Query 028123
Match_columns 213
No_of_seqs 136 out of 236
Neff 5.7
Searched_HMMs 29240
Date Mon Mar 25 10:28:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028123.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028123hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1fio_A SSO1 protein; four heli 99.7 7.4E-17 2.5E-21 133.5 12.6 114 77-192 4-118 (196)
2 2xhe_B Syntaxin1; exocytosis, 99.7 5.5E-16 1.9E-20 135.7 14.1 118 75-192 41-172 (279)
3 1dn1_B Syntaxin 1A, syntaxin b 99.5 5.4E-13 1.9E-17 116.5 16.8 115 75-191 28-151 (267)
4 1ez3_A Syntaxin-1A; three heli 99.5 8.6E-13 3E-17 102.2 14.9 111 76-188 6-125 (127)
5 1s94_A S-syntaxin; three helix 99.3 8.4E-12 2.9E-16 102.5 9.7 116 76-192 37-160 (180)
6 3c98_B Syntaxin-1A; protein co 98.2 0.0001 3.4E-09 61.8 16.2 113 76-189 41-161 (279)
7 2dnx_A Syntaxin-12; snare, HAB 97.8 0.0017 5.8E-08 50.7 15.5 111 76-188 8-121 (130)
8 1hs7_A Syntaxin VAM3; UP-and-D 93.0 2 7E-05 31.8 11.9 88 84-187 5-93 (97)
9 2ke4_A CDC42-interacting prote 72.3 14 0.00049 27.1 7.0 59 75-133 10-74 (98)
10 2c5k_T Syntaxin TLG1, T-snare 63.4 40 0.0014 24.4 11.5 86 78-174 6-91 (95)
11 2v71_A Nuclear distribution pr 59.7 24 0.00083 29.0 6.7 114 77-194 2-120 (189)
12 1jek_B ENV polyprotein; envelo 56.5 14 0.00049 22.5 3.6 21 120-140 6-26 (36)
13 4dnd_A Syntaxin-10, SYN10; str 52.5 75 0.0026 24.2 10.4 93 79-173 28-127 (130)
14 2l5g_B Putative uncharacterize 39.3 54 0.0018 20.6 4.3 27 80-106 7-33 (42)
15 1m1j_B Fibrinogen beta chain; 37.5 1E+02 0.0035 28.6 7.9 19 85-103 96-114 (464)
16 2z2t_D Fusion inhibitor peptid 34.0 52 0.0018 19.5 3.6 20 120-139 6-25 (36)
17 1deq_A Fibrinogen (alpha chain 32.1 75 0.0026 28.8 5.8 23 152-174 135-157 (390)
18 3vh7_B CP32M; 6-helix bundle, 30.5 55 0.0019 19.0 3.2 19 120-138 14-32 (34)
19 1vcs_A Vesicle transport throu 30.0 1.5E+02 0.0053 21.2 10.1 85 80-178 7-94 (102)
20 3vgx_D Envelope glycoprotein G 29.5 60 0.002 18.5 3.2 19 120-138 12-30 (32)
21 2pww_A Uncharacterized protein 28.5 80 0.0027 24.2 4.7 49 36-98 67-115 (127)
22 2x7r_B Transmembrane protein G 26.6 69 0.0024 21.6 3.6 20 120-139 12-31 (63)
23 3ghg_A Fibrinogen alpha chain; 26.3 2.3E+02 0.0078 26.9 8.1 83 86-170 61-150 (562)
24 3ghg_B Fibrinogen beta chain; 26.3 1.8E+02 0.0062 27.0 7.4 28 76-103 75-102 (461)
25 1mqs_B SED5P, integral membran 26.2 9.8 0.00034 24.9 -0.7 19 1-19 6-24 (50)
26 3f6n_A Virion-associated prote 23.9 1.2E+02 0.004 23.4 4.7 54 82-138 6-61 (129)
27 2l5g_A GPS2 protein, G protein 22.5 1.1E+02 0.0039 18.6 3.6 21 83-103 9-29 (38)
28 3vie_B Sifuvirtide; 6-helix bu 22.4 1.1E+02 0.0038 18.1 3.6 20 120-139 7-26 (37)
29 1ezj_A Nucleocapsid phosphopro 20.9 1.3E+02 0.0045 22.3 4.4 31 79-109 63-93 (115)
30 3o3y_A Chimeric alpha+alpha/be 20.7 1.2E+02 0.0042 18.2 3.6 20 120-139 8-27 (40)
31 3gwo_A Envelope glycoprotein G 20.1 96 0.0033 20.1 3.2 20 120-139 3-22 (54)
No 1
>1fio_A SSO1 protein; four helix bundle, alpha helix, membrane protein; 2.10A {Saccharomyces cerevisiae} SCOP: a.47.2.1
Probab=99.71 E-value=7.4e-17 Score=133.49 Aligned_cols=114 Identities=10% Similarity=0.196 Sum_probs=104.5
Q ss_pred CchHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhC-CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhHHH
Q 028123 77 PPAWVDVSEEIATNVQRARTKMAELARAHAKALM-PSFGDGKEDQHAIESLTQEITNILKRSEKRLQQLSAAGPSEDSNV 155 (213)
Q Consensus 77 pP~Wvd~~eei~~~l~~Ik~km~eL~kLh~K~L~-p~FdD~~~ee~eIE~lT~eIt~lf~~~e~~Ik~i~~~~~~~E~~i 155 (213)
||.|++.+++|...|..|+.++.+|.++|.++|. |.+++......+|+.++.+|+++|+.|+..|+.|..... +.++
T Consensus 4 ~~~f~~~~~~i~~~i~~i~~~v~~L~~l~~~~l~~~~~~~~~~~~~~i~~l~~~i~~~~~~~~~~lk~l~~~~~--~~r~ 81 (196)
T 1fio_A 4 FVGFMNKISQINRDLDKYDHTINQVDSLHKRLLTEVNEEQASHLRHSLDNFVAQATDLQFKLKNEIKSAQRDGI--HDTN 81 (196)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--TCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch--hhhH
Confidence 8999999999999999999999999999999997 666665677889999999999999999999999987542 4689
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 028123 156 RKNVQRSLATDLQNLSMELRKKQSTYLKRLRQQKEVH 192 (213)
Q Consensus 156 ~kNvq~sLA~kLQ~LS~~FRk~Q~~YL~~Lk~r~e~~ 192 (213)
++|++.+|+.++++++..||+.|+.|++++|.+.++.
T Consensus 82 ~k~~~~~L~~~f~~~~~~fq~~Q~~~~~~~k~~~~rq 118 (196)
T 1fio_A 82 KQAQAENSRQRFLKLIQDYRIVDSNYKEENKEQAKRQ 118 (196)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999987754
No 2
>2xhe_B Syntaxin1; exocytosis, exocytosis complex, snare, neuro fusion, SM PROT choanoflagellates; 2.80A {Monosiga brevicollis}
Probab=99.67 E-value=5.5e-16 Score=135.67 Aligned_cols=118 Identities=14% Similarity=0.246 Sum_probs=107.9
Q ss_pred CCCchHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhC-CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc------
Q 028123 75 GLPPAWVDVSEEIATNVQRARTKMAELARAHAKALM-PSFGDGKEDQHAIESLTQEITNILKRSEKRLQQLSAA------ 147 (213)
Q Consensus 75 ~lpP~Wvd~~eei~~~l~~Ik~km~eL~kLh~K~L~-p~FdD~~~ee~eIE~lT~eIt~lf~~~e~~Ik~i~~~------ 147 (213)
..+|.|++.+++|...|..|..++.+|.+||+++|. |.|+|......+|+.++.+|+++|+.|+..|+.|...
T Consensus 41 ~~~~~F~~~~~~I~~~I~~i~~~l~~L~~l~~~~l~t~~~~~~~~~~~~ie~l~~~i~~~~~~i~~~lk~l~~~~~~~~~ 120 (279)
T 2xhe_B 41 PFMADFFNRVKRIRDNIEDIEQAIEQVAQLHTESLVAVSKEDRDRLNEKLQDTMARISALGNKIRADLKQIEKENKRAQQ 120 (279)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 578999999999999999999999999999999988 9998877788899999999999999999999998751
Q ss_pred ------CCch-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 028123 148 ------GPSE-DSNVRKNVQRSLATDLQNLSMELRKKQSTYLKRLRQQKEVH 192 (213)
Q Consensus 148 ------~~~~-E~~i~kNvq~sLA~kLQ~LS~~FRk~Q~~YL~~Lk~r~e~~ 192 (213)
++.. |.++++|++.+|+.+|++++..||+.|+.|.+++|.+..+.
T Consensus 121 ~~~~~~~~~~~e~r~~k~~~~~L~~~f~~~~~~Fq~~Q~~y~e~~k~~~~R~ 172 (279)
T 2xhe_B 121 EGTFEDGTVSTDLRIRQSQHSSLSRKFVKVMTRYNDVQAENKRRYGENVARQ 172 (279)
T ss_dssp HHCCSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTS
T ss_pred cccccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2233 77999999999999999999999999999999999887764
No 3
>1dn1_B Syntaxin 1A, syntaxin binding protein 1; protein-protein complex, multi-subunit; 2.60A {Rattus norvegicus} PDB: 3c98_B
Probab=99.51 E-value=5.4e-13 Score=116.48 Aligned_cols=115 Identities=19% Similarity=0.344 Sum_probs=102.4
Q ss_pred CCCchHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhC-CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc------
Q 028123 75 GLPPAWVDVSEEIATNVQRARTKMAELARAHAKALM-PSFGDGKEDQHAIESLTQEITNILKRSEKRLQQLSAA------ 147 (213)
Q Consensus 75 ~lpP~Wvd~~eei~~~l~~Ik~km~eL~kLh~K~L~-p~FdD~~~ee~eIE~lT~eIt~lf~~~e~~Ik~i~~~------ 147 (213)
...|.|++.+++|...|..|...+.+|.++|.+.|. |.+++ ....+|+.++.+|+++++.|...|+.|...
T Consensus 28 ~~m~~F~~~v~~I~~~I~~I~~~v~~l~~l~~~~l~~~~~~~--~~~~~l~~l~~~i~~~~~~i~~~Lk~l~~~~~~~~~ 105 (267)
T 1dn1_B 28 RFMDEFFEQVEEIRGFIDKIAENVEEVKRKHSAILASPNPDE--KTKEELEELMSDIKKTANKVRSKLKSIEQSIEQEEG 105 (267)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCS--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 357889999999999999999999999999999987 55544 456689999999999999999999998652
Q ss_pred --CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 028123 148 --GPSEDSNVRKNVQRSLATDLQNLSMELRKKQSTYLKRLRQQKEV 191 (213)
Q Consensus 148 --~~~~E~~i~kNvq~sLA~kLQ~LS~~FRk~Q~~YL~~Lk~r~e~ 191 (213)
+++.|.++++|+..+|+.+|+++...|++.|..|..++|.+-++
T Consensus 106 ~~~~~~e~Rirk~q~~~L~~~f~~~m~~yq~~Q~~y~e~~k~~i~R 151 (267)
T 1dn1_B 106 LNRSSADLRIRKTQHSTLSRKFVEVMSEYNATQSDYRERCKGRIQR 151 (267)
T ss_dssp TTCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35678899999999999999999999999999999999986554
No 4
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=99.49 E-value=8.6e-13 Score=102.19 Aligned_cols=111 Identities=20% Similarity=0.362 Sum_probs=99.7
Q ss_pred CCchHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhC-CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-------
Q 028123 76 LPPAWVDVSEEIATNVQRARTKMAELARAHAKALM-PSFGDGKEDQHAIESLTQEITNILKRSEKRLQQLSAA------- 147 (213)
Q Consensus 76 lpP~Wvd~~eei~~~l~~Ik~km~eL~kLh~K~L~-p~FdD~~~ee~eIE~lT~eIt~lf~~~e~~Ik~i~~~------- 147 (213)
.+|.|++.+++|...|..|+..+.+|.++|.+.|. |.. ......+++.++.+|+++++.|+..|+.|...
T Consensus 6 ~m~~F~~~v~~I~~~i~~i~~~v~~l~~~~~~~L~~~~~--~~~~~~~l~~l~~~i~~~a~~ik~~Lk~l~~~~~~~~~~ 83 (127)
T 1ez3_A 6 FMDEFFEQVEEIRGFIDKIAENVEEVKRKHSAILASPNP--DEKTKEELEELMSDIKKTANKVRSKLKSIEQSIEQEEGL 83 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 47889999999999999999999999999999986 664 33466799999999999999999999998752
Q ss_pred -CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 028123 148 -GPSEDSNVRKNVQRSLATDLQNLSMELRKKQSTYLKRLRQQ 188 (213)
Q Consensus 148 -~~~~E~~i~kNvq~sLA~kLQ~LS~~FRk~Q~~YL~~Lk~r 188 (213)
+++.+.++++|+..+|..+|+++...|+..|..|..+++.|
T Consensus 84 ~~~s~~~Rir~~q~~~L~~kf~e~m~~y~~~q~~yre~~k~r 125 (127)
T 1ez3_A 84 NRSSADLRIRKTQHSTLSRKFVEVMSEYNATQSDYRERCKGR 125 (127)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567899999999999999999999999999999999875
No 5
>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1
Probab=99.30 E-value=8.4e-12 Score=102.54 Aligned_cols=116 Identities=14% Similarity=0.265 Sum_probs=95.6
Q ss_pred CCchHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc--------
Q 028123 76 LPPAWVDVSEEIATNVQRARTKMAELARAHAKALMPSFGDGKEDQHAIESLTQEITNILKRSEKRLQQLSAA-------- 147 (213)
Q Consensus 76 lpP~Wvd~~eei~~~l~~Ik~km~eL~kLh~K~L~p~FdD~~~ee~eIE~lT~eIt~lf~~~e~~Ik~i~~~-------- 147 (213)
..|.|++.+++|...|..|...+.+|.++|.+.|. ++++......+++.++.+|+++++.|+..|+.|...
T Consensus 37 ~m~~F~~~v~~I~~~i~~i~~~v~~l~~~~~~~L~-~~~~~~~~k~~le~l~~~i~~~a~~ik~~Lk~l~~~~~~~~~~~ 115 (180)
T 1s94_A 37 FMEEFFEQVEEIRAMIDKISDNVDAVKKKHSDILS-APQTDDQMKEELEELMTDIKRTANKVRGKLKTIELNIEQEEHSN 115 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccC
Confidence 34679999999999999999999999999999876 455655667899999999999999999999999752
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 028123 148 GPSEDSNVRKNVQRSLATDLQNLSMELRKKQSTYLKRLRQQKEVH 192 (213)
Q Consensus 148 ~~~~E~~i~kNvq~sLA~kLQ~LS~~FRk~Q~~YL~~Lk~r~e~~ 192 (213)
.++.+.++++|+..+|..+++++...|+..|..|..++|.+-++.
T Consensus 116 ~~s~~~Rir~~q~~~L~~kf~~~m~~yq~~q~~y~~~~K~~i~Rq 160 (180)
T 1s94_A 116 KSSADLRIRKTQYSTISRKFVEVMSDYNTTQIDYRDRCKARIKRQ 160 (180)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCCCCC----
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 245677999999999999999999999999999999998876654
No 6
>3c98_B Syntaxin-1A; protein complex, alternative splicing, cytoplasm, membrane, phosphoprotein, protein transport, transport, coiled coil; 2.60A {Rattus norvegicus}
Probab=98.16 E-value=0.0001 Score=61.84 Aligned_cols=113 Identities=19% Similarity=0.325 Sum_probs=94.7
Q ss_pred CCchHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc--------
Q 028123 76 LPPAWVDVSEEIATNVQRARTKMAELARAHAKALMPSFGDGKEDQHAIESLTQEITNILKRSEKRLQQLSAA-------- 147 (213)
Q Consensus 76 lpP~Wvd~~eei~~~l~~Ik~km~eL~kLh~K~L~p~FdD~~~ee~eIE~lT~eIt~lf~~~e~~Ik~i~~~-------- 147 (213)
.-+.|++.+++|...|..|...+.+|.++|.+.+.. ..+......+|+.++.+|+.++..|...++.|...
T Consensus 41 ~m~ef~~~ve~i~~~i~~i~~~v~el~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~i~~~~~~~~~i~ 119 (279)
T 3c98_B 41 FMDEFFEQVEEIRGFIDKIAENVEEVKRKHSAILAS-PNPDEKTKEELEELMSDIKKTANKVRSKLKSIEQSIEQEEGLN 119 (279)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-SSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Confidence 456899999999999999999999999999987753 33334445689999999999999999888877541
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 028123 148 GPSEDSNVRKNVQRSLATDLQNLSMELRKKQSTYLKRLRQQK 189 (213)
Q Consensus 148 ~~~~E~~i~kNvq~sLA~kLQ~LS~~FRk~Q~~YL~~Lk~r~ 189 (213)
....+...+.|....||..+..+...|...|+.|...++...
T Consensus 120 ~~~~~i~~~~~qtn~La~n~a~~~a~~~~~~~~~~~vva~ev 161 (279)
T 3c98_B 120 RSSADLRIRKTQHSTLSRKFVEVMSEYNATQSDYRERCKGRI 161 (279)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 245678899999999999999999999999999997766543
No 7
>2dnx_A Syntaxin-12; snare, HABC domain, UP and DOWN three helix bundle, LEFT-handed twist, membrane fusion, vesicle transport, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.77 E-value=0.0017 Score=50.66 Aligned_cols=111 Identities=13% Similarity=0.201 Sum_probs=94.1
Q ss_pred CCchHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC---Cchh
Q 028123 76 LPPAWVDVSEEIATNVQRARTKMAELARAHAKALMPSFGDGKEDQHAIESLTQEITNILKRSEKRLQQLSAAG---PSED 152 (213)
Q Consensus 76 lpP~Wvd~~eei~~~l~~Ik~km~eL~kLh~K~L~p~FdD~~~ee~eIE~lT~eIt~lf~~~e~~Ik~i~~~~---~~~E 152 (213)
-||.|-+..+.|...|.+|...+..|.++-+. |. +=-|..+.-..|-.+...+..+++.+...|+.+..-. ...+
T Consensus 8 d~~ef~~l~~~is~~I~~In~~vs~l~r~v~~-LG-T~kDt~~LR~kl~~~~~~t~~l~k~ts~~lk~L~~~~~~~~~~~ 85 (130)
T 2dnx_A 8 QLRDFSSIIQTCSGNIQRISQATAQIKNLMSQ-LG-TKQDSSKLQENLQQLQHSTNQLAKETNELLKELGSLPLPLSTSE 85 (130)
T ss_dssp CSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HC-SSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSSHHH
T ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hC-CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccch
Confidence 38999999999999999999999999998544 33 3346777788999999999999999999999998853 3445
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 028123 153 SNVRKNVQRSLATDLQNLSMELRKKQSTYLKRLRQQ 188 (213)
Q Consensus 153 ~~i~kNvq~sLA~kLQ~LS~~FRk~Q~~YL~~Lk~r 188 (213)
.+-.+=.+..|+.+++..-..|.+.|+.|..+-|.-
T Consensus 86 ~r~~k~q~~KL~~dF~~~L~~FQ~~Qr~~aekek~~ 121 (130)
T 2dnx_A 86 QRQQRLQKERLMNDFSAALNNFQAVQRRVSEKEKES 121 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 566666788899999999999999999999987653
No 8
>1hs7_A Syntaxin VAM3; UP-and-DOWN three-helix bundle insertion preceding proline in AN alpha-helix, endocytosis/exocytosis complex; NMR {Saccharomyces cerevisiae} SCOP: a.47.2.1
Probab=93.03 E-value=2 Score=31.81 Aligned_cols=88 Identities=22% Similarity=0.265 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCChHHHHHHH-HHHHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHH
Q 028123 84 SEEIATNVQRARTKMAELARAHAKALMPSFGDGKEDQHAIE-SLTQEITNILKRSEKRLQQLSAAGPSEDSNVRKNVQRS 162 (213)
Q Consensus 84 ~eei~~~l~~Ik~km~eL~kLh~K~L~p~FdD~~~ee~eIE-~lT~eIt~lf~~~e~~Ik~i~~~~~~~E~~i~kNvq~s 162 (213)
..|....+..+...|.+|+++-.+ +-+=-|..+....|+ .+...+.++-++.. .+..+. -+--
T Consensus 5 ~~d~~~li~t~s~niq~l~k~~~q--lGTkrD~~~LR~~l~~~l~~~~~~L~k~~~-~l~~l~-------------qkeR 68 (97)
T 1hs7_A 5 TKELSNLIETFAEQSRVLEKECTK--IGSKRDSKELRYKIETELIPNCTSVRDKIE-SNILIH-------------QNGK 68 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH--TTSSSCCHHHHHHHHHTHHHHHHHHHHHHH-HSTHHH-------------HCHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHH--hCCCcchHHHHHHHHHHHHHHHHHHHHHHH-Hhcccc-------------hhhH
Confidence 356677778888888888777766 566667777777788 77777666666665 222221 2566
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 028123 163 LATDLQNLSMELRKKQSTYLKRLRQ 187 (213)
Q Consensus 163 LA~kLQ~LS~~FRk~Q~~YL~~Lk~ 187 (213)
|..++..+...|...|+.|-.+-+.
T Consensus 69 L~~dF~~l~~~fQ~~qr~y~ek~~e 93 (97)
T 1hs7_A 69 LSADFKNLKTKYQSLQQSYNQRKSL 93 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 8899999999999999999987653
No 9
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=72.25 E-value=14 Score=27.11 Aligned_cols=59 Identities=20% Similarity=0.273 Sum_probs=34.5
Q ss_pred CCCch-----HHhHHHHHHHHHHHHHHHHHHHHHHHHhhh-CCCCCCChHHHHHHHHHHHHHHHH
Q 028123 75 GLPPA-----WVDVSEEIATNVQRARTKMAELARAHAKAL-MPSFGDGKEDQHAIESLTQEITNI 133 (213)
Q Consensus 75 ~lpP~-----Wvd~~eei~~~l~~Ik~km~eL~kLh~K~L-~p~FdD~~~ee~eIE~lT~eIt~l 133 (213)
.|||. --..+++++..|.+-...-+-|.+|+.-.- .|.|+|....+.+|......|-.+
T Consensus 10 ~LPpeqRkkkL~~Ki~el~~ei~ke~~~regl~Km~~vY~~nP~~GD~~s~~~~L~e~~~kid~L 74 (98)
T 2ke4_A 10 HLPPEQQRKRLQQQLEERSRELQKEVDQREALKKMKDVYEKTPQMGDPASLEPQIAETLSNIERL 74 (98)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHCGGGCCGGGSHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHHHHHHHHHHHH
Confidence 58995 344555566555555444444444444333 589988666566666666655554
No 10
>2c5k_T Syntaxin TLG1, T-snare affecting A late golgi compartment protein 1; protein transport/complex, snare, VFT complex, protein transport, phosphorylation; 2.05A {Saccharomyces cerevisiae} PDB: 2c5j_A 2c5i_T
Probab=63.36 E-value=40 Score=24.42 Aligned_cols=86 Identities=9% Similarity=0.268 Sum_probs=64.3
Q ss_pred chHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHHH
Q 028123 78 PAWVDVSEEIATNVQRARTKMAELARAHAKALMPSFGDGKEDQHAIESLTQEITNILKRSEKRLQQLSAAGPSEDSNVRK 157 (213)
Q Consensus 78 P~Wvd~~eei~~~l~~Ik~km~eL~kLh~K~L~p~FdD~~~ee~eIE~lT~eIt~lf~~~e~~Ik~i~~~~~~~E~~i~k 157 (213)
-+|.+..++|...|..+...+.. +-.+ .......+++..-++|...+....+.|..+... ++.|..=|+
T Consensus 6 DPF~~V~~D~~~ql~~l~~~~~~-------~~~~---~~~~~~~El~~~l~el~e~l~DL~~SI~i~e~~-~~~EI~~Rk 74 (95)
T 2c5k_T 6 DPFQQVVKDTKEQLNRINNYITR-------HNTA---GDDDQEEEIQDILKDVEETIVDLDRSIIVMKRD-ENEDVSGRE 74 (95)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHH-------TCCC-----CTTHHHHHHHHHHHHHHHHHHHHHHHHHHTS-TTCCCHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHH-------ccCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CHHHHHHHH
Confidence 34888888888887777776443 2222 113445578888888888888999999888766 788888899
Q ss_pred HHHHHHHHHHHHHHHHH
Q 028123 158 NVQRSLATDLQNLSMEL 174 (213)
Q Consensus 158 Nvq~sLA~kLQ~LS~~F 174 (213)
+....+-.+|..+...|
T Consensus 75 ~~v~~l~~~i~~lk~~~ 91 (95)
T 2c5k_T 75 AQVKNIKQQLDALKLRF 91 (95)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999998887776
No 11
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=59.72 E-value=24 Score=28.96 Aligned_cols=114 Identities=11% Similarity=0.113 Sum_probs=61.7
Q ss_pred CchHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCh-----HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCch
Q 028123 77 PPAWVDVSEEIATNVQRARTKMAELARAHAKALMPSFGDGK-----EDQHAIESLTQEITNILKRSEKRLQQLSAAGPSE 151 (213)
Q Consensus 77 pP~Wvd~~eei~~~l~~Ik~km~eL~kLh~K~L~p~FdD~~-----~ee~eIE~lT~eIt~lf~~~e~~Ik~i~~~~~~~ 151 (213)
||.|...-++|.+.=........++..+..- +.-|-..+ +.|.+|+.+...+..+-.++.+.=..+.......
T Consensus 2 ~~~f~s~~ee~~ywk~~~~~~~q~~~~le~E--l~EFqesSrELE~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~ 79 (189)
T 2v71_A 2 AMDFSSLKEETAYWKELSMKYKQSFQEARDE--LVEFQEGSRELEAELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKL 79 (189)
T ss_dssp --CCSSHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7888888899988866666666666666554 23444432 2355566666555555555444322222110000
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCC
Q 028123 152 DSNVRKNVQRSLATDLQNLSMELRKKQSTYLKRLRQQKEVHEE 194 (213)
Q Consensus 152 E~~i~kNvq~sLA~kLQ~LS~~FRk~Q~~YL~~Lk~r~e~~~~ 194 (213)
.-..+-.....+.||.--..+|..-..+.++|+.-+...|+
T Consensus 80 --~~~~~e~~~~~~~Lq~el~~l~~~~~~l~~~ireLEq~NDd 120 (189)
T 2v71_A 80 --EHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDD 120 (189)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 11111112245666666777788877777777776655544
No 12
>1jek_B ENV polyprotein; envelope glycoprotein, retrovirus, HIV, SIV, GP41, viral Pro; 1.50A {Synthetic} SCOP: h.3.2.1
Probab=56.51 E-value=14 Score=22.50 Aligned_cols=21 Identities=14% Similarity=0.311 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 028123 120 QHAIESLTQEITNILKRSEKR 140 (213)
Q Consensus 120 e~eIE~lT~eIt~lf~~~e~~ 140 (213)
|++|+.+|..|+.++.+++..
T Consensus 6 ereI~~~t~nIy~LLeeAq~Q 26 (36)
T 1jek_B 6 EEEIEQHEGNLSLLLREAALQ 26 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 789999999999999998864
No 13
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=52.47 E-value=75 Score=24.20 Aligned_cols=93 Identities=16% Similarity=0.156 Sum_probs=50.9
Q ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCC--CChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-----CCch
Q 028123 79 AWVDVSEEIATNVQRARTKMAELARAHAKALMPSFG--DGKEDQHAIESLTQEITNILKRSEKRLQQLSAA-----GPSE 151 (213)
Q Consensus 79 ~Wvd~~eei~~~l~~Ik~km~eL~kLh~K~L~p~Fd--D~~~ee~eIE~lT~eIt~lf~~~e~~Ik~i~~~-----~~~~ 151 (213)
+|....+||...+.+++.....-..+... ..+.. +-.....++...-..|.-.+...++.|..+... -+..
T Consensus 28 PF~~Vk~EVq~sl~~l~~l~~~w~~l~~~--~~~~s~~E~~~~~~EL~~~l~sie~dLeDLe~sI~ivE~np~kF~l~~~ 105 (130)
T 4dnd_A 28 PFFVVRGEVQKAVNTARGLYQRWCELLQE--SAAVGREELDWTTNELRNGLRSIEWDLEDLEETIGIVEANPGKFKLPAG 105 (130)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHC-----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHCCCHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHhhcc--CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHhcCCCHH
Confidence 38888898888777766655543322211 01111 001112344444444555555555555555442 2466
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH
Q 028123 152 DSNVRKNVQRSLATDLQNLSME 173 (213)
Q Consensus 152 E~~i~kNvq~sLA~kLQ~LS~~ 173 (213)
|..-|+.....+-.+|.++-..
T Consensus 106 Ei~~Rr~fV~~~r~~I~~mk~~ 127 (130)
T 4dnd_A 106 DLQERKVFVERMREAVQEMKDH 127 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 7888888888888888776544
No 14
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=39.31 E-value=54 Score=20.57 Aligned_cols=27 Identities=4% Similarity=0.266 Sum_probs=22.0
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 028123 80 WVDVSEEIATNVQRARTKMAELARAHA 106 (213)
Q Consensus 80 Wvd~~eei~~~l~~Ik~km~eL~kLh~ 106 (213)
.++..+.|+..|.+...+|.+|++-.+
T Consensus 7 l~qkI~kVdrEI~Kte~kI~~lqkKlk 33 (42)
T 2l5g_B 7 LIQNMDRVDREITMVEQQISKLKKKQQ 33 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577888999999999999988876544
No 15
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=37.52 E-value=1e+02 Score=28.56 Aligned_cols=19 Identities=5% Similarity=0.298 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 028123 85 EEIATNVQRARTKMAELAR 103 (213)
Q Consensus 85 eei~~~l~~Ik~km~eL~k 103 (213)
+.|+..|..++.++.+|+.
T Consensus 96 ~~V~~~LqeLe~~l~~lsn 114 (464)
T 1m1j_B 96 KTVKPVLRDLKDRVAKFSD 114 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hhhHhHHHHHHHHHHHHhh
Confidence 3455556666666666643
No 16
>2z2t_D Fusion inhibitor peptide SC34EK; coiled-coil, viral protein/inhibitor complex; 2.10A {Synthetic}
Probab=34.03 E-value=52 Score=19.47 Aligned_cols=20 Identities=30% Similarity=0.592 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 028123 120 QHAIESLTQEITNILKRSEK 139 (213)
Q Consensus 120 e~eIE~lT~eIt~lf~~~e~ 139 (213)
+++|+..|..|..++.+++.
T Consensus 6 ekei~n~t~~Iy~lle~sq~ 25 (36)
T 2z2t_D 6 DRKIEEYTKKIEELIKKSQE 25 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 57999999999999988764
No 17
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=32.09 E-value=75 Score=28.85 Aligned_cols=23 Identities=17% Similarity=0.333 Sum_probs=13.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Q 028123 152 DSNVRKNVQRSLATDLQNLSMEL 174 (213)
Q Consensus 152 E~~i~kNvq~sLA~kLQ~LS~~F 174 (213)
..++.+++.+.+..++|.|=..-
T Consensus 135 ~ir~Lq~~l~~q~~kiqRLE~~I 157 (390)
T 1deq_A 135 RINLLQKNVRDQLVDMKRLEVDI 157 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666666666664443
No 18
>3vh7_B CP32M; 6-helix bundle, membrane fusion inhibition, membrane protein inhibitor complex; 2.02A {Human immunodeficiency virus type 1} PDB: 3vgy_D
Probab=30.51 E-value=55 Score=19.02 Aligned_cols=19 Identities=37% Similarity=0.499 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 028123 120 QHAIESLTQEITNILKRSE 138 (213)
Q Consensus 120 e~eIE~lT~eIt~lf~~~e 138 (213)
+++|+..|..|..++.+++
T Consensus 14 ekei~n~t~~Iy~lle~sq 32 (34)
T 3vh7_B 14 EREIENYTKLIYKILEESQ 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHc
Confidence 6889999999999888765
No 19
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=30.03 E-value=1.5e+02 Score=21.24 Aligned_cols=85 Identities=16% Similarity=0.327 Sum_probs=54.3
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---cCCchhHHHH
Q 028123 80 WVDVSEEIATNVQRARTKMAELARAHAKALMPSFGDGKEDQHAIESLTQEITNILKRSEKRLQQLSA---AGPSEDSNVR 156 (213)
Q Consensus 80 Wvd~~eei~~~l~~Ik~km~eL~kLh~K~L~p~FdD~~~ee~eIE~lT~eIt~lf~~~e~~Ik~i~~---~~~~~E~~i~ 156 (213)
|-..-.+.......|..++..+..+ . + +++ ...-.+|...+.+|+..|..+.- ..++....-.
T Consensus 7 Fe~YE~df~~l~~~i~~kl~~i~~~------~--g----eer--k~~i~~ie~~l~EA~ell~qMelE~r~~p~~~R~~~ 72 (102)
T 1vcs_A 7 GEGYEQDFAVLTAEITSKIARVPRL------P--P----DEK--KQMVANVEKQLEEARELLEQMDLEVREIPPQSRGMY 72 (102)
T ss_dssp CCCSHHHHHHHHHHHHHHHHHGGGS------C--T----TTH--HHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcc------C--c----HHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHhHHHH
Confidence 3345567777788888888875321 1 1 121 23455777788888888888754 2355566666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 028123 157 KNVQRSLATDLQNLSMELRKKQ 178 (213)
Q Consensus 157 kNvq~sLA~kLQ~LS~~FRk~Q 178 (213)
.+=.+.|-.+|..|-.+|++.+
T Consensus 73 ~~klr~Yk~dL~~lk~elk~~~ 94 (102)
T 1vcs_A 73 SNRMRSYKQEMGKLETDFKRSR 94 (102)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 6667777788877777776643
No 20
>3vgx_D Envelope glycoprotein GP160; 6-helix bundle, membrane fusion, membrane protein; HET: GOL; 1.74A {Human immunodeficiency virus type 1}
Probab=29.50 E-value=60 Score=18.54 Aligned_cols=19 Identities=21% Similarity=0.403 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 028123 120 QHAIESLTQEITNILKRSE 138 (213)
Q Consensus 120 e~eIE~lT~eIt~lf~~~e 138 (213)
+++|+..|..|..++.+++
T Consensus 12 ~kei~n~t~~Iy~lle~sq 30 (32)
T 3vgx_D 12 DREINNYTSLIHSLIEESQ 30 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHc
Confidence 6789999999998888765
No 21
>2pww_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein struct initiative; 1.82A {Bacillus clausii} SCOP: d.129.11.1
Probab=28.54 E-value=80 Score=24.24 Aligned_cols=49 Identities=16% Similarity=0.375 Sum_probs=29.9
Q ss_pred CCCCCceeecccccCCCCCCCCCCCCCCCCCCCCCccccCCCchHHhHHHHHHHHHHHHHHHH
Q 028123 36 SCSGPVIELVNSSLLNPNRNYAPLSTEDPGNSSRGAVTVGLPPAWVDVSEEIATNVQRARTKM 98 (213)
Q Consensus 36 ~~~~~~ie~~~~~l~~~~~~~~~l~~~d~~~~~~~~~~~~lpP~Wvd~~eei~~~l~~Ik~km 98 (213)
++.+++|.+. +|+|. +.|-|...|+.+ + .+|+.||+..+.+ |..|+..+
T Consensus 67 ~~~~A~v~L~-~P~Lg--kH~YphGvdye~-~-------~~p~~~v~~~~~~---L~ele~~l 115 (127)
T 2pww_A 67 PRPSTIVQIM-TPILG--KYYYPHGVEYEG-E-------TFPQAVIDKCNNK---LALLAKTI 115 (127)
T ss_dssp TCTTCEEEEC-CCEEE--ECCTTTCCCSSC-C-------CCCHHHHHHHHHH---HHHHHHHH
T ss_pred CCCCeEEEeC-CeeEE--EeECCCCCCCcc-c-------cCCHHHHHHHHHH---HHHHHHHH
Confidence 5577888887 47776 344455544422 1 4899999876644 44444433
No 22
>2x7r_B Transmembrane protein GP41; envelope glycoprotein, membrane anchored fusion protein, viral protein; 2.00A {Human immunodeficiency virus type 1LW12}
Probab=26.65 E-value=69 Score=21.55 Aligned_cols=20 Identities=20% Similarity=0.396 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 028123 120 QHAIESLTQEITNILKRSEK 139 (213)
Q Consensus 120 e~eIE~lT~eIt~lf~~~e~ 139 (213)
|++|+..|..|..++.+++.
T Consensus 12 ekeI~nyt~~Iy~LLe~sq~ 31 (63)
T 2x7r_B 12 DREINNYTSLIHSLIEESQN 31 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHh
Confidence 68999999999999988874
No 23
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=26.27 E-value=2.3e+02 Score=26.90 Aligned_cols=83 Identities=8% Similarity=0.191 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH------hhhCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhcCCchhHHHHHH
Q 028123 86 EIATNVQRARTKMAELARAHA------KALMPSFGDGKEDQHAIESLTQEITNILKRSEKRLQQ-LSAAGPSEDSNVRKN 158 (213)
Q Consensus 86 ei~~~l~~Ik~km~eL~kLh~------K~L~p~FdD~~~ee~eIE~lT~eIt~lf~~~e~~Ik~-i~~~~~~~E~~i~kN 158 (213)
++...|.+|+.++++|++.++ +.++-..-.+-....+.+..-.+|+..+++-...|+. |...- .-.++.+|
T Consensus 61 DltkrINELKnqLEdlsKnsKdseqy~k~~~E~Lr~rq~q~~dNdNtynE~S~ELRRrIqyLKekVdnQl--snIrvLQs 138 (562)
T 3ghg_A 61 DFTNRINKLKNSLFEYQKNNKDSHSLTTNIMEILRGDFSSANNRDNTYNRVSEDLRSRIEVLKRKVIEKV--QHIQLLQK 138 (562)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH--HHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHH
Q ss_pred HHHHHHHHHHHH
Q 028123 159 VQRSLATDLQNL 170 (213)
Q Consensus 159 vq~sLA~kLQ~L 170 (213)
+...+..+||.|
T Consensus 139 nLedq~~kIQRL 150 (562)
T 3ghg_A 139 NVRAQLVDMKRL 150 (562)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
No 24
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*
Probab=26.25 E-value=1.8e+02 Score=26.95 Aligned_cols=28 Identities=21% Similarity=0.311 Sum_probs=18.8
Q ss_pred CCchHHhHHHHHHHHHHHHHHHHHHHHH
Q 028123 76 LPPAWVDVSEEIATNVQRARTKMAELAR 103 (213)
Q Consensus 76 lpP~Wvd~~eei~~~l~~Ik~km~eL~k 103 (213)
+=|.=..+.+-.......|+..|.+|+.
T Consensus 75 yCPTtCglad~L~kye~~V~~dl~~Le~ 102 (461)
T 3ghg_B 75 LCPTGCQLQEALLQQERPIRNSVDELNN 102 (461)
T ss_dssp CEECHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCcchHHHHHHhcccchhhHHHHHHH
Confidence 5666677777766666667776666654
No 25
>1mqs_B SED5P, integral membrane protein SED5; SM-protein, snare, syntaxin, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae}
Probab=26.20 E-value=9.8 Score=24.88 Aligned_cols=19 Identities=21% Similarity=0.270 Sum_probs=14.7
Q ss_pred CCccccchHHHHHHHHhcc
Q 028123 1 MATRNRTLIYKRYRDALKT 19 (213)
Q Consensus 1 MatRnrT~~F~~yR~~~~~ 19 (213)
|..||||.+|...=..+++
T Consensus 6 ~SiqDRT~EF~siv~~lqk 24 (50)
T 1mqs_B 6 MNIKDRTSEFQQSVLSYKK 24 (50)
T ss_dssp HHHHBCHHHHHHHHHHHHH
T ss_pred ccccccCHHHHHHHHHHHh
Confidence 3469999999987666665
No 26
>3f6n_A Virion-associated protein; coiled-coil, viral protein, tetramer, DNA-binding, D binding protein; 3.10A {Cauliflower mosaic virus}
Probab=23.87 E-value=1.2e+02 Score=23.35 Aligned_cols=54 Identities=6% Similarity=0.167 Sum_probs=28.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCC--hHHHHHHHHHHHHHHHHHHHHH
Q 028123 82 DVSEEIATNVQRARTKMAELARAHAKALMPSFGDG--KEDQHAIESLTQEITNILKRSE 138 (213)
Q Consensus 82 d~~eei~~~l~~Ik~km~eL~kLh~K~L~p~FdD~--~~ee~eIE~lT~eIt~lf~~~e 138 (213)
++..+|++.+..|+....++..+-++. .+ .+. ...|.--...-.+|+..+.+|+
T Consensus 6 ~i~~ei~e~~~~i~~l~~~Ik~il~~~-~s--t~~~~~~lEsiAAKIIkDisdkId~Ce 61 (129)
T 3f6n_A 6 QIQKEVSEILSDQKSMKADIKAILELL-GS--QNPIKESLETVAAKIVNDLTKLINDCP 61 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-HH--SCCHHHHHHHHHHHHHHHHHHHHHTCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc-CC--CcchhhhHHHHHHHHHHHHHHHHhcCc
Confidence 345556666666666666665555441 12 332 3333333445567777777765
No 27
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=22.54 E-value=1.1e+02 Score=18.62 Aligned_cols=21 Identities=19% Similarity=0.256 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 028123 83 VSEEIATNVQRARTKMAELAR 103 (213)
Q Consensus 83 ~~eei~~~l~~Ik~km~eL~k 103 (213)
.++|+.+.|.++..++..|..
T Consensus 9 TLeEtkeQi~~l~~kl~~Lke 29 (38)
T 2l5g_A 9 SLEETKEQILKLEEKLLALQE 29 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHH
Confidence 578888889888888888865
No 28
>3vie_B Sifuvirtide; 6-helix bundle, membrane fusion inhibition, HIV, viral prote antiviral protein complex; 1.80A {Human immunodeficiency virus 1}
Probab=22.39 E-value=1.1e+02 Score=18.08 Aligned_cols=20 Identities=35% Similarity=0.561 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 028123 120 QHAIESLTQEITNILKRSEK 139 (213)
Q Consensus 120 e~eIE~lT~eIt~lf~~~e~ 139 (213)
+++|+..|..|..++.+++.
T Consensus 7 ekei~n~t~~Iy~lle~sq~ 26 (37)
T 3vie_B 7 EREIENYTRQIYRILEESQE 26 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 67899999999999987764
No 29
>1ezj_A Nucleocapsid phosphoprotein; four stranded coiled coil, viral polymerase, T viral protein, transferase; 1.90A {Sendai virus} SCOP: h.1.14.1
Probab=20.85 E-value=1.3e+02 Score=22.32 Aligned_cols=31 Identities=3% Similarity=-0.016 Sum_probs=26.3
Q ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 028123 79 AWVDVSEEIATNVQRARTKMAELARAHAKAL 109 (213)
Q Consensus 79 ~Wvd~~eei~~~l~~Ik~km~eL~kLh~K~L 109 (213)
.-...+||=+..+.+|++.|..+..+|++..
T Consensus 63 ~~~~kv~en~~~L~QIQ~ei~s~rd~hkR~~ 93 (115)
T 1ezj_A 63 SSARKVDENKQLLKQIQESVESFRDIYKRFS 93 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456788899999999999999999999854
No 30
>3o3y_A Chimeric alpha+alpha/beta peptide based on the CH sequence of GP41; HIV fusion inhibitor, HIV GP41, mixed alpha-residue / beta-R backbone; HET: XPC B3E XCP; 1.35A {Synthetic} PDB: 3f4y_D 3g7a_B* 4dzu_B 4dzv_B* 3o42_B* 3o3z_B* 3f4z_A* 3f50_B* 3o43_B* 3o40_B*
Probab=20.66 E-value=1.2e+02 Score=18.23 Aligned_cols=20 Identities=15% Similarity=0.303 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 028123 120 QHAIESLTQEITNILKRSEK 139 (213)
Q Consensus 120 e~eIE~lT~eIt~lf~~~e~ 139 (213)
+++|+..|..|..++.+++.
T Consensus 8 ekeI~n~t~~Iy~lle~sq~ 27 (40)
T 3o3y_A 8 DXAIAXYAXRIEXLIXAAQX 27 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhHHHHHHHHHHHHHH
Confidence 67899999999999987764
No 31
>3gwo_A Envelope glycoprotein GP160; viral membrane fusion, HIV-1, envelope protein, neutra antibodies, AIDS, apoptosis; HET: JEF; 1.65A {Human immunodeficiency virus type 1 lwisolate} PDB: 3h01_A 3h00_A 1fav_C* 4g6f_P 2pv6_A 3mnw_P 3mnz_P
Probab=20.09 E-value=96 Score=20.11 Aligned_cols=20 Identities=20% Similarity=0.396 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 028123 120 QHAIESLTQEITNILKRSEK 139 (213)
Q Consensus 120 e~eIE~lT~eIt~lf~~~e~ 139 (213)
+++|+..|..|..++.+++.
T Consensus 3 ekeI~nyt~~Iy~lle~sq~ 22 (54)
T 3gwo_A 3 DREINNYTSLIHSLIEESQN 22 (54)
T ss_dssp CHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHh
Confidence 57899999999999988764
Done!