BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028123
(213 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O65359|SYP41_ARATH Syntaxin-41 OS=Arabidopsis thaliana GN=SYP41 PE=1 SV=1
Length = 322
Score = 310 bits (795), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 148/190 (77%), Positives = 174/190 (91%), Gaps = 1/190 (0%)
Query: 1 MATRNRTLIYKRYRDALKTVRVPTSTSPLQSSGKSSCSGPVIELVNSSLLNPNRNYAPLS 60
MATRNRTL++++YR++L++VR P S+S L + +S GPVIE+ ++SLLNPNR+YAP+S
Sbjct: 1 MATRNRTLLFRKYRNSLRSVRAPLSSSSLTGT-RSGGVGPVIEMASTSLLNPNRSYAPIS 59
Query: 61 TEDPGNSSRGAVTVGLPPAWVDVSEEIATNVQRARTKMAELARAHAKALMPSFGDGKEDQ 120
TEDPG SS+GA+TVGLPPAWVDVSEEI+ N+QRARTKMAEL +AHAKALMPSFGDGKEDQ
Sbjct: 60 TEDPGTSSKGAITVGLPPAWVDVSEEISVNIQRARTKMAELGKAHAKALMPSFGDGKEDQ 119
Query: 121 HAIESLTQEITNILKRSEKRLQQLSAAGPSEDSNVRKNVQRSLATDLQNLSMELRKKQST 180
H IESLTQEIT +LK+SEK+LQ+LSA+GPSEDSNVRKNVQRSLATDLQ LSMELRKKQST
Sbjct: 120 HNIESLTQEITFLLKKSEKQLQRLSASGPSEDSNVRKNVQRSLATDLQLLSMELRKKQST 179
Query: 181 YLKRLRQQKE 190
YLKRLRQQKE
Sbjct: 180 YLKRLRQQKE 189
>sp|Q9SUJ1|SYP43_ARATH Syntaxin-43 OS=Arabidopsis thaliana GN=SYP43 PE=2 SV=2
Length = 331
Score = 303 bits (777), Expect = 5e-82, Method: Compositional matrix adjust.
Identities = 145/197 (73%), Positives = 171/197 (86%), Gaps = 7/197 (3%)
Query: 1 MATRNRTLIYKRYRDALKTVRVPTSTSPLQS-------SGKSSCSGPVIELVNSSLLNPN 53
MATRNRTL++++YR++L++VR P +S + +G S GPVIE+ ++SLLNPN
Sbjct: 1 MATRNRTLLFRKYRNSLRSVRAPMGSSSSSTLTEHNSLTGAKSGLGPVIEMASTSLLNPN 60
Query: 54 RNYAPLSTEDPGNSSRGAVTVGLPPAWVDVSEEIATNVQRARTKMAELARAHAKALMPSF 113
R+YAP+STEDPGNSSRG +TVGLPP WVDVSEEI+ +QRARTKMAEL +AHAKALMPSF
Sbjct: 61 RSYAPVSTEDPGNSSRGTITVGLPPDWVDVSEEISVYIQRARTKMAELGKAHAKALMPSF 120
Query: 114 GDGKEDQHAIESLTQEITNILKRSEKRLQQLSAAGPSEDSNVRKNVQRSLATDLQNLSME 173
GDGKEDQH IE+LTQE+T +LK+SEK+LQ+LSAAGPSEDSNVRKNVQRSLATDLQNLSME
Sbjct: 121 GDGKEDQHQIETLTQEVTFLLKKSEKQLQRLSAAGPSEDSNVRKNVQRSLATDLQNLSME 180
Query: 174 LRKKQSTYLKRLRQQKE 190
LRKKQSTYLKRLR QKE
Sbjct: 181 LRKKQSTYLKRLRLQKE 197
>sp|Q9SWH4|SYP42_ARATH Syntaxin-42 OS=Arabidopsis thaliana GN=SYP42 PE=1 SV=1
Length = 323
Score = 243 bits (620), Expect = 8e-64, Method: Compositional matrix adjust.
Identities = 122/195 (62%), Positives = 149/195 (76%), Gaps = 6/195 (3%)
Query: 1 MATRNRTLIYKRYRDALKTVRVPTSTSPLQSSGKSSCSGPVIELVNSSLLNPNRN-YAPL 59
MATRNRT +Y+++RDA K+ R P S S S G GPVIE+V+ S N + YAPL
Sbjct: 1 MATRNRTTVYRKHRDACKSARAPLSLSASDSFG-----GPVIEMVSGSFSRSNHSSYAPL 55
Query: 60 STEDPGNSSRGAVTVGLPPAWVDVSEEIATNVQRARTKMAELARAHAKALMPSFGDGKED 119
++ DPG SS A T+G+PPAWVD SEEI N+Q+ R KM ELA+AH+KALMP+FGD K
Sbjct: 56 NSYDPGPSSSDAFTIGMPPAWVDDSEEITFNIQKVRDKMNELAKAHSKALMPTFGDNKGI 115
Query: 120 QHAIESLTQEITNILKRSEKRLQQLSAAGPSEDSNVRKNVQRSLATDLQNLSMELRKKQS 179
+E LT EIT++L++SEKRLQ LS GPSE+SN+RKNVQRSLATDLQNLSMELR+KQS
Sbjct: 116 HREVEMLTHEITDLLRKSEKRLQMLSTRGPSEESNLRKNVQRSLATDLQNLSMELRRKQS 175
Query: 180 TYLKRLRQQKEVHEE 194
TYLKRL+QQKE +E
Sbjct: 176 TYLKRLQQQKEGQDE 190
>sp|Q8BVI5|STX16_MOUSE Syntaxin-16 OS=Mus musculus GN=Stx16 PE=1 SV=3
Length = 326
Score = 87.0 bits (214), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 52/130 (40%), Positives = 73/130 (56%), Gaps = 5/130 (3%)
Query: 71 AVTVGLPPAWVDVSEEIATNVQRARTKMAELARAHAKAL-MPSFGDGKEDQHAIESLTQE 129
VT PP WVD +EI +V R + KM ELA H K L P+ D E++HAIE TQE
Sbjct: 69 GVTKRSPPKWVDGVDEIQYDVGRIKQKMKELASLHDKHLNRPTLDDSSEEEHAIEITTQE 128
Query: 130 ITNILKRSEKRLQQLSA----AGPSEDSNVRKNVQRSLATDLQNLSMELRKKQSTYLKRL 185
+T + R ++ +Q L + A ++ + +NV SLA LQ LS R QS YLKR+
Sbjct: 129 VTQLFHRCQRAVQALPSRARRACSEQEERLLRNVVASLAQALQELSTSFRHAQSDYLKRM 188
Query: 186 RQQKEVHEEF 195
+ ++E + F
Sbjct: 189 KNREERSQHF 198
>sp|O14662|STX16_HUMAN Syntaxin-16 OS=Homo sapiens GN=STX16 PE=1 SV=3
Length = 325
Score = 86.7 bits (213), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 53/129 (41%), Positives = 72/129 (55%), Gaps = 4/129 (3%)
Query: 71 AVTVGLPPAWVDVSEEIATNVQRARTKMAELARAHAKAL-MPSFGDGKEDQHAIESLTQE 129
VT PP WVD +EI +V R + KM ELA H K L P+ D E++HAIE TQE
Sbjct: 69 GVTKRPPPKWVDGVDEIQYDVGRIKQKMKELASLHDKHLNRPTLDDSSEEEHAIEITTQE 128
Query: 130 ITNILKRSEKRLQQL---SAAGPSEDSNVRKNVQRSLATDLQNLSMELRKKQSTYLKRLR 186
IT + R ++ +Q L + A ++ + NV SLA LQ LS R QS YLKR++
Sbjct: 129 ITQLFHRCQRAVQALPSRARACSEQEGRLLGNVVASLAQALQELSTSFRHAQSGYLKRMK 188
Query: 187 QQKEVHEEF 195
++E + F
Sbjct: 189 NREERSQHF 197
>sp|Q9P6P1|TLG2_SCHPO t-SNARE affecting a late Golgi compartment protein 2
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=tlg2 PE=3 SV=1
Length = 301
Score = 70.9 bits (172), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 61/190 (32%), Positives = 95/190 (50%), Gaps = 27/190 (14%)
Query: 1 MATRNRTLIYKRYRDALKTVRVPTSTSPLQSSGKSSCSGPVIELVNSSLLNPNRNYAPLS 60
MA R+RT +Y +R + S G +EL S +P L
Sbjct: 1 MAYRDRTGLYITFRQSY------------------SHHGQRLEL---SGWDPKEERQSLV 39
Query: 61 TEDPGNSSRGAVTVGLPPAWVDVSEEIATNVQRARTKMAELARAHAKALMPSFGDGKEDQ 120
+D +++ + + L P WV V EI + + R + L + +AK ++PSF D E +
Sbjct: 40 HKDNKDNTVIEMDM-LAPRWVTVEGEIDSLLLNTRRNINLLDKQYAKHVLPSFSDKTEQE 98
Query: 121 HAIESLTQEITNILKRSEKRLQ----QLSAAGPSEDSNVRKNVQRSLATDLQNLSMELRK 176
+ I+ LT +IT +R +K LQ Q ++A SE + + KN +LA+ +Q S + RK
Sbjct: 99 NEIQRLTIQITQDFQRCQKLLQVTKAQTNSATGSE-ALMAKNFLSNLASRIQTESAQFRK 157
Query: 177 KQSTYLKRLR 186
KQSTYLK+LR
Sbjct: 158 KQSTYLKKLR 167
>sp|Q08144|TLG2_YEAST T-SNARE affecting a late Golgi compartment protein 2
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=TLG2 PE=1 SV=1
Length = 397
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/195 (23%), Positives = 90/195 (46%), Gaps = 19/195 (9%)
Query: 4 RNRTLIYKRYRDALKTVRVPTSTSPLQSSGKSSCSGPV-IELVNSSLLNPNRNYAPLSTE 62
R+RT ++ YR P + + SSGK+ IE+ ++N + + + T+
Sbjct: 3 RDRTNLFLSYRRTF-----PHNITF--SSGKAPLGDDQDIEMGTYPMMNMSHDISARLTD 55
Query: 63 DPGNSSRGAVTVGLPPAWVDVSEEIATNVQRARTKMAELARAHAKALMPSFGDGKEDQHA 122
+ N + LPP ++D+++++ + R +LA+ + K +P F D D+
Sbjct: 56 ERKNKHENH-SDALPPIFIDIAQDVDDYLLEVRRLSEQLAKVYRKNSLPGFEDKSHDEAL 114
Query: 123 IESLTQEITNILKRSEKRLQQLSAAGPS----------EDSNVRKNVQRSLATDLQNLSM 172
IE L+ ++ +L++ +++L S E+ + N+Q+ A +Q S
Sbjct: 115 IEDLSFKVIQMLQKCYAVMKRLKTIYNSQFVDGKQLSREELIILDNLQKIYAEKIQTESN 174
Query: 173 ELRKKQSTYLKRLRQ 187
+ R Q+ YLK L +
Sbjct: 175 KFRVLQNNYLKFLNK 189
>sp|O15078|CE290_HUMAN Centrosomal protein of 290 kDa OS=Homo sapiens GN=CEP290 PE=1 SV=2
Length = 2479
Score = 31.6 bits (70), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 27/38 (71%)
Query: 157 KNVQRSLATDLQNLSMELRKKQSTYLKRLRQQKEVHEE 194
KN + SL +L +L+ EL+KKQ Y K LR+++E+ +E
Sbjct: 1809 KNRENSLTDNLNDLNNELQKKQKAYNKILREKEEIDQE 1846
>sp|P40032|TPA1_YEAST PKHD-type hydroxylase TPA1 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=TPA1 PE=1 SV=1
Length = 644
Score = 31.6 bits (70), Expect = 3.8, Method: Composition-based stats.
Identities = 26/99 (26%), Positives = 47/99 (47%), Gaps = 5/99 (5%)
Query: 105 HAKALMPSFGDGKEDQHAIESLTQEITNILKRSEKRLQQLSAAGPSEDSNVRKNVQRSLA 164
H + ++ K D ES+T I++ +K SE LS E + K +++
Sbjct: 299 HFEKMLKGDAGAKTDNTPKESMTSVISDSVKLSEAEFTYLSQYISPEHLS-SKGIEKLQK 357
Query: 165 TDLQNLSME----LRKKQSTYLKRLRQQKEVHEEFPCRS 199
++N S++ L +S LK++ +QKE+ +E P S
Sbjct: 358 QFVENSSLQIESFLNDDKSELLKKVIKQKELEQECPYHS 396
>sp|Q661N0|RPOC_BORGA DNA-directed RNA polymerase subunit beta' OS=Borrelia garinii
(strain PBi) GN=rpoC PE=3 SV=1
Length = 1377
Score = 31.6 bits (70), Expect = 3.9, Method: Composition-based stats.
Identities = 19/53 (35%), Positives = 32/53 (60%)
Query: 133 ILKRSEKRLQQLSAAGPSEDSNVRKNVQRSLATDLQNLSMELRKKQSTYLKRL 185
I+ R+EKR+ Q S ++S+ RK V+ S + L++LS L+ KQ + + L
Sbjct: 279 IIVRNEKRMLQESVDSLFDNSHKRKVVKGSSSRPLKSLSDALKGKQGRFRQNL 331
>sp|O51349|RPOC_BORBU DNA-directed RNA polymerase subunit beta' OS=Borrelia burgdorferi
(strain ATCC 35210 / B31 / CIP 102532 / DSM 4680)
GN=rpoC PE=3 SV=1
Length = 1377
Score = 31.6 bits (70), Expect = 3.9, Method: Composition-based stats.
Identities = 19/53 (35%), Positives = 32/53 (60%)
Query: 133 ILKRSEKRLQQLSAAGPSEDSNVRKNVQRSLATDLQNLSMELRKKQSTYLKRL 185
I+ R+EKR+ Q S ++S+ RK V+ S + L++LS L+ KQ + + L
Sbjct: 279 IIVRNEKRMLQESVDSLFDNSHKRKVVKGSSSRPLKSLSDALKGKQGRFRQNL 331
>sp|B7J1W0|RPOC_BORBZ DNA-directed RNA polymerase subunit beta' OS=Borrelia burgdorferi
(strain ZS7) GN=rpoC PE=3 SV=1
Length = 1377
Score = 31.6 bits (70), Expect = 3.9, Method: Composition-based stats.
Identities = 19/53 (35%), Positives = 32/53 (60%)
Query: 133 ILKRSEKRLQQLSAAGPSEDSNVRKNVQRSLATDLQNLSMELRKKQSTYLKRL 185
I+ R+EKR+ Q S ++S+ RK V+ S + L++LS L+ KQ + + L
Sbjct: 279 IIVRNEKRMLQESVDSLFDNSHKRKVVKGSSSRPLKSLSDALKGKQGRFRQNL 331
>sp|Q0SNB9|RPOC_BORAP DNA-directed RNA polymerase subunit beta' OS=Borrelia afzelii
(strain PKo) GN=rpoC PE=3 SV=1
Length = 1377
Score = 31.6 bits (70), Expect = 4.0, Method: Composition-based stats.
Identities = 19/53 (35%), Positives = 32/53 (60%)
Query: 133 ILKRSEKRLQQLSAAGPSEDSNVRKNVQRSLATDLQNLSMELRKKQSTYLKRL 185
I+ R+EKR+ Q S ++S+ RK V+ S + L++LS L+ KQ + + L
Sbjct: 279 IIVRNEKRMLQESVDSLFDNSHKRKVVKGSSSRPLKSLSDALKGKQGRFRQNL 331
>sp|Q6A078|CE290_MOUSE Centrosomal protein of 290 kDa OS=Mus musculus GN=Cep290 PE=1 SV=2
Length = 2472
Score = 31.6 bits (70), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 25/38 (65%)
Query: 157 KNVQRSLATDLQNLSMELRKKQSTYLKRLRQQKEVHEE 194
KN + SLA DL L+ EL+KKQ Y K LR++ + +E
Sbjct: 1803 KNKENSLADDLNELNNELQKKQKAYNKILREKDGIDQE 1840
>sp|P52347|MCP_HHV7J Major capsid protein OS=Human herpesvirus 7 (strain JI) GN=U57 PE=3
SV=1
Length = 1345
Score = 30.8 bits (68), Expect = 7.6, Method: Composition-based stats.
Identities = 16/71 (22%), Positives = 32/71 (45%), Gaps = 2/71 (2%)
Query: 8 LIYKRYRDALKTVRVPTSTSPLQSSGKSSCSGPVIELVNSSLLNPNRNYAPLSTEDPGNS 67
+ Y Y++ + +++ T + + + C P++ VN+ L NR + P P N
Sbjct: 668 IAYTHYKNIISILKLVKRTISISNFNEQLCGEPLVGFVNA--LFDNRLFPPFLNSLPKNE 725
Query: 68 SRGAVTVGLPP 78
+ +T G P
Sbjct: 726 ANAIITAGNTP 736
>sp|P82094|TMF1_HUMAN TATA element modulatory factor OS=Homo sapiens GN=TMF1 PE=1 SV=2
Length = 1093
Score = 30.4 bits (67), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 73/169 (43%), Gaps = 30/169 (17%)
Query: 18 KTVRVPTSTSPLQSSGKSS----CSGPVIELVNSSLLNPNRNYAPLSTE--DPGNSSRGA 71
+T+ +PT + ++ SG+S+ C P I LV+S+ +N + E +P S
Sbjct: 382 ETLVIPTEEAEMEESGRSATPVNCEQPDI-LVSSTPINEGQTVLDKVAEQCEPAESQ--- 437
Query: 72 VTVGLPPAWVDVSEEIATNVQRARTKMAE-----LARAHAKALMPSFGDG--------KE 118
P + E++ V+ K+ + L+ + KAL+ D KE
Sbjct: 438 ------PEALSEKEDVCKTVEFLNEKLEKREAQLLSLSKEKALLEEAFDNLKDEMFRVKE 491
Query: 119 DQHAIESLTQEITNILKRSEKRLQQLSAAGPSEDSNVRKNVQRSLATDL 167
+ +I SL E T + +EK++Q + + KN++ LAT L
Sbjct: 492 ESSSISSLKDEFTQRIAEAEKKVQLACKERDAAKKEI-KNIKEELATRL 539
>sp|P24345|KN1_MAIZE Homeotic protein knotted-1 OS=Zea mays GN=KN-1 PE=2 SV=1
Length = 359
Score = 30.4 bits (67), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 51/198 (25%), Positives = 73/198 (36%), Gaps = 43/198 (21%)
Query: 15 DALKTVRVPTSTSPLQSSGKSSCSGPVIELVNSSLLNPNRNYAPLSTEDPGNSSRGAVTV 74
DA + P+S+SP +E + + +++ Y+ L+ N V
Sbjct: 83 DACVKAKEPSSSSPYAGD---------VEAIKAKIISHPHYYSLLTAYLECNK------V 127
Query: 75 GLPPAWVDVSEEIATNVQ-RARTKMAELARAHAKALMPSFGDGKEDQHAI-----ESLT- 127
G PP EIA V+ R RT + LA A P E H + E LT
Sbjct: 128 GAPPEVSARLTEIAQEVEARQRTALGGLA----AATEPELDQFMEAYHEMLVKFREELTR 183
Query: 128 --QEITNILKRSEKRLQQLSAAGPS-----------EDSNVRKNVQRSLATDLQNLSMEL 174
QE ++R E +L LS +G S ED D + EL
Sbjct: 184 PLQEAMEFMRRVESQLNSLSISGRSLRNILSSGSSEEDQEGSGGETELPEVDAHGVDQEL 243
Query: 175 R----KKQSTYLKRLRQQ 188
+ KK S YL L+Q+
Sbjct: 244 KHHLLKKYSGYLSSLKQE 261
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.312 0.126 0.346
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 69,672,902
Number of Sequences: 539616
Number of extensions: 2540436
Number of successful extensions: 8795
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 107
Number of HSP's that attempted gapping in prelim test: 8716
Number of HSP's gapped (non-prelim): 159
length of query: 213
length of database: 191,569,459
effective HSP length: 113
effective length of query: 100
effective length of database: 130,592,851
effective search space: 13059285100
effective search space used: 13059285100
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 59 (27.3 bits)