Query 028120
Match_columns 213
No_of_seqs 99 out of 117
Neff 3.0
Searched_HMMs 13730
Date Mon Mar 25 10:24:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028120.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/028120hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2gmqa1 b.122.1.11 (A:12-113) 56.8 1.9 0.00014 31.5 1.5 24 14-37 8-32 (102)
2 d3duea1 d.98.2.1 (A:20-145) Pu 21.2 17 0.0012 25.6 1.4 29 159-187 12-46 (126)
3 d1euva_ d.3.1.7 (A:) Ulp1 prot 13.9 19 0.0014 27.0 0.2 22 164-185 37-58 (221)
4 d3elga1 d.98.2.1 (A:20-146) Pu 13.6 33 0.0024 24.4 1.4 30 158-187 11-47 (127)
5 d2eyqa2 c.37.1.19 (A:349-465) 11.0 26 0.0019 24.2 0.1 17 147-163 101-117 (117)
6 d1v54h_ a.51.1.1 (H:) Cytochro 9.4 35 0.0026 23.6 0.3 19 160-178 47-65 (79)
7 d2o62a2 b.60.1.9 (A:1-132) Unc 8.6 78 0.0057 22.5 2.0 20 17-37 94-113 (132)
8 d1w94a1 c.51.1.2 (A:1-154) Pro 8.5 66 0.0048 24.1 1.6 34 153-189 6-39 (154)
9 d1th0a_ d.3.1.7 (A:) Sentrin-s 7.9 41 0.003 24.5 0.1 23 162-184 34-56 (226)
10 d2iy1a1 d.3.1.7 (A:419-643) Se 6.1 54 0.0039 23.8 -0.0 20 165-184 37-56 (225)
No 1
>d2gmqa1 b.122.1.11 (A:12-113) Uncharacterized protein PrgU {Enterococcus faecalis [TaxId: 1351]}
Probab=56.85 E-value=1.9 Score=31.49 Aligned_cols=24 Identities=33% Similarity=0.675 Sum_probs=20.8
Q ss_pred ccccceehc-cCcceeeeeeeecCc
Q 028120 14 EATDFVLQW-GNRKRLRCCKVKKES 37 (213)
Q Consensus 14 tE~Df~LQW-GNRKRLRCvKVk~~~ 37 (213)
-|-|+-||| ||+-||--+||++..
T Consensus 8 QEK~~~~~W~G~~G~L~~i~~K~~~ 32 (102)
T d2gmqa1 8 QEKDLTLQWRGNTGKLVKVRLKNTR 32 (102)
T ss_dssp EGGGEEEEEGGGTSBEEEEEECHHH
T ss_pred chhhheeEeecccceEEEEEeeCCc
Confidence 378999999 999999999998654
No 2
>d3duea1 d.98.2.1 (A:20-145) Putative periplasmic protein BVU2987 {Bacteroides vulgatus [TaxId: 821]}
Probab=21.17 E-value=17 Score=25.56 Aligned_cols=29 Identities=21% Similarity=0.071 Sum_probs=23.3
Q ss_pred hhHHHHHHhhhcCCCcccccccccc------eecc
Q 028120 159 RAKLIQRSILLVSPGAWLSDLCRER------YEVR 187 (213)
Q Consensus 159 RpK~VQk~ld~lfPGlwL~~vt~d~------Y~V~ 187 (213)
=|..||..|..-|||.-..++-.+. |+|-
T Consensus 12 LP~~vq~fi~~~fp~a~i~~ve~e~~~~~~~Y~V~ 46 (126)
T d3duea1 12 LPQTAQTFIKTHFPDNKVAMAKMETDWFDKSYDVI 46 (126)
T ss_dssp SCHHHHHHHHHHCTTCCEEEEEEEEETTEEEEEEE
T ss_pred CcHHHHHHHHHHCCCCceEEEEEecCCccEEEEEE
Confidence 3789999999999999887665554 7774
No 3
>d1euva_ d.3.1.7 (A:) Ulp1 protease C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=13.86 E-value=19 Score=26.99 Aligned_cols=22 Identities=27% Similarity=0.496 Sum_probs=17.2
Q ss_pred HHHhhhcCCCccccccccccee
Q 028120 164 QRSILLVSPGAWLSDLCRERYE 185 (213)
Q Consensus 164 Qk~ld~lfPGlwL~~vt~d~Y~ 185 (213)
++.|+.|.||.||.|---+.|-
T Consensus 37 ~~Dl~~L~~~~WLnD~iIn~y~ 58 (221)
T d1euva_ 37 VRDFKTLAPRRWLNDTIIEFFM 58 (221)
T ss_dssp HHHHGGGSTTCCCBHHHHHHHH
T ss_pred HHHHhhcCCCcccCcHHHHHHH
Confidence 4678889999999987666653
No 4
>d3elga1 d.98.2.1 (A:20-146) Putative periplasmic protein BVU2443 {Bacteroides vulgatus [TaxId: 821]}
Probab=13.56 E-value=33 Score=24.43 Aligned_cols=30 Identities=13% Similarity=0.102 Sum_probs=22.6
Q ss_pred hhhHHHHHHhhhcCCCcccccc--ccc-----ceecc
Q 028120 158 KRAKLIQRSILLVSPGAWLSDL--CRE-----RYEVR 187 (213)
Q Consensus 158 KRpK~VQk~ld~lfPGlwL~~v--t~d-----~Y~V~ 187 (213)
.=|..+|.-|..-|||.-...+ ..+ .|+|-
T Consensus 11 ~LP~~a~~fi~~~Fp~a~I~~~~~e~~~~~~~~YeV~ 47 (127)
T d3elga1 11 KLPVAAREMIGKHFSQTKVAYIKIEKDLFQTTSYDVK 47 (127)
T ss_dssp GSCHHHHHHHHHHCTTSCEEEEEEEECTTCCEEEEEE
T ss_pred hCCHHHHHHHHHHCCCCceEEEEEecCCccccEEEEE
Confidence 3467999999999999966655 333 58885
No 5
>d2eyqa2 c.37.1.19 (A:349-465) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]}
Probab=11.02 E-value=26 Score=24.19 Aligned_cols=17 Identities=18% Similarity=0.358 Sum_probs=12.4
Q ss_pred hhcCCCCCCcchhhHHH
Q 028120 147 MKGCKPSQRPKKRAKLI 163 (213)
Q Consensus 147 m~G~kpprRPKKRpK~V 163 (213)
|.|.+..||++++-|+|
T Consensus 101 lfG~r~~~~~r~~rr~v 117 (117)
T d2eyqa2 101 LLGERVARRRQDSRRTI 117 (117)
T ss_dssp HSSCCCCCCCCCGGGBC
T ss_pred hhCccccccCCCCCCCC
Confidence 35888888888777653
No 6
>d1v54h_ a.51.1.1 (H:) Cytochrome c oxidase subunit h {Cow (Bos taurus) [TaxId: 9913]}
Probab=9.40 E-value=35 Score=23.61 Aligned_cols=19 Identities=21% Similarity=0.438 Sum_probs=15.8
Q ss_pred hHHHHHHhhhcCCCccccc
Q 028120 160 AKLIQRSILLVSPGAWLSD 178 (213)
Q Consensus 160 pK~VQk~ld~lfPGlwL~~ 178 (213)
=+..++...+|+|+.|+..
T Consensus 47 C~~f~~~y~sLCP~~Wiek 65 (79)
T d1v54h_ 47 CEWYRRVYKSLCPISWVST 65 (79)
T ss_dssp GHHHHHHHHHHSCHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHH
Confidence 3677889999999999864
No 7
>d2o62a2 b.60.1.9 (A:1-132) Uncharacterized protein All1756 ortholog {Nostoc punctiforme [TaxId: 272131]}
Probab=8.60 E-value=78 Score=22.49 Aligned_cols=20 Identities=20% Similarity=0.400 Sum_probs=15.9
Q ss_pred cceehccCcceeeeeeeecCc
Q 028120 17 DFVLQWGNRKRLRCCKVKKES 37 (213)
Q Consensus 17 Df~LQWGNRKRLRCvKVk~~~ 37 (213)
+|++-+|| +|+|||..-+..
T Consensus 94 E~g~l~~~-~R~RlV~~Yd~~ 113 (132)
T d2o62a2 94 ELAFVHEN-RRLRLVQLFDRN 113 (132)
T ss_dssp EEEEEETT-EEEEEEEEECTT
T ss_pred EEEeEeCC-EEEEEEEEECCC
Confidence 55566899 699999998765
No 8
>d1w94a1 c.51.1.2 (A:1-154) Probable ribosomal biogenesis protein {Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=8.54 E-value=66 Score=24.07 Aligned_cols=34 Identities=15% Similarity=0.299 Sum_probs=28.2
Q ss_pred CCCcchhhHHHHHHhhhcCCCcccccccccceecccc
Q 028120 153 SQRPKKRAKLIQRSILLVSPGAWLSDLCRERYEVREK 189 (213)
Q Consensus 153 prRPKKRpK~VQk~ld~lfPGlwL~~vt~d~Y~V~e~ 189 (213)
.|+|..|-+..-+.|-.+||+. -+++..|.+.|-
T Consensus 6 Sr~PS~rtr~F~keL~~i~P~~---~~~Rgk~~lkel 39 (154)
T d1w94a1 6 SRKPSQRTRSFSQRLSRIMGWR---YINRGKMSLRDV 39 (154)
T ss_dssp CSSCCHHHHHHHHHHHHHHTCE---ECCCTTCCHHHH
T ss_pred CCCccHHHHHHHHHHHHhCCCe---EEEcCCCcHHHH
Confidence 4789999999999999999975 477887777654
No 9
>d1th0a_ d.3.1.7 (A:) Sentrin-specific protease 2, SENP2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.88 E-value=41 Score=24.49 Aligned_cols=23 Identities=22% Similarity=0.358 Sum_probs=17.8
Q ss_pred HHHHHhhhcCCCcccccccccce
Q 028120 162 LIQRSILLVSPGAWLSDLCRERY 184 (213)
Q Consensus 162 ~VQk~ld~lfPGlwL~~vt~d~Y 184 (213)
.-++.|+.|-||.||.|.--+.|
T Consensus 34 i~~~Dl~~L~~~~WLnD~iI~~y 56 (226)
T d1th0a_ 34 ITRGDIQTLKNYHWLNDEVINFY 56 (226)
T ss_dssp EEHHHHGGGSTTCCCCHHHHHHH
T ss_pred eEHHHHHhcCCCcccccHHHHHH
Confidence 33577888999999999666655
No 10
>d2iy1a1 d.3.1.7 (A:419-643) Sentrin-specific protease 1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.08 E-value=54 Score=23.79 Aligned_cols=20 Identities=25% Similarity=0.405 Sum_probs=13.8
Q ss_pred HHhhhcCCCcccccccccce
Q 028120 165 RSILLVSPGAWLSDLCRERY 184 (213)
Q Consensus 165 k~ld~lfPGlwL~~vt~d~Y 184 (213)
+-|+.|.||.||.|.--+.|
T Consensus 37 ~Dl~~L~~~~wLnd~iI~~y 56 (225)
T d2iy1a1 37 KDIQTLNHLNWLNDEIINFY 56 (225)
T ss_dssp HHHHTTSTTCCCBHHHHHHH
T ss_pred HHHHHhcCCcchhhHHHHHH
Confidence 44556778889998665544
Done!