 196 (213)
.++..|.+|...|..- ..-.....|+|.+|..|-
T Consensus 66 ~~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~ 100 (153)
T 2zet_C 66 LNETHCARCLQPYRLLLNSRRQCLECSLFVCKSCS 100 (153)
T ss_dssp GGGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGE
T ss_pred CCCccchhhcCccccccCCCCcCCCCCchhhcccc
Confidence 3578999999986432 223444569999999996
No 183
>3bz1_X Photosystem II PSBX protein; electron transport photosystem, membrane complex, transmembrane alpha-helix; HET: CLA PHO HEM PL9 BCR DGD LHG SQD LMG LMT; 2.90A {Thermosynechococcus elongatus} PDB: 1s5l_X* 3bz2_X*
Probab=37.46 E-value=21 Score=22.29 Aligned_cols=23 Identities=17% Similarity=0.062 Sum_probs=15.1
Q ss_pred hhHHHHHHHHhhhcccccccccc
Q 028116 34 AGAFTGAITGALAGRASDCGVLR 56 (213)
Q Consensus 34 ~g~~~ga~~ga~~g~~~~~g~~r 56 (213)
+|.++++++||+++....+-+-|
T Consensus 26 G~vVvv~i~~aLi~VSq~D~v~R 48 (50)
T 3bz1_X 26 GAVVLGLTFAVLIAISQIDKVQR 48 (50)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCC-
T ss_pred HHHHHHHHHHHheeeeccCcccc
Confidence 56667778888887766554444
No 184
>2nq2_A Hypothetical ABC transporter permease protein HI1471; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=37.04 E-value=74 Score=27.22 Aligned_cols=19 Identities=11% Similarity=0.254 Sum_probs=11.9
Q ss_pred cchhHHHHHHHHHHHHHHH
Q 028116 11 LFQSIPKFIAGAISGTLTG 29 (213)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~ 29 (213)
|..++||++..++.|+...
T Consensus 59 ~~~RlPR~l~a~lvGa~la 77 (337)
T 2nq2_A 59 FQVRLPRILTALCVGAGLA 77 (337)
T ss_dssp HHTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3457788777766555443
No 185
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=36.66 E-value=11 Score=29.80 Aligned_cols=13 Identities=8% Similarity=-0.059 Sum_probs=7.5
Q ss_pred chhHHHHHHhhhH
Q 028116 92 SMADFVEDLLRGR 104 (213)
Q Consensus 92 s~~~~i~~ll~g~ 104 (213)
+..+.++.-+.|.
T Consensus 82 s~~e~l~~al~~E 94 (191)
T 1lko_A 82 DTHANLIASAAGE 94 (191)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhh
Confidence 4556666655555
No 186
>1tpx_A Prion protein, major prion protein; antibody, unknown function; 2.56A {Ovis aries} SCOP: d.6.1.1
Probab=36.59 E-value=3.7 Score=30.55 Aligned_cols=12 Identities=42% Similarity=0.744 Sum_probs=2.4
Q ss_pred HHHHHHHhhhcc
Q 028116 37 FTGAITGALAGR 48 (213)
Q Consensus 37 ~~ga~~ga~~g~ 48 (213)
-+||++|.|.|.
T Consensus 7 aaGAvvGgl~Gy 18 (121)
T 1tpx_A 7 AAGAVVGGLGGY 18 (121)
T ss_dssp -------CCTTC
T ss_pred HHhHHhhcchhH
Confidence 345555555444
No 187
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=35.84 E-value=7.4 Score=25.07 Aligned_cols=38 Identities=18% Similarity=0.423 Sum_probs=25.9
Q ss_pred CCcccccccccccCceee--ecCC--CCCcccHhhHHHHHhc
Q 028116 165 SSCCSICLQDIIVGELAR--SLPH--CHHTFHLACVDKWLIR 202 (213)
Q Consensus 165 ~~~C~ICle~~~~ge~v~--~Lp~--C~H~FH~~CI~~WL~~ 202 (213)
...||-|...++..+--- ..+. |+|.|+..|..+|-..
T Consensus 6 ~k~CP~C~~~Iek~~GCnhmtC~~~~C~~~FCw~C~~~~~~~ 47 (60)
T 1wd2_A 6 TKECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPWEPH 47 (60)
T ss_dssp CCCCTTTCCCCSSCCSCCSSSCCSSGGGSCCSSSSCSCSGGG
T ss_pred ceECcCCCCeeEeCCCCCcEEECCCCcCCEEeeCcCCCcccC
Confidence 467888888776654211 1223 8899999999998654
No 188
>2kxa_A Haemagglutinin HA2 chain peptide; fusion peptide, viral protein, immune system; NMR {Influenza a virus}
Probab=35.53 E-value=15 Score=20.25 Aligned_cols=7 Identities=57% Similarity=0.985 Sum_probs=2.9
Q ss_pred HHHHHhh
Q 028116 39 GAITGAL 45 (213)
Q Consensus 39 ga~~ga~ 45 (213)
|||+|.|
T Consensus 4 GAIAGfi 10 (30)
T 2kxa_A 4 GAIAGFI 10 (30)
T ss_dssp HHHHHHH
T ss_pred hhhhhhh
Confidence 4444433
No 189
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=35.52 E-value=9.9 Score=21.82 Aligned_cols=15 Identities=13% Similarity=0.519 Sum_probs=11.3
Q ss_pred CCcccccccccccCc
Q 028116 165 SSCCSICLQDIIVGE 179 (213)
Q Consensus 165 ~~~C~ICle~~~~ge 179 (213)
.-.||||+.++...+
T Consensus 5 GFiCP~C~~~l~s~~ 19 (34)
T 3mjh_B 5 GFICPQCMKSLGSAD 19 (34)
T ss_dssp EEECTTTCCEESSHH
T ss_pred ccCCcHHHHHcCCHH
Confidence 367999999887643
No 190
>2csz_A Synaptotagmin-like protein 4; exophilin 2, granuphilin, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=35.38 E-value=13 Score=25.37 Aligned_cols=33 Identities=15% Similarity=0.388 Sum_probs=24.8
Q ss_pred CCCCccccccccccc-CceeeecCCCCCcccHhh
Q 028116 163 TQSSCCSICLQDIIV-GELARSLPHCHHTFHLAC 195 (213)
Q Consensus 163 ~~~~~C~ICle~~~~-ge~v~~Lp~C~H~FH~~C 195 (213)
..+..|..|.+.|-. .+.-..-+.|.|..+..|
T Consensus 23 ~~~r~CarC~~~LG~l~~~g~~C~~Ck~rVC~~C 56 (76)
T 2csz_A 23 YSDRTCARCQESLGRLSPKTNTCRGCNHLVCRDC 56 (76)
T ss_dssp CCCCBCSSSCCBCSSSCTTTSEETTTTEECCTTS
T ss_pred CCccchhhhCccccccccCCCcCcccChhhcccc
Confidence 567889999999753 233445567999999988
No 191
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=34.94 E-value=22 Score=27.59 Aligned_cols=27 Identities=37% Similarity=0.664 Sum_probs=16.0
Q ss_pred cccccccccccCceeeecCCCCCcccHhh
Q 028116 167 CCSICLQDIIVGELARSLPHCHHTFHLAC 195 (213)
Q Consensus 167 ~C~ICle~~~~ge~v~~Lp~C~H~FH~~C 195 (213)
.|..|-+.+...+.+... -++.||..|
T Consensus 71 ~C~~C~~~I~~~e~~i~a--~~~~~H~~C 97 (188)
T 1rut_X 71 ACSACGQSIPASELVMRA--QGNVYHLKC 97 (188)
T ss_dssp ECTTTCCEECTTSEEEEE--TTEEECGGG
T ss_pred ccccCCCccccCcEEEEc--CCCEEeCCC
Confidence 577777766654433221 466777776
No 192
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=34.20 E-value=25 Score=23.06 Aligned_cols=28 Identities=25% Similarity=0.351 Sum_probs=14.8
Q ss_pred CcccccccccccCceeeecCCCCCcccHhh
Q 028116 166 SCCSICLQDIIVGELARSLPHCHHTFHLAC 195 (213)
Q Consensus 166 ~~C~ICle~~~~ge~v~~Lp~C~H~FH~~C 195 (213)
..|.-|-+.+..++.+... =+..||..|
T Consensus 16 ~~C~~C~~~I~~~~~~~~a--~~~~~H~~C 43 (82)
T 2ehe_A 16 NTCAECQQLIGHDSRELFY--EDRHFHEGC 43 (82)
T ss_dssp CBCTTTCCBCCSSCCBCCC--SSCCCBTTT
T ss_pred CcCccCCCccccCcEEEEe--CCccccccC
Confidence 4577777766633322211 345666665
No 193
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=33.79 E-value=26 Score=22.88 Aligned_cols=29 Identities=17% Similarity=0.346 Sum_probs=17.8
Q ss_pred CCCcccccccccccCceeeecCCCCCcccHhhH
Q 028116 164 QSSCCSICLQDIIVGELARSLPHCHHTFHLACV 196 (213)
Q Consensus 164 ~~~~C~ICle~~~~ge~v~~Lp~C~H~FH~~CI 196 (213)
....|.-|-+.+.. +.+.. -+..||..|.
T Consensus 14 ~~~~C~~C~~~I~~-~~~~a---~~~~~H~~CF 42 (79)
T 1x62_A 14 KLPMCDKCGTGIVG-VFVKL---RDRHRHPECY 42 (79)
T ss_dssp CCCCCSSSCCCCCS-SCEEC---SSCEECTTTT
T ss_pred CCCccccCCCCccC-cEEEE---CcceeCcCcC
Confidence 34678888877664 33222 4677777773
No 194
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=33.31 E-value=29 Score=22.72 Aligned_cols=26 Identities=35% Similarity=0.595 Sum_probs=13.8
Q ss_pred CcccccccccccCceeeecCCCCCcccHhh
Q 028116 166 SCCSICLQDIIVGELARSLPHCHHTFHLAC 195 (213)
Q Consensus 166 ~~C~ICle~~~~ge~v~~Lp~C~H~FH~~C 195 (213)
..|+-|-+.+. ++.+.. -+..||.+|
T Consensus 16 ~~C~~C~~~I~-~~~v~a---~~~~wH~~C 41 (81)
T 1v6g_A 16 TRCFSCDQFIE-GEVVSA---LGKTYHPDC 41 (81)
T ss_dssp CBCTTTCCBCC-SCCEEE---TTEEECTTT
T ss_pred CcCccccCEec-cceEEE---CCceeCccC
Confidence 45666666655 333332 345666655
No 195
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=33.09 E-value=21 Score=27.17 Aligned_cols=38 Identities=11% Similarity=0.101 Sum_probs=23.2
Q ss_pred CCcccccccccccCceeeecCCCCCcccHhhHHHHHhcC
Q 028116 165 SSCCSICLQDIIVGELARSLPHCHHTFHLACVDKWLIRH 203 (213)
Q Consensus 165 ~~~C~ICle~~~~ge~v~~Lp~C~H~FH~~CI~~WL~~~ 203 (213)
--.|..|-..+..|+...... =++.|+..|..+.+...
T Consensus 93 CF~C~~C~~~L~~g~~f~~~~-~g~~~C~~c~~~~~~~~ 130 (169)
T 2rgt_A 93 CFACVVCKRQLATGDEFYLME-DSRLVCKADYETAKQGG 130 (169)
T ss_dssp GCBCTTTCCBCCTTCEEEECT-TSCEEEHHHHHHHHHCC
T ss_pred CCcCCCCCCCCCCCCceEEcc-CCeEECHHHHHHHhhcc
Confidence 456777777776655433332 46777777777665543
No 196
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=32.76 E-value=9.9 Score=29.04 Aligned_cols=8 Identities=38% Similarity=1.082 Sum_probs=4.7
Q ss_pred CCcccCCC
Q 028116 205 SCPVCRRD 212 (213)
Q Consensus 205 sCPlCR~~ 212 (213)
.||.|-.+
T Consensus 150 ~Cp~CG~~ 157 (165)
T 2lcq_A 150 VCPDCGSK 157 (165)
T ss_dssp BCTTTCCB
T ss_pred cCCCCCCc
Confidence 56666543
No 197
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=32.37 E-value=31 Score=23.12 Aligned_cols=28 Identities=18% Similarity=0.414 Sum_probs=16.8
Q ss_pred CCCcccccccccccCceeeecCCCCCcccHhh
Q 028116 164 QSSCCSICLQDIIVGELARSLPHCHHTFHLAC 195 (213)
Q Consensus 164 ~~~~C~ICle~~~~ge~v~~Lp~C~H~FH~~C 195 (213)
....|.-|-+.+.. +.+.. -+..||..|
T Consensus 24 ~~~~C~~C~~~I~~-~~~~a---~~~~~H~~C 51 (89)
T 1x64_A 24 RMPLCDKCGSGIVG-AVVKA---RDKYRHPEC 51 (89)
T ss_dssp SCCBCTTTCCBCCS-CCEES---SSCEECTTT
T ss_pred cCCCcccCCCEecc-cEEEE---CCceECccC
Confidence 34568888777664 33222 456777776
No 198
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=32.32 E-value=35 Score=22.00 Aligned_cols=34 Identities=24% Similarity=0.270 Sum_probs=17.7
Q ss_pred CCCcccccccccccCceeeecCCCCCcccHhhHHHH
Q 028116 164 QSSCCSICLQDIIVGELARSLPHCHHTFHLACVDKW 199 (213)
Q Consensus 164 ~~~~C~ICle~~~~ge~v~~Lp~C~H~FH~~CI~~W 199 (213)
+--.|..|...+..++..... =+..||..|-.+.
T Consensus 30 ~CF~C~~C~~~L~~~~~f~~~--~~~~yC~~C~~~~ 63 (73)
T 1wig_A 30 SCALCVRCGQMFAEGEEMYLQ--GSSIWHPACRQAA 63 (73)
T ss_dssp TTSCCSSSCCCCCSSCCCEEE--TTEEECTTHHHHT
T ss_pred CcCEeCCCCCCCCCCCeeEee--CCEEEChHHChHh
Confidence 345566776666543322221 3456666666554
No 199
>2lq6_A Bromodomain-containing protein 1; PHD finger, metal binding protein; NMR {Homo sapiens}
Probab=32.06 E-value=32 Score=23.62 Aligned_cols=33 Identities=30% Similarity=0.675 Sum_probs=22.5
Q ss_pred CCcccccccccccCceeee-cCCCCCcccHhhHHH
Q 028116 165 SSCCSICLQDIIVGELARS-LPHCHHTFHLACVDK 198 (213)
Q Consensus 165 ~~~C~ICle~~~~ge~v~~-Lp~C~H~FH~~CI~~ 198 (213)
...|.||.+. ..|-.+.. .++|.-.||..|-.+
T Consensus 17 ~l~C~iC~~~-~~GAciqC~~~~C~~~fHv~CA~~ 50 (87)
T 2lq6_A 17 KLTCYLCKQK-GVGASIQCHKANCYTAFHVTCAQK 50 (87)
T ss_dssp CCCBTTTTBC-CSSCEEECSCTTTCCEEEHHHHHH
T ss_pred cCCCcCCCCC-CCcEeEecCCCCCCCcCcHHHHHH
Confidence 4679999653 12444432 346999999999765
No 200
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=31.99 E-value=26 Score=25.19 Aligned_cols=27 Identities=26% Similarity=0.586 Sum_probs=12.4
Q ss_pred cccccccccccCceeeecCCCCCcccHhh
Q 028116 167 CCSICLQDIIVGELARSLPHCHHTFHLAC 195 (213)
Q Consensus 167 ~C~ICle~~~~ge~v~~Lp~C~H~FH~~C 195 (213)
.|..|-+.+...|.+... -++.||..|
T Consensus 68 ~C~~C~~~I~~~e~~~~a--~~~~~H~~C 94 (131)
T 2xjy_A 68 LCASCDKRIRAYEMTMRV--KDKVYHLEC 94 (131)
T ss_dssp ECTTTCCEECTTSEEEEE--TTEEEEGGG
T ss_pred ChhhcCCccCccceeEee--CCceECccC
Confidence 455555555443322211 345555555
No 201
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=31.73 E-value=18 Score=22.91 Aligned_cols=28 Identities=11% Similarity=0.307 Sum_probs=16.7
Q ss_pred CCCcccccccccccCceeeecC--CCCCcc
Q 028116 164 QSSCCSICLQDIIVGELARSLP--HCHHTF 191 (213)
Q Consensus 164 ~~~~C~ICle~~~~ge~v~~Lp--~C~H~F 191 (213)
+-..||+|..++...+..-..+ .|++.|
T Consensus 9 ~iL~CP~c~~~L~~~~~~L~C~~~~c~~~Y 38 (56)
T 2kpi_A 9 EILACPACHAPLEERDAELICTGQDCGLAY 38 (56)
T ss_dssp TSCCCSSSCSCEEEETTEEEECSSSCCCEE
T ss_pred hheeCCCCCCcceecCCEEEcCCcCCCcEE
Confidence 3467999998865433222233 577766
No 202
>2das_A Zinc finger MYM-type protein 5; trash domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.17
Probab=31.44 E-value=44 Score=21.67 Aligned_cols=38 Identities=18% Similarity=0.388 Sum_probs=30.3
Q ss_pred CCCCcccccccccccCceeeecCCCCCcccHh-hHHHHH
Q 028116 163 TQSSCCSICLQDIIVGELARSLPHCHHTFHLA-CVDKWL 200 (213)
Q Consensus 163 ~~~~~C~ICle~~~~ge~v~~Lp~C~H~FH~~-CI~~WL 200 (213)
.-...|.-|...++.|+....-...-|.||.. ||...-
T Consensus 18 ~~~v~C~~CKk~lqKGQtAyqrkGs~~LFCS~~CL~~fs 56 (62)
T 2das_A 18 PAKITCANCKKPLQKGQTAYQRKGSAHLFCSTTCLSSFS 56 (62)
T ss_dssp CSSCBCTTTCCBCCTTSCCEECTTCCCEESSHHHHHHHC
T ss_pred ccccChhhccchhhcCceeeeecCchhheechHHHcccC
Confidence 34688999999999998665555689999976 988763
No 203
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=31.15 E-value=21 Score=27.50 Aligned_cols=12 Identities=25% Similarity=0.515 Sum_probs=5.6
Q ss_pred Cccccccccccc
Q 028116 166 SCCSICLQDIIV 177 (213)
Q Consensus 166 ~~C~ICle~~~~ 177 (213)
..|..|-+.+..
T Consensus 120 ~kC~~C~~~I~~ 131 (182)
T 2jtn_A 120 TKCAACQLGIPP 131 (182)
T ss_dssp CCCTTTCCCCCS
T ss_pred cccccCCCccCC
Confidence 345555544443
No 204
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=30.96 E-value=30 Score=21.78 Aligned_cols=33 Identities=9% Similarity=0.307 Sum_probs=14.8
Q ss_pred CCcccccccccccCceeeecCCCCCcccHhhHHHHH
Q 028116 165 SSCCSICLQDIIVGELARSLPHCHHTFHLACVDKWL 200 (213)
Q Consensus 165 ~~~C~ICle~~~~ge~v~~Lp~C~H~FH~~CI~~WL 200 (213)
--.|..|...+.... .. .. =+..|+..|..+.+
T Consensus 31 CF~C~~C~~~L~~~~-~~-~~-~~~~yC~~cy~~~f 63 (69)
T 2cur_A 31 CFVCVTCSKKLAGQR-FT-AV-EDQYYCVDCYKNFV 63 (69)
T ss_dssp TTBCTTTCCBCTTSC-EE-EC-SSCEEEHHHHHHHH
T ss_pred cCEECCCCCCCCCCc-cE-eE-CCEEECHHHhHHHh
Confidence 345566655554221 11 11 34555666555443
No 205
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=30.71 E-value=33 Score=21.63 Aligned_cols=31 Identities=13% Similarity=0.371 Sum_probs=13.6
Q ss_pred CCcccccccccccCceeeecCCCCCcccHhhHHH
Q 028116 165 SSCCSICLQDIIVGELARSLPHCHHTFHLACVDK 198 (213)
Q Consensus 165 ~~~C~ICle~~~~ge~v~~Lp~C~H~FH~~CI~~ 198 (213)
--.|..|...+..+... . .=+..|+..|..+
T Consensus 31 CF~C~~C~~~L~~~~~~--~-~~~~~yC~~cy~~ 61 (70)
T 2d8z_A 31 CFVCTACRKQLSGQRFT--A-RDDFAYCLNCFCD 61 (70)
T ss_dssp TSBCSSSCCBCTTSCCE--E-SSSSEECHHHHHH
T ss_pred CCccCCCCCcCCcCceE--e-eCCeEECHHHHHH
Confidence 34455665555332111 1 1345555555544
No 206
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=29.71 E-value=26 Score=25.42 Aligned_cols=29 Identities=21% Similarity=0.264 Sum_probs=20.1
Q ss_pred CCCcccccccccccCceeeecCCCCCcccHhh
Q 028116 164 QSSCCSICLQDIIVGELARSLPHCHHTFHLAC 195 (213)
Q Consensus 164 ~~~~C~ICle~~~~ge~v~~Lp~C~H~FH~~C 195 (213)
....|.-|-+.+...+.+.. -+..||..|
T Consensus 60 ~~~~C~~C~~~I~~~~~v~a---~~~~wH~~C 88 (123)
T 2l4z_A 60 SWKRCAGCGGKIADRFLLYA---MDSYWHSRC 88 (123)
T ss_dssp SCSBBSSSSSBCCSSSEEEE---TTEEEETTT
T ss_pred cCCcCcCCCCCcCCcEEEEe---CCcEEcccc
Confidence 34679999988776544443 467788777
No 207
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=29.12 E-value=46 Score=23.44 Aligned_cols=38 Identities=8% Similarity=-0.049 Sum_probs=20.5
Q ss_pred CCCCccccccccccc-CceeeecCCCCCcccHhhHHHHHhc
Q 028116 163 TQSSCCSICLQDIIV-GELARSLPHCHHTFHLACVDKWLIR 202 (213)
Q Consensus 163 ~~~~~C~ICle~~~~-ge~v~~Lp~C~H~FH~~CI~~WL~~ 202 (213)
.+--.|..|...+.. |.... .+=+..|+..|-.+-+..
T Consensus 28 ~~CF~C~~C~~~L~~~g~~~~--~~~g~~yC~~~y~~~f~~ 66 (114)
T 1j2o_A 28 EDCLSCDLCGCRLGEVGRRLY--YKLGRKLCRRDYLRLGGS 66 (114)
T ss_dssp TTTCCCSSSCSCCCCSSSCCC--CBTTBCCCHHHHHHHHTS
T ss_pred HhcCcccccCCchhcCCCeeE--EECCeeechHHHHHHhCc
Confidence 344567777776653 22221 124566777776665443
No 208
>3k3f_A UREA transporter; membrane protein, channel, TRAN protein, structural genomics, PSI-2; 2.30A {Desulfovibrio vulgaris} PDB: 3k3g_A 3m6e_A 3me1_A
Probab=28.87 E-value=68 Score=27.72 Aligned_cols=25 Identities=24% Similarity=0.481 Sum_probs=20.4
Q ss_pred HHHHHHhhhHHHHHHHHhhhccccc
Q 028116 27 LTGLFALAGAFTGAITGALAGRASD 51 (213)
Q Consensus 27 ~~~~~a~~g~~~ga~~ga~~g~~~~ 51 (213)
..+++|+.|+++|.+++.+.|...+
T Consensus 213 ~~al~a~~Gs~vg~~~a~~lg~~~~ 237 (340)
T 3k3f_A 213 ISALFAVIGSLVGLCTALIMHSPET 237 (340)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCHH
Confidence 3678999999999999988877543
No 209
>2qi9_A Vitamin B12 import system permease protein BTUC; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 4dbl_A 1l7v_A*
Probab=28.64 E-value=64 Score=27.53 Aligned_cols=19 Identities=16% Similarity=0.233 Sum_probs=11.9
Q ss_pred cchhHHHHHHHHHHHHHHH
Q 028116 11 LFQSIPKFIAGAISGTLTG 29 (213)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~ 29 (213)
|..++||++..++.|+...
T Consensus 53 ~~~RlPR~l~a~lvG~~La 71 (326)
T 2qi9_A 53 WQIRLPRTLAVLLVGAALA 71 (326)
T ss_dssp HHTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3457788777766555443
No 210
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=28.05 E-value=51 Score=23.49 Aligned_cols=46 Identities=11% Similarity=-0.020 Sum_probs=29.2
Q ss_pred Cccccccccccc-CceeeecCCCCCcccHhhHHHHHhcCCCCcccCCCC
Q 028116 166 SCCSICLQDIIV-GELARSLPHCHHTFHLACVDKWLIRHGSCPVCRRDV 213 (213)
Q Consensus 166 ~~C~ICle~~~~-ge~v~~Lp~C~H~FH~~CI~~WL~~~~sCPlCR~~v 213 (213)
-.|..|...+.+ +.... . +=+..||..|-.+-+..+..|-.|.++|
T Consensus 33 F~C~~C~~~L~~~~~~~~-~-~~g~~yC~~cy~~~f~~~~~C~~C~~~I 79 (122)
T 1m3v_A 33 LKCSSCQAQLGDIGTSSY-T-KSGMILCRNDYIRLFGNSGAGGSGGHMG 79 (122)
T ss_dssp HCCSSSCCCTTTSEECCE-E-ETTEEECHHHHHHHHCCCCSSSCSSCCS
T ss_pred CCcCCCCCcccccCCeEE-E-ECCeeecHHHHHHHcCCCCccccCCCCc
Confidence 467777777652 22221 1 2567788888877666555788887764
No 211
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=27.62 E-value=38 Score=21.79 Aligned_cols=28 Identities=18% Similarity=0.349 Sum_probs=17.3
Q ss_pred CCccccccccccc----CceeeecCCCCCcccHhh
Q 028116 165 SSCCSICLQDIIV----GELARSLPHCHHTFHLAC 195 (213)
Q Consensus 165 ~~~C~ICle~~~~----ge~v~~Lp~C~H~FH~~C 195 (213)
...|+-|-+.+.. .+.+.. =+..||..|
T Consensus 15 ~~~C~~C~~~I~~~g~~~~~~~a---~~~~~H~~C 46 (77)
T 2egq_A 15 AKKCAGCKNPITGFGKGSSVVAY---EGQSWHDYC 46 (77)
T ss_dssp CCCCSSSCCCCCCCSSCCCEEEE---TTEEEETTT
T ss_pred CccCcccCCcccCCCCCceeEEE---CcceeCccc
Confidence 3568888887774 233333 356777777
No 212
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=26.89 E-value=29 Score=26.88 Aligned_cols=27 Identities=22% Similarity=0.512 Sum_probs=13.7
Q ss_pred CcccccccccccCceeeecCCCCCcccHhh
Q 028116 166 SCCSICLQDIIVGELARSLPHCHHTFHLAC 195 (213)
Q Consensus 166 ~~C~ICle~~~~ge~v~~Lp~C~H~FH~~C 195 (213)
..|+.|-+.+..++.+.. =+..||..|
T Consensus 116 ~~C~~C~~~I~~~~~v~a---~~~~~H~~C 142 (192)
T 1b8t_A 116 DGCPRCGQAVYAAEKVIG---AGKSWHKSC 142 (192)
T ss_dssp EECTTTSCEECSSSCEEE---TTEEECTTT
T ss_pred CcCCCCCCEecCcEEEec---CCCccchhc
Confidence 446666666655444432 234455444
No 213
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=26.43 E-value=40 Score=21.96 Aligned_cols=11 Identities=18% Similarity=0.622 Sum_probs=4.9
Q ss_pred Ccccccccccc
Q 028116 166 SCCSICLQDII 176 (213)
Q Consensus 166 ~~C~ICle~~~ 176 (213)
-.|..|...+.
T Consensus 42 F~C~~C~~~L~ 52 (81)
T 2dlo_A 42 FTCVVCHRGLD 52 (81)
T ss_dssp CBCSSSCCBCT
T ss_pred cCcccCCCccC
Confidence 34445544443
No 214
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=25.86 E-value=16 Score=19.97 Aligned_cols=8 Identities=38% Similarity=0.978 Sum_probs=5.5
Q ss_pred CCCcccCC
Q 028116 204 GSCPVCRR 211 (213)
Q Consensus 204 ~sCPlCR~ 211 (213)
.+||+|+.
T Consensus 4 ~~CpvCk~ 11 (28)
T 2jvx_A 4 FCCPKCQY 11 (28)
T ss_dssp EECTTSSC
T ss_pred ccCccccc
Confidence 35788875
No 215
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=25.82 E-value=7.1 Score=33.54 Aligned_cols=48 Identities=17% Similarity=0.368 Sum_probs=30.7
Q ss_pred CCCCcccccccccccCceeee---cCCCCCcccHhhHHHHHhcCCCCcccCC
Q 028116 163 TQSSCCSICLQDIIVGELARS---LPHCHHTFHLACVDKWLIRHGSCPVCRR 211 (213)
Q Consensus 163 ~~~~~C~ICle~~~~ge~v~~---Lp~C~H~FH~~CI~~WL~~~~sCPlCR~ 211 (213)
.....||+|=..-..+ .++. ...=.|.+|.-|-..|--....||.|-.
T Consensus 180 ~~~~~CPvCGs~P~~s-~l~~~g~~~G~R~l~Cs~C~t~W~~~R~~C~~Cg~ 230 (309)
T 2fiy_A 180 ESRTLCPACGSPPMAG-MIRQGGKETGLRYLSCSLCACEWHYVRIKCSHCEE 230 (309)
T ss_dssp TTCSSCTTTCCCEEEE-EEEC----CCEEEEEETTTCCEEECCTTSCSSSCC
T ss_pred ccCCCCCCCCCcCcee-EEeecCCCCCcEEEEeCCCCCEEeecCcCCcCCCC
Confidence 4468899997764432 1221 1112256777788888777889999964
No 216
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=24.92 E-value=49 Score=21.37 Aligned_cols=10 Identities=20% Similarity=0.614 Sum_probs=4.6
Q ss_pred Cccccccccc
Q 028116 166 SCCSICLQDI 175 (213)
Q Consensus 166 ~~C~ICle~~ 175 (213)
-.|..|...+
T Consensus 42 F~C~~C~~~L 51 (80)
T 2cuq_A 42 LVCTGCQTPL 51 (80)
T ss_dssp CBCSSSCCBC
T ss_pred CCcccCCCcC
Confidence 3444444444
No 217
>3vhs_A ATPase wrnip1; zinc finger, ubiquitin-binding domain, ubiquitin binding, ME binding protein; 1.90A {Homo sapiens}
Probab=22.05 E-value=5.1 Score=21.62 Aligned_cols=13 Identities=23% Similarity=0.549 Sum_probs=9.2
Q ss_pred CCccccccccccc
Q 028116 165 SSCCSICLQDIIV 177 (213)
Q Consensus 165 ~~~C~ICle~~~~ 177 (213)
...||+|++.+..
T Consensus 6 ~vqcpvcqq~mpa 18 (29)
T 3vhs_A 6 QVQCPVCQQMMPA 18 (29)
T ss_dssp EEECTTTCCEEEG
T ss_pred eeeChHHHHhCcH
Confidence 4679999886543
No 218
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.98 E-value=53 Score=21.22 Aligned_cols=12 Identities=17% Similarity=0.515 Sum_probs=5.3
Q ss_pred Cccccccccccc
Q 028116 166 SCCSICLQDIIV 177 (213)
Q Consensus 166 ~~C~ICle~~~~ 177 (213)
-.|..|...+..
T Consensus 42 F~C~~C~~~L~~ 53 (80)
T 1x3h_A 42 FVCGDCFTSFST 53 (80)
T ss_dssp CBCSSSCCBSCS
T ss_pred CChhhCCCCCCC
Confidence 344444444433
No 219
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=21.96 E-value=44 Score=20.88 Aligned_cols=26 Identities=19% Similarity=0.423 Sum_probs=14.0
Q ss_pred cccccccccccC-ceeeecCCCCCccc--Hhh
Q 028116 167 CCSICLQDIIVG-ELARSLPHCHHTFH--LAC 195 (213)
Q Consensus 167 ~C~ICle~~~~g-e~v~~Lp~C~H~FH--~~C 195 (213)
.|+-|-+.+..+ +.+.. -+..|| .+|
T Consensus 4 ~C~~C~~~I~~~~~~v~a---~~~~wH~~~~C 32 (65)
T 2iyb_E 4 VCQGCHNAIDPEVQRVTY---NNFSWHASTEC 32 (65)
T ss_dssp ECTTTSSEECTTSCEEEE---TTEEEETTTTT
T ss_pred CCcCCCCeeccCceEEEE---CCCccCCCCCC
Confidence 466666666653 33332 345666 555
No 220
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=21.85 E-value=32 Score=22.48 Aligned_cols=27 Identities=22% Similarity=0.513 Sum_probs=12.8
Q ss_pred CcccccccccccCceeeecCCCCCcccHhh
Q 028116 166 SCCSICLQDIIVGELARSLPHCHHTFHLAC 195 (213)
Q Consensus 166 ~~C~ICle~~~~ge~v~~Lp~C~H~FH~~C 195 (213)
..|+.|-+.+..++.+.. -+..||.+|
T Consensus 8 ~~C~~C~~~I~~~~~~~a---~~~~~H~~C 34 (81)
T 1a7i_A 8 NKCGACGRTVYHAEEVQC---DGRSFHRCC 34 (81)
T ss_dssp CBCSSSCCBCSSTTEEEE---TTEEEESSS
T ss_pred CcCcCcCccccCceeEEe---CCccccccc
Confidence 445566555554443322 234445444
No 221
>1loi_A Cyclic 3',5'-AMP specific phosphodiesterase RD1; hydrolase, C-AMP phosphodiesterase; NMR {Rattus norvegicus} SCOP: j.51.1.1
Probab=21.07 E-value=5.4 Score=20.94 Aligned_cols=12 Identities=33% Similarity=0.916 Sum_probs=9.7
Q ss_pred cccHhhHHHHHh
Q 028116 190 TFHLACVDKWLI 201 (213)
Q Consensus 190 ~FH~~CI~~WL~ 201 (213)
.||.+|-.+||.
T Consensus 6 ffcetcskpwlv 17 (26)
T 1loi_A 6 FFCETCSKPWLV 17 (26)
T ss_dssp HHHHTSSCTTGG
T ss_pred HHHHhcCCchhh
Confidence 588889888875
Done!