BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 028120
         (213 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1BIF|A Chain A, 6-Phosphofructo-2-KinaseFRUCTOSE-2,6-Bisphosphatase
           Bifunctional Enzyme Complexed With Atp-G-S And Phosphate
          Length = 469

 Score = 29.3 bits (64), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 12/40 (30%), Positives = 23/40 (57%)

Query: 41  DQNNSSNNKSTTDCLSKKKIPSRVVSVEKGSPNRLNKNSD 80
           +QN        + C+  + I + +V V+ GSP+ +N++SD
Sbjct: 146 EQNGYKTFFVESICVDPEVIAANIVQVKLGSPDYVNRDSD 185


>pdb|2BIF|A Chain A, 6-Phosphofructo-2-KinaseFRUCTOSE-2,6-Bisphosphatase H256a
           Mutant With F6p In Phosphatase Active Site
 pdb|2BIF|B Chain B, 6-Phosphofructo-2-KinaseFRUCTOSE-2,6-Bisphosphatase H256a
           Mutant With F6p In Phosphatase Active Site
          Length = 469

 Score = 29.3 bits (64), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 12/40 (30%), Positives = 23/40 (57%)

Query: 41  DQNNSSNNKSTTDCLSKKKIPSRVVSVEKGSPNRLNKNSD 80
           +QN        + C+  + I + +V V+ GSP+ +N++SD
Sbjct: 146 EQNGYKTFFVESICVDPEVIAANIVQVKLGSPDYVNRDSD 185


>pdb|3BIF|A Chain A, 6-Phosphofructo-2-KinaseFRUCTOSE-2,6-Bisphosphatase Empty
           6-Pf-2k Active Site
          Length = 468

 Score = 29.3 bits (64), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 12/40 (30%), Positives = 23/40 (57%)

Query: 41  DQNNSSNNKSTTDCLSKKKIPSRVVSVEKGSPNRLNKNSD 80
           +QN        + C+  + I + +V V+ GSP+ +N++SD
Sbjct: 145 EQNGYKTFFVESICVDPEVIAANIVQVKLGSPDYVNRDSD 184


>pdb|2A35|A Chain A, 1.5 A Crystal Structure Of A Protein Of Unknown Function
           Pa4017 From Pseudomonas Aeruginosa Pao1, Possible
           Epimerase
 pdb|2A35|B Chain B, 1.5 A Crystal Structure Of A Protein Of Unknown Function
           Pa4017 From Pseudomonas Aeruginosa Pao1, Possible
           Epimerase
          Length = 215

 Score = 28.1 bits (61), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 7/61 (11%)

Query: 78  NSDLPMTSRKPSVTSPEKEDRYYTTRGSLGLDDSSKLFIDHLKEEKKPPV----WPRLFV 133
           + DLP+   K ++   E   R+Y    +LG D  S +F + +K E +  +    WP+L +
Sbjct: 90  DFDLPLAVGKRAL---EMGARHYLVVSALGADAKSSIFYNRVKGELEQALQEQGWPQLTI 146

Query: 134 T 134
            
Sbjct: 147 A 147


>pdb|3FWL|A Chain A, Crystal Structure Of The Full-Length Transglycosylase
           Pbp1b From Escherichia Coli
          Length = 751

 Score = 27.7 bits (60), Expect = 5.5,   Method: Composition-based stats.
 Identities = 13/35 (37%), Positives = 22/35 (62%), Gaps = 2/35 (5%)

Query: 79  SDLPMTSRKPS--VTSPEKEDRYYTTRGSLGLDDS 111
           +D P+  R+P+  V SP+ +DR Y+  G + L D+
Sbjct: 481 ADAPIALRQPNGQVWSPQNDDRRYSESGRVXLVDA 515


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.310    0.126    0.361 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,070,018
Number of Sequences: 62578
Number of extensions: 233422
Number of successful extensions: 371
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 367
Number of HSP's gapped (non-prelim): 11
length of query: 213
length of database: 14,973,337
effective HSP length: 95
effective length of query: 118
effective length of database: 9,028,427
effective search space: 1065354386
effective search space used: 1065354386
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 49 (23.5 bits)