Query 028124
Match_columns 213
No_of_seqs 147 out of 1292
Neff 7.2
Searched_HMMs 46136
Date Fri Mar 29 06:37:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028124.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028124hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0328 Predicted ATP-dependen 100.0 1.1E-36 2.5E-41 259.6 13.3 164 17-213 235-400 (400)
2 KOG0330 ATP-dependent RNA heli 100.0 9.3E-33 2E-37 243.5 13.1 160 17-210 270-431 (476)
3 COG0513 SrmB Superfamily II DN 100.0 1.3E-30 2.9E-35 243.0 17.1 153 18-203 243-398 (513)
4 KOG0331 ATP-dependent RNA heli 100.0 5.3E-31 1.1E-35 242.2 13.9 162 17-209 308-471 (519)
5 KOG0326 ATP-dependent RNA heli 100.0 4.1E-31 8.8E-36 228.7 11.1 161 17-211 292-454 (459)
6 KOG0333 U5 snRNP-like RNA heli 100.0 1.3E-29 2.8E-34 230.2 15.4 146 20-199 490-637 (673)
7 KOG0340 ATP-dependent RNA heli 100.0 1.6E-29 3.4E-34 221.0 14.7 162 16-208 220-383 (442)
8 PRK04837 ATP-dependent RNA hel 100.0 4.5E-29 9.9E-34 227.1 16.1 161 18-212 226-388 (423)
9 KOG0332 ATP-dependent RNA heli 100.0 7.4E-29 1.6E-33 218.0 14.8 157 17-206 299-464 (477)
10 PRK11776 ATP-dependent RNA hel 100.0 1.4E-27 3.1E-32 219.5 18.5 155 19-207 214-370 (460)
11 PTZ00110 helicase; Provisional 100.0 1.6E-27 3.4E-32 223.9 17.4 163 17-211 345-509 (545)
12 KOG0327 Translation initiation 100.0 7.8E-28 1.7E-32 211.9 13.3 161 17-213 235-397 (397)
13 PRK11192 ATP-dependent RNA hel 100.0 6.2E-27 1.4E-31 213.5 18.7 155 17-204 214-370 (434)
14 PRK10590 ATP-dependent RNA hel 99.9 5.1E-27 1.1E-31 215.9 17.4 154 18-205 216-371 (456)
15 PRK04537 ATP-dependent RNA hel 99.9 5.9E-27 1.3E-31 221.1 17.4 157 18-208 228-386 (572)
16 PRK11634 ATP-dependent RNA hel 99.9 8.7E-27 1.9E-31 221.8 18.0 160 17-210 215-376 (629)
17 PRK01297 ATP-dependent RNA hel 99.9 3.1E-26 6.7E-31 211.5 19.1 151 19-203 307-459 (475)
18 PTZ00424 helicase 45; Provisio 99.9 2.2E-26 4.9E-31 207.0 17.7 163 18-213 237-401 (401)
19 PLN00206 DEAD-box ATP-dependen 99.9 4.6E-26 9.9E-31 212.8 17.6 161 19-210 337-499 (518)
20 KOG0342 ATP-dependent RNA heli 99.9 7.9E-26 1.7E-30 204.3 14.1 167 8-210 290-458 (543)
21 KOG0345 ATP-dependent RNA heli 99.9 6.9E-26 1.5E-30 203.9 13.2 170 3-205 207-383 (567)
22 KOG0336 ATP-dependent RNA heli 99.9 1.3E-25 2.7E-30 199.9 12.5 159 18-209 435-595 (629)
23 KOG0335 ATP-dependent RNA heli 99.9 3.9E-25 8.4E-30 201.1 14.6 163 16-207 297-465 (482)
24 KOG0343 RNA Helicase [RNA proc 99.9 4.4E-25 9.6E-30 201.9 14.0 161 15-209 281-445 (758)
25 KOG0346 RNA helicase [RNA proc 99.9 5.7E-25 1.2E-29 196.8 12.9 173 15-199 235-423 (569)
26 KOG0338 ATP-dependent RNA heli 99.9 2.1E-24 4.6E-29 196.0 10.6 159 6-197 380-544 (691)
27 TIGR00614 recQ_fam ATP-depende 99.9 2.9E-23 6.2E-28 191.8 16.9 129 35-195 212-342 (470)
28 PLN03137 ATP-dependent DNA hel 99.9 4.8E-23 1E-27 202.9 16.5 145 17-195 650-796 (1195)
29 KOG0344 ATP-dependent RNA heli 99.9 2.4E-23 5.2E-28 191.4 13.3 157 18-206 357-515 (593)
30 PRK11057 ATP-dependent DNA hel 99.9 1E-22 2.2E-27 193.5 17.1 127 35-194 223-351 (607)
31 TIGR03817 DECH_helic helicase/ 99.9 7.3E-23 1.6E-27 198.2 15.5 140 35-209 260-411 (742)
32 KOG0339 ATP-dependent RNA heli 99.9 4.8E-23 1.1E-27 187.1 12.9 163 18-212 437-601 (731)
33 KOG0348 ATP-dependent RNA heli 99.9 9.8E-23 2.1E-27 186.0 14.5 157 15-200 389-568 (708)
34 KOG0341 DEAD-box protein abstr 99.9 7.7E-24 1.7E-28 187.5 6.8 143 21-198 396-541 (610)
35 KOG0350 DEAD-box ATP-dependent 99.9 6.8E-23 1.5E-27 185.7 12.4 152 16-200 398-554 (620)
36 TIGR01389 recQ ATP-dependent D 99.9 1.4E-21 3.1E-26 185.0 17.0 128 34-194 210-339 (591)
37 KOG0334 RNA helicase [RNA proc 99.9 1.9E-21 4E-26 188.1 13.8 156 20-207 584-741 (997)
38 KOG4284 DEAD box protein [Tran 99.9 1.7E-21 3.7E-26 181.0 12.4 145 20-197 237-391 (980)
39 KOG0347 RNA helicase [RNA proc 99.9 6.2E-22 1.3E-26 181.2 9.0 150 17-201 434-585 (731)
40 PRK04914 ATP-dependent helicas 99.9 7.1E-21 1.5E-25 187.3 16.4 121 33-184 478-601 (956)
41 COG0514 RecQ Superfamily II DN 99.9 5.6E-21 1.2E-25 178.8 13.9 150 14-197 197-348 (590)
42 COG1111 MPH1 ERCC4-like helica 99.8 6.2E-20 1.3E-24 167.0 15.3 128 30-186 344-481 (542)
43 TIGR00580 mfd transcription-re 99.8 4.6E-20 9.9E-25 181.7 13.3 169 4-207 619-801 (926)
44 PRK05298 excinuclease ABC subu 99.8 2.8E-19 6.1E-24 171.2 16.4 145 34-209 430-589 (652)
45 PRK12898 secA preprotein trans 99.8 1.3E-19 2.9E-24 172.0 13.6 134 21-188 445-588 (656)
46 PRK13767 ATP-dependent helicas 99.8 3E-19 6.5E-24 175.9 15.5 97 52-175 283-384 (876)
47 TIGR00631 uvrb excinuclease AB 99.8 7.5E-19 1.6E-23 168.1 16.3 134 33-197 425-564 (655)
48 PRK13766 Hef nuclease; Provisi 99.8 1.8E-18 3.8E-23 168.3 15.8 127 31-186 344-479 (773)
49 KOG0337 ATP-dependent RNA heli 99.8 1.7E-19 3.7E-24 161.1 7.3 155 16-203 229-385 (529)
50 PRK10689 transcription-repair 99.8 7.4E-19 1.6E-23 176.4 12.7 170 3-207 767-950 (1147)
51 PRK09200 preprotein translocas 99.8 1.6E-18 3.4E-23 167.6 14.5 127 28-188 407-543 (790)
52 TIGR01970 DEAH_box_HrpB ATP-de 99.8 1.9E-18 4E-23 168.7 14.6 139 20-188 178-338 (819)
53 cd00079 HELICc Helicase superf 99.8 6.6E-18 1.4E-22 127.8 14.4 127 22-181 2-130 (131)
54 PHA02653 RNA helicase NPH-II; 99.8 3.5E-18 7.6E-23 163.6 15.9 146 18-195 354-523 (675)
55 PRK09751 putative ATP-dependen 99.8 2.8E-18 6E-23 174.3 15.4 129 52-207 243-408 (1490)
56 KOG0349 Putative DEAD-box RNA 99.8 1.5E-18 3.3E-23 155.8 11.8 132 51-209 503-670 (725)
57 PRK10917 ATP-dependent DNA hel 99.8 4.8E-18 1E-22 163.5 14.5 130 52-208 470-616 (681)
58 PRK11664 ATP-dependent RNA hel 99.8 6.8E-18 1.5E-22 164.8 12.8 138 21-188 182-341 (812)
59 TIGR00643 recG ATP-dependent D 99.7 1.9E-17 4.1E-22 158.2 15.0 105 52-183 447-563 (630)
60 TIGR01587 cas3_core CRISPR-ass 99.7 5.4E-17 1.2E-21 144.3 15.8 117 34-184 207-334 (358)
61 TIGR03714 secA2 accessory Sec 99.7 3.7E-17 8E-22 157.3 14.6 127 27-188 402-539 (762)
62 TIGR02621 cas3_GSU0051 CRISPR- 99.7 6.4E-17 1.4E-21 157.0 14.8 140 20-185 243-390 (844)
63 PF00271 Helicase_C: Helicase 99.7 2.5E-17 5.5E-22 115.7 7.8 75 72-174 2-76 (78)
64 KOG0351 ATP-dependent DNA heli 99.7 1.7E-16 3.7E-21 155.8 14.9 157 6-196 444-602 (941)
65 PRK02362 ski2-like helicase; P 99.7 1.7E-16 3.6E-21 154.1 14.1 108 52-186 242-397 (737)
66 TIGR00963 secA preprotein tran 99.7 7.6E-16 1.7E-20 147.7 16.8 127 31-190 386-521 (745)
67 KOG0354 DEAD-box like helicase 99.7 3.8E-16 8.3E-21 148.7 14.4 132 30-189 391-532 (746)
68 TIGR03158 cas3_cyano CRISPR-as 99.7 8.7E-16 1.9E-20 137.6 12.6 116 20-173 239-357 (357)
69 PHA02558 uvsW UvsW helicase; P 99.7 1.1E-15 2.3E-20 142.6 13.6 120 34-184 328-453 (501)
70 PRK12906 secA preprotein trans 99.7 1.4E-15 3E-20 146.9 14.6 124 32-188 422-555 (796)
71 TIGR00603 rad25 DNA repair hel 99.7 1.9E-15 4E-20 145.3 15.2 120 34-188 480-609 (732)
72 PRK11131 ATP-dependent RNA hel 99.6 2.2E-15 4.7E-20 151.5 14.1 137 21-188 251-413 (1294)
73 PRK09401 reverse gyrase; Revie 99.6 1E-15 2.3E-20 154.1 11.5 114 18-173 302-429 (1176)
74 PRK00254 ski2-like helicase; P 99.6 4.5E-15 9.8E-20 143.8 13.4 108 52-187 237-389 (720)
75 COG1201 Lhr Lhr-like helicases 99.6 8.5E-15 1.8E-19 141.8 13.6 94 53-173 253-346 (814)
76 PRK12900 secA preprotein trans 99.6 9.6E-15 2.1E-19 142.7 13.7 127 30-189 578-714 (1025)
77 TIGR01967 DEAH_box_HrpA ATP-de 99.6 1E-14 2.2E-19 146.9 13.7 138 21-189 244-407 (1283)
78 smart00490 HELICc helicase sup 99.6 7.9E-15 1.7E-19 102.1 8.7 79 68-174 2-80 (82)
79 KOG0329 ATP-dependent RNA heli 99.5 1.6E-15 3.4E-20 128.9 2.6 123 17-208 253-378 (387)
80 PRK14701 reverse gyrase; Provi 99.5 1.9E-14 4.1E-19 148.4 10.4 112 17-169 302-424 (1638)
81 PRK01172 ski2-like helicase; P 99.5 9.2E-14 2E-18 133.7 13.9 107 52-186 235-378 (674)
82 COG1202 Superfamily II helicas 99.5 2.5E-14 5.5E-19 132.4 9.2 140 18-186 402-553 (830)
83 PLN03142 Probable chromatin-re 99.5 2.3E-13 5E-18 135.2 15.8 138 34-199 471-614 (1033)
84 TIGR01054 rgy reverse gyrase. 99.5 3E-13 6.5E-18 136.6 13.2 103 18-161 300-410 (1171)
85 KOG0352 ATP-dependent DNA heli 99.5 9.5E-14 2.1E-18 125.0 8.3 161 6-194 200-370 (641)
86 PRK09694 helicase Cas3; Provis 99.4 1.7E-12 3.8E-17 127.6 13.8 107 36-173 547-660 (878)
87 COG1200 RecG RecG-like helicas 99.4 8.2E-12 1.8E-16 118.0 15.0 165 11-209 438-619 (677)
88 COG1197 Mfd Transcription-repa 99.3 1.2E-11 2.7E-16 122.3 14.1 150 1-185 759-912 (1139)
89 COG1061 SSL2 DNA or RNA helica 99.3 3.5E-11 7.7E-16 110.8 14.6 106 34-172 268-373 (442)
90 KOG0353 ATP-dependent DNA heli 99.3 1.2E-11 2.7E-16 110.3 10.1 120 16-167 283-403 (695)
91 COG0556 UvrB Helicase subunit 99.3 6E-11 1.3E-15 109.5 13.9 106 52-185 445-556 (663)
92 COG4098 comFA Superfamily II D 99.2 8.5E-10 1.8E-14 97.4 14.8 114 50-192 302-422 (441)
93 PRK11448 hsdR type I restricti 99.1 2.8E-10 6.1E-15 114.7 12.1 92 53-172 698-797 (1123)
94 TIGR00595 priA primosomal prot 99.1 5.4E-10 1.2E-14 104.6 12.1 90 66-182 271-377 (505)
95 PRK12904 preprotein translocas 99.1 1.8E-09 3.8E-14 105.4 15.6 125 31-188 411-575 (830)
96 COG1205 Distinct helicase fami 99.1 7.7E-10 1.7E-14 109.0 12.2 160 18-208 266-449 (851)
97 PRK05580 primosome assembly pr 99.1 1.2E-09 2.6E-14 105.6 12.9 93 65-184 438-547 (679)
98 PRK13104 secA preprotein trans 99.1 2.4E-09 5.1E-14 104.9 14.7 124 32-188 426-589 (896)
99 KOG4150 Predicted ATP-dependen 99.0 1.6E-09 3.5E-14 100.9 11.0 147 35-211 510-667 (1034)
100 PRK13107 preprotein translocas 99.0 9.8E-09 2.1E-13 100.5 15.6 124 32-188 431-593 (908)
101 KOG0391 SNF2 family DNA-depend 98.8 1.2E-07 2.5E-12 94.1 13.9 121 35-186 1261-1387(1958)
102 COG1204 Superfamily II helicas 98.8 1E-07 2.3E-12 93.1 13.0 107 51-184 251-406 (766)
103 KOG0385 Chromatin remodeling c 98.7 3E-07 6.4E-12 88.3 13.1 142 29-199 467-614 (971)
104 KOG0384 Chromodomain-helicase 98.7 1.5E-07 3.2E-12 93.8 11.0 138 35-200 684-827 (1373)
105 KOG0950 DNA polymerase theta/e 98.6 1.5E-07 3.3E-12 91.9 10.2 115 53-195 460-620 (1008)
106 COG1643 HrpA HrpA-like helicas 98.6 2.5E-07 5.5E-12 90.8 11.6 145 15-188 222-389 (845)
107 KOG0390 DNA repair protein, SN 98.6 7.7E-07 1.7E-11 86.3 14.1 126 34-186 578-707 (776)
108 COG1203 CRISPR-associated heli 98.6 2.4E-07 5.1E-12 90.5 10.4 107 51-184 438-548 (733)
109 KOG1000 Chromatin remodeling p 98.5 2E-06 4.2E-11 79.5 13.1 136 35-199 473-618 (689)
110 KOG0389 SNF2 family DNA-depend 98.5 3E-06 6.5E-11 81.7 14.6 123 34-187 761-889 (941)
111 KOG0953 Mitochondrial RNA heli 98.5 2E-06 4.3E-11 80.3 11.8 122 51-204 356-491 (700)
112 KOG1002 Nucleotide excision re 98.4 2.7E-06 6E-11 78.6 11.8 124 33-186 619-749 (791)
113 KOG0922 DEAH-box RNA helicase 98.4 1.9E-06 4.2E-11 81.7 10.7 146 14-188 221-392 (674)
114 KOG0387 Transcription-coupled 98.4 5.3E-06 1.2E-10 80.0 13.6 123 35-186 531-658 (923)
115 COG0553 HepA Superfamily II DN 98.4 7.1E-06 1.5E-10 80.3 15.0 125 34-187 692-823 (866)
116 KOG0947 Cytoplasmic exosomal R 98.4 2.4E-06 5.1E-11 83.8 11.3 119 38-186 554-723 (1248)
117 KOG0392 SNF2 family DNA-depend 98.4 9.1E-06 2E-10 81.4 14.2 128 33-186 1309-1454(1549)
118 KOG0951 RNA helicase BRR2, DEA 98.3 8.2E-06 1.8E-10 82.0 13.1 147 18-193 509-709 (1674)
119 KOG0388 SNF2 family DNA-depend 98.3 8E-06 1.7E-10 78.3 10.8 123 34-186 1028-1154(1185)
120 KOG0920 ATP-dependent RNA heli 98.2 3.9E-06 8.5E-11 82.8 7.9 125 34-186 395-544 (924)
121 KOG0923 mRNA splicing factor A 98.2 9.2E-06 2E-10 77.3 8.8 147 10-185 432-605 (902)
122 KOG0948 Nuclear exosomal RNA h 98.1 7.3E-06 1.6E-10 78.9 7.5 109 51-186 381-539 (1041)
123 PRK12903 secA preprotein trans 98.1 5.7E-05 1.2E-09 74.3 13.6 128 27-188 404-541 (925)
124 TIGR01407 dinG_rel DnaQ family 98.0 2.4E-05 5.1E-10 77.8 9.6 91 37-159 660-755 (850)
125 KOG0952 DNA/RNA helicase MER3/ 98.0 5.5E-05 1.2E-09 75.1 10.6 113 52-191 348-496 (1230)
126 KOG1123 RNA polymerase II tran 97.9 0.00011 2.3E-09 68.5 11.5 131 23-189 517-656 (776)
127 COG4096 HsdR Type I site-speci 97.9 6.9E-05 1.5E-09 73.0 9.4 93 52-171 425-521 (875)
128 KOG0924 mRNA splicing factor A 97.9 3.7E-05 8E-10 73.6 7.1 142 15-185 527-696 (1042)
129 TIGR00596 rad1 DNA repair prot 97.8 0.00011 2.3E-09 72.6 10.2 45 31-75 267-317 (814)
130 PF06862 DUF1253: Protein of u 97.8 0.0011 2.3E-08 61.3 15.8 151 18-195 259-424 (442)
131 TIGR00348 hsdR type I site-spe 97.8 0.00031 6.7E-09 68.2 12.8 106 53-185 514-650 (667)
132 PRK12326 preprotein translocas 97.8 0.0005 1.1E-08 66.8 13.3 123 33-188 410-549 (764)
133 COG1110 Reverse gyrase [DNA re 97.7 0.00018 3.9E-09 71.5 9.9 105 17-160 309-417 (1187)
134 KOG0386 Chromatin remodeling c 97.6 0.00047 1E-08 68.4 10.7 123 35-185 711-837 (1157)
135 PRK12899 secA preprotein trans 97.6 0.0015 3.2E-08 65.1 14.1 125 31-188 549-683 (970)
136 PF13307 Helicase_C_2: Helicas 97.5 0.00044 9.6E-09 55.5 7.0 78 52-160 8-92 (167)
137 PRK12901 secA preprotein trans 97.4 0.0017 3.6E-08 65.2 11.6 123 33-188 611-743 (1112)
138 COG4581 Superfamily II RNA hel 97.4 0.0011 2.3E-08 66.7 9.6 108 51-186 377-537 (1041)
139 PRK08074 bifunctional ATP-depe 97.2 0.0059 1.3E-07 61.5 13.7 94 37-160 738-835 (928)
140 PRK13103 secA preprotein trans 97.2 0.0034 7.3E-08 62.4 11.4 123 33-188 432-593 (913)
141 PRK07246 bifunctional ATP-depe 97.2 0.016 3.5E-07 57.7 15.7 90 36-159 633-724 (820)
142 KOG0926 DEAH-box RNA helicase 97.1 0.0022 4.8E-08 62.7 8.5 56 126-185 629-703 (1172)
143 KOG4439 RNA polymerase II tran 97.0 0.0084 1.8E-07 58.0 11.5 131 29-186 724-858 (901)
144 COG4889 Predicted helicase [Ge 97.0 0.00071 1.5E-08 66.7 4.1 108 53-184 460-586 (1518)
145 COG1199 DinG Rad3-related DNA 97.0 0.016 3.5E-07 55.9 13.5 80 52-160 478-559 (654)
146 KOG1015 Transcription regulato 97.0 0.0052 1.1E-07 61.2 9.7 128 33-186 1125-1277(1567)
147 COG1198 PriA Primosomal protei 96.9 0.005 1.1E-07 60.2 9.5 92 65-183 492-600 (730)
148 CHL00122 secA preprotein trans 96.7 0.013 2.8E-07 58.1 10.4 87 30-148 404-491 (870)
149 KOG0949 Predicted helicase, DE 96.6 0.0045 9.8E-08 61.7 6.7 77 81-185 965-1047(1330)
150 PRK12902 secA preprotein trans 96.5 0.02 4.4E-07 57.0 10.1 86 31-148 420-506 (939)
151 TIGR03117 cas_csf4 CRISPR-asso 96.3 0.084 1.8E-06 51.2 13.0 83 52-160 469-561 (636)
152 PRK05580 primosome assembly pr 96.3 0.059 1.3E-06 52.6 12.0 102 25-158 165-267 (679)
153 KOG0925 mRNA splicing factor A 96.2 0.045 9.7E-07 51.3 10.0 137 21-186 223-387 (699)
154 PRK14873 primosome assembly pr 96.2 0.051 1.1E-06 53.0 10.9 95 34-159 172-267 (665)
155 PRK10917 ATP-dependent DNA hel 96.1 0.031 6.8E-07 54.5 9.1 103 25-158 285-392 (681)
156 TIGR00595 priA primosomal prot 96.0 0.052 1.1E-06 51.2 9.9 92 35-157 10-101 (505)
157 PRK11747 dinG ATP-dependent DN 96.0 0.06 1.3E-06 52.7 10.5 95 36-160 520-616 (697)
158 PF13871 Helicase_C_4: Helicas 95.5 0.099 2.1E-06 45.7 9.0 67 128-198 62-142 (278)
159 COG1198 PriA Primosomal protei 95.4 0.094 2E-06 51.5 9.2 103 23-157 218-321 (730)
160 TIGR00643 recG ATP-dependent D 95.3 0.075 1.6E-06 51.4 8.4 103 25-158 259-366 (630)
161 TIGR00604 rad3 DNA repair heli 95.3 0.19 4.2E-06 49.1 11.2 98 36-160 507-615 (705)
162 KOG0701 dsRNA-specific nucleas 95.0 0.012 2.7E-07 61.6 1.9 92 54-172 293-395 (1606)
163 COG1110 Reverse gyrase [DNA re 94.4 0.19 4.1E-06 50.8 8.4 62 51-136 123-190 (1187)
164 TIGR00580 mfd transcription-re 94.3 0.41 8.9E-06 48.5 10.7 103 25-158 475-582 (926)
165 TIGR02562 cas3_yersinia CRISPR 94.0 0.17 3.6E-06 51.5 7.2 107 57-173 760-877 (1110)
166 COG0513 SrmB Superfamily II DN 93.9 0.38 8.3E-06 45.4 9.1 93 36-155 81-180 (513)
167 smart00492 HELICc3 helicase su 93.5 0.37 8.1E-06 37.7 7.1 47 88-160 31-79 (141)
168 PRK10689 transcription-repair 93.3 0.28 6.1E-06 50.7 7.6 103 25-156 624-729 (1147)
169 KOG1016 Predicted DNA helicase 93.2 0.53 1.2E-05 46.7 8.9 122 52-197 718-862 (1387)
170 PF02399 Herpes_ori_bp: Origin 92.9 0.98 2.1E-05 44.9 10.3 100 35-172 268-373 (824)
171 COG1200 RecG RecG-like helicas 91.6 1 2.2E-05 43.8 8.7 80 51-157 309-392 (677)
172 cd00268 DEADc DEAD-box helicas 91.3 2.9 6.4E-05 33.5 10.1 110 23-159 37-153 (203)
173 PF10593 Z1: Z1 domain; Inter 91.0 1.2 2.7E-05 37.9 7.8 55 127-186 135-193 (239)
174 PRK11776 ATP-dependent RNA hel 90.9 1 2.2E-05 41.6 7.7 106 25-158 44-156 (460)
175 PRK14701 reverse gyrase; Provi 90.8 1.8 4E-05 46.4 10.3 63 52-137 121-188 (1638)
176 KOG2340 Uncharacterized conser 90.3 1.7 3.8E-05 41.4 8.6 139 33-202 533-681 (698)
177 PRK11634 ATP-dependent RNA hel 89.9 1.7 3.7E-05 42.2 8.6 104 25-156 46-156 (629)
178 KOG0347 RNA helicase [RNA proc 89.1 0.86 1.9E-05 43.6 5.7 44 56-99 266-312 (731)
179 TIGR01054 rgy reverse gyrase. 89.1 2.9 6.3E-05 43.5 10.0 85 26-136 97-187 (1171)
180 COG1197 Mfd Transcription-repa 89.0 2.5 5.4E-05 43.5 9.2 78 51-155 641-722 (1139)
181 COG0653 SecA Preprotein transl 88.9 0.98 2.1E-05 45.0 6.2 109 5-148 386-494 (822)
182 TIGR00614 recQ_fam ATP-depende 88.7 2.8 6.1E-05 38.9 8.9 60 53-136 51-110 (470)
183 PRK11192 ATP-dependent RNA hel 87.5 13 0.00029 33.8 12.4 106 25-157 41-155 (434)
184 KOG0339 ATP-dependent RNA heli 86.8 1.9 4.2E-05 41.0 6.4 76 53-155 296-376 (731)
185 cd01524 RHOD_Pyr_redox Member 86.4 2.7 5.9E-05 29.4 5.8 38 51-89 49-86 (90)
186 TIGR01389 recQ ATP-dependent D 86.2 5 0.00011 38.4 9.2 80 53-156 53-134 (591)
187 smart00491 HELICc2 helicase su 86.1 2.5 5.4E-05 33.0 6.0 47 92-160 32-80 (142)
188 KOG0951 RNA helicase BRR2, DEA 85.8 7.9 0.00017 40.6 10.5 114 51-194 1357-1502(1674)
189 cd00158 RHOD Rhodanese Homolog 85.8 1.7 3.7E-05 29.7 4.4 39 51-89 48-86 (89)
190 KOG1513 Nuclear helicase MOP-3 85.1 1.5 3.3E-05 43.7 5.0 44 128-175 858-909 (1300)
191 PRK04537 ATP-dependent RNA hel 85.0 2.3 4.9E-05 40.8 6.2 78 53-157 84-167 (572)
192 KOG0330 ATP-dependent RNA heli 84.9 4.4 9.6E-05 37.3 7.6 106 36-169 113-232 (476)
193 KOG1001 Helicase-like transcri 84.1 0.23 5.1E-06 48.5 -0.9 111 32-171 520-631 (674)
194 cd01449 TST_Repeat_2 Thiosulfa 84.0 3.1 6.7E-05 30.5 5.4 50 37-88 64-113 (118)
195 cd01444 GlpE_ST GlpE sulfurtra 83.7 4.2 9.1E-05 28.5 5.8 38 51-88 54-91 (96)
196 cd01529 4RHOD_Repeats Member o 83.4 2.7 5.8E-05 29.8 4.7 39 51-89 54-92 (96)
197 smart00450 RHOD Rhodanese Homo 83.4 2.2 4.8E-05 29.4 4.2 39 51-89 54-92 (100)
198 PRK04837 ATP-dependent RNA hel 82.4 5.3 0.00012 36.4 7.3 78 53-157 83-165 (423)
199 cd01523 RHOD_Lact_B Member of 82.0 2.1 4.6E-05 30.5 3.7 37 52-89 60-96 (100)
200 PTZ00110 helicase; Provisional 81.6 8.3 0.00018 36.7 8.5 78 53-157 203-285 (545)
201 PRK10590 ATP-dependent RNA hel 81.3 6 0.00013 36.6 7.3 77 54-157 76-157 (456)
202 cd01519 RHOD_HSP67B2 Member of 80.9 3.2 6.9E-05 29.7 4.3 38 52-89 65-102 (106)
203 cd01527 RHOD_YgaP Member of th 80.3 3.2 7E-05 29.5 4.2 38 51-88 52-89 (99)
204 PRK09401 reverse gyrase; Revie 80.1 8.2 0.00018 40.3 8.4 106 25-156 98-208 (1176)
205 cd01532 4RHOD_Repeat_1 Member 80.0 3.2 7E-05 29.3 4.0 38 52-89 49-88 (92)
206 cd01528 RHOD_2 Member of the R 79.6 3.4 7.4E-05 29.6 4.1 38 52-89 57-94 (101)
207 PRK11057 ATP-dependent DNA hel 79.3 13 0.00029 35.8 9.2 51 53-104 65-115 (607)
208 cd01533 4RHOD_Repeat_2 Member 78.5 6.5 0.00014 28.5 5.4 38 52-89 65-103 (109)
209 TIGR03817 DECH_helic helicase/ 78.4 11 0.00024 37.3 8.5 102 25-159 54-167 (742)
210 cd01448 TST_Repeat_1 Thiosulfa 78.2 5.6 0.00012 29.4 5.0 39 51-89 77-116 (122)
211 cd01520 RHOD_YbbB Member of th 77.9 5.8 0.00013 29.9 5.1 38 51-89 84-122 (128)
212 PRK01297 ATP-dependent RNA hel 77.9 19 0.0004 33.4 9.5 79 53-157 162-245 (475)
213 PLN03137 ATP-dependent DNA hel 77.9 15 0.00032 38.4 9.2 62 53-136 500-561 (1195)
214 PRK13766 Hef nuclease; Provisi 77.6 77 0.0017 31.3 15.0 106 25-160 32-142 (773)
215 cd01518 RHOD_YceA Member of th 77.3 3.5 7.6E-05 29.5 3.6 39 51-89 59-97 (101)
216 KOG0331 ATP-dependent RNA heli 76.9 7.3 0.00016 37.0 6.4 95 51-172 163-270 (519)
217 cd01535 4RHOD_Repeat_4 Member 76.7 9.3 0.0002 29.8 6.1 37 52-88 48-84 (145)
218 KOG0338 ATP-dependent RNA heli 75.9 15 0.00031 35.3 7.9 88 51-165 250-343 (691)
219 cd01525 RHOD_Kc Member of the 75.1 4.3 9.3E-05 29.0 3.6 37 53-89 65-101 (105)
220 cd01445 TST_Repeats Thiosulfat 74.9 8.6 0.00019 29.7 5.4 50 38-89 82-134 (138)
221 KOG0921 Dosage compensation co 74.8 4.3 9.4E-05 41.1 4.4 123 35-185 626-773 (1282)
222 cd01534 4RHOD_Repeat_3 Member 74.6 5 0.00011 28.4 3.8 37 52-89 55-91 (95)
223 PRK05728 DNA polymerase III su 74.5 10 0.00022 29.6 5.7 52 31-86 10-61 (142)
224 cd01526 RHOD_ThiF Member of th 74.3 4.2 9.1E-05 30.4 3.4 39 51-89 70-109 (122)
225 cd01521 RHOD_PspE2 Member of t 72.8 6.6 0.00014 28.6 4.1 38 51-89 62-101 (110)
226 cd01447 Polysulfide_ST Polysul 72.5 3.9 8.5E-05 29.0 2.8 39 51-89 59-97 (103)
227 cd01522 RHOD_1 Member of the R 71.3 7.1 0.00015 29.0 4.1 38 52-89 63-100 (117)
228 cd00032 CASc Caspase, interleu 69.2 68 0.0015 27.0 11.3 89 51-170 7-108 (243)
229 TIGR00696 wecB_tagA_cpsF bacte 69.0 61 0.0013 26.3 9.4 64 37-103 35-99 (177)
230 PRK14873 primosome assembly pr 68.3 42 0.0009 33.0 9.6 54 127-185 471-538 (665)
231 PF12683 DUF3798: Protein of u 68.0 9.2 0.0002 33.3 4.5 98 51-184 60-170 (275)
232 cd01530 Cdc25 Cdc25 phosphatas 67.8 7.9 0.00017 29.1 3.7 39 51-89 66-117 (121)
233 TIGR03865 PQQ_CXXCW PQQ-depend 66.1 20 0.00043 28.5 5.8 39 51-89 114-153 (162)
234 PRK10287 thiosulfate:cyanide s 65.6 23 0.0005 26.0 5.7 36 52-88 59-94 (104)
235 PRK12898 secA preprotein trans 65.5 29 0.00062 34.1 7.8 44 51-95 142-189 (656)
236 KOG0385 Chromatin remodeling c 65.2 42 0.00092 33.7 8.8 51 51-103 215-265 (971)
237 PF04364 DNA_pol3_chi: DNA pol 65.1 17 0.00037 28.1 5.2 38 36-76 15-52 (137)
238 PF11496 HDA2-3: Class II hist 64.9 84 0.0018 27.7 10.0 143 33-188 95-247 (297)
239 PLN02160 thiosulfate sulfurtra 64.6 12 0.00025 28.9 4.1 38 52-89 80-117 (136)
240 PF00270 DEAD: DEAD/DEAH box h 64.5 60 0.0013 24.6 10.9 106 23-157 15-127 (169)
241 cd00046 DEXDc DEAD-like helica 64.3 49 0.0011 23.5 9.4 59 35-94 13-73 (144)
242 PRK00162 glpE thiosulfate sulf 64.1 22 0.00049 25.5 5.4 38 52-89 57-94 (108)
243 PLN00206 DEAD-box ATP-dependen 63.4 27 0.00058 33.0 7.1 79 52-157 195-278 (518)
244 PF00581 Rhodanese: Rhodanese- 62.8 21 0.00046 25.2 5.1 40 50-89 64-108 (113)
245 KOG0389 SNF2 family DNA-depend 62.5 55 0.0012 33.0 9.0 92 52-170 447-549 (941)
246 cd06533 Glyco_transf_WecG_TagA 62.3 79 0.0017 25.2 9.1 64 37-103 33-98 (171)
247 COG0514 RecQ Superfamily II DN 62.0 26 0.00057 33.9 6.8 51 53-104 57-107 (590)
248 PRK09751 putative ATP-dependen 60.8 24 0.00053 37.8 6.8 80 53-159 37-134 (1490)
249 PRK11493 sseA 3-mercaptopyruva 59.8 23 0.0005 30.5 5.6 38 51-88 229-266 (281)
250 PRK05320 rhodanese superfamily 59.5 21 0.00044 30.8 5.1 39 52-90 174-212 (257)
251 PRK06646 DNA polymerase III su 57.9 47 0.001 26.4 6.6 52 31-86 10-61 (154)
252 TIGR02981 phageshock_pspE phag 57.7 40 0.00088 24.5 5.8 36 52-88 57-92 (101)
253 PF03808 Glyco_tran_WecB: Glyc 57.5 96 0.0021 24.7 9.0 65 36-103 34-100 (172)
254 KOG0329 ATP-dependent RNA heli 57.1 19 0.00042 31.6 4.5 75 54-155 111-191 (387)
255 PF04273 DUF442: Putative phos 56.7 52 0.0011 24.5 6.3 50 20-72 56-105 (110)
256 PRK13767 ATP-dependent helicas 55.8 32 0.0007 34.8 6.5 108 24-158 49-181 (876)
257 KOG0346 RNA helicase [RNA proc 55.5 15 0.00033 34.5 3.8 64 50-140 90-158 (569)
258 COG1205 Distinct helicase fami 55.0 65 0.0014 32.7 8.5 121 23-172 86-225 (851)
259 COG1111 MPH1 ERCC4-like helica 53.9 1.2E+02 0.0025 29.1 9.3 119 53-203 58-191 (542)
260 PRK01415 hypothetical protein; 53.6 19 0.00041 31.0 3.9 40 51-90 169-208 (247)
261 cd01080 NAD_bind_m-THF_DH_Cycl 53.0 1.2E+02 0.0025 24.3 8.8 92 36-163 28-122 (168)
262 PRK13104 secA preprotein trans 52.2 57 0.0012 33.3 7.4 45 52-97 122-170 (896)
263 KOG0350 DEAD-box ATP-dependent 51.4 53 0.0011 31.5 6.6 85 51-157 213-303 (620)
264 PLN02723 3-mercaptopyruvate su 51.4 36 0.00077 30.1 5.5 38 51-88 267-304 (320)
265 TIGR00963 secA preprotein tran 50.7 67 0.0015 32.1 7.6 45 52-97 96-144 (745)
266 KOG0345 ATP-dependent RNA heli 50.1 81 0.0018 30.0 7.6 95 35-155 57-163 (567)
267 TIGR00631 uvrb excinuclease AB 49.9 1.3E+02 0.0029 29.5 9.5 107 29-169 37-173 (655)
268 PRK05298 excinuclease ABC subu 49.6 1.6E+02 0.0035 28.7 10.1 105 32-169 42-176 (652)
269 KOG0383 Predicted helicase [Ge 48.8 19 0.0004 35.6 3.4 77 35-136 616-692 (696)
270 PF01751 Toprim: Toprim domain 48.4 27 0.00058 25.1 3.5 32 56-88 1-32 (100)
271 KOG0342 ATP-dependent RNA heli 47.3 73 0.0016 30.3 6.9 59 51-136 152-214 (543)
272 PRK00142 putative rhodanese-re 46.0 27 0.00058 31.0 3.8 40 51-90 169-208 (314)
273 PLN02723 3-mercaptopyruvate su 46.0 42 0.0009 29.6 5.0 51 37-89 89-140 (320)
274 PF14417 MEDS: MEDS: MEthanoge 45.5 1.4E+02 0.0029 24.1 7.7 51 23-76 20-70 (191)
275 PTZ00424 helicase 45; Provisio 45.0 2.2E+02 0.0048 25.2 10.8 80 52-158 95-179 (401)
276 KOG0334 RNA helicase [RNA proc 44.0 57 0.0012 33.5 6.0 47 53-103 438-488 (997)
277 cd05212 NAD_bind_m-THF_DH_Cycl 43.8 1.5E+02 0.0033 23.0 9.8 92 36-160 12-103 (140)
278 KOG0352 ATP-dependent DNA heli 43.6 44 0.00096 31.5 4.8 72 25-103 39-110 (641)
279 PRK02362 ski2-like helicase; P 43.2 57 0.0012 32.2 6.0 63 24-91 41-107 (737)
280 COG0607 PspE Rhodanese-related 43.0 28 0.00061 24.6 2.9 36 52-88 60-96 (110)
281 COG4098 comFA Superfamily II D 42.9 2.7E+02 0.0059 25.6 10.7 61 29-93 124-185 (441)
282 PRK11493 sseA 3-mercaptopyruva 42.8 47 0.001 28.5 4.8 51 37-89 73-124 (281)
283 PRK08762 molybdopterin biosynt 41.5 65 0.0014 29.1 5.6 38 51-88 55-92 (376)
284 smart00493 TOPRIM topoisomeras 41.3 1E+02 0.0022 20.3 6.1 45 56-102 2-46 (76)
285 smart00115 CASc Caspase, inter 41.2 2.2E+02 0.0047 24.0 11.3 89 51-169 6-106 (241)
286 TIGR03167 tRNA_sel_U_synt tRNA 41.1 74 0.0016 28.2 5.8 36 53-89 74-110 (311)
287 cd03028 GRX_PICOT_like Glutare 39.9 1.1E+02 0.0024 21.4 5.6 32 53-85 7-44 (90)
288 COG0300 DltE Short-chain dehyd 38.6 2.6E+02 0.0057 24.2 9.1 49 52-100 29-77 (265)
289 PRK00254 ski2-like helicase; P 38.5 1.9E+02 0.0041 28.5 8.8 65 23-91 40-108 (720)
290 PF11019 DUF2608: Protein of u 38.1 2.3E+02 0.005 24.1 8.3 56 26-87 155-211 (252)
291 COG1182 AcpD Acyl carrier prot 38.1 37 0.00081 28.3 3.2 27 128-171 89-115 (202)
292 PRK12899 secA preprotein trans 37.5 1.4E+02 0.003 30.9 7.5 42 54-96 136-181 (970)
293 PF13245 AAA_19: Part of AAA d 36.9 97 0.0021 21.2 4.8 46 28-73 16-62 (76)
294 PRK05597 molybdopterin biosynt 36.1 55 0.0012 29.4 4.3 38 52-89 313-350 (355)
295 KOG0335 ATP-dependent RNA heli 35.9 71 0.0015 30.2 5.0 36 53-88 152-190 (482)
296 PRK09200 preprotein translocas 35.8 1.8E+02 0.0039 29.3 8.1 43 52-95 118-165 (790)
297 KOG0343 RNA Helicase [RNA proc 35.3 62 0.0013 31.5 4.5 39 51-89 139-180 (758)
298 COG2519 GCD14 tRNA(1-methylade 34.8 1.3E+02 0.0028 26.1 6.1 50 21-77 163-212 (256)
299 cd01446 DSP_MapKP N-terminal r 34.6 64 0.0014 24.1 3.9 37 52-88 74-121 (132)
300 COG2927 HolC DNA polymerase II 34.3 1.8E+02 0.0038 23.0 6.3 46 37-86 16-61 (144)
301 COG1054 Predicted sulfurtransf 32.9 1.2E+02 0.0026 27.0 5.6 39 51-89 170-208 (308)
302 PRK12904 preprotein translocas 32.8 2.3E+02 0.005 28.8 8.3 45 52-97 121-169 (830)
303 TIGR02621 cas3_GSU0051 CRISPR- 32.7 81 0.0018 32.0 5.1 42 52-93 60-128 (844)
304 KOG0327 Translation initiation 32.5 81 0.0018 29.0 4.6 79 127-209 122-201 (397)
305 cd01443 Cdc25_Acr2p Cdc25 enzy 32.1 1.8E+02 0.0039 20.9 5.9 37 53-89 66-109 (113)
306 cd01531 Acr2p Eukaryotic arsen 31.5 79 0.0017 22.8 3.8 38 52-89 61-107 (113)
307 PRK09629 bifunctional thiosulf 31.5 91 0.002 30.3 5.2 51 37-89 67-118 (610)
308 KOG0348 ATP-dependent RNA heli 31.0 84 0.0018 30.5 4.6 79 50-155 208-293 (708)
309 PRK07878 molybdopterin biosynt 30.6 69 0.0015 29.2 4.0 39 51-89 341-379 (392)
310 COG1204 Superfamily II helicas 30.1 1.6E+02 0.0034 29.6 6.7 102 24-159 49-156 (766)
311 KOG0298 DEAD box-containing he 29.7 1E+02 0.0022 32.7 5.3 105 35-172 1204-1308(1394)
312 COG1129 MglA ABC-type sugar tr 29.5 2.1E+02 0.0045 27.3 7.0 84 59-186 371-460 (500)
313 KOG0351 ATP-dependent DNA heli 29.5 1.5E+02 0.0033 30.5 6.5 49 55-104 306-354 (941)
314 TIGR01041 ATP_syn_B_arch ATP s 28.8 5E+02 0.011 24.4 10.3 19 161-179 277-295 (458)
315 TIGR00096 probable S-adenosylm 27.7 1.4E+02 0.003 26.1 5.2 47 55-103 26-72 (276)
316 COG1099 Predicted metal-depend 27.1 4.1E+02 0.0089 22.9 7.7 87 28-147 133-219 (254)
317 PRK13103 secA preprotein trans 27.1 3.7E+02 0.0081 27.7 8.6 57 36-98 111-171 (913)
318 PRK11784 tRNA 2-selenouridine 26.9 92 0.002 28.0 4.1 49 52-102 87-136 (345)
319 PF07652 Flavi_DEAD: Flaviviru 26.5 1.4E+02 0.0029 23.8 4.5 37 38-77 21-57 (148)
320 KOG0340 ATP-dependent RNA heli 26.1 1.6E+02 0.0034 27.2 5.3 58 37-95 60-120 (442)
321 PRK09629 bifunctional thiosulf 24.7 1.5E+02 0.0032 28.9 5.3 49 38-88 210-258 (610)
322 TIGR00365 monothiol glutaredox 24.7 2.6E+02 0.0057 19.9 6.8 42 53-95 11-58 (97)
323 PF08704 GCD14: tRNA methyltra 24.3 1.5E+02 0.0031 25.5 4.7 52 20-77 112-163 (247)
324 PRK15483 type III restriction- 24.2 2.4E+02 0.0051 29.3 6.8 43 126-172 500-542 (986)
325 PRK07411 hypothetical protein; 24.2 1.1E+02 0.0023 28.0 4.0 37 52-89 341-377 (390)
326 PRK04196 V-type ATP synthase s 24.1 6E+02 0.013 23.8 10.5 19 161-179 279-297 (460)
327 KOG0336 ATP-dependent RNA heli 23.8 1.8E+02 0.004 27.4 5.4 49 51-103 292-343 (629)
328 COG1168 MalY Bifunctional PLP- 23.4 2.3E+02 0.0049 26.1 5.9 103 35-172 146-262 (388)
329 COG0610 Type I site-specific r 23.2 2.9E+02 0.0063 28.5 7.3 54 126-184 592-651 (962)
330 PRK06827 phosphoribosylpyropho 23.2 2.6E+02 0.0056 25.7 6.3 60 53-136 264-328 (382)
331 cd03031 GRX_GRX_like Glutaredo 23.1 3.2E+02 0.007 21.4 6.1 45 55-100 1-52 (147)
332 PRK01172 ski2-like helicase; P 22.9 4.2E+02 0.0091 25.8 8.1 61 25-90 40-104 (674)
333 PF04110 APG12: Ubiquitin-like 22.7 2.3E+02 0.0051 20.3 4.8 57 19-77 12-74 (87)
334 cd03418 GRX_GRXb_1_3_like Glut 22.5 2.3E+02 0.0049 18.4 6.2 44 56-100 2-46 (75)
335 COG0353 RecR Recombinational D 22.4 3.6E+02 0.0077 22.5 6.4 73 53-169 78-159 (198)
336 PF03358 FMN_red: NADPH-depend 21.7 3.5E+02 0.0077 20.2 6.1 54 128-198 72-132 (152)
337 KOG1002 Nucleotide excision re 21.4 2.5E+02 0.0055 27.2 5.9 48 51-102 229-277 (791)
338 PHA03371 circ protein; Provisi 21.4 74 0.0016 27.1 2.2 32 141-172 30-75 (240)
339 PRK05600 thiamine biosynthesis 21.3 1.7E+02 0.0036 26.6 4.7 36 53-89 332-369 (370)
340 KOG1133 Helicase of the DEAD s 21.2 8.6E+02 0.019 24.6 11.6 100 35-160 613-720 (821)
341 PRK03692 putative UDP-N-acetyl 21.1 5.2E+02 0.011 22.0 9.3 64 37-103 92-156 (243)
342 PRK15327 type III secretion sy 21.0 6.7E+02 0.014 23.2 9.2 73 28-103 164-241 (393)
343 TIGR02744 TrbI_Ftype type-F co 20.9 3.8E+02 0.0081 20.2 7.1 41 52-102 29-69 (112)
344 COG1922 WecG Teichoic acid bio 20.6 5.6E+02 0.012 22.1 9.0 65 36-103 94-160 (253)
345 COG1609 PurR Transcriptional r 20.5 5.8E+02 0.013 22.3 9.5 31 58-88 155-185 (333)
346 cd04823 ALAD_PBGS_aspartate_ri 20.2 1.9E+02 0.0042 25.9 4.6 28 62-90 52-79 (320)
No 1
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.1e-36 Score=259.57 Aligned_cols=164 Identities=26% Similarity=0.558 Sum_probs=154.6
Q ss_pred CCCCCceEEEEEecCcchHHHHHHHHHHHhhcCCCCCCcEEEEeCchHHHHHHHHHHhccCCceEEEecCCCCHHHHHHH
Q 028124 17 SHFSQPRHFYVAVDRLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLI 96 (213)
Q Consensus 17 ~~~~~i~~~~~~~~~~~~K~~~L~~ll~~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~lhg~~~~~~R~~~ 96 (213)
-+..+|+|||+.++.+++|++.|++|...++. .+++|||||+..++||.+.++... +.+.++||+|+++||.++
T Consensus 235 ltlEgIKqf~v~ve~EewKfdtLcdLYd~LtI-----tQavIFcnTk~kVdwLtekm~~~n-ftVssmHGDm~qkERd~i 308 (400)
T KOG0328|consen 235 LTLEGIKQFFVAVEKEEWKFDTLCDLYDTLTI-----TQAVIFCNTKRKVDWLTEKMREAN-FTVSSMHGDMEQKERDKI 308 (400)
T ss_pred CchhhhhhheeeechhhhhHhHHHHHhhhheh-----heEEEEecccchhhHHHHHHHhhC-ceeeeccCCcchhHHHHH
Confidence 34567999999999999999999999998544 799999999999999999998875 899999999999999999
Q ss_pred HHHHhcccccccccccccCCCCCcCCCCCCceeEEEEeCCCCCcCcCCCCCCCCCEEEEecCCCChHHHHHhhccc--cC
Q 028124 97 LEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTC--LA 174 (213)
Q Consensus 97 l~~Fr~g~~~~~~~~~~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~rGld~~~v~~VI~yd~P~~~~~yi~R~GR~--~~ 174 (213)
+.+||+|. .++||+||+ .+||+|+|.|++|||||+|.+.+.||||+||. .|
T Consensus 309 m~dFRsg~-----------------------SrvLitTDV----waRGiDv~qVslviNYDLP~nre~YIHRIGRSGRFG 361 (400)
T KOG0328|consen 309 MNDFRSGK-----------------------SRVLITTDV----WARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFG 361 (400)
T ss_pred HHHhhcCC-----------------------ceEEEEech----hhccCCcceeEEEEecCCCccHHHHhhhhccccccC
Confidence 99999984 999999999 99999999999999999999999999999995 68
Q ss_pred CCCeEEEEEeCchhHHHHHHHHHhcccccccCccccccC
Q 028124 175 ADGSVINIVVGGEVVTLRSMEESLGLIVAEVPINISEIL 213 (213)
Q Consensus 175 ~~g~~i~~~~~~e~~~~~~le~~l~~~~~~~~~~~~~~~ 213 (213)
+.|++|+|+..+|...++.+|++++..+.++|+++.+++
T Consensus 362 RkGvainFVk~~d~~~lrdieq~yst~i~emp~nvad~i 400 (400)
T KOG0328|consen 362 RKGVAINFVKSDDLRILRDIEQYYSTQIDEMPMNVADLI 400 (400)
T ss_pred CcceEEEEecHHHHHHHHHHHHHHhhhcccccchhhhcC
Confidence 999999999999999999999999999999999988764
No 2
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=9.3e-33 Score=243.49 Aligned_cols=160 Identities=25% Similarity=0.397 Sum_probs=149.7
Q ss_pred CCCCCceEEEEEecCcchHHHHHHHHHHHhhcCCCCCCcEEEEeCchHHHHHHHHHHhccCCceEEEecCCCCHHHHHHH
Q 028124 17 SHFSQPRHFYVAVDRLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLI 96 (213)
Q Consensus 17 ~~~~~i~~~~~~~~~~~~K~~~L~~ll~~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~lhg~~~~~~R~~~ 96 (213)
.+-++++|+|.+++... |...|..+|+. ..+..+||||+++.++.+++-.|+..| +.+..+||+|++..|...
T Consensus 270 ~tv~~lkQ~ylfv~~k~-K~~yLV~ll~e-----~~g~s~iVF~~t~~tt~~la~~L~~lg-~~a~~LhGqmsq~~Rlg~ 342 (476)
T KOG0330|consen 270 QTVDHLKQTYLFVPGKD-KDTYLVYLLNE-----LAGNSVIVFCNTCNTTRFLALLLRNLG-FQAIPLHGQMSQSKRLGA 342 (476)
T ss_pred cchHHhhhheEeccccc-cchhHHHHHHh-----hcCCcEEEEEeccchHHHHHHHHHhcC-cceecccchhhHHHHHHH
Confidence 45578999999999987 99999999998 455899999999999999999999998 899999999999999999
Q ss_pred HHHHhcccccccccccccCCCCCcCCCCCCceeEEEEeCCCCCcCcCCCCCCCCCEEEEecCCCChHHHHHhhccc--cC
Q 028124 97 LEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTC--LA 174 (213)
Q Consensus 97 l~~Fr~g~~~~~~~~~~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~rGld~~~v~~VI~yd~P~~~~~yi~R~GR~--~~ 174 (213)
+++|++|. .+||||||+ ++||+|+|.|++|||||+|.+..+||||+||+ .|
T Consensus 343 l~~Fk~~~-----------------------r~iLv~TDV----aSRGLDip~Vd~VVNyDiP~~skDYIHRvGRtaRaG 395 (476)
T KOG0330|consen 343 LNKFKAGA-----------------------RSILVCTDV----ASRGLDIPHVDVVVNYDIPTHSKDYIHRVGRTARAG 395 (476)
T ss_pred HHHHhccC-----------------------CcEEEecch----hcccCCCCCceEEEecCCCCcHHHHHHHcccccccC
Confidence 99999985 999999999 99999999999999999999999999999995 78
Q ss_pred CCCeEEEEEeCchhHHHHHHHHHhcccccccCcccc
Q 028124 175 ADGSVINIVVGGEVVTLRSMEESLGLIVAEVPINIS 210 (213)
Q Consensus 175 ~~g~~i~~~~~~e~~~~~~le~~l~~~~~~~~~~~~ 210 (213)
++|.+|+||+..|.+.+++||..++.++.+.+++-.
T Consensus 396 rsG~~ItlVtqyDve~~qrIE~~~gkkl~~~~~~~~ 431 (476)
T KOG0330|consen 396 RSGKAITLVTQYDVELVQRIEHALGKKLPEYKVDKN 431 (476)
T ss_pred CCcceEEEEehhhhHHHHHHHHHHhcCCCccCcchH
Confidence 999999999999999999999999999988666543
No 3
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=1.3e-30 Score=242.99 Aligned_cols=153 Identities=25% Similarity=0.430 Sum_probs=142.3
Q ss_pred CCCCceEEEEEecCcchHHHHHHHHHHHhhcCCCCCCcEEEEeCchHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHH
Q 028124 18 HFSQPRHFYVAVDRLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLIL 97 (213)
Q Consensus 18 ~~~~i~~~~~~~~~~~~K~~~L~~ll~~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~lhg~~~~~~R~~~l 97 (213)
+...|.|+|+.++..+.|+..|..+++. ....++||||+|+..++.|+..|...| +++..+||+|++++|.+++
T Consensus 243 ~~~~i~q~~~~v~~~~~k~~~L~~ll~~-----~~~~~~IVF~~tk~~~~~l~~~l~~~g-~~~~~lhG~l~q~~R~~~l 316 (513)
T COG0513 243 TLKKIKQFYLEVESEEEKLELLLKLLKD-----EDEGRVIVFVRTKRLVEELAESLRKRG-FKVAALHGDLPQEERDRAL 316 (513)
T ss_pred cccCceEEEEEeCCHHHHHHHHHHHHhc-----CCCCeEEEEeCcHHHHHHHHHHHHHCC-CeEEEecCCCCHHHHHHHH
Confidence 6789999999999866699999999987 344589999999999999999999998 8999999999999999999
Q ss_pred HHHhcccccccccccccCCCCCcCCCCCCceeEEEEeCCCCCcCcCCCCCCCCCEEEEecCCCChHHHHHhhccc--cCC
Q 028124 98 EEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTC--LAA 175 (213)
Q Consensus 98 ~~Fr~g~~~~~~~~~~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~rGld~~~v~~VI~yd~P~~~~~yi~R~GR~--~~~ 175 (213)
++|++|. .++|||||+ ++||||++++++|||||+|.++++|+||+||+ +|+
T Consensus 317 ~~F~~g~-----------------------~~vLVaTDv----aaRGiDi~~v~~VinyD~p~~~e~yvHRiGRTgRaG~ 369 (513)
T COG0513 317 EKFKDGE-----------------------LRVLVATDV----AARGLDIPDVSHVINYDLPLDPEDYVHRIGRTGRAGR 369 (513)
T ss_pred HHHHcCC-----------------------CCEEEEech----hhccCCccccceeEEccCCCCHHHheeccCccccCCC
Confidence 9999985 999999999 99999999999999999999999999999996 678
Q ss_pred CCeEEEEEeCc-hhHHHHHHHHHhccccc
Q 028124 176 DGSVINIVVGG-EVVTLRSMEESLGLIVA 203 (213)
Q Consensus 176 ~g~~i~~~~~~-e~~~~~~le~~l~~~~~ 203 (213)
.|.+++|+.+. |...+..+++.++..+.
T Consensus 370 ~G~ai~fv~~~~e~~~l~~ie~~~~~~~~ 398 (513)
T COG0513 370 KGVAISFVTEEEEVKKLKRIEKRLERKLP 398 (513)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHhcccc
Confidence 99999999976 99999999999877754
No 4
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.97 E-value=5.3e-31 Score=242.24 Aligned_cols=162 Identities=21% Similarity=0.352 Sum_probs=145.6
Q ss_pred CCCCCceEEEEEecCcchHHHHHHHHHHHhhcCCCCCCcEEEEeCchHHHHHHHHHHhccCCceEEEecCCCCHHHHHHH
Q 028124 17 SHFSQPRHFYVAVDRLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLI 96 (213)
Q Consensus 17 ~~~~~i~~~~~~~~~~~~K~~~L~~ll~~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~lhg~~~~~~R~~~ 96 (213)
....+|.|....++... |...|.++|..+.. .++.|+||||+|+.+|++|+..|+..+ +.+..+||+.++.+|..+
T Consensus 308 ~a~~~i~qive~~~~~~-K~~~l~~lL~~~~~--~~~~KvIIFc~tkr~~~~l~~~l~~~~-~~a~~iHGd~sQ~eR~~~ 383 (519)
T KOG0331|consen 308 KANHNIRQIVEVCDETA-KLRKLGKLLEDISS--DSEGKVIIFCETKRTCDELARNLRRKG-WPAVAIHGDKSQSERDWV 383 (519)
T ss_pred hhhcchhhhhhhcCHHH-HHHHHHHHHHHHhc--cCCCcEEEEecchhhHHHHHHHHHhcC-cceeeecccccHHHHHHH
Confidence 55678999999999555 99999999988542 567899999999999999999999987 899999999999999999
Q ss_pred HHHHhcccccccccccccCCCCCcCCCCCCceeEEEEeCCCCCcCcCCCCCCCCCEEEEecCCCChHHHHHhhcccc--C
Q 028124 97 LEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCL--A 174 (213)
Q Consensus 97 l~~Fr~g~~~~~~~~~~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~rGld~~~v~~VI~yd~P~~~~~yi~R~GR~~--~ 174 (213)
|+.||+|. ..+|||||+ ++||||+++|++|||||+|.+.++|+||+||+| +
T Consensus 384 L~~FreG~-----------------------~~vLVATdV----AaRGLDi~dV~lVInydfP~~vEdYVHRiGRTGRa~ 436 (519)
T KOG0331|consen 384 LKGFREGK-----------------------SPVLVATDV----AARGLDVPDVDLVINYDFPNNVEDYVHRIGRTGRAG 436 (519)
T ss_pred HHhcccCC-----------------------cceEEEccc----ccccCCCccccEEEeCCCCCCHHHHHhhcCccccCC
Confidence 99999995 999999999 999999999999999999999999999999974 5
Q ss_pred CCCeEEEEEeCchhHHHHHHHHHhcccccccCccc
Q 028124 175 ADGSVINIVVGGEVVTLRSMEESLGLIVAEVPINI 209 (213)
Q Consensus 175 ~~g~~i~~~~~~e~~~~~~le~~l~~~~~~~~~~~ 209 (213)
+.|.+++|++..+......+.+.+.-..+.+|-.+
T Consensus 437 ~~G~A~tfft~~~~~~a~~l~~~l~e~~q~v~~~l 471 (519)
T KOG0331|consen 437 KKGTAITFFTSDNAKLARELIKVLREAGQTVPPDL 471 (519)
T ss_pred CCceEEEEEeHHHHHHHHHHHHHHHHccCCCChHH
Confidence 78999999999999998888888866666665444
No 5
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.97 E-value=4.1e-31 Score=228.74 Aligned_cols=161 Identities=24% Similarity=0.446 Sum_probs=150.8
Q ss_pred CCCCCceEEEEEecCcchHHHHHHHHHHHhhcCCCCCCcEEEEeCchHHHHHHHHHHhccCCceEEEecCCCCHHHHHHH
Q 028124 17 SHFSQPRHFYVAVDRLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLI 96 (213)
Q Consensus 17 ~~~~~i~~~~~~~~~~~~K~~~L~~ll~~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~lhg~~~~~~R~~~ 96 (213)
-+..++.|||.++...+ |+.-|..|+..+ .-.++|||||+..++|.||..+...| +.+.++|+.|.++.|..+
T Consensus 292 Ltl~GvtQyYafV~e~q-KvhCLntLfskL-----qINQsIIFCNS~~rVELLAkKITelG-yscyyiHakM~Q~hRNrV 364 (459)
T KOG0326|consen 292 LTLKGVTQYYAFVEERQ-KVHCLNTLFSKL-----QINQSIIFCNSTNRVELLAKKITELG-YSCYYIHAKMAQEHRNRV 364 (459)
T ss_pred hhhcchhhheeeechhh-hhhhHHHHHHHh-----cccceEEEeccchHhHHHHHHHHhcc-chhhHHHHHHHHhhhhhh
Confidence 45578999999999987 999999988874 34799999999999999999999998 899999999999999999
Q ss_pred HHHHhcccccccccccccCCCCCcCCCCCCceeEEEEeCCCCCcCcCCCCCCCCCEEEEecCCCChHHHHHhhccc--cC
Q 028124 97 LEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTC--LA 174 (213)
Q Consensus 97 l~~Fr~g~~~~~~~~~~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~rGld~~~v~~VI~yd~P~~~~~yi~R~GR~--~~ 174 (213)
+.+||+|. ++.|||||. +.||+|++.+++|||||+|++.++|+||+||. .|
T Consensus 365 FHdFr~G~-----------------------crnLVctDL----~TRGIDiqavNvVINFDfpk~aEtYLHRIGRsGRFG 417 (459)
T KOG0326|consen 365 FHDFRNGK-----------------------CRNLVCTDL----FTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFG 417 (459)
T ss_pred hhhhhccc-----------------------cceeeehhh----hhcccccceeeEEEecCCCCCHHHHHHHccCCccCC
Confidence 99999994 999999999 99999999999999999999999999999996 58
Q ss_pred CCCeEEEEEeCchhHHHHHHHHHhcccccccCccccc
Q 028124 175 ADGSVINIVVGGEVVTLRSMEESLGLIVAEVPINISE 211 (213)
Q Consensus 175 ~~g~~i~~~~~~e~~~~~~le~~l~~~~~~~~~~~~~ 211 (213)
..|.+|++++.+|...+..+|+.+|.++.++|..++.
T Consensus 418 hlGlAInLityedrf~L~~IE~eLGtEI~pip~~iDk 454 (459)
T KOG0326|consen 418 HLGLAINLITYEDRFNLYRIEQELGTEIKPIPSNIDK 454 (459)
T ss_pred CcceEEEEEehhhhhhHHHHHHHhccccccCCCcCCc
Confidence 8899999999999999999999999999999987754
No 6
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=99.97 E-value=1.3e-29 Score=230.24 Aligned_cols=146 Identities=19% Similarity=0.366 Sum_probs=135.3
Q ss_pred CCceEEEEEecCcchHHHHHHHHHHHhhcCCCCCCcEEEEeCchHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHH
Q 028124 20 SQPRHFYVAVDRLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEE 99 (213)
Q Consensus 20 ~~i~~~~~~~~~~~~K~~~L~~ll~~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~lhg~~~~~~R~~~l~~ 99 (213)
+-++|.++.++.++ |+..|.++|+. ....++|||+|+++.|++||+.|.+.| +++..|||+-++++|.-+|+.
T Consensus 490 ~rveQ~v~m~~ed~-k~kkL~eil~~-----~~~ppiIIFvN~kk~~d~lAk~LeK~g-~~~~tlHg~k~qeQRe~aL~~ 562 (673)
T KOG0333|consen 490 PRVEQKVEMVSEDE-KRKKLIEILES-----NFDPPIIIFVNTKKGADALAKILEKAG-YKVTTLHGGKSQEQRENALAD 562 (673)
T ss_pred cchheEEEEecchH-HHHHHHHHHHh-----CCCCCEEEEEechhhHHHHHHHHhhcc-ceEEEeeCCccHHHHHHHHHH
Confidence 45899999999988 89999999988 356899999999999999999999998 899999999999999999999
Q ss_pred HhcccccccccccccCCCCCcCCCCCCceeEEEEeCCCCCcCcCCCCCCCCCEEEEecCCCChHHHHHhhccc--cCCCC
Q 028124 100 FRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTC--LAADG 177 (213)
Q Consensus 100 Fr~g~~~~~~~~~~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~rGld~~~v~~VI~yd~P~~~~~yi~R~GR~--~~~~g 177 (213)
||.|. .+||||||+ ++||+|+|+|++|||||++.++++|+|||||+ +|+.|
T Consensus 563 fr~~t-----------------------~dIlVaTDv----AgRGIDIpnVSlVinydmaksieDYtHRIGRTgRAGk~G 615 (673)
T KOG0333|consen 563 FREGT-----------------------GDILVATDV----AGRGIDIPNVSLVINYDMAKSIEDYTHRIGRTGRAGKSG 615 (673)
T ss_pred HHhcC-----------------------CCEEEEecc----cccCCCCCccceeeecchhhhHHHHHHHhccccccccCc
Confidence 99985 999999999 99999999999999999999999999999996 68899
Q ss_pred eEEEEEeCchhHHHHHHHHHhc
Q 028124 178 SVINIVVGGEVVTLRSMEESLG 199 (213)
Q Consensus 178 ~~i~~~~~~e~~~~~~le~~l~ 199 (213)
.+|+|+++.|-..+..|.+.+-
T Consensus 616 taiSflt~~dt~v~ydLkq~l~ 637 (673)
T KOG0333|consen 616 TAISFLTPADTAVFYDLKQALR 637 (673)
T ss_pred eeEEEeccchhHHHHHHHHHHH
Confidence 9999999998777777766553
No 7
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.96 E-value=1.6e-29 Score=221.04 Aligned_cols=162 Identities=25% Similarity=0.357 Sum_probs=150.3
Q ss_pred CCCCCCceEEEEEecCcchHHHHHHHHHHHhhcCCCCCCcEEEEeCchHHHHHHHHHHhccCCceEEEecCCCCHHHHHH
Q 028124 16 PSHFSQPRHFYVAVDRLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTL 95 (213)
Q Consensus 16 ~~~~~~i~~~~~~~~~~~~K~~~L~~ll~~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~lhg~~~~~~R~~ 95 (213)
.++.+.+.|-|+.++... |-..|..+|..+.. .....++||+|+..+|+.|+..|+..+ +.+..+|+.|++.+|..
T Consensus 220 vstvetL~q~yI~~~~~v-kdaYLv~~Lr~~~~--~~~~simIFvnttr~cQ~l~~~l~~le-~r~~~lHs~m~Q~eR~~ 295 (442)
T KOG0340|consen 220 VSTVETLYQGYILVSIDV-KDAYLVHLLRDFEN--KENGSIMIFVNTTRECQLLSMTLKNLE-VRVVSLHSQMPQKERLA 295 (442)
T ss_pred CCchhhhhhheeecchhh-hHHHHHHHHhhhhh--ccCceEEEEeehhHHHHHHHHHHhhhc-eeeeehhhcchHHHHHH
Confidence 466788999999999987 99999999987433 246889999999999999999999997 89999999999999999
Q ss_pred HHHHHhcccccccccccccCCCCCcCCCCCCceeEEEEeCCCCCcCcCCCCCCCCCEEEEecCCCChHHHHHhhccc--c
Q 028124 96 ILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTC--L 173 (213)
Q Consensus 96 ~l~~Fr~g~~~~~~~~~~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~rGld~~~v~~VI~yd~P~~~~~yi~R~GR~--~ 173 (213)
.|.+||++. .++|||||+ ++||+|+|.|++|||||+|+++.+||||+||+ +
T Consensus 296 aLsrFrs~~-----------------------~~iliaTDV----AsRGLDIP~V~LVvN~diPr~P~~yiHRvGRtARA 348 (442)
T KOG0340|consen 296 ALSRFRSNA-----------------------ARILIATDV----ASRGLDIPTVELVVNHDIPRDPKDYIHRVGRTARA 348 (442)
T ss_pred HHHHHhhcC-----------------------ccEEEEech----hhcCCCCCceeEEEecCCCCCHHHHHHhhcchhcc
Confidence 999999985 999999999 99999999999999999999999999999995 8
Q ss_pred CCCCeEEEEEeCchhHHHHHHHHHhcccccccCcc
Q 028124 174 AADGSVINIVVGGEVVTLRSMEESLGLIVAEVPIN 208 (213)
Q Consensus 174 ~~~g~~i~~~~~~e~~~~~~le~~l~~~~~~~~~~ 208 (213)
|+.|.+|+|++..|.+.+..+|+.+|.++.|.+..
T Consensus 349 GR~G~aiSivt~rDv~l~~aiE~~igkKl~e~~~~ 383 (442)
T KOG0340|consen 349 GRKGMAISIVTQRDVELLQAIEEEIGKKLTEYNKV 383 (442)
T ss_pred cCCcceEEEechhhHHHHHHHHHHHhccccccccc
Confidence 99999999999999999999999999999988754
No 8
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.96 E-value=4.5e-29 Score=227.14 Aligned_cols=161 Identities=19% Similarity=0.270 Sum_probs=144.4
Q ss_pred CCCCceEEEEEecCcchHHHHHHHHHHHhhcCCCCCCcEEEEeCchHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHH
Q 028124 18 HFSQPRHFYVAVDRLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLIL 97 (213)
Q Consensus 18 ~~~~i~~~~~~~~~~~~K~~~L~~ll~~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~lhg~~~~~~R~~~l 97 (213)
....+++.+......+ |...|..+++. ....++||||+++..|+.++..|...+ +.+..+||+|++++|..++
T Consensus 226 ~~~~i~~~~~~~~~~~-k~~~l~~ll~~-----~~~~~~lVF~~t~~~~~~l~~~L~~~g-~~v~~lhg~~~~~~R~~~l 298 (423)
T PRK04837 226 TGHRIKEELFYPSNEE-KMRLLQTLIEE-----EWPDRAIIFANTKHRCEEIWGHLAADG-HRVGLLTGDVAQKKRLRIL 298 (423)
T ss_pred CCCceeEEEEeCCHHH-HHHHHHHHHHh-----cCCCeEEEEECCHHHHHHHHHHHHhCC-CcEEEecCCCChhHHHHHH
Confidence 3456777777666554 99999998876 356799999999999999999999887 8999999999999999999
Q ss_pred HHHhcccccccccccccCCCCCcCCCCCCceeEEEEeCCCCCcCcCCCCCCCCCEEEEecCCCChHHHHHhhccc--cCC
Q 028124 98 EEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTC--LAA 175 (213)
Q Consensus 98 ~~Fr~g~~~~~~~~~~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~rGld~~~v~~VI~yd~P~~~~~yi~R~GR~--~~~ 175 (213)
++|++|+ +++|||||+ ++||+|+|++++|||||+|.+.++|+||+||+ .|+
T Consensus 299 ~~F~~g~-----------------------~~vLVaTdv----~~rGiDip~v~~VI~~d~P~s~~~yiqR~GR~gR~G~ 351 (423)
T PRK04837 299 EEFTRGD-----------------------LDILVATDV----AARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGA 351 (423)
T ss_pred HHHHcCC-----------------------CcEEEEech----hhcCCCccccCEEEEeCCCCchhheEeccccccCCCC
Confidence 9999985 999999999 99999999999999999999999999999996 577
Q ss_pred CCeEEEEEeCchhHHHHHHHHHhcccccccCcccccc
Q 028124 176 DGSVINIVVGGEVVTLRSMEESLGLIVAEVPINISEI 212 (213)
Q Consensus 176 ~g~~i~~~~~~e~~~~~~le~~l~~~~~~~~~~~~~~ 212 (213)
.|.+|+|+.+++...+..+++.++..+++.+++..++
T Consensus 352 ~G~ai~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 388 (423)
T PRK04837 352 SGHSISLACEEYALNLPAIETYIGHSIPVSKYDSDAL 388 (423)
T ss_pred CeeEEEEeCHHHHHHHHHHHHHhCCCCCCccCChhhh
Confidence 8999999999999999999999999988777766554
No 9
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.96 E-value=7.4e-29 Score=218.00 Aligned_cols=157 Identities=22% Similarity=0.384 Sum_probs=143.1
Q ss_pred CCCCCceEEEEEecCcchHHHHHHHHHHHhhcCCCCCCcEEEEeCchHHHHHHHHHHhccCCceEEEecCCCCHHHHHHH
Q 028124 17 SHFSQPRHFYVAVDRLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLI 96 (213)
Q Consensus 17 ~~~~~i~~~~~~~~~~~~K~~~L~~ll~~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~lhg~~~~~~R~~~ 96 (213)
-+.++|+|+|+.|+..++|+++|.++...+ .-++.||||.|+++|.+|+..|+..| ..+..+||+|.-.+|..+
T Consensus 299 l~L~~IkQlyv~C~~~~~K~~~l~~lyg~~-----tigqsiIFc~tk~ta~~l~~~m~~~G-h~V~~l~G~l~~~~R~~i 372 (477)
T KOG0332|consen 299 LALDNIKQLYVLCACRDDKYQALVNLYGLL-----TIGQSIIFCHTKATAMWLYEEMRAEG-HQVSLLHGDLTVEQRAAI 372 (477)
T ss_pred ccccchhhheeeccchhhHHHHHHHHHhhh-----hhhheEEEEeehhhHHHHHHHHHhcC-ceeEEeeccchhHHHHHH
Confidence 456889999999999999999999988774 34799999999999999999999998 699999999999999999
Q ss_pred HHHHhcccccccccccccCCCCCcCCCCCCceeEEEEeCCCCCcCcCCCCCCCCCEEEEecCCC------ChHHHHHhhc
Q 028124 97 LEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPT------KKETYIRRMT 170 (213)
Q Consensus 97 l~~Fr~g~~~~~~~~~~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~rGld~~~v~~VI~yd~P~------~~~~yi~R~G 170 (213)
+.+||.| +.++||+|++ .+||+|++.|++|||||+|- +.++|+||+|
T Consensus 373 i~~Fr~g-----------------------~~kVLitTnV----~ARGiDv~qVs~VvNydlP~~~~~~pD~etYlHRiG 425 (477)
T KOG0332|consen 373 IDRFREG-----------------------KEKVLITTNV----CARGIDVAQVSVVVNYDLPVKYTGEPDYETYLHRIG 425 (477)
T ss_pred HHHHhcC-----------------------cceEEEEech----hhcccccceEEEEEecCCccccCCCCCHHHHHHHhc
Confidence 9999998 4999999999 89999999999999999996 6899999999
Q ss_pred cc--cCCCCeEEEEEeCc-hhHHHHHHHHHhcccccccC
Q 028124 171 TC--LAADGSVINIVVGG-EVVTLRSMEESLGLIVAEVP 206 (213)
Q Consensus 171 R~--~~~~g~~i~~~~~~-e~~~~~~le~~l~~~~~~~~ 206 (213)
|+ .|+.|.+|+|+..+ ....+..|+++++..+..+.
T Consensus 426 RtGRFGkkG~a~n~v~~~~s~~~mn~iq~~F~~~i~~~~ 464 (477)
T KOG0332|consen 426 RTGRFGKKGLAINLVDDKDSMNIMNKIQKHFNMKIKRLD 464 (477)
T ss_pred ccccccccceEEEeecccCcHHHHHHHHHHHhhcceecC
Confidence 97 58999999999754 67888999999987776543
No 10
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=99.95 E-value=1.4e-27 Score=219.47 Aligned_cols=155 Identities=23% Similarity=0.373 Sum_probs=141.6
Q ss_pred CCCceEEEEEecCcchHHHHHHHHHHHhhcCCCCCCcEEEEeCchHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHH
Q 028124 19 FSQPRHFYVAVDRLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILE 98 (213)
Q Consensus 19 ~~~i~~~~~~~~~~~~K~~~L~~ll~~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~lhg~~~~~~R~~~l~ 98 (213)
...+.|+|+.++..+ |++.|..++.. ....++||||+++..++.+++.|...+ +.+..+||+|++.+|..+++
T Consensus 214 ~~~i~~~~~~~~~~~-k~~~l~~ll~~-----~~~~~~lVF~~t~~~~~~l~~~L~~~~-~~v~~~hg~~~~~eR~~~l~ 286 (460)
T PRK11776 214 LPAIEQRFYEVSPDE-RLPALQRLLLH-----HQPESCVVFCNTKKECQEVADALNAQG-FSALALHGDLEQRDRDQVLV 286 (460)
T ss_pred CCCeeEEEEEeCcHH-HHHHHHHHHHh-----cCCCceEEEECCHHHHHHHHHHHHhCC-CcEEEEeCCCCHHHHHHHHH
Confidence 456899999998877 99999999976 345789999999999999999999987 89999999999999999999
Q ss_pred HHhcccccccccccccCCCCCcCCCCCCceeEEEEeCCCCCcCcCCCCCCCCCEEEEecCCCChHHHHHhhccc--cCCC
Q 028124 99 EFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTC--LAAD 176 (213)
Q Consensus 99 ~Fr~g~~~~~~~~~~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~rGld~~~v~~VI~yd~P~~~~~yi~R~GR~--~~~~ 176 (213)
+|++|+ .++||||++ ++||+|+|++++|||||+|.+.++|+||+||+ .|+.
T Consensus 287 ~F~~g~-----------------------~~vLVaTdv----~~rGiDi~~v~~VI~~d~p~~~~~yiqR~GRtGR~g~~ 339 (460)
T PRK11776 287 RFANRS-----------------------CSVLVATDV----AARGLDIKALEAVINYELARDPEVHVHRIGRTGRAGSK 339 (460)
T ss_pred HHHcCC-----------------------CcEEEEecc----cccccchhcCCeEEEecCCCCHhHhhhhcccccCCCCc
Confidence 999985 999999999 99999999999999999999999999999997 5677
Q ss_pred CeEEEEEeCchhHHHHHHHHHhcccccccCc
Q 028124 177 GSVINIVVGGEVVTLRSMEESLGLIVAEVPI 207 (213)
Q Consensus 177 g~~i~~~~~~e~~~~~~le~~l~~~~~~~~~ 207 (213)
|.+++|+.+.|...+..+++.++..+...++
T Consensus 340 G~ai~l~~~~e~~~~~~i~~~~~~~~~~~~l 370 (460)
T PRK11776 340 GLALSLVAPEEMQRANAIEDYLGRKLNWEPL 370 (460)
T ss_pred ceEEEEEchhHHHHHHHHHHHhCCCCceecC
Confidence 9999999999999999999999887765443
No 11
>PTZ00110 helicase; Provisional
Probab=99.95 E-value=1.6e-27 Score=223.85 Aligned_cols=163 Identities=20% Similarity=0.318 Sum_probs=145.6
Q ss_pred CCCCCceEEEEEecCcchHHHHHHHHHHHhhcCCCCCCcEEEEeCchHHHHHHHHHHhccCCceEEEecCCCCHHHHHHH
Q 028124 17 SHFSQPRHFYVAVDRLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLI 96 (213)
Q Consensus 17 ~~~~~i~~~~~~~~~~~~K~~~L~~ll~~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~lhg~~~~~~R~~~ 96 (213)
....+++|.+..+...+ |...|.++++.+.. ...++||||+++++|+.|+..|...+ +.+..+||++++++|..+
T Consensus 345 ~~~~~i~q~~~~~~~~~-k~~~L~~ll~~~~~---~~~k~LIF~~t~~~a~~l~~~L~~~g-~~~~~ihg~~~~~eR~~i 419 (545)
T PTZ00110 345 TACHNIKQEVFVVEEHE-KRGKLKMLLQRIMR---DGDKILIFVETKKGADFLTKELRLDG-WPALCIHGDKKQEERTWV 419 (545)
T ss_pred ccCCCeeEEEEEEechh-HHHHHHHHHHHhcc---cCCeEEEEecChHHHHHHHHHHHHcC-CcEEEEECCCcHHHHHHH
Confidence 34467888888887765 99999999987432 56899999999999999999999887 799999999999999999
Q ss_pred HHHHhcccccccccccccCCCCCcCCCCCCceeEEEEeCCCCCcCcCCCCCCCCCEEEEecCCCChHHHHHhhccc--cC
Q 028124 97 LEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTC--LA 174 (213)
Q Consensus 97 l~~Fr~g~~~~~~~~~~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~rGld~~~v~~VI~yd~P~~~~~yi~R~GR~--~~ 174 (213)
+++|++|. .++|||||+ ++||+|++++++|||||+|.++++|+||+||+ .|
T Consensus 420 l~~F~~G~-----------------------~~ILVaTdv----~~rGIDi~~v~~VI~~d~P~s~~~yvqRiGRtGR~G 472 (545)
T PTZ00110 420 LNEFKTGK-----------------------SPIMIATDV----ASRGLDVKDVKYVINFDFPNQIEDYVHRIGRTGRAG 472 (545)
T ss_pred HHHHhcCC-----------------------CcEEEEcch----hhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCC
Confidence 99999985 999999999 99999999999999999999999999999997 56
Q ss_pred CCCeEEEEEeCchhHHHHHHHHHhcccccccCccccc
Q 028124 175 ADGSVINIVVGGEVVTLRSMEESLGLIVAEVPINISE 211 (213)
Q Consensus 175 ~~g~~i~~~~~~e~~~~~~le~~l~~~~~~~~~~~~~ 211 (213)
+.|.+++|+++.+......+.+.+....+++|-.+.+
T Consensus 473 ~~G~ai~~~~~~~~~~~~~l~~~l~~~~q~vp~~l~~ 509 (545)
T PTZ00110 473 AKGASYTFLTPDKYRLARDLVKVLREAKQPVPPELEK 509 (545)
T ss_pred CCceEEEEECcchHHHHHHHHHHHHHccCCCCHHHHH
Confidence 7899999999999999999999988888888865544
No 12
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=99.95 E-value=7.8e-28 Score=211.88 Aligned_cols=161 Identities=27% Similarity=0.564 Sum_probs=152.7
Q ss_pred CCCCCceEEEEEecCcchHHHHHHHHHHHhhcCCCCCCcEEEEeCchHHHHHHHHHHhccCCceEEEecCCCCHHHHHHH
Q 028124 17 SHFSQPRHFYVAVDRLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLI 96 (213)
Q Consensus 17 ~~~~~i~~~~~~~~~~~~K~~~L~~ll~~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~lhg~~~~~~R~~~ 96 (213)
-+...++|+|+.+..++ |+..|+++.+. ..+.+|||||+..++.+..+|...+ ..+..+||+|.+.+|..+
T Consensus 235 ltl~gikq~~i~v~k~~-k~~~l~dl~~~-------~~q~~if~nt~r~v~~l~~~L~~~~-~~~s~~~~d~~q~~R~~~ 305 (397)
T KOG0327|consen 235 LTLEGIKQFYINVEKEE-KLDTLCDLYRR-------VTQAVIFCNTRRKVDNLTDKLRAHG-FTVSAIHGDMEQNERDTL 305 (397)
T ss_pred hhhhheeeeeeeccccc-cccHHHHHHHh-------hhcceEEecchhhHHHHHHHHhhCC-ceEEEeecccchhhhhHH
Confidence 44678999999999998 99999999985 3689999999999999999998887 899999999999999999
Q ss_pred HHHHhcccccccccccccCCCCCcCCCCCCceeEEEEeCCCCCcCcCCCCCCCCCEEEEecCCCChHHHHHhhccc--cC
Q 028124 97 LEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTC--LA 174 (213)
Q Consensus 97 l~~Fr~g~~~~~~~~~~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~rGld~~~v~~VI~yd~P~~~~~yi~R~GR~--~~ 174 (213)
+++|++|+ +++||+|+. ++||+|+.+++.|||||+|...++|+||+||+ .|
T Consensus 306 ~~ef~~gs-----------------------srvlIttdl----~argidv~~~slvinydlP~~~~~yihR~gr~gr~g 358 (397)
T KOG0327|consen 306 MREFRSGS-----------------------SRVLITTDL----LARGIDVQQVSLVVNYDLPARKENYIHRIGRAGRFG 358 (397)
T ss_pred HHHhhcCC-----------------------ceEEeeccc----cccccchhhcceeeeeccccchhhhhhhcccccccC
Confidence 99999996 999999999 99999999999999999999999999999996 68
Q ss_pred CCCeEEEEEeCchhHHHHHHHHHhcccccccCccccccC
Q 028124 175 ADGSVINIVVGGEVVTLRSMEESLGLIVAEVPINISEIL 213 (213)
Q Consensus 175 ~~g~~i~~~~~~e~~~~~~le~~l~~~~~~~~~~~~~~~ 213 (213)
++|.++++++..+...++++|++++..++|+|.++.+++
T Consensus 359 rkg~~in~v~~~d~~~lk~ie~~y~~~i~e~p~~~~~l~ 397 (397)
T KOG0327|consen 359 RKGVAINFVTEEDVRDLKDIEKFYNTPIEELPSNFADLL 397 (397)
T ss_pred CCceeeeeehHhhHHHHHhHHHhcCCcceecccchhhcC
Confidence 999999999999999999999999999999999998875
No 13
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=99.95 E-value=6.2e-27 Score=213.52 Aligned_cols=155 Identities=18% Similarity=0.321 Sum_probs=140.8
Q ss_pred CCCCCceEEEEEecCcchHHHHHHHHHHHhhcCCCCCCcEEEEeCchHHHHHHHHHHhccCCceEEEecCCCCHHHHHHH
Q 028124 17 SHFSQPRHFYVAVDRLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLI 96 (213)
Q Consensus 17 ~~~~~i~~~~~~~~~~~~K~~~L~~ll~~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~lhg~~~~~~R~~~ 96 (213)
....++.|+|..++..+.|.+.|..+++. ....++||||+++.+++.++..|...+ +.+..+||+|++.+|..+
T Consensus 214 ~~~~~i~~~~~~~~~~~~k~~~l~~l~~~-----~~~~~~lVF~~s~~~~~~l~~~L~~~~-~~~~~l~g~~~~~~R~~~ 287 (434)
T PRK11192 214 RERKKIHQWYYRADDLEHKTALLCHLLKQ-----PEVTRSIVFVRTRERVHELAGWLRKAG-INCCYLEGEMVQAKRNEA 287 (434)
T ss_pred ccccCceEEEEEeCCHHHHHHHHHHHHhc-----CCCCeEEEEeCChHHHHHHHHHHHhCC-CCEEEecCCCCHHHHHHH
Confidence 44567899999888777799999998875 456799999999999999999999887 899999999999999999
Q ss_pred HHHHhcccccccccccccCCCCCcCCCCCCceeEEEEeCCCCCcCcCCCCCCCCCEEEEecCCCChHHHHHhhccc--cC
Q 028124 97 LEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTC--LA 174 (213)
Q Consensus 97 l~~Fr~g~~~~~~~~~~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~rGld~~~v~~VI~yd~P~~~~~yi~R~GR~--~~ 174 (213)
+++|++|+ +++|||||+ ++||+|+|++++|||||+|.+.+.|+||+||+ .|
T Consensus 288 l~~f~~G~-----------------------~~vLVaTd~----~~~GiDip~v~~VI~~d~p~s~~~yiqr~GR~gR~g 340 (434)
T PRK11192 288 IKRLTDGR-----------------------VNVLVATDV----AARGIDIDDVSHVINFDMPRSADTYLHRIGRTGRAG 340 (434)
T ss_pred HHHHhCCC-----------------------CcEEEEccc----cccCccCCCCCEEEEECCCCCHHHHhhcccccccCC
Confidence 99999985 999999999 99999999999999999999999999999997 56
Q ss_pred CCCeEEEEEeCchhHHHHHHHHHhcccccc
Q 028124 175 ADGSVINIVVGGEVVTLRSMEESLGLIVAE 204 (213)
Q Consensus 175 ~~g~~i~~~~~~e~~~~~~le~~l~~~~~~ 204 (213)
+.|.+++|+...|...+.++++++...+.+
T Consensus 341 ~~g~ai~l~~~~d~~~~~~i~~~~~~~~~~ 370 (434)
T PRK11192 341 RKGTAISLVEAHDHLLLGKIERYIEEPLKA 370 (434)
T ss_pred CCceEEEEecHHHHHHHHHHHHHHhccccc
Confidence 779999999999999999999988776644
No 14
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=99.95 E-value=5.1e-27 Score=215.91 Aligned_cols=154 Identities=22% Similarity=0.320 Sum_probs=139.1
Q ss_pred CCCCceEEEEEecCcchHHHHHHHHHHHhhcCCCCCCcEEEEeCchHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHH
Q 028124 18 HFSQPRHFYVAVDRLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLIL 97 (213)
Q Consensus 18 ~~~~i~~~~~~~~~~~~K~~~L~~ll~~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~lhg~~~~~~R~~~l 97 (213)
...++.+++..++... |.+.|..++.. ....++||||+++..++.+++.|...+ +.+..+||+|++.+|.+++
T Consensus 216 ~~~~i~~~~~~~~~~~-k~~~l~~l~~~-----~~~~~~lVF~~t~~~~~~l~~~L~~~g-~~~~~lhg~~~~~~R~~~l 288 (456)
T PRK10590 216 ASEQVTQHVHFVDKKR-KRELLSQMIGK-----GNWQQVLVFTRTKHGANHLAEQLNKDG-IRSAAIHGNKSQGARTRAL 288 (456)
T ss_pred cccceeEEEEEcCHHH-HHHHHHHHHHc-----CCCCcEEEEcCcHHHHHHHHHHHHHCC-CCEEEEECCCCHHHHHHHH
Confidence 3456888888877665 88888887765 456799999999999999999999887 8999999999999999999
Q ss_pred HHHhcccccccccccccCCCCCcCCCCCCceeEEEEeCCCCCcCcCCCCCCCCCEEEEecCCCChHHHHHhhccc--cCC
Q 028124 98 EEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTC--LAA 175 (213)
Q Consensus 98 ~~Fr~g~~~~~~~~~~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~rGld~~~v~~VI~yd~P~~~~~yi~R~GR~--~~~ 175 (213)
++|++|. +++|||||+ ++||+|+|++++|||||+|.++++|+||+||+ .|.
T Consensus 289 ~~F~~g~-----------------------~~iLVaTdv----~~rGiDip~v~~VI~~~~P~~~~~yvqR~GRaGR~g~ 341 (456)
T PRK10590 289 ADFKSGD-----------------------IRVLVATDI----AARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAA 341 (456)
T ss_pred HHHHcCC-----------------------CcEEEEccH----HhcCCCcccCCEEEEeCCCCCHHHhhhhccccccCCC
Confidence 9999985 999999999 99999999999999999999999999999997 467
Q ss_pred CCeEEEEEeCchhHHHHHHHHHhccccccc
Q 028124 176 DGSVINIVVGGEVVTLRSMEESLGLIVAEV 205 (213)
Q Consensus 176 ~g~~i~~~~~~e~~~~~~le~~l~~~~~~~ 205 (213)
.|.+++|+...|...++.+++.++.+++..
T Consensus 342 ~G~ai~l~~~~d~~~~~~ie~~l~~~~~~~ 371 (456)
T PRK10590 342 TGEALSLVCVDEHKLLRDIEKLLKKEIPRI 371 (456)
T ss_pred CeeEEEEecHHHHHHHHHHHHHhcCCCccc
Confidence 799999999999999999999998887543
No 15
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.95 E-value=5.9e-27 Score=221.07 Aligned_cols=157 Identities=19% Similarity=0.321 Sum_probs=140.6
Q ss_pred CCCCceEEEEEecCcchHHHHHHHHHHHhhcCCCCCCcEEEEeCchHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHH
Q 028124 18 HFSQPRHFYVAVDRLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLIL 97 (213)
Q Consensus 18 ~~~~i~~~~~~~~~~~~K~~~L~~ll~~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~lhg~~~~~~R~~~l 97 (213)
....++|.++.....+ |+..|..++.. ....++|||||+++.++.|++.|...+ +.+..+||+|++.+|..++
T Consensus 228 ~~~~i~q~~~~~~~~~-k~~~L~~ll~~-----~~~~k~LVF~nt~~~ae~l~~~L~~~g-~~v~~lhg~l~~~eR~~il 300 (572)
T PRK04537 228 TAARVRQRIYFPADEE-KQTLLLGLLSR-----SEGARTMVFVNTKAFVERVARTLERHG-YRVGVLSGDVPQKKRESLL 300 (572)
T ss_pred cccceeEEEEecCHHH-HHHHHHHHHhc-----ccCCcEEEEeCCHHHHHHHHHHHHHcC-CCEEEEeCCCCHHHHHHHH
Confidence 4456788887766655 99998888876 456899999999999999999999987 8999999999999999999
Q ss_pred HHHhcccccccccccccCCCCCcCCCCCCceeEEEEeCCCCCcCcCCCCCCCCCEEEEecCCCChHHHHHhhccc--cCC
Q 028124 98 EEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTC--LAA 175 (213)
Q Consensus 98 ~~Fr~g~~~~~~~~~~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~rGld~~~v~~VI~yd~P~~~~~yi~R~GR~--~~~ 175 (213)
++|++|+ .+||||||+ ++||+|++++++|||||+|.+.++|+||+||+ .|+
T Consensus 301 ~~Fr~G~-----------------------~~VLVaTdv----~arGIDip~V~~VInyd~P~s~~~yvqRiGRaGR~G~ 353 (572)
T PRK04537 301 NRFQKGQ-----------------------LEILVATDV----AARGLHIDGVKYVYNYDLPFDAEDYVHRIGRTARLGE 353 (572)
T ss_pred HHHHcCC-----------------------CeEEEEehh----hhcCCCccCCCEEEEcCCCCCHHHHhhhhcccccCCC
Confidence 9999985 999999999 99999999999999999999999999999997 567
Q ss_pred CCeEEEEEeCchhHHHHHHHHHhcccccccCcc
Q 028124 176 DGSVINIVVGGEVVTLRSMEESLGLIVAEVPIN 208 (213)
Q Consensus 176 ~g~~i~~~~~~e~~~~~~le~~l~~~~~~~~~~ 208 (213)
.|.+|+|+.+.+...+..+++.++.++...+++
T Consensus 354 ~G~ai~~~~~~~~~~l~~i~~~~~~~~~~~~~~ 386 (572)
T PRK04537 354 EGDAISFACERYAMSLPDIEAYIEQKIPVEPVT 386 (572)
T ss_pred CceEEEEecHHHHHHHHHHHHHHcCCCCccccC
Confidence 899999999999999999999998887655443
No 16
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=99.95 E-value=8.7e-27 Score=221.84 Aligned_cols=160 Identities=21% Similarity=0.325 Sum_probs=145.6
Q ss_pred CCCCCceEEEEEecCcchHHHHHHHHHHHhhcCCCCCCcEEEEeCchHHHHHHHHHHhccCCceEEEecCCCCHHHHHHH
Q 028124 17 SHFSQPRHFYVAVDRLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLI 96 (213)
Q Consensus 17 ~~~~~i~~~~~~~~~~~~K~~~L~~ll~~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~lhg~~~~~~R~~~ 96 (213)
.....+.|.|+.+...+ |.+.|..+|.. ....++||||+|+..++.|++.|...+ +.+..+||+|++.+|.++
T Consensus 215 ~~~~~i~q~~~~v~~~~-k~~~L~~~L~~-----~~~~~~IVF~~tk~~a~~l~~~L~~~g-~~~~~lhgd~~q~~R~~i 287 (629)
T PRK11634 215 TTRPDISQSYWTVWGMR-KNEALVRFLEA-----EDFDAAIIFVRTKNATLEVAEALERNG-YNSAALNGDMNQALREQT 287 (629)
T ss_pred ccCCceEEEEEEechhh-HHHHHHHHHHh-----cCCCCEEEEeccHHHHHHHHHHHHhCC-CCEEEeeCCCCHHHHHHH
Confidence 34567889998888766 99999999876 345799999999999999999999987 899999999999999999
Q ss_pred HHHHhcccccccccccccCCCCCcCCCCCCceeEEEEeCCCCCcCcCCCCCCCCCEEEEecCCCChHHHHHhhccc--cC
Q 028124 97 LEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTC--LA 174 (213)
Q Consensus 97 l~~Fr~g~~~~~~~~~~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~rGld~~~v~~VI~yd~P~~~~~yi~R~GR~--~~ 174 (213)
+++|++|. +++|||||+ ++||+|+|++++|||||+|.++++|+||+||+ .|
T Consensus 288 l~~Fr~G~-----------------------~~ILVATdv----~arGIDip~V~~VI~~d~P~~~e~yvqRiGRtGRaG 340 (629)
T PRK11634 288 LERLKDGR-----------------------LDILIATDV----AARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAG 340 (629)
T ss_pred HHHHhCCC-----------------------CCEEEEcch----HhcCCCcccCCEEEEeCCCCCHHHHHHHhccccCCC
Confidence 99999985 999999999 99999999999999999999999999999997 56
Q ss_pred CCCeEEEEEeCchhHHHHHHHHHhcccccccCcccc
Q 028124 175 ADGSVINIVVGGEVVTLRSMEESLGLIVAEVPINIS 210 (213)
Q Consensus 175 ~~g~~i~~~~~~e~~~~~~le~~l~~~~~~~~~~~~ 210 (213)
+.|.+++|+.+.|...++.+++.++..+++++++-.
T Consensus 341 r~G~ai~~v~~~e~~~l~~ie~~~~~~i~~~~~p~~ 376 (629)
T PRK11634 341 RAGRALLFVENRERRLLRNIERTMKLTIPEVELPNA 376 (629)
T ss_pred CcceEEEEechHHHHHHHHHHHHhCCCcceecCCcH
Confidence 789999999999999999999999999988776644
No 17
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.94 E-value=3.1e-26 Score=211.54 Aligned_cols=151 Identities=23% Similarity=0.336 Sum_probs=136.9
Q ss_pred CCCceEEEEEecCcchHHHHHHHHHHHhhcCCCCCCcEEEEeCchHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHH
Q 028124 19 FSQPRHFYVAVDRLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILE 98 (213)
Q Consensus 19 ~~~i~~~~~~~~~~~~K~~~L~~ll~~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~lhg~~~~~~R~~~l~ 98 (213)
..++.+++..+...+ |...|.+++.. ....++||||+++++++.+++.|...+ +.+..+||++++++|.++++
T Consensus 307 ~~~~~~~~~~~~~~~-k~~~l~~ll~~-----~~~~~~IVF~~s~~~~~~l~~~L~~~~-~~~~~~~g~~~~~~R~~~~~ 379 (475)
T PRK01297 307 SDTVEQHVYAVAGSD-KYKLLYNLVTQ-----NPWERVMVFANRKDEVRRIEERLVKDG-INAAQLSGDVPQHKRIKTLE 379 (475)
T ss_pred CCcccEEEEEecchh-HHHHHHHHHHh-----cCCCeEEEEeCCHHHHHHHHHHHHHcC-CCEEEEECCCCHHHHHHHHH
Confidence 345777777777665 99999888876 456799999999999999999999887 89999999999999999999
Q ss_pred HHhcccccccccccccCCCCCcCCCCCCceeEEEEeCCCCCcCcCCCCCCCCCEEEEecCCCChHHHHHhhccc--cCCC
Q 028124 99 EFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTC--LAAD 176 (213)
Q Consensus 99 ~Fr~g~~~~~~~~~~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~rGld~~~v~~VI~yd~P~~~~~yi~R~GR~--~~~~ 176 (213)
+|++|+ +++||||++ +++|+|++++++|||||+|.+..+|+||+||+ .|+.
T Consensus 380 ~Fr~G~-----------------------~~vLvaT~~----l~~GIDi~~v~~VI~~~~P~s~~~y~Qr~GRaGR~g~~ 432 (475)
T PRK01297 380 GFREGK-----------------------IRVLVATDV----AGRGIHIDGISHVINFTLPEDPDDYVHRIGRTGRAGAS 432 (475)
T ss_pred HHhCCC-----------------------CcEEEEccc----cccCCcccCCCEEEEeCCCCCHHHHHHhhCccCCCCCC
Confidence 999985 999999999 99999999999999999999999999999997 4667
Q ss_pred CeEEEEEeCchhHHHHHHHHHhccccc
Q 028124 177 GSVINIVVGGEVVTLRSMEESLGLIVA 203 (213)
Q Consensus 177 g~~i~~~~~~e~~~~~~le~~l~~~~~ 203 (213)
|.+++|+..+|...+..+++.++.++.
T Consensus 433 g~~i~~~~~~d~~~~~~~~~~~~~~~~ 459 (475)
T PRK01297 433 GVSISFAGEDDAFQLPEIEELLGRKIS 459 (475)
T ss_pred ceEEEEecHHHHHHHHHHHHHhCCCCc
Confidence 999999999999999999999998874
No 18
>PTZ00424 helicase 45; Provisional
Probab=99.94 E-value=2.2e-26 Score=206.97 Aligned_cols=163 Identities=28% Similarity=0.567 Sum_probs=147.7
Q ss_pred CCCCceEEEEEecCcchHHHHHHHHHHHhhcCCCCCCcEEEEeCchHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHH
Q 028124 18 HFSQPRHFYVAVDRLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLIL 97 (213)
Q Consensus 18 ~~~~i~~~~~~~~~~~~K~~~L~~ll~~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~lhg~~~~~~R~~~l 97 (213)
...+++++|+.++....+...+.++++. ....++||||+++..++.+++.|...+ +.+..+||+|++++|..++
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~~~ivF~~t~~~~~~l~~~l~~~~-~~~~~~h~~~~~~~R~~i~ 310 (401)
T PTZ00424 237 TLEGIRQFYVAVEKEEWKFDTLCDLYET-----LTITQAIIYCNTRRKVDYLTKKMHERD-FTVSCMHGDMDQKDRDLIM 310 (401)
T ss_pred ccCCceEEEEecChHHHHHHHHHHHHHh-----cCCCeEEEEecCcHHHHHHHHHHHHCC-CcEEEEeCCCCHHHHHHHH
Confidence 4567889998888777788888888776 345789999999999999999999886 7999999999999999999
Q ss_pred HHHhcccccccccccccCCCCCcCCCCCCceeEEEEeCCCCCcCcCCCCCCCCCEEEEecCCCChHHHHHhhccc--cCC
Q 028124 98 EEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTC--LAA 175 (213)
Q Consensus 98 ~~Fr~g~~~~~~~~~~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~rGld~~~v~~VI~yd~P~~~~~yi~R~GR~--~~~ 175 (213)
++|++|. +++||||++ +++|+|+|++++||+||+|.+..+|+||+||+ .|+
T Consensus 311 ~~f~~g~-----------------------~~vLvaT~~----l~~GiDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~ 363 (401)
T PTZ00424 311 REFRSGS-----------------------TRVLITTDL----LARGIDVQQVSLVINYDLPASPENYIHRIGRSGRFGR 363 (401)
T ss_pred HHHHcCC-----------------------CCEEEEccc----ccCCcCcccCCEEEEECCCCCHHHEeecccccccCCC
Confidence 9999985 999999999 99999999999999999999999999999997 467
Q ss_pred CCeEEEEEeCchhHHHHHHHHHhcccccccCccccccC
Q 028124 176 DGSVINIVVGGEVVTLRSMEESLGLIVAEVPINISEIL 213 (213)
Q Consensus 176 ~g~~i~~~~~~e~~~~~~le~~l~~~~~~~~~~~~~~~ 213 (213)
.|.|+.|+++.+...+..+++.++..+++.++..-+.|
T Consensus 364 ~G~~i~l~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~ 401 (401)
T PTZ00424 364 KGVAINFVTPDDIEQLKEIERHYNTQIEEMPMEVADYL 401 (401)
T ss_pred CceEEEEEcHHHHHHHHHHHHHHCCcccccCcchhhcC
Confidence 89999999999999999999999999999988776543
No 19
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=99.94 E-value=4.6e-26 Score=212.78 Aligned_cols=161 Identities=20% Similarity=0.307 Sum_probs=139.5
Q ss_pred CCCceEEEEEecCcchHHHHHHHHHHHhhcCCCCCCcEEEEeCchHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHH
Q 028124 19 FSQPRHFYVAVDRLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILE 98 (213)
Q Consensus 19 ~~~i~~~~~~~~~~~~K~~~L~~ll~~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~lhg~~~~~~R~~~l~ 98 (213)
...++|.+..+...+ |...|.+++.... ....++||||+++..++.+++.|....++.+..+||+|++.+|..+++
T Consensus 337 ~~~v~q~~~~~~~~~-k~~~l~~~l~~~~---~~~~~~iVFv~s~~~a~~l~~~L~~~~g~~~~~~Hg~~~~~eR~~il~ 412 (518)
T PLN00206 337 NKAVKQLAIWVETKQ-KKQKLFDILKSKQ---HFKPPAVVFVSSRLGADLLANAITVVTGLKALSIHGEKSMKERREVMK 412 (518)
T ss_pred CcceeEEEEeccchh-HHHHHHHHHHhhc---ccCCCEEEEcCCchhHHHHHHHHhhccCcceEEeeCCCCHHHHHHHHH
Confidence 345788888887766 8888888887521 234689999999999999999997642389999999999999999999
Q ss_pred HHhcccccccccccccCCCCCcCCCCCCceeEEEEeCCCCCcCcCCCCCCCCCEEEEecCCCChHHHHHhhccc--cCCC
Q 028124 99 EFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTC--LAAD 176 (213)
Q Consensus 99 ~Fr~g~~~~~~~~~~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~rGld~~~v~~VI~yd~P~~~~~yi~R~GR~--~~~~ 176 (213)
+|++|+ .++||||++ ++||+|+|++++|||||+|.+.++|+||+||+ .|..
T Consensus 413 ~Fr~G~-----------------------~~ILVaTdv----l~rGiDip~v~~VI~~d~P~s~~~yihRiGRaGR~g~~ 465 (518)
T PLN00206 413 SFLVGE-----------------------VPVIVATGV----LGRGVDLLRVRQVIIFDMPNTIKEYIHQIGRASRMGEK 465 (518)
T ss_pred HHHCCC-----------------------CCEEEEecH----hhccCCcccCCEEEEeCCCCCHHHHHHhccccccCCCC
Confidence 999985 999999999 99999999999999999999999999999997 4578
Q ss_pred CeEEEEEeCchhHHHHHHHHHhcccccccCcccc
Q 028124 177 GSVINIVVGGEVVTLRSMEESLGLIVAEVPINIS 210 (213)
Q Consensus 177 g~~i~~~~~~e~~~~~~le~~l~~~~~~~~~~~~ 210 (213)
|.+++|++.++...+..+.+.+...-.++|-.+.
T Consensus 466 G~ai~f~~~~~~~~~~~l~~~l~~~~~~vp~~l~ 499 (518)
T PLN00206 466 GTAIVFVNEEDRNLFPELVALLKSSGAAIPRELA 499 (518)
T ss_pred eEEEEEEchhHHHHHHHHHHHHHHcCCCCCHHHH
Confidence 9999999999999999999888877777775543
No 20
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=99.93 E-value=7.9e-26 Score=204.26 Aligned_cols=167 Identities=17% Similarity=0.216 Sum_probs=147.9
Q ss_pred CCCCCCCCCCCCCCceEEEEEecCcchHHHHHHHHHHHhhcCCCCCCcEEEEeCchHHHHHHHHHHhccCCceEEEecCC
Q 028124 8 SPCPPCQSPSHFSQPRHFYVAVDRLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSD 87 (213)
Q Consensus 8 ~~~~~~~~~~~~~~i~~~~~~~~~~~~K~~~L~~ll~~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~lhg~ 87 (213)
-.|.....+.+...+.|-|+.++.+. ++-.|..+|++. ....++||||.|+..+..+++.|.... +.+..+||+
T Consensus 290 v~~~d~~~~~The~l~Qgyvv~~~~~-~f~ll~~~LKk~----~~~~KiiVF~sT~~~vk~~~~lL~~~d-lpv~eiHgk 363 (543)
T KOG0342|consen 290 VNVDDGGERETHERLEQGYVVAPSDS-RFSLLYTFLKKN----IKRYKIIVFFSTCMSVKFHAELLNYID-LPVLEIHGK 363 (543)
T ss_pred eecCCCCCcchhhcccceEEeccccc-hHHHHHHHHHHh----cCCceEEEEechhhHHHHHHHHHhhcC-CchhhhhcC
Confidence 34555667888899999999999887 799999999883 334899999999999999999999875 899999999
Q ss_pred CCHHHHHHHHHHHhcccccccccccccCCCCCcCCCCCCceeEEEEeCCCCCcCcCCCCCCCCCEEEEecCCCChHHHHH
Q 028124 88 LAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIR 167 (213)
Q Consensus 88 ~~~~~R~~~l~~Fr~g~~~~~~~~~~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~rGld~~~v~~VI~yd~P~~~~~yi~ 167 (213)
+++..|..+..+|++.+ .-||||||+ ++||+|+|+|++||.||+|.++++|||
T Consensus 364 ~~Q~kRT~~~~~F~kae-----------------------sgIL~cTDV----aARGlD~P~V~~VvQ~~~P~d~~~YIH 416 (543)
T KOG0342|consen 364 QKQNKRTSTFFEFCKAE-----------------------SGILVCTDV----AARGLDIPDVDWVVQYDPPSDPEQYIH 416 (543)
T ss_pred CcccccchHHHHHhhcc-----------------------cceEEecch----hhccCCCCCceEEEEeCCCCCHHHHHH
Confidence 99999999999999975 889999999 999999999999999999999999999
Q ss_pred hhccc--cCCCCeEEEEEeCchhHHHHHHHHHhcccccccCcccc
Q 028124 168 RMTTC--LAADGSVINIVVGGEVVTLRSMEESLGLIVAEVPINIS 210 (213)
Q Consensus 168 R~GR~--~~~~g~~i~~~~~~e~~~~~~le~~l~~~~~~~~~~~~ 210 (213)
|+||+ .|..|.++.|..+.|...++.+. ...+.+.+++..
T Consensus 417 RvGRTaR~gk~G~alL~l~p~El~Flr~LK---~lpl~~~e~~~~ 458 (543)
T KOG0342|consen 417 RVGRTAREGKEGKALLLLAPWELGFLRYLK---KLPLEEFEFPPL 458 (543)
T ss_pred HhccccccCCCceEEEEeChhHHHHHHHHh---hCCCcccCCCCC
Confidence 99997 46679999999999999999998 455666665543
No 21
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.93 E-value=6.9e-26 Score=203.86 Aligned_cols=170 Identities=16% Similarity=0.254 Sum_probs=146.0
Q ss_pred CCCCCCCCCCCCCC----CCCCCceEEEEEecCcchHHHHHHHHHHHhhcCCCCCCcEEEEeCchHHHHHHHHHHhcc-C
Q 028124 3 IDGVESPCPPCQSP----SHFSQPRHFYVAVDRLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNL-A 77 (213)
Q Consensus 3 ~~~~~~~~~~~~~~----~~~~~i~~~~~~~~~~~~K~~~L~~ll~~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~-~ 77 (213)
.-|+++|.+++... .+|+.+..+|..|...+ |+..|.++|.. ...+++|||.+|+..+++....|... +
T Consensus 207 raGLRNpv~V~V~~k~~~~tPS~L~~~Y~v~~a~e-K~~~lv~~L~~-----~~~kK~iVFF~TCasVeYf~~~~~~~l~ 280 (567)
T KOG0345|consen 207 RAGLRNPVRVSVKEKSKSATPSSLALEYLVCEADE-KLSQLVHLLNN-----NKDKKCIVFFPTCASVEYFGKLFSRLLK 280 (567)
T ss_pred HhhccCceeeeecccccccCchhhcceeeEecHHH-HHHHHHHHHhc-----cccccEEEEecCcchHHHHHHHHHHHhC
Confidence 34778877765522 37888999999999988 99999999987 56789999999999999999999875 5
Q ss_pred CceEEEecCCCCHHHHHHHHHHHhcccccccccccccCCCCCcCCCCCCceeEEEEeCCCCCcCcCCCCCCCCCEEEEec
Q 028124 78 DISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYE 157 (213)
Q Consensus 78 ~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~~~~~~~~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~rGld~~~v~~VI~yd 157 (213)
.+.+..+||.|++..|.++++.|+.. +..+|+|||+ ++||+|+|++++||+||
T Consensus 281 ~~~i~~iHGK~~q~~R~k~~~~F~~~-----------------------~~~vl~~TDV----aARGlDip~iD~VvQ~D 333 (567)
T KOG0345|consen 281 KREIFSIHGKMSQKARAKVLEAFRKL-----------------------SNGVLFCTDV----AARGLDIPGIDLVVQFD 333 (567)
T ss_pred CCcEEEecchhcchhHHHHHHHHHhc-----------------------cCceEEeehh----hhccCCCCCceEEEecC
Confidence 58899999999999999999999995 3779999999 99999999999999999
Q ss_pred CCCChHHHHHhhccc--cCCCCeEEEEEeCchhHHHHHHHHHhccccccc
Q 028124 158 LPTKKETYIRRMTTC--LAADGSVINIVVGGEVVTLRSMEESLGLIVAEV 205 (213)
Q Consensus 158 ~P~~~~~yi~R~GR~--~~~~g~~i~~~~~~e~~~~~~le~~l~~~~~~~ 205 (213)
+|.+++.|+||+||+ .|+.|.+|.|+.+.|..+..-|.-.-...++++
T Consensus 334 pP~~~~~FvHR~GRTaR~gr~G~Aivfl~p~E~aYveFl~i~~~v~le~~ 383 (567)
T KOG0345|consen 334 PPKDPSSFVHRCGRTARAGREGNAIVFLNPREEAYVEFLRIKGKVELERI 383 (567)
T ss_pred CCCChhHHHhhcchhhhccCccceEEEecccHHHHHHHHHhcCccchhhh
Confidence 999999999999996 688999999999988777666654433444443
No 22
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.93 E-value=1.3e-25 Score=199.88 Aligned_cols=159 Identities=21% Similarity=0.275 Sum_probs=141.4
Q ss_pred CCCCceEEEEEecCcchHHHHHHHHHHHhhcCCCCCCcEEEEeCchHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHH
Q 028124 18 HFSQPRHFYVAVDRLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLIL 97 (213)
Q Consensus 18 ~~~~i~~~~~~~~~~~~K~~~L~~ll~~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~lhg~~~~~~R~~~l 97 (213)
.-.+++|.+ .+..+..|++....+++. ..+..++||||..+..|+.|..-|.-.| +.+-.|||+-.+.+|...+
T Consensus 435 a~~sVkQ~i-~v~~d~~k~~~~~~f~~~----ms~ndKvIiFv~~K~~AD~LSSd~~l~g-i~~q~lHG~r~Q~DrE~al 508 (629)
T KOG0336|consen 435 AVKSVKQNI-IVTTDSEKLEIVQFFVAN----MSSNDKVIIFVSRKVMADHLSSDFCLKG-ISSQSLHGNREQSDREMAL 508 (629)
T ss_pred eeeeeeeeE-EecccHHHHHHHHHHHHh----cCCCceEEEEEechhhhhhccchhhhcc-cchhhccCChhhhhHHHHH
Confidence 345788988 455555599888888777 5678999999999999999999998777 8999999999999999999
Q ss_pred HHHhcccccccccccccCCCCCcCCCCCCceeEEEEeCCCCCcCcCCCCCCCCCEEEEecCCCChHHHHHhhccc--cCC
Q 028124 98 EEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTC--LAA 175 (213)
Q Consensus 98 ~~Fr~g~~~~~~~~~~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~rGld~~~v~~VI~yd~P~~~~~yi~R~GR~--~~~ 175 (213)
+.|++|+ ++|||+||+ ++||+|++++.+|+|||||.+++.|+||+||+ +|+
T Consensus 509 ~~~ksG~-----------------------vrILvaTDl----aSRGlDv~DiTHV~NyDFP~nIeeYVHRvGrtGRaGr 561 (629)
T KOG0336|consen 509 EDFKSGE-----------------------VRILVATDL----ASRGLDVPDITHVYNYDFPRNIEEYVHRVGRTGRAGR 561 (629)
T ss_pred HhhhcCc-----------------------eEEEEEech----hhcCCCchhcceeeccCCCccHHHHHHHhcccccCCC
Confidence 9999996 999999999 99999999999999999999999999999996 688
Q ss_pred CCeEEEEEeCchhHHHHHHHHHhcccccccCccc
Q 028124 176 DGSVINIVVGGEVVTLRSMEESLGLIVAEVPINI 209 (213)
Q Consensus 176 ~g~~i~~~~~~e~~~~~~le~~l~~~~~~~~~~~ 209 (213)
.|.+++|++.+|-....+|-+.|...-+++|-.+
T Consensus 562 ~G~sis~lt~~D~~~a~eLI~ILe~aeQevPdeL 595 (629)
T KOG0336|consen 562 TGTSISFLTRNDWSMAEELIQILERAEQEVPDEL 595 (629)
T ss_pred CcceEEEEehhhHHHHHHHHHHHHHhhhhCcHHH
Confidence 8999999999999999988888877777777544
No 23
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.93 E-value=3.9e-25 Score=201.13 Aligned_cols=163 Identities=20% Similarity=0.303 Sum_probs=142.9
Q ss_pred CCCCCCceEEEEEecCcchHHHHHHHHHHHhhc----CCCCCCcEEEEeCchHHHHHHHHHHhccCCceEEEecCCCCHH
Q 028124 16 PSHFSQPRHFYVAVDRLQFKMETLVELLHLVVA----GRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAET 91 (213)
Q Consensus 16 ~~~~~~i~~~~~~~~~~~~K~~~L~~ll~~~~~----~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~lhg~~~~~ 91 (213)
-.+..++.|....|.+.+ |...|.++|....+ +.....+++|||.+++.|+.|+..|...+ +.+..+||+-++.
T Consensus 297 g~~~~ni~q~i~~V~~~~-kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~~-~~~~sIhg~~tq~ 374 (482)
T KOG0335|consen 297 GSTSENITQKILFVNEME-KRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLSSNG-YPAKSIHGDRTQI 374 (482)
T ss_pred ccccccceeEeeeecchh-hHHHHHHHhhcccCCcccCCcccceEEEEeeccchhhHHHHHHhcCC-CCceeecchhhhh
Confidence 356788999999999887 99999999975332 12223589999999999999999999987 8999999999999
Q ss_pred HHHHHHHHHhcccccccccccccCCCCCcCCCCCCceeEEEEeCCCCCcCcCCCCCCCCCEEEEecCCCChHHHHHhhcc
Q 028124 92 ERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTT 171 (213)
Q Consensus 92 ~R~~~l~~Fr~g~~~~~~~~~~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~rGld~~~v~~VI~yd~P~~~~~yi~R~GR 171 (213)
+|.+.++.|+.|. ..+||||++ ++||+|+++|++|||||+|.+.++|+|||||
T Consensus 375 er~~al~~Fr~g~-----------------------~pvlVaT~V----aaRGlDi~~V~hVInyDmP~d~d~YvHRIGR 427 (482)
T KOG0335|consen 375 EREQALNDFRNGK-----------------------APVLVATNV----AARGLDIPNVKHVINYDMPADIDDYVHRIGR 427 (482)
T ss_pred HHHHHHHHhhcCC-----------------------cceEEEehh----hhcCCCCCCCceeEEeecCcchhhHHHhccc
Confidence 9999999999984 999999999 9999999999999999999999999999999
Q ss_pred c--cCCCCeEEEEEeCchhHHHHHHHHHhcccccccCc
Q 028124 172 C--LAADGSVINIVVGGEVVTLRSMEESLGLIVAEVPI 207 (213)
Q Consensus 172 ~--~~~~g~~i~~~~~~e~~~~~~le~~l~~~~~~~~~ 207 (213)
+ +|+.|.+++|+...+....+.|.+.+.-.-+++|-
T Consensus 428 TGR~Gn~G~atsf~n~~~~~i~~~L~~~l~ea~q~vP~ 465 (482)
T KOG0335|consen 428 TGRVGNGGRATSFFNEKNQNIAKALVEILTEANQEVPQ 465 (482)
T ss_pred cccCCCCceeEEEeccccchhHHHHHHHHHHhcccCcH
Confidence 7 68889999999988888888888877655555553
No 24
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=99.93 E-value=4.4e-25 Score=201.87 Aligned_cols=161 Identities=19% Similarity=0.296 Sum_probs=141.7
Q ss_pred CCCCCCCceEEEEEecCcchHHHHHHHHHHHhhcCCCCCCcEEEEeCchHHHHHHHHHHhcc-CCceEEEecCCCCHHHH
Q 028124 15 SPSHFSQPRHFYVAVDRLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNL-ADISFSSLHSDLAETER 93 (213)
Q Consensus 15 ~~~~~~~i~~~~~~~~~~~~K~~~L~~ll~~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~-~~~~~~~lhg~~~~~~R 93 (213)
..++|++++|+|+.++-.+ |+..|.-+++. ....+.|||+.|++.+..+++.+.+. +++.+..|||.|++..|
T Consensus 281 ~~atP~~L~Q~y~~v~l~~-Ki~~L~sFI~s-----hlk~K~iVF~SscKqvkf~~e~F~rlrpg~~l~~L~G~~~Q~~R 354 (758)
T KOG0343|consen 281 VAATPSNLQQSYVIVPLED-KIDMLWSFIKS-----HLKKKSIVFLSSCKQVKFLYEAFCRLRPGIPLLALHGTMSQKKR 354 (758)
T ss_pred cccChhhhhheEEEEehhh-HHHHHHHHHHh-----ccccceEEEEehhhHHHHHHHHHHhcCCCCceeeeccchhHHHH
Confidence 3678999999999999887 99999999988 45689999999999999999999865 45899999999999999
Q ss_pred HHHHHHHhcccccccccccccCCCCCcCCCCCCceeEEEEeCCCCCcCcCCCCCCCCCEEEEecCCCChHHHHHhhcccc
Q 028124 94 TLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCL 173 (213)
Q Consensus 94 ~~~l~~Fr~g~~~~~~~~~~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~rGld~~~v~~VI~yd~P~~~~~yi~R~GR~~ 173 (213)
..++.+|-.. +.-+|+|||+ ++||+|||.|+|||.||.|.++++||||+||++
T Consensus 355 ~ev~~~F~~~-----------------------~~~vLF~TDv----~aRGLDFpaVdwViQ~DCPedv~tYIHRvGRtA 407 (758)
T KOG0343|consen 355 IEVYKKFVRK-----------------------RAVVLFCTDV----AARGLDFPAVDWVIQVDCPEDVDTYIHRVGRTA 407 (758)
T ss_pred HHHHHHHHHh-----------------------cceEEEeehh----hhccCCCcccceEEEecCchhHHHHHHHhhhhh
Confidence 9999999886 4779999999 999999999999999999999999999999974
Q ss_pred --CCCCeEEEEEeCch-hHHHHHHHHHhcccccccCccc
Q 028124 174 --AADGSVINIVVGGE-VVTLRSMEESLGLIVAEVPINI 209 (213)
Q Consensus 174 --~~~g~~i~~~~~~e-~~~~~~le~~l~~~~~~~~~~~ 209 (213)
...|.++.++++.+ ..++..|++.. +.+.++-++.
T Consensus 408 R~~~~G~sll~L~psEeE~~l~~Lq~k~-I~i~~i~i~~ 445 (758)
T KOG0343|consen 408 RYKERGESLLMLTPSEEEAMLKKLQKKK-IPIKEIKIDP 445 (758)
T ss_pred cccCCCceEEEEcchhHHHHHHHHHHcC-CCHHhhccCH
Confidence 55699999999887 67777777754 5565555443
No 25
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=99.92 E-value=5.7e-25 Score=196.81 Aligned_cols=173 Identities=18% Similarity=0.213 Sum_probs=139.5
Q ss_pred CCCCCCCceEEEEEecCcchHHHHHHHHHHHhhcCCCCCCcEEEEeCchHHHHHHHHHHhccCCceEEEecCCCCHHHHH
Q 028124 15 SPSHFSQPRHFYVAVDRLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERT 94 (213)
Q Consensus 15 ~~~~~~~i~~~~~~~~~~~~K~~~L~~ll~~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~lhg~~~~~~R~ 94 (213)
..+.++++.||++.|... +|+..+..+++. +.-.++.|||+||.+.|.+|.-.|...| ++...++|.||..-|.
T Consensus 235 el~~~dqL~Qy~v~cse~-DKflllyallKL----~LI~gKsliFVNtIdr~YrLkLfLeqFG-iksciLNseLP~NSR~ 308 (569)
T KOG0346|consen 235 ELPNPDQLTQYQVKCSEE-DKFLLLYALLKL----RLIRGKSLIFVNTIDRCYRLKLFLEQFG-IKSCILNSELPANSRC 308 (569)
T ss_pred cCCCcccceEEEEEeccc-hhHHHHHHHHHH----HHhcCceEEEEechhhhHHHHHHHHHhC-cHhhhhcccccccchh
Confidence 345788999999999955 499999999986 2235799999999999999999999998 9999999999999999
Q ss_pred HHHHHHhccccccccccc--c------------cCCCCCcCCCCCCceeEEEEeCCCCCcCcCCCCCCCCCEEEEecCCC
Q 028124 95 LILEEFRHTAMKWNQKVT--E------------QSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPT 160 (213)
Q Consensus 95 ~~l~~Fr~g~~~~~~~~~--~------------~~~~~~~~~~~~~~~~iLV~Td~~~~~~~rGld~~~v~~VI~yd~P~ 160 (213)
.++++|..|.++..-.+- + ..+++.++++.+++ -+-.-.- ++||+||..|.+|||||+|.
T Consensus 309 Hii~QFNkG~YdivIAtD~s~~~~~~eee~kgk~~e~~~kndkkskk--K~D~E~G----VsRGIDF~~V~~VlNFD~P~ 382 (569)
T KOG0346|consen 309 HIIEQFNKGLYDIVIATDDSADGDKLEEEVKGKSDEKNPKNDKKSKK--KLDKESG----VSRGIDFHHVSNVLNFDFPE 382 (569)
T ss_pred hHHHHhhCcceeEEEEccCccchhhhhccccccccccCCCCcccccc--ccCchhc----hhccccchheeeeeecCCCC
Confidence 999999999866544311 1 11122234442332 3444445 79999999999999999999
Q ss_pred ChHHHHHhhccc--cCCCCeEEEEEeCchhHHHHHHHHHhc
Q 028124 161 KKETYIRRMTTC--LAADGSVINIVVGGEVVTLRSMEESLG 199 (213)
Q Consensus 161 ~~~~yi~R~GR~--~~~~g~~i~~~~~~e~~~~~~le~~l~ 199 (213)
+...||||+||+ |+++|.+++||.+.+..-...+|..+.
T Consensus 383 t~~sYIHRvGRTaRg~n~GtalSfv~P~e~~g~~~le~~~~ 423 (569)
T KOG0346|consen 383 TVTSYIHRVGRTARGNNKGTALSFVSPKEEFGKESLESILK 423 (569)
T ss_pred chHHHHHhccccccCCCCCceEEEecchHHhhhhHHHHHHh
Confidence 999999999995 788999999999988876677776654
No 26
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.91 E-value=2.1e-24 Score=195.96 Aligned_cols=159 Identities=19% Similarity=0.307 Sum_probs=138.8
Q ss_pred CCCCCCCCCCC--CCCCCceEEEEEec--CcchHHHHHHHHHHHhhcCCCCCCcEEEEeCchHHHHHHHHHHhccCCceE
Q 028124 6 VESPCPPCQSP--SHFSQPRHFYVAVD--RLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISF 81 (213)
Q Consensus 6 ~~~~~~~~~~~--~~~~~i~~~~~~~~--~~~~K~~~L~~ll~~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~ 81 (213)
++-|..+..-+ .+...++|.|+.+. .+.++-..|..|+..++ ..++|||+.|++.|+++.-.|--.| +++
T Consensus 380 L~kPvrifvd~~~~~a~~LtQEFiRIR~~re~dRea~l~~l~~rtf-----~~~~ivFv~tKk~AHRl~IllGLlg-l~a 453 (691)
T KOG0338|consen 380 LNKPVRIFVDPNKDTAPKLTQEFIRIRPKREGDREAMLASLITRTF-----QDRTIVFVRTKKQAHRLRILLGLLG-LKA 453 (691)
T ss_pred cCCCeEEEeCCccccchhhhHHHheeccccccccHHHHHHHHHHhc-----ccceEEEEehHHHHHHHHHHHHHhh-chh
Confidence 45555555544 34567899998765 34458888889988743 5899999999999999987777777 899
Q ss_pred EEecCCCCHHHHHHHHHHHhcccccccccccccCCCCCcCCCCCCceeEEEEeCCCCCcCcCCCCCCCCCEEEEecCCCC
Q 028124 82 SSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTK 161 (213)
Q Consensus 82 ~~lhg~~~~~~R~~~l~~Fr~g~~~~~~~~~~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~rGld~~~v~~VI~yd~P~~ 161 (213)
.-+||.+++++|...|++|+.++ +++|||||+ ++||+|++.|.+||||++|.+
T Consensus 454 gElHGsLtQ~QRlesL~kFk~~e-----------------------idvLiaTDv----AsRGLDI~gV~tVINy~mP~t 506 (691)
T KOG0338|consen 454 GELHGSLTQEQRLESLEKFKKEE-----------------------IDVLIATDV----ASRGLDIEGVQTVINYAMPKT 506 (691)
T ss_pred hhhcccccHHHHHHHHHHHHhcc-----------------------CCEEEEech----hhccCCccceeEEEeccCchh
Confidence 99999999999999999999986 999999999 999999999999999999999
Q ss_pred hHHHHHhhccc--cCCCCeEEEEEeCchhHHHHHHHHH
Q 028124 162 KETYIRRMTTC--LAADGSVINIVVGGEVVTLRSMEES 197 (213)
Q Consensus 162 ~~~yi~R~GR~--~~~~g~~i~~~~~~e~~~~~~le~~ 197 (213)
.+.|+||+||+ +|+.|.+++|+...|...++.+-+.
T Consensus 507 ~e~Y~HRVGRTARAGRaGrsVtlvgE~dRkllK~iik~ 544 (691)
T KOG0338|consen 507 IEHYLHRVGRTARAGRAGRSVTLVGESDRKLLKEIIKS 544 (691)
T ss_pred HHHHHHHhhhhhhcccCcceEEEeccccHHHHHHHHhh
Confidence 99999999995 8999999999999999999988776
No 27
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.91 E-value=2.9e-23 Score=191.80 Aligned_cols=129 Identities=22% Similarity=0.357 Sum_probs=114.7
Q ss_pred HHHHHHHHHHHhhcCCCCCCcEEEEeCchHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhccccccccccccc
Q 028124 35 KMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQ 114 (213)
Q Consensus 35 K~~~L~~ll~~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~~~~~~~~~ 114 (213)
+++.+.+++.. ..+++++||||++++.++.++..|...| +.+..+||+|++++|..++++|++|.
T Consensus 212 ~~~~l~~~l~~----~~~~~~~IIF~~s~~~~e~la~~L~~~g-~~~~~~H~~l~~~eR~~i~~~F~~g~---------- 276 (470)
T TIGR00614 212 ILEDLLRFIRK----EFKGKSGIIYCPSRKKSEQVTASLQNLG-IAAGAYHAGLEISARDDVHHKFQRDE---------- 276 (470)
T ss_pred HHHHHHHHHHH----hcCCCceEEEECcHHHHHHHHHHHHhcC-CCeeEeeCCCCHHHHHHHHHHHHcCC----------
Confidence 55666666653 2456778999999999999999999987 89999999999999999999999985
Q ss_pred CCCCCcCCCCCCceeEEEEeCCCCCcCcCCCCCCCCCEEEEecCCCChHHHHHhhccc--cCCCCeEEEEEeCchhHHHH
Q 028124 115 SGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTC--LAADGSVINIVVGGEVVTLR 192 (213)
Q Consensus 115 ~~~~~~~~~~~~~~~iLV~Td~~~~~~~rGld~~~v~~VI~yd~P~~~~~yi~R~GR~--~~~~g~~i~~~~~~e~~~~~ 192 (213)
+++||||++ +++|+|+|++++||||++|.+.+.|+||+||+ .|..|.|+.|+.+.|...++
T Consensus 277 -------------~~vLVaT~~----~~~GID~p~V~~VI~~~~P~s~~~y~Qr~GRaGR~G~~~~~~~~~~~~d~~~~~ 339 (470)
T TIGR00614 277 -------------IQVVVATVA----FGMGINKPDVRFVIHYSLPKSMESYYQESGRAGRDGLPSECHLFYAPADINRLR 339 (470)
T ss_pred -------------CcEEEEech----hhccCCcccceEEEEeCCCCCHHHHHhhhcCcCCCCCCceEEEEechhHHHHHH
Confidence 999999999 99999999999999999999999999999997 56779999999988877666
Q ss_pred HHH
Q 028124 193 SME 195 (213)
Q Consensus 193 ~le 195 (213)
.+.
T Consensus 340 ~~~ 342 (470)
T TIGR00614 340 RLL 342 (470)
T ss_pred HHH
Confidence 654
No 28
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=99.90 E-value=4.8e-23 Score=202.86 Aligned_cols=145 Identities=15% Similarity=0.225 Sum_probs=120.5
Q ss_pred CCCCCceEEEEEecCcchHHHHHHHHHHHhhcCCCCCCcEEEEeCchHHHHHHHHHHhccCCceEEEecCCCCHHHHHHH
Q 028124 17 SHFSQPRHFYVAVDRLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLI 96 (213)
Q Consensus 17 ~~~~~i~~~~~~~~~~~~K~~~L~~ll~~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~lhg~~~~~~R~~~ 96 (213)
..++++ +|..++.....+..|.+++.. .....+.||||++++.|+.++..|...| +.+..+||+|++++|..+
T Consensus 650 f~RpNL--~y~Vv~k~kk~le~L~~~I~~----~~~~esgIIYC~SRke~E~LAe~L~~~G-ika~~YHAGLs~eeR~~v 722 (1195)
T PLN03137 650 FNRPNL--WYSVVPKTKKCLEDIDKFIKE----NHFDECGIIYCLSRMDCEKVAERLQEFG-HKAAFYHGSMDPAQRAFV 722 (1195)
T ss_pred cCccce--EEEEeccchhHHHHHHHHHHh----cccCCCceeEeCchhHHHHHHHHHHHCC-CCeeeeeCCCCHHHHHHH
Confidence 344454 344444433234556666654 2345689999999999999999999988 899999999999999999
Q ss_pred HHHHhcccccccccccccCCCCCcCCCCCCceeEEEEeCCCCCcCcCCCCCCCCCEEEEecCCCChHHHHHhhccc--cC
Q 028124 97 LEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTC--LA 174 (213)
Q Consensus 97 l~~Fr~g~~~~~~~~~~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~rGld~~~v~~VI~yd~P~~~~~yi~R~GR~--~~ 174 (213)
+++|+.|+ ++|||||++ +++|||+|+|++|||||+|.+++.|+||+||+ .|
T Consensus 723 qe~F~~Ge-----------------------i~VLVATdA----FGMGIDkPDVR~VIHydlPkSiEsYyQriGRAGRDG 775 (1195)
T PLN03137 723 QKQWSKDE-----------------------INIICATVA----FGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDG 775 (1195)
T ss_pred HHHHhcCC-----------------------CcEEEEech----hhcCCCccCCcEEEEcCCCCCHHHHHhhhcccCCCC
Confidence 99999985 999999999 99999999999999999999999999999997 46
Q ss_pred CCCeEEEEEeCchhHHHHHHH
Q 028124 175 ADGSVINIVVGGEVVTLRSME 195 (213)
Q Consensus 175 ~~g~~i~~~~~~e~~~~~~le 195 (213)
..|.|+.|+...|...++.+.
T Consensus 776 ~~g~cILlys~~D~~~~~~lI 796 (1195)
T PLN03137 776 QRSSCVLYYSYSDYIRVKHMI 796 (1195)
T ss_pred CCceEEEEecHHHHHHHHHHH
Confidence 779999999887776666554
No 29
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.90 E-value=2.4e-23 Score=191.41 Aligned_cols=157 Identities=20% Similarity=0.313 Sum_probs=139.9
Q ss_pred CCCCceEEEEEecCcchHHHHHHHHHHHhhcCCCCCCcEEEEeCchHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHH
Q 028124 18 HFSQPRHFYVAVDRLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLIL 97 (213)
Q Consensus 18 ~~~~i~~~~~~~~~~~~K~~~L~~ll~~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~lhg~~~~~~R~~~l 97 (213)
....|.|..+++....-|+-.+++++... -..+++||+.+.++|..|++.|....++.+.++||+.++.+|...+
T Consensus 357 a~~~V~QelvF~gse~~K~lA~rq~v~~g-----~~PP~lIfVQs~eRak~L~~~L~~~~~i~v~vIh~e~~~~qrde~~ 431 (593)
T KOG0344|consen 357 ANETVDQELVFCGSEKGKLLALRQLVASG-----FKPPVLIFVQSKERAKQLFEELEIYDNINVDVIHGERSQKQRDETM 431 (593)
T ss_pred HhhhhhhhheeeecchhHHHHHHHHHhcc-----CCCCeEEEEecHHHHHHHHHHhhhccCcceeeEecccchhHHHHHH
Confidence 35678999999998888999999999883 3479999999999999999999544459999999999999999999
Q ss_pred HHHhcccccccccccccCCCCCcCCCCCCceeEEEEeCCCCCcCcCCCCCCCCCEEEEecCCCChHHHHHhhccc--cCC
Q 028124 98 EEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTC--LAA 175 (213)
Q Consensus 98 ~~Fr~g~~~~~~~~~~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~rGld~~~v~~VI~yd~P~~~~~yi~R~GR~--~~~ 175 (213)
++||.|+ +.+||||++ ++||+|+.++++|||||+|.+.-+|+||+||+ +|+
T Consensus 432 ~~FR~g~-----------------------IwvLicTdl----l~RGiDf~gvn~VInyD~p~s~~syihrIGRtgRag~ 484 (593)
T KOG0344|consen 432 ERFRIGK-----------------------IWVLICTDL----LARGIDFKGVNLVINYDFPQSDLSYIHRIGRTGRAGR 484 (593)
T ss_pred HHHhccC-----------------------eeEEEehhh----hhccccccCcceEEecCCCchhHHHHHHhhccCCCCC
Confidence 9999995 999999999 99999999999999999999999999999995 788
Q ss_pred CCeEEEEEeCchhHHHHHHHHHhcccccccC
Q 028124 176 DGSVINIVVGGEVVTLRSMEESLGLIVAEVP 206 (213)
Q Consensus 176 ~g~~i~~~~~~e~~~~~~le~~l~~~~~~~~ 206 (213)
.|.+|+|++..+...++.+.+.+...--++|
T Consensus 485 ~g~Aitfytd~d~~~ir~iae~~~~sG~evp 515 (593)
T KOG0344|consen 485 SGKAITFYTDQDMPRIRSIAEVMEQSGCEVP 515 (593)
T ss_pred CcceEEEeccccchhhhhHHHHHHHcCCcch
Confidence 9999999999998888888777654444444
No 30
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=99.90 E-value=1e-22 Score=193.47 Aligned_cols=127 Identities=18% Similarity=0.345 Sum_probs=113.6
Q ss_pred HHHHHHHHHHHhhcCCCCCCcEEEEeCchHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhccccccccccccc
Q 028124 35 KMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQ 114 (213)
Q Consensus 35 K~~~L~~ll~~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~~~~~~~~~ 114 (213)
+...|..++.. ..+.++||||+|+++|+.++..|...+ +.+..+||+|++++|.+++++|+.|.
T Consensus 223 ~~~~l~~~l~~-----~~~~~~IIFc~tr~~~e~la~~L~~~g-~~v~~~Ha~l~~~~R~~i~~~F~~g~---------- 286 (607)
T PRK11057 223 PLDQLMRYVQE-----QRGKSGIIYCNSRAKVEDTAARLQSRG-ISAAAYHAGLDNDVRADVQEAFQRDD---------- 286 (607)
T ss_pred hHHHHHHHHHh-----cCCCCEEEEECcHHHHHHHHHHHHhCC-CCEEEecCCCCHHHHHHHHHHHHCCC----------
Confidence 55666666654 456899999999999999999999987 89999999999999999999999985
Q ss_pred CCCCCcCCCCCCceeEEEEeCCCCCcCcCCCCCCCCCEEEEecCCCChHHHHHhhccc--cCCCCeEEEEEeCchhHHHH
Q 028124 115 SGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTC--LAADGSVINIVVGGEVVTLR 192 (213)
Q Consensus 115 ~~~~~~~~~~~~~~~iLV~Td~~~~~~~rGld~~~v~~VI~yd~P~~~~~yi~R~GR~--~~~~g~~i~~~~~~e~~~~~ 192 (213)
+++||||++ +++|+|+|+|++|||||+|.+.++|+||+||+ .|.+|.|+.|+.+.|...++
T Consensus 287 -------------~~VLVaT~a----~~~GIDip~V~~VI~~d~P~s~~~y~Qr~GRaGR~G~~~~~ill~~~~d~~~~~ 349 (607)
T PRK11057 287 -------------LQIVVATVA----FGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLR 349 (607)
T ss_pred -------------CCEEEEech----hhccCCCCCcCEEEEeCCCCCHHHHHHHhhhccCCCCCceEEEEeCHHHHHHHH
Confidence 999999999 99999999999999999999999999999997 45678999999988876655
Q ss_pred HH
Q 028124 193 SM 194 (213)
Q Consensus 193 ~l 194 (213)
.+
T Consensus 350 ~~ 351 (607)
T PRK11057 350 RC 351 (607)
T ss_pred HH
Confidence 44
No 31
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=99.89 E-value=7.3e-23 Score=198.22 Aligned_cols=140 Identities=13% Similarity=0.132 Sum_probs=120.1
Q ss_pred HHHHHHHHHHHhhcCCCCCCcEEEEeCchHHHHHHHHHHhcc--------CCceEEEecCCCCHHHHHHHHHHHhccccc
Q 028124 35 KMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNL--------ADISFSSLHSDLAETERTLILEEFRHTAMK 106 (213)
Q Consensus 35 K~~~L~~ll~~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~--------~~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~ 106 (213)
+.+.|.++++. +.++||||||++.|+.++..|+.. + ..+..+||++++++|.+++++|++|.
T Consensus 260 ~~~~l~~l~~~-------~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~-~~v~~~hgg~~~~eR~~ie~~f~~G~-- 329 (742)
T TIGR03817 260 AADLLADLVAE-------GARTLTFVRSRRGAELVAAIARRLLGEVDPDLA-ERVAAYRAGYLPEDRRELERALRDGE-- 329 (742)
T ss_pred HHHHHHHHHHC-------CCCEEEEcCCHHHHHHHHHHHHHHHHhhccccc-cchhheecCCCHHHHHHHHHHHHcCC--
Confidence 55555555543 579999999999999999998753 3 57889999999999999999999985
Q ss_pred ccccccccCCCCCcCCCCCCceeEEEEeCCCCCcCcCCCCCCCCCEEEEecCCCChHHHHHhhcccc--CCCCeEEEEEe
Q 028124 107 WNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCL--AADGSVINIVV 184 (213)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~rGld~~~v~~VI~yd~P~~~~~yi~R~GR~~--~~~g~~i~~~~ 184 (213)
+++|||||+ ++||+|++++++|||||+|.+.++|+||+||+| |+.|.+++++.
T Consensus 330 ---------------------i~vLVaTd~----lerGIDI~~vd~VI~~~~P~s~~~y~qRiGRaGR~G~~g~ai~v~~ 384 (742)
T TIGR03817 330 ---------------------LLGVATTNA----LELGVDISGLDAVVIAGFPGTRASLWQQAGRAGRRGQGALVVLVAR 384 (742)
T ss_pred ---------------------ceEEEECch----HhccCCcccccEEEEeCCCCCHHHHHHhccccCCCCCCcEEEEEeC
Confidence 999999999 999999999999999999999999999999974 56799999886
Q ss_pred --CchhHHHHHHHHHhcccccccCccc
Q 028124 185 --GGEVVTLRSMEESLGLIVAEVPINI 209 (213)
Q Consensus 185 --~~e~~~~~~le~~l~~~~~~~~~~~ 209 (213)
+.|...+..+++.++..+++..++.
T Consensus 385 ~~~~d~~~~~~~~~~~~~~~e~~~~~~ 411 (742)
T TIGR03817 385 DDPLDTYLVHHPEALFDRPVEATVFDP 411 (742)
T ss_pred CChHHHHHHhCHHHHhcCCCccceeCC
Confidence 4577788888989888877655443
No 32
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.89 E-value=4.8e-23 Score=187.14 Aligned_cols=163 Identities=15% Similarity=0.223 Sum_probs=147.5
Q ss_pred CCCCceEEEEEecCcchHHHHHHHHHHHhhcCCCCCCcEEEEeCchHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHH
Q 028124 18 HFSQPRHFYVAVDRLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLIL 97 (213)
Q Consensus 18 ~~~~i~~~~~~~~~~~~K~~~L~~ll~~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~lhg~~~~~~R~~~l 97 (213)
...+|.|.+..+++...|+.+|..-|.. ....+++|||+..+..++.++..|+-.+ +.+..+||+|.+.+|.++|
T Consensus 437 an~dITQ~V~V~~s~~~Kl~wl~~~L~~----f~S~gkvlifVTKk~~~e~i~a~Lklk~-~~v~llhgdkdqa~rn~~l 511 (731)
T KOG0339|consen 437 ANEDITQTVSVCPSEEKKLNWLLRHLVE----FSSEGKVLIFVTKKADAEEIAANLKLKG-FNVSLLHGDKDQAERNEVL 511 (731)
T ss_pred cccchhheeeeccCcHHHHHHHHHHhhh----hccCCcEEEEEeccCCHHHHHHHhcccc-ceeeeecCchhhHHHHHHH
Confidence 4467999999999999999999888766 2457899999999999999999999887 8999999999999999999
Q ss_pred HHHhcccccccccccccCCCCCcCCCCCCceeEEEEeCCCCCcCcCCCCCCCCCEEEEecCCCChHHHHHhhccc--cCC
Q 028124 98 EEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTC--LAA 175 (213)
Q Consensus 98 ~~Fr~g~~~~~~~~~~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~rGld~~~v~~VI~yd~P~~~~~yi~R~GR~--~~~ 175 (213)
.+|+.+. ..|||+||+ ++||+|++++..|||||+.+++++|.||+||+ .|.
T Consensus 512 s~fKkk~-----------------------~~VlvatDv----aargldI~~ikTVvnyD~ardIdththrigrtgRag~ 564 (731)
T KOG0339|consen 512 SKFKKKR-----------------------KPVLVATDV----AARGLDIPSIKTVVNYDFARDIDTHTHRIGRTGRAGE 564 (731)
T ss_pred HHHhhcC-----------------------CceEEEeeH----hhcCCCccccceeecccccchhHHHHHHhhhcccccc
Confidence 9999984 999999999 99999999999999999999999999999996 567
Q ss_pred CCeEEEEEeCchhHHHHHHHHHhcccccccCcccccc
Q 028124 176 DGSVINIVVGGEVVTLRSMEESLGLIVAEVPINISEI 212 (213)
Q Consensus 176 ~g~~i~~~~~~e~~~~~~le~~l~~~~~~~~~~~~~~ 212 (213)
.|++++++++.|......|.+.|.---+.+|-.+.+|
T Consensus 565 kGvayTlvTeKDa~fAG~LVnnLe~agQnVP~~l~dl 601 (731)
T KOG0339|consen 565 KGVAYTLVTEKDAEFAGHLVNNLEGAGQNVPDELMDL 601 (731)
T ss_pred cceeeEEechhhHHHhhHHHHHHhhccccCChHHHHH
Confidence 7999999999999999999998877777777666543
No 33
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.89 E-value=9.8e-23 Score=185.98 Aligned_cols=157 Identities=22% Similarity=0.305 Sum_probs=135.9
Q ss_pred CCCCCCCceEEEEEecCcchHHHHHHHHHHHhhcCCCCCCcEEEEeCchHHHHHHHHHHhcc---------------C--
Q 028124 15 SPSHFSQPRHFYVAVDRLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNL---------------A-- 77 (213)
Q Consensus 15 ~~~~~~~i~~~~~~~~~~~~K~~~L~~ll~~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~---------------~-- 77 (213)
+...|+++.|.|..|+..- ++-.|..+|..... ....+++|||+.+.+.++.-+..|... |
T Consensus 389 ~~~iPeqL~qry~vVPpKL-RLV~Laa~L~~~~k-~~~~qk~iVF~S~~d~VeFHy~lf~~~l~~~~e~~s~~~~s~g~~ 466 (708)
T KOG0348|consen 389 SFAIPEQLLQRYTVVPPKL-RLVALAALLLNKVK-FEEKQKMIVFFSCSDSVEFHYSLFSEALLSHLEGSSGAPDSEGLP 466 (708)
T ss_pred cccCcHHhhhceEecCCch-hHHHHHHHHHHHhh-hhhhceeEEEEechhHHHHHHHHHHhhhhcccccccCCcccCCCh
Confidence 3577899999999999876 88888888876554 344579999999999999887777532 0
Q ss_pred ----CceEEEecCCCCHHHHHHHHHHHhcccccccccccccCCCCCcCCCCCCceeEEEEeCCCCCcCcCCCCCCCCCEE
Q 028124 78 ----DISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVL 153 (213)
Q Consensus 78 ----~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~~~~~~~~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~rGld~~~v~~V 153 (213)
+.++.-|||+|++++|..+++.|+... ..||+|||+ ++||+|+|+|++|
T Consensus 467 ~l~~~~k~~rLHGsm~QeeRts~f~~Fs~~~-----------------------~~VLLcTDV----AaRGLDlP~V~~v 519 (708)
T KOG0348|consen 467 PLFMDLKFYRLHGSMEQEERTSVFQEFSHSR-----------------------RAVLLCTDV----AARGLDLPHVGLV 519 (708)
T ss_pred hhhhcceEEEecCchhHHHHHHHHHhhcccc-----------------------ceEEEehhh----hhccCCCCCcCeE
Confidence 256889999999999999999999964 669999999 9999999999999
Q ss_pred EEecCCCChHHHHHhhccc--cCCCCeEEEEEeCchhHHHHHHHHHhcc
Q 028124 154 INYELPTKKETYIRRMTTC--LAADGSVINIVVGGEVVTLRSMEESLGL 200 (213)
Q Consensus 154 I~yd~P~~~~~yi~R~GR~--~~~~g~~i~~~~~~e~~~~~~le~~l~~ 200 (213)
|.||.|.++++|+||+||+ .|..|.++.|..+.|.++++.++.....
T Consensus 520 VQYd~P~s~adylHRvGRTARaG~kG~alLfL~P~Eaey~~~l~~~~~~ 568 (708)
T KOG0348|consen 520 VQYDPPFSTADYLHRVGRTARAGEKGEALLFLLPSEAEYVNYLKKHHIM 568 (708)
T ss_pred EEeCCCCCHHHHHHHhhhhhhccCCCceEEEecccHHHHHHHHHhhcch
Confidence 9999999999999999995 7889999999999999988888876544
No 34
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=99.89 E-value=7.7e-24 Score=187.55 Aligned_cols=143 Identities=20% Similarity=0.323 Sum_probs=125.4
Q ss_pred CceEEEEEecCcchHHHHHHHHHHHhhcCCCCCCcEEEEeCchHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHH
Q 028124 21 QPRHFYVAVDRLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEF 100 (213)
Q Consensus 21 ~i~~~~~~~~~~~~K~~~L~~ll~~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~lhg~~~~~~R~~~l~~F 100 (213)
++.|.+.++..+. |+--|.+.|.. ...+++|||..+..++.+.++|.-.| +.++.+||+-++++|...++.|
T Consensus 396 dViQevEyVkqEa-KiVylLeCLQK------T~PpVLIFaEkK~DVD~IhEYLLlKG-VEavaIHGGKDQedR~~ai~af 467 (610)
T KOG0341|consen 396 DVIQEVEYVKQEA-KIVYLLECLQK------TSPPVLIFAEKKADVDDIHEYLLLKG-VEAVAIHGGKDQEDRHYAIEAF 467 (610)
T ss_pred hHHHHHHHHHhhh-hhhhHHHHhcc------CCCceEEEeccccChHHHHHHHHHcc-ceeEEeecCcchhHHHHHHHHH
Confidence 4566666777766 88888888876 45799999999999999999999888 9999999999999999999999
Q ss_pred hcccccccccccccCCCCCcCCCCCCceeEEEEeCCCCCcCcCCCCCCCCCEEEEecCCCChHHHHHhhccc--cCCCCe
Q 028124 101 RHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTC--LAADGS 178 (213)
Q Consensus 101 r~g~~~~~~~~~~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~rGld~~~v~~VI~yd~P~~~~~yi~R~GR~--~~~~g~ 178 (213)
|.| +.++||+||+ ++.|+|||++.+|||||+|..++.|+||+||+ .|+.|.
T Consensus 468 r~g-----------------------kKDVLVATDV----ASKGLDFp~iqHVINyDMP~eIENYVHRIGRTGRsg~~Gi 520 (610)
T KOG0341|consen 468 RAG-----------------------KKDVLVATDV----ASKGLDFPDIQHVINYDMPEEIENYVHRIGRTGRSGKTGI 520 (610)
T ss_pred hcC-----------------------CCceEEEecc----hhccCCCccchhhccCCChHHHHHHHHHhcccCCCCCcce
Confidence 998 4999999999 99999999999999999999999999999997 577799
Q ss_pred EEEEEeCc-hhHHHHHHHHHh
Q 028124 179 VINIVVGG-EVVTLRSMEESL 198 (213)
Q Consensus 179 ~i~~~~~~-e~~~~~~le~~l 198 (213)
+.+|++.. +...+-.+..++
T Consensus 521 ATTfINK~~~esvLlDLK~LL 541 (610)
T KOG0341|consen 521 ATTFINKNQEESVLLDLKHLL 541 (610)
T ss_pred eeeeecccchHHHHHHHHHHH
Confidence 99999876 444555555554
No 35
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.89 E-value=6.8e-23 Score=185.75 Aligned_cols=152 Identities=19% Similarity=0.250 Sum_probs=136.0
Q ss_pred CCCCCCceEEEEEecCcchHHHHHHHHHHHhhcCCCCCCcEEEEeCchHHHHHHHHHHh-cc--CCceEEEecCCCCHHH
Q 028124 16 PSHFSQPRHFYVAVDRLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVS-NL--ADISFSSLHSDLAETE 92 (213)
Q Consensus 16 ~~~~~~i~~~~~~~~~~~~K~~~L~~ll~~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~-~~--~~~~~~~lhg~~~~~~ 92 (213)
.+.+..+.|.++.++... |.-.+..+++. .+..++|+|+++.+.+.+++..|+ .. .++++..+.|.++.+.
T Consensus 398 yslp~~l~~~~vv~~~~~-kpl~~~~lI~~-----~k~~r~lcf~~S~~sa~Rl~~~L~v~~~~~~~~~s~~t~~l~~k~ 471 (620)
T KOG0350|consen 398 YSLPSSLSHRLVVTEPKF-KPLAVYALITS-----NKLNRTLCFVNSVSSANRLAHVLKVEFCSDNFKVSEFTGQLNGKR 471 (620)
T ss_pred eecChhhhhceeeccccc-chHhHHHHHHH-----hhcceEEEEecchHHHHHHHHHHHHHhccccchhhhhhhhhhHHH
Confidence 356678899999888876 88888999987 578999999999999999999998 22 3467888999999999
Q ss_pred HHHHHHHHhcccccccccccccCCCCCcCCCCCCceeEEEEeCCCCCcCcCCCCCCCCCEEEEecCCCChHHHHHhhccc
Q 028124 93 RTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTC 172 (213)
Q Consensus 93 R~~~l~~Fr~g~~~~~~~~~~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~rGld~~~v~~VI~yd~P~~~~~yi~R~GR~ 172 (213)
|.+.+++|+.|. +++|||+|+ ++||+|+.+++.|||||+|.+..+|+||+||+
T Consensus 472 r~k~l~~f~~g~-----------------------i~vLIcSD~----laRGiDv~~v~~VINYd~P~~~ktyVHR~GRT 524 (620)
T KOG0350|consen 472 RYKMLEKFAKGD-----------------------INVLICSDA----LARGIDVNDVDNVINYDPPASDKTYVHRAGRT 524 (620)
T ss_pred HHHHHHHHhcCC-----------------------ceEEEehhh----hhcCCcccccceEeecCCCchhhHHHHhhccc
Confidence 999999999985 999999999 99999999999999999999999999999995
Q ss_pred --cCCCCeEEEEEeCchhHHHHHHHHHhcc
Q 028124 173 --LAADGSVINIVVGGEVVTLRSMEESLGL 200 (213)
Q Consensus 173 --~~~~g~~i~~~~~~e~~~~~~le~~l~~ 200 (213)
+|+.|.|++++...+...|-++-+..+.
T Consensus 525 ARAgq~G~a~tll~~~~~r~F~klL~~~~~ 554 (620)
T KOG0350|consen 525 ARAGQDGYAITLLDKHEKRLFSKLLKKTNL 554 (620)
T ss_pred ccccCCceEEEeeccccchHHHHHHHHhcc
Confidence 7899999999999998888888776654
No 36
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=99.88 E-value=1.4e-21 Score=185.03 Aligned_cols=128 Identities=21% Similarity=0.323 Sum_probs=114.6
Q ss_pred hHHHHHHHHHHHhhcCCCCCCcEEEEeCchHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhcccccccccccc
Q 028124 34 FKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTE 113 (213)
Q Consensus 34 ~K~~~L~~ll~~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~~~~~~~~ 113 (213)
.+.+.+.+++.. ..+.++||||+|++.++.+++.|...+ +.+..+||+|+.++|..++++|++|.
T Consensus 210 ~~~~~l~~~l~~-----~~~~~~IIf~~sr~~~e~la~~L~~~g-~~~~~~H~~l~~~~R~~i~~~F~~g~--------- 274 (591)
T TIGR01389 210 NKQKFLLDYLKK-----HRGQSGIIYASSRKKVEELAERLESQG-ISALAYHAGLSNKVRAENQEDFLYDD--------- 274 (591)
T ss_pred CHHHHHHHHHHh-----cCCCCEEEEECcHHHHHHHHHHHHhCC-CCEEEEECCCCHHHHHHHHHHHHcCC---------
Confidence 377888888776 346799999999999999999999887 89999999999999999999999985
Q ss_pred cCCCCCcCCCCCCceeEEEEeCCCCCcCcCCCCCCCCCEEEEecCCCChHHHHHhhcccc--CCCCeEEEEEeCchhHHH
Q 028124 114 QSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCL--AADGSVINIVVGGEVVTL 191 (213)
Q Consensus 114 ~~~~~~~~~~~~~~~~iLV~Td~~~~~~~rGld~~~v~~VI~yd~P~~~~~yi~R~GR~~--~~~g~~i~~~~~~e~~~~ 191 (213)
+++||||++ +++|+|+|++++|||||+|.+.+.|+||+||+| |..|.|+.++.+.|...+
T Consensus 275 --------------~~vlVaT~a----~~~GID~p~v~~VI~~~~p~s~~~y~Q~~GRaGR~G~~~~~il~~~~~d~~~~ 336 (591)
T TIGR01389 275 --------------VKVMVATNA----FGMGIDKPNVRFVIHYDMPGNLESYYQEAGRAGRDGLPAEAILLYSPADIALL 336 (591)
T ss_pred --------------CcEEEEech----hhccCcCCCCCEEEEcCCCCCHHHHhhhhccccCCCCCceEEEecCHHHHHHH
Confidence 999999999 999999999999999999999999999999974 667899999888776555
Q ss_pred HHH
Q 028124 192 RSM 194 (213)
Q Consensus 192 ~~l 194 (213)
+.+
T Consensus 337 ~~~ 339 (591)
T TIGR01389 337 KRR 339 (591)
T ss_pred HHH
Confidence 544
No 37
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=99.86 E-value=1.9e-21 Score=188.12 Aligned_cols=156 Identities=19% Similarity=0.324 Sum_probs=140.8
Q ss_pred CCceEEEEEecCcchHHHHHHHHHHHhhcCCCCCCcEEEEeCchHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHH
Q 028124 20 SQPRHFYVAVDRLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEE 99 (213)
Q Consensus 20 ~~i~~~~~~~~~~~~K~~~L~~ll~~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~lhg~~~~~~R~~~l~~ 99 (213)
..+.|.+..++.++.|+..|.+||.. .....++||||.++..|+.+.+.|.+.| +.+..+||+.++.+|..+++.
T Consensus 584 k~V~q~v~V~~~e~eKf~kL~eLl~e----~~e~~~tiiFv~~qe~~d~l~~~L~~ag-~~~~slHGgv~q~dR~sti~d 658 (997)
T KOG0334|consen 584 KEVTQVVRVCAIENEKFLKLLELLGE----RYEDGKTIIFVDKQEKADALLRDLQKAG-YNCDSLHGGVDQHDRSSTIED 658 (997)
T ss_pred ccceEEEEEecCchHHHHHHHHHHHH----HhhcCCEEEEEcCchHHHHHHHHHHhcC-cchhhhcCCCchHHHHhHHHH
Confidence 56889999999666799999999987 3457899999999999999999999887 888889999999999999999
Q ss_pred HhcccccccccccccCCCCCcCCCCCCceeEEEEeCCCCCcCcCCCCCCCCCEEEEecCCCChHHHHHhhccc--cCCCC
Q 028124 100 FRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTC--LAADG 177 (213)
Q Consensus 100 Fr~g~~~~~~~~~~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~rGld~~~v~~VI~yd~P~~~~~yi~R~GR~--~~~~g 177 (213)
|+++. +.+||+|++ ++||+|+.+..+|||||+|...++|+||+||+ .|+.|
T Consensus 659 fK~~~-----------------------~~LLvaTsv----varGLdv~~l~Lvvnyd~pnh~edyvhR~gRTgragrkg 711 (997)
T KOG0334|consen 659 FKNGV-----------------------VNLLVATSV----VARGLDVKELILVVNYDFPNHYEDYVHRVGRTGRAGRKG 711 (997)
T ss_pred HhccC-----------------------ceEEEehhh----hhcccccccceEEEEcccchhHHHHHHHhcccccCCccc
Confidence 99985 999999999 99999999999999999999999999999996 68889
Q ss_pred eEEEEEeCchhHHHHHHHHHhcccccccCc
Q 028124 178 SVINIVVGGEVVTLRSMEESLGLIVAEVPI 207 (213)
Q Consensus 178 ~~i~~~~~~e~~~~~~le~~l~~~~~~~~~ 207 (213)
.|++|+.+.+......|.+.+...=.++|-
T Consensus 712 ~AvtFi~p~q~~~a~dl~~al~~~~~~~P~ 741 (997)
T KOG0334|consen 712 AAVTFITPDQLKYAGDLCKALELSKQPVPK 741 (997)
T ss_pred eeEEEeChHHhhhHHHHHHHHHhccCCCch
Confidence 999999998888888888888555555553
No 38
>KOG4284 consensus DEAD box protein [Transcription]
Probab=99.86 E-value=1.7e-21 Score=181.04 Aligned_cols=145 Identities=17% Similarity=0.365 Sum_probs=127.1
Q ss_pred CCceEEEEEecCc-------chHHHHHHHHHHHhhcCCCCCCcEEEEeCchHHHHHHHHHHhccCCceEEEecCCCCHHH
Q 028124 20 SQPRHFYVAVDRL-------QFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETE 92 (213)
Q Consensus 20 ~~i~~~~~~~~~~-------~~K~~~L~~ll~~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~lhg~~~~~~ 92 (213)
-+|+|||+.+... ..|++.|..+++. .+..+.||||+....|+-++..|+..| +.+.++.|.|++.+
T Consensus 237 ~GikQyv~~~~s~nnsveemrlklq~L~~vf~~-----ipy~QAlVF~~~~sra~~~a~~L~ssG-~d~~~ISgaM~Q~~ 310 (980)
T KOG4284|consen 237 FGIKQYVVAKCSPNNSVEEMRLKLQKLTHVFKS-----IPYVQALVFCDQISRAEPIATHLKSSG-LDVTFISGAMSQKD 310 (980)
T ss_pred echhheeeeccCCcchHHHHHHHHHHHHHHHhh-----CchHHHHhhhhhhhhhhHHHHHhhccC-CCeEEeccccchhH
Confidence 4699999887754 2377777777776 677999999999999999999999998 89999999999999
Q ss_pred HHHHHHHHhcccccccccccccCCCCCcCCCCCCceeEEEEeCCCCCcCcCCCCCCCCCEEEEecCCCChHHHHHhhccc
Q 028124 93 RTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTC 172 (213)
Q Consensus 93 R~~~l~~Fr~g~~~~~~~~~~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~rGld~~~v~~VI~yd~P~~~~~yi~R~GR~ 172 (213)
|..+++++|+.. .+|||+||+ .+||+|-++|++|||.|.|.+-++|.|||||+
T Consensus 311 Rl~a~~~lr~f~-----------------------~rILVsTDL----taRGIDa~~vNLVVNiD~p~d~eTY~HRIGRA 363 (980)
T KOG4284|consen 311 RLLAVDQLRAFR-----------------------VRILVSTDL----TARGIDADNVNLVVNIDAPADEETYFHRIGRA 363 (980)
T ss_pred HHHHHHHhhhce-----------------------EEEEEecch----hhccCCccccceEEecCCCcchHHHHHHhhhc
Confidence 999999999984 999999999 99999999999999999999999999999997
Q ss_pred --cCCCCeEEEEEeCc-hhHHHHHHHHH
Q 028124 173 --LAADGSVINIVVGG-EVVTLRSMEES 197 (213)
Q Consensus 173 --~~~~g~~i~~~~~~-e~~~~~~le~~ 197 (213)
.|..|.+++|+..+ +..-++.|...
T Consensus 364 gRFG~~G~aVT~~~~~~e~~~f~~m~~r 391 (980)
T KOG4284|consen 364 GRFGAHGAAVTLLEDERELKGFTAMAYR 391 (980)
T ss_pred ccccccceeEEEeccchhhhhhHHHHHH
Confidence 58889999999765 43555555333
No 39
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=99.86 E-value=6.2e-22 Score=181.25 Aligned_cols=150 Identities=22% Similarity=0.294 Sum_probs=126.2
Q ss_pred CCCCCceEEEEEecCcchHHHHHHHHHHHhhcCCCCCCcEEEEeCchHHHHHHHHHHhccCCceEEEecCCCCHHHHHHH
Q 028124 17 SHFSQPRHFYVAVDRLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLI 96 (213)
Q Consensus 17 ~~~~~i~~~~~~~~~~~~K~~~L~~ll~~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~lhg~~~~~~R~~~ 96 (213)
.+...+....+.|+-.+ |---|..+|-. -.+++|||||+.+.+.+|+-.|...+ +....||..|.+..|.+.
T Consensus 434 ~ta~~l~Es~I~C~~~e-KD~ylyYfl~r------yPGrTlVF~NsId~vKRLt~~L~~L~-i~p~~LHA~M~QKqRLkn 505 (731)
T KOG0347|consen 434 ATASTLTESLIECPPLE-KDLYLYYFLTR------YPGRTLVFCNSIDCVKRLTVLLNNLD-IPPLPLHASMIQKQRLKN 505 (731)
T ss_pred hHHHHHHHHhhcCCccc-cceeEEEEEee------cCCceEEEechHHHHHHHHHHHhhcC-CCCchhhHHHHHHHHHHh
Confidence 33444555555555444 43333334432 35799999999999999999999997 999999999999999999
Q ss_pred HHHHhcccccccccccccCCCCCcCCCCCCceeEEEEeCCCCCcCcCCCCCCCCCEEEEecCCCChHHHHHhhccc--cC
Q 028124 97 LEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTC--LA 174 (213)
Q Consensus 97 l~~Fr~g~~~~~~~~~~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~rGld~~~v~~VI~yd~P~~~~~yi~R~GR~--~~ 174 (213)
|++|+.. +..+|||||+ ++||+|+|.|.+||||..|++.+-|+||.||+ ++
T Consensus 506 LEkF~~~-----------------------~~~VLiaTDV----AARGLDIp~V~HVIHYqVPrtseiYVHRSGRTARA~ 558 (731)
T KOG0347|consen 506 LEKFKQS-----------------------PSGVLIATDV----AARGLDIPGVQHVIHYQVPRTSEIYVHRSGRTARAN 558 (731)
T ss_pred HHHHhcC-----------------------CCeEEEeehh----hhccCCCCCcceEEEeecCCccceeEeccccccccc
Confidence 9999997 4889999999 99999999999999999999999999999996 67
Q ss_pred CCCeEEEEEeCchhHHHHHHHHHhccc
Q 028124 175 ADGSVINIVVGGEVVTLRSMEESLGLI 201 (213)
Q Consensus 175 ~~g~~i~~~~~~e~~~~~~le~~l~~~ 201 (213)
+.|+.+.+|.+.+...+.+|.+.|...
T Consensus 559 ~~Gvsvml~~P~e~~~~~KL~ktL~k~ 585 (731)
T KOG0347|consen 559 SEGVSVMLCGPQEVGPLKKLCKTLKKK 585 (731)
T ss_pred CCCeEEEEeChHHhHHHHHHHHHHhhc
Confidence 789999999999999999998887643
No 40
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=99.86 E-value=7.1e-21 Score=187.31 Aligned_cols=121 Identities=16% Similarity=0.228 Sum_probs=106.6
Q ss_pred chHHHHHHHHHHHhhcCCCCCCcEEEEeCchHHHHHHHHHHh-ccCCceEEEecCCCCHHHHHHHHHHHhcccccccccc
Q 028124 33 QFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVS-NLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKV 111 (213)
Q Consensus 33 ~~K~~~L~~ll~~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~-~~~~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~~~~~~ 111 (213)
+.|++.|.++|+. ....|+||||+++.+++.|++.|+ ..| +.+..+||+|++.+|.+++++|++++
T Consensus 478 d~Ki~~L~~~L~~-----~~~~KvLVF~~~~~t~~~L~~~L~~~~G-i~~~~ihG~~s~~eR~~~~~~F~~~~------- 544 (956)
T PRK04914 478 DPRVEWLIDFLKS-----HRSEKVLVICAKAATALQLEQALREREG-IRAAVFHEGMSIIERDRAAAYFADEE------- 544 (956)
T ss_pred CHHHHHHHHHHHh-----cCCCeEEEEeCcHHHHHHHHHHHhhccC-eeEEEEECCCCHHHHHHHHHHHhcCC-------
Confidence 4599999999987 346899999999999999999995 456 89999999999999999999999852
Q ss_pred cccCCCCCcCCCCCCceeEEEEeCCCCCcCcCCCCCCCCCEEEEecCCCChHHHHHhhccc--cCCCCeEEEEEe
Q 028124 112 TEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTC--LAADGSVINIVV 184 (213)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~rGld~~~v~~VI~yd~P~~~~~yi~R~GR~--~~~~g~~i~~~~ 184 (213)
+..++||||++ +++|+|++.+++|||||+||+++.|.||+||+ .|+.+.+..++.
T Consensus 545 --------------~~~~VLIsTdv----gseGlNlq~a~~VInfDlP~nP~~~eQRIGR~~RiGQ~~~V~i~~~ 601 (956)
T PRK04914 545 --------------DGAQVLLCSEI----GSEGRNFQFASHLVLFDLPFNPDLLEQRIGRLDRIGQKHDIQIHVP 601 (956)
T ss_pred --------------CCccEEEechh----hccCCCcccccEEEEecCCCCHHHHHHHhcccccCCCCceEEEEEc
Confidence 24899999999 99999999999999999999999999999996 567776555553
No 41
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=99.85 E-value=5.6e-21 Score=178.80 Aligned_cols=150 Identities=18% Similarity=0.247 Sum_probs=126.0
Q ss_pred CCCCCCCCceEEEEEecCcchHHHHHHHHHHHhhcCCCCCCcEEEEeCchHHHHHHHHHHhccCCceEEEecCCCCHHHH
Q 028124 14 QSPSHFSQPRHFYVAVDRLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETER 93 (213)
Q Consensus 14 ~~~~~~~~i~~~~~~~~~~~~K~~~L~~ll~~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~lhg~~~~~~R 93 (213)
.....++||.-..+...+...++.++.+.+ ....+..||||.|++.++.++++|...| +.+..+|++|+.++|
T Consensus 197 ~~sfdRpNi~~~v~~~~~~~~q~~fi~~~~------~~~~~~GIIYc~sRk~~E~ia~~L~~~g-~~a~~YHaGl~~~eR 269 (590)
T COG0514 197 RGSFDRPNLALKVVEKGEPSDQLAFLATVL------PQLSKSGIIYCLTRKKVEELAEWLRKNG-ISAGAYHAGLSNEER 269 (590)
T ss_pred EecCCCchhhhhhhhcccHHHHHHHHHhhc------cccCCCeEEEEeeHHhHHHHHHHHHHCC-CceEEecCCCCHHHH
Confidence 345667777766666554444555444411 2456789999999999999999999997 899999999999999
Q ss_pred HHHHHHHhcccccccccccccCCCCCcCCCCCCceeEEEEeCCCCCcCcCCCCCCCCCEEEEecCCCChHHHHHhhccc-
Q 028124 94 TLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTC- 172 (213)
Q Consensus 94 ~~~l~~Fr~g~~~~~~~~~~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~rGld~~~v~~VI~yd~P~~~~~yi~R~GR~- 172 (213)
..+-++|.+++ ++++|||.+ +++|||-|||++|||||+|.|+++|+|-+||+
T Consensus 270 ~~~q~~f~~~~-----------------------~~iiVAT~A----FGMGIdKpdVRfViH~~lP~s~EsYyQE~GRAG 322 (590)
T COG0514 270 ERVQQAFLNDE-----------------------IKVMVATNA----FGMGIDKPDVRFVIHYDLPGSIESYYQETGRAG 322 (590)
T ss_pred HHHHHHHhcCC-----------------------CcEEEEecc----ccCccCCCCceEEEEecCCCCHHHHHHHHhhcc
Confidence 99999999985 999999999 99999999999999999999999999999997
Q ss_pred -cCCCCeEEEEEeCchhHHHHHHHHH
Q 028124 173 -LAADGSVINIVVGGEVVTLRSMEES 197 (213)
Q Consensus 173 -~~~~g~~i~~~~~~e~~~~~~le~~ 197 (213)
.|.+..|+.|+.++|....+.+.+.
T Consensus 323 RDG~~a~aill~~~~D~~~~~~~i~~ 348 (590)
T COG0514 323 RDGLPAEAILLYSPEDIRWQRYLIEQ 348 (590)
T ss_pred CCCCcceEEEeeccccHHHHHHHHHh
Confidence 5777999999999987766665443
No 42
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=99.84 E-value=6.2e-20 Score=167.05 Aligned_cols=128 Identities=20% Similarity=0.283 Sum_probs=112.2
Q ss_pred cCcchHHHHHHHHHHHhhcCCCCCCcEEEEeCchHHHHHHHHHHhccCCceEE-Eec--------CCCCHHHHHHHHHHH
Q 028124 30 DRLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFS-SLH--------SDLAETERTLILEEF 100 (213)
Q Consensus 30 ~~~~~K~~~L~~ll~~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~-~lh--------g~~~~~~R~~~l~~F 100 (213)
.-++.|++.+.+++++.+. ...+.++|||++.+++|+.+.+.|.+.+ ..+. .+- .||+++++.+++++|
T Consensus 344 ~v~HPKl~~l~eilke~~~-k~~~~RvIVFT~yRdTae~i~~~L~~~~-~~~~~rFiGQa~r~~~~GMsQkeQ~eiI~~F 421 (542)
T COG1111 344 GVEHPKLEKLREILKEQLE-KNGDSRVIVFTEYRDTAEEIVNFLKKIG-IKARVRFIGQASREGDKGMSQKEQKEIIDQF 421 (542)
T ss_pred cCCCccHHHHHHHHHHHHh-cCCCceEEEEehhHhHHHHHHHHHHhcC-CcceeEEeeccccccccccCHHHHHHHHHHH
Confidence 3346699999999988665 4567899999999999999999999886 4442 222 469999999999999
Q ss_pred hcccccccccccccCCCCCcCCCCCCceeEEEEeCCCCCcCcCCCCCCCCCEEEEecCCCChHHHHHhhccccCC-CCeE
Q 028124 101 RHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAA-DGSV 179 (213)
Q Consensus 101 r~g~~~~~~~~~~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~rGld~~~v~~VI~yd~P~~~~~yi~R~GR~~~~-~g~~ 179 (213)
++|+ .++||||++ .++|+|+|+++.||.|++-.|...++||.||+|++ .|.+
T Consensus 422 r~Ge-----------------------~nVLVaTSV----gEEGLDIp~vDlVifYEpvpSeIR~IQR~GRTGR~r~Grv 474 (542)
T COG1111 422 RKGE-----------------------YNVLVATSV----GEEGLDIPEVDLVIFYEPVPSEIRSIQRKGRTGRKRKGRV 474 (542)
T ss_pred hcCC-----------------------ceEEEEccc----ccccCCCCcccEEEEecCCcHHHHHHHhhCccccCCCCeE
Confidence 9997 999999999 99999999999999999999999999999999755 5999
Q ss_pred EEEEeCc
Q 028124 180 INIVVGG 186 (213)
Q Consensus 180 i~~~~~~ 186 (213)
+.+++.+
T Consensus 475 ~vLvt~g 481 (542)
T COG1111 475 VVLVTEG 481 (542)
T ss_pred EEEEecC
Confidence 9999876
No 43
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=99.83 E-value=4.6e-20 Score=181.70 Aligned_cols=169 Identities=12% Similarity=0.134 Sum_probs=127.8
Q ss_pred CCCCCCCCCCCCCCCCCCceEEEEEecCcchHHHHHHHHHHHhhcCCCCCCcEEEEeCchHHHHHHHHHHhcc-CCceEE
Q 028124 4 DGVESPCPPCQSPSHFSQPRHFYVAVDRLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNL-ADISFS 82 (213)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~K~~~L~~ll~~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~-~~~~~~ 82 (213)
-++..++.+...|..+..+++++...... .....+++.+ ..+++++||||++++++.+++.|++. +++++.
T Consensus 619 ~g~~d~s~I~~~p~~R~~V~t~v~~~~~~----~i~~~i~~el----~~g~qv~if~n~i~~~e~l~~~L~~~~p~~~v~ 690 (926)
T TIGR00580 619 SGIRDLSIIATPPEDRLPVRTFVMEYDPE----LVREAIRREL----LRGGQVFYVHNRIESIEKLATQLRELVPEARIA 690 (926)
T ss_pred hcCCCcEEEecCCCCccceEEEEEecCHH----HHHHHHHHHH----HcCCeEEEEECCcHHHHHHHHHHHHhCCCCeEE
Confidence 34555555555555556677776543221 1111222332 23579999999999999999999875 447999
Q ss_pred EecCCCCHHHHHHHHHHHhcccccccccccccCCCCCcCCCCCCceeEEEEeCCCCCcCcCCCCCCCCCEEEEecCCC-C
Q 028124 83 SLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPT-K 161 (213)
Q Consensus 83 ~lhg~~~~~~R~~~l~~Fr~g~~~~~~~~~~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~rGld~~~v~~VI~yd~P~-~ 161 (213)
.+||+|++++|.+++++|++|+ .++||||++ +++|+|+|++++||+++.|. .
T Consensus 691 ~lHG~m~~~eRe~im~~F~~Gk-----------------------~~ILVaT~i----ie~GIDIp~v~~VIi~~a~~~g 743 (926)
T TIGR00580 691 IAHGQMTENELEEVMLEFYKGE-----------------------FQVLVCTTI----IETGIDIPNANTIIIERADKFG 743 (926)
T ss_pred EecCCCCHHHHHHHHHHHHcCC-----------------------CCEEEECCh----hhcccccccCCEEEEecCCCCC
Confidence 9999999999999999999985 999999999 99999999999999999986 6
Q ss_pred hHHHHHhhccc--cCCCCeEEEEEeC------chhHHHHHHHHHh----cccccccCc
Q 028124 162 KETYIRRMTTC--LAADGSVINIVVG------GEVVTLRSMEESL----GLIVAEVPI 207 (213)
Q Consensus 162 ~~~yi~R~GR~--~~~~g~~i~~~~~------~e~~~~~~le~~l----~~~~~~~~~ 207 (213)
..+|.||+||+ +++.|.||.++.. .....++.++++. |+.+++..+
T Consensus 744 ls~l~Qr~GRvGR~g~~g~aill~~~~~~l~~~~~~RL~~~~~~~~~g~gf~ia~~Dl 801 (926)
T TIGR00580 744 LAQLYQLRGRVGRSKKKAYAYLLYPHQKALTEDAQKRLEAIQEFSELGAGFKIALHDL 801 (926)
T ss_pred HHHHHHHhcCCCCCCCCeEEEEEECCcccCCHHHHHHHHHHHHhhcchhhHHHHHHHH
Confidence 78999999996 5677999999854 3456667777664 555554443
No 44
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.82 E-value=2.8e-19 Score=171.22 Aligned_cols=145 Identities=17% Similarity=0.217 Sum_probs=126.6
Q ss_pred hHHHHHHHHHHHhhcCCCCCCcEEEEeCchHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhcccccccccccc
Q 028124 34 FKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTE 113 (213)
Q Consensus 34 ~K~~~L~~ll~~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~~~~~~~~ 113 (213)
.++..|.+.|.... ..+.++||||+++..++.|++.|...| +.+..+||++++.+|.+++++|+.|.
T Consensus 430 ~q~~~L~~~L~~~~---~~g~~viIf~~t~~~ae~L~~~L~~~g-i~~~~~h~~~~~~~R~~~l~~f~~g~--------- 496 (652)
T PRK05298 430 GQVDDLLSEIRKRV---AKGERVLVTTLTKRMAEDLTDYLKELG-IKVRYLHSDIDTLERVEIIRDLRLGE--------- 496 (652)
T ss_pred ccHHHHHHHHHHHH---hCCCEEEEEeCCHHHHHHHHHHHhhcc-eeEEEEECCCCHHHHHHHHHHHHcCC---------
Confidence 36667777665532 357899999999999999999999987 89999999999999999999999985
Q ss_pred cCCCCCcCCCCCCceeEEEEeCCCCCcCcCCCCCCCCCEEEEecC-----CCChHHHHHhhccccC-CCCeEEEEEeC--
Q 028124 114 QSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYEL-----PTKKETYIRRMTTCLA-ADGSVINIVVG-- 185 (213)
Q Consensus 114 ~~~~~~~~~~~~~~~~iLV~Td~~~~~~~rGld~~~v~~VI~yd~-----P~~~~~yi~R~GR~~~-~~g~~i~~~~~-- 185 (213)
..+||||+. +++|+|+|++++||++|. |.+..+|+||+||+|+ ..|.|++|+..
T Consensus 497 --------------i~vlV~t~~----L~rGfdlp~v~lVii~d~eifG~~~~~~~yiqr~GR~gR~~~G~~i~~~~~~~ 558 (652)
T PRK05298 497 --------------FDVLVGINL----LREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKVILYADKIT 558 (652)
T ss_pred --------------ceEEEEeCH----HhCCccccCCcEEEEeCCcccccCCCHHHHHHHhccccCCCCCEEEEEecCCC
Confidence 999999999 999999999999999984 8899999999999754 46999999984
Q ss_pred -------chhHHHHHHHHHhcccccccCccc
Q 028124 186 -------GEVVTLRSMEESLGLIVAEVPINI 209 (213)
Q Consensus 186 -------~e~~~~~~le~~l~~~~~~~~~~~ 209 (213)
.+...+++++..++.+...+|.++
T Consensus 559 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 589 (652)
T PRK05298 559 DSMQKAIDETERRREIQIAYNEEHGITPKTI 589 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhccCCCChhH
Confidence 577888889999998888887654
No 45
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=99.82 E-value=1.3e-19 Score=172.00 Aligned_cols=134 Identities=13% Similarity=0.095 Sum_probs=111.6
Q ss_pred CceEEEEEecCcchHHHHHHHHHHHhhcCCCCCCcEEEEeCchHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHH
Q 028124 21 QPRHFYVAVDRLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEF 100 (213)
Q Consensus 21 ~i~~~~~~~~~~~~K~~~L~~ll~~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~lhg~~~~~~R~~~l~~F 100 (213)
...+.+++++..+ |+..|.++++... ..+.++||||+|+..++.++..|...| +.+..+||++++.+ ..+..|
T Consensus 445 ~~~~~~v~~t~~~-K~~aL~~~i~~~~---~~~~pvLIft~t~~~se~L~~~L~~~g-i~~~~Lhg~~~~rE--~~ii~~ 517 (656)
T PRK12898 445 RHLPDEVFLTAAA-KWAAVAARVRELH---AQGRPVLVGTRSVAASERLSALLREAG-LPHQVLNAKQDAEE--AAIVAR 517 (656)
T ss_pred eecCCEEEeCHHH-HHHHHHHHHHHHH---hcCCCEEEEeCcHHHHHHHHHHHHHCC-CCEEEeeCCcHHHH--HHHHHH
Confidence 3556677777655 9999999997732 245789999999999999999999987 89999999875444 445555
Q ss_pred hcccccccccccccCCCCCcCCCCCCceeEEEEeCCCCCcCcCCCCCC---CCC-----EEEEecCCCChHHHHHhhccc
Q 028124 101 RHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAI---SAR-----VLINYELPTKKETYIRRMTTC 172 (213)
Q Consensus 101 r~g~~~~~~~~~~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~rGld~~---~v~-----~VI~yd~P~~~~~yi~R~GR~ 172 (213)
+.+ +..|+||||+ ++||+|++ +|. +|||||+|.+...|+||+||+
T Consensus 518 ag~-----------------------~g~VlVATdm----AgRGtDI~l~~~V~~~GGLhVI~~d~P~s~r~y~hr~GRT 570 (656)
T PRK12898 518 AGQ-----------------------RGRITVATNM----AGRGTDIKLEPGVAARGGLHVILTERHDSARIDRQLAGRC 570 (656)
T ss_pred cCC-----------------------CCcEEEEccc----hhcccCcCCccchhhcCCCEEEEcCCCCCHHHHHHhcccc
Confidence 554 2669999999 99999999 676 999999999999999999997
Q ss_pred --cCCCCeEEEEEeCchh
Q 028124 173 --LAADGSVINIVVGGEV 188 (213)
Q Consensus 173 --~~~~g~~i~~~~~~e~ 188 (213)
.|.+|.+++|++.+|.
T Consensus 571 GRqG~~G~s~~~is~eD~ 588 (656)
T PRK12898 571 GRQGDPGSYEAILSLEDD 588 (656)
T ss_pred cCCCCCeEEEEEechhHH
Confidence 5778999999997654
No 46
>PRK13767 ATP-dependent helicase; Provisional
Probab=99.81 E-value=3e-19 Score=175.92 Aligned_cols=97 Identities=12% Similarity=0.169 Sum_probs=89.0
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhcc-C----CceEEEecCCCCHHHHHHHHHHHhcccccccccccccCCCCCcCCCCCC
Q 028124 52 PGLPMIVCCSSRDELDAVCSAVSNL-A----DISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEH 126 (213)
Q Consensus 52 ~~~~~IIF~~~~~~~~~l~~~L~~~-~----~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~~~~~~~~~~~~~~~~~~~~~ 126 (213)
..+++||||||++.|+.++..|+.. + ...+..+||+|++++|..++++|++|.
T Consensus 283 ~~~~~LVF~nTr~~ae~la~~L~~~~~~~~~~~~i~~hHg~ls~~~R~~ve~~fk~G~---------------------- 340 (876)
T PRK13767 283 EHRTTLIFTNTRSGAERVLYNLRKRFPEEYDEDNIGAHHSSLSREVRLEVEEKLKRGE---------------------- 340 (876)
T ss_pred cCCCEEEEeCCHHHHHHHHHHHHHhchhhccccceeeeeCCCCHHHHHHHHHHHHcCC----------------------
Confidence 3578999999999999999999863 1 257899999999999999999999985
Q ss_pred ceeEEEEeCCCCCcCcCCCCCCCCCEEEEecCCCChHHHHHhhccccCC
Q 028124 127 KSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAA 175 (213)
Q Consensus 127 ~~~iLV~Td~~~~~~~rGld~~~v~~VI~yd~P~~~~~yi~R~GR~~~~ 175 (213)
+++||||++ +++|+|++++++||+|+.|.+..+|+||+||+|++
T Consensus 341 -i~vLVaTs~----Le~GIDip~Vd~VI~~~~P~sv~~ylQRiGRaGR~ 384 (876)
T PRK13767 341 -LKVVVSSTS----LELGIDIGYIDLVVLLGSPKSVSRLLQRIGRAGHR 384 (876)
T ss_pred -CeEEEECCh----HHhcCCCCCCcEEEEeCCCCCHHHHHHhcccCCCC
Confidence 999999999 99999999999999999999999999999998644
No 47
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.81 E-value=7.5e-19 Score=168.06 Aligned_cols=134 Identities=16% Similarity=0.218 Sum_probs=115.6
Q ss_pred chHHHHHHHHHHHhhcCCCCCCcEEEEeCchHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhccccccccccc
Q 028124 33 QFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVT 112 (213)
Q Consensus 33 ~~K~~~L~~ll~~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~~~~~~~ 112 (213)
..+++.|.+.++... ..+.++||||+|+..++.|++.|...| +.+..+||++++.+|.+++++|+.|.
T Consensus 425 ~~qi~~Ll~eI~~~~---~~g~~vLIf~~tk~~ae~L~~~L~~~g-i~~~~lh~~~~~~eR~~~l~~fr~G~-------- 492 (655)
T TIGR00631 425 DGQVDDLLSEIRQRV---ARNERVLVTTLTKKMAEDLTDYLKELG-IKVRYLHSEIDTLERVEIIRDLRLGE-------- 492 (655)
T ss_pred cchHHHHHHHHHHHH---cCCCEEEEEECCHHHHHHHHHHHhhhc-cceeeeeCCCCHHHHHHHHHHHhcCC--------
Confidence 336777777665532 357899999999999999999999987 89999999999999999999999985
Q ss_pred ccCCCCCcCCCCCCceeEEEEeCCCCCcCcCCCCCCCCCEEEEec-----CCCChHHHHHhhccccCC-CCeEEEEEeCc
Q 028124 113 EQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYE-----LPTKKETYIRRMTTCLAA-DGSVINIVVGG 186 (213)
Q Consensus 113 ~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~rGld~~~v~~VI~yd-----~P~~~~~yi~R~GR~~~~-~g~~i~~~~~~ 186 (213)
+.+||||+. +++|+|+|++++||++| +|.+..+|+||+||+++. .|.|+.++...
T Consensus 493 ---------------i~VLV~t~~----L~rGfDiP~v~lVvi~DadifG~p~~~~~~iqriGRagR~~~G~vi~~~~~~ 553 (655)
T TIGR00631 493 ---------------FDVLVGINL----LREGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKVIMYADKI 553 (655)
T ss_pred ---------------ceEEEEcCh----hcCCeeeCCCcEEEEeCcccccCCCCHHHHHHHhcCCCCCCCCEEEEEEcCC
Confidence 999999999 99999999999999999 899999999999998544 69999999876
Q ss_pred hhHHHHHHHHH
Q 028124 187 EVVTLRSMEES 197 (213)
Q Consensus 187 e~~~~~~le~~ 197 (213)
+..+...+++.
T Consensus 554 ~~~~~~ai~~~ 564 (655)
T TIGR00631 554 TDSMQKAIEET 564 (655)
T ss_pred CHHHHHHHHHH
Confidence 65555555443
No 48
>PRK13766 Hef nuclease; Provisional
Probab=99.79 E-value=1.8e-18 Score=168.29 Aligned_cols=127 Identities=21% Similarity=0.304 Sum_probs=112.5
Q ss_pred CcchHHHHHHHHHHHhhcCCCCCCcEEEEeCchHHHHHHHHHHhccCCceEEEecCC--------CCHHHHHHHHHHHhc
Q 028124 31 RLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSD--------LAETERTLILEEFRH 102 (213)
Q Consensus 31 ~~~~K~~~L~~ll~~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~lhg~--------~~~~~R~~~l~~Fr~ 102 (213)
....|++.|.++|+.... ..++.++||||+++++|+.|++.|...+ +.+..+||. |++.+|..++++|+.
T Consensus 344 ~~~pK~~~L~~il~~~~~-~~~~~kvlIF~~~~~t~~~L~~~L~~~~-~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~ 421 (773)
T PRK13766 344 IEHPKLEKLREIVKEQLG-KNPDSRIIVFTQYRDTAEKIVDLLEKEG-IKAVRFVGQASKDGDKGMSQKEQIEILDKFRA 421 (773)
T ss_pred cCChHHHHHHHHHHHHHh-cCCCCeEEEEeCcHHHHHHHHHHHHhCC-CceEEEEccccccccCCCCHHHHHHHHHHHHc
Confidence 345699999999987543 3567899999999999999999998876 788889886 999999999999999
Q ss_pred ccccccccccccCCCCCcCCCCCCceeEEEEeCCCCCcCcCCCCCCCCCEEEEecCCCChHHHHHhhccccCC-CCeEEE
Q 028124 103 TAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAA-DGSVIN 181 (213)
Q Consensus 103 g~~~~~~~~~~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~rGld~~~v~~VI~yd~P~~~~~yi~R~GR~~~~-~g~~i~ 181 (213)
|+ .++||+|++ +++|+|+|++++||+||+|++...|+||+||+++. .|.++.
T Consensus 422 g~-----------------------~~vLvaT~~----~~eGldi~~~~~VI~yd~~~s~~r~iQR~GR~gR~~~~~v~~ 474 (773)
T PRK13766 422 GE-----------------------FNVLVSTSV----AEEGLDIPSVDLVIFYEPVPSEIRSIQRKGRTGRQEEGRVVV 474 (773)
T ss_pred CC-----------------------CCEEEECCh----hhcCCCcccCCEEEEeCCCCCHHHHHHHhcccCcCCCCEEEE
Confidence 85 999999999 99999999999999999999999999999998653 588888
Q ss_pred EEeCc
Q 028124 182 IVVGG 186 (213)
Q Consensus 182 ~~~~~ 186 (213)
++..+
T Consensus 475 l~~~~ 479 (773)
T PRK13766 475 LIAKG 479 (773)
T ss_pred EEeCC
Confidence 88754
No 49
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.79 E-value=1.7e-19 Score=161.09 Aligned_cols=155 Identities=19% Similarity=0.252 Sum_probs=141.4
Q ss_pred CCCCCCceEEEEEecCcchHHHHHHHHHHHhhcCCCCCCcEEEEeCchHHHHHHHHHHhccCCceEEEecCCCCHHHHHH
Q 028124 16 PSHFSQPRHFYVAVDRLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTL 95 (213)
Q Consensus 16 ~~~~~~i~~~~~~~~~~~~K~~~L~~ll~~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~lhg~~~~~~R~~ 95 (213)
....+.+++.+..+...+ |...|..++... ...++++|||.|+..++.+...|...| +.+..++|.|+++.|..
T Consensus 229 tkise~lk~~f~~~~~a~-K~aaLl~il~~~----~~~~~t~vf~~tk~hve~~~~ll~~~g-~~~s~iysslD~~aRk~ 302 (529)
T KOG0337|consen 229 TKISELLKVRFFRVRKAE-KEAALLSILGGR----IKDKQTIVFVATKHHVEYVRGLLRDFG-GEGSDIYSSLDQEARKI 302 (529)
T ss_pred hhcchhhhhheeeeccHH-HHHHHHHHHhcc----ccccceeEEecccchHHHHHHHHHhcC-CCccccccccChHhhhh
Confidence 344567888999999887 999999999872 346799999999999999999999987 79999999999999999
Q ss_pred HHHHHhcccccccccccccCCCCCcCCCCCCceeEEEEeCCCCCcCcCCCCCCCCCEEEEecCCCChHHHHHhhccc--c
Q 028124 96 ILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTC--L 173 (213)
Q Consensus 96 ~l~~Fr~g~~~~~~~~~~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~rGld~~~v~~VI~yd~P~~~~~yi~R~GR~--~ 173 (213)
.+++|+.+ +..+||.||+ ++||+|+|-.+.|||||+|.+...|.||+||. .
T Consensus 303 ~~~~F~~~-----------------------k~~~lvvTdv----aaRG~diplldnvinyd~p~~~klFvhRVgr~ara 355 (529)
T KOG0337|consen 303 NGRDFRGR-----------------------KTSILVVTDV----AARGLDIPLLDNVINYDFPPDDKLFVHRVGRVARA 355 (529)
T ss_pred ccccccCC-----------------------ccceEEEehh----hhccCCCccccccccccCCCCCceEEEEecchhhc
Confidence 99999997 5899999999 99999999999999999999999999999995 6
Q ss_pred CCCCeEEEEEeCchhHHHHHHHHHhccccc
Q 028124 174 AADGSVINIVVGGEVVTLRSMEESLGLIVA 203 (213)
Q Consensus 174 ~~~g~~i~~~~~~e~~~~~~le~~l~~~~~ 203 (213)
|+.|.+|+||.+.+..++-.|..++|..+.
T Consensus 356 grtg~aYs~V~~~~~~yl~DL~lflgr~~~ 385 (529)
T KOG0337|consen 356 GRTGRAYSLVASTDDPYLLDLQLFLGRPLI 385 (529)
T ss_pred cccceEEEEEecccchhhhhhhhhcCCcee
Confidence 899999999999999999999999987654
No 50
>PRK10689 transcription-repair coupling factor; Provisional
Probab=99.79 E-value=7.4e-19 Score=176.37 Aligned_cols=170 Identities=12% Similarity=0.164 Sum_probs=123.4
Q ss_pred CCCCCCCCCCCCCCCCCCCceEEEEEecCcchHHHHHHHHHHHhhcCCCCCCcEEEEeCchHHHHHHHHHHhcc-CCceE
Q 028124 3 IDGVESPCPPCQSPSHFSQPRHFYVAVDRLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNL-ADISF 81 (213)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~K~~~L~~ll~~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~-~~~~~ 81 (213)
..++..|..+...|..+..+++++........|.. ++..+. .+++++||||++..++.+++.|.+. ++..+
T Consensus 767 ~~gl~d~~~I~~~p~~r~~v~~~~~~~~~~~~k~~----il~el~----r~gqv~vf~n~i~~ie~la~~L~~~~p~~~v 838 (1147)
T PRK10689 767 MSGMRDLSIIATPPARRLAVKTFVREYDSLVVREA----ILREIL----RGGQVYYLYNDVENIQKAAERLAELVPEARI 838 (1147)
T ss_pred HhhCCCcEEEecCCCCCCCceEEEEecCcHHHHHH----HHHHHh----cCCeEEEEECCHHHHHHHHHHHHHhCCCCcE
Confidence 34555666555555555667777765443222333 333321 2479999999999999999999876 34789
Q ss_pred EEecCCCCHHHHHHHHHHHhcccccccccccccCCCCCcCCCCCCceeEEEEeCCCCCcCcCCCCCCCCCEEEEecCC-C
Q 028124 82 SSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELP-T 160 (213)
Q Consensus 82 ~~lhg~~~~~~R~~~l~~Fr~g~~~~~~~~~~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~rGld~~~v~~VI~yd~P-~ 160 (213)
..+||+|++++|.+++++|++|. .++||||++ ++||+|+|++++||.++.. .
T Consensus 839 ~~lHG~m~q~eRe~im~~Fr~Gk-----------------------~~VLVaTdI----ierGIDIP~v~~VIi~~ad~f 891 (1147)
T PRK10689 839 AIGHGQMRERELERVMNDFHHQR-----------------------FNVLVCTTI----IETGIDIPTANTIIIERADHF 891 (1147)
T ss_pred EEEeCCCCHHHHHHHHHHHHhcC-----------------------CCEEEECch----hhcccccccCCEEEEecCCCC
Confidence 99999999999999999999985 999999999 9999999999999954432 2
Q ss_pred ChHHHHHhhccc--cCCCCeEEEEEeCc------hhHHHHHHHHHh----cccccccCc
Q 028124 161 KKETYIRRMTTC--LAADGSVINIVVGG------EVVTLRSMEESL----GLIVAEVPI 207 (213)
Q Consensus 161 ~~~~yi~R~GR~--~~~~g~~i~~~~~~------e~~~~~~le~~l----~~~~~~~~~ 207 (213)
+...|+||+||+ .++.|.|+.+.... ....+..++++. |+.+++..+
T Consensus 892 glaq~~Qr~GRvGR~g~~g~a~ll~~~~~~~~~~~~~rl~~~~~~~~lg~gf~~a~~dl 950 (1147)
T PRK10689 892 GLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDL 950 (1147)
T ss_pred CHHHHHHHhhccCCCCCceEEEEEeCCCcccCHHHHHHHHHHHHhcCCcchHHHHHHHH
Confidence 456799999997 45679999887532 344555565543 344444433
No 51
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=99.79 E-value=1.6e-18 Score=167.63 Aligned_cols=127 Identities=15% Similarity=0.155 Sum_probs=110.6
Q ss_pred EecCcchHHHHHHHHHHHhhcCCCCCCcEEEEeCchHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhcccccc
Q 028124 28 AVDRLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKW 107 (213)
Q Consensus 28 ~~~~~~~K~~~L~~ll~~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~~ 107 (213)
++.. ..|+..|.+.+.... ..+.++||||+|+..++.++..|.+.+ +.+..+||++++.++..+...++.
T Consensus 407 ~~~~-~~K~~al~~~i~~~~---~~~~pvLIf~~t~~~se~l~~~L~~~g-i~~~~L~~~~~~~e~~~i~~ag~~----- 476 (790)
T PRK09200 407 FVTL-DEKYKAVIEEVKERH---ETGRPVLIGTGSIEQSETFSKLLDEAG-IPHNLLNAKNAAKEAQIIAEAGQK----- 476 (790)
T ss_pred EcCH-HHHHHHHHHHHHHHH---hcCCCEEEEeCcHHHHHHHHHHHHHCC-CCEEEecCCccHHHHHHHHHcCCC-----
Confidence 3444 449999999887631 357899999999999999999999987 899999999999888877777665
Q ss_pred cccccccCCCCCcCCCCCCceeEEEEeCCCCCcCcCCCCC---CCCC-----EEEEecCCCChHHHHHhhccc--cCCCC
Q 028124 108 NQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESA---ISAR-----VLINYELPTKKETYIRRMTTC--LAADG 177 (213)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~rGld~---~~v~-----~VI~yd~P~~~~~yi~R~GR~--~~~~g 177 (213)
.+|+||||+ ++||+|+ ++|. +|||||+|.+...|+||+||+ .|.+|
T Consensus 477 --------------------g~VlIATdm----AgRG~DI~l~~~V~~~GGL~VI~~d~p~s~r~y~qr~GRtGR~G~~G 532 (790)
T PRK09200 477 --------------------GAVTVATNM----AGRGTDIKLGEGVHELGGLAVIGTERMESRRVDLQLRGRSGRQGDPG 532 (790)
T ss_pred --------------------CeEEEEccc----hhcCcCCCcccccccccCcEEEeccCCCCHHHHHHhhccccCCCCCe
Confidence 469999999 9999999 7998 999999999999999999997 57789
Q ss_pred eEEEEEeCchh
Q 028124 178 SVINIVVGGEV 188 (213)
Q Consensus 178 ~~i~~~~~~e~ 188 (213)
.+++|++.+|.
T Consensus 533 ~s~~~is~eD~ 543 (790)
T PRK09200 533 SSQFFISLEDD 543 (790)
T ss_pred eEEEEEcchHH
Confidence 99999987654
No 52
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.78 E-value=1.9e-18 Score=168.68 Aligned_cols=139 Identities=12% Similarity=0.145 Sum_probs=111.4
Q ss_pred CCceEEEEEecCcchHH-HHHHHHHHHhhcCCCCCCcEEEEeCchHHHHHHHHHHhcc--CCceEEEecCCCCHHHHHHH
Q 028124 20 SQPRHFYVAVDRLQFKM-ETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNL--ADISFSSLHSDLAETERTLI 96 (213)
Q Consensus 20 ~~i~~~~~~~~~~~~K~-~~L~~ll~~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~--~~~~~~~lhg~~~~~~R~~~ 96 (213)
..++++|..+...+ ++ ..+...+..+.. ...+++||||+++.+++.+++.|.+. .++.+..+||+|++++|..+
T Consensus 178 ~pVe~~y~~~~~~~-~~~~~v~~~l~~~l~--~~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~v~pLHg~L~~~eq~~~ 254 (819)
T TIGR01970 178 FPVEIRYLPLRGDQ-RLEDAVSRAVEHALA--SETGSILVFLPGQAEIRRVQEQLAERLDSDVLICPLYGELSLAAQDRA 254 (819)
T ss_pred eeeeeEEeecchhh-hHHHHHHHHHHHHHH--hcCCcEEEEECCHHHHHHHHHHHHhhcCCCcEEEEecCCCCHHHHHHH
Confidence 35888888776554 33 222222222221 13578999999999999999999863 24889999999999999999
Q ss_pred HHHHhcccccccccccccCCCCCcCCCCCCceeEEEEeCCCCCcCcCCCCCCCCCEEEEecCCCC---------------
Q 028124 97 LEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTK--------------- 161 (213)
Q Consensus 97 l~~Fr~g~~~~~~~~~~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~rGld~~~v~~VI~yd~P~~--------------- 161 (213)
++.|++|. .+||||||+ +++|+|+++|++|||+++|+.
T Consensus 255 ~~~~~~G~-----------------------rkVlVATnI----AErgItIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~ 307 (819)
T TIGR01970 255 IKPDPQGR-----------------------RKVVLATNI----AETSLTIEGIRVVIDSGLARVARFDPKTGITRLETV 307 (819)
T ss_pred HhhcccCC-----------------------eEEEEecch----HhhcccccCceEEEEcCcccccccccccCCceeeEE
Confidence 99999984 999999999 999999999999999999863
Q ss_pred ---hHHHHHhhccccC-CCCeEEEEEeCchh
Q 028124 162 ---KETYIRRMTTCLA-ADGSVINIVVGGEV 188 (213)
Q Consensus 162 ---~~~yi~R~GR~~~-~~g~~i~~~~~~e~ 188 (213)
.++|+||+||+|+ ++|.||.+++..+.
T Consensus 308 ~iSkasa~QR~GRAGR~~~G~cyrL~t~~~~ 338 (819)
T TIGR01970 308 RISQASATQRAGRAGRLEPGVCYRLWSEEQH 338 (819)
T ss_pred EECHHHHHhhhhhcCCCCCCEEEEeCCHHHH
Confidence 3468999999875 57999999987654
No 53
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.78 E-value=6.6e-18 Score=127.83 Aligned_cols=127 Identities=28% Similarity=0.512 Sum_probs=109.7
Q ss_pred ceEEEEEecCcchHHHHHHHHHHHhhcCCCCCCcEEEEeCchHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHh
Q 028124 22 PRHFYVAVDRLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFR 101 (213)
Q Consensus 22 i~~~~~~~~~~~~K~~~L~~ll~~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~lhg~~~~~~R~~~l~~Fr 101 (213)
|+++|...++ .|...+.+++.... ....++||||++...++.+++.|...+ ..+..+||++++.+|..++++|+
T Consensus 2 i~~~~~~~~~--~k~~~i~~~i~~~~---~~~~~~lvf~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~f~ 75 (131)
T cd00079 2 IKQYVLPVED--EKLEALLELLKEHL---KKGGKVLIFCPSKKMLDELAELLRKPG-IKVAALHGDGSQEEREEVLKDFR 75 (131)
T ss_pred cEEEEEECCH--HHHHHHHHHHHhcc---cCCCcEEEEeCcHHHHHHHHHHHHhcC-CcEEEEECCCCHHHHHHHHHHHH
Confidence 5666665443 59999999987732 257899999999999999999998865 78999999999999999999999
Q ss_pred cccccccccccccCCCCCcCCCCCCceeEEEEeCCCCCcCcCCCCCCCCCEEEEecCCCChHHHHHhhccc--cCCCCeE
Q 028124 102 HTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTC--LAADGSV 179 (213)
Q Consensus 102 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~rGld~~~v~~VI~yd~P~~~~~yi~R~GR~--~~~~g~~ 179 (213)
.+. ..+|++|.+ +++|+|+|.+++||.+++|++...|+|++||+ .|+.|.+
T Consensus 76 ~~~-----------------------~~ili~t~~----~~~G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~ 128 (131)
T cd00079 76 EGE-----------------------IVVLVATDV----IARGIDLPNVSVVINYDLPWSPSSYLQRIGRAGRAGQKGTA 128 (131)
T ss_pred cCC-----------------------CcEEEEcCh----hhcCcChhhCCEEEEeCCCCCHHHheecccccccCCCCceE
Confidence 984 899999999 99999999999999999999999999999996 4445665
Q ss_pred EE
Q 028124 180 IN 181 (213)
Q Consensus 180 i~ 181 (213)
+.
T Consensus 129 ~~ 130 (131)
T cd00079 129 IL 130 (131)
T ss_pred Ee
Confidence 54
No 54
>PHA02653 RNA helicase NPH-II; Provisional
Probab=99.78 E-value=3.5e-18 Score=163.63 Aligned_cols=146 Identities=15% Similarity=0.147 Sum_probs=111.0
Q ss_pred CCCCceEEEEEecC---------cchHHHHHHHHHHHhhcCCCCCCcEEEEeCchHHHHHHHHHHhcc-CCceEEEecCC
Q 028124 18 HFSQPRHFYVAVDR---------LQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNL-ADISFSSLHSD 87 (213)
Q Consensus 18 ~~~~i~~~~~~~~~---------~~~K~~~L~~ll~~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~-~~~~~~~lhg~ 87 (213)
+...|+|+|+.... ...|...+..+.+. . ...++++||||+++.+++.+++.|.+. +++.+..+||+
T Consensus 354 t~~pV~~~yi~~~~~~~~~~~y~~~~k~~~l~~L~~~-~--~~~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~v~~LHG~ 430 (675)
T PHA02653 354 TLFPISEVYVKNKYNPKNKRAYIEEEKKNIVTALKKY-T--PPKGSSGIVFVASVSQCEEYKKYLEKRLPIYDFYIIHGK 430 (675)
T ss_pred cCCCeEEEEeecCcccccchhhhHHHHHHHHHHHHHh-h--cccCCcEEEEECcHHHHHHHHHHHHhhcCCceEEeccCC
Confidence 34678888875431 11233333333222 1 123568999999999999999999876 23899999999
Q ss_pred CCHHHHHHHHHHH-hcccccccccccccCCCCCcCCCCCCceeEEEEeCCCCCcCcCCCCCCCCCEEEEec---CCC---
Q 028124 88 LAETERTLILEEF-RHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYE---LPT--- 160 (213)
Q Consensus 88 ~~~~~R~~~l~~F-r~g~~~~~~~~~~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~rGld~~~v~~VI~yd---~P~--- 160 (213)
|++. .+.+++| ++| +.++|||||+ ++||+|+++|++||+++ .|.
T Consensus 431 Lsq~--eq~l~~ff~~g-----------------------k~kILVATdI----AERGIDIp~V~~VID~G~~k~p~~~~ 481 (675)
T PHA02653 431 VPNI--DEILEKVYSSK-----------------------NPSIIISTPY----LESSVTIRNATHVYDTGRVYVPEPFG 481 (675)
T ss_pred cCHH--HHHHHHHhccC-----------------------ceeEEeccCh----hhccccccCeeEEEECCCccCCCccc
Confidence 9974 5677887 566 4999999999 99999999999999999 676
Q ss_pred ------ChHHHHHhhccccC-CCCeEEEEEeCchhHHHHHHH
Q 028124 161 ------KKETYIRRMTTCLA-ADGSVINIVVGGEVVTLRSME 195 (213)
Q Consensus 161 ------~~~~yi~R~GR~~~-~~g~~i~~~~~~e~~~~~~le 195 (213)
|.++|+||+||+|+ ++|.|+.|+++.+...+.+++
T Consensus 482 g~~~~iSkasa~QRaGRAGR~~~G~c~rLyt~~~~~pI~ri~ 523 (675)
T PHA02653 482 GKEMFISKSMRTQRKGRVGRVSPGTYVYFYDLDLLKPIKRID 523 (675)
T ss_pred CcccccCHHHHHHhccCcCCCCCCeEEEEECHHHhHHHHHHh
Confidence 88999999999865 469999999987654444444
No 55
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=99.78 E-value=2.8e-18 Score=174.32 Aligned_cols=129 Identities=14% Similarity=0.132 Sum_probs=102.7
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhccC--------------------------------CceEEEecCCCCHHHHHHHHHH
Q 028124 52 PGLPMIVCCSSRDELDAVCSAVSNLA--------------------------------DISFSSLHSDLAETERTLILEE 99 (213)
Q Consensus 52 ~~~~~IIF~~~~~~~~~l~~~L~~~~--------------------------------~~~~~~lhg~~~~~~R~~~l~~ 99 (213)
...++||||||+..|+.++..|++.. .+.+..+||+|++++|..+.++
T Consensus 243 ~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsLSkeeR~~IE~~ 322 (1490)
T PRK09751 243 RHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSVSKEQRAITEQA 322 (1490)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhccccccceeeeeccccCCHHHHHHHHHH
Confidence 35799999999999999999997531 0125689999999999999999
Q ss_pred HhcccccccccccccCCCCCcCCCCCCceeEEEEeCCCCCcCcCCCCCCCCCEEEEecCCCChHHHHHhhccccCCC-Ce
Q 028124 100 FRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAAD-GS 178 (213)
Q Consensus 100 Fr~g~~~~~~~~~~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~rGld~~~v~~VI~yd~P~~~~~yi~R~GR~~~~~-g~ 178 (213)
|++|. +++||||+. +++|||++++++||||+.|.+..+|+||+||+|++. |.
T Consensus 323 fK~G~-----------------------LrvLVATss----LELGIDIg~VDlVIq~gsP~sVas~LQRiGRAGR~~gg~ 375 (1490)
T PRK09751 323 LKSGE-----------------------LRCVVATSS----LELGIDMGAVDLVIQVATPLSVASGLQRIGRAGHQVGGV 375 (1490)
T ss_pred HHhCC-----------------------ceEEEeCcH----HHccCCcccCCEEEEeCCCCCHHHHHHHhCCCCCCCCCc
Confidence 99995 999999999 999999999999999999999999999999987654 33
Q ss_pred EEEEEeCchhHHH----HHHHHHhcccccccCc
Q 028124 179 VINIVVGGEVVTL----RSMEESLGLIVAEVPI 207 (213)
Q Consensus 179 ~i~~~~~~e~~~~----~~le~~l~~~~~~~~~ 207 (213)
+..++.+.+...+ --++..+...++++..
T Consensus 376 s~gli~p~~r~dlle~~~~ve~~l~g~iE~~~~ 408 (1490)
T PRK09751 376 SKGLFFPRTRRDLVDSAVIVECMFAGRLENLTP 408 (1490)
T ss_pred cEEEEEeCcHHHHHhhHHHHHHHhcCCCCccCC
Confidence 3333333222222 2367777777776544
No 56
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=99.78 E-value=1.5e-18 Score=155.83 Aligned_cols=132 Identities=23% Similarity=0.365 Sum_probs=117.3
Q ss_pred CCCCcEEEEeCchHHHHHHHHHHhccC--CceEEEecCCCCHHHHHHHHHHHhcccccccccccccCCCCCcCCCCCCce
Q 028124 51 RPGLPMIVCCSSRDELDAVCSAVSNLA--DISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKS 128 (213)
Q Consensus 51 ~~~~~~IIF~~~~~~~~~l~~~L~~~~--~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (213)
....++||||.|+..|+.|-+++..+| +++++++||+..+.||.+.++.|+.+. .
T Consensus 503 h~mdkaiifcrtk~dcDnLer~~~qkgg~~~scvclhgDrkP~Erk~nle~Fkk~d-----------------------v 559 (725)
T KOG0349|consen 503 HAMDKAIIFCRTKQDCDNLERMMNQKGGKHYSCVCLHGDRKPDERKANLESFKKFD-----------------------V 559 (725)
T ss_pred hccCceEEEEeccccchHHHHHHHHcCCccceeEEEecCCChhHHHHHHHhhhhcC-----------------------e
Confidence 467899999999999999999998774 378999999999999999999999986 9
Q ss_pred eEEEEeCCCCCcCcCCCCCCCCCEEEEecCCCChHHHHHhhccccCC--CCeEEEEEeC---------------------
Q 028124 129 HMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAA--DGSVINIVVG--------------------- 185 (213)
Q Consensus 129 ~iLV~Td~~~~~~~rGld~~~v~~VI~yd~P~~~~~yi~R~GR~~~~--~g~~i~~~~~--------------------- 185 (213)
+.|||||+ ++||+|+..+.++||.-+|.+...|+||+||.|+. -|.+|+++..
T Consensus 560 kflictdv----aargldi~g~p~~invtlpd~k~nyvhrigrvgraermglaislvat~~ekvwyh~c~srgr~c~nt~ 635 (725)
T KOG0349|consen 560 KFLICTDV----AARGLDITGLPFMINVTLPDDKTNYVHRIGRVGRAERMGLAISLVATVPEKVWYHWCKSRGRSCNNTN 635 (725)
T ss_pred EEEEEehh----hhccccccCCceEEEEecCcccchhhhhhhccchhhhcceeEEEeeccchheeehhhhccCCcccCCc
Confidence 99999999 99999999999999999999999999999997544 4888888742
Q ss_pred -----------chhHHHHHHHHHhcccccccCccc
Q 028124 186 -----------GEVVTLRSMEESLGLIVAEVPINI 209 (213)
Q Consensus 186 -----------~e~~~~~~le~~l~~~~~~~~~~~ 209 (213)
+|...+.++|.++++.++.+..++
T Consensus 636 l~e~~gc~iwyne~~llaeve~hln~ti~qv~~~~ 670 (725)
T KOG0349|consen 636 LTEVRGCCIWYNEPNLLAEVEDHLNITIQQVDKTM 670 (725)
T ss_pred cccccceEEEeCchhHHHHHHHhhcceeeeeCCCC
Confidence 355788899999999988776554
No 57
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=99.77 E-value=4.8e-18 Score=163.53 Aligned_cols=130 Identities=15% Similarity=0.225 Sum_probs=104.0
Q ss_pred CCCcEEEEeCch--------HHHHHHHHHHhcc-CCceEEEecCCCCHHHHHHHHHHHhcccccccccccccCCCCCcCC
Q 028124 52 PGLPMIVCCSSR--------DELDAVCSAVSNL-ADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETG 122 (213)
Q Consensus 52 ~~~~~IIF~~~~--------~~~~~l~~~L~~~-~~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~~~~~~~~~~~~~~~~~ 122 (213)
.+.+++|||+.. ..++.+++.|.+. +++.+..+||+|++++|.+++++|++|+
T Consensus 470 ~g~q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~------------------ 531 (681)
T PRK10917 470 KGRQAYVVCPLIEESEKLDLQSAEETYEELQEAFPELRVGLLHGRMKPAEKDAVMAAFKAGE------------------ 531 (681)
T ss_pred cCCcEEEEEcccccccchhHHHHHHHHHHHHHHCCCCcEEEEeCCCCHHHHHHHHHHHHcCC------------------
Confidence 578999999953 4567778888764 2378999999999999999999999985
Q ss_pred CCCCceeEEEEeCCCCCcCcCCCCCCCCCEEEEecCCCC-hHHHHHhhccc--cCCCCeEEEEEe-C---chhHHHHHHH
Q 028124 123 KDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTK-KETYIRRMTTC--LAADGSVINIVV-G---GEVVTLRSME 195 (213)
Q Consensus 123 ~~~~~~~iLV~Td~~~~~~~rGld~~~v~~VI~yd~P~~-~~~yi~R~GR~--~~~~g~~i~~~~-~---~e~~~~~~le 195 (213)
.++||||++ +++|+|+|++++||+|+.|+. .+.|.||+||+ +|..|.|+.++. + .....+..++
T Consensus 532 -----~~ILVaT~v----ie~GiDip~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~ill~~~~~~~~~~~rl~~~~ 602 (681)
T PRK10917 532 -----IDILVATTV----IEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGAAQSYCVLLYKDPLSETARERLKIMR 602 (681)
T ss_pred -----CCEEEECcc----eeeCcccCCCcEEEEeCCCCCCHHHHHHHhhcccCCCCceEEEEEECCCCChhHHHHHHHHH
Confidence 999999999 999999999999999999984 67788899996 566799999995 3 2344555565
Q ss_pred H-HhcccccccCcc
Q 028124 196 E-SLGLIVAEVPIN 208 (213)
Q Consensus 196 ~-~l~~~~~~~~~~ 208 (213)
+ .-|+.+++..+.
T Consensus 603 ~~~dgf~iae~dl~ 616 (681)
T PRK10917 603 ETNDGFVIAEKDLE 616 (681)
T ss_pred HhcchHHHHHHhHh
Confidence 4 235555554443
No 58
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=99.75 E-value=6.8e-18 Score=164.83 Aligned_cols=138 Identities=9% Similarity=0.149 Sum_probs=111.6
Q ss_pred CceEEEEEecCcchHHH-HHHHHHHHhhcCCCCCCcEEEEeCchHHHHHHHHHHhcc--CCceEEEecCCCCHHHHHHHH
Q 028124 21 QPRHFYVAVDRLQFKME-TLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNL--ADISFSSLHSDLAETERTLIL 97 (213)
Q Consensus 21 ~i~~~~~~~~~~~~K~~-~L~~ll~~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~--~~~~~~~lhg~~~~~~R~~~l 97 (213)
.++++|..++..+ ++. .+...+..+.. ...+++||||+++.+++.+++.|... .++.+..+||+|++++|.+++
T Consensus 182 pV~~~y~~~~~~~-~~~~~v~~~l~~~l~--~~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~~v~~Lhg~l~~~eq~~~~ 258 (812)
T PRK11664 182 PVERRYQPLPAHQ-RFDEAVARATAELLR--QESGSLLLFLPGVGEIQRVQEQLASRVASDVLLCPLYGALSLAEQQKAI 258 (812)
T ss_pred cceEEeccCchhh-hHHHHHHHHHHHHHH--hCCCCEEEEcCCHHHHHHHHHHHHHhccCCceEEEeeCCCCHHHHHHHh
Confidence 5888888776655 443 22223332222 23579999999999999999999862 237899999999999999999
Q ss_pred HHHhcccccccccccccCCCCCcCCCCCCceeEEEEeCCCCCcCcCCCCCCCCCEEEEecCCCC----------------
Q 028124 98 EEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTK---------------- 161 (213)
Q Consensus 98 ~~Fr~g~~~~~~~~~~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~rGld~~~v~~VI~yd~P~~---------------- 161 (213)
+.|++|. .+||||||+ +++|+|+++|++|||+++|+.
T Consensus 259 ~~~~~G~-----------------------rkVlvATnI----AErsLtIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~ 311 (812)
T PRK11664 259 LPAPAGR-----------------------RKVVLATNI----AETSLTIEGIRLVVDSGLERVARFDPKTGLTRLVTQR 311 (812)
T ss_pred ccccCCC-----------------------eEEEEecch----HHhcccccCceEEEECCCcccccccccCCcceeEEEe
Confidence 9999984 999999999 999999999999999888763
Q ss_pred --hHHHHHhhccccC-CCCeEEEEEeCchh
Q 028124 162 --KETYIRRMTTCLA-ADGSVINIVVGGEV 188 (213)
Q Consensus 162 --~~~yi~R~GR~~~-~~g~~i~~~~~~e~ 188 (213)
.++|+||+||+|+ .+|.||.++++.+.
T Consensus 312 iSkasa~QR~GRaGR~~~G~cyrL~t~~~~ 341 (812)
T PRK11664 312 ISQASMTQRAGRAGRLEPGICLHLYSKEQA 341 (812)
T ss_pred echhhhhhhccccCCCCCcEEEEecCHHHH
Confidence 3589999999865 57999999997544
No 59
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=99.75 E-value=1.9e-17 Score=158.20 Aligned_cols=105 Identities=14% Similarity=0.189 Sum_probs=92.4
Q ss_pred CCCcEEEEeCch--------HHHHHHHHHHhcc-CCceEEEecCCCCHHHHHHHHHHHhcccccccccccccCCCCCcCC
Q 028124 52 PGLPMIVCCSSR--------DELDAVCSAVSNL-ADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETG 122 (213)
Q Consensus 52 ~~~~~IIF~~~~--------~~~~~l~~~L~~~-~~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~~~~~~~~~~~~~~~~~ 122 (213)
.+.+++|||+.. ..++.+++.|... +++.+..+||+|++++|..++++|++|+
T Consensus 447 ~g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~------------------ 508 (630)
T TIGR00643 447 KGRQAYVVYPLIEESEKLDLKAAEALYERLKKAFPKYNVGLLHGRMKSDEKEAVMEEFREGE------------------ 508 (630)
T ss_pred hCCcEEEEEccccccccchHHHHHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHHcCC------------------
Confidence 468999999875 4577788888753 4478999999999999999999999985
Q ss_pred CCCCceeEEEEeCCCCCcCcCCCCCCCCCEEEEecCCC-ChHHHHHhhccc--cCCCCeEEEEE
Q 028124 123 KDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPT-KKETYIRRMTTC--LAADGSVINIV 183 (213)
Q Consensus 123 ~~~~~~~iLV~Td~~~~~~~rGld~~~v~~VI~yd~P~-~~~~yi~R~GR~--~~~~g~~i~~~ 183 (213)
.++||||++ +++|+|+|++++||+|+.|+ ..+.|.||+||+ +|+.|.|+.+.
T Consensus 509 -----~~ILVaT~v----ie~GvDiP~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~il~~ 563 (630)
T TIGR00643 509 -----VDILVATTV----IEVGVDVPNATVMVIEDAERFGLSQLHQLRGRVGRGDHQSYCLLVY 563 (630)
T ss_pred -----CCEEEECce----eecCcccCCCcEEEEeCCCcCCHHHHHHHhhhcccCCCCcEEEEEE
Confidence 999999999 99999999999999999997 567788899996 56779999998
No 60
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=99.74 E-value=5.4e-17 Score=144.29 Aligned_cols=117 Identities=21% Similarity=0.318 Sum_probs=96.5
Q ss_pred hHHHHHHHHHHHhhcCCCCCCcEEEEeCchHHHHHHHHHHhccC-CceEEEecCCCCHHHHHH----HHHHHhccccccc
Q 028124 34 FKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLA-DISFSSLHSDLAETERTL----ILEEFRHTAMKWN 108 (213)
Q Consensus 34 ~K~~~L~~ll~~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~-~~~~~~lhg~~~~~~R~~----~l~~Fr~g~~~~~ 108 (213)
.|.+.+.++++.+ ..+.++|||||+++.|+.+++.|++.+ ...+..+||++++.+|.+ ++++|+++.
T Consensus 207 ~~~~~l~~l~~~~----~~~~~~lVf~~t~~~~~~~~~~L~~~~~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~~---- 278 (358)
T TIGR01587 207 GEISSLERLLEFI----KKGGKIAIIVNTVDRAQEFYQQLKENAPEEEIMLLHSRFTEKDRAKKEAELLEEMKKNE---- 278 (358)
T ss_pred cCHHHHHHHHHHh----hCCCeEEEEECCHHHHHHHHHHHHhhcCCCeEEEEECCCCHHHHHHHHHHHHHHhcCCC----
Confidence 4777888887652 346899999999999999999998764 136999999999999976 488999974
Q ss_pred ccccccCCCCCcCCCCCCceeEEEEeCCCCCcCcCCCCCCCCCEEEEecCCCChHHHHHhhccccC--C-C---CeEEEE
Q 028124 109 QKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLA--A-D---GSVINI 182 (213)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~rGld~~~v~~VI~yd~P~~~~~yi~R~GR~~~--~-~---g~~i~~ 182 (213)
.++||||++ +++|+|++ +++||+++.| +++|+||+||+++ + . |.++.+
T Consensus 279 -------------------~~ilvaT~~----~~~GiDi~-~~~vi~~~~~--~~~~iqr~GR~gR~g~~~~~~~~~~v~ 332 (358)
T TIGR01587 279 -------------------KFVIVATQV----IEASLDIS-ADVMITELAP--IDSLIQRLGRLHRYGRKNGENFEVYII 332 (358)
T ss_pred -------------------CeEEEECcc----hhceeccC-CCEEEEcCCC--HHHHHHHhccccCCCCCCCCCCeEEEE
Confidence 899999999 99999995 8999999887 7899999999743 2 2 366666
Q ss_pred Ee
Q 028124 183 VV 184 (213)
Q Consensus 183 ~~ 184 (213)
..
T Consensus 333 ~~ 334 (358)
T TIGR01587 333 TI 334 (358)
T ss_pred ee
Confidence 54
No 61
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=99.73 E-value=3.7e-17 Score=157.26 Aligned_cols=127 Identities=14% Similarity=0.113 Sum_probs=109.3
Q ss_pred EEecCcchHHHHHHHHHHHhhcCCCCCCcEEEEeCchHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhccccc
Q 028124 27 VAVDRLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMK 106 (213)
Q Consensus 27 ~~~~~~~~K~~~L~~ll~~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~ 106 (213)
++....+ |+..+.+.+.... ..+.++||||+|++.++.++..|.+.| +.+..+||++.+.++..+.+.|+.
T Consensus 402 i~~~~~~-K~~ai~~~i~~~~---~~~~pvLIft~s~~~se~ls~~L~~~g-i~~~~L~a~~~~~E~~ii~~ag~~---- 472 (762)
T TIGR03714 402 IYATLPE-KLMATLEDVKEYH---ETGQPVLLITGSVEMSEIYSELLLREG-IPHNLLNAQNAAKEAQIIAEAGQK---- 472 (762)
T ss_pred EEECHHH-HHHHHHHHHHHHh---hCCCCEEEEECcHHHHHHHHHHHHHCC-CCEEEecCCChHHHHHHHHHcCCC----
Confidence 4455544 9999999887632 357899999999999999999999987 899999999999888777766665
Q ss_pred ccccccccCCCCCcCCCCCCceeEEEEeCCCCCcCcCCCCCC---------CCCEEEEecCCCChHHHHHhhccc--cCC
Q 028124 107 WNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAI---------SARVLINYELPTKKETYIRRMTTC--LAA 175 (213)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~rGld~~---------~v~~VI~yd~P~~~~~yi~R~GR~--~~~ 175 (213)
..|+||||+ ++||+|++ ++.+|++|++|....+ +||+||+ .|.
T Consensus 473 ---------------------g~VlIATdm----AgRGtDI~l~~~v~~~GGL~vIit~~~ps~rid-~qr~GRtGRqG~ 526 (762)
T TIGR03714 473 ---------------------GAVTVATSM----AGRGTDIKLGKGVAELGGLAVIGTERMENSRVD-LQLRGRSGRQGD 526 (762)
T ss_pred ---------------------CeEEEEccc----cccccCCCCCccccccCCeEEEEecCCCCcHHH-HHhhhcccCCCC
Confidence 459999999 99999999 9999999999998777 9999997 577
Q ss_pred CCeEEEEEeCchh
Q 028124 176 DGSVINIVVGGEV 188 (213)
Q Consensus 176 ~g~~i~~~~~~e~ 188 (213)
+|.+++|++.+|.
T Consensus 527 ~G~s~~~is~eD~ 539 (762)
T TIGR03714 527 PGSSQFFVSLEDD 539 (762)
T ss_pred ceeEEEEEccchh
Confidence 8999999987654
No 62
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=99.72 E-value=6.4e-17 Score=157.00 Aligned_cols=140 Identities=19% Similarity=0.246 Sum_probs=100.3
Q ss_pred CCceEEEEEecCcchHHHHHHHHHHHhhcCCCCCCcEEEEeCchHHHHHHHHHHhccCCceEEEecCCCCHHHHH-----
Q 028124 20 SQPRHFYVAVDRLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERT----- 94 (213)
Q Consensus 20 ~~i~~~~~~~~~~~~K~~~L~~ll~~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~lhg~~~~~~R~----- 94 (213)
.++.|+ +.++... |+..+...+..+.. ..++++||||||++.|+.+++.|.+.+ + ..+||+|++.+|.
T Consensus 243 ~ki~q~-v~v~~e~-Kl~~lv~~L~~ll~--e~g~~vLVF~NTv~~Aq~L~~~L~~~g-~--~lLHG~m~q~dR~~~~~~ 315 (844)
T TIGR02621 243 KKIVKL-VPPSDEK-FLSTMVKELNLLMK--DSGGAILVFCRTVKHVRKVFAKLPKEK-F--ELLTGTLRGAERDDLVKK 315 (844)
T ss_pred cceEEE-EecChHH-HHHHHHHHHHHHHh--hCCCcEEEEECCHHHHHHHHHHHHhcC-C--eEeeCCCCHHHHhhHHHH
Confidence 455664 3444433 66555554433222 356799999999999999999999876 4 8999999999999
Q ss_pred HHHHHHhcccccccccccccCCCCCcCCCCCCceeEEEEeCCCCCcCcCCCCCCCCCEEEEecCCCChHHHHHhhcccc-
Q 028124 95 LILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCL- 173 (213)
Q Consensus 95 ~~l~~Fr~g~~~~~~~~~~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~rGld~~~v~~VI~yd~P~~~~~yi~R~GR~~- 173 (213)
+++++|+++.. +|+ +... .++..+||||++ ++||+|++. ++|||+..| .++|+||+||++
T Consensus 316 ~il~~Fk~~~~---------~g~--~~~~-~~g~~ILVATdV----aerGLDId~-d~VI~d~aP--~esyIQRiGRtgR 376 (844)
T TIGR02621 316 EIFNRFLPQML---------SGS--RARP-QQGTVYLVCTSA----GEVGVNISA-DHLVCDLAP--FESMQQRFGRVNR 376 (844)
T ss_pred HHHHHHhcccc---------ccc--cccc-cccceEEeccch----hhhcccCCc-ceEEECCCC--HHHHHHHhcccCC
Confidence 88999987210 000 0000 112689999999 999999986 899998887 699999999973
Q ss_pred -CC-CCeEEEEEeC
Q 028124 174 -AA-DGSVINIVVG 185 (213)
Q Consensus 174 -~~-~g~~i~~~~~ 185 (213)
|+ .+..++++..
T Consensus 377 ~G~~~~~~i~vv~~ 390 (844)
T TIGR02621 377 FGELQACQIAVVHL 390 (844)
T ss_pred CCCCCCceEEEEee
Confidence 33 3555676643
No 63
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.71 E-value=2.5e-17 Score=115.70 Aligned_cols=75 Identities=27% Similarity=0.425 Sum_probs=70.4
Q ss_pred HHhccCCceEEEecCCCCHHHHHHHHHHHhcccccccccccccCCCCCcCCCCCCceeEEEEeCCCCCcCcCCCCCCCCC
Q 028124 72 AVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISAR 151 (213)
Q Consensus 72 ~L~~~~~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~~~~~~~~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~rGld~~~v~ 151 (213)
.|...+ +.+..+||++++.+|..++++|+++. ..+||||++ +++|+|+|+++
T Consensus 2 ~L~~~~-~~~~~i~~~~~~~~r~~~~~~f~~~~-----------------------~~vli~t~~----~~~Gid~~~~~ 53 (78)
T PF00271_consen 2 FLEKKG-IKVAIIHGDMSQKERQEILKKFNSGE-----------------------IRVLIATDI----LGEGIDLPDAS 53 (78)
T ss_dssp HHHHTT-SSEEEESTTSHHHHHHHHHHHHHTTS-----------------------SSEEEESCG----GTTSSTSTTES
T ss_pred ChHHCC-CcEEEEECCCCHHHHHHHHHHhhccC-----------------------ceEEEeecc----ccccccccccc
Confidence 566666 89999999999999999999999985 799999999 99999999999
Q ss_pred EEEEecCCCChHHHHHhhccccC
Q 028124 152 VLINYELPTKKETYIRRMTTCLA 174 (213)
Q Consensus 152 ~VI~yd~P~~~~~yi~R~GR~~~ 174 (213)
+||+|++|++...|+|++||+++
T Consensus 54 ~vi~~~~~~~~~~~~Q~~GR~~R 76 (78)
T PF00271_consen 54 HVIFYDPPWSPEEYIQRIGRAGR 76 (78)
T ss_dssp EEEESSSESSHHHHHHHHTTSST
T ss_pred cccccccCCCHHHHHHHhhcCCC
Confidence 99999999999999999999865
No 64
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.70 E-value=1.7e-16 Score=155.81 Aligned_cols=157 Identities=20% Similarity=0.240 Sum_probs=128.1
Q ss_pred CCCCCCCCCCCCCCCCceEEEEEecCcchHHHHHHHHHHHhhcCCCCCCcEEEEeCchHHHHHHHHHHhccCCceEEEec
Q 028124 6 VESPCPPCQSPSHFSQPRHFYVAVDRLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLH 85 (213)
Q Consensus 6 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~K~~~L~~ll~~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~lh 85 (213)
+.. |....+...++++...+.. +...+..-.+...++. ..+.+..||||.++.+|+.++..|.+.+ +++..+|
T Consensus 444 l~~-~~~~~~sfnR~NL~yeV~~-k~~~~~~~~~~~~~~~----~~~~~s~IIYC~sr~~ce~vs~~L~~~~-~~a~~YH 516 (941)
T KOG0351|consen 444 LRN-PELFKSSFNRPNLKYEVSP-KTDKDALLDILEESKL----RHPDQSGIIYCLSRKECEQVSAVLRSLG-KSAAFYH 516 (941)
T ss_pred CCC-cceecccCCCCCceEEEEe-ccCccchHHHHHHhhh----cCCCCCeEEEeCCcchHHHHHHHHHHhc-hhhHhhh
Confidence 444 3345566777776554433 2212233344444444 5678999999999999999999999998 8999999
Q ss_pred CCCCHHHHHHHHHHHhcccccccccccccCCCCCcCCCCCCceeEEEEeCCCCCcCcCCCCCCCCCEEEEecCCCChHHH
Q 028124 86 SDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETY 165 (213)
Q Consensus 86 g~~~~~~R~~~l~~Fr~g~~~~~~~~~~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~rGld~~~v~~VI~yd~P~~~~~y 165 (213)
++|++.+|..+.++|..++ ++|+|||=+ ++.|||.+||+.||||.+|.+.+.|
T Consensus 517 AGl~~~~R~~Vq~~w~~~~-----------------------~~VivATVA----FGMGIdK~DVR~ViH~~lPks~E~Y 569 (941)
T KOG0351|consen 517 AGLPPKERETVQKAWMSDK-----------------------IRVIVATVA----FGMGIDKPDVRFVIHYSLPKSFEGY 569 (941)
T ss_pred cCCCHHHHHHHHHHHhcCC-----------------------CeEEEEEee----ccCCCCCCceeEEEECCCchhHHHH
Confidence 9999999999999999984 999999999 9999999999999999999999999
Q ss_pred HHhhcccc--CCCCeEEEEEeCchhHHHHHHHH
Q 028124 166 IRRMTTCL--AADGSVINIVVGGEVVTLRSMEE 196 (213)
Q Consensus 166 i~R~GR~~--~~~g~~i~~~~~~e~~~~~~le~ 196 (213)
.|-+||+| |....|+.|+...|...++.+-.
T Consensus 570 YQE~GRAGRDG~~s~C~l~y~~~D~~~l~~ll~ 602 (941)
T KOG0351|consen 570 YQEAGRAGRDGLPSSCVLLYGYADISELRRLLT 602 (941)
T ss_pred HHhccccCcCCCcceeEEecchhHHHHHHHHHH
Confidence 99999974 66789999999888777766644
No 65
>PRK02362 ski2-like helicase; Provisional
Probab=99.70 E-value=1.7e-16 Score=154.11 Aligned_cols=108 Identities=20% Similarity=0.264 Sum_probs=94.2
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhccCC-----------------------------------ceEEEecCCCCHHHHHHH
Q 028124 52 PGLPMIVCCSSRDELDAVCSAVSNLAD-----------------------------------ISFSSLHSDLAETERTLI 96 (213)
Q Consensus 52 ~~~~~IIF~~~~~~~~~l~~~L~~~~~-----------------------------------~~~~~lhg~~~~~~R~~~ 96 (213)
.++++||||++++.|+.++..|..... ..+..+||+|++.+|..+
T Consensus 242 ~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~gva~hHagl~~~eR~~v 321 (737)
T PRK02362 242 EGGQCLVFVSSRRNAEGFAKRAASALKKTLTAAERAELAELAEEIREVSDTETSKDLADCVAKGAAFHHAGLSREHRELV 321 (737)
T ss_pred cCCCeEEEEeCHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhccCccccHHHHHHHHhCEEeecCCCCHHHHHHH
Confidence 467999999999999999888864310 247889999999999999
Q ss_pred HHHHhcccccccccccccCCCCCcCCCCCCceeEEEEeCCCCCcCcCCCCCCCCCEEEE----ec-----CCCChHHHHH
Q 028124 97 LEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLIN----YE-----LPTKKETYIR 167 (213)
Q Consensus 97 l~~Fr~g~~~~~~~~~~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~rGld~~~v~~VI~----yd-----~P~~~~~yi~ 167 (213)
.+.|++|. +++||||+. +++|+|+|.+++||+ || .|.+..+|.|
T Consensus 322 e~~Fr~G~-----------------------i~VLvaT~t----la~GvnlPa~~VVI~~~~~yd~~~g~~~~s~~~y~Q 374 (737)
T PRK02362 322 EDAFRDRL-----------------------IKVISSTPT----LAAGLNLPARRVIIRDYRRYDGGAGMQPIPVLEYHQ 374 (737)
T ss_pred HHHHHcCC-----------------------CeEEEechh----hhhhcCCCceEEEEecceeecCCCCceeCCHHHHHH
Confidence 99999985 999999999 999999999999998 87 6889999999
Q ss_pred hhccccCC----CCeEEEEEeCc
Q 028124 168 RMTTCLAA----DGSVINIVVGG 186 (213)
Q Consensus 168 R~GR~~~~----~g~~i~~~~~~ 186 (213)
|+||+|+. .|.++.++...
T Consensus 375 m~GRAGR~g~d~~G~~ii~~~~~ 397 (737)
T PRK02362 375 MAGRAGRPGLDPYGEAVLLAKSY 397 (737)
T ss_pred HhhcCCCCCCCCCceEEEEecCc
Confidence 99998643 38999998764
No 66
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=99.69 E-value=7.6e-16 Score=147.66 Aligned_cols=127 Identities=13% Similarity=0.112 Sum_probs=111.3
Q ss_pred CcchHHHHHHHHHHHhhcCCCCCCcEEEEeCchHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhccccccccc
Q 028124 31 RLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQK 110 (213)
Q Consensus 31 ~~~~K~~~L~~ll~~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~~~~~ 110 (213)
....|+..+.+.+.... ..+.|+||||+|+..++.++..|.+.| +....+|++ +.+|...+..|+.+
T Consensus 386 t~~~k~~ai~~~i~~~~---~~grpvLV~t~si~~se~ls~~L~~~g-i~~~~Lna~--q~~rEa~ii~~ag~------- 452 (745)
T TIGR00963 386 TEEEKWKAVVDEIKERH---AKGQPVLVGTTSVEKSELLSNLLKERG-IPHNVLNAK--NHEREAEIIAQAGR------- 452 (745)
T ss_pred CHHHHHHHHHHHHHHHH---hcCCCEEEEeCcHHHHHHHHHHHHHcC-CCeEEeeCC--hHHHHHHHHHhcCC-------
Confidence 34459988888775532 468999999999999999999999998 899999998 78999999999987
Q ss_pred ccccCCCCCcCCCCCCceeEEEEeCCCCCcCcCCCCCCC-------CCEEEEecCCCChHHHHHhhccc--cCCCCeEEE
Q 028124 111 VTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAIS-------ARVLINYELPTKKETYIRRMTTC--LAADGSVIN 181 (213)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~rGld~~~-------v~~VI~yd~P~~~~~yi~R~GR~--~~~~g~~i~ 181 (213)
+..|+|||++ ++||+|++. .-+||+++.|.+...|.||.||+ .|.+|.+..
T Consensus 453 ----------------~g~VtIATnm----AgRGtDI~l~~V~~~GGl~VI~t~~p~s~ri~~q~~GRtGRqG~~G~s~~ 512 (745)
T TIGR00963 453 ----------------KGAVTIATNM----AGRGTDIKLEEVKELGGLYVIGTERHESRRIDNQLRGRSGRQGDPGSSRF 512 (745)
T ss_pred ----------------CceEEEEecc----ccCCcCCCccchhhcCCcEEEecCCCCcHHHHHHHhccccCCCCCcceEE
Confidence 4999999999 999999998 55999999999999999999997 577899999
Q ss_pred EEeCchhHH
Q 028124 182 IVVGGEVVT 190 (213)
Q Consensus 182 ~~~~~e~~~ 190 (213)
|++.+|.-.
T Consensus 513 ~ls~eD~l~ 521 (745)
T TIGR00963 513 FLSLEDNLM 521 (745)
T ss_pred EEeccHHHH
Confidence 999876533
No 67
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=99.69 E-value=3.8e-16 Score=148.66 Aligned_cols=132 Identities=20% Similarity=0.296 Sum_probs=109.8
Q ss_pred cCcchHHHHHHHHHHHhhcCCCCCCcEEEEeCchHHHHHHHHHHhcc--CCceEEEecC--------CCCHHHHHHHHHH
Q 028124 30 DRLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNL--ADISFSSLHS--------DLAETERTLILEE 99 (213)
Q Consensus 30 ~~~~~K~~~L~~ll~~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~--~~~~~~~lhg--------~~~~~~R~~~l~~ 99 (213)
+.++.|++.|.+.|.+... ..+..++||||.++..|+.|..+|... ..++...+-| +|++.++.+++++
T Consensus 391 ~~~npkle~l~~~l~e~f~-~~~dsR~IIFve~R~sa~~l~~~l~~~~~~~ir~~~fiGq~~s~~~~gmtqk~Q~evl~~ 469 (746)
T KOG0354|consen 391 PKENPKLEKLVEILVEQFE-QNPDSRTIIFVETRESALALKKWLLQLHELGIKAEIFIGQGKSTQSTGMTQKEQKEVLDK 469 (746)
T ss_pred CccChhHHHHHHHHHHHhh-cCCCccEEEEEehHHHHHHHHHHHHhhhhcccccceeeeccccccccccCHHHHHHHHHH
Confidence 3456799999999977555 577899999999999999999999732 1144444433 6999999999999
Q ss_pred HhcccccccccccccCCCCCcCCCCCCceeEEEEeCCCCCcCcCCCCCCCCCEEEEecCCCChHHHHHhhccccCCCCeE
Q 028124 100 FRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAADGSV 179 (213)
Q Consensus 100 Fr~g~~~~~~~~~~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~rGld~~~v~~VI~yd~P~~~~~yi~R~GR~~~~~g~~ 179 (213)
|+.|+ +++||||++ +++|+|+++|+.||-||.-.++...+||+||+-.+.|.+
T Consensus 470 Fr~G~-----------------------~NvLVATSV----~EEGLDI~ec~lVIcYd~~snpIrmIQrrGRgRa~ns~~ 522 (746)
T KOG0354|consen 470 FRDGE-----------------------INVLVATSV----AEEGLDIGECNLVICYDYSSNPIRMVQRRGRGRARNSKC 522 (746)
T ss_pred HhCCC-----------------------ccEEEEecc----hhccCCcccccEEEEecCCccHHHHHHHhccccccCCeE
Confidence 99996 999999999 999999999999999999999999999999943455888
Q ss_pred EEEEeCchhH
Q 028124 180 INIVVGGEVV 189 (213)
Q Consensus 180 i~~~~~~e~~ 189 (213)
+.+.+..+..
T Consensus 523 vll~t~~~~~ 532 (746)
T KOG0354|consen 523 VLLTTGSEVI 532 (746)
T ss_pred EEEEcchhHH
Confidence 8888754433
No 68
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=99.66 E-value=8.7e-16 Score=137.60 Aligned_cols=116 Identities=16% Similarity=0.193 Sum_probs=89.4
Q ss_pred CCceEEEEEecCcchHHHHHHHHHHHhhcC--CCCCCcEEEEeCchHHHHHHHHHHhccC-CceEEEecCCCCHHHHHHH
Q 028124 20 SQPRHFYVAVDRLQFKMETLVELLHLVVAG--RRPGLPMIVCCSSRDELDAVCSAVSNLA-DISFSSLHSDLAETERTLI 96 (213)
Q Consensus 20 ~~i~~~~~~~~~~~~K~~~L~~ll~~~~~~--~~~~~~~IIF~~~~~~~~~l~~~L~~~~-~~~~~~lhg~~~~~~R~~~ 96 (213)
+.+.+.+.. .. ..|.+.+..+++.+... ..++.++||||||++.+++++..|+..+ ++.+..+||.+++.+|.+.
T Consensus 239 ~~i~~~~~~-~~-~~~~~~l~~l~~~i~~~~~~~~~~k~LIf~nt~~~~~~l~~~L~~~~~~~~~~~l~g~~~~~~R~~~ 316 (357)
T TIGR03158 239 PPVELELIP-AP-DFKEEELSELAEEVIERFRQLPGERGAIILDSLDEVNRLSDLLQQQGLGDDIGRITGFAPKKDRERA 316 (357)
T ss_pred cceEEEEEe-CC-chhHHHHHHHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHhhhCCCceEEeeecCCCHHHHHHh
Confidence 357776655 33 34777666665543210 1356799999999999999999998754 2578899999999988643
Q ss_pred HHHHhcccccccccccccCCCCCcCCCCCCceeEEEEeCCCCCcCcCCCCCCCCCEEEEecCCCChHHHHHhhcccc
Q 028124 97 LEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCL 173 (213)
Q Consensus 97 l~~Fr~g~~~~~~~~~~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~rGld~~~v~~VI~yd~P~~~~~yi~R~GR~~ 173 (213)
+ +.++||||++ ++||+|++.+ +|| ++ |.+.++|+||+||+|
T Consensus 317 ------~-----------------------~~~iLVaTdv----~~rGiDi~~~-~vi-~~-p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 317 ------M-----------------------QFDILLGTST----VDVGVDFKRD-WLI-FS-ARDAAAFWQRLGRLG 357 (357)
T ss_pred ------c-----------------------cCCEEEEecH----HhcccCCCCc-eEE-EC-CCCHHHHhhhcccCC
Confidence 2 2789999999 9999999986 666 56 899999999999974
No 69
>PHA02558 uvsW UvsW helicase; Provisional
Probab=99.66 E-value=1.1e-15 Score=142.57 Aligned_cols=120 Identities=12% Similarity=0.105 Sum_probs=100.7
Q ss_pred hHHHHHHHHHHHhhcCCCCCCcEEEEeCchHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhcccccccccccc
Q 028124 34 FKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTE 113 (213)
Q Consensus 34 ~K~~~L~~ll~~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~~~~~~~~ 113 (213)
.|.+.+.+++..+. ..+.+++|||++.++++.|++.|.+.+ +.+..+||+|+.++|..+++.|+.|.
T Consensus 328 ~Rn~~I~~~~~~~~---~~~~~~lV~~~~~~h~~~L~~~L~~~g-~~v~~i~G~~~~~eR~~i~~~~~~~~--------- 394 (501)
T PHA02558 328 KRNKWIANLALKLA---KKGENTFVMFKYVEHGKPLYEMLKKVY-DKVYYVSGEVDTEDRNEMKKIAEGGK--------- 394 (501)
T ss_pred HHHHHHHHHHHHHH---hcCCCEEEEEEEHHHHHHHHHHHHHcC-CCEEEEeCCCCHHHHHHHHHHHhCCC---------
Confidence 36666676665533 245788888899999999999999987 79999999999999999999999874
Q ss_pred cCCCCCcCCCCCCceeEEEEe-CCCCCcCcCCCCCCCCCEEEEecCCCChHHHHHhhccccCCC-----CeEEEEEe
Q 028124 114 QSGDESETGKDEHKSHMIVVT-DACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAAD-----GSVINIVV 184 (213)
Q Consensus 114 ~~~~~~~~~~~~~~~~iLV~T-d~~~~~~~rGld~~~v~~VI~yd~P~~~~~yi~R~GR~~~~~-----g~~i~~~~ 184 (213)
..+|||| ++ +++|+|+|++++||++++|.+...|+||+||+++.. ..++.|+.
T Consensus 395 --------------~~vLvaT~~~----l~eG~Dip~ld~vIl~~p~~s~~~~~QriGR~~R~~~~K~~~~i~D~vD 453 (501)
T PHA02558 395 --------------GIIIVASYGV----FSTGISIKNLHHVIFAHPSKSKIIVLQSIGRVLRKHGSKSIATVWDIID 453 (501)
T ss_pred --------------CeEEEEEcce----eccccccccccEEEEecCCcchhhhhhhhhccccCCCCCceEEEEEeec
Confidence 7899998 89 999999999999999999999999999999974321 35555664
No 70
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.66 E-value=1.4e-15 Score=146.95 Aligned_cols=124 Identities=13% Similarity=0.141 Sum_probs=109.4
Q ss_pred cchHHHHHHHHHHHhhcCCCCCCcEEEEeCchHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhcccccccccc
Q 028124 32 LQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKV 111 (213)
Q Consensus 32 ~~~K~~~L~~ll~~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~~~~~~ 111 (213)
...|+..+.+.+.... ..+.|+||||+|+..++.|+..|.+.+ +....+|+++...++..+.+.++.|
T Consensus 422 ~~~K~~al~~~i~~~~---~~g~pvLI~t~si~~se~ls~~L~~~g-i~~~~Lna~~~~~Ea~ii~~ag~~g-------- 489 (796)
T PRK12906 422 LDSKFNAVVKEIKERH---AKGQPVLVGTVAIESSERLSHLLDEAG-IPHAVLNAKNHAKEAEIIMNAGQRG-------- 489 (796)
T ss_pred HHHHHHHHHHHHHHHH---hCCCCEEEEeCcHHHHHHHHHHHHHCC-CCeeEecCCcHHHHHHHHHhcCCCc--------
Confidence 3459999999886532 468999999999999999999999997 8999999999988888888888775
Q ss_pred cccCCCCCcCCCCCCceeEEEEeCCCCCcCcCCCCC---CCCC-----EEEEecCCCChHHHHHhhccc--cCCCCeEEE
Q 028124 112 TEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESA---ISAR-----VLINYELPTKKETYIRRMTTC--LAADGSVIN 181 (213)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~rGld~---~~v~-----~VI~yd~P~~~~~yi~R~GR~--~~~~g~~i~ 181 (213)
.|+|||++ ++||+|+ ++|. +||+++.|.+...|.||.||+ .|.+|.++.
T Consensus 490 -----------------~VtIATnm----AGRGtDI~l~~~V~~~GGLhVI~te~pes~ri~~Ql~GRtGRqG~~G~s~~ 548 (796)
T PRK12906 490 -----------------AVTIATNM----AGRGTDIKLGPGVKELGGLAVIGTERHESRRIDNQLRGRSGRQGDPGSSRF 548 (796)
T ss_pred -----------------eEEEEecc----ccCCCCCCCCcchhhhCCcEEEeeecCCcHHHHHHHhhhhccCCCCcceEE
Confidence 39999999 9999999 4899 999999999999999999997 577899999
Q ss_pred EEeCchh
Q 028124 182 IVVGGEV 188 (213)
Q Consensus 182 ~~~~~e~ 188 (213)
|++.+|.
T Consensus 549 ~~sleD~ 555 (796)
T PRK12906 549 YLSLEDD 555 (796)
T ss_pred EEeccch
Confidence 9987654
No 71
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.66 E-value=1.9e-15 Score=145.34 Aligned_cols=120 Identities=18% Similarity=0.183 Sum_probs=100.0
Q ss_pred hHHHHHHHHHHHhhcCCCCCCcEEEEeCchHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhcccccccccccc
Q 028124 34 FKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTE 113 (213)
Q Consensus 34 ~K~~~L~~ll~~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~~~~~~~~ 113 (213)
.|++.+..+++.. +..+.++||||++...++.++..|. +..+||++++.+|.+++++|+++.
T Consensus 480 ~K~~~~~~Li~~h---e~~g~kiLVF~~~~~~l~~~a~~L~------~~~I~G~ts~~ER~~il~~Fr~~~--------- 541 (732)
T TIGR00603 480 NKFRACQFLIRFH---EQRGDKIIVFSDNVFALKEYAIKLG------KPFIYGPTSQQERMQILQNFQHNP--------- 541 (732)
T ss_pred HHHHHHHHHHHHH---hhcCCeEEEEeCCHHHHHHHHHHcC------CceEECCCCHHHHHHHHHHHHhCC---------
Confidence 3888888888752 1367899999999999999999882 345899999999999999999752
Q ss_pred cCCCCCcCCCCCCceeEEEEeCCCCCcCcCCCCCCCCCEEEEecCC-CChHHHHHhhccccC--CCC-------eEEEEE
Q 028124 114 QSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELP-TKKETYIRRMTTCLA--ADG-------SVINIV 183 (213)
Q Consensus 114 ~~~~~~~~~~~~~~~~iLV~Td~~~~~~~rGld~~~v~~VI~yd~P-~~~~~yi~R~GR~~~--~~g-------~~i~~~ 183 (213)
.+++||+|++ +.+|+|+|++++||+++.| .+...|+||+||.++ ..| ..|+|+
T Consensus 542 -------------~i~vLv~SkV----gdeGIDlP~a~vvI~~s~~~gS~~q~iQRlGRilR~~~~~~~~~~~A~fY~lV 604 (732)
T TIGR00603 542 -------------KVNTIFLSKV----GDTSIDLPEANVLIQISSHYGSRRQEAQRLGRILRAKKGSDAEEYNAFFYSLV 604 (732)
T ss_pred -------------CccEEEEecc----cccccCCCCCCEEEEeCCCCCCHHHHHHHhcccccCCCCCccccccceEEEEe
Confidence 4899999999 9999999999999999998 499999999999632 223 448899
Q ss_pred eCchh
Q 028124 184 VGGEV 188 (213)
Q Consensus 184 ~~~e~ 188 (213)
+.+..
T Consensus 605 s~dT~ 609 (732)
T TIGR00603 605 SKDTQ 609 (732)
T ss_pred cCCch
Confidence 87633
No 72
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=99.64 E-value=2.2e-15 Score=151.48 Aligned_cols=137 Identities=12% Similarity=0.232 Sum_probs=106.2
Q ss_pred CceEEEEEecCcc-----hHHHHHHHHHHHhhcCCCCCCcEEEEeCchHHHHHHHHHHhccC--CceEEEecCCCCHHHH
Q 028124 21 QPRHFYVAVDRLQ-----FKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLA--DISFSSLHSDLAETER 93 (213)
Q Consensus 21 ~i~~~~~~~~~~~-----~K~~~L~~ll~~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~--~~~~~~lhg~~~~~~R 93 (213)
.+.++|..+.... +++..+.+.+..+.. ...+++||||++..+++.+++.|.+.+ ...+..+||+|++++|
T Consensus 251 pVei~y~p~~~~~~~~~~d~l~~ll~~V~~l~~--~~~GdILVFLpg~~EIe~lae~L~~~~~~~~~VlpLhg~Ls~~eQ 328 (1294)
T PRK11131 251 PVEVRYRPIVEEADDTERDQLQAIFDAVDELGR--EGPGDILIFMSGEREIRDTADALNKLNLRHTEILPLYARLSNSEQ 328 (1294)
T ss_pred cceEEEeecccccchhhHHHHHHHHHHHHHHhc--CCCCCEEEEcCCHHHHHHHHHHHHhcCCCcceEeecccCCCHHHH
Confidence 4778887764322 234444444333222 356789999999999999999998764 2347889999999999
Q ss_pred HHHHHHHhcccccccccccccCCCCCcCCCCCCceeEEEEeCCCCCcCcCCCCCCCCCEEEEec---------------C
Q 028124 94 TLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYE---------------L 158 (213)
Q Consensus 94 ~~~l~~Fr~g~~~~~~~~~~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~rGld~~~v~~VI~yd---------------~ 158 (213)
..+++. .| +.+|||||++ +++|+|+|++++|||++ +
T Consensus 329 ~~Vf~~--~g-----------------------~rkIIVATNI----AEtSITIpgI~yVID~Gl~k~~~Yd~~~~~~~L 379 (1294)
T PRK11131 329 NRVFQS--HS-----------------------GRRIVLATNV----AETSLTVPGIKYVIDPGTARISRYSYRTKVQRL 379 (1294)
T ss_pred HHHhcc--cC-----------------------CeeEEEeccH----HhhccccCcceEEEECCCccccccccccCcccC
Confidence 998875 33 3899999999 99999999999999985 4
Q ss_pred CC---ChHHHHHhhccccC-CCCeEEEEEeCchh
Q 028124 159 PT---KKETYIRRMTTCLA-ADGSVINIVVGGEV 188 (213)
Q Consensus 159 P~---~~~~yi~R~GR~~~-~~g~~i~~~~~~e~ 188 (213)
|. |.++|.||+||+|+ .+|.||.+++..+.
T Consensus 380 p~~~iSkasa~QRaGRAGR~~~G~c~rLyte~d~ 413 (1294)
T PRK11131 380 PIEPISQASANQRKGRCGRVSEGICIRLYSEDDF 413 (1294)
T ss_pred CeeecCHhhHhhhccccCCCCCcEEEEeCCHHHH
Confidence 43 55899999999865 46999999997654
No 73
>PRK09401 reverse gyrase; Reviewed
Probab=99.64 E-value=1e-15 Score=154.15 Aligned_cols=114 Identities=18% Similarity=0.209 Sum_probs=99.2
Q ss_pred CCCCceEEEEEecCcchHHHHHHHHHHHhhcCCCCCCcEEEEeCchHH---HHHHHHHHhccCCceEEEecCCCCHHHHH
Q 028124 18 HFSQPRHFYVAVDRLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDE---LDAVCSAVSNLADISFSSLHSDLAETERT 94 (213)
Q Consensus 18 ~~~~i~~~~~~~~~~~~K~~~L~~ll~~~~~~~~~~~~~IIF~~~~~~---~~~l~~~L~~~~~~~~~~lhg~~~~~~R~ 94 (213)
...+|.|.|+.++ + |.+.|.++++.+ +.++||||+++.. |+++++.|...| +++..+||+| .
T Consensus 302 ~~rnI~~~yi~~~--~-k~~~L~~ll~~l------~~~~LIFv~t~~~~~~ae~l~~~L~~~g-i~v~~~hg~l-----~ 366 (1176)
T PRK09401 302 YLRNIVDSYIVDE--D-SVEKLVELVKRL------GDGGLIFVPSDKGKEYAEELAEYLEDLG-INAELAISGF-----E 366 (1176)
T ss_pred ccCCceEEEEEcc--c-HHHHHHHHHHhc------CCCEEEEEecccChHHHHHHHHHHHHCC-CcEEEEeCcH-----H
Confidence 4568999998776 3 888888888762 3589999999888 999999999998 8999999999 2
Q ss_pred HHHHHHhcccccccccccccCCCCCcCCCCCCceeEEEE----eCCCCCcCcCCCCCCC-CCEEEEecCCC------ChH
Q 028124 95 LILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVV----TDACLPLLSSGESAIS-ARVLINYELPT------KKE 163 (213)
Q Consensus 95 ~~l~~Fr~g~~~~~~~~~~~~~~~~~~~~~~~~~~iLV~----Td~~~~~~~rGld~~~-v~~VI~yd~P~------~~~ 163 (213)
+.+++|++|+ +++||+ ||+ ++||+|+|+ +++|||||+|. ..+
T Consensus 367 ~~l~~F~~G~-----------------------~~VLVatas~tdv----~aRGIDiP~~IryVI~y~vP~~~~~~~~~~ 419 (1176)
T PRK09401 367 RKFEKFEEGE-----------------------VDVLVGVASYYGV----LVRGIDLPERIRYAIFYGVPKFKFSLEEEL 419 (1176)
T ss_pred HHHHHHHCCC-----------------------CCEEEEecCCCCc----eeecCCCCcceeEEEEeCCCCEEEeccccc
Confidence 3459999995 999999 689 999999999 89999999998 678
Q ss_pred HHHHhhcccc
Q 028124 164 TYIRRMTTCL 173 (213)
Q Consensus 164 ~yi~R~GR~~ 173 (213)
.|.||+||..
T Consensus 420 ~~~~~~~r~~ 429 (1176)
T PRK09401 420 APPFLLLRLL 429 (1176)
T ss_pred cCHHHHHHHH
Confidence 9999999963
No 74
>PRK00254 ski2-like helicase; Provisional
Probab=99.62 E-value=4.5e-15 Score=143.77 Aligned_cols=108 Identities=22% Similarity=0.244 Sum_probs=91.3
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhcc---------------------------------CCceEEEecCCCCHHHHHHHHH
Q 028124 52 PGLPMIVCCSSRDELDAVCSAVSNL---------------------------------ADISFSSLHSDLAETERTLILE 98 (213)
Q Consensus 52 ~~~~~IIF~~~~~~~~~l~~~L~~~---------------------------------~~~~~~~lhg~~~~~~R~~~l~ 98 (213)
.++++||||+|++.|+.++..|... . ..+..+||+|++++|..+.+
T Consensus 237 ~~~~vLVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~-~gv~~hHagl~~~eR~~ve~ 315 (720)
T PRK00254 237 KGKGALVFVNTRRSAEKEALELAKKIKRFLTKPELRALKELADSLEENPTNEKLKKALR-GGVAFHHAGLGRTERVLIED 315 (720)
T ss_pred hCCCEEEEEcChHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCcHHHHHHHh-hCEEEeCCCCCHHHHHHHHH
Confidence 3679999999999999887766421 1 24889999999999999999
Q ss_pred HHhcccccccccccccCCCCCcCCCCCCceeEEEEeCCCCCcCcCCCCCCCCCEEEE-------ecCCC-ChHHHHHhhc
Q 028124 99 EFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLIN-------YELPT-KKETYIRRMT 170 (213)
Q Consensus 99 ~Fr~g~~~~~~~~~~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~rGld~~~v~~VI~-------yd~P~-~~~~yi~R~G 170 (213)
.|++|. +++||||+. +++|+|+|.+++||. |+.|. ...+|.||+|
T Consensus 316 ~F~~G~-----------------------i~VLvaT~t----La~Gvnipa~~vVI~~~~~~~~~~~~~~~~~~~~Qm~G 368 (720)
T PRK00254 316 AFREGL-----------------------IKVITATPT----LSAGINLPAFRVIIRDTKRYSNFGWEDIPVLEIQQMMG 368 (720)
T ss_pred HHHCCC-----------------------CeEEEeCcH----HhhhcCCCceEEEECCceEcCCCCceeCCHHHHHHhhh
Confidence 999985 999999999 999999999999994 66555 4679999999
Q ss_pred cccC----CCCeEEEEEeCch
Q 028124 171 TCLA----ADGSVINIVVGGE 187 (213)
Q Consensus 171 R~~~----~~g~~i~~~~~~e 187 (213)
|+|+ ..|.++.++...+
T Consensus 369 RAGR~~~d~~G~~ii~~~~~~ 389 (720)
T PRK00254 369 RAGRPKYDEVGEAIIVATTEE 389 (720)
T ss_pred ccCCCCcCCCceEEEEecCcc
Confidence 9865 3599999997654
No 75
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=99.60 E-value=8.5e-15 Score=141.79 Aligned_cols=94 Identities=14% Similarity=0.205 Sum_probs=89.3
Q ss_pred CCcEEEEeCchHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhcccccccccccccCCCCCcCCCCCCceeEEE
Q 028124 53 GLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIV 132 (213)
Q Consensus 53 ~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~~~~~~~~~~~~~~~~~~~~~~~~iLV 132 (213)
...++||+||+.+++.++..|++.+...+...||.++.+.|..+-++|++|+ .+++|
T Consensus 253 ~~ttLIF~NTR~~aE~l~~~L~~~~~~~i~~HHgSlSre~R~~vE~~lk~G~-----------------------lravV 309 (814)
T COG1201 253 HRTTLIFTNTRSGAERLAFRLKKLGPDIIEVHHGSLSRELRLEVEERLKEGE-----------------------LKAVV 309 (814)
T ss_pred cCcEEEEEeChHHHHHHHHHHHHhcCCceeeecccccHHHHHHHHHHHhcCC-----------------------ceEEE
Confidence 4689999999999999999999886578999999999999999999999995 99999
Q ss_pred EeCCCCCcCcCCCCCCCCCEEEEecCCCChHHHHHhhcccc
Q 028124 133 VTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCL 173 (213)
Q Consensus 133 ~Td~~~~~~~rGld~~~v~~VI~yd~P~~~~~yi~R~GR~~ 173 (213)
||.. ++-|||+.+++.||+|.-|.+....+||+||+|
T Consensus 310 ~TSS----LELGIDiG~vdlVIq~~SP~sV~r~lQRiGRsg 346 (814)
T COG1201 310 ATSS----LELGIDIGDIDLVIQLGSPKSVNRFLQRIGRAG 346 (814)
T ss_pred Eccc----hhhccccCCceEEEEeCCcHHHHHHhHhccccc
Confidence 9999 999999999999999999999999999999974
No 76
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.60 E-value=9.6e-15 Score=142.69 Aligned_cols=127 Identities=12% Similarity=0.138 Sum_probs=110.1
Q ss_pred cCcchHHHHHHHHHHHhhcCCCCCCcEEEEeCchHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhcccccccc
Q 028124 30 DRLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQ 109 (213)
Q Consensus 30 ~~~~~K~~~L~~ll~~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~~~~ 109 (213)
.....|+..|.+.+.... ..+.++||||+|+..++.|+..|...+ +.+..||+ .+.+|...+..|+.+.
T Consensus 578 ~t~~eK~~Ali~~I~~~~---~~grpVLIft~Sve~sE~Ls~~L~~~g-I~h~vLna--kq~~REa~Iia~AG~~----- 646 (1025)
T PRK12900 578 KTRREKYNAIVLKVEELQ---KKGQPVLVGTASVEVSETLSRMLRAKR-IAHNVLNA--KQHDREAEIVAEAGQK----- 646 (1025)
T ss_pred cCHHHHHHHHHHHHHHHh---hCCCCEEEEeCcHHHHHHHHHHHHHcC-CCceeecC--CHHHhHHHHHHhcCCC-----
Confidence 334449999999997632 367999999999999999999999997 89999997 5789999999999984
Q ss_pred cccccCCCCCcCCCCCCceeEEEEeCCCCCcCcCCCCCC---CCC-----EEEEecCCCChHHHHHhhccc--cCCCCeE
Q 028124 110 KVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAI---SAR-----VLINYELPTKKETYIRRMTTC--LAADGSV 179 (213)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~rGld~~---~v~-----~VI~yd~P~~~~~yi~R~GR~--~~~~g~~ 179 (213)
..|+|||++ ++||+|++ +|. +||+++.|.+...|.||.||+ .|.+|.+
T Consensus 647 ------------------g~VtIATNM----AGRGtDIkl~~~V~~vGGL~VIgterhes~Rid~Ql~GRtGRqGdpGsS 704 (1025)
T PRK12900 647 ------------------GAVTIATNM----AGRGTDIKLGEGVRELGGLFILGSERHESRRIDRQLRGRAGRQGDPGES 704 (1025)
T ss_pred ------------------CeEEEeccC----cCCCCCcCCccchhhhCCceeeCCCCCchHHHHHHHhhhhhcCCCCcce
Confidence 899999999 99999999 554 349999999999999999997 5778999
Q ss_pred EEEEeCchhH
Q 028124 180 INIVVGGEVV 189 (213)
Q Consensus 180 i~~~~~~e~~ 189 (213)
+.|++.+|.-
T Consensus 705 ~ffvSleD~L 714 (1025)
T PRK12900 705 VFYVSLEDEL 714 (1025)
T ss_pred EEEechhHHH
Confidence 9999986653
No 77
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.59 E-value=1e-14 Score=146.88 Aligned_cols=138 Identities=9% Similarity=0.145 Sum_probs=107.2
Q ss_pred CceEEEEEecCc-----chHHHHHHHHHHHhhcCCCCCCcEEEEeCchHHHHHHHHHHhccC--CceEEEecCCCCHHHH
Q 028124 21 QPRHFYVAVDRL-----QFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLA--DISFSSLHSDLAETER 93 (213)
Q Consensus 21 ~i~~~~~~~~~~-----~~K~~~L~~ll~~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~--~~~~~~lhg~~~~~~R 93 (213)
.+..+|...... .++.+.+.+.+..+.. ...+.+|||+++..+++.+++.|.+.+ ++.+..+||+|++++|
T Consensus 244 PVev~Y~~~~~~~~~~~~~~~~~i~~~I~~l~~--~~~GdILVFLpg~~EI~~l~~~L~~~~~~~~~VlpLhg~Ls~~eQ 321 (1283)
T TIGR01967 244 PVEVRYRPLVEEQEDDDLDQLEAILDAVDELFA--EGPGDILIFLPGEREIRDAAEILRKRNLRHTEILPLYARLSNKEQ 321 (1283)
T ss_pred cceeEEecccccccchhhhHHHHHHHHHHHHHh--hCCCCEEEeCCCHHHHHHHHHHHHhcCCCCcEEEeccCCCCHHHH
Confidence 466666654321 1355666666655433 245799999999999999999998653 3678999999999999
Q ss_pred HHHHHHHhcccccccccccccCCCCCcCCCCCCceeEEEEeCCCCCcCcCCCCCCCCCEEEEecCCC-------------
Q 028124 94 TLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPT------------- 160 (213)
Q Consensus 94 ~~~l~~Fr~g~~~~~~~~~~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~rGld~~~v~~VI~yd~P~------------- 160 (213)
.++++. +. ..+|+|||++ +++|+|+|++++||++++++
T Consensus 322 ~~vf~~---~~----------------------~rkIVLATNI----AEtSLTIpgV~yVIDsGl~r~~~yd~~~~~~~L 372 (1283)
T TIGR01967 322 QRVFQP---HS----------------------GRRIVLATNV----AETSLTVPGIHYVIDTGTARISRYSYRTKVQRL 372 (1283)
T ss_pred HHHhCC---CC----------------------CceEEEeccH----HHhccccCCeeEEEeCCCccccccccccCcccc
Confidence 988543 31 3789999999 99999999999999998654
Q ss_pred -----ChHHHHHhhccccCC-CCeEEEEEeCchhH
Q 028124 161 -----KKETYIRRMTTCLAA-DGSVINIVVGGEVV 189 (213)
Q Consensus 161 -----~~~~yi~R~GR~~~~-~g~~i~~~~~~e~~ 189 (213)
|.++|.||+||+|+. +|.||.+++..+..
T Consensus 373 ~~~~ISkasa~QRaGRAGR~~~G~cyRLyte~~~~ 407 (1283)
T TIGR01967 373 PIEPISQASANQRKGRCGRVAPGICIRLYSEEDFN 407 (1283)
T ss_pred CCccCCHHHHHHHhhhhCCCCCceEEEecCHHHHH
Confidence 558999999998654 69999999876543
No 78
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.59 E-value=7.9e-15 Score=102.10 Aligned_cols=79 Identities=28% Similarity=0.460 Sum_probs=73.0
Q ss_pred HHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhcccccccccccccCCCCCcCCCCCCceeEEEEeCCCCCcCcCCCCC
Q 028124 68 AVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESA 147 (213)
Q Consensus 68 ~l~~~L~~~~~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~~~~~~~~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~rGld~ 147 (213)
.+++.|...+ +.+..+||++++++|..+++.|+.+. ..+||+|++ +++|+|+
T Consensus 2 ~l~~~l~~~~-~~~~~~~~~~~~~~r~~~~~~f~~~~-----------------------~~vli~t~~----~~~Gi~~ 53 (82)
T smart00490 2 ELAELLKELG-IKVARLHGGLSQEEREEILEKFNNGK-----------------------IKVLVATDV----AERGLDL 53 (82)
T ss_pred HHHHHHHHCC-CeEEEEECCCCHHHHHHHHHHHHcCC-----------------------CeEEEECCh----hhCCcCh
Confidence 4677787776 79999999999999999999999984 799999999 9999999
Q ss_pred CCCCEEEEecCCCChHHHHHhhccccC
Q 028124 148 ISARVLINYELPTKKETYIRRMTTCLA 174 (213)
Q Consensus 148 ~~v~~VI~yd~P~~~~~yi~R~GR~~~ 174 (213)
+++++||.+++|++...|.|++||+++
T Consensus 54 ~~~~~vi~~~~~~~~~~~~Q~~gR~~R 80 (82)
T smart00490 54 PGVDLVIIYDLPWSPASYIQRIGRAGR 80 (82)
T ss_pred hcCCEEEEeCCCCCHHHHHHhhccccc
Confidence 999999999999999999999999754
No 79
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.55 E-value=1.6e-15 Score=128.94 Aligned_cols=123 Identities=20% Similarity=0.425 Sum_probs=104.9
Q ss_pred CCCCCceEEEEEecCcchHHHHHHHHHHHhhcCCCCCCcEEEEeCchHHHHHHHHHHhccCCceEEEecCCCCHHHHHHH
Q 028124 17 SHFSQPRHFYVAVDRLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLI 96 (213)
Q Consensus 17 ~~~~~i~~~~~~~~~~~~K~~~L~~ll~~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~lhg~~~~~~R~~~ 96 (213)
-+..+++|+|+...+.+ |...|.+||..+ .+.+++||+.+..+ |
T Consensus 253 LtLHGLqQ~YvkLke~e-KNrkl~dLLd~L-----eFNQVvIFvKsv~R-------l----------------------- 296 (387)
T KOG0329|consen 253 LTLHGLQQYYVKLKENE-KNRKLNDLLDVL-----EFNQVVIFVKSVQR-------L----------------------- 296 (387)
T ss_pred hhhhhHHHHHHhhhhhh-hhhhhhhhhhhh-----hhcceeEeeehhhh-------h-----------------------
Confidence 34578999999999887 999999999884 45899999987765 1
Q ss_pred HHHHhcccccccccccccCCCCCcCCCCCCceeEEEEeCCCCCcCcCCCCCCCCCEEEEecCCCChHHHHHhhccc--cC
Q 028124 97 LEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTC--LA 174 (213)
Q Consensus 97 l~~Fr~g~~~~~~~~~~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~rGld~~~v~~VI~yd~P~~~~~yi~R~GR~--~~ 174 (213)
. |. .+ +|+|++ ++||+|+..++.|+|||+|.+.++|+||+||+ .|
T Consensus 297 -~-f~--------------------------kr-~vat~l----fgrgmdiervNi~~NYdmp~~~DtYlHrv~rAgrfG 343 (387)
T KOG0329|consen 297 -S-FQ--------------------------KR-LVATDL----FGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFG 343 (387)
T ss_pred -h-hh--------------------------hh-hHHhhh----hccccCcccceeeeccCCCCCchHHHHHhhhhhccc
Confidence 0 31 33 899999 99999999999999999999999999999997 57
Q ss_pred CCCeEEEEEeC-chhHHHHHHHHHhcccccccCcc
Q 028124 175 ADGSVINIVVG-GEVVTLRSMEESLGLIVAEVPIN 208 (213)
Q Consensus 175 ~~g~~i~~~~~-~e~~~~~~le~~l~~~~~~~~~~ 208 (213)
..|.+|+|+.. ++...+..+...+...+.++|-.
T Consensus 344 tkglaitfvs~e~da~iLn~vqdRf~v~i~eLpde 378 (387)
T KOG0329|consen 344 TKGLAITFVSDENDAKILNPVQDRFEVNIKELPDE 378 (387)
T ss_pred cccceeehhcchhhHHHhchhhHhhhccHhhcCcc
Confidence 88999999975 57788899999888888888854
No 80
>PRK14701 reverse gyrase; Provisional
Probab=99.54 E-value=1.9e-14 Score=148.42 Aligned_cols=112 Identities=13% Similarity=0.181 Sum_probs=94.7
Q ss_pred CCCCCceEEEEEecCcchHHHHHHHHHHHhhcCCCCCCcEEEEeCchHH---HHHHHHHHhccCCceEEEecCCCCHHHH
Q 028124 17 SHFSQPRHFYVAVDRLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDE---LDAVCSAVSNLADISFSSLHSDLAETER 93 (213)
Q Consensus 17 ~~~~~i~~~~~~~~~~~~K~~~L~~ll~~~~~~~~~~~~~IIF~~~~~~---~~~l~~~L~~~~~~~~~~lhg~~~~~~R 93 (213)
.+..++.|.|+.++... | ..|.++++.+ +.+.||||++++. |+++++.|...| +++..+||+ |
T Consensus 302 ~~lr~i~~~yi~~~~~~-k-~~L~~ll~~~------g~~gIVF~~t~~~~e~ae~la~~L~~~G-i~a~~~h~~-----R 367 (1638)
T PRK14701 302 SALRNIVDVYLNPEKII-K-EHVRELLKKL------GKGGLIFVPIDEGAEKAEEIEKYLLEDG-FKIELVSAK-----N 367 (1638)
T ss_pred CCCCCcEEEEEECCHHH-H-HHHHHHHHhC------CCCeEEEEeccccchHHHHHHHHHHHCC-CeEEEecch-----H
Confidence 34568999998876554 5 5677777762 4689999999886 589999999998 899999995 8
Q ss_pred HHHHHHHhcccccccccccccCCCCCcCCCCCCceeEEEEeC----CCCCcCcCCCCCCC-CCEEEEecCCC---ChHHH
Q 028124 94 TLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTD----ACLPLLSSGESAIS-ARVLINYELPT---KKETY 165 (213)
Q Consensus 94 ~~~l~~Fr~g~~~~~~~~~~~~~~~~~~~~~~~~~~iLV~Td----~~~~~~~rGld~~~-v~~VI~yd~P~---~~~~y 165 (213)
..++++|++|+ +++||+|+ + ++||||+|+ |++|||||+|. +.+.|
T Consensus 368 ~~~l~~F~~G~-----------------------~~VLVaT~s~~gv----aaRGIDiP~~Vryvi~~~~Pk~~~~~e~~ 420 (1638)
T PRK14701 368 KKGFDLFEEGE-----------------------IDYLIGVATYYGT----LVRGLDLPERIRFAVFYGVPKFRFRVDLE 420 (1638)
T ss_pred HHHHHHHHcCC-----------------------CCEEEEecCCCCe----eEecCccCCccCEEEEeCCCCCCcchhhc
Confidence 89999999995 99999994 7 899999999 99999999999 88877
Q ss_pred HHhh
Q 028124 166 IRRM 169 (213)
Q Consensus 166 i~R~ 169 (213)
.|..
T Consensus 421 ~~~~ 424 (1638)
T PRK14701 421 DPTI 424 (1638)
T ss_pred ccch
Confidence 7765
No 81
>PRK01172 ski2-like helicase; Provisional
Probab=99.54 E-value=9.2e-14 Score=133.71 Aligned_cols=107 Identities=19% Similarity=0.186 Sum_probs=87.2
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhccC----C--------------------ceEEEecCCCCHHHHHHHHHHHhcccccc
Q 028124 52 PGLPMIVCCSSRDELDAVCSAVSNLA----D--------------------ISFSSLHSDLAETERTLILEEFRHTAMKW 107 (213)
Q Consensus 52 ~~~~~IIF~~~~~~~~~l~~~L~~~~----~--------------------~~~~~lhg~~~~~~R~~~l~~Fr~g~~~~ 107 (213)
.++++||||++++.++.++..|.... . ..+..+||+|++++|..+.+.|++|.
T Consensus 235 ~~~~vLVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~~hagl~~~eR~~ve~~f~~g~--- 311 (674)
T PRK01172 235 DGGQVLVFVSSRKNAEDYAEMLIQHFPEFNDFKVSSENNNVYDDSLNEMLPHGVAFHHAGLSNEQRRFIEEMFRNRY--- 311 (674)
T ss_pred CCCcEEEEeccHHHHHHHHHHHHHhhhhcccccccccccccccHHHHHHHhcCEEEecCCCCHHHHHHHHHHHHcCC---
Confidence 46899999999999999998886530 0 13678999999999999999999985
Q ss_pred cccccccCCCCCcCCCCCCceeEEEEeCCCCCcCcCCCCCCCCCEEEEecC---------CCChHHHHHhhccccCC---
Q 028124 108 NQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYEL---------PTKKETYIRRMTTCLAA--- 175 (213)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~rGld~~~v~~VI~yd~---------P~~~~~yi~R~GR~~~~--- 175 (213)
+++||||++ +++|+|+|+. .||++|. |-+..+|.||+||+|+.
T Consensus 312 --------------------i~VLvaT~~----la~Gvnipa~-~VII~~~~~~~~~~~~~~s~~~~~Qm~GRAGR~g~d 366 (674)
T PRK01172 312 --------------------IKVIVATPT----LAAGVNLPAR-LVIVRDITRYGNGGIRYLSNMEIKQMIGRAGRPGYD 366 (674)
T ss_pred --------------------CeEEEecch----hhccCCCcce-EEEEcCceEeCCCCceeCCHHHHHHHhhcCCCCCCC
Confidence 999999999 9999999986 4555554 44788999999998653
Q ss_pred -CCeEEEEEeCc
Q 028124 176 -DGSVINIVVGG 186 (213)
Q Consensus 176 -~g~~i~~~~~~ 186 (213)
.|.++.++...
T Consensus 367 ~~g~~~i~~~~~ 378 (674)
T PRK01172 367 QYGIGYIYAASP 378 (674)
T ss_pred CcceEEEEecCc
Confidence 47777776543
No 82
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=99.53 E-value=2.5e-14 Score=132.41 Aligned_cols=140 Identities=16% Similarity=0.157 Sum_probs=116.5
Q ss_pred CCCCceEEEEEecCcchHHHHHHHHHHHhhcC---CCCCCcEEEEeCchHHHHHHHHHHhccCCceEEEecCCCCHHHHH
Q 028124 18 HFSQPRHFYVAVDRLQFKMETLVELLHLVVAG---RRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERT 94 (213)
Q Consensus 18 ~~~~i~~~~~~~~~~~~K~~~L~~ll~~~~~~---~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~lhg~~~~~~R~ 94 (213)
.|-.+..+.+.+.++..|++.+..+.+.-... .--.+|+|||++++..|++|+..|..+| +++..+|++|+..+|.
T Consensus 402 RPVplErHlvf~~~e~eK~~ii~~L~k~E~~~~sskg~rGQtIVFT~SRrr~h~lA~~L~~kG-~~a~pYHaGL~y~eRk 480 (830)
T COG1202 402 RPVPLERHLVFARNESEKWDIIARLVKREFSTESSKGYRGQTIVFTYSRRRCHELADALTGKG-LKAAPYHAGLPYKERK 480 (830)
T ss_pred CCCChhHeeeeecCchHHHHHHHHHHHHHHhhhhccCcCCceEEEecchhhHHHHHHHhhcCC-cccccccCCCcHHHHH
Confidence 34457778889998888999999999752221 1123899999999999999999999998 9999999999999999
Q ss_pred HHHHHHhcccccccccccccCCCCCcCCCCCCceeEEEEeCCCCCcCcCCCCCCCCCEEEE----ecCCC-ChHHHHHhh
Q 028124 95 LILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLIN----YELPT-KKETYIRRM 169 (213)
Q Consensus 95 ~~l~~Fr~g~~~~~~~~~~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~rGld~~~v~~VI~----yd~P~-~~~~yi~R~ 169 (213)
.+-.+|.+++ +.++|+|.+ ++-|+|||.-. ||. ...-| ++..|.|+.
T Consensus 481 ~vE~~F~~q~-----------------------l~~VVTTAA----L~AGVDFPASQ-VIFEsLaMG~~WLs~~EF~QM~ 532 (830)
T COG1202 481 SVERAFAAQE-----------------------LAAVVTTAA----LAAGVDFPASQ-VIFESLAMGIEWLSVREFQQML 532 (830)
T ss_pred HHHHHHhcCC-----------------------cceEeehhh----hhcCCCCchHH-HHHHHHHcccccCCHHHHHHHh
Confidence 9999999986 999999999 99999999654 443 33445 789999999
Q ss_pred ccccCC----CCeEEEEEeCc
Q 028124 170 TTCLAA----DGSVINIVVGG 186 (213)
Q Consensus 170 GR~~~~----~g~~i~~~~~~ 186 (213)
||+|+. .|.++.++.++
T Consensus 533 GRAGRp~yHdrGkVyllvepg 553 (830)
T COG1202 533 GRAGRPDYHDRGKVYLLVEPG 553 (830)
T ss_pred cccCCCCcccCceEEEEecCC
Confidence 998654 39999999764
No 83
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=99.52 E-value=2.3e-13 Score=135.24 Aligned_cols=138 Identities=14% Similarity=0.153 Sum_probs=115.8
Q ss_pred hHHHHHHHHHHHhhcCCCCCCcEEEEeCchHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhcccccccccccc
Q 028124 34 FKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTE 113 (213)
Q Consensus 34 ~K~~~L~~ll~~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~~~~~~~~ 113 (213)
.|+.+|.++|..+. ..+.++|||+......+.|.+.|...+ +....+||+++..+|..++++|....
T Consensus 471 gKl~lLdkLL~~Lk---~~g~KVLIFSQft~~LdiLed~L~~~g-~~y~rIdGsts~~eRq~~Id~Fn~~~--------- 537 (1033)
T PLN03142 471 GKMVLLDKLLPKLK---ERDSRVLIFSQMTRLLDILEDYLMYRG-YQYCRIDGNTGGEDRDASIDAFNKPG--------- 537 (1033)
T ss_pred hHHHHHHHHHHHHH---hcCCeEEeehhHHHHHHHHHHHHHHcC-CcEEEECCCCCHHHHHHHHHHhcccc---------
Confidence 49999999998754 367899999999999999999999887 79999999999999999999997642
Q ss_pred cCCCCCcCCCCCCceeEEEEeCCCCCcCcCCCCCCCCCEEEEecCCCChHHHHHhhccc--cCCC--CeEEEEEeCc--h
Q 028124 114 QSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTC--LAAD--GSVINIVVGG--E 187 (213)
Q Consensus 114 ~~~~~~~~~~~~~~~~iLV~Td~~~~~~~rGld~~~v~~VI~yd~P~~~~~yi~R~GR~--~~~~--g~~i~~~~~~--e 187 (213)
+...-+|++|.+ .+.|+|++.+++||+||+||++..+.|++||+ -|+. -.++.|++.+ |
T Consensus 538 -----------s~~~VfLLSTrA----GGlGINLt~Ad~VIiyD~dWNP~~d~QAidRaHRIGQkk~V~VyRLIt~gTIE 602 (1033)
T PLN03142 538 -----------SEKFVFLLSTRA----GGLGINLATADIVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYTIE 602 (1033)
T ss_pred -----------CCceEEEEeccc----cccCCchhhCCEEEEeCCCCChHHHHHHHHHhhhcCCCceEEEEEEEeCCcHH
Confidence 113568999999 99999999999999999999999999999996 3444 4677888876 5
Q ss_pred hHHHHHHHHHhc
Q 028124 188 VVTLRSMEESLG 199 (213)
Q Consensus 188 ~~~~~~le~~l~ 199 (213)
...+....+.++
T Consensus 603 EkIlera~~Kl~ 614 (1033)
T PLN03142 603 EKVIERAYKKLA 614 (1033)
T ss_pred HHHHHHHHHHHH
Confidence 556655555553
No 84
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=99.48 E-value=3e-13 Score=136.60 Aligned_cols=103 Identities=17% Similarity=0.233 Sum_probs=87.5
Q ss_pred CCCCceEEEEEecCcchHHHHHHHHHHHhhcCCCCCCcEEEEeCch---HHHHHHHHHHhccCCceEEEecCCCCHHHHH
Q 028124 18 HFSQPRHFYVAVDRLQFKMETLVELLHLVVAGRRPGLPMIVCCSSR---DELDAVCSAVSNLADISFSSLHSDLAETERT 94 (213)
Q Consensus 18 ~~~~i~~~~~~~~~~~~K~~~L~~ll~~~~~~~~~~~~~IIF~~~~---~~~~~l~~~L~~~~~~~~~~lhg~~~~~~R~ 94 (213)
...+|.|.|+..+. +...|.++++.+ +.++||||+++ +.|++|++.|.+.| +.+..+||++++
T Consensus 300 ~~r~I~~~~~~~~~---~~~~L~~ll~~l------~~~~IVFv~t~~~~~~a~~l~~~L~~~g-~~a~~lhg~~~~---- 365 (1171)
T TIGR01054 300 TLRNVVDVYVEDED---LKETLLEIVKKL------GTGGIVYVSIDYGKEKAEEIAEFLENHG-VKAVAYHATKPK---- 365 (1171)
T ss_pred cccceEEEEEeccc---HHHHHHHHHHHc------CCCEEEEEeccccHHHHHHHHHHHHhCC-ceEEEEeCCCCH----
Confidence 35678898876543 345677777762 36899999999 99999999999987 899999999973
Q ss_pred HHHHHHhcccccccccccccCCCCCcCCCCCCceeEEEEe----CCCCCcCcCCCCCCC-CCEEEEecCCCC
Q 028124 95 LILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVT----DACLPLLSSGESAIS-ARVLINYELPTK 161 (213)
Q Consensus 95 ~~l~~Fr~g~~~~~~~~~~~~~~~~~~~~~~~~~~iLV~T----d~~~~~~~rGld~~~-v~~VI~yd~P~~ 161 (213)
+++++|++|+ +++||+| |+ ++||+|+|+ +++|||||+|..
T Consensus 366 ~~l~~Fr~G~-----------------------~~vLVata~~tdv----~aRGIDip~~V~~vI~~~~P~~ 410 (1171)
T TIGR01054 366 EDYEKFAEGE-----------------------IDVLIGVASYYGT----LVRGLDLPERVRYAVFLGVPKF 410 (1171)
T ss_pred HHHHHHHcCC-----------------------CCEEEEeccccCc----ccccCCCCccccEEEEECCCCE
Confidence 6899999995 9999994 89 999999999 899999999974
No 85
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.48 E-value=9.5e-14 Score=124.99 Aligned_cols=161 Identities=14% Similarity=0.130 Sum_probs=123.8
Q ss_pred CCCCCCCCCCCCCCCCceEEEEEecCcchHHHHHHHHHHHhhcC--------CCCCCcEEEEeCchHHHHHHHHHHhccC
Q 028124 6 VESPCPPCQSPSHFSQPRHFYVAVDRLQFKMETLVELLHLVVAG--------RRPGLPMIVCCSSRDELDAVCSAVSNLA 77 (213)
Q Consensus 6 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~K~~~L~~ll~~~~~~--------~~~~~~~IIF~~~~~~~~~l~~~L~~~~ 77 (213)
+..|..+...|.-+.++=.-..+-..-++-+..|.++-..-.+. +...+-.||||.|+..|+.++-.|...|
T Consensus 200 L~~PVAiFkTP~FR~NLFYD~~~K~~I~D~~~~LaDF~~~~LG~~~~~~~~~K~~~GCGIVYCRTR~~cEq~AI~l~~~G 279 (641)
T KOG0352|consen 200 LRNPVAIFKTPTFRDNLFYDNHMKSFITDCLTVLADFSSSNLGKHEKASQNKKTFTGCGIVYCRTRNECEQVAIMLEIAG 279 (641)
T ss_pred hcCcHHhccCcchhhhhhHHHHHHHHhhhHhHhHHHHHHHhcCChhhhhcCCCCcCcceEEEeccHHHHHHHHHHhhhcC
Confidence 34556666666666554211111111223556666655432220 1123678999999999999999999998
Q ss_pred CceEEEecCCCCHHHHHHHHHHHhcccccccccccccCCCCCcCCCCCCceeEEEEeCCCCCcCcCCCCCCCCCEEEEec
Q 028124 78 DISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYE 157 (213)
Q Consensus 78 ~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~~~~~~~~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~rGld~~~v~~VI~yd 157 (213)
+.+..+|.++...||.++-++|.+++ +.|+++|.. +++|+|-|+|+.|||+|
T Consensus 280 -i~A~AYHAGLK~~ERTeVQe~WM~~~-----------------------~PvI~AT~S----FGMGVDKp~VRFViHW~ 331 (641)
T KOG0352|consen 280 -IPAMAYHAGLKKKERTEVQEKWMNNE-----------------------IPVIAATVS----FGMGVDKPDVRFVIHWS 331 (641)
T ss_pred -cchHHHhcccccchhHHHHHHHhcCC-----------------------CCEEEEEec----cccccCCcceeEEEecC
Confidence 99999999999999999999999985 999999999 99999999999999999
Q ss_pred CCCChHHHHHhhccc--cCCCCeEEEEEeCchhHHHHHH
Q 028124 158 LPTKKETYIRRMTTC--LAADGSVINIVVGGEVVTLRSM 194 (213)
Q Consensus 158 ~P~~~~~yi~R~GR~--~~~~g~~i~~~~~~e~~~~~~l 194 (213)
+|.+.+.|.|..||+ .|.++.|-.++..+|...+..|
T Consensus 332 ~~qn~AgYYQESGRAGRDGk~SyCRLYYsR~D~~~i~FL 370 (641)
T KOG0352|consen 332 PSQNLAGYYQESGRAGRDGKRSYCRLYYSRQDKNALNFL 370 (641)
T ss_pred chhhhHHHHHhccccccCCCccceeeeecccchHHHHHH
Confidence 999999999999997 4677889888888776655444
No 86
>PRK09694 helicase Cas3; Provisional
Probab=99.43 E-value=1.7e-12 Score=127.55 Aligned_cols=107 Identities=14% Similarity=0.317 Sum_probs=85.4
Q ss_pred HHHHHHHHHHhhcCCCCCCcEEEEeCchHHHHHHHHHHhccC--CceEEEecCCCCHHHH----HHHHHHH-hccccccc
Q 028124 36 METLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLA--DISFSSLHSDLAETER----TLILEEF-RHTAMKWN 108 (213)
Q Consensus 36 ~~~L~~ll~~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~--~~~~~~lhg~~~~~~R----~~~l~~F-r~g~~~~~ 108 (213)
...+..+++.+ ..+++++|||||++.|+.+++.|++.. +..+..+||.++..+| .++++.| +++.
T Consensus 547 ~~~l~~i~~~~----~~g~~vLVf~NTV~~Aq~ly~~L~~~~~~~~~v~llHsrf~~~dR~~~E~~vl~~fgk~g~---- 618 (878)
T PRK09694 547 LTLLQRMIAAA----NAGAQVCLICNLVDDAQKLYQRLKELNNTQVDIDLFHARFTLNDRREKEQRVIENFGKNGK---- 618 (878)
T ss_pred HHHHHHHHHHH----hcCCEEEEEECCHHHHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHHHHHHhcCC----
Confidence 34444455442 357899999999999999999998753 2579999999999999 4577888 4442
Q ss_pred ccccccCCCCCcCCCCCCceeEEEEeCCCCCcCcCCCCCCCCCEEEEecCCCChHHHHHhhcccc
Q 028124 109 QKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCL 173 (213)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~rGld~~~v~~VI~yd~P~~~~~yi~R~GR~~ 173 (213)
..+..|||+|++ +++|+|+ +++++|....| .+.|+||+||++
T Consensus 619 ----------------r~~~~ILVaTQV----iE~GLDI-d~DvlItdlaP--idsLiQRaGR~~ 660 (878)
T PRK09694 619 ----------------RNQGRILVATQV----VEQSLDL-DFDWLITQLCP--VDLLFQRLGRLH 660 (878)
T ss_pred ----------------cCCCeEEEECcc----hhheeec-CCCeEEECCCC--HHHHHHHHhccC
Confidence 012579999999 9999999 68999999988 789999999974
No 87
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.39 E-value=8.2e-12 Score=118.01 Aligned_cols=165 Identities=13% Similarity=0.214 Sum_probs=121.2
Q ss_pred CCCCCCCCCCCceEEEEEecCcchHHHHHHHHHHHhhcCCCCCCcEEEEeCchH--------HHHHHHHHHhcc-CCceE
Q 028124 11 PPCQSPSHFSQPRHFYVAVDRLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRD--------ELDAVCSAVSNL-ADISF 81 (213)
Q Consensus 11 ~~~~~~~~~~~i~~~~~~~~~~~~K~~~L~~ll~~~~~~~~~~~~~IIF~~~~~--------~~~~l~~~L~~~-~~~~~ 81 (213)
.+..-|+.+..|..+.+.... +-+++..+-+++ ..+.|+.|.|+-.+ .|+.+++.|++. ++.++
T Consensus 438 ~IdElP~GRkpI~T~~i~~~~---~~~v~e~i~~ei----~~GrQaY~VcPLIeESE~l~l~~a~~~~~~L~~~~~~~~v 510 (677)
T COG1200 438 IIDELPPGRKPITTVVIPHER---RPEVYERIREEI----AKGRQAYVVCPLIEESEKLELQAAEELYEELKSFLPELKV 510 (677)
T ss_pred hhccCCCCCCceEEEEecccc---HHHHHHHHHHHH----HcCCEEEEEeccccccccchhhhHHHHHHHHHHHccccee
Confidence 344456666778877765433 444444444443 35889999999443 566778888743 55789
Q ss_pred EEecCCCCHHHHHHHHHHHhcccccccccccccCCCCCcCCCCCCceeEEEEeCCCCCcCcCCCCCCCCCEEEEecCCCC
Q 028124 82 SSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTK 161 (213)
Q Consensus 82 ~~lhg~~~~~~R~~~l~~Fr~g~~~~~~~~~~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~rGld~~~v~~VI~yd~P~~ 161 (213)
..+||.|+..++.+++++|++|+ .+|||||.+ .+-|+|+|+++++|.+|.-+-
T Consensus 511 gL~HGrm~~~eKd~vM~~Fk~~e-----------------------~~ILVaTTV----IEVGVdVPnATvMVIe~AERF 563 (677)
T COG1200 511 GLVHGRMKPAEKDAVMEAFKEGE-----------------------IDILVATTV----IEVGVDVPNATVMVIENAERF 563 (677)
T ss_pred EEEecCCChHHHHHHHHHHHcCC-----------------------CcEEEEeeE----EEecccCCCCeEEEEechhhh
Confidence 99999999999999999999986 999999999 999999999999999997775
Q ss_pred hHHHHHhh-ccc--cCCCCeEEEEEeCch----hHHHHHHHHHh-cccccccCccc
Q 028124 162 KETYIRRM-TTC--LAADGSVINIVVGGE----VVTLRSMEESL-GLIVAEVPINI 209 (213)
Q Consensus 162 ~~~yi~R~-GR~--~~~~g~~i~~~~~~e----~~~~~~le~~l-~~~~~~~~~~~ 209 (213)
-=+-+|+. ||. |+..+.|+.+..+.. ...++-+.+.. |+.++|..+.+
T Consensus 564 GLaQLHQLRGRVGRG~~qSyC~Ll~~~~~~~~a~~RL~im~~t~DGF~IAE~DLkl 619 (677)
T COG1200 564 GLAQLHQLRGRVGRGDLQSYCVLLYKPPLSEVAKQRLKIMRETTDGFVIAEEDLKL 619 (677)
T ss_pred hHHHHHHhccccCCCCcceEEEEEeCCCCChhHHHHHHHHHhcCCcceehhhhHhc
Confidence 44445544 884 667799999997654 34455554443 67777765544
No 88
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.35 E-value=1.2e-11 Score=122.34 Aligned_cols=150 Identities=14% Similarity=0.178 Sum_probs=125.2
Q ss_pred CCCCCCCCCCCCCCCCCCCCCceEEEEEecCcchHHHHHHHHHHHhhcCCCCCCcEEEEeCchHHHHHHHHHHhcc-CCc
Q 028124 1 MAIDGVESPCPPCQSPSHFSQPRHFYVAVDRLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNL-ADI 79 (213)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~K~~~L~~ll~~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~-~~~ 79 (213)
||+-|++..+.+..+|..+-.|+.++...+..--|-.+++++. .++|+..-+|..++.+.++..|+.. ++.
T Consensus 759 Msm~GiRdlSvI~TPP~~R~pV~T~V~~~d~~~ireAI~REl~--------RgGQvfYv~NrV~~Ie~~~~~L~~LVPEa 830 (1139)
T COG1197 759 MSLSGIRDLSVIATPPEDRLPVKTFVSEYDDLLIREAILRELL--------RGGQVFYVHNRVESIEKKAERLRELVPEA 830 (1139)
T ss_pred HHHhcchhhhhccCCCCCCcceEEEEecCChHHHHHHHHHHHh--------cCCEEEEEecchhhHHHHHHHHHHhCCce
Confidence 8899999999999999999999988876665543333333333 3589999999999999999999876 778
Q ss_pred eEEEecCCCCHHHHHHHHHHHhcccccccccccccCCCCCcCCCCCCceeEEEEeCCCCCcCcCCCCCCCCCEEEEecCC
Q 028124 80 SFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELP 159 (213)
Q Consensus 80 ~~~~lhg~~~~~~R~~~l~~Fr~g~~~~~~~~~~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~rGld~~~v~~VI~yd~P 159 (213)
++...||.|+..+-.+++.+|-+|+ .+|||||.+ .+-|+|+|+++++|..+.-
T Consensus 831 rI~vaHGQM~e~eLE~vM~~F~~g~-----------------------~dVLv~TTI----IEtGIDIPnANTiIIe~AD 883 (1139)
T COG1197 831 RIAVAHGQMRERELEEVMLDFYNGE-----------------------YDVLVCTTI----IETGIDIPNANTIIIERAD 883 (1139)
T ss_pred EEEEeecCCCHHHHHHHHHHHHcCC-----------------------CCEEEEeee----eecCcCCCCCceEEEeccc
Confidence 9999999999999999999999995 999999999 9999999999999987655
Q ss_pred C-ChHHHHHhhccccCC--CCeEEEEEeC
Q 028124 160 T-KKETYIRRMTTCLAA--DGSVINIVVG 185 (213)
Q Consensus 160 ~-~~~~yi~R~GR~~~~--~g~~i~~~~~ 185 (213)
. -.+...|--||.|++ .+.|+.++.+
T Consensus 884 ~fGLsQLyQLRGRVGRS~~~AYAYfl~p~ 912 (1139)
T COG1197 884 KFGLAQLYQLRGRVGRSNKQAYAYFLYPP 912 (1139)
T ss_pred cccHHHHHHhccccCCccceEEEEEeecC
Confidence 4 466777766886544 5888888864
No 89
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.32 E-value=3.5e-11 Score=110.82 Aligned_cols=106 Identities=21% Similarity=0.276 Sum_probs=95.5
Q ss_pred hHHHHHHHHHHHhhcCCCCCCcEEEEeCchHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhcccccccccccc
Q 028124 34 FKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTE 113 (213)
Q Consensus 34 ~K~~~L~~ll~~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~~~~~~~~ 113 (213)
.|+..+..++... ..+.+++|||.+..+++.++..+...+ + +..++|+.+..+|.+++++|+.|.
T Consensus 268 ~~~~~~~~~~~~~----~~~~~~lif~~~~~~a~~i~~~~~~~~-~-~~~it~~t~~~eR~~il~~fr~g~--------- 332 (442)
T COG1061 268 RKIAAVRGLLLKH----ARGDKTLIFASDVEHAYEIAKLFLAPG-I-VEAITGETPKEEREAILERFRTGG--------- 332 (442)
T ss_pred HHHHHHHHHHHHh----cCCCcEEEEeccHHHHHHHHHHhcCCC-c-eEEEECCCCHHHHHHHHHHHHcCC---------
Confidence 3666777777651 146799999999999999999998876 5 889999999999999999999984
Q ss_pred cCCCCCcCCCCCCceeEEEEeCCCCCcCcCCCCCCCCCEEEEecCCCChHHHHHhhccc
Q 028124 114 QSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTC 172 (213)
Q Consensus 114 ~~~~~~~~~~~~~~~~iLV~Td~~~~~~~rGld~~~v~~VI~yd~P~~~~~yi~R~GR~ 172 (213)
+++||++.+ +.+|+|+|+++++|....+.|...|+||+||.
T Consensus 333 --------------~~~lv~~~v----l~EGvDiP~~~~~i~~~~t~S~~~~~Q~lGR~ 373 (442)
T COG1061 333 --------------IKVLVTVKV----LDEGVDIPDADVLIILRPTGSRRLFIQRLGRG 373 (442)
T ss_pred --------------CCEEEEeee----ccceecCCCCcEEEEeCCCCcHHHHHHHhhhh
Confidence 999999999 99999999999999999999999999999995
No 90
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=99.30 E-value=1.2e-11 Score=110.27 Aligned_cols=120 Identities=19% Similarity=0.224 Sum_probs=101.1
Q ss_pred CCCCCCceEEEEEecC-cchHHHHHHHHHHHhhcCCCCCCcEEEEeCchHHHHHHHHHHhccCCceEEEecCCCCHHHHH
Q 028124 16 PSHFSQPRHFYVAVDR-LQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERT 94 (213)
Q Consensus 16 ~~~~~~i~~~~~~~~~-~~~K~~~L~~ll~~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~lhg~~~~~~R~ 94 (213)
..++++++..+..-+. .++-.+-+.++++. ...++..||||=+++.|+.++..|++.| +.+..+|..|.+++|.
T Consensus 283 ~fnr~nl~yev~qkp~n~dd~~edi~k~i~~----~f~gqsgiiyc~sq~d~ekva~alkn~g-i~a~~yha~lep~dks 357 (695)
T KOG0353|consen 283 GFNRPNLKYEVRQKPGNEDDCIEDIAKLIKG----DFAGQSGIIYCFSQKDCEKVAKALKNHG-IHAGAYHANLEPEDKS 357 (695)
T ss_pred ccCCCCceeEeeeCCCChHHHHHHHHHHhcc----ccCCCcceEEEeccccHHHHHHHHHhcC-ccccccccccCccccc
Confidence 3456666655544433 33344445555543 5678999999999999999999999998 9999999999999999
Q ss_pred HHHHHHhcccccccccccccCCCCCcCCCCCCceeEEEEeCCCCCcCcCCCCCCCCCEEEEecCCCChHHHHH
Q 028124 95 LILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIR 167 (213)
Q Consensus 95 ~~l~~Fr~g~~~~~~~~~~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~rGld~~~v~~VI~yd~P~~~~~yi~ 167 (213)
.+-+.|-.|+ ++++|+|-+ ++.|+|-|+|+.|||-.+|.+.+.|.|
T Consensus 358 ~~hq~w~a~e-----------------------iqvivatva----fgmgidkpdvrfvihhsl~ksienyyq 403 (695)
T KOG0353|consen 358 GAHQGWIAGE-----------------------IQVIVATVA----FGMGIDKPDVRFVIHHSLPKSIENYYQ 403 (695)
T ss_pred cccccccccc-----------------------eEEEEEEee----ecccCCCCCeeEEEecccchhHHHHHH
Confidence 9999999985 999999999 999999999999999999999999999
No 91
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=99.29 E-value=6e-11 Score=109.48 Aligned_cols=106 Identities=17% Similarity=0.243 Sum_probs=98.9
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhcccccccccccccCCCCCcCCCCCCceeEE
Q 028124 52 PGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMI 131 (213)
Q Consensus 52 ~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~~~~~~~~~~~~~~~~~~~~~~~~iL 131 (213)
.+.+++|-+=|++.|+.|.++|...| +++..+|+++..-+|.+++++.|.|+ .++|
T Consensus 445 ~~eRvLVTtLTKkmAEdLT~Yl~e~g-ikv~YlHSdidTlER~eIirdLR~G~-----------------------~DvL 500 (663)
T COG0556 445 KNERVLVTTLTKKMAEDLTEYLKELG-IKVRYLHSDIDTLERVEIIRDLRLGE-----------------------FDVL 500 (663)
T ss_pred cCCeEEEEeehHHHHHHHHHHHHhcC-ceEEeeeccchHHHHHHHHHHHhcCC-----------------------ccEE
Confidence 56899999999999999999999998 99999999999999999999999996 9999
Q ss_pred EEeCCCCCcCcCCCCCCCCCEEEEec-----CCCChHHHHHhhccccCC-CCeEEEEEeC
Q 028124 132 VVTDACLPLLSSGESAISARVLINYE-----LPTKKETYIRRMTTCLAA-DGSVINIVVG 185 (213)
Q Consensus 132 V~Td~~~~~~~rGld~~~v~~VI~yd-----~P~~~~~yi~R~GR~~~~-~g~~i~~~~~ 185 (213)
|.-++ +.+|+|+|+|+.|..+| |.+|-.+.||-+||++++ .|.||.+...
T Consensus 501 VGINL----LREGLDiPEVsLVAIlDADKeGFLRse~SLIQtIGRAARN~~GkvIlYAD~ 556 (663)
T COG0556 501 VGINL----LREGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKVILYADK 556 (663)
T ss_pred Eeehh----hhccCCCcceeEEEEeecCccccccccchHHHHHHHHhhccCCeEEEEchh
Confidence 99999 99999999999999987 677899999999998766 5999988865
No 92
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.18 E-value=8.5e-10 Score=97.44 Aligned_cols=114 Identities=18% Similarity=0.295 Sum_probs=92.3
Q ss_pred CCCCCcEEEEeCchHHHHHHHHHHh-ccCCceEEEecCCCCHHHHHHHHHHHhcccccccccccccCCCCCcCCCCCCce
Q 028124 50 RRPGLPMIVCCSSRDELDAVCSAVS-NLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKS 128 (213)
Q Consensus 50 ~~~~~~~IIF~~~~~~~~~l~~~L~-~~~~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (213)
...+.+++||+++....+.++..|+ ..+......+|+. ...|.+.+++||+|. +
T Consensus 302 ~~~~~P~liF~p~I~~~eq~a~~lk~~~~~~~i~~Vhs~--d~~R~EkV~~fR~G~-----------------------~ 356 (441)
T COG4098 302 RKTGRPVLIFFPEIETMEQVAAALKKKLPKETIASVHSE--DQHRKEKVEAFRDGK-----------------------I 356 (441)
T ss_pred HhcCCcEEEEecchHHHHHHHHHHHhhCCccceeeeecc--CccHHHHHHHHHcCc-----------------------e
Confidence 4578999999999999999999994 5566677899986 368899999999995 9
Q ss_pred eEEEEeCCCCCcCcCCCCCCCCCEEEEecCC--CChHHHHHhhccccCC----CCeEEEEEeCchhHHHH
Q 028124 129 HMIVVTDACLPLLSSGESAISARVLINYELP--TKKETYIRRMTTCLAA----DGSVINIVVGGEVVTLR 192 (213)
Q Consensus 129 ~iLV~Td~~~~~~~rGld~~~v~~VI~yd~P--~~~~~yi~R~GR~~~~----~g~~i~~~~~~e~~~~~ 192 (213)
++||+|.+ ++||+.+|+|++.|.=.-. .+-+..+|-+||.|++ .|.++.|-......+.+
T Consensus 357 ~lLiTTTI----LERGVTfp~vdV~Vlgaeh~vfTesaLVQIaGRvGRs~~~PtGdv~FFH~G~skaM~~ 422 (441)
T COG4098 357 TLLITTTI----LERGVTFPNVDVFVLGAEHRVFTESALVQIAGRVGRSLERPTGDVLFFHYGKSKAMKQ 422 (441)
T ss_pred EEEEEeeh----hhcccccccceEEEecCCcccccHHHHHHHhhhccCCCcCCCCcEEEEeccchHHHHH
Confidence 99999999 9999999999986653323 3678999988987655 38888777655544443
No 93
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.15 E-value=2.8e-10 Score=114.74 Aligned_cols=92 Identities=11% Similarity=0.183 Sum_probs=79.1
Q ss_pred CCcEEEEeCchHHHHHHHHHHhcc-----CC---ceEEEecCCCCHHHHHHHHHHHhcccccccccccccCCCCCcCCCC
Q 028124 53 GLPMIVCCSSRDELDAVCSAVSNL-----AD---ISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKD 124 (213)
Q Consensus 53 ~~~~IIF~~~~~~~~~l~~~L~~~-----~~---~~~~~lhg~~~~~~R~~~l~~Fr~g~~~~~~~~~~~~~~~~~~~~~ 124 (213)
..++||||.++.+|+.+++.|... ++ ..+..+||+++ ++.+++++|+++.
T Consensus 698 ~~KtiIF~~s~~HA~~i~~~L~~~f~~~~~~~~~~~v~~itg~~~--~~~~li~~Fk~~~-------------------- 755 (1123)
T PRK11448 698 EGKTLIFAATDAHADMVVRLLKEAFKKKYGQVEDDAVIKITGSID--KPDQLIRRFKNER-------------------- 755 (1123)
T ss_pred CCcEEEEEcCHHHHHHHHHHHHHHHHhhcCCcCccceEEEeCCcc--chHHHHHHHhCCC--------------------
Confidence 479999999999999999887652 11 24567999875 5678999999974
Q ss_pred CCceeEEEEeCCCCCcCcCCCCCCCCCEEEEecCCCChHHHHHhhccc
Q 028124 125 EHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTC 172 (213)
Q Consensus 125 ~~~~~iLV~Td~~~~~~~rGld~~~v~~VI~yd~P~~~~~yi~R~GR~ 172 (213)
..+|+|++|+ +++|+|+|.+.+||+++++.|...|+|++||+
T Consensus 756 --~p~IlVsvdm----L~TG~DvP~v~~vVf~rpvkS~~lf~QmIGRg 797 (1123)
T PRK11448 756 --LPNIVVTVDL----LTTGIDVPSICNLVFLRRVRSRILYEQMLGRA 797 (1123)
T ss_pred --CCeEEEEecc----cccCCCcccccEEEEecCCCCHHHHHHHHhhh
Confidence 2379999999 99999999999999999999999999999995
No 94
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.13 E-value=5.4e-10 Score=104.62 Aligned_cols=90 Identities=13% Similarity=0.207 Sum_probs=73.1
Q ss_pred HHHHHHHHhcc-CCceEEEecCCCCHHHH--HHHHHHHhcccccccccccccCCCCCcCCCCCCceeEEEEeCCCCCcCc
Q 028124 66 LDAVCSAVSNL-ADISFSSLHSDLAETER--TLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLS 142 (213)
Q Consensus 66 ~~~l~~~L~~~-~~~~~~~lhg~~~~~~R--~~~l~~Fr~g~~~~~~~~~~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~ 142 (213)
++++.+.|.+. ++..+..+|++++..++ .+++++|++|+ .+|||+|++ ++
T Consensus 271 te~~~e~l~~~fp~~~v~~~d~d~~~~~~~~~~~l~~f~~g~-----------------------~~ILVgT~~----i~ 323 (505)
T TIGR00595 271 TEQVEEELAKLFPGARIARIDSDTTSRKGAHEALLNQFANGK-----------------------ADILIGTQM----IA 323 (505)
T ss_pred HHHHHHHHHhhCCCCcEEEEecccccCccHHHHHHHHHhcCC-----------------------CCEEEeCcc----cc
Confidence 57888888765 45789999999987766 88999999985 999999999 99
Q ss_pred CCCCCCCCCEEE--EecC----CC------ChHHHHHhhcccc--CCCCeEEEE
Q 028124 143 SGESAISARVLI--NYEL----PT------KKETYIRRMTTCL--AADGSVINI 182 (213)
Q Consensus 143 rGld~~~v~~VI--~yd~----P~------~~~~yi~R~GR~~--~~~g~~i~~ 182 (213)
+|+|+|++++|+ |+|. |. ....|+|++||+| +..|.++..
T Consensus 324 kG~d~~~v~lV~vl~aD~~l~~pd~ra~E~~~~ll~q~~GRagR~~~~g~viiq 377 (505)
T TIGR00595 324 KGHHFPNVTLVGVLDADSGLHSPDFRAAERGFQLLTQVAGRAGRAEDPGQVIIQ 377 (505)
T ss_pred cCCCCCcccEEEEEcCcccccCcccchHHHHHHHHHHHHhccCCCCCCCEEEEE
Confidence 999999999874 6664 42 2467899999974 456877743
No 95
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.12 E-value=1.8e-09 Score=105.40 Aligned_cols=125 Identities=14% Similarity=0.095 Sum_probs=104.5
Q ss_pred CcchHHHHHHHHHHHhhcCCCCCCcEEEEeCchHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhccccccccc
Q 028124 31 RLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQK 110 (213)
Q Consensus 31 ~~~~K~~~L~~ll~~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~~~~~ 110 (213)
....|+..+.+.+.... ..+.|+||||+|+..++.|+..|...+ +.+..+|+. +.+|...+..|+.+
T Consensus 411 t~~~K~~aI~~~I~~~~---~~grpVLIft~Si~~se~Ls~~L~~~g-i~~~vLnak--q~eREa~Iia~Ag~------- 477 (830)
T PRK12904 411 TEKEKFDAVVEDIKERH---KKGQPVLVGTVSIEKSELLSKLLKKAG-IPHNVLNAK--NHEREAEIIAQAGR------- 477 (830)
T ss_pred CHHHHHHHHHHHHHHHH---hcCCCEEEEeCcHHHHHHHHHHHHHCC-CceEeccCc--hHHHHHHHHHhcCC-------
Confidence 33459999999886532 357899999999999999999999987 899999996 78999999999998
Q ss_pred ccccCCCCCcCCCCCCceeEEEEeCCCCCcCcCCCCCCCC--------------------------------------CE
Q 028124 111 VTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISA--------------------------------------RV 152 (213)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~rGld~~~v--------------------------------------~~ 152 (213)
+..|+|||++ ++||+|++-- =+
T Consensus 478 ----------------~g~VtIATNm----AGRGtDI~LgGn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~GGLh 537 (830)
T PRK12904 478 ----------------PGAVTIATNM----AGRGTDIKLGGNPEMLAAALLEEETEEQIAKIKAEWQEEHEEVLEAGGLH 537 (830)
T ss_pred ----------------CceEEEeccc----ccCCcCccCCCchhhhhhhhhhhhhhHHHHHHHHHHhhhhhhHHHcCCCE
Confidence 4999999999 9999999753 16
Q ss_pred EEEecCCCChHHHHHhhcccc--CCCCeEEEEEeCchh
Q 028124 153 LINYELPTKKETYIRRMTTCL--AADGSVINIVVGGEV 188 (213)
Q Consensus 153 VI~yd~P~~~~~yi~R~GR~~--~~~g~~i~~~~~~e~ 188 (213)
||--..|.|..-=-|-.||+| |.+|.+-.|++-+|.
T Consensus 538 VigTerhesrRid~QlrGRagRQGdpGss~f~lSleD~ 575 (830)
T PRK12904 538 VIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLEDD 575 (830)
T ss_pred EEecccCchHHHHHHhhcccccCCCCCceeEEEEcCcH
Confidence 888888888777778779975 667998888876543
No 96
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=99.09 E-value=7.7e-10 Score=109.03 Aligned_cols=160 Identities=23% Similarity=0.224 Sum_probs=120.2
Q ss_pred CCCCceEEEEEec---------CcchHHHHHHHHHHHhhcCCCCCCcEEEEeCchHHHHHHH----HHHhccC---CceE
Q 028124 18 HFSQPRHFYVAVD---------RLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVC----SAVSNLA---DISF 81 (213)
Q Consensus 18 ~~~~i~~~~~~~~---------~~~~K~~~L~~ll~~~~~~~~~~~~~IIF~~~~~~~~~l~----~~L~~~~---~~~~ 81 (213)
.+...++++..-+ ..+ +...+..++..+. ..+.++|+|+.+++.++.+. +.+...+ ...+
T Consensus 266 ~~~~~~~~~~~~p~~~~~~~~~r~s-~~~~~~~~~~~~~---~~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~~~l~~~v 341 (851)
T COG1205 266 SPRGLRYFVRREPPIRELAESIRRS-ALAELATLAALLV---RNGIQTLVFFRSRKQVELLYLSPRRRLVREGGKLLDAV 341 (851)
T ss_pred CCCCceEEEEeCCcchhhhhhcccc-hHHHHHHHHHHHH---HcCceEEEEEehhhhhhhhhhchhHHHhhcchhhhhhe
Confidence 3444566665555 223 6777777766543 36889999999999999996 3333322 1357
Q ss_pred EEecCCCCHHHHHHHHHHHhcccccccccccccCCCCCcCCCCCCceeEEEEeCCCCCcCcCCCCCCCCCEEEEecCCC-
Q 028124 82 SSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPT- 160 (213)
Q Consensus 82 ~~lhg~~~~~~R~~~l~~Fr~g~~~~~~~~~~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~rGld~~~v~~VI~yd~P~- 160 (213)
..+++++..++|.++.+.|++|+ ..++++|.+ +.-|+|+.+++.||++..|.
T Consensus 342 ~~~~~~~~~~er~~ie~~~~~g~-----------------------~~~~~st~A----lelgidiG~ldavi~~g~P~~ 394 (851)
T COG1205 342 STYRAGLHREERRRIEAEFKEGE-----------------------LLGVIATNA----LELGIDIGSLDAVIAYGYPGV 394 (851)
T ss_pred eeccccCCHHHHHHHHHHHhcCC-----------------------ccEEecchh----hhhceeehhhhhHhhcCCCCc
Confidence 88899999999999999999995 999999999 99999999999999999999
Q ss_pred ChHHHHHhhccccCCCCeEEEEE--e--CchhHHHHHHHHHhc---ccccccCcc
Q 028124 161 KKETYIRRMTTCLAADGSVINIV--V--GGEVVTLRSMEESLG---LIVAEVPIN 208 (213)
Q Consensus 161 ~~~~yi~R~GR~~~~~g~~i~~~--~--~~e~~~~~~le~~l~---~~~~~~~~~ 208 (213)
+..++.||.||+|++...++.++ . +-+..+...-+..++ ...+.+.++
T Consensus 395 s~~~~~Q~~GRaGR~~~~~l~~~v~~~~~~d~yy~~~p~~~~~~~~~~~e~~~~~ 449 (851)
T COG1205 395 SVLSFRQRAGRAGRRGQESLVLVVLRSDPLDSYYLRHPEELLETGFGPVESVRVD 449 (851)
T ss_pred hHHHHHHhhhhccCCCCCceEEEEeCCCccchhhhhCcHhhhhcccCcccccccC
Confidence 89999999999877764444444 2 236666666677666 444444443
No 97
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.09 E-value=1.2e-09 Score=105.62 Aligned_cols=93 Identities=11% Similarity=0.141 Sum_probs=74.9
Q ss_pred HHHHHHHHHhcc-CCceEEEecCCCC--HHHHHHHHHHHhcccccccccccccCCCCCcCCCCCCceeEEEEeCCCCCcC
Q 028124 65 ELDAVCSAVSNL-ADISFSSLHSDLA--ETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLL 141 (213)
Q Consensus 65 ~~~~l~~~L~~~-~~~~~~~lhg~~~--~~~R~~~l~~Fr~g~~~~~~~~~~~~~~~~~~~~~~~~~~iLV~Td~~~~~~ 141 (213)
.++++++.|.+. ++..+..+|+++. ++++.+++++|++|+ .+|||+|++ +
T Consensus 438 G~e~~~e~l~~~fp~~~v~~~~~d~~~~~~~~~~~l~~f~~g~-----------------------~~ILVgT~~----i 490 (679)
T PRK05580 438 GTERLEEELAELFPEARILRIDRDTTRRKGALEQLLAQFARGE-----------------------ADILIGTQM----L 490 (679)
T ss_pred cHHHHHHHHHHhCCCCcEEEEeccccccchhHHHHHHHHhcCC-----------------------CCEEEEChh----h
Confidence 566888888765 4578999999986 467899999999985 999999999 9
Q ss_pred cCCCCCCCCCEEE--EecCCCC----------hHHHHHhhcccc--CCCCeEEEEEe
Q 028124 142 SSGESAISARVLI--NYELPTK----------KETYIRRMTTCL--AADGSVINIVV 184 (213)
Q Consensus 142 ~rGld~~~v~~VI--~yd~P~~----------~~~yi~R~GR~~--~~~g~~i~~~~ 184 (213)
++|+|+|++++|+ ++|.+-+ ...|+|++||+| +..|.++....
T Consensus 491 akG~d~p~v~lV~il~aD~~l~~pdfra~Er~~~~l~q~~GRagR~~~~g~viiqT~ 547 (679)
T PRK05580 491 AKGHDFPNVTLVGVLDADLGLFSPDFRASERTFQLLTQVAGRAGRAEKPGEVLIQTY 547 (679)
T ss_pred ccCCCCCCcCEEEEEcCchhccCCccchHHHHHHHHHHHHhhccCCCCCCEEEEEeC
Confidence 9999999999985 4554433 367899999974 56688886554
No 98
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.08 E-value=2.4e-09 Score=104.91 Aligned_cols=124 Identities=15% Similarity=0.109 Sum_probs=101.1
Q ss_pred cchHHHHHHHHHHHhhcCCCCCCcEEEEeCchHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhcccccccccc
Q 028124 32 LQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKV 111 (213)
Q Consensus 32 ~~~K~~~L~~ll~~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~~~~~~ 111 (213)
...|+.++.+.+...- ..++|+||||+|+..++.|+..|.+.| +....||+.+.+.+|..+.+.|+.|.
T Consensus 426 ~~~k~~av~~~i~~~~---~~g~PVLVgt~Sie~sE~ls~~L~~~g-i~h~vLnak~~q~Ea~iia~Ag~~G~------- 494 (896)
T PRK13104 426 QADKFQAIIEDVRECG---VRKQPVLVGTVSIEASEFLSQLLKKEN-IKHQVLNAKFHEKEAQIIAEAGRPGA------- 494 (896)
T ss_pred HHHHHHHHHHHHHHHH---hCCCCEEEEeCcHHHHHHHHHHHHHcC-CCeEeecCCCChHHHHHHHhCCCCCc-------
Confidence 3449999888886532 478999999999999999999999998 99999999999999999999999972
Q ss_pred cccCCCCCcCCCCCCceeEEEEeCCCCCcCcCCCCCCCC--------------------------------------CEE
Q 028124 112 TEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISA--------------------------------------RVL 153 (213)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~rGld~~~v--------------------------------------~~V 153 (213)
|+|||++ ++||+|+.=- =+|
T Consensus 495 ------------------VtIATNm----AGRGtDI~Lggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~V 552 (896)
T PRK13104 495 ------------------VTIATNM----AGRGTDIVLGGSLAADLANLPADASEQEKEAVKKEWQKRHDEVIAAGGLRI 552 (896)
T ss_pred ------------------EEEeccC----ccCCcceecCCchhhhhhccccchhhHHHHHHHHHhhhhhhHHHHcCCCEE
Confidence 9999999 9999998621 156
Q ss_pred EEecCCCChHHHHHhhcccc--CCCCeEEEEEeCchh
Q 028124 154 INYELPTKKETYIRRMTTCL--AADGSVINIVVGGEV 188 (213)
Q Consensus 154 I~yd~P~~~~~yi~R~GR~~--~~~g~~i~~~~~~e~ 188 (213)
|--.-+.|..-=-|=.||+| |.+|.+-.|++-+|.
T Consensus 553 IgTerhesrRID~QLrGRaGRQGDPGss~f~lSleD~ 589 (896)
T PRK13104 553 IGSERHESRRIDNQLRGRAGRQGDPGSSRFYLSLEDN 589 (896)
T ss_pred EeeccCchHHHHHHhccccccCCCCCceEEEEEcCcH
Confidence 76666766555556668875 567988888876543
No 99
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.04 E-value=1.6e-09 Score=100.95 Aligned_cols=147 Identities=16% Similarity=0.180 Sum_probs=114.3
Q ss_pred HHHHHHHHHHHhhcCCCCCCcEEEEeCchHHHHHHHHHHhcc----C-C--ceEEEecCCCCHHHHHHHHHHHhcccccc
Q 028124 35 KMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNL----A-D--ISFSSLHSDLAETERTLILEEFRHTAMKW 107 (213)
Q Consensus 35 K~~~L~~ll~~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~----~-~--~~~~~lhg~~~~~~R~~~l~~Fr~g~~~~ 107 (213)
|..-...++.++.. .+-++|-||.+++-|+.+....+.. + + -.+..+.|+-..++|.++-.+.-.|
T Consensus 510 ~i~E~s~~~~~~i~---~~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~~LV~~i~SYRGGY~A~DRRKIE~~~F~G---- 582 (1034)
T KOG4150|consen 510 KVVEVSHLFAEMVQ---HGLRCIAFCPSRKLCELVLCLTREILAETAPHLVEAITSYRGGYIAEDRRKIESDLFGG---- 582 (1034)
T ss_pred HHHHHHHHHHHHHH---cCCcEEEeccHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCccchhhHHHHHHHhhCC----
Confidence 55555556655443 5789999999999999887666542 1 1 1256688899999999999998887
Q ss_pred cccccccCCCCCcCCCCCCceeEEEEeCCCCCcCcCCCCCCCCCEEEEecCCCChHHHHHhhccccCCC--CeEEEEE--
Q 028124 108 NQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAAD--GSVINIV-- 183 (213)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~rGld~~~v~~VI~yd~P~~~~~yi~R~GR~~~~~--g~~i~~~-- 183 (213)
+...+|+|++ ++-|+|+...+.|++..+|.+.+.+.|+.||+|++. +.++.++
T Consensus 583 -------------------~L~giIaTNA----LELGIDIG~LDAVl~~GFP~S~aNl~QQ~GRAGRRNk~SLavyva~~ 639 (1034)
T KOG4150|consen 583 -------------------KLCGIIATNA----LELGIDIGHLDAVLHLGFPGSIANLWQQAGRAGRRNKPSLAVYVAFL 639 (1034)
T ss_pred -------------------eeeEEEecch----hhhccccccceeEEEccCchhHHHHHHHhccccccCCCceEEEEEec
Confidence 4999999999 999999999999999999999999999999997665 3443333
Q ss_pred eCchhHHHHHHHHHhcccccccCccccc
Q 028124 184 VGGEVVTLRSMEESLGLIVAEVPINISE 211 (213)
Q Consensus 184 ~~~e~~~~~~le~~l~~~~~~~~~~~~~ 211 (213)
.+-|..++..-+..++..-.|+-+++.+
T Consensus 640 ~PVDQ~Y~~HP~~l~~~pN~EL~LD~~N 667 (1034)
T KOG4150|consen 640 GPVDQYYMSHPDKLFGSPNEELHLDSQN 667 (1034)
T ss_pred cchhhHhhcCcHHHhCCCcceeEEeccc
Confidence 3447777777777777777776666554
No 100
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.01 E-value=9.8e-09 Score=100.53 Aligned_cols=124 Identities=12% Similarity=0.132 Sum_probs=102.0
Q ss_pred cchHHHHHHHHHHHhhcCCCCCCcEEEEeCchHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhcccccccccc
Q 028124 32 LQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKV 111 (213)
Q Consensus 32 ~~~K~~~L~~ll~~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~~~~~~ 111 (213)
...|+..+.+-+..+. ..++|+||||+|...++.++..|...+ +....+|+.+++.++..+.+.|+.|
T Consensus 431 ~~~K~~Aii~ei~~~~---~~GrpVLV~t~sv~~se~ls~~L~~~g-i~~~vLnak~~~~Ea~ii~~Ag~~G-------- 498 (908)
T PRK13107 431 ADEKYQAIIKDIKDCR---ERGQPVLVGTVSIEQSELLARLMVKEK-IPHEVLNAKFHEREAEIVAQAGRTG-------- 498 (908)
T ss_pred HHHHHHHHHHHHHHHH---HcCCCEEEEeCcHHHHHHHHHHHHHCC-CCeEeccCcccHHHHHHHHhCCCCC--------
Confidence 3448988888877643 468999999999999999999999987 8999999999999999999999997
Q ss_pred cccCCCCCcCCCCCCceeEEEEeCCCCCcCcCCCCCCCC-------------------------------------CEEE
Q 028124 112 TEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISA-------------------------------------RVLI 154 (213)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~rGld~~~v-------------------------------------~~VI 154 (213)
. |+|||++ ++||+|+.=- =+||
T Consensus 499 ----------------~-VtIATnm----AGRGTDIkLggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VI 557 (908)
T PRK13107 499 ----------------A-VTIATNM----AGRGTDIVLGGNWNMEIEALENPTAEQKAKIKADWQIRHDEVVAAGGLHIL 557 (908)
T ss_pred ----------------c-EEEecCC----cCCCcceecCCchHHhhhhhcchhhHHHHHHHHHHHhhHHHHHHcCCCEEE
Confidence 2 9999999 9999998622 1677
Q ss_pred EecCCCChHHHHHhhcccc--CCCCeEEEEEeCchh
Q 028124 155 NYELPTKKETYIRRMTTCL--AADGSVINIVVGGEV 188 (213)
Q Consensus 155 ~yd~P~~~~~yi~R~GR~~--~~~g~~i~~~~~~e~ 188 (213)
--..|.|..-=-|=.||+| |.+|.+-.|++-+|.
T Consensus 558 gTerheSrRID~QLrGRaGRQGDPGss~f~lSlED~ 593 (908)
T PRK13107 558 GTERHESRRIDNQLRGRAGRQGDAGSSRFYLSMEDS 593 (908)
T ss_pred ecccCchHHHHhhhhcccccCCCCCceeEEEEeCcH
Confidence 7777776555556668875 567988888876654
No 101
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=98.78 E-value=1.2e-07 Score=94.15 Aligned_cols=121 Identities=16% Similarity=0.222 Sum_probs=102.5
Q ss_pred HHHHHHHHHHHhhcCCCCCCcEEEEeCchHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhccccccccccccc
Q 028124 35 KMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQ 114 (213)
Q Consensus 35 K~~~L~~ll~~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~~~~~~~~~ 114 (213)
|++.|.-||.++. ..+.+++||+.-.+..+-|-..|...| +.-+-|.|...-++|+.++++|....
T Consensus 1261 KLQtLAiLLqQLk---~eghRvLIfTQMtkmLDVLeqFLnyHg-ylY~RLDg~t~vEqRQaLmerFNaD~---------- 1326 (1958)
T KOG0391|consen 1261 KLQTLAILLQQLK---SEGHRVLIFTQMTKMLDVLEQFLNYHG-YLYVRLDGNTSVEQRQALMERFNADR---------- 1326 (1958)
T ss_pred hHHHHHHHHHHHH---hcCceEEehhHHHHHHHHHHHHHhhcc-eEEEEecCCccHHHHHHHHHHhcCCC----------
Confidence 8888888887753 478999999999999999999998888 78899999999999999999998873
Q ss_pred CCCCCcCCCCCCceeEEEEeCCCCCcCcCCCCCCCCCEEEEecCCCCh------HHHHHhhccccCCCCeEEEEEeCc
Q 028124 115 SGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKK------ETYIRRMTTCLAADGSVINIVVGG 186 (213)
Q Consensus 115 ~~~~~~~~~~~~~~~iLV~Td~~~~~~~rGld~~~v~~VI~yd~P~~~------~~yi~R~GR~~~~~g~~i~~~~~~ 186 (213)
.-..++++|-. .+-|+|+.++++||.||--|++ .+..||||+| ++-.+|-|+.+.
T Consensus 1327 -----------RIfcfILSTrS----ggvGiNLtgADTVvFYDsDwNPtMDaQAQDrChRIGqt--RDVHIYRLISe~ 1387 (1958)
T KOG0391|consen 1327 -----------RIFCFILSTRS----GGVGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQT--RDVHIYRLISER 1387 (1958)
T ss_pred -----------ceEEEEEeccC----CccccccccCceEEEecCCCCchhhhHHHHHHHhhcCc--cceEEEEeeccc
Confidence 12346677887 8999999999999999998875 6789999997 456777788765
No 102
>COG1204 Superfamily II helicase [General function prediction only]
Probab=98.76 E-value=1e-07 Score=93.11 Aligned_cols=107 Identities=20% Similarity=0.277 Sum_probs=86.8
Q ss_pred CCCCcEEEEeCchHHHHHHHHHHhcc-----------------CC-------------------ceEEEecCCCCHHHHH
Q 028124 51 RPGLPMIVCCSSRDELDAVCSAVSNL-----------------AD-------------------ISFSSLHSDLAETERT 94 (213)
Q Consensus 51 ~~~~~~IIF~~~~~~~~~l~~~L~~~-----------------~~-------------------~~~~~lhg~~~~~~R~ 94 (213)
..+++++|||++++.+...|..|+.. .. .-+...|.+|+.++|.
T Consensus 251 ~~~~qvLvFv~sR~~a~~~A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~e~v~~GvafHhAGL~~~~R~ 330 (766)
T COG1204 251 AEGGQVLVFVHSRKEAEKTAKKLRIKMSATLSDDEKIVLDEGASPILIPETPTSEDEELAELVLRGVAFHHAGLPREDRQ 330 (766)
T ss_pred hcCCeEEEEEecCchHHHHHHHHHHHHhhcCChhhhhhccccccccccccccccchHHHHHHHHhCccccccCCCHHHHH
Confidence 46789999999999999999999831 00 1256788999999999
Q ss_pred HHHHHHhcccccccccccccCCCCCcCCCCCCceeEEEEeCCCCCcCcCCCCCCCCCEEE----Eec-----CCCChHHH
Q 028124 95 LILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLI----NYE-----LPTKKETY 165 (213)
Q Consensus 95 ~~l~~Fr~g~~~~~~~~~~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~rGld~~~v~~VI----~yd-----~P~~~~~y 165 (213)
-+-+.|+.| +++||+||+. ++.|+|+|.-.+|| -|| .+-+.-+|
T Consensus 331 ~vE~~Fr~g-----------------------~ikVlv~TpT----LA~GVNLPA~~VIIk~~~~y~~~~g~~~i~~~dv 383 (766)
T COG1204 331 LVEDAFRKG-----------------------KIKVLVSTPT----LAAGVNLPARTVIIKDTRRYDPKGGIVDIPVLDV 383 (766)
T ss_pred HHHHHHhcC-----------------------CceEEEechH----HhhhcCCcceEEEEeeeEEEcCCCCeEECchhhH
Confidence 999999998 5999999999 99999999777766 366 45568999
Q ss_pred HHhhccccCC----CCeEEEEEe
Q 028124 166 IRRMTTCLAA----DGSVINIVV 184 (213)
Q Consensus 166 i~R~GR~~~~----~g~~i~~~~ 184 (213)
+|..||+|+- .|.++.+.+
T Consensus 384 ~QM~GRAGRPg~d~~G~~~i~~~ 406 (766)
T COG1204 384 LQMAGRAGRPGYDDYGEAIILAT 406 (766)
T ss_pred hhccCcCCCCCcCCCCcEEEEec
Confidence 9999997543 366666663
No 103
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=98.68 E-value=3e-07 Score=88.27 Aligned_cols=142 Identities=18% Similarity=0.167 Sum_probs=114.4
Q ss_pred ecCcchHHHHHHHHHHHhhcCCCCCCcEEEEeCchHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhccccccc
Q 028124 29 VDRLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWN 108 (213)
Q Consensus 29 ~~~~~~K~~~L~~ll~~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~~~ 108 (213)
+.+.- |+.+|-+||..+. ..+.+++||..-....+-|..++.-++ +...-+.|.++.++|...++.|....
T Consensus 467 v~nSG-Km~vLDkLL~~Lk---~~GhRVLIFSQmt~mLDILeDyc~~R~-y~ycRiDGSt~~eeR~~aI~~fn~~~---- 537 (971)
T KOG0385|consen 467 VTNSG-KMLVLDKLLPKLK---EQGHRVLIFSQMTRMLDILEDYCMLRG-YEYCRLDGSTSHEEREDAIEAFNAPP---- 537 (971)
T ss_pred HhcCc-ceehHHHHHHHHH---hCCCeEEEeHHHHHHHHHHHHHHHhcC-ceeEeecCCCCcHHHHHHHHhcCCCC----
Confidence 33445 9999999998764 478999999998899999999998887 79999999999999999999998863
Q ss_pred ccccccCCCCCcCCCCCCceeEEEEeCCCCCcCcCCCCCCCCCEEEEecCCCChHHHHHhhccc---c-CCCCeEEEEEe
Q 028124 109 QKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTC---L-AADGSVINIVV 184 (213)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~rGld~~~v~~VI~yd~P~~~~~yi~R~GR~---~-~~~g~~i~~~~ 184 (213)
+.+.-.|++|.+ .+-||++..+++||.||--|++..=.|-+-|| | -++-.|+.|++
T Consensus 538 ----------------s~~FiFlLSTRA----GGLGINL~aADtVIlyDSDWNPQ~DLQAmDRaHRIGQ~K~V~V~RLit 597 (971)
T KOG0385|consen 538 ----------------SEKFIFLLSTRA----GGLGINLTAADTVILYDSDWNPQVDLQAMDRAHRIGQKKPVVVYRLIT 597 (971)
T ss_pred ----------------cceEEEEEeccc----cccccccccccEEEEecCCCCchhhhHHHHHHHhhCCcCceEEEEEec
Confidence 124668999999 99999999999999999999987666655554 2 23468899998
Q ss_pred Cc--hhHHHHHHHHHhc
Q 028124 185 GG--EVVTLRSMEESLG 199 (213)
Q Consensus 185 ~~--e~~~~~~le~~l~ 199 (213)
.+ |...+++-+..+.
T Consensus 598 entVEe~IveRA~~KL~ 614 (971)
T KOG0385|consen 598 ENTVEEKIVERAAAKLR 614 (971)
T ss_pred cchHHHHHHHHHHHHhc
Confidence 86 4455555555543
No 104
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=98.67 E-value=1.5e-07 Score=93.79 Aligned_cols=138 Identities=16% Similarity=0.191 Sum_probs=114.3
Q ss_pred HHHHHHHHHHHhhcCCCCCCcEEEEeCchHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhccccccccccccc
Q 028124 35 KMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQ 114 (213)
Q Consensus 35 K~~~L~~ll~~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~~~~~~~~~ 114 (213)
|+-+|-+||-.+ +..+.++|||..=....+-|+++|..++ +..--|.|.+.-+-|++.+..|....
T Consensus 684 KlVLLDKLL~rL---k~~GHrVLIFSQMVRmLDIL~eYL~~r~-ypfQRLDGsvrgelRq~AIDhFnap~---------- 749 (1373)
T KOG0384|consen 684 KLVLLDKLLPRL---KEGGHRVLIFSQMVRMLDILAEYLSLRG-YPFQRLDGSVRGELRQQAIDHFNAPD---------- 749 (1373)
T ss_pred cEEeHHHHHHHH---hcCCceEEEhHHHHHHHHHHHHHHHHcC-CcceeccCCcchHHHHHHHHhccCCC----------
Confidence 555666677554 3468999999999999999999999998 79999999999999999999998864
Q ss_pred CCCCCcCCCCCCceeEEEEeCCCCCcCcCCCCCCCCCEEEEecCCCChHHHHHhhccc--cCCC--CeEEEEEeCc--hh
Q 028124 115 SGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTC--LAAD--GSVINIVVGG--EV 188 (213)
Q Consensus 115 ~~~~~~~~~~~~~~~iLV~Td~~~~~~~rGld~~~v~~VI~yd~P~~~~~yi~R~GR~--~~~~--g~~i~~~~~~--e~ 188 (213)
+...-+|+||-+ .+-||++..+++||.||--|++..=+|-+.|| -|+. -.+|-||+.+ |.
T Consensus 750 ----------SddFvFLLSTRA----GGLGINLatADTVIIFDSDWNPQNDLQAqARaHRIGQkk~VnVYRLVTk~TvEe 815 (1373)
T KOG0384|consen 750 ----------SDDFVFLLSTRA----GGLGINLATADTVIIFDSDWNPQNDLQAQARAHRIGQKKHVNVYRLVTKNTVEE 815 (1373)
T ss_pred ----------CCceEEEEeccc----CcccccccccceEEEeCCCCCcchHHHHHHHHHhhcccceEEEEEEecCCchHH
Confidence 235789999999 99999999999999999999998888877776 2333 5788889876 66
Q ss_pred HHHHHHHHHhcc
Q 028124 189 VTLRSMEESLGL 200 (213)
Q Consensus 189 ~~~~~le~~l~~ 200 (213)
+++.+-...++.
T Consensus 816 EilERAk~KmvL 827 (1373)
T KOG0384|consen 816 EILERAKLKMVL 827 (1373)
T ss_pred HHHHHHHHHhhh
Confidence 777776666653
No 105
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=98.65 E-value=1.5e-07 Score=91.89 Aligned_cols=115 Identities=23% Similarity=0.335 Sum_probs=94.5
Q ss_pred CCcEEEEeCchHHHHHHHHHHhcc--------------------------------------CCceEEEecCCCCHHHHH
Q 028124 53 GLPMIVCCSSRDELDAVCSAVSNL--------------------------------------ADISFSSLHSDLAETERT 94 (213)
Q Consensus 53 ~~~~IIF~~~~~~~~~l~~~L~~~--------------------------------------~~~~~~~lhg~~~~~~R~ 94 (213)
+.++||||++++.|+.+|..+.+. + .-+++.|.+++.++|.
T Consensus 460 ~~~~lvfc~sk~~ce~~a~~~~~~vpk~~~~e~~~~~~~~~s~s~~lr~~~~~ld~Vl~~ti~-~GvAyHhaGLT~eER~ 538 (1008)
T KOG0950|consen 460 GSSVLVFCPSKKNCENVASLIAKKVPKHIKSEKRLGLWELLSISNLLRRIPGILDPVLAKTIP-YGVAYHHAGLTSEERE 538 (1008)
T ss_pred CCeEEEEcCcccchHHHHHHHHHHhhHhhhhhhhhhHHHHHHHHhHhhcCCcccchHHheecc-ccceecccccccchHH
Confidence 467999999999999887555322 1 3467889999999999
Q ss_pred HHHHHHhcccccccccccccCCCCCcCCCCCCceeEEEEeCCCCCcCcCCCCCCCCCEEEEecC----CCChHHHHHhhc
Q 028124 95 LILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYEL----PTKKETYIRRMT 170 (213)
Q Consensus 95 ~~l~~Fr~g~~~~~~~~~~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~rGld~~~v~~VI~yd~----P~~~~~yi~R~G 170 (213)
.+-..||.|. ..+++||+. ++-|+++|..+++|-+.. +-+.-.|.|++|
T Consensus 539 ~iE~afr~g~-----------------------i~vl~aTST----laaGVNLPArRVIiraP~~g~~~l~~~~YkQM~G 591 (1008)
T KOG0950|consen 539 IIEAAFREGN-----------------------IFVLVATST----LAAGVNLPARRVIIRAPYVGREFLTRLEYKQMVG 591 (1008)
T ss_pred HHHHHHHhcC-----------------------eEEEEecch----hhccCcCCcceeEEeCCccccchhhhhhHHhhhh
Confidence 9999999996 999999999 999999999999987532 236789999999
Q ss_pred cccC----CCCeEEEEEeCchhHHHHHHH
Q 028124 171 TCLA----ADGSVINIVVGGEVVTLRSME 195 (213)
Q Consensus 171 R~~~----~~g~~i~~~~~~e~~~~~~le 195 (213)
|+|+ .-|.+|.++...+...+..+-
T Consensus 592 RAGR~gidT~GdsiLI~k~~e~~~~~~lv 620 (1008)
T KOG0950|consen 592 RAGRTGIDTLGDSILIIKSSEKKRVRELV 620 (1008)
T ss_pred hhhhcccccCcceEEEeeccchhHHHHHH
Confidence 9753 349999999999887776554
No 106
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=98.64 E-value=2.5e-07 Score=90.82 Aligned_cols=145 Identities=12% Similarity=0.176 Sum_probs=109.2
Q ss_pred CCCCCCCceEEEEEecCcch-HHHHHHHHHHHhhcCCCCCCcEEEEeCchHHHHHHHHHHhc--c-CCceEEEecCCCCH
Q 028124 15 SPSHFSQPRHFYVAVDRLQF-KMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSN--L-ADISFSSLHSDLAE 90 (213)
Q Consensus 15 ~~~~~~~i~~~~~~~~~~~~-K~~~L~~ll~~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~--~-~~~~~~~lhg~~~~ 90 (213)
.+...-.++-+|......++ -.+.+...+..... ...+.++||.+-..+.+..++.|.+ . +++.+..+||.|+.
T Consensus 222 i~GR~fPVei~Y~~~~~~d~~l~~ai~~~v~~~~~--~~~GdILvFLpG~~EI~~~~~~L~~~~l~~~~~i~PLy~~L~~ 299 (845)
T COG1643 222 IEGRTYPVEIRYLPEAEADYILLDAIVAAVDIHLR--EGSGSILVFLPGQREIERTAEWLEKAELGDDLEILPLYGALSA 299 (845)
T ss_pred ecCCccceEEEecCCCCcchhHHHHHHHHHHHhcc--CCCCCEEEECCcHHHHHHHHHHHHhccccCCcEEeeccccCCH
Confidence 33444457777755443443 44555555554333 4578999999999999999999987 3 24789999999999
Q ss_pred HHHHHHHHHHhcccccccccccccCCCCCcCCCCCCceeEEEEeCCCCCcCcCCCCCCCCCEEEEecCC-----------
Q 028124 91 TERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELP----------- 159 (213)
Q Consensus 91 ~~R~~~l~~Fr~g~~~~~~~~~~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~rGld~~~v~~VI~yd~P----------- 159 (213)
+++.++++---.| +.+|+++|++ ++-++.++++++||.-.+-
T Consensus 300 ~eQ~rvF~p~~~~-----------------------~RKVVlATNI----AETSLTI~gIr~VIDsG~ak~~~y~~~~g~ 352 (845)
T COG1643 300 EEQVRVFEPAPGG-----------------------KRKVVLATNI----AETSLTIPGIRYVIDSGLAKEKRYDPRTGL 352 (845)
T ss_pred HHHHhhcCCCCCC-----------------------cceEEEEccc----cccceeeCCeEEEecCCcccccccccccCc
Confidence 9998876665554 3669999999 9999999999999974322
Q ss_pred -------CChHHHHHhhccccCC-CCeEEEEEeCchh
Q 028124 160 -------TKKETYIRRMTTCLAA-DGSVINIVVGGEV 188 (213)
Q Consensus 160 -------~~~~~yi~R~GR~~~~-~g~~i~~~~~~e~ 188 (213)
-|-++-.||.||||+- +|.||-+++.++.
T Consensus 353 ~~L~~~~ISqAsA~QRaGRAGR~~pGicyRLyse~~~ 389 (845)
T COG1643 353 TRLETEPISKASADQRAGRAGRTGPGICYRLYSEEDF 389 (845)
T ss_pred eeeeEEEechhhhhhhccccccCCCceEEEecCHHHH
Confidence 2557889999999865 5999999997544
No 107
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=98.62 E-value=7.7e-07 Score=86.33 Aligned_cols=126 Identities=14% Similarity=0.135 Sum_probs=98.9
Q ss_pred hHHHHHHHHHHHhhcCCCCCCcEEEEeCchHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhcccccccccccc
Q 028124 34 FKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTE 113 (213)
Q Consensus 34 ~K~~~L~~ll~~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~~~~~~~~ 113 (213)
.|+..|..++.... +....++++-.|.+.+.+.+.+..+-+| +.+..+||.|+..+|+.+++.|....
T Consensus 578 ~kl~~L~~ll~~~~--ek~~~~~v~Isny~~tldl~e~~~~~~g-~~~~rLdG~~~~~qRq~~vd~FN~p~--------- 645 (776)
T KOG0390|consen 578 GKLLVLVFLLEVIR--EKLLVKSVLISNYTQTLDLFEQLCRWRG-YEVLRLDGKTSIKQRQKLVDTFNDPE--------- 645 (776)
T ss_pred hHHHHHHHHHHHHh--hhcceEEEEeccHHHHHHHHHHHHhhcC-ceEEEEcCCCchHHHHHHHHhccCCC---------
Confidence 37788888774422 1334555666677777777777777776 89999999999999999999998864
Q ss_pred cCCCCCcCCCCCCceeEEEEeCCCCCcCcCCCCCCCCCEEEEecCCCChHHHHHhhccc--cCCC--CeEEEEEeCc
Q 028124 114 QSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTC--LAAD--GSVINIVVGG 186 (213)
Q Consensus 114 ~~~~~~~~~~~~~~~~iLV~Td~~~~~~~rGld~~~v~~VI~yd~P~~~~~yi~R~GR~--~~~~--g~~i~~~~~~ 186 (213)
+...-.|.+|-+ .+.||++-+++-||.||+.|+++.=.|-++|+ .|+. -.+|-|++.+
T Consensus 646 -----------~~~~vfLlSsKA----gg~GinLiGAsRlil~D~dWNPa~d~QAmaR~~RdGQKk~v~iYrLlatG 707 (776)
T KOG0390|consen 646 -----------SPSFVFLLSSKA----GGEGLNLIGASRLILFDPDWNPAVDQQAMARAWRDGQKKPVYIYRLLATG 707 (776)
T ss_pred -----------CCceEEEEeccc----ccCceeecccceEEEeCCCCCchhHHHHHHHhccCCCcceEEEEEeecCC
Confidence 112447778889 79999999999999999999999999999995 5554 5777788765
No 108
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=98.60 E-value=2.4e-07 Score=90.50 Aligned_cols=107 Identities=17% Similarity=0.225 Sum_probs=85.6
Q ss_pred CCCCcEEEEeCchHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhcccccccccccccCCCCCcCCCCCCceeE
Q 028124 51 RPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHM 130 (213)
Q Consensus 51 ~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~~~~~~~~~~~~~~~~~~~~~~~~i 130 (213)
..+.+++|-|||+..|.+++..|+..+. .+..+||.+...+|.+.+++++.-- ..+...|
T Consensus 438 ~~~~kvlvI~NTV~~Aie~Y~~Lk~~~~-~v~LlHSRf~~~dR~~ke~~l~~~~-------------------~~~~~~I 497 (733)
T COG1203 438 KEGKKVLVIVNTVDRAIELYEKLKEKGP-KVLLLHSRFTLKDREEKERELKKLF-------------------KQNEGFI 497 (733)
T ss_pred ccCCcEEEEEecHHHHHHHHHHHHhcCC-CEEEEecccchhhHHHHHHHHHHHH-------------------hccCCeE
Confidence 5689999999999999999999999874 7999999999999999998766410 0014789
Q ss_pred EEEeCCCCCcCcCCCCCCCCCEEEEecCCCChHHHHHhhcccc--C--CCCeEEEEEe
Q 028124 131 IVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCL--A--ADGSVINIVV 184 (213)
Q Consensus 131 LV~Td~~~~~~~rGld~~~v~~VI~yd~P~~~~~yi~R~GR~~--~--~~g~~i~~~~ 184 (213)
+|+|.+ .+-|+|+. .+++|-==.| +++.+||+||+. | ..|.++.+..
T Consensus 498 vVaTQV----IEagvDid-fd~mITe~aP--idSLIQR~GRv~R~g~~~~~~~~v~~~ 548 (733)
T COG1203 498 VVATQV----IEAGVDID-FDVLITELAP--IDSLIQRAGRVNRHGKKENGKIYVYND 548 (733)
T ss_pred EEEeeE----EEEEeccc-cCeeeecCCC--HHHHHHHHHHHhhcccccCCceeEeec
Confidence 999999 99999976 7777764444 899999999973 3 2456665554
No 109
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=98.52 E-value=2e-06 Score=79.50 Aligned_cols=136 Identities=17% Similarity=0.199 Sum_probs=103.6
Q ss_pred HHHHHHHHHHH-hhcCCCCCCcEEEEeCchHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhcccccccccccc
Q 028124 35 KMETLVELLHL-VVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTE 113 (213)
Q Consensus 35 K~~~L~~ll~~-~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~~~~~~~~ 113 (213)
|...+++-|.. .+-...+..+++|||......+.+...+.+++ +..+-+.|..+..+|..+.++|+..+
T Consensus 473 K~~av~eyi~~~~~l~d~~~~KflVFaHH~~vLd~Iq~~~~~r~-vg~IRIDGst~s~~R~ll~qsFQ~se--------- 542 (689)
T KOG1000|consen 473 KAAAVCEYILENYFLPDAPPRKFLVFAHHQIVLDTIQVEVNKRK-VGSIRIDGSTPSHRRTLLCQSFQTSE--------- 542 (689)
T ss_pred ccHHHHHHHHhCcccccCCCceEEEEehhHHHHHHHHHHHHHcC-CCeEEecCCCCchhHHHHHHHhcccc---------
Confidence 55555554433 11124678999999999999999999999886 89999999999999999999999864
Q ss_pred cCCCCCcCCCCCCcee-EEEEeCCCCCcCcCCCCCCCCCEEEEecCCCCh------HHHHHhhccccCCCCeEEEEEeCc
Q 028124 114 QSGDESETGKDEHKSH-MIVVTDACLPLLSSGESAISARVLINYELPTKK------ETYIRRMTTCLAADGSVINIVVGG 186 (213)
Q Consensus 114 ~~~~~~~~~~~~~~~~-iLV~Td~~~~~~~rGld~~~v~~VI~yd~P~~~------~~yi~R~GR~~~~~g~~i~~~~~~ 186 (213)
... .+++-.+ ++.|+++..++.||...+||++ ++-+||+|.. +.-.++.||..+
T Consensus 543 -------------ev~VAvlsItA----~gvGLt~tAa~~VVFaEL~wnPgvLlQAEDRaHRiGQk--ssV~v~ylvAKg 603 (689)
T KOG1000|consen 543 -------------EVRVAVLSITA----AGVGLTLTAASVVVFAELHWNPGVLLQAEDRAHRIGQK--SSVFVQYLVAKG 603 (689)
T ss_pred -------------ceEEEEEEEee----cccceeeeccceEEEEEecCCCceEEechhhhhhcccc--ceeeEEEEEecC
Confidence 233 3444555 7999999999999999999986 6667777754 223456666654
Q ss_pred --hhHHHHHHHHHhc
Q 028124 187 --EVVTLRSMEESLG 199 (213)
Q Consensus 187 --e~~~~~~le~~l~ 199 (213)
|...+..+.+.+.
T Consensus 604 T~Ddy~Wp~l~~KL~ 618 (689)
T KOG1000|consen 604 TADDYMWPMLQQKLD 618 (689)
T ss_pred chHHHHHHHHHHHHH
Confidence 6777777777664
No 110
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=98.51 E-value=3e-06 Score=81.69 Aligned_cols=123 Identities=17% Similarity=0.203 Sum_probs=106.0
Q ss_pred hHHHHHHHHHHHhhcCCCCCCcEEEEeCchHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhcccccccccccc
Q 028124 34 FKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTE 113 (213)
Q Consensus 34 ~K~~~L~~ll~~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~~~~~~~~ 113 (213)
-|.+.|..||..+. .++.+++||.......+-|-..|...+ ++..-+.|...-.+|+.++.+|-...
T Consensus 761 gK~r~L~~LLp~~k---~~G~RVLiFSQFTqmLDILE~~L~~l~-~~ylRLDGsTqV~~RQ~lId~Fn~d~--------- 827 (941)
T KOG0389|consen 761 GKCRKLKELLPKIK---KKGDRVLIFSQFTQMLDILEVVLDTLG-YKYLRLDGSTQVNDRQDLIDEFNTDK--------- 827 (941)
T ss_pred hhHhHHHHHHHHHh---hcCCEEEEeeHHHHHHHHHHHHHHhcC-ceEEeecCCccchHHHHHHHhhccCC---------
Confidence 39999999998753 467999999999999999999999987 89999999999999999999998864
Q ss_pred cCCCCCcCCCCCCceeEEEEeCCCCCcCcCCCCCCCCCEEEEecCCCC------hHHHHHhhccccCCCCeEEEEEeCch
Q 028124 114 QSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTK------KETYIRRMTTCLAADGSVINIVVGGE 187 (213)
Q Consensus 114 ~~~~~~~~~~~~~~~~iLV~Td~~~~~~~rGld~~~v~~VI~yd~P~~------~~~yi~R~GR~~~~~g~~i~~~~~~e 187 (213)
.-.-+|++|-+ .+-||++..+++||.||+-.+ .++..||+|.+ ++-.++.+++.+.
T Consensus 828 ------------difVFLLSTKA----GG~GINLt~An~VIihD~dFNP~dD~QAEDRcHRvGQt--kpVtV~rLItk~T 889 (941)
T KOG0389|consen 828 ------------DIFVFLLSTKA----GGFGINLTCANTVIIHDIDFNPYDDKQAEDRCHRVGQT--KPVTVYRLITKST 889 (941)
T ss_pred ------------ceEEEEEeecc----CcceecccccceEEEeecCCCCcccchhHHHHHhhCCc--ceeEEEEEEecCc
Confidence 22347889999 999999999999999997654 58888888875 5678999998763
No 111
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=98.46 E-value=2e-06 Score=80.29 Aligned_cols=122 Identities=16% Similarity=0.201 Sum_probs=87.2
Q ss_pred CCCCcEEEEeCchHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhcccccccccccccCCCCCcCCCCCCceeE
Q 028124 51 RPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHM 130 (213)
Q Consensus 51 ~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~~~~~~~~~~~~~~~~~~~~~~~~i 130 (213)
.++..++-| +++..-.+...+.+.++.++.+++|++|++.|.+--..|.+.+ +..+|
T Consensus 356 k~GDCvV~F--Skk~I~~~k~kIE~~g~~k~aVIYGsLPPeTr~aQA~~FNd~~---------------------~e~dv 412 (700)
T KOG0953|consen 356 KPGDCVVAF--SKKDIFTVKKKIEKAGNHKCAVIYGSLPPETRLAQAALFNDPS---------------------NECDV 412 (700)
T ss_pred CCCCeEEEe--ehhhHHHHHHHHHHhcCcceEEEecCCCCchhHHHHHHhCCCC---------------------Cccce
Confidence 445444444 6778899999998888777999999999999999999998864 35999
Q ss_pred EEEeCCCCCcCcCCCCCCCCCEEEEecCC---------CChHHHHHhhccccCCC-----CeEEEEEeCchhHHHHHHHH
Q 028124 131 IVVTDACLPLLSSGESAISARVLINYELP---------TKKETYIRRMTTCLAAD-----GSVINIVVGGEVVTLRSMEE 196 (213)
Q Consensus 131 LV~Td~~~~~~~rGld~~~v~~VI~yd~P---------~~~~~yi~R~GR~~~~~-----g~~i~~~~~~e~~~~~~le~ 196 (213)
|||||+ .++|+++. ++-||.|++- -+...-.|-+||+|+-. |.+.++-. +.+..+.+
T Consensus 413 lVAsDA----IGMGLNL~-IrRiiF~sl~Kysg~e~~~it~sqikQIAGRAGRf~s~~~~G~vTtl~~----eDL~~L~~ 483 (700)
T KOG0953|consen 413 LVASDA----IGMGLNLN-IRRIIFYSLIKYSGRETEDITVSQIKQIAGRAGRFGSKYPQGEVTTLHS----EDLKLLKR 483 (700)
T ss_pred EEeecc----cccccccc-eeEEEEeecccCCcccceeccHHHHHHHhhcccccccCCcCceEEEeeH----hhHHHHHH
Confidence 999999 99999976 6777777644 24566678778865432 55555433 33444444
Q ss_pred Hhcccccc
Q 028124 197 SLGLIVAE 204 (213)
Q Consensus 197 ~l~~~~~~ 204 (213)
.+....++
T Consensus 484 ~l~~p~ep 491 (700)
T KOG0953|consen 484 ILKRPVEP 491 (700)
T ss_pred HHhCCchH
Confidence 44444443
No 112
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=98.43 E-value=2.7e-06 Score=78.64 Aligned_cols=124 Identities=17% Similarity=0.166 Sum_probs=103.6
Q ss_pred chHHHHHHHHHHHhhcCCCCCCcEEEEeCchHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhccccccccccc
Q 028124 33 QFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVT 112 (213)
Q Consensus 33 ~~K~~~L~~ll~~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~~~~~~~ 112 (213)
..|+++|.+-|..+.. +....+.|||.......+.+...|.+.| +.++.+-|+|++..|...++.|++..
T Consensus 619 STKIEAL~EEl~~l~~-rd~t~KsIVFSQFTSmLDLi~~rL~kaG-fscVkL~GsMs~~ardatik~F~nd~-------- 688 (791)
T KOG1002|consen 619 STKIEALVEELYFLRE-RDRTAKSIVFSQFTSMLDLIEWRLGKAG-FSCVKLVGSMSPAARDATIKYFKNDI-------- 688 (791)
T ss_pred hhHHHHHHHHHHHHHH-cccchhhhhHHHHHHHHHHHHHHhhccC-ceEEEeccCCChHHHHHHHHHhccCC--------
Confidence 3499999998876655 5567899999999999999999999988 89999999999999999999999973
Q ss_pred ccCCCCCcCCCCCCcee-EEEEeCCCCCcCcCCCCCCCCCEEEEecCCCCh------HHHHHhhccccCCCCeEEEEEeC
Q 028124 113 EQSGDESETGKDEHKSH-MIVVTDACLPLLSSGESAISARVLINYELPTKK------ETYIRRMTTCLAADGSVINIVVG 185 (213)
Q Consensus 113 ~~~~~~~~~~~~~~~~~-iLV~Td~~~~~~~rGld~~~v~~VI~yd~P~~~------~~yi~R~GR~~~~~g~~i~~~~~ 185 (213)
.++ +|++-.+ .+-.+++..++.|.+.|+=|++ .+.+||+|.+ ++-.++.|+-+
T Consensus 689 --------------~c~vfLvSLkA----GGVALNLteASqVFmmDPWWNpaVe~Qa~DRiHRIGQ~--rPvkvvrf~iE 748 (791)
T KOG1002|consen 689 --------------DCRVFLVSLKA----GGVALNLTEASQVFMMDPWWNPAVEWQAQDRIHRIGQY--RPVKVVRFCIE 748 (791)
T ss_pred --------------CeEEEEEEecc----CceEeeechhceeEeecccccHHHHhhhhhhHHhhcCc--cceeEEEeehh
Confidence 355 5666677 7888999999999999987765 5667888765 56678888876
Q ss_pred c
Q 028124 186 G 186 (213)
Q Consensus 186 ~ 186 (213)
+
T Consensus 749 n 749 (791)
T KOG1002|consen 749 N 749 (791)
T ss_pred c
Confidence 5
No 113
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=98.41 E-value=1.9e-06 Score=81.65 Aligned_cols=146 Identities=14% Similarity=0.248 Sum_probs=111.2
Q ss_pred CCCCCCCCceEEEEEecCcchHHHHHHHHHHHhhcCCCCCCcEEEEeCchHHHHHHHHHHhcc----CC---ceEEEecC
Q 028124 14 QSPSHFSQPRHFYVAVDRLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNL----AD---ISFSSLHS 86 (213)
Q Consensus 14 ~~~~~~~~i~~~~~~~~~~~~K~~~L~~ll~~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~----~~---~~~~~lhg 86 (213)
.-+...-.|+.+|..-+..+.--+.+.-.++-... .+.+-++||-..+++.+.+++.|.+. +. .....+||
T Consensus 221 ~i~GR~fPVei~y~~~p~~dYv~a~~~tv~~Ih~~--E~~GDILvFLtGqeEIe~~~~~l~e~~~~~~~~~~~~~lply~ 298 (674)
T KOG0922|consen 221 TIPGRTFPVEILYLKEPTADYVDAALITVIQIHLT--EPPGDILVFLTGQEEIEAACELLRERAKSLPEDCPELILPLYG 298 (674)
T ss_pred eecCCCCceeEEeccCCchhhHHHHHHHHHHHHcc--CCCCCEEEEeCCHHHHHHHHHHHHHHhhhccccCcceeeeecc
Confidence 33444556888888766666455555555443222 56679999999999999999999765 11 13567999
Q ss_pred CCCHHHHHHHHHHHhcccccccccccccCCCCCcCCCCCCceeEEEEeCCCCCcCcCCCCCCCCCEEEE--------ecC
Q 028124 87 DLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLIN--------YEL 158 (213)
Q Consensus 87 ~~~~~~R~~~l~~Fr~g~~~~~~~~~~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~rGld~~~v~~VI~--------yd~ 158 (213)
.|+.+++.++++.--.| ..+++++|++ ++-.+.++++.+||. |++
T Consensus 299 aL~~e~Q~rvF~p~p~g-----------------------~RKvIlsTNI----AETSlTI~GI~YVVDsG~vK~~~y~p 351 (674)
T KOG0922|consen 299 ALPSEEQSRVFDPAPPG-----------------------KRKVILSTNI----AETSLTIDGIRYVVDSGFVKQKKYNP 351 (674)
T ss_pred cCCHHHhhccccCCCCC-----------------------cceEEEEcce----eeeeEEecceEEEEcCCceEEEeecc
Confidence 99999998887766665 4899999999 999999999999996 332
Q ss_pred ----------CCChHHHHHhhccccCC-CCeEEEEEeCchh
Q 028124 159 ----------PTKKETYIRRMTTCLAA-DGSVINIVVGGEV 188 (213)
Q Consensus 159 ----------P~~~~~yi~R~GR~~~~-~g~~i~~~~~~e~ 188 (213)
|-|.+.-.||.||+|+. +|.|+-++++.+.
T Consensus 352 ~~g~~~L~v~~ISkasA~QRaGRAGRt~pGkcyRLYte~~~ 392 (674)
T KOG0922|consen 352 RTGLDSLIVVPISKASANQRAGRAGRTGPGKCYRLYTESAY 392 (674)
T ss_pred ccCccceeEEechHHHHhhhcccCCCCCCceEEEeeeHHHH
Confidence 44678889999999765 5999999987554
No 114
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=98.41 E-value=5.3e-06 Score=80.03 Aligned_cols=123 Identities=17% Similarity=0.202 Sum_probs=103.6
Q ss_pred HHHHHHHHHHHhhcCCCCCCcEEEEeCchHHHHHHHHHHhc-cCCceEEEecCCCCHHHHHHHHHHHhcccccccccccc
Q 028124 35 KMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSN-LADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTE 113 (213)
Q Consensus 35 K~~~L~~ll~~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~-~~~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~~~~~~~~ 113 (213)
|++++..+|+.-. ..+.+++.|..++...+.|-..|.. .+ +...-+.|..+-..|..++.+|..++
T Consensus 531 Km~vl~~ll~~W~---kqg~rvllFsqs~~mLdilE~fL~~~~~-ysylRmDGtT~~~~R~~lVd~Fne~~--------- 597 (923)
T KOG0387|consen 531 KMKVLAKLLKDWK---KQGDRVLLFSQSRQMLDILESFLRRAKG-YSYLRMDGTTPAALRQKLVDRFNEDE--------- 597 (923)
T ss_pred hHHHHHHHHHHHh---hCCCEEEEehhHHHHHHHHHHHHHhcCC-ceEEEecCCCccchhhHHHHhhcCCC---------
Confidence 9999999997632 3678999999999999999999984 55 89999999999999999999999875
Q ss_pred cCCCCCcCCCCCCceeEEEEeCCCCCcCcCCCCCCCCCEEEEecCCCChHHHHHhhccc--cCC-C-CeEEEEEeCc
Q 028124 114 QSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTC--LAA-D-GSVINIVVGG 186 (213)
Q Consensus 114 ~~~~~~~~~~~~~~~~iLV~Td~~~~~~~rGld~~~v~~VI~yd~P~~~~~yi~R~GR~--~~~-~-g~~i~~~~~~ 186 (213)
...-+|++|-+ .+-|+++..++-||.||+-|++.+=.|-.-|+ .|+ . -.+|-|++.+
T Consensus 598 ------------s~~VFLLTTrv----GGLGlNLTgAnRVIIfDPdWNPStD~QAreRawRiGQkkdV~VYRL~t~g 658 (923)
T KOG0387|consen 598 ------------SIFVFLLTTRV----GGLGLNLTGANRVIIFDPDWNPSTDNQARERAWRIGQKKDVVVYRLMTAG 658 (923)
T ss_pred ------------ceEEEEEEecc----cccccccccCceEEEECCCCCCccchHHHHHHHhhcCccceEEEEEecCC
Confidence 22347899999 99999999999999999999998888866664 333 3 4666788775
No 115
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=98.41 E-value=7.1e-06 Score=80.26 Aligned_cols=125 Identities=15% Similarity=0.237 Sum_probs=104.7
Q ss_pred hHHHHHHHHH-HHhhcCCCCCC--cEEEEeCchHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhccccccccc
Q 028124 34 FKMETLVELL-HLVVAGRRPGL--PMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQK 110 (213)
Q Consensus 34 ~K~~~L~~ll-~~~~~~~~~~~--~~IIF~~~~~~~~~l~~~L~~~~~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~~~~~ 110 (213)
.|+..+.+++ ..+. ..+. +++||++.....+.+...|...+ +....++|.++.+.|...+++|.+++
T Consensus 692 ~k~~~l~~ll~~~~~---~~~~~~kvlifsq~t~~l~il~~~l~~~~-~~~~~ldG~~~~~~r~~~i~~f~~~~------ 761 (866)
T COG0553 692 GKLQALDELLLDKLL---EEGHYHKVLIFSQFTPVLDLLEDYLKALG-IKYVRLDGSTPAKRRQELIDRFNADE------ 761 (866)
T ss_pred hHHHHHHHHHHHHHH---hhcccccEEEEeCcHHHHHHHHHHHHhcC-CcEEEEeCCCChhhHHHHHHHhhcCC------
Confidence 4899998888 4432 3455 99999999999999999999987 78999999999999999999999963
Q ss_pred ccccCCCCCcCCCCCCceeEEEEeCCCCCcCcCCCCCCCCCEEEEecCCCChHHHHHhhccc--cCCC--CeEEEEEeCc
Q 028124 111 VTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTC--LAAD--GSVINIVVGG 186 (213)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~rGld~~~v~~VI~yd~P~~~~~yi~R~GR~--~~~~--g~~i~~~~~~ 186 (213)
...-+++++.+ .+.|+++..+++||+||..|++....|.+.|+ .|+. -.++.++..+
T Consensus 762 ---------------~~~v~lls~ka----gg~glnLt~a~~vi~~d~~wnp~~~~Qa~dRa~RigQ~~~v~v~r~i~~~ 822 (866)
T COG0553 762 ---------------EEKVFLLSLKA----GGLGLNLTGADTVILFDPWWNPAVELQAIDRAHRIGQKRPVKVYRLITRG 822 (866)
T ss_pred ---------------CCceEEEEecc----cccceeecccceEEEeccccChHHHHHHHHHHHHhcCcceeEEEEeecCC
Confidence 13557788889 99999999999999999999999998888885 2333 4777788765
Q ss_pred h
Q 028124 187 E 187 (213)
Q Consensus 187 e 187 (213)
.
T Consensus 823 t 823 (866)
T COG0553 823 T 823 (866)
T ss_pred c
Confidence 3
No 116
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=98.40 E-value=2.4e-06 Score=83.82 Aligned_cols=119 Identities=17% Similarity=0.246 Sum_probs=89.2
Q ss_pred HHHHHHHHhhcCCCCCCcEEEEeCchHHHHHHHHHHhccC-----------------------C---------------c
Q 028124 38 TLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLA-----------------------D---------------I 79 (213)
Q Consensus 38 ~L~~ll~~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~-----------------------~---------------~ 79 (213)
...+++..+.. .+-.|+||||=+++.|++-+++|.... . -
T Consensus 554 ~~l~lin~L~k--~~lLP~VvFvFSkkrCde~a~~L~~~nL~~~~EKseV~lfl~k~~~rLk~~DR~LPQvl~m~~ll~R 631 (1248)
T KOG0947|consen 554 TWLDLINHLRK--KNLLPVVVFVFSKKRCDEYADYLTNLNLTDSKEKSEVHLFLSKAVARLKGEDRNLPQVLSMRSLLLR 631 (1248)
T ss_pred hHHHHHHHHhh--cccCceEEEEEccccHHHHHHHHhccCcccchhHHHHHHHHHHHHHhcChhhccchHHHHHHHHHhh
Confidence 45566655443 567899999999999999999886540 0 1
Q ss_pred eEEEecCCCCHHHHHHHHHHHhcccccccccccccCCCCCcCCCCCCceeEEEEeCCCCCcCcCCCCCCCCCEEEEecCC
Q 028124 80 SFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELP 159 (213)
Q Consensus 80 ~~~~lhg~~~~~~R~~~l~~Fr~g~~~~~~~~~~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~rGld~~~v~~VI~yd~P 159 (213)
-+++.||++=+--+.-+-.-|..|- +++|+||+. ++.|++.|.-.+|+ -.+-
T Consensus 632 GiaVHH~GlLPivKE~VE~LFqrGl-----------------------VKVLFATET----FAMGVNMPARtvVF-~Sl~ 683 (1248)
T KOG0947|consen 632 GIAVHHGGLLPIVKEVVELLFQRGL-----------------------VKVLFATET----FAMGVNMPARTVVF-SSLR 683 (1248)
T ss_pred cchhhcccchHHHHHHHHHHHhcCc-----------------------eEEEeehhh----hhhhcCCCceeEEe-eehh
Confidence 1566788877777666777799984 999999999 99999999655554 3332
Q ss_pred C---------ChHHHHHhhccccCCC----CeEEEEEeCc
Q 028124 160 T---------KKETYIRRMTTCLAAD----GSVINIVVGG 186 (213)
Q Consensus 160 ~---------~~~~yi~R~GR~~~~~----g~~i~~~~~~ 186 (213)
. .+-.|.|.+||+|++. |.+|.++...
T Consensus 684 KhDG~efR~L~PGEytQMAGRAGRRGlD~tGTVii~~~~~ 723 (1248)
T KOG0947|consen 684 KHDGNEFRELLPGEYTQMAGRAGRRGLDETGTVIIMCKDS 723 (1248)
T ss_pred hccCcceeecCChhHHhhhccccccccCcCceEEEEecCC
Confidence 2 4689999999986554 9999988754
No 117
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=98.36 E-value=9.1e-06 Score=81.44 Aligned_cols=128 Identities=16% Similarity=0.251 Sum_probs=99.6
Q ss_pred chHHHHHHHHHHHhhcCC-----------CCCCcEEEEeCchHHHHHHHHHHhcc--CCceEEEecCCCCHHHHHHHHHH
Q 028124 33 QFKMETLVELLHLVVAGR-----------RPGLPMIVCCSSRDELDAVCSAVSNL--ADISFSSLHSDLAETERTLILEE 99 (213)
Q Consensus 33 ~~K~~~L~~ll~~~~~~~-----------~~~~~~IIF~~~~~~~~~l~~~L~~~--~~~~~~~lhg~~~~~~R~~~l~~ 99 (213)
..|+.+|.++|.+--.+. -.+.|++|||.-++.++.+-+-|.+. +.+.-.-+.|..++.+|.+++++
T Consensus 1309 spKl~AL~qLL~eCGig~~~~~~~g~~s~vsqHRiLIFcQlK~mlDlVekDL~k~~mpsVtymRLDGSVpp~~R~kiV~~ 1388 (1549)
T KOG0392|consen 1309 SPKLSALKQLLSECGIGNNSDSEVGTPSDVSQHRILIFCQLKSMLDLVEKDLFKKYMPSVTYMRLDGSVPPGDRQKIVER 1388 (1549)
T ss_pred chhHHHHHHHHHHhCCCCCCcccccCcchhccceeEEeeeHHHHHHHHHHHHhhhhcCceeEEEecCCCCcHHHHHHHHH
Confidence 459999999997521111 13589999999999999999988654 43445579999999999999999
Q ss_pred HhcccccccccccccCCCCCcCCCCCCceeEE-EEeCCCCCcCcCCCCCCCCCEEEEecCCCChHHHHHhhccc--cCCC
Q 028124 100 FRHTAMKWNQKVTEQSGDESETGKDEHKSHMI-VVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTC--LAAD 176 (213)
Q Consensus 100 Fr~g~~~~~~~~~~~~~~~~~~~~~~~~~~iL-V~Td~~~~~~~rGld~~~v~~VI~yd~P~~~~~yi~R~GR~--~~~~ 176 (213)
|.++. ++++| .+|-+ .+-|+++.++++||.++=-|++..=.|-+-|+ -|+.
T Consensus 1389 FN~Dp----------------------tIDvLlLTThV----GGLGLNLTGADTVVFvEHDWNPMrDLQAMDRAHRIGQK 1442 (1549)
T KOG0392|consen 1389 FNEDP----------------------TIDVLLLTTHV----GGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIGQK 1442 (1549)
T ss_pred hcCCC----------------------ceeEEEEeeec----cccccccCCCceEEEEecCCCchhhHHHHHHHHhhcCc
Confidence 99984 68755 56778 99999999999999999999987777777775 3333
Q ss_pred --CeEEEEEeCc
Q 028124 177 --GSVINIVVGG 186 (213)
Q Consensus 177 --g~~i~~~~~~ 186 (213)
-.|+-+++.+
T Consensus 1443 rvVNVyRlItrG 1454 (1549)
T KOG0392|consen 1443 RVVNVYRLITRG 1454 (1549)
T ss_pred eeeeeeeehhcc
Confidence 3455566655
No 118
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=98.32 E-value=8.2e-06 Score=81.98 Aligned_cols=147 Identities=18% Similarity=0.208 Sum_probs=104.5
Q ss_pred CCCCceEEEEEecCc--chHHHHHHHHH-HHhhcCCCCCCcEEEEeCchHHHHHHHHHHhcc------------------
Q 028124 18 HFSQPRHFYVAVDRL--QFKMETLVELL-HLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNL------------------ 76 (213)
Q Consensus 18 ~~~~i~~~~~~~~~~--~~K~~~L~~ll-~~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~------------------ 76 (213)
.+-.++|.|+-+... ..++++..+.. +.+.. .....|+|||+.+++++.+.|.+++..
T Consensus 509 RpvPL~qq~Igi~ek~~~~~~qamNe~~yeKVm~-~agk~qVLVFVHsRkET~ktA~aIRd~~le~dtls~fmre~s~s~ 587 (1674)
T KOG0951|consen 509 RPVPLKQQYIGITEKKPLKRFQAMNEACYEKVLE-HAGKNQVLVFVHSRKETAKTARAIRDKALEEDTLSRFMREDSASR 587 (1674)
T ss_pred CcCCccceEeccccCCchHHHHHHHHHHHHHHHH-hCCCCcEEEEEEechHHHHHHHHHHHHHhhhhHHHHHHhcccchh
Confidence 345588888766543 33444443332 22222 133489999999999998888877611
Q ss_pred -------------------CCceEEEecCCCCHHHHHHHHHHHhcccccccccccccCCCCCcCCCCCCceeEEEEeCCC
Q 028124 77 -------------------ADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDAC 137 (213)
Q Consensus 77 -------------------~~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~~~~~~~~~~~~~~~~~~~~~~~~iLV~Td~~ 137 (213)
+ +.++..|.||+..+|..+-..|+.|. +++||+|..
T Consensus 588 eilrtea~~~kn~dLkdLLp-ygfaIHhAGl~R~dR~~~EdLf~~g~-----------------------iqvlvstat- 642 (1674)
T KOG0951|consen 588 EILRTEAGQAKNPDLKDLLP-YGFAIHHAGLNRKDRELVEDLFADGH-----------------------IQVLVSTAT- 642 (1674)
T ss_pred hhhhhhhhcccChhHHHHhh-ccceeeccCCCcchHHHHHHHHhcCc-----------------------eeEEEeehh-
Confidence 2 45788999999999999999999985 999999999
Q ss_pred CCcCcCCCCCCCCCEEEE----ecCC------CChHHHHHhhccccCC----CCeEEEEEeCchhHHHHH
Q 028124 138 LPLLSSGESAISARVLIN----YELP------TKKETYIRRMTTCLAA----DGSVINIVVGGEVVTLRS 193 (213)
Q Consensus 138 ~~~~~rGld~~~v~~VI~----yd~P------~~~~~yi~R~GR~~~~----~g~~i~~~~~~e~~~~~~ 193 (213)
++.|+++|.=.++|- ||+- -++-+-.|+.||+|+. .|..|..-...+...+..
T Consensus 643 ---lawgvnlpahtViikgtqvy~pekg~w~elsp~dv~qmlgragrp~~D~~gegiiit~~se~qyyls 709 (1674)
T KOG0951|consen 643 ---LAWGVNLPAHTVIIKGTQVYDPEKGRWTELSPLDVMQMLGRAGRPQYDTCGEGIIITDHSELQYYLS 709 (1674)
T ss_pred ---hhhhcCCCcceEEecCccccCcccCccccCCHHHHHHHHhhcCCCccCcCCceeeccCchHhhhhHH
Confidence 999999997776663 6643 3688999999998644 366665555555554444
No 119
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=98.25 E-value=8e-06 Score=78.27 Aligned_cols=123 Identities=16% Similarity=0.200 Sum_probs=105.5
Q ss_pred hHHHHHHHHHHHhhcCCCCCCcEEEEeCchHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhcccccccccccc
Q 028124 34 FKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTE 113 (213)
Q Consensus 34 ~K~~~L~~ll~~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~~~~~~~~ 113 (213)
-|+..|-+||..+. ..+.++++|..-.+..+.+-++|..++ +.-.-+.|.....+|..++.+|+..+
T Consensus 1028 gKL~~LDeLL~kLk---aegHRvL~yfQMTkM~dl~EdYl~yr~-Y~ylRLDGSsk~~dRrd~vrDwQ~sd--------- 1094 (1185)
T KOG0388|consen 1028 GKLVVLDELLPKLK---AEGHRVLMYFQMTKMIDLIEDYLVYRG-YTYLRLDGSSKASDRRDVVRDWQASD--------- 1094 (1185)
T ss_pred cceeeHHHHHHHhh---cCCceEEehhHHHHHHHHHHHHHHhhc-cceEEecCcchhhHHHHHHhhccCCc---------
Confidence 38999999998764 368999999999999999999999988 79999999999999999999999964
Q ss_pred cCCCCCcCCCCCCceeEEEEeCCCCCcCcCCCCCCCCCEEEEecCCCChHHHHHhhccc--cCC--CCeEEEEEeCc
Q 028124 114 QSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTC--LAA--DGSVINIVVGG 186 (213)
Q Consensus 114 ~~~~~~~~~~~~~~~~iLV~Td~~~~~~~rGld~~~v~~VI~yd~P~~~~~yi~R~GR~--~~~--~g~~i~~~~~~ 186 (213)
..-+|++|.+ .+-||++..++.||.||--|++..=.|-+.|+ .|+ .-.++-+++.+
T Consensus 1095 -------------iFvFLLSTRA----GGLGINLTAADTViFYdSDWNPT~D~QAMDRAHRLGQTrdvtvyrl~~rg 1154 (1185)
T KOG0388|consen 1095 -------------IFVFLLSTRA----GGLGINLTAADTVIFYDSDWNPTADQQAMDRAHRLGQTRDVTVYRLITRG 1154 (1185)
T ss_pred -------------eEEEEEeccc----CcccccccccceEEEecCCCCcchhhHHHHHHHhccCccceeeeeecccc
Confidence 5668999999 99999999999999999999987777766664 333 35677777765
No 120
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=98.20 E-value=3.9e-06 Score=82.80 Aligned_cols=125 Identities=12% Similarity=0.165 Sum_probs=102.4
Q ss_pred hHHHHHHHHHHHhhcCCCCCCcEEEEeCchHHHHHHHHHHhcc----C--CceEEEecCCCCHHHHHHHHHHHhcccccc
Q 028124 34 FKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNL----A--DISFSSLHSDLAETERTLILEEFRHTAMKW 107 (213)
Q Consensus 34 ~K~~~L~~ll~~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~----~--~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~~ 107 (213)
-...++.+++..+.. ....+.+|||-+....+..+.+.|... + .+.+..+|+.|+..+++.+..+--.|.
T Consensus 395 id~~Li~~li~~I~~-~~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~~~~~~ilplHs~~~s~eQ~~VF~~pp~g~--- 470 (924)
T KOG0920|consen 395 IDYDLIEDLIEYIDE-REFEGAILVFLPGWEEILQLKELLEVNLPFADSLKFAILPLHSSIPSEEQQAVFKRPPKGT--- 470 (924)
T ss_pred ccHHHHHHHHHhccc-CCCCceEEEEcCCHHHHHHHHHHhhhccccccccceEEEeccccCChHHHHHhcCCCCCCc---
Confidence 467788888877655 355789999999999999999999642 1 266889999999999998888887774
Q ss_pred cccccccCCCCCcCCCCCCceeEEEEeCCCCCcCcCCCCCCCCCEEEE--------ecCCCCh----------HHHHHhh
Q 028124 108 NQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLIN--------YELPTKK----------ETYIRRM 169 (213)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~rGld~~~v~~VI~--------yd~P~~~----------~~yi~R~ 169 (213)
.+|+++|.+ ++-.+.++||-+||. ||+-.+. +.-.||.
T Consensus 471 --------------------RKIIlaTNI----AETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~ 526 (924)
T KOG0920|consen 471 --------------------RKIILATNI----AETSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRR 526 (924)
T ss_pred --------------------chhhhhhhh----HhhcccccCeEEEEecCeeeeeeecccCCcchhheeeccccchHHhc
Confidence 889999999 999999999999996 5655433 4448999
Q ss_pred ccccC-CCCeEEEEEeCc
Q 028124 170 TTCLA-ADGSVINIVVGG 186 (213)
Q Consensus 170 GR~~~-~~g~~i~~~~~~ 186 (213)
||+|+ .+|.||.+++..
T Consensus 527 GRAGRv~~G~cy~L~~~~ 544 (924)
T KOG0920|consen 527 GRAGRVRPGICYHLYTRS 544 (924)
T ss_pred ccccCccCCeeEEeechh
Confidence 99875 469999999864
No 121
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=98.15 E-value=9.2e-06 Score=77.32 Aligned_cols=147 Identities=14% Similarity=0.227 Sum_probs=114.5
Q ss_pred CCCCCCCCCCCCceEEEEEecCcchHHHHHHHHHHHhhcCCCCCCcEEEEeCchHHHHHHHHHHhcc--------CCceE
Q 028124 10 CPPCQSPSHFSQPRHFYVAVDRLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNL--------ADISF 81 (213)
Q Consensus 10 ~~~~~~~~~~~~i~~~~~~~~~~~~K~~~L~~ll~~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~--------~~~~~ 81 (213)
+++..-|..+-.+.-+|-..+..+.--+++..+++-.+ ..+.+-+|||-.-.+..+...+.|..+ .++.+
T Consensus 432 apIF~iPGRRyPVdi~Yt~~PEAdYldAai~tVlqIH~--tqp~GDILVFltGQeEIEt~~e~l~~~~~~LGski~eliv 509 (902)
T KOG0923|consen 432 APIFRIPGRRYPVDIFYTKAPEADYLDAAIVTVLQIHL--TQPLGDILVFLTGQEEIETVKENLKERCRRLGSKIRELIV 509 (902)
T ss_pred CcEEeccCcccceeeecccCCchhHHHHHHhhheeeEe--ccCCccEEEEeccHHHHHHHHHHHHHHHHHhccccceEEE
Confidence 45566677778889999988888755555555554322 256789999999888877766666432 24678
Q ss_pred EEecCCCCHHHHHHHHHHHhcccccccccccccCCCCCcCCCCCCceeEEEEeCCCCCcCcCCCCCCCCCEEEEecC---
Q 028124 82 SSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYEL--- 158 (213)
Q Consensus 82 ~~lhg~~~~~~R~~~l~~Fr~g~~~~~~~~~~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~rGld~~~v~~VI~yd~--- 158 (213)
..+|+.+|.+.+.++++.--.|. .++++||++ ++-.+.++++.+||.-.+
T Consensus 510 ~PiYaNLPselQakIFePtP~ga-----------------------RKVVLATNI----AETSlTIdgI~yViDpGf~K~ 562 (902)
T KOG0923|consen 510 LPIYANLPSELQAKIFEPTPPGA-----------------------RKVVLATNI----AETSLTIDGIKYVIDPGFVKQ 562 (902)
T ss_pred eeccccCChHHHHhhcCCCCCCc-----------------------eeEEEeecc----hhhceeecCeEEEecCccccc
Confidence 89999999999999988877774 889999999 999999999999996332
Q ss_pred ---------------CCChHHHHHhhccccCC-CCeEEEEEeC
Q 028124 159 ---------------PTKKETYIRRMTTCLAA-DGSVINIVVG 185 (213)
Q Consensus 159 ---------------P~~~~~yi~R~GR~~~~-~g~~i~~~~~ 185 (213)
|-|.++-.||+||+|+. +|.|+-+++.
T Consensus 563 nsynprtGmesL~v~piSKAsA~QRaGRAGRtgPGKCfRLYt~ 605 (902)
T KOG0923|consen 563 NSYNPRTGMESLLVTPISKASANQRAGRAGRTGPGKCFRLYTA 605 (902)
T ss_pred cCcCCCcCceeEEEeeechhhhhhhccccCCCCCCceEEeech
Confidence 22567779999999765 5999999985
No 122
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=98.12 E-value=7.3e-06 Score=78.87 Aligned_cols=109 Identities=22% Similarity=0.241 Sum_probs=81.5
Q ss_pred CCCCcEEEEeCchHHHHHHHHHHhccCC--------------------------------------ceEEEecCCCCHHH
Q 028124 51 RPGLPMIVCCSSRDELDAVCSAVSNLAD--------------------------------------ISFSSLHSDLAETE 92 (213)
Q Consensus 51 ~~~~~~IIF~~~~~~~~~l~~~L~~~~~--------------------------------------~~~~~lhg~~~~~~ 92 (213)
++..++|||+=+++.|+.+|..+.+... --+...|+|+-+--
T Consensus 381 ~~~~PVIvFSFSkkeCE~~Alqm~kldfN~deEk~~V~~iF~nAi~~LseeDr~LPqie~iLPLL~RGIGIHHsGLLPIl 460 (1041)
T KOG0948|consen 381 RNYLPVIVFSFSKKECEAYALQMSKLDFNTDEEKELVETIFNNAIDQLSEEDRELPQIENILPLLRRGIGIHHSGLLPIL 460 (1041)
T ss_pred hcCCceEEEEecHhHHHHHHHhhccCcCCChhHHHHHHHHHHHHHHhcChhhccchHHHHHHHHHHhccccccccchHHH
Confidence 4568999999999999999988876510 01455677776666
Q ss_pred HHHHHHHHhcccccccccccccCCCCCcCCCCCCceeEEEEeCCCCCcCcCCCCCCCCCEEEE----ec---CCC-ChHH
Q 028124 93 RTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLIN----YE---LPT-KKET 164 (213)
Q Consensus 93 R~~~l~~Fr~g~~~~~~~~~~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~rGld~~~v~~VI~----yd---~P~-~~~~ 164 (213)
+..+---|..| -+++|.||+. ++.|++.|.-++|.- || +-| +.-.
T Consensus 461 KE~IEILFqEG-----------------------LvKvLFATET----FsiGLNMPAkTVvFT~~rKfDG~~fRwissGE 513 (1041)
T KOG0948|consen 461 KEVIEILFQEG-----------------------LVKVLFATET----FSIGLNMPAKTVVFTAVRKFDGKKFRWISSGE 513 (1041)
T ss_pred HHHHHHHHhcc-----------------------HHHHHHhhhh----hhhccCCcceeEEEeeccccCCcceeeecccc
Confidence 55566668887 4999999999 999999997666653 22 222 5678
Q ss_pred HHHhhccccCC----CCeEEEEEeCc
Q 028124 165 YIRRMTTCLAA----DGSVINIVVGG 186 (213)
Q Consensus 165 yi~R~GR~~~~----~g~~i~~~~~~ 186 (213)
|||..||+|++ .|.||.++...
T Consensus 514 YIQMSGRAGRRG~DdrGivIlmiDek 539 (1041)
T KOG0948|consen 514 YIQMSGRAGRRGIDDRGIVILMIDEK 539 (1041)
T ss_pred eEEecccccccCCCCCceEEEEecCc
Confidence 99999987655 49999999753
No 123
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=98.11 E-value=5.7e-05 Score=74.31 Aligned_cols=128 Identities=10% Similarity=0.145 Sum_probs=96.5
Q ss_pred EEecCcchHHHHHHHHHHHhhcCCCCCCcEEEEeCchHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhccccc
Q 028124 27 VAVDRLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMK 106 (213)
Q Consensus 27 ~~~~~~~~K~~~L~~ll~~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~ 106 (213)
++.... .|+..+.+-+...- ..++|+||.|.+....+.|+..|.+.| +....|+..-...| ..++. +.|.
T Consensus 404 iy~t~~-~K~~Aii~ei~~~~---~~gqPVLVgT~SIe~SE~ls~~L~~~g-i~h~vLNAk~~e~E-A~IIa--~AG~-- 473 (925)
T PRK12903 404 IFGTKH-AKWKAVVKEVKRVH---KKGQPILIGTAQVEDSETLHELLLEAN-IPHTVLNAKQNARE-AEIIA--KAGQ-- 473 (925)
T ss_pred EEEcHH-HHHHHHHHHHHHHH---hcCCCEEEEeCcHHHHHHHHHHHHHCC-CCceeecccchhhH-HHHHH--hCCC--
Confidence 333444 48888888776532 468999999999999999999999987 88888887533222 33443 3442
Q ss_pred ccccccccCCCCCcCCCCCCceeEEEEeCCCCCcCcCCCCCCCCC--------EEEEecCCCChHHHHHhhcccc--CCC
Q 028124 107 WNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISAR--------VLINYELPTKKETYIRRMTTCL--AAD 176 (213)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~rGld~~~v~--------~VI~yd~P~~~~~yi~R~GR~~--~~~ 176 (213)
+-.|.|||++ ++||.|+.--. +||.-..|.|..-=-|-.||+| |.+
T Consensus 474 --------------------~GaVTIATNM----AGRGTDI~Lg~~V~~~GGLhVIgTerheSrRIDnQLrGRaGRQGDp 529 (925)
T PRK12903 474 --------------------KGAITIATNM----AGRGTDIKLSKEVLELGGLYVLGTDKAESRRIDNQLRGRSGRQGDV 529 (925)
T ss_pred --------------------CCeEEEeccc----ccCCcCccCchhHHHcCCcEEEecccCchHHHHHHHhcccccCCCC
Confidence 5779999999 99999997443 8999999988776678889974 667
Q ss_pred CeEEEEEeCchh
Q 028124 177 GSVINIVVGGEV 188 (213)
Q Consensus 177 g~~i~~~~~~e~ 188 (213)
|.+-.|++-+|.
T Consensus 530 Gss~f~lSLeD~ 541 (925)
T PRK12903 530 GESRFFISLDDQ 541 (925)
T ss_pred CcceEEEecchH
Confidence 888888876543
No 124
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=98.03 E-value=2.4e-05 Score=77.76 Aligned_cols=91 Identities=16% Similarity=0.235 Sum_probs=66.0
Q ss_pred HHHHHHHHHhhcCCCCCCcEEEEeCchHHHHHHHHHHhcc---CCceEEEecCCCCHHHHHHHHHHHhcccccccccccc
Q 028124 37 ETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNL---ADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTE 113 (213)
Q Consensus 37 ~~L~~ll~~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~---~~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~~~~~~~~ 113 (213)
+.+.+.|..+.. ...++++||+++.+.++.++..|... .++.+ +..+.. ..|.+++++|+.++
T Consensus 660 ~~ia~~i~~l~~--~~~g~~LVlftS~~~l~~v~~~L~~~~~~~~~~~--l~q~~~-~~r~~ll~~F~~~~--------- 725 (850)
T TIGR01407 660 QEIASYIIEITA--ITSPKILVLFTSYEMLHMVYDMLNELPEFEGYEV--LAQGIN-GSRAKIKKRFNNGE--------- 725 (850)
T ss_pred HHHHHHHHHHHH--hcCCCEEEEeCCHHHHHHHHHHHhhhccccCceE--EecCCC-ccHHHHHHHHHhCC---------
Confidence 345555544333 34579999999999999999999752 11333 223333 57899999999974
Q ss_pred cCCCCCcCCCCCCceeEEEEeCCCCCcCcCCCCCCCCC--EEEEecCC
Q 028124 114 QSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISAR--VLINYELP 159 (213)
Q Consensus 114 ~~~~~~~~~~~~~~~~iLV~Td~~~~~~~rGld~~~v~--~VI~yd~P 159 (213)
..+|++|+. +.+|+|+++.. +||...+|
T Consensus 726 --------------~~iLlgt~s----f~EGVD~~g~~l~~viI~~LP 755 (850)
T TIGR01407 726 --------------KAILLGTSS----FWEGVDFPGNGLVCLVIPRLP 755 (850)
T ss_pred --------------CeEEEEcce----eecccccCCCceEEEEEeCCC
Confidence 789999999 99999999877 45655555
No 125
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=97.97 E-value=5.5e-05 Score=75.06 Aligned_cols=113 Identities=17% Similarity=0.242 Sum_probs=84.3
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhcc----CC------------------ceEEEecCCCCHHHHHHHHHHHhcccccccc
Q 028124 52 PGLPMIVCCSSRDELDAVCSAVSNL----AD------------------ISFSSLHSDLAETERTLILEEFRHTAMKWNQ 109 (213)
Q Consensus 52 ~~~~~IIF~~~~~~~~~l~~~L~~~----~~------------------~~~~~lhg~~~~~~R~~~l~~Fr~g~~~~~~ 109 (213)
.+.+++|||.++..+-..|+.|... |. .-....|.+|...+|.-.-..|..|.
T Consensus 348 ~g~qVlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~f~~~~~~k~l~elf~~g~~iHhAGm~r~DR~l~E~~F~~G~----- 422 (1230)
T KOG0952|consen 348 EGHQVLVFVHSRNETIRTAKKLRERAETNGEKDLFLPSPRNKQLKELFQQGMGIHHAGMLRSDRQLVEKEFKEGH----- 422 (1230)
T ss_pred cCCeEEEEEecChHHHHHHHHHHHHHHhcCcccccCCChhhHHHHHHHHhhhhhcccccchhhHHHHHHHHhcCC-----
Confidence 4899999999999999998888654 10 12456788999999999999999985
Q ss_pred cccccCCCCCcCCCCCCceeEEEEeCCCCCcCcCCCCCCCCCEEEE----ecCCC------ChHHHHHhhcccc----CC
Q 028124 110 KVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLIN----YELPT------KKETYIRRMTTCL----AA 175 (213)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~rGld~~~v~~VI~----yd~P~------~~~~yi~R~GR~~----~~ 175 (213)
+++|+||.. ++-|+++|+=-++|- ||.-. ..-+-+|-.||+| .+
T Consensus 423 ------------------i~vL~cTaT----LAwGVNLPA~aViIKGT~~ydsskg~f~dlgilDVlQifGRAGRPqFd~ 480 (1230)
T KOG0952|consen 423 ------------------IKVLCCTAT----LAWGVNLPAYAVIIKGTQVYDSSKGSFVDLGILDVLQIFGRAGRPQFDS 480 (1230)
T ss_pred ------------------ceEEEecce----eeeccCCcceEEEecCCcccccccCceeeehHHHHHHHHhccCCCCCCC
Confidence 999999999 999999996544442 44333 2456677777764 45
Q ss_pred CCeEEEEEeCchhHHH
Q 028124 176 DGSVINIVVGGEVVTL 191 (213)
Q Consensus 176 ~g~~i~~~~~~e~~~~ 191 (213)
.|.+|.+-+.+-...+
T Consensus 481 ~G~giIiTt~dkl~~Y 496 (1230)
T KOG0952|consen 481 SGEGIIITTRDKLDHY 496 (1230)
T ss_pred CceEEEEecccHHHHH
Confidence 5888877765444433
No 126
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=97.95 E-value=0.00011 Score=68.45 Aligned_cols=131 Identities=16% Similarity=0.175 Sum_probs=97.4
Q ss_pred eEEEEEecCcchHHHHHHHHHHHhhcCCCCCCcEEEEeCchHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhc
Q 028124 23 RHFYVAVDRLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRH 102 (213)
Q Consensus 23 ~~~~~~~~~~~~K~~~L~~ll~~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~lhg~~~~~~R~~~l~~Fr~ 102 (213)
+...+++-+.. |++.-.-|++.. +..+.++|||..+.-.....|-.|.+ -.++|..++.||.++|+.|+.
T Consensus 517 kr~lLyvMNP~-KFraCqfLI~~H---E~RgDKiIVFsDnvfALk~YAikl~K------pfIYG~Tsq~ERm~ILqnFq~ 586 (776)
T KOG1123|consen 517 KRMLLYVMNPN-KFRACQFLIKFH---ERRGDKIIVFSDNVFALKEYAIKLGK------PFIYGPTSQNERMKILQNFQT 586 (776)
T ss_pred hhheeeecCcc-hhHHHHHHHHHH---HhcCCeEEEEeccHHHHHHHHHHcCC------ceEECCCchhHHHHHHHhccc
Confidence 34556677777 998876677543 24789999998877666665555522 357899999999999999998
Q ss_pred ccccccccccccCCCCCcCCCCCCceeEEEEeCCCCCcCcCCCCCCCCCEEEEecCCC-ChHHHHHhhccc--c--CC--
Q 028124 103 TAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPT-KKETYIRRMTTC--L--AA-- 175 (213)
Q Consensus 103 g~~~~~~~~~~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~rGld~~~v~~VI~yd~P~-~~~~yi~R~GR~--~--~~-- 175 (213)
.. +++-+..+.+ ..-.+|+|+++++|...-.. |...=-||.||. + ++
T Consensus 587 n~----------------------~vNTIFlSKV----gDtSiDLPEAnvLIQISSH~GSRRQEAQRLGRILRAKk~~de 640 (776)
T KOG1123|consen 587 NP----------------------KVNTIFLSKV----GDTSIDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKRNDE 640 (776)
T ss_pred CC----------------------ccceEEEeec----cCccccCCcccEEEEEcccccchHHHHHHHHHHHHHhhcCcc
Confidence 74 6888888888 89999999999999987664 455667999994 1 11
Q ss_pred --CCeEEEEEeCchhH
Q 028124 176 --DGSVINIVVGGEVV 189 (213)
Q Consensus 176 --~g~~i~~~~~~e~~ 189 (213)
....+++|..+..+
T Consensus 641 ~fnafFYSLVS~DTqE 656 (776)
T KOG1123|consen 641 EFNAFFYSLVSKDTQE 656 (776)
T ss_pred ccceeeeeeeecchHH
Confidence 24777888766433
No 127
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=97.88 E-value=6.9e-05 Score=72.97 Aligned_cols=93 Identities=13% Similarity=0.154 Sum_probs=76.1
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhcc-CC---ceEEEecCCCCHHHHHHHHHHHhcccccccccccccCCCCCcCCCCCCc
Q 028124 52 PGLPMIVCCSSRDELDAVCSAVSNL-AD---ISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHK 127 (213)
Q Consensus 52 ~~~~~IIF~~~~~~~~~l~~~L~~~-~~---~~~~~lhg~~~~~~R~~~l~~Fr~g~~~~~~~~~~~~~~~~~~~~~~~~ 127 (213)
..+|+||||.+.++|+++...|.+. ++ --+..+.|+- ++-.+.+..|...+ .-
T Consensus 425 ~~~KTIvFa~n~dHAe~i~~~~~~~ype~~~~~a~~IT~d~--~~~q~~Id~f~~ke---------------------~~ 481 (875)
T COG4096 425 EIGKTIVFAKNHDHAERIREALVNEYPEYNGRYAMKITGDA--EQAQALIDNFIDKE---------------------KY 481 (875)
T ss_pred ccCceEEEeeCcHHHHHHHHHHHHhCccccCceEEEEeccc--hhhHHHHHHHHhcC---------------------CC
Confidence 3689999999999999999999764 21 3467777764 33455666776643 24
Q ss_pred eeEEEEeCCCCCcCcCCCCCCCCCEEEEecCCCChHHHHHhhcc
Q 028124 128 SHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTT 171 (213)
Q Consensus 128 ~~iLV~Td~~~~~~~rGld~~~v~~VI~yd~P~~~~~yi~R~GR 171 (213)
.+|.|+.|+ +.-|+|+|.|.++|.+..=+|...|.|.+||
T Consensus 482 P~Iaitvdl----L~TGiDvpev~nlVF~r~VrSktkF~QMvGR 521 (875)
T COG4096 482 PRIAITVDL----LTTGVDVPEVVNLVFDRKVRSKTKFKQMVGR 521 (875)
T ss_pred CceEEehhh----hhcCCCchheeeeeehhhhhhHHHHHHHhcC
Confidence 779999999 9999999999999999999999999999999
No 128
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=97.86 E-value=3.7e-05 Score=73.58 Aligned_cols=142 Identities=11% Similarity=0.205 Sum_probs=103.7
Q ss_pred CCCCCCCceEEEEEecCcchHHHHHHHHHHHhhcCCCCCCcEEEEeCchHHHHH----HHHHHhcc---C--CceEEEec
Q 028124 15 SPSHFSQPRHFYVAVDRLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDA----VCSAVSNL---A--DISFSSLH 85 (213)
Q Consensus 15 ~~~~~~~i~~~~~~~~~~~~K~~~L~~ll~~~~~~~~~~~~~IIF~~~~~~~~~----l~~~L~~~---~--~~~~~~lh 85 (213)
-|...-.+.-.|...+-++.--.++.+.+.-... ...+-.+||..-.+..+- |.+.|... + ++.+..++
T Consensus 527 IpGRTyPV~~~~~k~p~eDYVeaavkq~v~Ihl~--~~~GdilIfmtGqediE~t~~~i~~~l~ql~~~~~~~L~vlpiY 604 (1042)
T KOG0924|consen 527 IPGRTYPVEIMYTKTPVEDYVEAAVKQAVQIHLS--GPPGDILIFMTGQEDIECTCDIIKEKLEQLDSAPTTDLAVLPIY 604 (1042)
T ss_pred ecCCccceEEEeccCchHHHHHHHHhhheEeecc--CCCCCEEEecCCCcchhHHHHHHHHHHHhhhcCCCCceEEEeeh
Confidence 3444445777777777666555555555543222 345789999987665554 44444332 2 47899999
Q ss_pred CCCCHHHHHHHHHHHhcccccccccccccCCCCCcCCCCCCceeEEEEeCCCCCcCcCCCCCCCCCEEEEec--------
Q 028124 86 SDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYE-------- 157 (213)
Q Consensus 86 g~~~~~~R~~~l~~Fr~g~~~~~~~~~~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~rGld~~~v~~VI~yd-------- 157 (213)
+.||..-+.++++.--.|. .+++|+|++ ++-.+.++++.+||...
T Consensus 605 SQLp~dlQ~kiFq~a~~~v-----------------------RK~IvATNI----AETSLTi~gI~yVID~Gy~K~kvyn 657 (1042)
T KOG0924|consen 605 SQLPADLQAKIFQKAEGGV-----------------------RKCIVATNI----AETSLTIPGIRYVIDTGYCKLKVYN 657 (1042)
T ss_pred hhCchhhhhhhcccCCCCc-----------------------eeEEEeccc----hhhceeecceEEEEecCceeeeecc
Confidence 9999999988877766663 889999999 99999999999999753
Q ss_pred ----------CCCChHHHHHhhccccCC-CCeEEEEEeC
Q 028124 158 ----------LPTKKETYIRRMTTCLAA-DGSVINIVVG 185 (213)
Q Consensus 158 ----------~P~~~~~yi~R~GR~~~~-~g~~i~~~~~ 185 (213)
.|-|-+.--||.||+|+. +|.|+-+++.
T Consensus 658 ~~~G~D~L~~~pIS~AnA~QRaGRAGRt~pG~cYRlYTe 696 (1042)
T KOG0924|consen 658 PRIGMDALQIVPISQANADQRAGRAGRTGPGTCYRLYTE 696 (1042)
T ss_pred cccccceeEEEechhccchhhccccCCCCCcceeeehhh
Confidence 344566778999999765 6999999986
No 129
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=97.83 E-value=0.00011 Score=72.61 Aligned_cols=45 Identities=13% Similarity=0.142 Sum_probs=36.2
Q ss_pred CcchHHHHHHHHHHHhhcC------CCCCCcEEEEeCchHHHHHHHHHHhc
Q 028124 31 RLQFKMETLVELLHLVVAG------RRPGLPMIVCCSSRDELDAVCSAVSN 75 (213)
Q Consensus 31 ~~~~K~~~L~~ll~~~~~~------~~~~~~~IIF~~~~~~~~~l~~~L~~ 75 (213)
++..|++.|.++|+++... ..+..++||||+..++|..|.+.|..
T Consensus 267 Ee~PKw~~L~eiL~eI~~~~~~~~~~~~~~~iLI~~~d~~T~~qL~~~L~~ 317 (814)
T TIGR00596 267 EENPKWEVLTDVLKEISHEMRMTNRLQGPGKVLIMCSDNRTCLQLRDYLTT 317 (814)
T ss_pred ccCCCHHHHHHHHHHHHhHHhhhcccCCCCcEEEEEcchHHHHHHHHHHHh
Confidence 3567999999999875542 13457899999999999999999965
No 130
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=97.82 E-value=0.0011 Score=61.32 Aligned_cols=151 Identities=13% Similarity=0.134 Sum_probs=114.2
Q ss_pred CCCCceEEEEEecC------cchHHHHHHH-HHHHhhcCCCCCCcEEEEeCchHHHHHHHHHHhccCCceEEEecCCCCH
Q 028124 18 HFSQPRHFYVAVDR------LQFKMETLVE-LLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAE 90 (213)
Q Consensus 18 ~~~~i~~~~~~~~~------~~~K~~~L~~-ll~~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~lhg~~~~ 90 (213)
...+|+|.+..++. .+.+++.+.+ +|..+.. ......++||+++--.=-.|-+.|++.. +....+|--.+.
T Consensus 259 v~~~v~Q~F~r~~~~s~~~~~d~Rf~yF~~~iLP~l~~-~~~~~~~LIfIPSYfDfVRlRN~lk~~~-~sF~~i~EYts~ 336 (442)
T PF06862_consen 259 VVVQVRQVFQRFDCSSPADDPDARFKYFTKKILPQLKR-DSKMSGTLIFIPSYFDFVRLRNYLKKEN-ISFVQISEYTSN 336 (442)
T ss_pred cccCCceEEEEecCCCcchhhhHHHHHHHHHHHHHhhh-ccCCCcEEEEecchhhhHHHHHHHHhcC-CeEEEecccCCH
Confidence 44578899987553 2456666666 5555442 2466899999999999999999999765 899999999999
Q ss_pred HHHHHHHHHHhcccccccccccccCCCCCcCCCCCCceeEEEEeCCCCCcCcCCCCCCCCCEEEEecCCCChHHHHHhhc
Q 028124 91 TERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMT 170 (213)
Q Consensus 91 ~~R~~~l~~Fr~g~~~~~~~~~~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~rGld~~~v~~VI~yd~P~~~~~yi~R~G 170 (213)
.+-.++-..|.+|. .++|+.|+-. -.=|=..+.++..||.|.+|..+.-|..-+.
T Consensus 337 ~~isRAR~~F~~G~-----------------------~~iLL~TER~--HFfrRy~irGi~~viFY~~P~~p~fY~El~n 391 (442)
T PF06862_consen 337 SDISRARSQFFHGR-----------------------KPILLYTERF--HFFRRYRIRGIRHVIFYGPPENPQFYSELLN 391 (442)
T ss_pred HHHHHHHHHHHcCC-----------------------ceEEEEEhHH--hhhhhceecCCcEEEEECCCCChhHHHHHHh
Confidence 99999999999985 9999999951 1123345678999999999999988877664
Q ss_pred cccC--------CCCeEEEEEeCchhHHHHHHH
Q 028124 171 TCLA--------ADGSVINIVVGGEVVTLRSME 195 (213)
Q Consensus 171 R~~~--------~~g~~i~~~~~~e~~~~~~le 195 (213)
--.. ....|..+++..|...+..|.
T Consensus 392 ~~~~~~~~~~~~~~~~~~~lysk~D~~~LErIV 424 (442)
T PF06862_consen 392 MLDESSGGEVDAADATVTVLYSKYDALRLERIV 424 (442)
T ss_pred hhcccccccccccCceEEEEecHhHHHHHHHHh
Confidence 3221 246888888888876555553
No 131
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=97.81 E-value=0.00031 Score=68.19 Aligned_cols=106 Identities=14% Similarity=0.082 Sum_probs=78.4
Q ss_pred CCcEEEEeCchHHHHHHHHHHhcc-C---CceEEEecCCCCHH---------------------HHHHHHHHHhcccccc
Q 028124 53 GLPMIVCCSSRDELDAVCSAVSNL-A---DISFSSLHSDLAET---------------------ERTLILEEFRHTAMKW 107 (213)
Q Consensus 53 ~~~~IIF~~~~~~~~~l~~~L~~~-~---~~~~~~lhg~~~~~---------------------~R~~~l~~Fr~g~~~~ 107 (213)
+.+++|||.++..|..+.+.|... + ....+.+++..+.+ ...+++++|+..
T Consensus 514 ~~kamvv~~sr~~a~~~~~~l~~~~~~~~~~~~vv~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fk~~---- 589 (667)
T TIGR00348 514 KFKAMVVAISRYACVEEKNALDEELNEKFEASAIVMTGKESDDAEIRDYNKHIRTKFDKSDGFEIYYKDLERFKKE---- 589 (667)
T ss_pred cCceeEEEecHHHHHHHHHHHHhhcccccCCeeEEecCCccchhHHHHHHHHhccccccchhhhHHHHHHHHhcCC----
Confidence 589999999999999999988654 1 13556677654433 123566677653
Q ss_pred cccccccCCCCCcCCCCCCceeEEEEeCCCCCcCcCCCCCCCCCEEEEecCCCChHHHHHhhccccC-----C-CCeEEE
Q 028124 108 NQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLA-----A-DGSVIN 181 (213)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~rGld~~~v~~VI~yd~P~~~~~yi~R~GR~~~-----~-~g~~i~ 181 (213)
+..++||++|. +..|+|.|.+++++..-+-.+ ..++|.+||+.+ + .|.++.
T Consensus 590 ------------------~~~~ilIVvdm----llTGFDaP~l~tLyldKplk~-h~LlQai~R~nR~~~~~K~~g~IvD 646 (667)
T TIGR00348 590 ------------------ENPKLLIVVDM----LLTGFDAPILNTLYLDKPLKY-HGLLQAIARTNRIDGKDKTFGLIVD 646 (667)
T ss_pred ------------------CCceEEEEEcc----cccccCCCccceEEEeccccc-cHHHHHHHHhccccCCCCCCEEEEE
Confidence 25899999999 999999999999998776665 468999999633 2 267777
Q ss_pred EEeC
Q 028124 182 IVVG 185 (213)
Q Consensus 182 ~~~~ 185 (213)
|+..
T Consensus 647 y~g~ 650 (667)
T TIGR00348 647 YRGL 650 (667)
T ss_pred CcCh
Confidence 7653
No 132
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=97.77 E-value=0.0005 Score=66.80 Aligned_cols=123 Identities=15% Similarity=0.103 Sum_probs=94.5
Q ss_pred chHHHHHHHHHHHhhcCCCCCCcEEEEeCchHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhccccccccccc
Q 028124 33 QFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVT 112 (213)
Q Consensus 33 ~~K~~~L~~ll~~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~~~~~~~ 112 (213)
..|++.+.+-+...- ..++|+||.|.+....+.|+..|.+.+ +....|+..-...| ..++.+- |
T Consensus 410 ~~k~~Aii~ei~~~~---~~GrPVLVgt~sI~~SE~ls~~L~~~g-I~h~vLNAk~~~~E-A~IIa~A--G--------- 473 (764)
T PRK12326 410 AEKNDAIVEHIAEVH---ETGQPVLVGTHDVAESEELAERLRAAG-VPAVVLNAKNDAEE-ARIIAEA--G--------- 473 (764)
T ss_pred HHHHHHHHHHHHHHH---HcCCCEEEEeCCHHHHHHHHHHHHhCC-CcceeeccCchHhH-HHHHHhc--C---------
Confidence 448888888776532 478999999999999999999999987 88888887633333 4444432 2
Q ss_pred ccCCCCCcCCCCCCceeEEEEeCCCCCcCcCCCCCCCC---------------CEEEEecCCCChHHHHHhhcccc--CC
Q 028124 113 EQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISA---------------RVLINYELPTKKETYIRRMTTCL--AA 175 (213)
Q Consensus 113 ~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~rGld~~~v---------------~~VI~yd~P~~~~~yi~R~GR~~--~~ 175 (213)
.+-.|-|||.+ ++||.|+.=- =+||--..|.|..-=-|=.||+| |.
T Consensus 474 -------------~~gaVTIATNM----AGRGTDIkLg~~~~~~~~~V~~~GGLhVIgTerheSrRID~QLrGRaGRQGD 536 (764)
T PRK12326 474 -------------KYGAVTVSTQM----AGRGTDIRLGGSDEADRDRVAELGGLHVIGTGRHRSERLDNQLRGRAGRQGD 536 (764)
T ss_pred -------------CCCcEEEEecC----CCCccCeecCCCcccchHHHHHcCCcEEEeccCCchHHHHHHHhcccccCCC
Confidence 14679999999 9999998632 27888888988877778779975 66
Q ss_pred CCeEEEEEeCchh
Q 028124 176 DGSVINIVVGGEV 188 (213)
Q Consensus 176 ~g~~i~~~~~~e~ 188 (213)
+|.+-.|++-+|.
T Consensus 537 pGss~f~lSleDd 549 (764)
T PRK12326 537 PGSSVFFVSLEDD 549 (764)
T ss_pred CCceeEEEEcchh
Confidence 7988888876543
No 133
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=97.74 E-value=0.00018 Score=71.46 Aligned_cols=105 Identities=18% Similarity=0.316 Sum_probs=84.7
Q ss_pred CCCCCceEEEEEecCcchHHHHHHHHHHHhhcCCCCCCcEEEEeCc---hHHHHHHHHHHhccCCceEEEecCCCCHHHH
Q 028124 17 SHFSQPRHFYVAVDRLQFKMETLVELLHLVVAGRRPGLPMIVCCSS---RDELDAVCSAVSNLADISFSSLHSDLAETER 93 (213)
Q Consensus 17 ~~~~~i~~~~~~~~~~~~K~~~L~~ll~~~~~~~~~~~~~IIF~~~---~~~~~~l~~~L~~~~~~~~~~lhg~~~~~~R 93 (213)
....||...|+.. . -.+.+.++++.+ +.-.|||++. ++.+++|++.|++.| +++..+|+. .
T Consensus 309 ~~LRNIvD~y~~~---~-~~e~~~elvk~l------G~GgLIfV~~d~G~e~aeel~e~Lr~~G-i~a~~~~a~-----~ 372 (1187)
T COG1110 309 EGLRNIVDIYVES---E-SLEKVVELVKKL------GDGGLIFVPIDYGREKAEELAEYLRSHG-INAELIHAE-----K 372 (1187)
T ss_pred hhhhheeeeeccC---c-cHHHHHHHHHHh------CCCeEEEEEcHHhHHHHHHHHHHHHhcC-ceEEEeecc-----c
Confidence 3446777777665 2 556667777762 3568999999 999999999999998 899999983 3
Q ss_pred HHHHHHHhcccccccccccccCCCCCcCCCCCCceeEEEEeCCCCCcCcCCCCCCC-CCEEEEecCCC
Q 028124 94 TLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAIS-ARVLINYELPT 160 (213)
Q Consensus 94 ~~~l~~Fr~g~~~~~~~~~~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~rGld~~~-v~~VI~yd~P~ 160 (213)
.+.++.|..|+ +++||....-+--+.||+|+|+ ++++|.|+.|+
T Consensus 373 ~~~le~F~~Ge-----------------------idvLVGvAsyYG~lVRGlDLP~rirYaIF~GvPk 417 (1187)
T COG1110 373 EEALEDFEEGE-----------------------VDVLVGVASYYGVLVRGLDLPHRIRYAVFYGVPK 417 (1187)
T ss_pred hhhhhhhccCc-----------------------eeEEEEecccccceeecCCchhheeEEEEecCCc
Confidence 77899999996 9999987655555899999995 67999999994
No 134
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=97.62 E-value=0.00047 Score=68.38 Aligned_cols=123 Identities=15% Similarity=0.151 Sum_probs=101.1
Q ss_pred HHHHHHHHHHHhhcCCCCCCcEEEEeCchHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhccccccccccccc
Q 028124 35 KMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQ 114 (213)
Q Consensus 35 K~~~L~~ll~~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~~~~~~~~~ 114 (213)
|+++|-.+|-.+. ..+++++.||.-..-.+-+-.+|.-.+ ++-.-+.|....++|-..++.|.....
T Consensus 711 KfELLDRiLPKLk---atgHRVLlF~qMTrlmdimEdyL~~~~-~kYlRLDG~TK~~eRg~ll~~FN~Pds--------- 777 (1157)
T KOG0386|consen 711 KFELLDRILPKLK---ATGHRVLLFSQMTRLMDILEDYLQIRE-YKYLRLDGQTKVEERGDLLEIFNAPDS--------- 777 (1157)
T ss_pred HHHHHHhhhHHHH---hcCcchhhHHHHHHHHHHHHHHHhhhh-hheeeecCCcchhhHHHHHHHhcCCCC---------
Confidence 8999999997764 478999999998888888889998776 799999999999999999999988642
Q ss_pred CCCCCcCCCCCCceeEEEEeCCCCCcCcCCCCCCCCCEEEEecCCCChHHHHHhhccc--cCC--CCeEEEEEeC
Q 028124 115 SGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTC--LAA--DGSVINIVVG 185 (213)
Q Consensus 115 ~~~~~~~~~~~~~~~iLV~Td~~~~~~~rGld~~~v~~VI~yd~P~~~~~yi~R~GR~--~~~--~g~~i~~~~~ 185 (213)
.-..+|.+|.+ .+.|++++-++.||.||--|++....|+--|+ -|. +-.++-+++.
T Consensus 778 -----------~yf~Fllstra----gglglNlQtadtviifdsdwnp~~d~qaqdrahrigq~~evRv~rl~tv 837 (1157)
T KOG0386|consen 778 -----------PYFIFLLSTRA----GGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKKEVRVLRLITV 837 (1157)
T ss_pred -----------ceeeeeeeecc----cccccchhhcceEEEecCCCCchhHHHHHHHHHHhhchhheeeeeeehh
Confidence 23668999999 99999999999999999999988777766664 222 3455555544
No 135
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=97.60 E-value=0.0015 Score=65.09 Aligned_cols=125 Identities=13% Similarity=0.122 Sum_probs=95.1
Q ss_pred CcchHHHHHHHHHHHhhcCCCCCCcEEEEeCchHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhccccccccc
Q 028124 31 RLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQK 110 (213)
Q Consensus 31 ~~~~K~~~L~~ll~~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~~~~~ 110 (213)
....|+.++.+-+...- ..+.|++|-|.+....+.|+..|...| +....++..-...| ..++.+ .|.
T Consensus 549 t~~~k~~ai~~ei~~~~---~~grPvLigt~si~~se~ls~~L~~~g-i~h~vLNak~~~~E-a~iia~--AG~------ 615 (970)
T PRK12899 549 TEREKYHAIVAEIASIH---RKGNPILIGTESVEVSEKLSRILRQNR-IEHTVLNAKNHAQE-AEIIAG--AGK------ 615 (970)
T ss_pred CHHHHHHHHHHHHHHHH---hCCCCEEEEeCcHHHHHHHHHHHHHcC-CcceecccchhhhH-HHHHHh--cCC------
Confidence 33458888888776632 468999999999999999999999987 88888887633222 334433 232
Q ss_pred ccccCCCCCcCCCCCCceeEEEEeCCCCCcCcCCCCCCCC--------CEEEEecCCCChHHHHHhhcccc--CCCCeEE
Q 028124 111 VTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISA--------RVLINYELPTKKETYIRRMTTCL--AADGSVI 180 (213)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~rGld~~~v--------~~VI~yd~P~~~~~yi~R~GR~~--~~~g~~i 180 (213)
+-.|-|||.+ ++||.|+.-- =+||--..|.|..---|-.||+| |.+|.+.
T Consensus 616 ----------------~g~VTIATNm----AGRGTDIkl~~~v~~~GGLhVIgTer~es~Rid~Ql~GRagRQGdpGss~ 675 (970)
T PRK12899 616 ----------------LGAVTVATNM----AGRGTDIKLDEEAVAVGGLYVIGTSRHQSRRIDRQLRGRCARLGDPGAAK 675 (970)
T ss_pred ----------------CCcEEEeecc----ccCCcccccCchHHhcCCcEEEeeccCchHHHHHHHhcccccCCCCCcee
Confidence 4679999999 9999998522 17888889998888888889975 6679999
Q ss_pred EEEeCchh
Q 028124 181 NIVVGGEV 188 (213)
Q Consensus 181 ~~~~~~e~ 188 (213)
.|++-+|.
T Consensus 676 f~lSlEDd 683 (970)
T PRK12899 676 FFLSFEDR 683 (970)
T ss_pred EEEEcchH
Confidence 99987654
No 136
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=97.45 E-value=0.00044 Score=55.53 Aligned_cols=78 Identities=21% Similarity=0.265 Sum_probs=57.0
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhccC---CceEEEecCCCCHHHHHHHHHHHhcccccccccccccCCCCCcCCCCCCce
Q 028124 52 PGLPMIVCCSSRDELDAVCSAVSNLA---DISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKS 128 (213)
Q Consensus 52 ~~~~~IIF~~~~~~~~~l~~~L~~~~---~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (213)
..+.++||+++.+..+.+...++... ++. +...+ ..++..++++|+.++ -
T Consensus 8 ~~g~~lv~f~Sy~~l~~~~~~~~~~~~~~~~~-v~~q~---~~~~~~~l~~~~~~~-----------------------~ 60 (167)
T PF13307_consen 8 VPGGVLVFFPSYRRLEKVYERLKERLEEKGIP-VFVQG---SKSRDELLEEFKRGE-----------------------G 60 (167)
T ss_dssp CSSEEEEEESSHHHHHHHHTT-TSS-E-ETSC-EEEST---CCHHHHHHHHHCCSS-----------------------S
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHhhcccccce-eeecC---cchHHHHHHHHHhcc-----------------------C
Confidence 45799999999999999999998653 122 22332 467889999999974 7
Q ss_pred eEEEEeC--CCCCcCcCCCCCCC--CCEEEEecCCC
Q 028124 129 HMIVVTD--ACLPLLSSGESAIS--ARVLINYELPT 160 (213)
Q Consensus 129 ~iLV~Td--~~~~~~~rGld~~~--v~~VI~yd~P~ 160 (213)
.+|+++. . +.+|+|+++ ++.||...+|-
T Consensus 61 ~il~~v~~g~----~~EGiD~~~~~~r~vii~glPf 92 (167)
T PF13307_consen 61 AILLAVAGGS----FSEGIDFPGDLLRAVIIVGLPF 92 (167)
T ss_dssp EEEEEETTSC----CGSSS--ECESEEEEEEES---
T ss_pred eEEEEEeccc----EEEeecCCCchhheeeecCCCC
Confidence 7999997 7 899999996 77899888774
No 137
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=97.41 E-value=0.0017 Score=65.20 Aligned_cols=123 Identities=15% Similarity=0.147 Sum_probs=93.8
Q ss_pred chHHHHHHHHHHHhhcCCCCCCcEEEEeCchHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhccccccccccc
Q 028124 33 QFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVT 112 (213)
Q Consensus 33 ~~K~~~L~~ll~~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~~~~~~~ 112 (213)
..|+.++.+-+..+. ..++|+||-|.|....+.|+..|...| +..-+|+......| .+++.+- |.
T Consensus 611 ~eK~~Aii~ei~~~~---~~GrPVLVGT~SVe~SE~lS~~L~~~g-I~H~VLNAK~h~~E-AeIVA~A--G~-------- 675 (1112)
T PRK12901 611 REKYNAVIEEITELS---EAGRPVLVGTTSVEISELLSRMLKMRK-IPHNVLNAKLHQKE-AEIVAEA--GQ-------- 675 (1112)
T ss_pred HHHHHHHHHHHHHHH---HCCCCEEEEeCcHHHHHHHHHHHHHcC-CcHHHhhccchhhH-HHHHHhc--CC--------
Confidence 348988888876643 478999999999999999999999987 77777776543333 3344432 21
Q ss_pred ccCCCCCcCCCCCCceeEEEEeCCCCCcCcCCCCCC--------CCCEEEEecCCCChHHHHHhhcccc--CCCCeEEEE
Q 028124 113 EQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAI--------SARVLINYELPTKKETYIRRMTTCL--AADGSVINI 182 (213)
Q Consensus 113 ~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~rGld~~--------~v~~VI~yd~P~~~~~yi~R~GR~~--~~~g~~i~~ 182 (213)
+-.|-|||.+ ++||.|+. +==+||--..|.|..---|-.||+| |.+|.+-.|
T Consensus 676 --------------~GaVTIATNM----AGRGTDIkLg~~V~e~GGL~VIgTerheSrRID~QLrGRaGRQGDPGsS~f~ 737 (1112)
T PRK12901 676 --------------PGTVTIATNM----AGRGTDIKLSPEVKAAGGLAIIGTERHESRRVDRQLRGRAGRQGDPGSSQFY 737 (1112)
T ss_pred --------------CCcEEEeccC----cCCCcCcccchhhHHcCCCEEEEccCCCcHHHHHHHhcccccCCCCCcceEE
Confidence 4679999999 99999996 2237888888988887788889975 567988888
Q ss_pred EeCchh
Q 028124 183 VVGGEV 188 (213)
Q Consensus 183 ~~~~e~ 188 (213)
++-+|.
T Consensus 738 lSLEDd 743 (1112)
T PRK12901 738 VSLEDN 743 (1112)
T ss_pred EEcccH
Confidence 876543
No 138
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=97.35 E-value=0.0011 Score=66.74 Aligned_cols=108 Identities=20% Similarity=0.222 Sum_probs=82.1
Q ss_pred CCCCcEEEEeCchHHHHHHHHHHhccC---------------------------Cc-------------eEEEecCCCCH
Q 028124 51 RPGLPMIVCCSSRDELDAVCSAVSNLA---------------------------DI-------------SFSSLHSDLAE 90 (213)
Q Consensus 51 ~~~~~~IIF~~~~~~~~~l~~~L~~~~---------------------------~~-------------~~~~lhg~~~~ 90 (213)
.+..++|+|+=++..|+..+..+.... ++ -....|++|=+
T Consensus 377 ~~~lP~I~F~FSr~~Ce~~a~~~~~ldl~~~~~~e~~i~~ii~~~i~~L~~ed~~lp~~~~~~~~~L~RGiavHH~GlLP 456 (1041)
T COG4581 377 DNLLPAIVFSFSRRGCEEAAQILSTLDLVLTEEKERAIREIIDHAIGDLAEEDRELPLQILEISALLLRGIAVHHAGLLP 456 (1041)
T ss_pred hcCCceEEEEEchhhHHHHHHHhcccccccCCcHHHHHHHHHHHHHhhcChhhhcCcccHHHHHHHHhhhhhhhccccch
Confidence 467899999999999999888776320 01 02367788888
Q ss_pred HHHHHHHHHHhcccccccccccccCCCCCcCCCCCCceeEEEEeCCCCCcCcCCCCCCCCCEEEEecC---------CCC
Q 028124 91 TERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYEL---------PTK 161 (213)
Q Consensus 91 ~~R~~~l~~Fr~g~~~~~~~~~~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~rGld~~~v~~VI~yd~---------P~~ 161 (213)
..|..+-+.|..|- ++++++|+. ++.|++.|.-++|+ +.+ +-+
T Consensus 457 ~~K~~vE~Lfq~GL-----------------------vkvvFaTeT----~s~GiNmPartvv~-~~l~K~dG~~~r~L~ 508 (1041)
T COG4581 457 AIKELVEELFQEGL-----------------------VKVVFATET----FAIGINMPARTVVF-TSLSKFDGNGHRWLS 508 (1041)
T ss_pred HHHHHHHHHHhccc-----------------------eeEEeehhh----hhhhcCCcccceee-eeeEEecCCceeecC
Confidence 88888888999985 999999999 99999999655544 322 125
Q ss_pred hHHHHHhhccccCCC----CeEEEEEeCc
Q 028124 162 KETYIRRMTTCLAAD----GSVINIVVGG 186 (213)
Q Consensus 162 ~~~yi~R~GR~~~~~----g~~i~~~~~~ 186 (213)
+..|.|..||+|++. |.+|+...+.
T Consensus 509 ~gEy~QmsGRAGRRGlD~~G~vI~~~~~~ 537 (1041)
T COG4581 509 PGEYTQMSGRAGRRGLDVLGTVIVIEPPF 537 (1041)
T ss_pred hhHHHHhhhhhccccccccceEEEecCCC
Confidence 789999888876553 8999887654
No 139
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=97.25 E-value=0.0059 Score=61.48 Aligned_cols=94 Identities=14% Similarity=0.189 Sum_probs=66.6
Q ss_pred HHHHHHHHHhhcCCCCCCcEEEEeCchHHHHHHHHHHhccCCc--eEEEecCCCCHHHHHHHHHHHhccccccccccccc
Q 028124 37 ETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADI--SFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQ 114 (213)
Q Consensus 37 ~~L~~ll~~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~--~~~~lhg~~~~~~R~~~l~~Fr~g~~~~~~~~~~~ 114 (213)
+.+.+.|..+.. ...++++||+++.+..+.+++.|...... ...... +++...|.+++++|+.++
T Consensus 738 ~~la~~i~~l~~--~~~g~~LVLFtSy~~l~~v~~~l~~~~~~~~~~ll~Q-g~~~~~r~~l~~~F~~~~---------- 804 (928)
T PRK08074 738 EEVAAYIAKIAK--ATKGRMLVLFTSYEMLKKTYYNLKNEEELEGYVLLAQ-GVSSGSRARLTKQFQQFD---------- 804 (928)
T ss_pred HHHHHHHHHHHH--hCCCCEEEEECCHHHHHHHHHHHhhcccccCceEEec-CCCCCCHHHHHHHHHhcC----------
Confidence 455555544332 34579999999999999999999754210 112223 343356789999999874
Q ss_pred CCCCCcCCCCCCceeEEEEeCCCCCcCcCCCCCCCC--CEEEEecCCC
Q 028124 115 SGDESETGKDEHKSHMIVVTDACLPLLSSGESAISA--RVLINYELPT 160 (213)
Q Consensus 115 ~~~~~~~~~~~~~~~iLV~Td~~~~~~~rGld~~~v--~~VI~yd~P~ 160 (213)
-.+|++|.. +.+|+|+|+- ++||...+|.
T Consensus 805 -------------~~iLlG~~s----FwEGVD~pg~~l~~viI~kLPF 835 (928)
T PRK08074 805 -------------KAILLGTSS----FWEGIDIPGDELSCLVIVRLPF 835 (928)
T ss_pred -------------CeEEEecCc----ccCccccCCCceEEEEEecCCC
Confidence 679999998 9999999975 6788766554
No 140
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=97.23 E-value=0.0034 Score=62.42 Aligned_cols=123 Identities=12% Similarity=0.127 Sum_probs=90.5
Q ss_pred chHHHHHHHHHHHhhcCCCCCCcEEEEeCchHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhccccccccccc
Q 028124 33 QFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVT 112 (213)
Q Consensus 33 ~~K~~~L~~ll~~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~~~~~~~ 112 (213)
..|+.++.+-+...- ..++|+||-+.|....+.|+..|+..+ +..-.|+..-...| ..++. +.|.
T Consensus 432 ~eK~~Ai~~ei~~~~---~~GrPVLVGT~SVe~SE~ls~~L~~~g-i~h~VLNAk~~~~E-A~IIa--~AG~-------- 496 (913)
T PRK13103 432 EEKYAAIITDIKECM---ALGRPVLVGTATIETSEHMSNLLKKEG-IEHKVLNAKYHEKE-AEIIA--QAGR-------- 496 (913)
T ss_pred HHHHHHHHHHHHHHH---hCCCCEEEEeCCHHHHHHHHHHHHHcC-CcHHHhccccchhH-HHHHH--cCCC--------
Confidence 349999888887642 478999999999999999999999987 77777776533222 34444 2332
Q ss_pred ccCCCCCcCCCCCCceeEEEEeCCCCCcCcCCCCCCC--------------------------------C-----CEEEE
Q 028124 113 EQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAIS--------------------------------A-----RVLIN 155 (213)
Q Consensus 113 ~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~rGld~~~--------------------------------v-----~~VI~ 155 (213)
+-.|-|||.+ ++||.|+.= | =+||-
T Consensus 497 --------------~GaVTIATNM----AGRGTDIkLg~n~~~~~~~~~~~~~~~~~~~~~~~~~~~e~V~e~GGLhVIg 558 (913)
T PRK13103 497 --------------PGALTIATNM----AGRGTDILLGGNWEVEVAALENPTPEQIAQIKADWQKRHQQVIEAGGLHVIA 558 (913)
T ss_pred --------------CCcEEEeccC----CCCCCCEecCCchHHHHHhhhhhhHHHHHHHHHHHHhHHHHHHHcCCCEEEe
Confidence 4679999999 999999941 1 16777
Q ss_pred ecCCCChHHHHHhhcccc--CCCCeEEEEEeCchh
Q 028124 156 YELPTKKETYIRRMTTCL--AADGSVINIVVGGEV 188 (213)
Q Consensus 156 yd~P~~~~~yi~R~GR~~--~~~g~~i~~~~~~e~ 188 (213)
-..|.|..-=-|=.||+| |.+|.+-.|++-+|.
T Consensus 559 TerheSrRID~QLrGRaGRQGDPGsS~f~lSlED~ 593 (913)
T PRK13103 559 SERHESRRIDNQLRGRAGRQGDPGSSRFYLSLEDS 593 (913)
T ss_pred eccCchHHHHHHhccccccCCCCCceEEEEEcCcH
Confidence 778877655566668875 567988888876543
No 141
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=97.17 E-value=0.016 Score=57.66 Aligned_cols=90 Identities=16% Similarity=0.200 Sum_probs=63.8
Q ss_pred HHHHHHHHHHhhcCCCCCCcEEEEeCchHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhcccccccccccccC
Q 028124 36 METLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQS 115 (213)
Q Consensus 36 ~~~L~~ll~~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~~~~~~~~~~ 115 (213)
.+.+.+.+..+.. ..++++|+++|.+..+.+++.|.... +.. ...|.-. .|.+++++|+.++
T Consensus 633 ~~~~~~~i~~~~~---~~g~~LVLFtS~~~l~~v~~~l~~~~-~~~-l~Qg~~~--~~~~l~~~F~~~~----------- 694 (820)
T PRK07246 633 AEEIAKRLEELKQ---LQQPILVLFNSKKHLLAVSDLLDQWQ-VSH-LAQEKNG--TAYNIKKRFDRGE----------- 694 (820)
T ss_pred HHHHHHHHHHHHh---cCCCEEEEECcHHHHHHHHHHHhhcC-CcE-EEeCCCc--cHHHHHHHHHcCC-----------
Confidence 3355555544332 46799999999999999999997653 344 4445321 2566899999874
Q ss_pred CCCCcCCCCCCceeEEEEeCCCCCcCcCCCCCC--CCCEEEEecCC
Q 028124 116 GDESETGKDEHKSHMIVVTDACLPLLSSGESAI--SARVLINYELP 159 (213)
Q Consensus 116 ~~~~~~~~~~~~~~iLV~Td~~~~~~~rGld~~--~v~~VI~yd~P 159 (213)
..||++|.. +.+|+|+| +...||...+|
T Consensus 695 ------------~~vLlG~~s----FwEGVD~p~~~~~~viI~kLP 724 (820)
T PRK07246 695 ------------QQILLGLGS----FWEGVDFVQADRMIEVITRLP 724 (820)
T ss_pred ------------CeEEEecch----hhCCCCCCCCCeEEEEEecCC
Confidence 679999998 99999997 35556655555
No 142
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=97.10 E-value=0.0022 Score=62.74 Aligned_cols=56 Identities=11% Similarity=0.115 Sum_probs=43.5
Q ss_pred CceeEEEEeCCCCCcCcCCCCCCCCCEEEEe--------cCCCC----------hHHHHHhhccccCC-CCeEEEEEeC
Q 028124 126 HKSHMIVVTDACLPLLSSGESAISARVLINY--------ELPTK----------KETYIRRMTTCLAA-DGSVINIVVG 185 (213)
Q Consensus 126 ~~~~iLV~Td~~~~~~~rGld~~~v~~VI~y--------d~P~~----------~~~yi~R~GR~~~~-~g~~i~~~~~ 185 (213)
+..-++|+|++ ++-.+.+|++.+||.. |--.. -++--||+||+|+. +|.||-++..
T Consensus 629 g~RLcVVaTNV----AETSLTIPgIkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASadQRAGRAGRtgpGHcYRLYSS 703 (1172)
T KOG0926|consen 629 GERLCVVATNV----AETSLTIPGIKYVVDCGRVKERLYDSKTGVSSFEVDWISKASADQRAGRAGRTGPGHCYRLYSS 703 (1172)
T ss_pred CceEEEEeccc----hhcccccCCeeEEEeccchhhhccccccCceeEEEEeeeccccchhccccCCCCCCceeehhhh
Confidence 33558899999 9999999999999964 43222 34447999999876 4999999875
No 143
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=97.02 E-value=0.0084 Score=57.97 Aligned_cols=131 Identities=16% Similarity=0.208 Sum_probs=97.2
Q ss_pred ecCcchHHHHHHHHHHHhhcCCCCCCcEEEEeCchHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhccccccc
Q 028124 29 VDRLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWN 108 (213)
Q Consensus 29 ~~~~~~K~~~L~~ll~~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~~~ 108 (213)
......|+....+.++.+.. ....+++|...-.....-+...|.+.| .....+||....++|+.+++.|....
T Consensus 724 ~~r~S~Ki~~~l~~le~i~~--~skeK~viVSQwtsvLniv~~hi~~~g-~~y~si~Gqv~vK~Rq~iv~~FN~~k---- 796 (901)
T KOG4439|consen 724 PDRPSCKIAMVLEILETILT--SSKEKVVIVSQWTSVLNIVRKHIQKGG-HIYTSITGQVLVKDRQEIVDEFNQEK---- 796 (901)
T ss_pred cccchhHHHHHHHHHHHHhh--cccceeeehhHHHHHHHHHHHHHhhCC-eeeeeecCccchhHHHHHHHHHHhcc----
Confidence 34445689999998887622 456788887777777777888888888 79999999999999999999998742
Q ss_pred ccccccCCCCCcCCCCCCceeEEEEeCCCCCcCcCCCCCCCCCEEEEecCCCChHHHHHhhccc--cCCC--CeEEEEEe
Q 028124 109 QKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTC--LAAD--GSVINIVV 184 (213)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~rGld~~~v~~VI~yd~P~~~~~yi~R~GR~--~~~~--g~~i~~~~ 184 (213)
++..-.|+.=.+ .+-|+++..++++|..|+.|++.-=-|-+.|. .|+. -...-|+.
T Consensus 797 ----------------~~~rVmLlSLtA----GGVGLNL~GaNHlilvDlHWNPaLEqQAcDRIYR~GQkK~V~IhR~~~ 856 (901)
T KOG4439|consen 797 ----------------GGARVMLLSLTA----GGVGLNLIGANHLILVDLHWNPALEQQACDRIYRMGQKKDVFIHRLMC 856 (901)
T ss_pred ----------------CCceEEEEEEcc----CcceeeecccceEEEEecccCHHHHHHHHHHHHHhcccCceEEEEEEe
Confidence 223445555556 79999999999999999999987766666662 3333 33444555
Q ss_pred Cc
Q 028124 185 GG 186 (213)
Q Consensus 185 ~~ 186 (213)
.+
T Consensus 857 ~g 858 (901)
T KOG4439|consen 857 KG 858 (901)
T ss_pred cC
Confidence 54
No 144
>COG4889 Predicted helicase [General function prediction only]
Probab=96.99 E-value=0.00071 Score=66.72 Aligned_cols=108 Identities=12% Similarity=0.154 Sum_probs=75.6
Q ss_pred CCcEEEEeCchHHHHHHHHHHhc-----------c-CCceEEE--ecCCCCHHHHHHHHHHHhcccccccccccccCCCC
Q 028124 53 GLPMIVCCSSRDELDAVCSAVSN-----------L-ADISFSS--LHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDE 118 (213)
Q Consensus 53 ~~~~IIF~~~~~~~~~l~~~L~~-----------~-~~~~~~~--lhg~~~~~~R~~~l~~Fr~g~~~~~~~~~~~~~~~ 118 (213)
.++.|-||.+.++...++..+.. . .++++.+ +.|.|+..+|...+.- .+. ++
T Consensus 460 ~~RAIaF~k~I~tSK~i~~sFe~Vve~Y~~Elk~d~~nL~iSi~HvDGtmNal~R~~l~~l-~~~-~~------------ 525 (1518)
T COG4889 460 MQRAIAFAKDIKTSKQIAESFETVVEAYDEELKKDFKNLKISIDHVDGTMNALERLDLLEL-KNT-FE------------ 525 (1518)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEeecccccccHHHHHHHHhc-cCC-CC------------
Confidence 47889999998888877665532 1 2345544 5588999998443332 111 00
Q ss_pred CcCCCCCCceeEEEEeCCCCCcCcCCCCCCCCCEEEEecCCCChHHHHHhhccc-----cCCCCeEEEEEe
Q 028124 119 SETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTC-----LAADGSVINIVV 184 (213)
Q Consensus 119 ~~~~~~~~~~~iLV~Td~~~~~~~rGld~~~v~~VI~yd~P~~~~~yi~R~GR~-----~~~~g~~i~~~~ 184 (213)
...++||=-... +++|+|+|..+.||.||+-.+..+.+|-+||. +..-|.+|.-+.
T Consensus 526 ------~neckIlSNaRc----LSEGVDVPaLDsViFf~pr~smVDIVQaVGRVMRKa~gK~yGYIILPIa 586 (1518)
T COG4889 526 ------PNECKILSNARC----LSEGVDVPALDSVIFFDPRSSMVDIVQAVGRVMRKAKGKKYGYIILPIA 586 (1518)
T ss_pred ------cchheeeccchh----hhcCCCccccceEEEecCchhHHHHHHHHHHHHHhCcCCccceEEEEec
Confidence 123666655554 99999999999999999999999999999995 233488887663
No 145
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=96.98 E-value=0.016 Score=55.86 Aligned_cols=80 Identities=18% Similarity=0.208 Sum_probs=61.8
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhcccccccccccccCCCCCcCCCCCCceeEE
Q 028124 52 PGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMI 131 (213)
Q Consensus 52 ~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~~~~~~~~~~~~~~~~~~~~~~~~iL 131 (213)
..++++||+++...++.+++.++..........+|. ..+..++++|+.+. ..-++
T Consensus 478 ~~~~~lvlF~Sy~~l~~~~~~~~~~~~~~~v~~q~~---~~~~~~l~~f~~~~----------------------~~~~l 532 (654)
T COG1199 478 SPGGVLVLFPSYEYLKRVAERLKDERSTLPVLTQGE---DEREELLEKFKASG----------------------EGLIL 532 (654)
T ss_pred cCCCEEEEeccHHHHHHHHHHHhhcCccceeeecCC---CcHHHHHHHHHHhc----------------------CCeEE
Confidence 445999999999999999999987641134556665 44558999999973 11799
Q ss_pred EEeCCCCCcCcCCCCCCCC--CEEEEecCCC
Q 028124 132 VVTDACLPLLSSGESAISA--RVLINYELPT 160 (213)
Q Consensus 132 V~Td~~~~~~~rGld~~~v--~~VI~yd~P~ 160 (213)
|+|.. +++|+|+++- +.||...+|.
T Consensus 533 v~~gs----f~EGVD~~g~~l~~vvI~~lPf 559 (654)
T COG1199 533 VGGGS----FWEGVDFPGDALRLVVIVGLPF 559 (654)
T ss_pred Eeecc----ccCcccCCCCCeeEEEEEecCC
Confidence 99999 9999999866 6788777664
No 146
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=96.96 E-value=0.0052 Score=61.20 Aligned_cols=128 Identities=17% Similarity=0.198 Sum_probs=98.0
Q ss_pred chHHHHHHHHHHHhhcCCCCCCcEEEEeCchHHHHHHHHHHhcc---C------------------CceEEEecCCCCHH
Q 028124 33 QFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNL---A------------------DISFSSLHSDLAET 91 (213)
Q Consensus 33 ~~K~~~L~~ll~~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~---~------------------~~~~~~lhg~~~~~ 91 (213)
..|+-+|.++|+.- ..-+.++|||..+..+.+.|-.+|... | +..-.-|.|.....
T Consensus 1125 SgKmiLLleIL~mc---eeIGDKlLVFSQSL~SLdLIe~fLe~v~r~gk~~~d~~~~~~~eGkW~~GkDyyriDGst~s~ 1201 (1567)
T KOG1015|consen 1125 SGKMILLLEILRMC---EEIGDKLLVFSQSLISLDLIEDFLELVSREGKEDKDKPLIYKGEGKWLRGKDYYRLDGSTTSQ 1201 (1567)
T ss_pred CcceehHHHHHHHH---HHhcceeEEeecccchhHHHHHHHHhhcccCccccccccccccccceecCCceEEecCcccHH
Confidence 44999999999652 235799999999999999988888532 1 13356678888999
Q ss_pred HHHHHHHHHhcccccccccccccCCCCCcCCCCCCceeEEEEeCCCCCcCcCCCCCCCCCEEEEecCCCChHHHHHhhcc
Q 028124 92 ERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTT 171 (213)
Q Consensus 92 ~R~~~l~~Fr~g~~~~~~~~~~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~rGld~~~v~~VI~yd~P~~~~~yi~R~GR 171 (213)
.|....++|.... |. .-.-.||+|.+ .+-|+++-.++-||.||..|++..=+|-+=|
T Consensus 1202 ~R~k~~~~FNdp~-----------------Nl--RaRl~LISTRA----GsLGiNLvAANRVIIfDasWNPSyDtQSIFR 1258 (1567)
T KOG1015|consen 1202 SRKKWAEEFNDPT-----------------NL--RARLFLISTRA----GSLGINLVAANRVIIFDASWNPSYDTQSIFR 1258 (1567)
T ss_pred HHHHHHHHhcCcc-----------------cc--eeEEEEEeecc----CccccceeecceEEEEecccCCccchHHHHH
Confidence 9999999998864 00 01348999999 9999999999999999999999887776666
Q ss_pred c--cC--CCCeEEEEEeCc
Q 028124 172 C--LA--ADGSVINIVVGG 186 (213)
Q Consensus 172 ~--~~--~~g~~i~~~~~~ 186 (213)
. .| ++-++|-|+..+
T Consensus 1259 vyRfGQtKPvyiYRfiAqG 1277 (1567)
T KOG1015|consen 1259 VYRFGQTKPVYIYRFIAQG 1277 (1567)
T ss_pred HHhhcCcCceeehhhhhcc
Confidence 3 33 345677777543
No 147
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=96.94 E-value=0.005 Score=60.25 Aligned_cols=92 Identities=11% Similarity=0.183 Sum_probs=67.4
Q ss_pred HHHHHHHHHhcc-CCceEEEecCCCCHHH--HHHHHHHHhcccccccccccccCCCCCcCCCCCCceeEEEEeCCCCCcC
Q 028124 65 ELDAVCSAVSNL-ADISFSSLHSDLAETE--RTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLL 141 (213)
Q Consensus 65 ~~~~l~~~L~~~-~~~~~~~lhg~~~~~~--R~~~l~~Fr~g~~~~~~~~~~~~~~~~~~~~~~~~~~iLV~Td~~~~~~ 141 (213)
-++++.+.|.+. ++.+++.+.+|..... -...+.+|..|+ .+|||.|.+ +
T Consensus 492 GterieeeL~~~FP~~rv~r~d~Dtt~~k~~~~~~l~~~~~ge-----------------------~dILiGTQm----i 544 (730)
T COG1198 492 GTERIEEELKRLFPGARIIRIDSDTTRRKGALEDLLDQFANGE-----------------------ADILIGTQM----I 544 (730)
T ss_pred cHHHHHHHHHHHCCCCcEEEEccccccchhhHHHHHHHHhCCC-----------------------CCeeecchh----h
Confidence 567788888754 6678999999875533 467899999995 999999999 9
Q ss_pred cCCCCCCCCCEEEEecC------CC------ChHHHHHhhccccC--CCCeEEEEE
Q 028124 142 SSGESAISARVLINYEL------PT------KKETYIRRMTTCLA--ADGSVINIV 183 (213)
Q Consensus 142 ~rGld~~~v~~VI~yd~------P~------~~~~yi~R~GR~~~--~~g~~i~~~ 183 (213)
+.|.|+|++..|.-.|. |. ....+.|=.||+|+ .+|.++.-.
T Consensus 545 aKG~~fp~vtLVgvl~aD~~L~~~DfRA~Er~fqll~QvaGRAgR~~~~G~VvIQT 600 (730)
T COG1198 545 AKGHDFPNVTLVGVLDADTGLGSPDFRASERTFQLLMQVAGRAGRAGKPGEVVIQT 600 (730)
T ss_pred hcCCCcccceEEEEEechhhhcCCCcchHHHHHHHHHHHHhhhccCCCCCeEEEEe
Confidence 99999999998665432 21 23445676788754 556555544
No 148
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=96.71 E-value=0.013 Score=58.12 Aligned_cols=87 Identities=10% Similarity=0.200 Sum_probs=65.6
Q ss_pred cCcchHHHHHHHHHHHhhcCCCCCCcEEEEeCchHHHHHHHHHHhccCCceEEEecCC-CCHHHHHHHHHHHhccccccc
Q 028124 30 DRLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSD-LAETERTLILEEFRHTAMKWN 108 (213)
Q Consensus 30 ~~~~~K~~~L~~ll~~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~lhg~-~~~~~R~~~l~~Fr~g~~~~~ 108 (213)
.....|+..+.+-+... ...++|++|-|.|....+.|+..|...| +...+|+.. .....=..++.+ .|.
T Consensus 404 ~t~~~K~~AI~~ei~~~---~~~grPVLIgT~SIe~SE~ls~~L~~~g-i~h~vLNAk~~~~~~EA~IIA~--AG~---- 473 (870)
T CHL00122 404 KDELSKWRAIADECLQM---HQTGRPILIGTTTIEKSELLSQLLKEYR-LPHQLLNAKPENVRRESEIVAQ--AGR---- 473 (870)
T ss_pred eCHHHHHHHHHHHHHHH---HhcCCCEEEeeCCHHHHHHHHHHHHHcC-CccceeeCCCccchhHHHHHHh--cCC----
Confidence 33444888887766553 2478999999999999999999999997 888888885 222222445554 332
Q ss_pred ccccccCCCCCcCCCCCCceeEEEEeCCCCCcCcCCCCCC
Q 028124 109 QKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAI 148 (213)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~rGld~~ 148 (213)
+-.|-|||.+ ++||.|+.
T Consensus 474 ------------------~G~VTIATNM----AGRGTDI~ 491 (870)
T CHL00122 474 ------------------KGSITIATNM----AGRGTDII 491 (870)
T ss_pred ------------------CCcEEEeccc----cCCCcCee
Confidence 5779999999 99999984
No 149
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=96.65 E-value=0.0045 Score=61.69 Aligned_cols=77 Identities=19% Similarity=0.240 Sum_probs=62.3
Q ss_pred EEEecCCCCHHHHHHHHHHHhcccccccccccccCCCCCcCCCCCCceeEEEEeCCCCCcCcCCCCCCCCCEEEE-ec-C
Q 028124 81 FSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLIN-YE-L 158 (213)
Q Consensus 81 ~~~lhg~~~~~~R~~~l~~Fr~g~~~~~~~~~~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~rGld~~~v~~VI~-yd-~ 158 (213)
+...|++|+..+|..+---||.|. ..+|++|.. ++-|++.| +++|+. -| +
T Consensus 965 iG~HHaglNr~yR~~VEvLFR~g~-----------------------L~VlfaT~T----LsLGiNMP-CrTVvF~gDsL 1016 (1330)
T KOG0949|consen 965 IGVHHAGLNRKYRSLVEVLFRQGH-----------------------LQVLFATET----LSLGINMP-CRTVVFAGDSL 1016 (1330)
T ss_pred ccccccccchHHHHHHHHHhhcCc-----------------------eEEEEEeee----hhcccCCC-ceeEEEecccc
Confidence 456889999999999888999995 999999999 99999999 555554 33 3
Q ss_pred CCChHHHHHhhccccCCC----CeEEEEEeC
Q 028124 159 PTKKETYIRRMTTCLAAD----GSVINIVVG 185 (213)
Q Consensus 159 P~~~~~yi~R~GR~~~~~----g~~i~~~~~ 185 (213)
--++-.|-|.+||+|++. |.|+.+--+
T Consensus 1017 QL~plny~QmaGRAGRRGFD~lGnV~FmgiP 1047 (1330)
T KOG0949|consen 1017 QLDPLNYKQMAGRAGRRGFDTLGNVVFMGIP 1047 (1330)
T ss_pred ccCchhHHhhhccccccccccccceEEEeCc
Confidence 347889999999987664 777766655
No 150
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=96.49 E-value=0.02 Score=57.01 Aligned_cols=86 Identities=14% Similarity=0.187 Sum_probs=66.2
Q ss_pred CcchHHHHHHHHHHHhhcCCCCCCcEEEEeCchHHHHHHHHHHhccCCceEEEecCC-CCHHHHHHHHHHHhcccccccc
Q 028124 31 RLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSD-LAETERTLILEEFRHTAMKWNQ 109 (213)
Q Consensus 31 ~~~~K~~~L~~ll~~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~lhg~-~~~~~R~~~l~~Fr~g~~~~~~ 109 (213)
....|+..+.+-+...- ..++|++|-|.|....+.|+..|...| +...+|+.. ...+.=..++.+ .|.
T Consensus 420 t~~~K~~Ai~~ei~~~~---~~GrPVLIgT~SVe~SE~ls~~L~~~g-i~h~vLNAk~~~~~~EA~IIa~--AG~----- 488 (939)
T PRK12902 420 TEIAKWRAVANETAEMH---KQGRPVLVGTTSVEKSELLSALLQEQG-IPHNLLNAKPENVEREAEIVAQ--AGR----- 488 (939)
T ss_pred CHHHHHHHHHHHHHHHH---hCCCCEEEeeCCHHHHHHHHHHHHHcC-CchheeeCCCcchHhHHHHHHh--cCC-----
Confidence 33458988888776532 478999999999999999999999997 888888885 333333455555 332
Q ss_pred cccccCCCCCcCCCCCCceeEEEEeCCCCCcCcCCCCCC
Q 028124 110 KVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAI 148 (213)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~rGld~~ 148 (213)
+-.|-|||.+ ++||.|+.
T Consensus 489 -----------------~GaVTIATNM----AGRGTDIk 506 (939)
T PRK12902 489 -----------------KGAVTIATNM----AGRGTDII 506 (939)
T ss_pred -----------------CCcEEEeccC----CCCCcCEe
Confidence 4679999999 99999984
No 151
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=96.29 E-value=0.084 Score=51.16 Aligned_cols=83 Identities=11% Similarity=-0.021 Sum_probs=61.7
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhcccccccccccccCCCCCcCCCCCCceeEE
Q 028124 52 PGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMI 131 (213)
Q Consensus 52 ~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~~~~~~~~~~~~~~~~~~~~~~~~iL 131 (213)
..++++|-+.+...++.+++.|...- -..+.+.|+.+ .+..++++|+... ..+.-.||
T Consensus 469 ~~G~~lvLfTS~~~~~~~~~~l~~~l-~~~~l~qg~~~--~~~~l~~~f~~~~-------------------~~~~~~vL 526 (636)
T TIGR03117 469 AQGGTLVLTTAFSHISAIGQLVELGI-PAEIVIQSEKN--RLASAEQQFLALY-------------------ANGIQPVL 526 (636)
T ss_pred cCCCEEEEechHHHHHHHHHHHHhhc-CCCEEEeCCCc--cHHHHHHHHHHhh-------------------cCCCCcEE
Confidence 55688888889999999999997542 13456667543 5577899999840 00126799
Q ss_pred EEeCCCCCcCcCCCCC----------CCCCEEEEecCCC
Q 028124 132 VVTDACLPLLSSGESA----------ISARVLINYELPT 160 (213)
Q Consensus 132 V~Td~~~~~~~rGld~----------~~v~~VI~yd~P~ 160 (213)
++|+. +-+|+|+ ..+++||...+|.
T Consensus 527 ~gt~s----fweGvDv~~~~~~p~~G~~Ls~ViI~kLPF 561 (636)
T TIGR03117 527 IAAGG----AWTGIDLTHKPVSPDKDNLLTDLIITCAPF 561 (636)
T ss_pred EeCCc----cccccccCCccCCCCCCCcccEEEEEeCCC
Confidence 99999 9999999 3478899887773
No 152
>PRK05580 primosome assembly protein PriA; Validated
Probab=96.27 E-value=0.059 Score=52.64 Aligned_cols=102 Identities=15% Similarity=0.077 Sum_probs=78.7
Q ss_pred EEEEecCcchHHHHHHHHHHHhhcCCCCCCcEEEEeCchHHHHHHHHHHhcc-CCceEEEecCCCCHHHHHHHHHHHhcc
Q 028124 25 FYVAVDRLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNL-ADISFSSLHSDLAETERTLILEEFRHT 103 (213)
Q Consensus 25 ~~~~~~~~~~K~~~L~~ll~~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~-~~~~~~~lhg~~~~~~R~~~l~~Fr~g 103 (213)
..+..+...-|......++..... .+.++||.++++.-+..+.+.|++. | ..+..+||+++..+|.+.+.+.+.|
T Consensus 165 ~Ll~~~TGSGKT~v~l~~i~~~l~---~g~~vLvLvPt~~L~~Q~~~~l~~~fg-~~v~~~~s~~s~~~r~~~~~~~~~g 240 (679)
T PRK05580 165 FLLDGVTGSGKTEVYLQAIAEVLA---QGKQALVLVPEIALTPQMLARFRARFG-APVAVLHSGLSDGERLDEWRKAKRG 240 (679)
T ss_pred EEEECCCCChHHHHHHHHHHHHHH---cCCeEEEEeCcHHHHHHHHHHHHHHhC-CCEEEEECCCCHHHHHHHHHHHHcC
Confidence 444444444488887777655332 3679999999999999999999864 5 6899999999999999999999987
Q ss_pred cccccccccccCCCCCcCCCCCCceeEEEEeCCCCCcCcCCCCCCCCCEEEEecC
Q 028124 104 AMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYEL 158 (213)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~rGld~~~v~~VI~yd~ 158 (213)
+ .+|+|+|.. . --+.+.++.+||--+-
T Consensus 241 ~-----------------------~~IVVgTrs----a-l~~p~~~l~liVvDEe 267 (679)
T PRK05580 241 E-----------------------AKVVIGARS----A-LFLPFKNLGLIIVDEE 267 (679)
T ss_pred C-----------------------CCEEEeccH----H-hcccccCCCEEEEECC
Confidence 4 899999985 2 2255778888886653
No 153
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=96.20 E-value=0.045 Score=51.30 Aligned_cols=137 Identities=13% Similarity=0.208 Sum_probs=90.8
Q ss_pred CceEEEEEecCcchHHHHHHH-HHHHhhcCCCCCCcEEEEeCchHHHHHHHHHHhcc--------CCceEEEecCCCCHH
Q 028124 21 QPRHFYVAVDRLQFKMETLVE-LLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNL--------ADISFSSLHSDLAET 91 (213)
Q Consensus 21 ~i~~~~~~~~~~~~K~~~L~~-ll~~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~--------~~~~~~~lhg~~~~~ 91 (213)
.+.-+|-.-+..+ .++.... .++-... ...+-+++|....++.+..++.+... |.+++..+| +.
T Consensus 223 PvEi~Yt~e~erD-ylEaairtV~qih~~--ee~GDilvFLtgeeeIe~aC~~i~re~~~L~~~~g~l~v~PLy----P~ 295 (699)
T KOG0925|consen 223 PVEIFYTPEPERD-YLEAAIRTVLQIHMC--EEPGDILVFLTGEEEIEDACRKISREVDNLGPQVGPLKVVPLY----PA 295 (699)
T ss_pred ceEEEecCCCChh-HHHHHHHHHHHHHhc--cCCCCEEEEecCHHHHHHHHHHHHHHHHhhccccCCceEEecC----ch
Confidence 3555655544444 4444444 4432222 34678999999999998888888643 447888898 33
Q ss_pred HHHHHHHHHhcccccccccccccCCCCCcCCCCCCceeEEEEeCCCCCcCcCCCCCCCCCEEEEecC-------------
Q 028124 92 ERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYEL------------- 158 (213)
Q Consensus 92 ~R~~~l~~Fr~g~~~~~~~~~~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~rGld~~~v~~VI~yd~------------- 158 (213)
++..+++--.. +..+.-..+++|+|.+ ++-.+.++.+.+||.-.+
T Consensus 296 ~qq~iFep~p~------------------~~~~~~~RkvVvstni----aetsltidgiv~VIDpGf~kqkVYNPRIRve 353 (699)
T KOG0925|consen 296 QQQRIFEPAPE------------------KRNGAYGRKVVVSTNI----AETSLTIDGIVFVIDPGFSKQKVYNPRIRVE 353 (699)
T ss_pred hhccccCCCCc------------------ccCCCccceEEEEecc----hheeeeeccEEEEecCchhhhcccCcceeee
Confidence 43333322111 1112234789999999 999999999999997443
Q ss_pred -----CCChHHHHHhhccccC-CCCeEEEEEeCc
Q 028124 159 -----PTKKETYIRRMTTCLA-ADGSVINIVVGG 186 (213)
Q Consensus 159 -----P~~~~~yi~R~GR~~~-~~g~~i~~~~~~ 186 (213)
|-|..+-.||.||+|+ ++|.|+-+++++
T Consensus 354 sllv~PISkasA~qR~gragrt~pGkcfrLYte~ 387 (699)
T KOG0925|consen 354 SLLVSPISKASAQQRAGRAGRTRPGKCFRLYTEE 387 (699)
T ss_pred eeeeccchHhHHHHHhhhccCCCCCceEEeecHH
Confidence 3356777899999865 569999999853
No 154
>PRK14873 primosome assembly protein PriA; Provisional
Probab=96.17 E-value=0.051 Score=52.97 Aligned_cols=95 Identities=12% Similarity=0.079 Sum_probs=79.4
Q ss_pred hHHHHHHHHHHHhhcCCCCCCcEEEEeCchHHHHHHHHHHhcc-CCceEEEecCCCCHHHHHHHHHHHhccccccccccc
Q 028124 34 FKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNL-ADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVT 112 (213)
Q Consensus 34 ~K~~~L~~ll~~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~-~~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~~~~~~~ 112 (213)
-|.+.+.++++.... .++++||.++....+..+.+.|+.. |...+..+|+++++.+|.+.+.+.++|+
T Consensus 172 GKTevyl~~i~~~l~---~Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~G~-------- 240 (665)
T PRK14873 172 DWARRLAAAAAATLR---AGRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLRGQ-------- 240 (665)
T ss_pred cHHHHHHHHHHHHHH---cCCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhCCC--------
Confidence 488888898877543 5789999999999999999999865 3247899999999999999999999985
Q ss_pred ccCCCCCcCCCCCCceeEEEEeCCCCCcCcCCCCCCCCCEEEEecCC
Q 028124 113 EQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELP 159 (213)
Q Consensus 113 ~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~rGld~~~v~~VI~yd~P 159 (213)
.+|+|.|-. +--.=+++...||-.|-.
T Consensus 241 ---------------~~IViGtRS-----AvFaP~~~LgLIIvdEEh 267 (665)
T PRK14873 241 ---------------ARVVVGTRS-----AVFAPVEDLGLVAIWDDG 267 (665)
T ss_pred ---------------CcEEEEcce-----eEEeccCCCCEEEEEcCC
Confidence 899999995 555667788888877643
No 155
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=96.09 E-value=0.031 Score=54.48 Aligned_cols=103 Identities=17% Similarity=0.124 Sum_probs=76.9
Q ss_pred EEEEecCcchHHHHHH-HHHHHhhcCCCCCCcEEEEeCchHHHHHHHHHHhcc----CCceEEEecCCCCHHHHHHHHHH
Q 028124 25 FYVAVDRLQFKMETLV-ELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNL----ADISFSSLHSDLAETERTLILEE 99 (213)
Q Consensus 25 ~~~~~~~~~~K~~~L~-~ll~~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~----~~~~~~~lhg~~~~~~R~~~l~~ 99 (213)
..+..+...=|..+.. .++..+ .++.+++|-++|+.-|...++.++.. + +++..+||+++..+|.+.++.
T Consensus 285 ~Ll~~~TGSGKT~va~~~il~~~----~~g~q~lilaPT~~LA~Q~~~~l~~l~~~~~-i~v~ll~G~~~~~~r~~~~~~ 359 (681)
T PRK10917 285 RLLQGDVGSGKTVVAALAALAAI----EAGYQAALMAPTEILAEQHYENLKKLLEPLG-IRVALLTGSLKGKERREILEA 359 (681)
T ss_pred EEEECCCCCcHHHHHHHHHHHHH----HcCCeEEEEeccHHHHHHHHHHHHHHHhhcC-cEEEEEcCCCCHHHHHHHHHH
Confidence 4444444433554433 233332 34679999999999999888887653 4 789999999999999999999
Q ss_pred HhcccccccccccccCCCCCcCCCCCCceeEEEEeCCCCCcCcCCCCCCCCCEEEEecC
Q 028124 100 FRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYEL 158 (213)
Q Consensus 100 Fr~g~~~~~~~~~~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~rGld~~~v~~VI~yd~ 158 (213)
..+|. .+|+|+|..- +...+.+.++.+||.-..
T Consensus 360 l~~g~-----------------------~~IvVgT~~l---l~~~v~~~~l~lvVIDE~ 392 (681)
T PRK10917 360 IASGE-----------------------ADIVIGTHAL---IQDDVEFHNLGLVIIDEQ 392 (681)
T ss_pred HhCCC-----------------------CCEEEchHHH---hcccchhcccceEEEech
Confidence 99985 9999999862 556678889998886543
No 156
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.00 E-value=0.052 Score=51.19 Aligned_cols=92 Identities=15% Similarity=0.128 Sum_probs=72.2
Q ss_pred HHHHHHHHHHHhhcCCCCCCcEEEEeCchHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhccccccccccccc
Q 028124 35 KMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQ 114 (213)
Q Consensus 35 K~~~L~~ll~~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~~~~~~~~~ 114 (213)
|..+...++..... .++++||.+++..-+..+++.|++.-+..+..+||+++..+|.+.+.+.++|+
T Consensus 10 KT~v~l~~i~~~l~---~g~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er~~~~~~~~~g~---------- 76 (505)
T TIGR00595 10 KTEVYLQAIEKVLA---LGKSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSEKLQAWRKVKNGE---------- 76 (505)
T ss_pred HHHHHHHHHHHHHH---cCCeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHcCC----------
Confidence 77777766655332 46799999999999999999998652267899999999999999999988874
Q ss_pred CCCCCcCCCCCCceeEEEEeCCCCCcCcCCCCCCCCCEEEEec
Q 028124 115 SGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYE 157 (213)
Q Consensus 115 ~~~~~~~~~~~~~~~iLV~Td~~~~~~~rGld~~~v~~VI~yd 157 (213)
.+|+|+|.. + --..+.+..+||.-+
T Consensus 77 -------------~~IVVGTrs----a-lf~p~~~l~lIIVDE 101 (505)
T TIGR00595 77 -------------ILVVIGTRS----A-LFLPFKNLGLIIVDE 101 (505)
T ss_pred -------------CCEEECChH----H-HcCcccCCCEEEEEC
Confidence 889999985 2 224577888888654
No 157
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=95.98 E-value=0.06 Score=52.70 Aligned_cols=95 Identities=16% Similarity=0.224 Sum_probs=65.3
Q ss_pred HHHHHHHHHHhhcCCCCCCcEEEEeCchHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhcccccccccccccC
Q 028124 36 METLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQS 115 (213)
Q Consensus 36 ~~~L~~ll~~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~~~~~~~~~~ 115 (213)
.+.+.+.+..+.. ..+.++||+++....+.++..|..... .-+..+|. ..|.+++++|++.-
T Consensus 520 ~~~~~~~i~~l~~---~~gg~LVlFtSy~~l~~v~~~l~~~~~-~~ll~Q~~---~~~~~ll~~f~~~~----------- 581 (697)
T PRK11747 520 TAEMAEFLPELLE---KHKGSLVLFASRRQMQKVADLLPRDLR-LMLLVQGD---QPRQRLLEKHKKRV----------- 581 (697)
T ss_pred HHHHHHHHHHHHh---cCCCEEEEeCcHHHHHHHHHHHHHhcC-CcEEEeCC---chHHHHHHHHHHHh-----------
Confidence 4455555555433 344589999999999999999974321 33455664 35678888887520
Q ss_pred CCCCcCCCCCCceeEEEEeCCCCCcCcCCCCCCC--CCEEEEecCCC
Q 028124 116 GDESETGKDEHKSHMIVVTDACLPLLSSGESAIS--ARVLINYELPT 160 (213)
Q Consensus 116 ~~~~~~~~~~~~~~iLV~Td~~~~~~~rGld~~~--v~~VI~yd~P~ 160 (213)
..+...||++|.. +.+|+|+|+ +++||...+|-
T Consensus 582 --------~~~~~~VL~g~~s----f~EGVD~pGd~l~~vII~kLPF 616 (697)
T PRK11747 582 --------DEGEGSVLFGLQS----FAEGLDLPGDYLTQVIITKIPF 616 (697)
T ss_pred --------ccCCCeEEEEecc----ccccccCCCCceEEEEEEcCCC
Confidence 0012569999988 999999986 67888876663
No 158
>PF13871 Helicase_C_4: Helicase_C-like
Probab=95.55 E-value=0.099 Score=45.68 Aligned_cols=67 Identities=24% Similarity=0.310 Sum_probs=48.2
Q ss_pred eeEEEEeCCCCCcCcCCCCCCC--------CCEEEEecCCCChHHHHHhhccccCCC---CeEEEEEe---CchhHHHHH
Q 028124 128 SHMIVVTDACLPLLSSGESAIS--------ARVLINYELPTKKETYIRRMTTCLAAD---GSVINIVV---GGEVVTLRS 193 (213)
Q Consensus 128 ~~iLV~Td~~~~~~~rGld~~~--------v~~VI~yd~P~~~~~yi~R~GR~~~~~---g~~i~~~~---~~e~~~~~~ 193 (213)
..|+|.+++ .+.|+.++. -++-|-.++||+.+..+|..||+.+.. .-.+.++. ++|......
T Consensus 62 k~v~iis~A----gstGiSlHAd~~~~nqr~Rv~i~le~pwsad~aiQ~~GR~hRsnQ~~~P~y~~l~t~~~gE~Rfas~ 137 (278)
T PF13871_consen 62 KDVAIISDA----GSTGISLHADRRVKNQRRRVHITLELPWSADKAIQQFGRTHRSNQVSAPEYRFLVTDLPGERRFAST 137 (278)
T ss_pred ceEEEEecc----cccccchhccccCCCCCceEEEEeeCCCCHHHHHHHhccccccccccCCEEEEeecCCHHHHHHHHH
Confidence 899999999 999998874 346778899999999999999974332 33344443 246655555
Q ss_pred HHHHh
Q 028124 194 MEESL 198 (213)
Q Consensus 194 le~~l 198 (213)
+.+.+
T Consensus 138 va~rL 142 (278)
T PF13871_consen 138 VARRL 142 (278)
T ss_pred HHHHH
Confidence 55544
No 159
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=95.38 E-value=0.094 Score=51.53 Aligned_cols=103 Identities=17% Similarity=0.126 Sum_probs=83.2
Q ss_pred eEEEEEecCcchHHHHHHHHHHHhhcCCCCCCcEEEEeCchHHHHHHHHHHhcc-CCceEEEecCCCCHHHHHHHHHHHh
Q 028124 23 RHFYVAVDRLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNL-ADISFSSLHSDLAETERTLILEEFR 101 (213)
Q Consensus 23 ~~~~~~~~~~~~K~~~L~~ll~~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~-~~~~~~~lhg~~~~~~R~~~l~~Fr 101 (213)
..+++.--..+-|.+++.++++.... .++++||-++.......+.+.|..+ | .++..+|+++++.+|...+.+.+
T Consensus 218 ~~~Ll~GvTGSGKTEvYl~~i~~~L~---~GkqvLvLVPEI~Ltpq~~~rf~~rFg-~~v~vlHS~Ls~~er~~~W~~~~ 293 (730)
T COG1198 218 APFLLDGVTGSGKTEVYLEAIAKVLA---QGKQVLVLVPEIALTPQLLARFKARFG-AKVAVLHSGLSPGERYRVWRRAR 293 (730)
T ss_pred cceeEeCCCCCcHHHHHHHHHHHHHH---cCCEEEEEeccccchHHHHHHHHHHhC-CChhhhcccCChHHHHHHHHHHh
Confidence 34445444445599999999987654 6899999999999999888888765 6 79999999999999999999999
Q ss_pred cccccccccccccCCCCCcCCCCCCceeEEEEeCCCCCcCcCCCCCCCCCEEEEec
Q 028124 102 HTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYE 157 (213)
Q Consensus 102 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~rGld~~~v~~VI~yd 157 (213)
+|+ .+|+|.|-. +--.=+++...||-.+
T Consensus 294 ~G~-----------------------~~vVIGtRS-----AlF~Pf~~LGLIIvDE 321 (730)
T COG1198 294 RGE-----------------------ARVVIGTRS-----ALFLPFKNLGLIIVDE 321 (730)
T ss_pred cCC-----------------------ceEEEEech-----hhcCchhhccEEEEec
Confidence 996 999999985 4555667777777543
No 160
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=95.34 E-value=0.075 Score=51.36 Aligned_cols=103 Identities=17% Similarity=0.153 Sum_probs=76.0
Q ss_pred EEEEecCcchHHHHH-HHHHHHhhcCCCCCCcEEEEeCchHHHHHHHHHHhcc----CCceEEEecCCCCHHHHHHHHHH
Q 028124 25 FYVAVDRLQFKMETL-VELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNL----ADISFSSLHSDLAETERTLILEE 99 (213)
Q Consensus 25 ~~~~~~~~~~K~~~L-~~ll~~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~----~~~~~~~lhg~~~~~~R~~~l~~ 99 (213)
..+..+...=|..+. ..++..+ ..+.+++|-++|+.-|..+++.+++. + +++..+||+++..+|...++.
T Consensus 259 ~Ll~g~TGSGKT~va~l~il~~~----~~g~qvlilaPT~~LA~Q~~~~~~~l~~~~g-i~v~lltg~~~~~~r~~~~~~ 333 (630)
T TIGR00643 259 RLLQGDVGSGKTLVAALAMLAAI----EAGYQVALMAPTEILAEQHYNSLRNLLAPLG-IEVALLTGSLKGKRRKELLET 333 (630)
T ss_pred EEEECCCCCcHHHHHHHHHHHHH----HcCCcEEEECCHHHHHHHHHHHHHHHhcccC-cEEEEEecCCCHHHHHHHHHH
Confidence 344444433355433 3334432 34679999999999999888877653 4 899999999999999999999
Q ss_pred HhcccccccccccccCCCCCcCCCCCCceeEEEEeCCCCCcCcCCCCCCCCCEEEEecC
Q 028124 100 FRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYEL 158 (213)
Q Consensus 100 Fr~g~~~~~~~~~~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~rGld~~~v~~VI~yd~ 158 (213)
..+|+ .+++|+|..- +...+.+.++.+||.-+.
T Consensus 334 i~~g~-----------------------~~IiVgT~~l---l~~~~~~~~l~lvVIDEa 366 (630)
T TIGR00643 334 IASGQ-----------------------IHLVVGTHAL---IQEKVEFKRLALVIIDEQ 366 (630)
T ss_pred HhCCC-----------------------CCEEEecHHH---HhccccccccceEEEech
Confidence 99985 8999999972 556678888888886443
No 161
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.29 E-value=0.19 Score=49.15 Aligned_cols=98 Identities=18% Similarity=0.220 Sum_probs=66.7
Q ss_pred HHHHHHHHHHhhcCCCCCCcEEEEeCchHHHHHHHHHHhccCC------ceEEEecC-CCCHHHHHHHHHHHhccccccc
Q 028124 36 METLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLAD------ISFSSLHS-DLAETERTLILEEFRHTAMKWN 108 (213)
Q Consensus 36 ~~~L~~ll~~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~------~~~~~lhg-~~~~~~R~~~l~~Fr~g~~~~~ 108 (213)
.+.+.+.|..+.. ...+.++||+++....+.+++.+...+. .+.+..-+ ++ .++.+++++|+..-
T Consensus 507 ~~~l~~~i~~~~~--~~pgg~lvfFpSy~~l~~v~~~~~~~~~~~~i~~~k~i~~E~~~~--~~~~~~l~~f~~~~---- 578 (705)
T TIGR00604 507 VRNLGELLVEFSK--IIPDGIVVFFPSYSYLENIVSTWKEMGILENIEKKKLIFVETKDA--QETSDALERYKQAV---- 578 (705)
T ss_pred HHHHHHHHHHHhh--cCCCcEEEEccCHHHHHHHHHHHHhcCHHHHHhcCCCEEEeCCCc--chHHHHHHHHHHHH----
Confidence 4556666655443 3457899999999999999988865420 02233322 22 57889999997631
Q ss_pred ccccccCCCCCcCCCCCCceeEEEEe--CCCCCcCcCCCCCCC--CCEEEEecCCC
Q 028124 109 QKVTEQSGDESETGKDEHKSHMIVVT--DACLPLLSSGESAIS--ARVLINYELPT 160 (213)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~iLV~T--d~~~~~~~rGld~~~--v~~VI~yd~P~ 160 (213)
..++-.+|+++ .- +++|+|+++ ++.||...+|.
T Consensus 579 ---------------~~~~gavL~av~gGk----~sEGIDf~~~~~r~ViivGlPf 615 (705)
T TIGR00604 579 ---------------SEGRGAVLLSVAGGK----VSEGIDFCDDLGRAVIMVGIPY 615 (705)
T ss_pred ---------------hcCCceEEEEecCCc----ccCccccCCCCCcEEEEEccCC
Confidence 00124588888 66 899999987 68899998886
No 162
>KOG0701 consensus dsRNA-specific nuclease Dicer and related ribonucleases [RNA processing and modification]
Probab=94.96 E-value=0.012 Score=61.57 Aligned_cols=92 Identities=12% Similarity=0.223 Sum_probs=74.4
Q ss_pred CcEEEEeCchHHHHHHHHHHhccCCceEEEecCCCCH-----------HHHHHHHHHHhcccccccccccccCCCCCcCC
Q 028124 54 LPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAE-----------TERTLILEEFRHTAMKWNQKVTEQSGDESETG 122 (213)
Q Consensus 54 ~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~lhg~~~~-----------~~R~~~l~~Fr~g~~~~~~~~~~~~~~~~~~~ 122 (213)
-..||||+...++..+.+.++...-.....+.|.+.+ ..+.+++..|+...
T Consensus 293 l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~k~~~~~~~~~~~~vl~~~~~~~------------------ 354 (1606)
T KOG0701|consen 293 LSGIIFVDQRYTAYVLLELLREIFSNDPLFVTGASGANLWKSFKNELELRQAEVLRRFHFHE------------------ 354 (1606)
T ss_pred hhheeecccchHHHHHHHHHHHhhccCcceeeccccCccchhhHHHHHhhhHHHHHHHhhhh------------------
Confidence 4679999999999999888876522233335554321 24566888888864
Q ss_pred CCCCceeEEEEeCCCCCcCcCCCCCCCCCEEEEecCCCChHHHHHhhccc
Q 028124 123 KDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTC 172 (213)
Q Consensus 123 ~~~~~~~iLV~Td~~~~~~~rGld~~~v~~VI~yd~P~~~~~yi~R~GR~ 172 (213)
.++|+.|.+ +..|+|++.++.|+.++.|.....|+|+.||+
T Consensus 355 -----ln~L~~~~~----~~e~~d~~~~~~~~~~~~~~~~~~~vq~~~r~ 395 (1606)
T KOG0701|consen 355 -----LNLLIATSV----LEEGVDVPKCNLVVLFDAPTYYRSYVQKKGRA 395 (1606)
T ss_pred -----hhHHHHHHH----HHhhcchhhhhhheeccCcchHHHHHHhhccc
Confidence 999999999 99999999999999999999999999999995
No 163
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=94.39 E-value=0.19 Score=50.77 Aligned_cols=62 Identities=18% Similarity=0.295 Sum_probs=52.4
Q ss_pred CCCCcEEEEeCchHHHHHHHHHHhccC------CceEEEecCCCCHHHHHHHHHHHhcccccccccccccCCCCCcCCCC
Q 028124 51 RPGLPMIVCCSSRDELDAVCSAVSNLA------DISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKD 124 (213)
Q Consensus 51 ~~~~~~IIF~~~~~~~~~l~~~L~~~~------~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~~~~~~~~~~~~~~~~~~~ 124 (213)
..++++++.++|..-+...++.|.+.+ ++.+. +||.|+.+++..++++|.+|.
T Consensus 123 ~kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~~~~~-yh~~l~~~ekee~le~i~~gd-------------------- 181 (1187)
T COG1110 123 KKGKRVYIIVPTTTLVRQVYERLKKFAEDAGSLDVLVV-YHSALPTKEKEEALERIESGD-------------------- 181 (1187)
T ss_pred hcCCeEEEEecCHHHHHHHHHHHHHHHhhcCCcceeee-eccccchHHHHHHHHHHhcCC--------------------
Confidence 456899999999999999888887652 12333 999999999999999999996
Q ss_pred CCceeEEEEeCC
Q 028124 125 EHKSHMIVVTDA 136 (213)
Q Consensus 125 ~~~~~iLV~Td~ 136 (213)
.+|||+|..
T Consensus 182 ---fdIlitTs~ 190 (1187)
T COG1110 182 ---FDILITTSQ 190 (1187)
T ss_pred ---ccEEEEeHH
Confidence 999999986
No 164
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=94.28 E-value=0.41 Score=48.48 Aligned_cols=103 Identities=17% Similarity=0.077 Sum_probs=77.7
Q ss_pred EEEEecCcchHHHHHHH-HHHHhhcCCCCCCcEEEEeCchHHHHHHHHHHhcc----CCceEEEecCCCCHHHHHHHHHH
Q 028124 25 FYVAVDRLQFKMETLVE-LLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNL----ADISFSSLHSDLAETERTLILEE 99 (213)
Q Consensus 25 ~~~~~~~~~~K~~~L~~-ll~~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~----~~~~~~~lhg~~~~~~R~~~l~~ 99 (213)
.++..+...=|..+... +++.+ ..+.+++|.++|+.-|...++.+++. + +++..++|..+..++.+++++
T Consensus 475 ~Ll~adTGsGKT~val~a~l~al----~~g~qvlvLvPT~~LA~Q~~~~f~~~~~~~~-i~v~~Lsg~~~~~e~~~~~~~ 549 (926)
T TIGR00580 475 RLVCGDVGFGKTEVAMRAAFKAV----LDGKQVAVLVPTTLLAQQHFETFKERFANFP-VTIELLSRFRSAKEQNEILKE 549 (926)
T ss_pred EEEECCCCccHHHHHHHHHHHHH----HhCCeEEEEeCcHHHHHHHHHHHHHHhccCC-cEEEEEeccccHHHHHHHHHH
Confidence 45555554446654433 33332 23579999999999999998887653 4 688899999999999999999
Q ss_pred HhcccccccccccccCCCCCcCCCCCCceeEEEEeCCCCCcCcCCCCCCCCCEEEEecC
Q 028124 100 FRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYEL 158 (213)
Q Consensus 100 Fr~g~~~~~~~~~~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~rGld~~~v~~VI~yd~ 158 (213)
++.|. .+|+|+|.. ++.+.+.+.++.+||--..
T Consensus 550 l~~g~-----------------------~dIVIGTp~---ll~~~v~f~~L~llVIDEa 582 (926)
T TIGR00580 550 LASGK-----------------------IDILIGTHK---LLQKDVKFKDLGLLIIDEE 582 (926)
T ss_pred HHcCC-----------------------ceEEEchHH---HhhCCCCcccCCEEEeecc
Confidence 99984 899999985 2667788899999886543
No 165
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=93.97 E-value=0.17 Score=51.50 Aligned_cols=107 Identities=11% Similarity=0.068 Sum_probs=66.6
Q ss_pred EEEeCchHHHHHHHHHHhcc-----CCceEEEecCCCCHHHHHHHHHHH---hcc---cccccccccccCCCCCcCCCCC
Q 028124 57 IVCCSSRDELDAVCSAVSNL-----ADISFSSLHSDLAETERTLILEEF---RHT---AMKWNQKVTEQSGDESETGKDE 125 (213)
Q Consensus 57 IIF~~~~~~~~~l~~~L~~~-----~~~~~~~lhg~~~~~~R~~~l~~F---r~g---~~~~~~~~~~~~~~~~~~~~~~ 125 (213)
+|=+++++.+-.+++.|... ..+...++|+..+...|..+-++. .+. +.-|.......-+ .+.+..
T Consensus 760 liR~anI~p~V~~A~~L~~~~~~~~~~i~~~~yHSr~~l~~Rs~~E~~Ld~~L~R~~~~~~~~~~~i~~~l---~~~~~~ 836 (1110)
T TIGR02562 760 LIRVANIDPLIRLAQFLYALLAEEKYQIHLCCYHAQDPLLLRSYIERRLDQLLTRHKPEQLFQDDEIIDLM---QNSPAL 836 (1110)
T ss_pred EEEEcCchHHHHHHHHHHhhccccCCceeEEEecccChHHHHHHHHHHHHHHhcccChhhhhchHHHHHHH---hccccc
Confidence 55567788888888888654 125578899999888776655543 111 1111111111000 011223
Q ss_pred CceeEEEEeCCCCCcCcCCCCCCCCCEEEEecCCCChHHHHHhhcccc
Q 028124 126 HKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCL 173 (213)
Q Consensus 126 ~~~~iLV~Td~~~~~~~rGld~~~v~~VI~yd~P~~~~~yi~R~GR~~ 173 (213)
+...++|+|.+ .+-|+|+. .+++|- -|.+.++.+||+||+.
T Consensus 837 ~~~~i~v~Tqv----~E~g~D~d-fd~~~~--~~~~~~sliQ~aGR~~ 877 (1110)
T TIGR02562 837 NHLFIVLATPV----EEVGRDHD-YDWAIA--DPSSMRSIIQLAGRVN 877 (1110)
T ss_pred CCCeEEEEeee----EEEEeccc-CCeeee--ccCcHHHHHHHhhccc
Confidence 45789999999 99999953 555443 4667999999999973
No 166
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=93.86 E-value=0.38 Score=45.42 Aligned_cols=93 Identities=14% Similarity=0.228 Sum_probs=63.1
Q ss_pred HHHHHHHHHHhhc-CCCCCCcEEEEeCchHHHHHHHHHHhccC----CceEEEecCCCCHHHHHHHHHHHhccccccccc
Q 028124 36 METLVELLHLVVA-GRRPGLPMIVCCSSRDELDAVCSAVSNLA----DISFSSLHSDLAETERTLILEEFRHTAMKWNQK 110 (213)
Q Consensus 36 ~~~L~~ll~~~~~-~~~~~~~~IIF~~~~~~~~~l~~~L~~~~----~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~~~~~ 110 (213)
+.++.-+|+.+.. ......++||.++|+.-|..+++.+...+ .+.+..++|+++...+...+ +.|
T Consensus 81 ~Af~lP~l~~l~~~~~~~~~~aLil~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l---~~~------- 150 (513)
T COG0513 81 AAFLLPLLQKILKSVERKYVSALILAPTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEAL---KRG------- 150 (513)
T ss_pred HHHHHHHHHHHhcccccCCCceEEECCCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHH---hcC-------
Confidence 4445556665431 11222229999999999999998887542 36789999999877766444 445
Q ss_pred ccccCCCCCcCCCCCCceeEEEEeCCCC-CcCcCC-CCCCCCCEEEE
Q 028124 111 VTEQSGDESETGKDEHKSHMIVVTDACL-PLLSSG-ESAISARVLIN 155 (213)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~iLV~Td~~~-~~~~rG-ld~~~v~~VI~ 155 (213)
.+|||+|+..+ -.+.+| +++..+.++|.
T Consensus 151 -----------------~~ivVaTPGRllD~i~~~~l~l~~v~~lVl 180 (513)
T COG0513 151 -----------------VDIVVATPGRLLDLIKRGKLDLSGVETLVL 180 (513)
T ss_pred -----------------CCEEEECccHHHHHHHcCCcchhhcCEEEe
Confidence 88999998410 013555 78888998885
No 167
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=93.49 E-value=0.37 Score=37.68 Aligned_cols=47 Identities=21% Similarity=0.287 Sum_probs=36.5
Q ss_pred CCHHHHHHHHHHHhcccccccccccccCCCCCcCCCCCCceeEEEEeCCCCCcCcCCCCCCC--CCEEEEecCCC
Q 028124 88 LAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAIS--ARVLINYELPT 160 (213)
Q Consensus 88 ~~~~~R~~~l~~Fr~g~~~~~~~~~~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~rGld~~~--v~~VI~yd~P~ 160 (213)
....+..+++++|+... ...+|+++.- +++|+|+++ ++.||...+|.
T Consensus 31 ~~~~~~~~~l~~f~~~~----------------------~~~iL~~~~~----~~EGiD~~g~~~r~vii~glPf 79 (141)
T smart00492 31 EDGKETGKLLEKYVEAC----------------------ENAILLATAR----FSEGVDFPGDYLRAVIIDGLPF 79 (141)
T ss_pred CChhHHHHHHHHHHHcC----------------------CCEEEEEccc----eecceecCCCCeeEEEEEecCC
Confidence 34446788999999852 2369999988 999999997 46788888774
No 168
>PRK10689 transcription-repair coupling factor; Provisional
Probab=93.28 E-value=0.28 Score=50.71 Aligned_cols=103 Identities=19% Similarity=0.063 Sum_probs=73.8
Q ss_pred EEEEecCcchHHHHHHHHHHHhhcCCCCCCcEEEEeCchHHHHHHHHHHhcc-C--CceEEEecCCCCHHHHHHHHHHHh
Q 028124 25 FYVAVDRLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNL-A--DISFSSLHSDLAETERTLILEEFR 101 (213)
Q Consensus 25 ~~~~~~~~~~K~~~L~~ll~~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~-~--~~~~~~lhg~~~~~~R~~~l~~Fr 101 (213)
..+..+...=|..+....+-... ..+.+++|-|+|+.-|..+++.+++. + .+.+..++|..+..++.+++++.+
T Consensus 624 ~Ll~a~TGsGKT~val~aa~~~~---~~g~qvlvLvPT~eLA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~ 700 (1147)
T PRK10689 624 RLVCGDVGFGKTEVAMRAAFLAV---ENHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAA 700 (1147)
T ss_pred EEEEcCCCcCHHHHHHHHHHHHH---HcCCeEEEEeCcHHHHHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHH
Confidence 34444444446654332221111 24689999999999999998888753 1 267888999999999999999998
Q ss_pred cccccccccccccCCCCCcCCCCCCceeEEEEeCCCCCcCcCCCCCCCCCEEEEe
Q 028124 102 HTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINY 156 (213)
Q Consensus 102 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~rGld~~~v~~VI~y 156 (213)
+|. .+|+|+|.. ++...+.+.++.++|--
T Consensus 701 ~g~-----------------------~dIVVgTp~---lL~~~v~~~~L~lLVID 729 (1147)
T PRK10689 701 EGK-----------------------IDILIGTHK---LLQSDVKWKDLGLLIVD 729 (1147)
T ss_pred hCC-----------------------CCEEEECHH---HHhCCCCHhhCCEEEEe
Confidence 874 899999975 15556777888887753
No 169
>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only]
Probab=93.23 E-value=0.53 Score=46.66 Aligned_cols=122 Identities=15% Similarity=0.126 Sum_probs=88.8
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhcc------C-----------CceEEEecCCCCHHHHHHHHHHHhccccccccccccc
Q 028124 52 PGLPMIVCCSSRDELDAVCSAVSNL------A-----------DISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQ 114 (213)
Q Consensus 52 ~~~~~IIF~~~~~~~~~l~~~L~~~------~-----------~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~~~~~~~~~ 114 (213)
.+.+.|||..+..+.+.|-+.|.++ | +..-.-+.|..+..+|.+++++|....
T Consensus 718 ~g~kil~fSq~l~~Ld~ieeil~krq~pc~~gdnG~~aqkW~~n~sy~rldG~t~a~~rekLinqfN~e~---------- 787 (1387)
T KOG1016|consen 718 IGEKILIFSQNLTALDMIEEILKKRQIPCKDGDNGCPAQKWEKNRSYLRLDGTTSAADREKLINQFNSEP---------- 787 (1387)
T ss_pred cCceEEEeecchhHHHHHHHHHhcccccCCCCCCCCchhhhhhccceecccCCcccchHHHHHHhccCCC----------
Confidence 4678999999999999998888765 1 133456778888899999999997753
Q ss_pred CCCCCcCCCCCCceeEEEEeCCCCCcCcCCCCCCCCCEEEEecCCCChHHHHHhhcc---cc-CCCCeEEEEEeCc--hh
Q 028124 115 SGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTT---CL-AADGSVINIVVGG--EV 188 (213)
Q Consensus 115 ~~~~~~~~~~~~~~~iLV~Td~~~~~~~rGld~~~v~~VI~yd~P~~~~~yi~R~GR---~~-~~~g~~i~~~~~~--e~ 188 (213)
+..--+|++|.+ ..-|+++-.++-+|.||.-|++..=.|-+-| .| -++..++-++... |.
T Consensus 788 ----------~lsWlfllstra----g~lGinLIsanr~~ifda~wnpchdaqavcRvyrYGQ~KpcfvYRlVmD~~lEk 853 (1387)
T KOG1016|consen 788 ----------GLSWLFLLSTRA----GSLGINLISANRCIIFDACWNPCHDAQAVCRVYRYGQQKPCFVYRLVMDNSLEK 853 (1387)
T ss_pred ----------Cceeeeeehhcc----ccccceeeccceEEEEEeecCccccchhhhhhhhhcCcCceeEEeehhhhhhHH
Confidence 111237788999 9999999999999999999988766664444 23 3457888888764 44
Q ss_pred HHHHHHHHH
Q 028124 189 VTLRSMEES 197 (213)
Q Consensus 189 ~~~~~le~~ 197 (213)
..+.+--..
T Consensus 854 kIydRQIsK 862 (1387)
T KOG1016|consen 854 KIYDRQISK 862 (1387)
T ss_pred HHHHHHHhh
Confidence 444444333
No 170
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=92.87 E-value=0.98 Score=44.89 Aligned_cols=100 Identities=14% Similarity=0.185 Sum_probs=72.3
Q ss_pred HHHHHHHHHHHhhcCCCCCCcEEEEeCchHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhccccccccccccc
Q 028124 35 KMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQ 114 (213)
Q Consensus 35 K~~~L~~ll~~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~~~~~~~~~ 114 (213)
+..++..|+..+ ..++.+-||+.|...++.+++..+..+ .++..++|.-+..+ ++.|.+
T Consensus 268 ~~tF~~~L~~~L----~~gknIcvfsSt~~~~~~v~~~~~~~~-~~Vl~l~s~~~~~d----v~~W~~------------ 326 (824)
T PF02399_consen 268 ETTFFSELLARL----NAGKNICVFSSTVSFAEIVARFCARFT-KKVLVLNSTDKLED----VESWKK------------ 326 (824)
T ss_pred hhhHHHHHHHHH----hCCCcEEEEeChHHHHHHHHHHHHhcC-CeEEEEcCCCCccc----cccccc------------
Confidence 455666666664 347788899999999999999998886 68888888655442 234443
Q ss_pred CCCCCcCCCCCCceeEEEEeCCCCCcCcCCCCCCCC--CEEEEe--cCC--CChHHHHHhhccc
Q 028124 115 SGDESETGKDEHKSHMIVVTDACLPLLSSGESAISA--RVLINY--ELP--TKKETYIRRMTTC 172 (213)
Q Consensus 115 ~~~~~~~~~~~~~~~iLV~Td~~~~~~~rGld~~~v--~~VI~y--d~P--~~~~~yi~R~GR~ 172 (213)
.++++-|.+ ..-|+++.+. +-|.-| ... .+..+..|.+||.
T Consensus 327 -------------~~VviYT~~----itvG~Sf~~~HF~~~f~yvk~~~~gpd~~s~~Q~lgRv 373 (824)
T PF02399_consen 327 -------------YDVVIYTPV----ITVGLSFEEKHFDSMFAYVKPMSYGPDMVSVYQMLGRV 373 (824)
T ss_pred -------------eeEEEEece----EEEEeccchhhceEEEEEecCCCCCCcHHHHHHHHHHH
Confidence 899999999 9999999754 334444 222 2455688999994
No 171
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=91.62 E-value=1 Score=43.76 Aligned_cols=80 Identities=19% Similarity=0.184 Sum_probs=66.6
Q ss_pred CCCCcEEEEeCchHHHHHHHH----HHhccCCceEEEecCCCCHHHHHHHHHHHhcccccccccccccCCCCCcCCCCCC
Q 028124 51 RPGLPMIVCCSSRDELDAVCS----AVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEH 126 (213)
Q Consensus 51 ~~~~~~IIF~~~~~~~~~l~~----~L~~~~~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~~~~~~~~~~~~~~~~~~~~~ 126 (213)
..+.|+..-++|---|+.-+. +|...+ +.+..+.|.+...+|.+++++..+|+
T Consensus 309 ~~G~Q~ALMAPTEILA~QH~~~~~~~l~~~~-i~V~lLtG~~kgk~r~~~l~~l~~G~---------------------- 365 (677)
T COG1200 309 EAGYQAALMAPTEILAEQHYESLRKWLEPLG-IRVALLTGSLKGKARKEILEQLASGE---------------------- 365 (677)
T ss_pred HcCCeeEEeccHHHHHHHHHHHHHHHhhhcC-CeEEEeecccchhHHHHHHHHHhCCC----------------------
Confidence 457899999998766665544 444456 89999999999999999999999996
Q ss_pred ceeEEEEeCCCCCcCcCCCCCCCCCEEEEec
Q 028124 127 KSHMIVVTDACLPLLSSGESAISARVLINYE 157 (213)
Q Consensus 127 ~~~iLV~Td~~~~~~~rGld~~~v~~VI~yd 157 (213)
++++|.|-+ +....+++.+.-+||--.
T Consensus 366 -~~ivVGTHA---LiQd~V~F~~LgLVIiDE 392 (677)
T COG1200 366 -IDIVVGTHA---LIQDKVEFHNLGLVIIDE 392 (677)
T ss_pred -CCEEEEcch---hhhcceeecceeEEEEec
Confidence 999999998 478889999998888644
No 172
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=91.29 E-value=2.9 Score=33.53 Aligned_cols=110 Identities=14% Similarity=0.147 Sum_probs=67.6
Q ss_pred eEEEEEecCcchHHHH-HHHHHHHhhcCC-CCCCcEEEEeCchHHHHHHHHHHhcc---CCceEEEecCCCCHHHHHHHH
Q 028124 23 RHFYVAVDRLQFKMET-LVELLHLVVAGR-RPGLPMIVCCSSRDELDAVCSAVSNL---ADISFSSLHSDLAETERTLIL 97 (213)
Q Consensus 23 ~~~~~~~~~~~~K~~~-L~~ll~~~~~~~-~~~~~~IIF~~~~~~~~~l~~~L~~~---~~~~~~~lhg~~~~~~R~~~l 97 (213)
++.++..+...-|... +..++..+.... ..+.++||.|+++.-+...++.+... .++.+..++|+.+..++...+
T Consensus 37 ~~~li~~~TG~GKT~~~~~~~l~~~~~~~~~~~~~viii~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (203)
T cd00268 37 RDVIGQAQTGSGKTAAFLIPILEKLDPSPKKDGPQALILAPTRELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKL 116 (203)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHhhcccCCceEEEEcCCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHh
Confidence 3455666555446544 444444433210 34678999999999988887766544 247888999998876654333
Q ss_pred HHHhcccccccccccccCCCCCcCCCCCCceeEEEEeCCCCCc-C-cCCCCCCCCCEEEEecCC
Q 028124 98 EEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPL-L-SSGESAISARVLINYELP 159 (213)
Q Consensus 98 ~~Fr~g~~~~~~~~~~~~~~~~~~~~~~~~~~iLV~Td~~~~~-~-~rGld~~~v~~VI~yd~P 159 (213)
.. ...++|+|...+.. + ..-.++.+++++|.-+..
T Consensus 117 ---~~------------------------~~~iiv~T~~~l~~~l~~~~~~~~~l~~lIvDE~h 153 (203)
T cd00268 117 ---KR------------------------GPHIVVATPGRLLDLLERGKLDLSKVKYLVLDEAD 153 (203)
T ss_pred ---cC------------------------CCCEEEEChHHHHHHHHcCCCChhhCCEEEEeChH
Confidence 22 27899999531100 1 223567788888765444
No 173
>PF10593 Z1: Z1 domain; InterPro: IPR018310 This entry represents the Z1 domain of unknown function that is found in a group of putative endonucleases. This domain is found associated with a helicase domain of superfamily type II [].
Probab=91.02 E-value=1.2 Score=37.89 Aligned_cols=55 Identities=11% Similarity=-0.069 Sum_probs=42.9
Q ss_pred ceeEEEEeCCCCCcCcCCCCCCCCCEEEEecCCCChHHHHHhhccc-cCCC---CeEEEEEeCc
Q 028124 127 KSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTC-LAAD---GSVINIVVGG 186 (213)
Q Consensus 127 ~~~iLV~Td~~~~~~~rGld~~~v~~VI~yd~P~~~~~yi~R~GR~-~~~~---g~~i~~~~~~ 186 (213)
...|+|.=+. ++||+.+.+..+.....-|.+.+++.|+ ||= |=++ ..|=.+.+++
T Consensus 135 ~~~I~VGGn~----LsRGlTleGL~vsYf~R~s~~~DTL~Qm-gRwFGYR~gY~dl~Ri~~~~~ 193 (239)
T PF10593_consen 135 LNVIAVGGNK----LSRGLTLEGLTVSYFLRNSKQYDTLMQM-GRWFGYRPGYEDLCRIYMPEE 193 (239)
T ss_pred ceEEEECCcc----ccCceeECCcEEEEecCCCchHHHHHHH-hhcccCCcccccceEEecCHH
Confidence 4789999999 9999999999999999999999999885 784 4343 3444444443
No 174
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=90.88 E-value=1 Score=41.60 Aligned_cols=106 Identities=20% Similarity=0.189 Sum_probs=68.1
Q ss_pred EEEEecCcchHHHH-HHHHHHHhhcCCCCCCcEEEEeCchHHHHHHHHHHhcc----CCceEEEecCCCCHHHHHHHHHH
Q 028124 25 FYVAVDRLQFKMET-LVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNL----ADISFSSLHSDLAETERTLILEE 99 (213)
Q Consensus 25 ~~~~~~~~~~K~~~-L~~ll~~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~----~~~~~~~lhg~~~~~~R~~~l~~ 99 (213)
.++..+...=|... +.-++..+.. .....+++|.|+|++-|..+++.++.. .++.+..++|+.+...+...+
T Consensus 44 vi~~a~TGsGKT~a~~lpil~~l~~-~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~l-- 120 (460)
T PRK11776 44 VIAQAKTGSGKTAAFGLGLLQKLDV-KRFRVQALVLCPTRELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDSL-- 120 (460)
T ss_pred EEEECCCCCcHHHHHHHHHHHHhhh-ccCCceEEEEeCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHHHh--
Confidence 45555554446543 3444444322 223457999999999999988877653 247899999999876654333
Q ss_pred HhcccccccccccccCCCCCcCCCCCCceeEEEEeCCCCCc-C-cCCCCCCCCCEEEEecC
Q 028124 100 FRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPL-L-SSGESAISARVLINYEL 158 (213)
Q Consensus 100 Fr~g~~~~~~~~~~~~~~~~~~~~~~~~~~iLV~Td~~~~~-~-~rGld~~~v~~VI~yd~ 158 (213)
+.+ .+|+|+|+-.+.. + ...+++.++++||.-+.
T Consensus 121 -~~~------------------------~~IvV~Tp~rl~~~l~~~~~~l~~l~~lViDEa 156 (460)
T PRK11776 121 -EHG------------------------AHIIVGTPGRILDHLRKGTLDLDALNTLVLDEA 156 (460)
T ss_pred -cCC------------------------CCEEEEChHHHHHHHHcCCccHHHCCEEEEECH
Confidence 343 7899999642110 2 24578889999886543
No 175
>PRK14701 reverse gyrase; Provisional
Probab=90.81 E-value=1.8 Score=46.44 Aligned_cols=63 Identities=16% Similarity=0.259 Sum_probs=54.0
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhccC-----CceEEEecCCCCHHHHHHHHHHHhcccccccccccccCCCCCcCCCCCC
Q 028124 52 PGLPMIVCCSSRDELDAVCSAVSNLA-----DISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEH 126 (213)
Q Consensus 52 ~~~~~IIF~~~~~~~~~l~~~L~~~~-----~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~~~~~~~~~~~~~~~~~~~~~ 126 (213)
++.+++|.++|+.-+..+++.|+..+ ++.+..+||+++..++.+.++++++|.
T Consensus 121 ~g~~aLVl~PTreLa~Qi~~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~---------------------- 178 (1638)
T PRK14701 121 KGKKCYIILPTTLLVKQTVEKIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGD---------------------- 178 (1638)
T ss_pred cCCeEEEEECHHHHHHHHHHHHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCC----------------------
Confidence 46789999999999999999887631 267889999999999999999999874
Q ss_pred ceeEEEEeCCC
Q 028124 127 KSHMIVVTDAC 137 (213)
Q Consensus 127 ~~~iLV~Td~~ 137 (213)
.+|||+|+..
T Consensus 179 -~dILV~TPgr 188 (1638)
T PRK14701 179 -FDILVTTAQF 188 (1638)
T ss_pred -CCEEEECCch
Confidence 8899999874
No 176
>KOG2340 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.35 E-value=1.7 Score=41.38 Aligned_cols=139 Identities=13% Similarity=0.150 Sum_probs=92.9
Q ss_pred chHHHHHHHHH-HHhhcCCCCCCcEEEEeCchHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhcccccccccc
Q 028124 33 QFKMETLVELL-HLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKV 111 (213)
Q Consensus 33 ~~K~~~L~~ll-~~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~~~~~~ 111 (213)
+.++..+..-+ -.+.. ....-++||.++--.--++-.++++.. +....+|--.++..-..+-+-|..|.
T Consensus 533 D~RFkyFv~~ImPq~~k--~t~s~~LiyIPSYfDFVRvRNy~K~e~-i~F~~i~EYssk~~vsRAR~lF~qgr------- 602 (698)
T KOG2340|consen 533 DARFKYFVDKIMPQLIK--RTESGILIYIPSYFDFVRVRNYMKKEE-ISFVMINEYSSKSKVSRARELFFQGR------- 602 (698)
T ss_pred hHHHHHHHHhhchhhcc--cccCceEEEecchhhHHHHHHHhhhhh-cchHHHhhhhhHhhhhHHHHHHHhcC-------
Confidence 34666655533 34322 235678999999999889999998876 67777776555555455566688874
Q ss_pred cccCCCCCcCCCCCCceeEEEEeCCCCCcCcCCCCCCCCCEEEEecCCCChHHH---HHhhccc--cCC-C---CeEEEE
Q 028124 112 TEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETY---IRRMTTC--LAA-D---GSVINI 182 (213)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~rGld~~~v~~VI~yd~P~~~~~y---i~R~GR~--~~~-~---g~~i~~ 182 (213)
.++|+-|+-. -.-|-.++.+|..||.|.+|.++.-| +..++|+ .|+ . -.|..+
T Consensus 603 ----------------~~vlLyTER~--hffrR~~ikGVk~vVfYqpP~~P~FYsEiinm~~k~~~~gn~d~d~~t~~il 664 (698)
T KOG2340|consen 603 ----------------KSVLLYTERA--HFFRRYHIKGVKNVVFYQPPNNPHFYSEIINMSDKTTSQGNTDLDIFTVRIL 664 (698)
T ss_pred ----------------ceEEEEehhh--hhhhhheecceeeEEEecCCCCcHHHHHHHhhhhhhhccCCccccceEEEEE
Confidence 8899998861 13466788999999999999998766 4555674 222 2 355556
Q ss_pred EeCchhHHHHHHHHHhcccc
Q 028124 183 VVGGEVVTLRSMEESLGLIV 202 (213)
Q Consensus 183 ~~~~e~~~~~~le~~l~~~~ 202 (213)
++..|.. .||...|.+.
T Consensus 665 ytKyD~i---~Le~ivGter 681 (698)
T KOG2340|consen 665 YTKYDRI---RLENIVGTER 681 (698)
T ss_pred eechhhH---HHHHhhhHHH
Confidence 6666654 4555555443
No 177
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=89.89 E-value=1.7 Score=42.17 Aligned_cols=104 Identities=14% Similarity=0.094 Sum_probs=65.0
Q ss_pred EEEEecCcchHHHHH-HHHHHHhhcCCCCCCcEEEEeCchHHHHHHHHHHhcc----CCceEEEecCCCCHHHHHHHHHH
Q 028124 25 FYVAVDRLQFKMETL-VELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNL----ADISFSSLHSDLAETERTLILEE 99 (213)
Q Consensus 25 ~~~~~~~~~~K~~~L-~~ll~~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~----~~~~~~~lhg~~~~~~R~~~l~~ 99 (213)
.++..+...=|..++ .-++..+.. .....++||.|+|+.-|..+++.+... .++.+..+||+.+.+.+...
T Consensus 46 vl~~ApTGsGKT~af~lpll~~l~~-~~~~~~~LIL~PTreLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~--- 121 (629)
T PRK11634 46 VLGMAQTGSGKTAAFSLPLLHNLDP-ELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRA--- 121 (629)
T ss_pred EEEEcCCCCcHHHHHHHHHHHHhhh-ccCCCeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHHH---
Confidence 444444444465543 334444322 234568999999999999888877543 24788999999876655433
Q ss_pred HhcccccccccccccCCCCCcCCCCCCceeEEEEeCCCCC-cCc-CCCCCCCCCEEEEe
Q 028124 100 FRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLP-LLS-SGESAISARVLINY 156 (213)
Q Consensus 100 Fr~g~~~~~~~~~~~~~~~~~~~~~~~~~~iLV~Td~~~~-~~~-rGld~~~v~~VI~y 156 (213)
++.+ .+|+|+|+..+- .+. ..+++.++.+||.-
T Consensus 122 l~~~------------------------~~IVVgTPgrl~d~l~r~~l~l~~l~~lVlD 156 (629)
T PRK11634 122 LRQG------------------------PQIVVGTPGRLLDHLKRGTLDLSKLSGLVLD 156 (629)
T ss_pred hcCC------------------------CCEEEECHHHHHHHHHcCCcchhhceEEEec
Confidence 3343 789999963110 023 34678888887753
No 178
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=89.13 E-value=0.86 Score=43.55 Aligned_cols=44 Identities=18% Similarity=0.312 Sum_probs=39.4
Q ss_pred EEEEeCchHHHHHHHHHHhcc---CCceEEEecCCCCHHHHHHHHHH
Q 028124 56 MIVCCSSRDELDAVCSAVSNL---ADISFSSLHSDLAETERTLILEE 99 (213)
Q Consensus 56 ~IIF~~~~~~~~~l~~~L~~~---~~~~~~~lhg~~~~~~R~~~l~~ 99 (213)
.+||++|+.-|..+.+.|... .++++..+.|||+...+++++++
T Consensus 266 ~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqKQqRlL~~ 312 (731)
T KOG0347|consen 266 ALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQKQQRLLNQ 312 (731)
T ss_pred eEEecChHHHHHHHHHHHHHhccccCeEEEEeechhHHHHHHHHHhc
Confidence 899999999999999998643 44999999999999999999988
No 179
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=89.12 E-value=2.9 Score=43.53 Aligned_cols=85 Identities=14% Similarity=0.162 Sum_probs=59.9
Q ss_pred EEEecCcchHHHHHHHHHHHhhcCCCCCCcEEEEeCchHHHHHHHHHHhccC---Cce---EEEecCCCCHHHHHHHHHH
Q 028124 26 YVAVDRLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLA---DIS---FSSLHSDLAETERTLILEE 99 (213)
Q Consensus 26 ~~~~~~~~~K~~~L~~ll~~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~---~~~---~~~lhg~~~~~~R~~~l~~ 99 (213)
.+..+...=|..+..-++..+. ..+.+++|.++|+.-|..+++.++... ++. +..+||+++..+|...+++
T Consensus 97 vi~ApTGsGKT~f~l~~~~~l~---~~g~~vLIL~PTreLa~Qi~~~l~~l~~~~~i~~~~i~~~~Gg~~~~e~~~~~~~ 173 (1171)
T TIGR01054 97 AIIAPTGVGKTTFGLAMSLFLA---KKGKRCYIILPTTLLVIQVAEKISSLAEKAGVGTVNIGAYHSRLPTKEKKEFMER 173 (1171)
T ss_pred EEECCCCCCHHHHHHHHHHHHH---hcCCeEEEEeCHHHHHHHHHHHHHHHHHhcCCceeeeeeecCCCCHHHHHHHHHH
Confidence 3444444446654433333222 246799999999999999988887642 133 3358999999999999999
Q ss_pred HhcccccccccccccCCCCCcCCCCCCceeEEEEeCC
Q 028124 100 FRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDA 136 (213)
Q Consensus 100 Fr~g~~~~~~~~~~~~~~~~~~~~~~~~~~iLV~Td~ 136 (213)
++++. .+|||+|+.
T Consensus 174 l~~~~-----------------------~dIlV~Tp~ 187 (1171)
T TIGR01054 174 IENGD-----------------------FDILITTTM 187 (1171)
T ss_pred HhcCC-----------------------CCEEEECHH
Confidence 98874 789999986
No 180
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=89.00 E-value=2.5 Score=43.53 Aligned_cols=78 Identities=15% Similarity=0.111 Sum_probs=68.3
Q ss_pred CCCCcEEEEeCchHHHHHHHHHHhcc----CCceEEEecCCCCHHHHHHHHHHHhcccccccccccccCCCCCcCCCCCC
Q 028124 51 RPGLPMIVCCSSRDELDAVCSAVSNL----ADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEH 126 (213)
Q Consensus 51 ~~~~~~IIF~~~~~~~~~l~~~L~~~----~~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~~~~~~~~~~~~~~~~~~~~~ 126 (213)
.+++|+.|.|+|.--|+.-++-++.+ | +++..+.+-.+.++...+++..++|.
T Consensus 641 ~~GKQVAvLVPTTlLA~QHy~tFkeRF~~fP-V~I~~LSRF~s~kE~~~il~~la~G~---------------------- 697 (1139)
T COG1197 641 MDGKQVAVLVPTTLLAQQHYETFKERFAGFP-VRIEVLSRFRSAKEQKEILKGLAEGK---------------------- 697 (1139)
T ss_pred cCCCeEEEEcccHHhHHHHHHHHHHHhcCCC-eeEEEecccCCHHHHHHHHHHHhcCC----------------------
Confidence 46799999999998888777777654 7 89999999999999999999999995
Q ss_pred ceeEEEEeCCCCCcCcCCCCCCCCCEEEE
Q 028124 127 KSHMIVVTDACLPLLSSGESAISARVLIN 155 (213)
Q Consensus 127 ~~~iLV~Td~~~~~~~rGld~~~v~~VI~ 155 (213)
++|+|.|-. +++.++-+.|...+|-
T Consensus 698 -vDIvIGTHr---LL~kdv~FkdLGLlII 722 (1139)
T COG1197 698 -VDIVIGTHR---LLSKDVKFKDLGLLII 722 (1139)
T ss_pred -ccEEEechH---hhCCCcEEecCCeEEE
Confidence 999999987 4788899999998885
No 181
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=88.90 E-value=0.98 Score=44.97 Aligned_cols=109 Identities=15% Similarity=0.189 Sum_probs=70.2
Q ss_pred CCCCCCCCCCCCCCCCCceEEEEEecCcchHHHHHHHHHHHhhcCCCCCCcEEEEeCchHHHHHHHHHHhccCCceEEEe
Q 028124 5 GVESPCPPCQSPSHFSQPRHFYVAVDRLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSL 84 (213)
Q Consensus 5 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~K~~~L~~ll~~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~l 84 (213)
+|..-..|+..|..+.+-.... ......|+..+.+-+... ...++|+||-+.+....+.+.+.|.+.+ +....|
T Consensus 386 ~l~vv~iPTnrp~~R~D~~D~v--y~t~~~K~~Aiv~~I~~~---~~~gqPvLvgT~sie~SE~ls~~L~~~~-i~h~VL 459 (822)
T COG0653 386 GLDVVVIPTNRPIIRLDEPDLV--YKTEEEKFKAIVEDIKER---HEKGQPVLVGTVSIEKSELLSKLLRKAG-IPHNVL 459 (822)
T ss_pred CCceeeccCCCcccCCCCcccc--ccchHHHHHHHHHHHHHH---HhcCCCEEEcCcceecchhHHHHHHhcC-CCceee
Confidence 3444344444444433322222 223344888888877653 2478999999999999999999999887 777777
Q ss_pred cCCCCHHHHHHHHHHHhcccccccccccccCCCCCcCCCCCCceeEEEEeCCCCCcCcCCCCCC
Q 028124 85 HSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAI 148 (213)
Q Consensus 85 hg~~~~~~R~~~l~~Fr~g~~~~~~~~~~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~rGld~~ 148 (213)
...-...+ .++.. + .|. +-.+-|+|.. ++||-|+.
T Consensus 460 NAk~h~~E-A~Iia-~-AG~----------------------~gaVTiATNM----AGRGTDIk 494 (822)
T COG0653 460 NAKNHARE-AEIIA-Q-AGQ----------------------PGAVTIATNM----AGRGTDIK 494 (822)
T ss_pred ccccHHHH-HHHHh-h-cCC----------------------CCcccccccc----ccCCcccc
Confidence 76543333 22222 1 221 3558899999 99999985
No 182
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=88.72 E-value=2.8 Score=38.94 Aligned_cols=60 Identities=12% Similarity=0.136 Sum_probs=52.9
Q ss_pred CCcEEEEeCchHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhcccccccccccccCCCCCcCCCCCCceeEEE
Q 028124 53 GLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIV 132 (213)
Q Consensus 53 ~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~~~~~~~~~~~~~~~~~~~~~~~~iLV 132 (213)
.+.+||.+++++-+......|...+ +.+..++++.+..++..++.+...+. .++++
T Consensus 51 ~~~~lVi~P~~~L~~dq~~~l~~~g-i~~~~l~~~~~~~~~~~i~~~~~~~~-----------------------~~il~ 106 (470)
T TIGR00614 51 DGITLVISPLISLMEDQVLQLKASG-IPATFLNSSQSKEQQKNVLTDLKDGK-----------------------IKLLY 106 (470)
T ss_pred CCcEEEEecHHHHHHHHHHHHHHcC-CcEEEEeCCCCHHHHHHHHHHHhcCC-----------------------CCEEE
Confidence 4689999999999998889998887 89999999999999999999998874 88888
Q ss_pred EeCC
Q 028124 133 VTDA 136 (213)
Q Consensus 133 ~Td~ 136 (213)
+|+-
T Consensus 107 ~TPe 110 (470)
T TIGR00614 107 VTPE 110 (470)
T ss_pred ECHH
Confidence 8875
No 183
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=87.49 E-value=13 Score=33.80 Aligned_cols=106 Identities=12% Similarity=0.147 Sum_probs=65.2
Q ss_pred EEEEecCcchHHHH-HHHHHHHhhc---CCCCCCcEEEEeCchHHHHHHHHHHhcc---CCceEEEecCCCCHHHHHHHH
Q 028124 25 FYVAVDRLQFKMET-LVELLHLVVA---GRRPGLPMIVCCSSRDELDAVCSAVSNL---ADISFSSLHSDLAETERTLIL 97 (213)
Q Consensus 25 ~~~~~~~~~~K~~~-L~~ll~~~~~---~~~~~~~~IIF~~~~~~~~~l~~~L~~~---~~~~~~~lhg~~~~~~R~~~l 97 (213)
.++..+...=|-.. +.-++..+.. ......++||.++|+.-+..+++.+... .++.+..++|+.+...+...+
T Consensus 41 ~l~~apTGsGKT~~~~lp~l~~l~~~~~~~~~~~~~lil~Pt~eLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l 120 (434)
T PRK11192 41 VLGSAPTGTGKTAAFLLPALQHLLDFPRRKSGPPRILILTPTRELAMQVADQARELAKHTHLDIATITGGVAYMNHAEVF 120 (434)
T ss_pred EEEECCCCChHHHHHHHHHHHHHhhccccCCCCceEEEECCcHHHHHHHHHHHHHHHccCCcEEEEEECCCCHHHHHHHh
Confidence 55555554435433 3333333221 0122468999999999988887766543 237899999999877665433
Q ss_pred HHHhcccccccccccccCCCCCcCCCCCCceeEEEEeCCCCC--cCcCCCCCCCCCEEEEec
Q 028124 98 EEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLP--LLSSGESAISARVLINYE 157 (213)
Q Consensus 98 ~~Fr~g~~~~~~~~~~~~~~~~~~~~~~~~~~iLV~Td~~~~--~~~rGld~~~v~~VI~yd 157 (213)
..+ .+|+|+|+..+- .....+++.++++||.-+
T Consensus 121 ---~~~------------------------~~IlV~Tp~rl~~~~~~~~~~~~~v~~lViDE 155 (434)
T PRK11192 121 ---SEN------------------------QDIVVATPGRLLQYIKEENFDCRAVETLILDE 155 (434)
T ss_pred ---cCC------------------------CCEEEEChHHHHHHHHcCCcCcccCCEEEEEC
Confidence 232 789999973100 023566788899888654
No 184
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=86.77 E-value=1.9 Score=40.96 Aligned_cols=76 Identities=12% Similarity=0.116 Sum_probs=54.7
Q ss_pred CCcEEEEeCchHHHHHHHHHHhccC---CceEEEecCCCCHHHHHHHHHHHhcccccccccccccCCCCCcCCCCCCcee
Q 028124 53 GLPMIVCCSSRDELDAVCSAVSNLA---DISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSH 129 (213)
Q Consensus 53 ~~~~IIF~~~~~~~~~l~~~L~~~~---~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (213)
+.=.+|.|+|+.-|..+...-++.+ ++.++++||+++..++.+-|+ .| ..
T Consensus 296 gPi~vilvPTrela~Qi~~eaKkf~K~ygl~~v~~ygGgsk~eQ~k~Lk---~g------------------------~E 348 (731)
T KOG0339|consen 296 GPIGVILVPTRELASQIFSEAKKFGKAYGLRVVAVYGGGSKWEQSKELK---EG------------------------AE 348 (731)
T ss_pred CCeEEEEeccHHHHHHHHHHHHHhhhhccceEEEeecCCcHHHHHHhhh---cC------------------------Ce
Confidence 3446788899999998877766541 389999999999999887766 44 77
Q ss_pred EEEEeCCCCCc--CcCCCCCCCCCEEEE
Q 028124 130 MIVVTDACLPL--LSSGESAISARVLIN 155 (213)
Q Consensus 130 iLV~Td~~~~~--~~rGld~~~v~~VI~ 155 (213)
++|||+-.|== --.+.|+..++++|.
T Consensus 349 ivVaTPgRlid~VkmKatn~~rvS~LV~ 376 (731)
T KOG0339|consen 349 IVVATPGRLIDMVKMKATNLSRVSYLVL 376 (731)
T ss_pred EEEechHHHHHHHHhhcccceeeeEEEE
Confidence 89999831000 135677777777664
No 185
>cd01524 RHOD_Pyr_redox Member of the Rhodanese Homology Domain superfamily. Included in this CD are the Lactococcus lactis NADH oxidase, Bacillus cereus NADH dehydrogenase, and Bacteroides thetaiotaomicron pyridine nucleotide-disulphide oxidoreductase, and similar rhodanese-like domains found C-terminal of the pyridine nucleotide-disulphide oxidoreductase (Pyr-redox) domain and the Pyr-redox dimerization domain.
Probab=86.43 E-value=2.7 Score=29.43 Aligned_cols=38 Identities=11% Similarity=0.061 Sum_probs=32.4
Q ss_pred CCCCcEEEEeCchHHHHHHHHHHhccCCceEEEecCCCC
Q 028124 51 RPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLA 89 (213)
Q Consensus 51 ~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~lhg~~~ 89 (213)
.+.+++++||++-..+...+..|+..|. .+..+.|+++
T Consensus 49 ~~~~~vvl~c~~g~~a~~~a~~L~~~G~-~v~~l~GG~~ 86 (90)
T cd01524 49 PKDKEIIVYCAVGLRGYIAARILTQNGF-KVKNLDGGYK 86 (90)
T ss_pred CCCCcEEEEcCCChhHHHHHHHHHHCCC-CEEEecCCHH
Confidence 3567999999988888889999999885 8999999974
No 186
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=86.18 E-value=5 Score=38.41 Aligned_cols=80 Identities=11% Similarity=0.056 Sum_probs=60.2
Q ss_pred CCcEEEEeCchHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhcccccccccccccCCCCCcCCCCCCceeEEE
Q 028124 53 GLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIV 132 (213)
Q Consensus 53 ~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~~~~~~~~~~~~~~~~~~~~~~~~iLV 132 (213)
.+.++|.+++++-+......|+..| +.+..+|++++..++..+++....+. .++|+
T Consensus 53 ~g~~lVisPl~sL~~dq~~~l~~~g-i~~~~~~s~~~~~~~~~~~~~l~~~~-----------------------~~il~ 108 (591)
T TIGR01389 53 KGLTVVISPLISLMKDQVDQLRAAG-VAAAYLNSTLSAKEQQDIEKALVNGE-----------------------LKLLY 108 (591)
T ss_pred CCcEEEEcCCHHHHHHHHHHHHHcC-CcEEEEeCCCCHHHHHHHHHHHhCCC-----------------------CCEEE
Confidence 4678999999999998888998887 89999999999999999999998874 88888
Q ss_pred EeCCCCC--cCcCCCCCCCCCEEEEe
Q 028124 133 VTDACLP--LLSSGESAISARVLINY 156 (213)
Q Consensus 133 ~Td~~~~--~~~rGld~~~v~~VI~y 156 (213)
+|+-.+- ...+-+...++++||--
T Consensus 109 ~tpe~l~~~~~~~~l~~~~l~~iViD 134 (591)
T TIGR01389 109 VAPERLEQDYFLNMLQRIPIALVAVD 134 (591)
T ss_pred EChhHhcChHHHHHHhcCCCCEEEEe
Confidence 8765210 01112334456666643
No 187
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=86.14 E-value=2.5 Score=33.01 Aligned_cols=47 Identities=17% Similarity=0.285 Sum_probs=31.2
Q ss_pred HHHHHHHHHhcccccccccccccCCCCCcCCCCCCceeEEEEeCCCCCcCcCCCCCCC--CCEEEEecCCC
Q 028124 92 ERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAIS--ARVLINYELPT 160 (213)
Q Consensus 92 ~R~~~l~~Fr~g~~~~~~~~~~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~rGld~~~--v~~VI~yd~P~ 160 (213)
+..+++++|+... ..+ -.+|+++.- -++++|+|+++ ++.||...+|-
T Consensus 32 ~~~~~l~~f~~~~------------------~~~--g~iL~~v~~--G~~~EGiD~~g~~~r~vii~glPf 80 (142)
T smart00491 32 ETEELLEKYSAAC------------------EAR--GALLLAVAR--GKVSEGIDFPDDLGRAVIIVGIPF 80 (142)
T ss_pred hHHHHHHHHHHhc------------------CCC--CEEEEEEeC--CeeecceecCCCccEEEEEEecCC
Confidence 4478899999852 000 146666541 01699999987 57898888774
No 188
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=85.84 E-value=7.9 Score=40.65 Aligned_cols=114 Identities=13% Similarity=0.219 Sum_probs=75.4
Q ss_pred CCCCcEEEEeCchHHHHHHHHHHhcc--C-------------------CceEEEecCCCCHHHHHHHHHHHhcccccccc
Q 028124 51 RPGLPMIVCCSSRDELDAVCSAVSNL--A-------------------DISFSSLHSDLAETERTLILEEFRHTAMKWNQ 109 (213)
Q Consensus 51 ~~~~~~IIF~~~~~~~~~l~~~L~~~--~-------------------~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~~~~ 109 (213)
.+.++.+||+++++.|..++..|-.. + .++...=|-+++..+..-+-.-|..|.
T Consensus 1357 ~~~k~~~vf~p~rk~~~~~a~~~~~~s~~~~~~~l~~~~e~~~~~l~e~l~~gvg~e~~s~~d~~iv~~l~e~g~----- 1431 (1674)
T KOG0951|consen 1357 GNRKPAIVFLPTRKHARLVAVDLVTFSHADEPDYLLSELEECDETLRESLKHGVGHEGLSSNDQEIVQQLFEAGA----- 1431 (1674)
T ss_pred cCCCCeEEEeccchhhhhhhhccchhhccCcHHHHHHHHhcchHhhhhcccccccccccCcchHHHHHHHHhcCc-----
Confidence 46789999999999998877655322 0 022222266777777666666677774
Q ss_pred cccccCCCCCcCCCCCCceeEEEEeCCCCCcCcCCCCCCCCCEEEE-----ec------CCCChHHHHHhhccccCCCCe
Q 028124 110 KVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLIN-----YE------LPTKKETYIRRMTTCLAADGS 178 (213)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~rGld~~~v~~VI~-----yd------~P~~~~~yi~R~GR~~~~~g~ 178 (213)
+.++|...-|+.. -. .+..||- || .+-......|.+|++.| -|.
T Consensus 1432 ------------------i~v~v~s~~~~~~-----~~-~~~lVvvmgt~~ydg~e~~~~~y~i~~ll~m~G~a~~-~~k 1486 (1674)
T KOG0951|consen 1432 ------------------IQVCVMSRDCYGT-----KL-KAHLVVVMGTQYYDGKEHSYEDYPIAELLQMVGLASG-AGK 1486 (1674)
T ss_pred ------------------EEEEEEEcccccc-----cc-cceEEEEecceeecccccccccCchhHHHHHhhhhcC-Ccc
Confidence 8888887666322 11 1333332 33 33458899999999876 788
Q ss_pred EEEEEeCchhHHHHHH
Q 028124 179 VINIVVGGEVVTLRSM 194 (213)
Q Consensus 179 ~i~~~~~~e~~~~~~l 194 (213)
|+.++......+++++
T Consensus 1487 ~vi~~~~~~k~yykkf 1502 (1674)
T KOG0951|consen 1487 CVIMCHTPKKEYYKKF 1502 (1674)
T ss_pred EEEEecCchHHHHHHh
Confidence 9999887777766654
No 189
>cd00158 RHOD Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.
Probab=85.75 E-value=1.7 Score=29.65 Aligned_cols=39 Identities=13% Similarity=0.279 Sum_probs=33.4
Q ss_pred CCCCcEEEEeCchHHHHHHHHHHhccCCceEEEecCCCC
Q 028124 51 RPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLA 89 (213)
Q Consensus 51 ~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~lhg~~~ 89 (213)
.+..++|++|+....+...+..|...|+..+..+.|++.
T Consensus 48 ~~~~~vv~~c~~~~~a~~~~~~l~~~G~~~v~~l~gG~~ 86 (89)
T cd00158 48 DKDKPIVVYCRSGNRSARAAKLLRKAGGTNVYNLEGGML 86 (89)
T ss_pred CCCCeEEEEeCCCchHHHHHHHHHHhCcccEEEecCChh
Confidence 467899999999899999999999988667888888864
No 190
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=85.08 E-value=1.5 Score=43.69 Aligned_cols=44 Identities=25% Similarity=0.305 Sum_probs=35.9
Q ss_pred eeEEEEeCCCCCcCcCCCCCCCCCEEE--------EecCCCChHHHHHhhccccCC
Q 028124 128 SHMIVVTDACLPLLSSGESAISARVLI--------NYELPTKKETYIRRMTTCLAA 175 (213)
Q Consensus 128 ~~iLV~Td~~~~~~~rGld~~~v~~VI--------~yd~P~~~~~yi~R~GR~~~~ 175 (213)
..|-|.+++ ++.||.++.=+-|+ -..+||+.+.-||+.||+.++
T Consensus 858 K~vAIISEA----aSSGiSLQsDrRv~NqRRRvHiTLELPWSADrAIQQFGRTHRS 909 (1300)
T KOG1513|consen 858 KLVAIISEA----ASSGISLQSDRRVQNQRRRVHITLELPWSADRAIQQFGRTHRS 909 (1300)
T ss_pred ceeeeeehh----hccCceeecchhhhhhhheEEEEEECCcchhHHHHHhcccccc
Confidence 667777888 99999987655554 478999999999999998544
No 191
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=84.95 E-value=2.3 Score=40.82 Aligned_cols=78 Identities=10% Similarity=0.123 Sum_probs=53.8
Q ss_pred CCcEEEEeCchHHHHHHHHHHhccC---CceEEEecCCCCHHHHHHHHHHHhcccccccccccccCCCCCcCCCCCCcee
Q 028124 53 GLPMIVCCSSRDELDAVCSAVSNLA---DISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSH 129 (213)
Q Consensus 53 ~~~~IIF~~~~~~~~~l~~~L~~~~---~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (213)
..++||.++|++-|..+++.+...+ .+.+..+||+.+...+...++ .+ .+
T Consensus 84 ~~raLIl~PTreLa~Qi~~~~~~l~~~~~i~v~~l~Gg~~~~~q~~~l~---~~------------------------~d 136 (572)
T PRK04537 84 DPRALILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQRELLQ---QG------------------------VD 136 (572)
T ss_pred CceEEEEeCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHHh---CC------------------------CC
Confidence 3689999999999998888776541 278899999988776654443 22 78
Q ss_pred EEEEeCCCCCc-CcC--CCCCCCCCEEEEec
Q 028124 130 MIVVTDACLPL-LSS--GESAISARVLINYE 157 (213)
Q Consensus 130 iLV~Td~~~~~-~~r--Gld~~~v~~VI~yd 157 (213)
|||+|.-.|-. +.+ .+++..+++||.-+
T Consensus 137 IiV~TP~rL~~~l~~~~~~~l~~v~~lViDE 167 (572)
T PRK04537 137 VIIATPGRLIDYVKQHKVVSLHACEICVLDE 167 (572)
T ss_pred EEEECHHHHHHHHHhccccchhheeeeEecC
Confidence 99999631100 222 36677788777543
No 192
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=84.94 E-value=4.4 Score=37.29 Aligned_cols=106 Identities=11% Similarity=0.130 Sum_probs=67.9
Q ss_pred HHHHHHHHHHhhcCCCCCCcEEEEeCchHHHHHHHHHHhccC---CceEEEecCCCCHHHHHHHHHHHhccccccccccc
Q 028124 36 METLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLA---DISFSSLHSDLAETERTLILEEFRHTAMKWNQKVT 112 (213)
Q Consensus 36 ~~~L~~ll~~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~---~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~~~~~~~ 112 (213)
...+.-+|..+.. ....-.++|.++|++-|..+++.+...| ++++..+-|+++ .+.+.+..++.
T Consensus 113 ~afaLPIl~~LL~-~p~~~~~lVLtPtRELA~QI~e~fe~Lg~~iglr~~~lvGG~~--m~~q~~~L~kk---------- 179 (476)
T KOG0330|consen 113 GAFALPILQRLLQ-EPKLFFALVLTPTRELAQQIAEQFEALGSGIGLRVAVLVGGMD--MMLQANQLSKK---------- 179 (476)
T ss_pred hhhHHHHHHHHHc-CCCCceEEEecCcHHHHHHHHHHHHHhccccCeEEEEEecCch--HHHHHHHhhcC----------
Confidence 3444445555544 3445789999999999999988887652 388999999985 44555666666
Q ss_pred ccCCCCCcCCCCCCceeEEEEeCCCCCc--C-cCCCCCCCCCE--------EEEecCCCChHHHHHhh
Q 028124 113 EQSGDESETGKDEHKSHMIVVTDACLPL--L-SSGESAISARV--------LINYELPTKKETYIRRM 169 (213)
Q Consensus 113 ~~~~~~~~~~~~~~~~~iLV~Td~~~~~--~-~rGld~~~v~~--------VI~yd~P~~~~~yi~R~ 169 (213)
.+|||||+-.|-. . .+|+.+..+.+ +.+.||-...+.++-++
T Consensus 180 ---------------PhilVaTPGrL~dhl~~Tkgf~le~lk~LVlDEADrlLd~dF~~~ld~ILk~i 232 (476)
T KOG0330|consen 180 ---------------PHILVATPGRLWDHLENTKGFSLEQLKFLVLDEADRLLDMDFEEELDYILKVI 232 (476)
T ss_pred ---------------CCEEEeCcHHHHHHHHhccCccHHHhHHHhhchHHhhhhhhhHHHHHHHHHhc
Confidence 6789999852110 0 56666654444 44555554444444433
No 193
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=84.11 E-value=0.23 Score=48.47 Aligned_cols=111 Identities=11% Similarity=0.069 Sum_probs=87.5
Q ss_pred cchHHHHHHHHHHHhhcCCCCCCcEEEEeCchHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhcccccccccc
Q 028124 32 LQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKV 111 (213)
Q Consensus 32 ~~~K~~~L~~ll~~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~~~~~~ 111 (213)
...|+..+..+|..... ... .++|||+.-..-++-+...|...+ +....+.|.|+...|.+.+..|..+.
T Consensus 520 ~s~ki~~~~~~l~~~~~-s~~-~kiiifsq~~~~l~l~~~~l~~~~-~~~~~~~g~~~~~~r~~s~~~~~~~~------- 589 (674)
T KOG1001|consen 520 ESSKIYAFLKILQAKEM-SEQ-PKIVIFSQLIWGLALVCLRLFFKG-FVFLRYDGEMLMKIRTKSFTDFPCDP------- 589 (674)
T ss_pred hhhhhHHHHHHHhhccC-CCC-CceeeehhHHHHHHHhhhhhhhcc-cccchhhhhhHHHHHHhhhcccccCc-------
Confidence 44588888888874333 222 499999999999999988888776 78888999999999999999998653
Q ss_pred cccCCCCCcCCCCCCcee-EEEEeCCCCCcCcCCCCCCCCCEEEEecCCCChHHHHHhhcc
Q 028124 112 TEQSGDESETGKDEHKSH-MIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTT 171 (213)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~-iLV~Td~~~~~~~rGld~~~v~~VI~yd~P~~~~~yi~R~GR 171 (213)
... .+++.-+ ..-|+++..+.+|+..|+=|++..--|-+-|
T Consensus 590 ---------------~~~vll~Slka----g~~glnlt~a~~v~~~d~~wnp~~eeQaidR 631 (674)
T KOG1001|consen 590 ---------------LVTALLMSLKA----GKVGLNLTAASHVLLMDPWWNPAVEEQAIDR 631 (674)
T ss_pred ---------------cHHHHHHHHHH----hhhhhchhhhhHHHhhchhcChHHHHHHHHH
Confidence 233 4556666 8999999999999999999988666554444
No 194
>cd01449 TST_Repeat_2 Thiosulfate sulfurtransferase (TST), C-terminal, catalytic domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the second repeat. Only the second repeat contains the catalytically active Cys residue.
Probab=83.95 E-value=3.1 Score=30.50 Aligned_cols=50 Identities=22% Similarity=0.211 Sum_probs=36.1
Q ss_pred HHHHHHHHHhhcCCCCCCcEEEEeCchHHHHHHHHHHhccCCceEEEecCCC
Q 028124 37 ETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDL 88 (213)
Q Consensus 37 ~~L~~ll~~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~lhg~~ 88 (213)
+.+..++..+- ..+.+++|+||++-..+...+..|+..|.-.+..+.|++
T Consensus 64 ~~~~~~~~~~~--~~~~~~iv~yc~~g~~s~~~~~~l~~~G~~~v~~l~GG~ 113 (118)
T cd01449 64 EELRALFAALG--ITPDKPVIVYCGSGVTACVLLLALELLGYKNVRLYDGSW 113 (118)
T ss_pred HHHHHHHHHcC--CCCCCCEEEECCcHHHHHHHHHHHHHcCCCCeeeeCChH
Confidence 34444554421 235789999999988889999999988843577888876
No 195
>cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily. Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine.
Probab=83.67 E-value=4.2 Score=28.46 Aligned_cols=38 Identities=16% Similarity=0.265 Sum_probs=32.5
Q ss_pred CCCCcEEEEeCchHHHHHHHHHHhccCCceEEEecCCC
Q 028124 51 RPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDL 88 (213)
Q Consensus 51 ~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~lhg~~ 88 (213)
.+..+++|+|++-..+...+..|...|.-.+..+.|++
T Consensus 54 ~~~~~ivv~c~~g~~s~~a~~~l~~~G~~~v~~l~gG~ 91 (96)
T cd01444 54 DRDRPVVVYCYHGNSSAQLAQALREAGFTDVRSLAGGF 91 (96)
T ss_pred CCCCCEEEEeCCCChHHHHHHHHHHcCCceEEEcCCCH
Confidence 35789999999999999999999999855677888886
No 196
>cd01529 4RHOD_Repeats Member of the Rhodanese Homology Domain superfamily. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. Only the second and most of the fourth repeats contain the putative catalytic Cys residue. This CD aligns the 1st , 2nd, 3rd, and 4th repeats.
Probab=83.39 E-value=2.7 Score=29.83 Aligned_cols=39 Identities=8% Similarity=0.080 Sum_probs=32.2
Q ss_pred CCCCcEEEEeCchHHHHHHHHHHhccCCceEEEecCCCC
Q 028124 51 RPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLA 89 (213)
Q Consensus 51 ~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~lhg~~~ 89 (213)
.+..++|+||++-..+...+..|+..|.-++..+.|++.
T Consensus 54 ~~~~~ivv~c~~g~~s~~~~~~l~~~G~~~v~~l~GG~~ 92 (96)
T cd01529 54 GRATRYVLTCDGSLLARFAAQELLALGGKPVALLDGGTS 92 (96)
T ss_pred CCCCCEEEEeCChHHHHHHHHHHHHcCCCCEEEeCCCHH
Confidence 456899999999888889999998888446888888873
No 197
>smart00450 RHOD Rhodanese Homology Domain. An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions.
Probab=83.37 E-value=2.2 Score=29.38 Aligned_cols=39 Identities=15% Similarity=0.195 Sum_probs=33.0
Q ss_pred CCCCcEEEEeCchHHHHHHHHHHhccCCceEEEecCCCC
Q 028124 51 RPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLA 89 (213)
Q Consensus 51 ~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~lhg~~~ 89 (213)
.+..++||||.+...+..++..|...|.-.+..+.|++.
T Consensus 54 ~~~~~iv~~c~~g~~a~~~~~~l~~~G~~~v~~l~GG~~ 92 (100)
T smart00450 54 DKDKPVVVYCRSGNRSAKAAWLLRELGFKNVYLLDGGYK 92 (100)
T ss_pred CCCCeEEEEeCCCcHHHHHHHHHHHcCCCceEEecCCHH
Confidence 567899999999999999999999988444888899873
No 198
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=82.43 E-value=5.3 Score=36.38 Aligned_cols=78 Identities=8% Similarity=0.014 Sum_probs=53.3
Q ss_pred CCcEEEEeCchHHHHHHHHHHhcc---CCceEEEecCCCCHHHHHHHHHHHhcccccccccccccCCCCCcCCCCCCcee
Q 028124 53 GLPMIVCCSSRDELDAVCSAVSNL---ADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSH 129 (213)
Q Consensus 53 ~~~~IIF~~~~~~~~~l~~~L~~~---~~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (213)
..++||.++|++-|..+++.+... -++.+..++|+.+...+.. .+..+ .+
T Consensus 83 ~~~~lil~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~---~l~~~------------------------~~ 135 (423)
T PRK04837 83 QPRALIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLK---VLESG------------------------VD 135 (423)
T ss_pred CceEEEECCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHH---HhcCC------------------------CC
Confidence 468999999999999887665432 2378899999877655433 33333 78
Q ss_pred EEEEeCCCCCc--CcCCCCCCCCCEEEEec
Q 028124 130 MIVVTDACLPL--LSSGESAISARVLINYE 157 (213)
Q Consensus 130 iLV~Td~~~~~--~~rGld~~~v~~VI~yd 157 (213)
|+|+|+..+-. ....+++.++.++|.-+
T Consensus 136 IlV~TP~~l~~~l~~~~~~l~~v~~lViDE 165 (423)
T PRK04837 136 ILIGTTGRLIDYAKQNHINLGAIQVVVLDE 165 (423)
T ss_pred EEEECHHHHHHHHHcCCcccccccEEEEec
Confidence 99999842100 13456788888888644
No 199
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=82.02 E-value=2.1 Score=30.53 Aligned_cols=37 Identities=11% Similarity=0.183 Sum_probs=31.9
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhccCCceEEEecCCCC
Q 028124 52 PGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLA 89 (213)
Q Consensus 52 ~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~lhg~~~ 89 (213)
+.++++++|.+-..+...+..|...| +.+..+.|++.
T Consensus 60 ~~~~ivv~C~~G~rs~~aa~~L~~~G-~~~~~l~GG~~ 96 (100)
T cd01523 60 DDQEVTVICAKEGSSQFVAELLAERG-YDVDYLAGGMK 96 (100)
T ss_pred CCCeEEEEcCCCCcHHHHHHHHHHcC-ceeEEeCCcHH
Confidence 56799999999888899999999998 67888889874
No 200
>PTZ00110 helicase; Provisional
Probab=81.56 E-value=8.3 Score=36.72 Aligned_cols=78 Identities=13% Similarity=0.169 Sum_probs=53.1
Q ss_pred CCcEEEEeCchHHHHHHHHHHhccC---CceEEEecCCCCHHHHHHHHHHHhcccccccccccccCCCCCcCCCCCCcee
Q 028124 53 GLPMIVCCSSRDELDAVCSAVSNLA---DISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSH 129 (213)
Q Consensus 53 ~~~~IIF~~~~~~~~~l~~~L~~~~---~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (213)
+..+||.++|++-|..+.+.+...+ .+.+..++|+.+..... ..++.+ .+
T Consensus 203 gp~~LIL~PTreLa~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~q~---~~l~~~------------------------~~ 255 (545)
T PTZ00110 203 GPIVLVLAPTRELAEQIREQCNKFGASSKIRNTVAYGGVPKRGQI---YALRRG------------------------VE 255 (545)
T ss_pred CcEEEEECChHHHHHHHHHHHHHHhcccCccEEEEeCCCCHHHHH---HHHHcC------------------------CC
Confidence 4579999999999999888887652 26788889988765543 334454 78
Q ss_pred EEEEeCCCCC-cCcC-CCCCCCCCEEEEec
Q 028124 130 MIVVTDACLP-LLSS-GESAISARVLINYE 157 (213)
Q Consensus 130 iLV~Td~~~~-~~~r-Gld~~~v~~VI~yd 157 (213)
|||+|+..+- .+.+ -+++..+++||.-+
T Consensus 256 IlVaTPgrL~d~l~~~~~~l~~v~~lViDE 285 (545)
T PTZ00110 256 ILIACPGRLIDFLESNVTNLRRVTYLVLDE 285 (545)
T ss_pred EEEECHHHHHHHHHcCCCChhhCcEEEeeh
Confidence 9999962100 0333 35677888877644
No 201
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=81.25 E-value=6 Score=36.55 Aligned_cols=77 Identities=12% Similarity=0.142 Sum_probs=53.8
Q ss_pred CcEEEEeCchHHHHHHHHHHhcc---CCceEEEecCCCCHHHHHHHHHHHhcccccccccccccCCCCCcCCCCCCceeE
Q 028124 54 LPMIVCCSSRDELDAVCSAVSNL---ADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHM 130 (213)
Q Consensus 54 ~~~IIF~~~~~~~~~l~~~L~~~---~~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~~~~~~~~~~~~~~~~~~~~~~~~i 130 (213)
.++||.|+|+.-|..+.+.+... -.+.+..++|+.+..++.. .++. ..+|
T Consensus 76 ~~aLil~PtreLa~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~---~l~~------------------------~~~I 128 (456)
T PRK10590 76 VRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM---KLRG------------------------GVDV 128 (456)
T ss_pred ceEEEEeCcHHHHHHHHHHHHHHhccCCCEEEEEECCcCHHHHHH---HHcC------------------------CCcE
Confidence 37999999999999888877653 1267888999988665432 3333 2789
Q ss_pred EEEeCCCCCc--CcCCCCCCCCCEEEEec
Q 028124 131 IVVTDACLPL--LSSGESAISARVLINYE 157 (213)
Q Consensus 131 LV~Td~~~~~--~~rGld~~~v~~VI~yd 157 (213)
+|+|+-.+-. ....+++..+++||.-+
T Consensus 129 iV~TP~rL~~~~~~~~~~l~~v~~lViDE 157 (456)
T PRK10590 129 LVATPGRLLDLEHQNAVKLDQVEILVLDE 157 (456)
T ss_pred EEEChHHHHHHHHcCCcccccceEEEeec
Confidence 9999732100 24556788898888644
No 202
>cd01519 RHOD_HSP67B2 Member of the Rhodanese Homology Domain superfamily. This CD includes the heat shock protein 67B2 of Drosophila melanogaster and other similar proteins, many of which are uncharacterized.
Probab=80.90 E-value=3.2 Score=29.75 Aligned_cols=38 Identities=11% Similarity=0.115 Sum_probs=31.4
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhccCCceEEEecCCCC
Q 028124 52 PGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLA 89 (213)
Q Consensus 52 ~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~lhg~~~ 89 (213)
+.+++|+||++-..+...+..|...|.-.+..+.|++.
T Consensus 65 ~~~~ivv~c~~g~~s~~~~~~l~~~G~~~v~~~~Gg~~ 102 (106)
T cd01519 65 KDKELIFYCKAGVRSKAAAELARSLGYENVGNYPGSWL 102 (106)
T ss_pred CCCeEEEECCCcHHHHHHHHHHHHcCCccceecCCcHH
Confidence 46899999999888899999999888445777888763
No 203
>cd01527 RHOD_YgaP Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YgaP, and similar uncharacterized putative rhodanese-related sulfurtransferases.
Probab=80.28 E-value=3.2 Score=29.46 Aligned_cols=38 Identities=13% Similarity=0.110 Sum_probs=31.6
Q ss_pred CCCCcEEEEeCchHHHHHHHHHHhccCCceEEEecCCC
Q 028124 51 RPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDL 88 (213)
Q Consensus 51 ~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~lhg~~ 88 (213)
.+.++++++|++-..+...+..|.+.|...+..+.|++
T Consensus 52 ~~~~~iv~~c~~g~~s~~~~~~L~~~g~~~v~~l~gG~ 89 (99)
T cd01527 52 VGANAIIFHCRSGMRTQQNAERLAAISAGEAYVLEGGL 89 (99)
T ss_pred CCCCcEEEEeCCCchHHHHHHHHHHcCCccEEEeeCCH
Confidence 45689999999988888999999888744677799986
No 204
>PRK09401 reverse gyrase; Reviewed
Probab=80.09 E-value=8.2 Score=40.35 Aligned_cols=106 Identities=14% Similarity=0.109 Sum_probs=65.8
Q ss_pred EEEEecCcchHHHHHHHHHHHhhcCCCCCCcEEEEeCchHHHHHHHHHHhccC---CceEE--EecCCCCHHHHHHHHHH
Q 028124 25 FYVAVDRLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLA---DISFS--SLHSDLAETERTLILEE 99 (213)
Q Consensus 25 ~~~~~~~~~~K~~~L~~ll~~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~---~~~~~--~lhg~~~~~~R~~~l~~ 99 (213)
+.+..+...=|..++.-++..+ . ..+.+++|.++|+.-+..+++.++..+ ++.+. ..|++++..++.+..+.
T Consensus 98 v~i~ApTGsGKT~f~l~~~~~l-~--~~g~~alIL~PTreLa~Qi~~~l~~l~~~~~~~~~~~~g~~~~~~~ek~~~~~~ 174 (1176)
T PRK09401 98 FAIIAPTGVGKTTFGLVMSLYL-A--KKGKKSYIIFPTRLLVEQVVEKLEKFGEKVGCGVKILYYHSSLKKKEKEEFLER 174 (1176)
T ss_pred EEEEcCCCCCHHHHHHHHHHHH-H--hcCCeEEEEeccHHHHHHHHHHHHHHhhhcCceEEEEEccCCcchhHHHHHHHH
Confidence 3444454444665433322222 1 246899999999999999999987653 13333 34556677888888888
Q ss_pred HhcccccccccccccCCCCCcCCCCCCceeEEEEeCCCCCcCcCCCCCCCCCEEEEe
Q 028124 100 FRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINY 156 (213)
Q Consensus 100 Fr~g~~~~~~~~~~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~rGld~~~v~~VI~y 156 (213)
+..+. .+|+|+|...+...-..+....++++|--
T Consensus 175 l~~~~-----------------------~~IlV~Tp~rL~~~~~~l~~~~~~~lVvD 208 (1176)
T PRK09401 175 LKEGD-----------------------FDILVTTSQFLSKNFDELPKKKFDFVFVD 208 (1176)
T ss_pred HhcCC-----------------------CCEEEECHHHHHHHHHhccccccCEEEEE
Confidence 88864 89999997421111123444446666643
No 205
>cd01532 4RHOD_Repeat_1 Member of the Rhodanese Homology Domain superfamily, repeat 1. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 1st repeat which does not contain the putative catalytic Cys residue.
Probab=79.99 E-value=3.2 Score=29.33 Aligned_cols=38 Identities=18% Similarity=0.234 Sum_probs=29.8
Q ss_pred CCCcEEEEeCc--hHHHHHHHHHHhccCCceEEEecCCCC
Q 028124 52 PGLPMIVCCSS--RDELDAVCSAVSNLADISFSSLHSDLA 89 (213)
Q Consensus 52 ~~~~~IIF~~~--~~~~~~l~~~L~~~~~~~~~~lhg~~~ 89 (213)
+..++++||.+ +..+...+..|...|.-.+..+.|++.
T Consensus 49 ~~~~ivl~c~~G~~~~s~~aa~~L~~~G~~~v~~l~GG~~ 88 (92)
T cd01532 49 RDTPIVVYGEGGGEDLAPRAARRLSELGYTDVALLEGGLQ 88 (92)
T ss_pred CCCeEEEEeCCCCchHHHHHHHHHHHcCccCEEEccCCHH
Confidence 36789999998 444678888998888556888888873
No 206
>cd01528 RHOD_2 Member of the Rhodanese Homology Domain superfamily, subgroup 2. Subgroup 2 includes uncharacterized putative rhodanese-related domains.
Probab=79.59 E-value=3.4 Score=29.56 Aligned_cols=38 Identities=13% Similarity=0.161 Sum_probs=31.8
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhccCCceEEEecCCCC
Q 028124 52 PGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLA 89 (213)
Q Consensus 52 ~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~lhg~~~ 89 (213)
+..++++||++-..+...+..|...|.-.+..+.|++.
T Consensus 57 ~~~~vv~~c~~g~rs~~~~~~l~~~G~~~v~~l~GG~~ 94 (101)
T cd01528 57 PDKDIVVLCHHGGRSMQVAQWLLRQGFENVYNLQGGID 94 (101)
T ss_pred CCCeEEEEeCCCchHHHHHHHHHHcCCccEEEecCCHH
Confidence 46799999999888899999998888445788999864
No 207
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=79.32 E-value=13 Score=35.79 Aligned_cols=51 Identities=8% Similarity=0.053 Sum_probs=45.2
Q ss_pred CCcEEEEeCchHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhccc
Q 028124 53 GLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTA 104 (213)
Q Consensus 53 ~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~lhg~~~~~~R~~~l~~Fr~g~ 104 (213)
.+.+||.+++++-+......|+..| +.+..+++..+.+++..+++..+.|.
T Consensus 65 ~g~tlVisPl~sL~~dqv~~l~~~g-i~~~~~~s~~~~~~~~~~~~~~~~g~ 115 (607)
T PRK11057 65 DGLTLVVSPLISLMKDQVDQLLANG-VAAACLNSTQTREQQLEVMAGCRTGQ 115 (607)
T ss_pred CCCEEEEecHHHHHHHHHHHHHHcC-CcEEEEcCCCCHHHHHHHHHHHhCCC
Confidence 3579999999999999999998887 89999999999999998999888874
No 208
>cd01533 4RHOD_Repeat_2 Member of the Rhodanese Homology Domain superfamily, repeat 2. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 2nd repeat which does contain the putative catalytic Cys residue.
Probab=78.49 E-value=6.5 Score=28.53 Aligned_cols=38 Identities=18% Similarity=0.298 Sum_probs=30.6
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhccCCce-EEEecCCCC
Q 028124 52 PGLPMIVCCSSRDELDAVCSAVSNLADIS-FSSLHSDLA 89 (213)
Q Consensus 52 ~~~~~IIF~~~~~~~~~l~~~L~~~~~~~-~~~lhg~~~ 89 (213)
+..+++|||.+-..+...+..|...|.-. +..+.|+++
T Consensus 65 ~~~~ivv~C~~G~rs~~a~~~L~~~G~~~~v~~l~gG~~ 103 (109)
T cd01533 65 PRTPIVVNCAGRTRSIIGAQSLINAGLPNPVAALRNGTQ 103 (109)
T ss_pred CCCeEEEECCCCchHHHHHHHHHHCCCCcceeEecCCHH
Confidence 45789999998888888889998888324 788999974
No 209
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=78.43 E-value=11 Score=37.33 Aligned_cols=102 Identities=16% Similarity=0.136 Sum_probs=64.0
Q ss_pred EEEEecCcchHH-HHHHHHHHHhhcCCCCCCcEEEEeCchHHHHHHHHHHhccC--CceEEEecCCCCHHHHHHHHHHHh
Q 028124 25 FYVAVDRLQFKM-ETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLA--DISFSSLHSDLAETERTLILEEFR 101 (213)
Q Consensus 25 ~~~~~~~~~~K~-~~L~~ll~~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~--~~~~~~lhg~~~~~~R~~~l~~Fr 101 (213)
..+..+...=|- ..+.-+|+.+.. .+..++|+.++|++-+......|+..+ ++++..++|+.+.++|. ..+
T Consensus 54 vvv~apTGSGKTla~~LPiL~~l~~--~~~~~aL~l~PtraLa~q~~~~l~~l~~~~i~v~~~~Gdt~~~~r~----~i~ 127 (742)
T TIGR03817 54 VVVATGTASGKSLAYQLPVLSALAD--DPRATALYLAPTKALAADQLRAVRELTLRGVRPATYDGDTPTEERR----WAR 127 (742)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHhh--CCCcEEEEEcChHHHHHHHHHHHHHhccCCeEEEEEeCCCCHHHHH----HHh
Confidence 444444332233 333344444322 345789999999999999988887652 37888999999877663 233
Q ss_pred cccccccccccccCCCCCcCCCCCCceeEEEEeCCCCCcCcCC---------CCCCCCCEEEEecCC
Q 028124 102 HTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSG---------ESAISARVLINYELP 159 (213)
Q Consensus 102 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~rG---------ld~~~v~~VI~yd~P 159 (213)
.+ .+++|+|+-. +..+ ..+.++++||--+..
T Consensus 128 ~~------------------------~~IivtTPd~---L~~~~L~~~~~~~~~l~~l~~vViDEah 167 (742)
T TIGR03817 128 EH------------------------ARYVLTNPDM---LHRGILPSHARWARFLRRLRYVVIDECH 167 (742)
T ss_pred cC------------------------CCEEEEChHH---HHHhhccchhHHHHHHhcCCEEEEeChh
Confidence 32 6799999631 2111 126788888865433
No 210
>cd01448 TST_Repeat_1 Thiosulfate sulfurtransferase (TST), N-terminal, inactive domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the 1st repeat, which does not contain the catalytically active Cys residue. The role of the 1st repeat is uncertain, but it is believed to be involved in protein interaction.
Probab=78.22 E-value=5.6 Score=29.38 Aligned_cols=39 Identities=8% Similarity=-0.047 Sum_probs=31.7
Q ss_pred CCCCcEEEEeCc-hHHHHHHHHHHhccCCceEEEecCCCC
Q 028124 51 RPGLPMIVCCSS-RDELDAVCSAVSNLADISFSSLHSDLA 89 (213)
Q Consensus 51 ~~~~~~IIF~~~-~~~~~~l~~~L~~~~~~~~~~lhg~~~ 89 (213)
.+.+++|+||++ -..+...+..|+..|.-.+..+.|++.
T Consensus 77 ~~~~~vv~~c~~g~~~a~~~~~~l~~~G~~~v~~l~GG~~ 116 (122)
T cd01448 77 SNDDTVVVYDDGGGFFAARAWWTLRYFGHENVRVLDGGLQ 116 (122)
T ss_pred CCCCEEEEECCCCCccHHHHHHHHHHcCCCCEEEecCCHH
Confidence 467899999999 578888889998888545888888873
No 211
>cd01520 RHOD_YbbB Member of the Rhodanese Homology Domain superfamily. This CD includes several putative ATP /GTP binding proteins including E. coli YbbB.
Probab=77.92 E-value=5.8 Score=29.93 Aligned_cols=38 Identities=11% Similarity=0.237 Sum_probs=30.8
Q ss_pred CCCCcEEEEeC-chHHHHHHHHHHhccCCceEEEecCCCC
Q 028124 51 RPGLPMIVCCS-SRDELDAVCSAVSNLADISFSSLHSDLA 89 (213)
Q Consensus 51 ~~~~~~IIF~~-~~~~~~~l~~~L~~~~~~~~~~lhg~~~ 89 (213)
.+..++||||+ +-..+...+..|+..| +.+..+.|+++
T Consensus 84 ~~~~~vvvyC~~~G~rs~~a~~~L~~~G-~~v~~L~GG~~ 122 (128)
T cd01520 84 ERDPKLLIYCARGGMRSQSLAWLLESLG-IDVPLLEGGYK 122 (128)
T ss_pred CCCCeEEEEeCCCCccHHHHHHHHHHcC-CceeEeCCcHH
Confidence 46789999997 4567778888888888 58999999974
No 212
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=77.90 E-value=19 Score=33.44 Aligned_cols=79 Identities=9% Similarity=0.124 Sum_probs=53.1
Q ss_pred CCcEEEEeCchHHHHHHHHHHhcc---CCceEEEecCCCCHHHHHHHHHHHhcccccccccccccCCCCCcCCCCCCcee
Q 028124 53 GLPMIVCCSSRDELDAVCSAVSNL---ADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSH 129 (213)
Q Consensus 53 ~~~~IIF~~~~~~~~~l~~~L~~~---~~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (213)
..++||.++|++-+..+++.++.. -++.+..++|+.+...+. +++..+ ..+
T Consensus 162 ~~~aLil~PtreLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~---~~~~~~-----------------------~~~ 215 (475)
T PRK01297 162 EPRALIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQL---KQLEAR-----------------------FCD 215 (475)
T ss_pred CceEEEEeCcHHHHHHHHHHHHHhhccCCCEEEEEEccCChHHHH---HHHhCC-----------------------CCC
Confidence 468999999999999888877643 137888999987655443 344443 378
Q ss_pred EEEEeCCCCC-cC-cCCCCCCCCCEEEEec
Q 028124 130 MIVVTDACLP-LL-SSGESAISARVLINYE 157 (213)
Q Consensus 130 iLV~Td~~~~-~~-~rGld~~~v~~VI~yd 157 (213)
|+|+|+-.+- .. ...+.+..+++||.-+
T Consensus 216 Iiv~TP~~Ll~~~~~~~~~l~~l~~lViDE 245 (475)
T PRK01297 216 ILVATPGRLLDFNQRGEVHLDMVEVMVLDE 245 (475)
T ss_pred EEEECHHHHHHHHHcCCcccccCceEEech
Confidence 9999984210 01 2245667788877644
No 213
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=77.86 E-value=15 Score=38.38 Aligned_cols=62 Identities=18% Similarity=0.123 Sum_probs=50.2
Q ss_pred CCcEEEEeCchHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhcccccccccccccCCCCCcCCCCCCceeEEE
Q 028124 53 GLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIV 132 (213)
Q Consensus 53 ~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~~~~~~~~~~~~~~~~~~~~~~~~iLV 132 (213)
.+.+||.+++++-+..-...|...+ +.+..+.|+++..++..+++++.... ++.++|+
T Consensus 500 ~GiTLVISPLiSLmqDQV~~L~~~G-I~Aa~L~s~~s~~eq~~ilr~l~s~~---------------------g~~~ILy 557 (1195)
T PLN03137 500 PGITLVISPLVSLIQDQIMNLLQAN-IPAASLSAGMEWAEQLEILQELSSEY---------------------SKYKLLY 557 (1195)
T ss_pred CCcEEEEeCHHHHHHHHHHHHHhCC-CeEEEEECCCCHHHHHHHHHHHHhcC---------------------CCCCEEE
Confidence 3679999999998876566666666 89999999999999999999987621 1488999
Q ss_pred EeCC
Q 028124 133 VTDA 136 (213)
Q Consensus 133 ~Td~ 136 (213)
+|+-
T Consensus 558 vTPE 561 (1195)
T PLN03137 558 VTPE 561 (1195)
T ss_pred EChH
Confidence 9985
No 214
>PRK13766 Hef nuclease; Provisional
Probab=77.55 E-value=77 Score=31.28 Aligned_cols=106 Identities=11% Similarity=0.127 Sum_probs=66.4
Q ss_pred EEEEecCcchHHHHHHHHHHHhhcCCCCCCcEEEEeCchHHHHHHHHHHhccCC---ceEEEecCCCCHHHHHHHHHHHh
Q 028124 25 FYVAVDRLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLAD---ISFSSLHSDLAETERTLILEEFR 101 (213)
Q Consensus 25 ~~~~~~~~~~K~~~L~~ll~~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~---~~~~~lhg~~~~~~R~~~l~~Fr 101 (213)
..+..+...=|.....-++..... .+++++||.|+++.-++..++.++.... ..+..++|+.+..+|..++ .
T Consensus 32 ~lv~~ptG~GKT~~a~~~i~~~l~--~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~r~~~~---~ 106 (773)
T PRK13766 32 TLVVLPTGLGKTAIALLVIAERLH--KKGGKVLILAPTKPLVEQHAEFFRKFLNIPEEKIVVFTGEVSPEKRAELW---E 106 (773)
T ss_pred eEEEcCCCccHHHHHHHHHHHHHH--hCCCeEEEEeCcHHHHHHHHHHHHHHhCCCCceEEEEeCCCCHHHHHHHH---h
Confidence 445555544366533333332221 3568999999999988887777765421 3788899999888775433 2
Q ss_pred cccccccccccccCCCCCcCCCCCCceeEEEEeCCCC--CcCcCCCCCCCCCEEEEecCCC
Q 028124 102 HTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACL--PLLSSGESAISARVLINYELPT 160 (213)
Q Consensus 102 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~iLV~Td~~~--~~~~rGld~~~v~~VI~yd~P~ 160 (213)
. .+++|+|.--+ -++..-+++.++++||.-+...
T Consensus 107 ~-------------------------~~iiv~T~~~l~~~l~~~~~~~~~~~liVvDEaH~ 142 (773)
T PRK13766 107 K-------------------------AKVIVATPQVIENDLIAGRISLEDVSLLIFDEAHR 142 (773)
T ss_pred C-------------------------CCEEEECHHHHHHHHHcCCCChhhCcEEEEECCcc
Confidence 3 56899986200 0023456777888888766654
No 215
>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.
Probab=77.27 E-value=3.5 Score=29.49 Aligned_cols=39 Identities=8% Similarity=0.139 Sum_probs=31.0
Q ss_pred CCCCcEEEEeCchHHHHHHHHHHhccCCceEEEecCCCC
Q 028124 51 RPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLA 89 (213)
Q Consensus 51 ~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~lhg~~~ 89 (213)
.+.+++||||.+-..+...+..|...|+-.+..+.|++.
T Consensus 59 ~~~~~ivvyC~~G~rs~~a~~~L~~~G~~~v~~l~GG~~ 97 (101)
T cd01518 59 LKGKKVLMYCTGGIRCEKASAYLKERGFKNVYQLKGGIL 97 (101)
T ss_pred cCCCEEEEECCCchhHHHHHHHHHHhCCcceeeechhHH
Confidence 356789999998888888888998888435778888864
No 216
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=76.85 E-value=7.3 Score=37.05 Aligned_cols=95 Identities=9% Similarity=0.143 Sum_probs=65.6
Q ss_pred CCCCcEEEEeCchHHHHHHHHHHhccC---CceEEEecCCCCHHHHHHHHHHHhcccccccccccccCCCCCcCCCCCCc
Q 028124 51 RPGLPMIVCCSSRDELDAVCSAVSNLA---DISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHK 127 (213)
Q Consensus 51 ~~~~~~IIF~~~~~~~~~l~~~L~~~~---~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~~~~~~~~~~~~~~~~~~~~~~ 127 (213)
..+..+||-++|++-|..+.+.+...+ .+++.+++|+.+...+. ++.+.|
T Consensus 163 ~~~P~vLVL~PTRELA~QV~~~~~~~~~~~~~~~~cvyGG~~~~~Q~---~~l~~g------------------------ 215 (519)
T KOG0331|consen 163 GDGPIVLVLAPTRELAVQVQAEAREFGKSLRLRSTCVYGGAPKGPQL---RDLERG------------------------ 215 (519)
T ss_pred CCCCeEEEEcCcHHHHHHHHHHHHHHcCCCCccEEEEeCCCCccHHH---HHHhcC------------------------
Confidence 346779999999999999988887652 26699999999877764 455566
Q ss_pred eeEEEEeCCCC-CcC-cCCCCCCCCCEEEE--------ecCCCChHHHHHhhccc
Q 028124 128 SHMIVVTDACL-PLL-SSGESAISARVLIN--------YELPTKKETYIRRMTTC 172 (213)
Q Consensus 128 ~~iLV~Td~~~-~~~-~rGld~~~v~~VI~--------yd~P~~~~~yi~R~GR~ 172 (213)
++|+|+|+-.+ -.+ ..-+|+..+.++|- .+|-.++...++++.|.
T Consensus 216 vdiviaTPGRl~d~le~g~~~l~~v~ylVLDEADrMldmGFe~qI~~Il~~i~~~ 270 (519)
T KOG0331|consen 216 VDVVIATPGRLIDLLEEGSLNLSRVTYLVLDEADRMLDMGFEPQIRKILSQIPRP 270 (519)
T ss_pred CcEEEeCChHHHHHHHcCCccccceeEEEeccHHhhhccccHHHHHHHHHhcCCC
Confidence 88999997410 001 23357777777774 23444566667777664
No 217
>cd01535 4RHOD_Repeat_4 Member of the Rhodanese Homology Domain superfamily, repeat 4. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 4th repeat which, in general, contains the putative catalytic Cys residue.
Probab=76.66 E-value=9.3 Score=29.78 Aligned_cols=37 Identities=11% Similarity=0.079 Sum_probs=32.2
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhccCCceEEEecCCC
Q 028124 52 PGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDL 88 (213)
Q Consensus 52 ~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~lhg~~ 88 (213)
+..++||+|.+-..+...+..|...|...+..+.|++
T Consensus 48 ~~~~vVv~c~~g~~a~~aa~~L~~~G~~~v~~L~GG~ 84 (145)
T cd01535 48 AAERYVLTCGSSLLARFAAADLAALTVKPVFVLEGGT 84 (145)
T ss_pred CCCCEEEEeCCChHHHHHHHHHHHcCCcCeEEecCcH
Confidence 4679999999988888899999988855899999996
No 218
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=75.85 E-value=15 Score=35.26 Aligned_cols=88 Identities=18% Similarity=0.124 Sum_probs=61.2
Q ss_pred CCCCcEEEEeCchHHHHHHHHHH---hccCCceEEEecCCCCHHHHHHHHHHHhcccccccccccccCCCCCcCCCCCCc
Q 028124 51 RPGLPMIVCCSSRDELDAVCSAV---SNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHK 127 (213)
Q Consensus 51 ~~~~~~IIF~~~~~~~~~l~~~L---~~~~~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~~~~~~~~~~~~~~~~~~~~~~ 127 (213)
.+..++||.|+|+.-+-.+++.. ...-++.+...-|+++-..+...|+ +.
T Consensus 250 ~~~TRVLVL~PTRELaiQv~sV~~qlaqFt~I~~~L~vGGL~lk~QE~~LR---s~------------------------ 302 (691)
T KOG0338|consen 250 VAATRVLVLVPTRELAIQVHSVTKQLAQFTDITVGLAVGGLDLKAQEAVLR---SR------------------------ 302 (691)
T ss_pred CcceeEEEEeccHHHHHHHHHHHHHHHhhccceeeeeecCccHHHHHHHHh---hC------------------------
Confidence 34589999999999776655554 4444577888889999888876654 43
Q ss_pred eeEEEEeCCCCC---cCcCCCCCCCCCEEEEecCCCChHHH
Q 028124 128 SHMIVVTDACLP---LLSSGESAISARVLINYELPTKKETY 165 (213)
Q Consensus 128 ~~iLV~Td~~~~---~~~rGld~~~v~~VI~yd~P~~~~~y 165 (213)
.+|+|+|+-.+= --+-++++.++.++|.-..-+-.+.|
T Consensus 303 PDIVIATPGRlIDHlrNs~sf~ldsiEVLvlDEADRMLeeg 343 (691)
T KOG0338|consen 303 PDIVIATPGRLIDHLRNSPSFNLDSIEVLVLDEADRMLEEG 343 (691)
T ss_pred CCEEEecchhHHHHhccCCCccccceeEEEechHHHHHHHH
Confidence 789999985200 01567788888888876555544444
No 219
>cd01525 RHOD_Kc Member of the Rhodanese Homology Domain superfamily. Included in this CD are the rhodanese-like domains found C-terminal of the serine/threonine protein kinases catalytic (S_TKc) domain and the Tre-2, BUB2p, Cdc16p (TBC) domain. The putative active site Cys residue is not present in this CD.
Probab=75.08 E-value=4.3 Score=29.04 Aligned_cols=37 Identities=8% Similarity=0.107 Sum_probs=30.6
Q ss_pred CCcEEEEeCchHHHHHHHHHHhccCCceEEEecCCCC
Q 028124 53 GLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLA 89 (213)
Q Consensus 53 ~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~lhg~~~ 89 (213)
..+++++|.+-..+...+..|...|+-.+..+.|+++
T Consensus 65 ~~~vv~~c~~g~~s~~~a~~L~~~G~~~v~~l~GG~~ 101 (105)
T cd01525 65 GKIIVIVSHSHKHAALFAAFLVKCGVPRVCILDGGIN 101 (105)
T ss_pred CCeEEEEeCCCccHHHHHHHHHHcCCCCEEEEeCcHH
Confidence 5689999998888888999999888545778999873
No 220
>cd01445 TST_Repeats Thiosulfate sulfurtransferases (TST) contain 2 copies of the Rhodanese Homology Domain. Only the second repeat contains the catalytically active Cys residue. The role of the 1st repeat is uncertain, but believed to be involved in protein interaction. This CD aligns the 1st and 2nd repeats.
Probab=74.89 E-value=8.6 Score=29.67 Aligned_cols=50 Identities=6% Similarity=-0.050 Sum_probs=35.3
Q ss_pred HHHHHHHHhhcCCCCCCcEEEEeCc---hHHHHHHHHHHhccCCceEEEecCCCC
Q 028124 38 TLVELLHLVVAGRRPGLPMIVCCSS---RDELDAVCSAVSNLADISFSSLHSDLA 89 (213)
Q Consensus 38 ~L~~ll~~~~~~~~~~~~~IIF~~~---~~~~~~l~~~L~~~~~~~~~~lhg~~~ 89 (213)
.|.+++..+ + -.+..++||||++ -..+..++-.|+..|.-.+..+.|+++
T Consensus 82 ~~~~~~~~~-G-I~~~~~vVvY~~~~~~g~~A~r~~~~l~~~G~~~v~ildGG~~ 134 (138)
T cd01445 82 EFAAMFEAK-G-IDLDKHLIATDGDDLGGFTACHIALAARLCGHPDVAILDGGFF 134 (138)
T ss_pred HHHHHHHHc-C-CCCCCeEEEECCCCCcchHHHHHHHHHHHcCCCCeEEeCCCHH
Confidence 456666552 2 2457899999986 456777777888778556888999864
No 221
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=74.80 E-value=4.3 Score=41.11 Aligned_cols=123 Identities=15% Similarity=0.172 Sum_probs=82.7
Q ss_pred HHHHHHHHHHHhhcCCCCCCcEEEEeCchHHHHHHHHHHhcc------CCceEEEecCCCCHHHHHHHHHHHhccccccc
Q 028124 35 KMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNL------ADISFSSLHSDLAETERTLILEEFRHTAMKWN 108 (213)
Q Consensus 35 K~~~L~~ll~~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~------~~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~~~ 108 (213)
-.+++..++..+.. +.-.+-+++|-.--...-.|..+|... .......+|+.+...+..++.+....|.
T Consensus 626 ~f~l~Eal~~~i~s-~~i~gailvflpgwa~i~~L~~~ll~~~~fg~~~~y~ilp~Hsq~~~~eqrkvf~~~p~gv---- 700 (1282)
T KOG0921|consen 626 PFGLIEALLNDIAS-RNIDGAVLVFLPGWAEIMTLCNRLLEHQEFGQANKYEILPLHSQLTSQEQRKVFEPVPEGV---- 700 (1282)
T ss_pred hhHHHHHHHhhhcc-cCCccceeeecCchHHhhhhhhhhhhhhhhccchhcccccchhhcccHhhhhccCcccccc----
Confidence 44555555555333 334567889988888888888887543 1246788999888888888888777764
Q ss_pred ccccccCCCCCcCCCCCCceeEEEEeCCCCCcCcCCCCCCCCCEEEEecC-----------------CC-ChHHHHHhhc
Q 028124 109 QKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYEL-----------------PT-KKETYIRRMT 170 (213)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~rGld~~~v~~VI~yd~-----------------P~-~~~~yi~R~G 170 (213)
.+++++|.+ +.--+.+.++.+||.-+. -| +....+||-|
T Consensus 701 -------------------~kii~stni----aetsiTidd~v~vid~cka~~~~~~s~nn~~~~Atvw~sktn~eqr~g 757 (1282)
T KOG0921|consen 701 -------------------TKIILSTNI----AETSITIDDVVYVIDSCKAKEKLFTSHNNMTHYATVWASKTNLEQRKG 757 (1282)
T ss_pred -------------------cccccccce----eeEeeeecceeEEEeeeeeeeeeeccccceeeeeeecccccchHhhcc
Confidence 666666766 666666666555554321 11 3456689999
Q ss_pred ccc-CCCCeEEEEEeC
Q 028124 171 TCL-AADGSVINIVVG 185 (213)
Q Consensus 171 R~~-~~~g~~i~~~~~ 185 (213)
|++ -+.|.|..++..
T Consensus 758 r~grvR~G~~f~lcs~ 773 (1282)
T KOG0921|consen 758 RAGRVRPGFCFHLCSR 773 (1282)
T ss_pred cCceecccccccccHH
Confidence 975 456888888764
No 222
>cd01534 4RHOD_Repeat_3 Member of the Rhodanese Homology Domain superfamily, repeat 3. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 3rd repeat which does not contain the putative catalytic Cys residue.
Probab=74.59 E-value=5 Score=28.36 Aligned_cols=37 Identities=16% Similarity=0.196 Sum_probs=30.3
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhccCCceEEEecCCCC
Q 028124 52 PGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLA 89 (213)
Q Consensus 52 ~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~lhg~~~ 89 (213)
...++++||.+-..+...+..|...| +.+..+.|++.
T Consensus 55 ~~~~iv~~c~~G~rs~~aa~~L~~~G-~~v~~l~GG~~ 91 (95)
T cd01534 55 RGARIVLADDDGVRADMTASWLAQMG-WEVYVLEGGLA 91 (95)
T ss_pred CCCeEEEECCCCChHHHHHHHHHHcC-CEEEEecCcHH
Confidence 35789999998878888889998888 56777888873
No 223
>PRK05728 DNA polymerase III subunit chi; Validated
Probab=74.45 E-value=10 Score=29.64 Aligned_cols=52 Identities=19% Similarity=0.209 Sum_probs=39.0
Q ss_pred CcchHHHHHHHHHHHhhcCCCCCCcEEEEeCchHHHHHHHHHHhccCCceEEEecC
Q 028124 31 RLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHS 86 (213)
Q Consensus 31 ~~~~K~~~L~~ll~~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~lhg 86 (213)
....+.+.++.|+++... .+.+++|+|.+...++.|-+.|=... -....=|+
T Consensus 10 ~~~~~~~~~c~L~~ka~~---~g~rv~I~~~d~~~a~~lD~~LW~~~-~~sFlPH~ 61 (142)
T PRK05728 10 TLSALEALLCELAEKALR---AGWRVLVQCEDEEQAEALDEALWTFR-DESFLPHG 61 (142)
T ss_pred CchhHHHHHHHHHHHHHH---CCCEEEEEcCCHHHHHHHHHHhcCCC-CCcCCCCC
Confidence 344599999999987543 68999999999999999998885543 13444454
No 224
>cd01526 RHOD_ThiF Member of the Rhodanese Homology Domain superfamily. This CD includes several putative molybdopterin synthase sulfurylases including the molybdenum cofactor biosynthetic protein (CnxF) of Aspergillus nidulans and the molybdenum cofactor synthesis protein 3 (MOCS3) of Homo sapiens. These rhodanese-like domains are found C-terminal of the ThiF and MoeZ_MoeB domains.
Probab=74.28 E-value=4.2 Score=30.35 Aligned_cols=39 Identities=13% Similarity=0.233 Sum_probs=32.5
Q ss_pred CCCCcEEEEeCchHHHHHHHHHHhccCC-ceEEEecCCCC
Q 028124 51 RPGLPMIVCCSSRDELDAVCSAVSNLAD-ISFSSLHSDLA 89 (213)
Q Consensus 51 ~~~~~~IIF~~~~~~~~~l~~~L~~~~~-~~~~~lhg~~~ 89 (213)
...+++++||++-..+...+..|+..|. -.+..+.|++.
T Consensus 70 ~~~~~ivv~C~~G~rs~~aa~~L~~~G~~~~v~~l~GG~~ 109 (122)
T cd01526 70 DKDSPIYVVCRRGNDSQTAVRKLKELGLERFVRDIIGGLK 109 (122)
T ss_pred CCCCcEEEECCCCCcHHHHHHHHHHcCCccceeeecchHH
Confidence 3568999999998889999999999983 26889999873
No 225
>cd01521 RHOD_PspE2 Member of the Rhodanese Homology Domain superfamily. This CD includes the putative rhodanese-like protein, Psp2, of Yersinia pestis biovar Medievalis and other similar uncharacterized proteins.
Probab=72.78 E-value=6.6 Score=28.63 Aligned_cols=38 Identities=11% Similarity=0.228 Sum_probs=30.5
Q ss_pred CCCCcEEEEeCch--HHHHHHHHHHhccCCceEEEecCCCC
Q 028124 51 RPGLPMIVCCSSR--DELDAVCSAVSNLADISFSSLHSDLA 89 (213)
Q Consensus 51 ~~~~~~IIF~~~~--~~~~~l~~~L~~~~~~~~~~lhg~~~ 89 (213)
.+..++|+||++- ..+..++..|...| +.+..+.|++.
T Consensus 62 ~~~~~vvvyc~~g~~~~s~~~a~~l~~~G-~~v~~l~GG~~ 101 (110)
T cd01521 62 DKEKLFVVYCDGPGCNGATKAALKLAELG-FPVKEMIGGLD 101 (110)
T ss_pred CCCCeEEEEECCCCCchHHHHHHHHHHcC-CeEEEecCCHH
Confidence 3568999999975 36788889998888 57888999873
No 226
>cd01447 Polysulfide_ST Polysulfide-sulfurtransferase - Rhodanese Homology Domain. This domain is believed to serve as a polysulfide binding and transferase domain in anaerobic gram-negative bacteria, functioning in oxidative phosphorylation with polysulfide-sulfur as a terminal electron acceptor. The active site contains the same conserved cysteine that is the catalytic residue in other Rhodanese Homology Domain proteins.
Probab=72.54 E-value=3.9 Score=28.97 Aligned_cols=39 Identities=8% Similarity=0.166 Sum_probs=30.8
Q ss_pred CCCCcEEEEeCchHHHHHHHHHHhccCCceEEEecCCCC
Q 028124 51 RPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLA 89 (213)
Q Consensus 51 ~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~lhg~~~ 89 (213)
.+..+++|||.+-..+...+..|...|.-.+..+.|++.
T Consensus 59 ~~~~~ivv~c~~g~~s~~~~~~l~~~G~~~v~~l~Gg~~ 97 (103)
T cd01447 59 AEDKPFVFYCASGWRSALAGKTLQDMGLKPVYNIEGGFK 97 (103)
T ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHcChHHhEeecCcHH
Confidence 356899999998777888889998888333778888763
No 227
>cd01522 RHOD_1 Member of the Rhodanese Homology Domain superfamily, subgroup 1. This CD includes the putative rhodanese-related sulfurtransferases of several uncharacterized proteins.
Probab=71.33 E-value=7.1 Score=28.97 Aligned_cols=38 Identities=13% Similarity=0.201 Sum_probs=31.8
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhccCCceEEEecCCCC
Q 028124 52 PGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLA 89 (213)
Q Consensus 52 ~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~lhg~~~ 89 (213)
+.+++|+||++-..+...+..|...|.-.+..+.|++.
T Consensus 63 ~~~~ivv~C~~G~rs~~aa~~L~~~G~~~v~~l~gG~~ 100 (117)
T cd01522 63 KDRPVLLLCRSGNRSIAAAEAAAQAGFTNVYNVLEGFE 100 (117)
T ss_pred CCCeEEEEcCCCccHHHHHHHHHHCCCCeEEECcCcee
Confidence 56889999999888999999999988545777888874
No 228
>cd00032 CASc Caspase, interleukin-1 beta converting enzyme (ICE) homologues; Cysteine-dependent aspartate-directed proteases that mediate programmed cell death (apoptosis). Caspases are synthesized as inactive zymogens and activated by proteolysis of the peptide backbone adjacent to an aspartate. The resulting two subunits associate to form an (alpha)2(beta)2-tetramer which is the active enzyme. Activation of caspases can be mediated by other caspase homologs.
Probab=69.21 E-value=68 Score=26.97 Aligned_cols=89 Identities=13% Similarity=0.132 Sum_probs=62.2
Q ss_pred CCCCcEEEEeCc------------hHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhcccccccccccccCCCC
Q 028124 51 RPGLPMIVCCSS------------RDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDE 118 (213)
Q Consensus 51 ~~~~~~IIF~~~------------~~~~~~l~~~L~~~~~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~~~~~~~~~~~~~ 118 (213)
.+.+.+||+.|. ...++.|++.|++.| +.+ .++.+++..+-.+.+++|.+..+
T Consensus 7 ~~~g~aLII~n~~f~~~~~~r~g~~~D~~~l~~~f~~lg-F~V-~~~~nlt~~~~~~~l~~f~~~~~------------- 71 (243)
T cd00032 7 KRRGLALIINNENFDKGLKDRDGTDVDAENLTKLFESLG-YEV-EVKNNLTAEEILEELKEFASPDH------------- 71 (243)
T ss_pred CCCCEEEEEechhcCCCCCCCCChHHHHHHHHHHHHHCC-CEE-EEeCCCCHHHHHHHHHHHHhccC-------------
Confidence 355678888874 356899999999998 566 56778999999999999985211
Q ss_pred CcCCCCCCceeEEEEeCCCCCcCcCCCCCCCCCEEEEec-CCCChHHHHHhhc
Q 028124 119 SETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYE-LPTKKETYIRRMT 170 (213)
Q Consensus 119 ~~~~~~~~~~~iLV~Td~~~~~~~rGld~~~v~~VI~yd-~P~~~~~yi~R~G 170 (213)
.....+|+. . ++.|.. +.|+=.| -+-+.++.++...
T Consensus 72 -------~~~d~~v~~-~----~sHG~~----~~l~~~D~~~v~l~~i~~~f~ 108 (243)
T cd00032 72 -------SDSDSFVCV-I----LSHGEE----GGIYGTDGDVVPIDEITSLFN 108 (243)
T ss_pred -------CCCCeeEEE-E----CCCCCC----CEEEEecCcEEEHHHHHHhhc
Confidence 124444444 4 678865 6777666 5556777777665
No 229
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=68.97 E-value=61 Score=26.25 Aligned_cols=64 Identities=16% Similarity=0.223 Sum_probs=47.3
Q ss_pred HHHHHHHHHhhcCCCCCCcEEEEeCchHHHHHHHHHHhcc-CCceEEEecCCCCHHHHHHHHHHHhcc
Q 028124 37 ETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNL-ADISFSSLHSDLAETERTLILEEFRHT 103 (213)
Q Consensus 37 ~~L~~ll~~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~-~~~~~~~lhg~~~~~~R~~~l~~Fr~g 103 (213)
+++.++++... ..+.++.++-.+...++.+++.|+.. +++.+...||-.++++...++++.+..
T Consensus 35 dl~~~l~~~~~---~~~~~vfllG~~~~v~~~~~~~l~~~yP~l~i~g~~g~f~~~~~~~i~~~I~~s 99 (177)
T TIGR00696 35 DLMEELCQRAG---KEKLPIFLYGGKPDVLQQLKVKLIKEYPKLKIVGAFGPLEPEERKAALAKIARS 99 (177)
T ss_pred HHHHHHHHHHH---HcCCeEEEECCCHHHHHHHHHHHHHHCCCCEEEEECCCCChHHHHHHHHHHHHc
Confidence 45555555421 24468888888889999999999765 557777779999888878888888775
No 230
>PRK14873 primosome assembly protein PriA; Provisional
Probab=68.34 E-value=42 Score=33.04 Aligned_cols=54 Identities=11% Similarity=0.138 Sum_probs=31.5
Q ss_pred ceeEEEEeCCCCCcCcCCCCCCCCCEEEEec------CCC------ChHHHHHhhcccc--CCCCeEEEEEeC
Q 028124 127 KSHMIVVTDACLPLLSSGESAISARVLINYE------LPT------KKETYIRRMTTCL--AADGSVINIVVG 185 (213)
Q Consensus 127 ~~~iLV~Td~~~~~~~rGld~~~v~~VI~yd------~P~------~~~~yi~R~GR~~--~~~g~~i~~~~~ 185 (213)
+.+|||.|..+.|.++ +++..|+..| .|. ....+.|-+||++ ..+|.++....+
T Consensus 471 ~~~IlVGTqgaepm~~-----g~~~lV~ildaD~~L~~pDfRA~Er~~qll~qvagragr~~~~G~V~iq~~p 538 (665)
T PRK14873 471 GPALVVATPGAEPRVE-----GGYGAALLLDAWALLGRQDLRAAEDTLRRWMAAAALVRPRADGGQVVVVAES 538 (665)
T ss_pred CCCEEEECCCCccccc-----CCceEEEEEcchhhhcCCCcChHHHHHHHHHHHHHhhcCCCCCCEEEEEeCC
Confidence 3999999994333366 3567666554 232 1233456668864 345777765433
No 231
>PF12683 DUF3798: Protein of unknown function (DUF3798); InterPro: IPR024258 This entry represents functionally uncharacterised proteins that are found in bacteria. They are typically between 247 and 417 amino acids in length. Most of the proteins in this entry have an N-terminal lipoprotein attachment site. These proteins have distant similarity to periplasmic ligand binding families suggesting that this family has a similar role.; PDB: 3QI7_A.
Probab=67.96 E-value=9.2 Score=33.34 Aligned_cols=98 Identities=14% Similarity=0.224 Sum_probs=56.0
Q ss_pred CCCCcEEEEeCchHHHHHHHHHHhc-cCCceEEEecCCCCHHHHHHHHHHHhcccccccccccccCCCCCcCCCCCCcee
Q 028124 51 RPGLPMIVCCSSRDELDAVCSAVSN-LADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSH 129 (213)
Q Consensus 51 ~~~~~~IIF~~~~~~~~~l~~~L~~-~~~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (213)
.+.-++||||+...-.....+.++. ++ .+..+.|... +--.++++. .+
T Consensus 60 Dp~mKaIVv~q~vpGt~~af~kIkekRp--DIl~ia~~~~--EDp~~i~~~---------------------------aD 108 (275)
T PF12683_consen 60 DPDMKAIVVSQAVPGTAEAFRKIKEKRP--DILLIAGEPH--EDPEVISSA---------------------------AD 108 (275)
T ss_dssp -TTEEEEEEE-SS---HHHHHHHHHH-T--TSEEEESS----S-HHHHHHH---------------------------SS
T ss_pred CCCccEEEEeCCCcchHHHHHHHHhcCC--CeEEEcCCCc--CCHHHHhhc---------------------------cC
Confidence 6778999999998888888888875 45 4555566542 223334333 67
Q ss_pred EEEEeCCCCCcCcCCCCCC------CCCEEEEecCCCChHHHHHhhccc------cCCCCeEEEEEe
Q 028124 130 MIVVTDACLPLLSSGESAI------SARVLINYELPTKKETYIRRMTTC------LAADGSVINIVV 184 (213)
Q Consensus 130 iLV~Td~~~~~~~rGld~~------~v~~VI~yd~P~~~~~yi~R~GR~------~~~~g~~i~~~~ 184 (213)
+.+.+|- .+||..++ .+...|||.+|+... |-.-.-|+ ...-|.-+.+++
T Consensus 109 i~~~~D~----~~~G~~i~~~Ak~mGAktFVh~sfprhms-~~~l~~Rr~~M~~~C~~lGi~fv~~t 170 (275)
T PF12683_consen 109 IVVNPDE----ISRGYTIVWAAKKMGAKTFVHYSFPRHMS-YELLARRRDIMEEACKDLGIKFVEVT 170 (275)
T ss_dssp EEEE--H----HHHHHHHHHHHHHTT-S-EEEEEETTGGG-SHHHHHHHHHHHHHHHHCT--EEEEE
T ss_pred eEeccch----hhccHHHHHHHHHcCCceEEEEechhhcc-hHHHHHHHHHHHHHHHHcCCeEEEEe
Confidence 8888998 89998874 688999999999876 43333232 233466666654
No 232
>cd01530 Cdc25 Cdc25 phosphatases are members of the Rhodanese Homology Domain superfamily. They activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. Cdc25A phosphatase functions to regulate S phase entry and Cdc25B is required for G2/M phase transition of the cell cycle. The Cdc25 domain binds oxyanions at the catalytic site and has the signature motif (H/YCxxxxxR).
Probab=67.80 E-value=7.9 Score=29.08 Aligned_cols=39 Identities=15% Similarity=0.143 Sum_probs=30.3
Q ss_pred CCCCcEEEEeC-chHHHHHHHHHHhcc------------CCceEEEecCCCC
Q 028124 51 RPGLPMIVCCS-SRDELDAVCSAVSNL------------ADISFSSLHSDLA 89 (213)
Q Consensus 51 ~~~~~~IIF~~-~~~~~~~l~~~L~~~------------~~~~~~~lhg~~~ 89 (213)
.+..++|++|+ +-..+...+..|+.. |+..+..|.|++.
T Consensus 66 ~~~~~vv~yC~~sg~rs~~aa~~L~~~~~~~~~~~~~~~g~~~v~~L~GG~~ 117 (121)
T cd01530 66 KKRRVLIFHCEFSSKRGPRMARHLRNLDRELNSNRYPLLYYPEIYILEGGYK 117 (121)
T ss_pred CCCCEEEEECCCccccHHHHHHHHHHHhhhhccccCCCCCCCeEEEEcChhH
Confidence 35678999997 777788888888763 6557889999864
No 233
>TIGR03865 PQQ_CXXCW PQQ-dependent catabolism-associated CXXCW motif protein. Members of this protein family have a CXXXCW motif, consistent with a possible role in redox cofactor binding. This protein family shows strong relationships by phylogenetic profiling and conserved gene neighborhoods with a transport system for alcohols metabolized by PQQ-dependent enzymes.
Probab=66.13 E-value=20 Score=28.51 Aligned_cols=39 Identities=5% Similarity=-0.041 Sum_probs=30.3
Q ss_pred CCCCcEEEEeCchH-HHHHHHHHHhccCCceEEEecCCCC
Q 028124 51 RPGLPMIVCCSSRD-ELDAVCSAVSNLADISFSSLHSDLA 89 (213)
Q Consensus 51 ~~~~~~IIF~~~~~-~~~~l~~~L~~~~~~~~~~lhg~~~ 89 (213)
.+..++|+||.+-. .+...+..|...|+-.+..+.|++.
T Consensus 114 ~~d~~IVvYC~~G~~~S~~aa~~L~~~G~~~V~~l~GG~~ 153 (162)
T TIGR03865 114 DKDRPLVFYCLADCWMSWNAAKRALAYGYSNVYWYPDGTD 153 (162)
T ss_pred CCCCEEEEEECCCCHHHHHHHHHHHhcCCcceEEecCCHH
Confidence 46789999999753 5667788888888656888999863
No 234
>PRK10287 thiosulfate:cyanide sulfurtransferase; Provisional
Probab=65.58 E-value=23 Score=26.02 Aligned_cols=36 Identities=8% Similarity=0.150 Sum_probs=28.1
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhccCCceEEEecCCC
Q 028124 52 PGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDL 88 (213)
Q Consensus 52 ~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~lhg~~ 88 (213)
...++++||++-..+...+..|...| +......|++
T Consensus 59 ~~~~IVlyC~~G~rS~~aa~~L~~~G-~~~v~~~GG~ 94 (104)
T PRK10287 59 KNDTVKLYCNAGRQSGQAKEILSEMG-YTHAENAGGL 94 (104)
T ss_pred CCCeEEEEeCCChHHHHHHHHHHHcC-CCeEEecCCH
Confidence 45679999999888889999998888 4544556775
No 235
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=65.52 E-value=29 Score=34.12 Aligned_cols=44 Identities=18% Similarity=0.225 Sum_probs=35.4
Q ss_pred CCCCcEEEEeCchHHHHHHHHHHhc----cCCceEEEecCCCCHHHHHH
Q 028124 51 RPGLPMIVCCSSRDELDAVCSAVSN----LADISFSSLHSDLAETERTL 95 (213)
Q Consensus 51 ~~~~~~IIF~~~~~~~~~l~~~L~~----~~~~~~~~lhg~~~~~~R~~ 95 (213)
..+.+++|.++|..-|...++.+.. .| +++..+.|+++.++|..
T Consensus 142 l~G~~v~VvTptreLA~qdae~~~~l~~~lG-lsv~~i~gg~~~~~r~~ 189 (656)
T PRK12898 142 LAGLPVHVITVNDYLAERDAELMRPLYEALG-LTVGCVVEDQSPDERRA 189 (656)
T ss_pred hcCCeEEEEcCcHHHHHHHHHHHHHHHhhcC-CEEEEEeCCCCHHHHHH
Confidence 3568999999999998888777764 36 89999999998776553
No 236
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=65.25 E-value=42 Score=33.73 Aligned_cols=51 Identities=12% Similarity=0.083 Sum_probs=37.5
Q ss_pred CCCCcEEEEeCchHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhcc
Q 028124 51 RPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHT 103 (213)
Q Consensus 51 ~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~lhg~~~~~~R~~~l~~Fr~g 103 (213)
...+|.+|.|+----..|..+.-+-.+++.++.+||+ +++|....+.+...
T Consensus 215 ~~~GPfLVi~P~StL~NW~~Ef~rf~P~l~~~~~~Gd--k~eR~~~~r~~~~~ 265 (971)
T KOG0385|consen 215 GIPGPFLVIAPKSTLDNWMNEFKRFTPSLNVVVYHGD--KEERAALRRDIMLP 265 (971)
T ss_pred CCCCCeEEEeeHhhHHHHHHHHHHhCCCcceEEEeCC--HHHHHHHHHHhhcc
Confidence 3468999999864444444444344477999999997 68999999988775
No 237
>PF04364 DNA_pol3_chi: DNA polymerase III chi subunit, HolC; InterPro: IPR007459 The DNA polymerase III holoenzyme (2.7.7.7 from EC) is the polymerase responsible for the replication of the Escherichia coli chromosome. The holoenzyme is composed of the DNA polymerase III core, the sliding clamp, and the DnaX clamp loading complex. The DnaX complex contains either the tau or gamma product of gene dnax, complexed to delta.delta and to chi psi. Chi forms a 1:1 heterodimer with psi. The chi psi complex functions by increasing the affinity of tau and gamma for delta.delta allowing a functional clamp-loading complex to form at physiological subunit concentrations. Psi is responsible for the interaction with DnaX (gamma/tau), but psi is insoluble unless it is in a complex with chi [].; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication; PDB: 3SXU_A 1EM8_C.
Probab=65.13 E-value=17 Score=28.08 Aligned_cols=38 Identities=13% Similarity=0.219 Sum_probs=29.4
Q ss_pred HHHHHHHHHHhhcCCCCCCcEEEEeCchHHHHHHHHHHhcc
Q 028124 36 METLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNL 76 (213)
Q Consensus 36 ~~~L~~ll~~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~ 76 (213)
.+.++.|+++... .+.+++|+|.....++.|-+.|=..
T Consensus 15 ~~~~c~L~~k~~~---~g~rv~V~~~d~~~a~~lD~~LW~~ 52 (137)
T PF04364_consen 15 ERFACRLAEKAYR---QGQRVLVLCPDEEQAEALDELLWTF 52 (137)
T ss_dssp HHHHHHHHHHHHH---TT--EEEE-SSHHHHHHHHHHTTTS
T ss_pred HHHHHHHHHHHHH---cCCeEEEEeCCHHHHHHHHHHHHCC
Confidence 5888999987544 6899999999999999999999554
No 238
>PF11496 HDA2-3: Class II histone deacetylase complex subunits 2 and 3; InterPro: IPR021006 This entry contains the class II histone deacetylase complex subunits HDA2 and HDA3 is found in fungi. The member from Schizosaccharomyces pombe (Fission yeast) is referred to as Ccq1 in Q10432 from SWISSPROT. These proteins associate with HDA1 to generate the activity of the HDA1 histone deacetylase complex. HDA1 interacts with itself and with the HDA2-HDA3 subcomplex to form a probable tetramer and these interactions are necessary for catalytic activity. The HDA1 histone deacetylase complex is responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. HDA2 and HDA3 have a conserved coiled-coil domain towards their C terminus []. ; PDB: 3HGQ_C 3HGT_B.
Probab=64.87 E-value=84 Score=27.68 Aligned_cols=143 Identities=15% Similarity=0.195 Sum_probs=65.4
Q ss_pred chHHHHHHHHHHHhhcC--CCCCCcEEEEeCchHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhccccccccc
Q 028124 33 QFKMETLVELLHLVVAG--RRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQK 110 (213)
Q Consensus 33 ~~K~~~L~~ll~~~~~~--~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~~~~~ 110 (213)
..|+.+|.+++..+... .....+++|.++..++.+.+-..|...+ +..--+.|..-..+....- .+...+
T Consensus 95 S~KF~~L~~Li~~li~~~~~~~~~~ilIv~~~~k~ldllE~~llGk~-~~~kr~sg~~l~~~~~~~~-~~~~~~------ 166 (297)
T PF11496_consen 95 SGKFQFLNDLIDSLIDRDRREYPLHILIVSRSGKELDLLEGLLLGKK-LNYKRYSGESLYDEKHKVP-KNGNTE------ 166 (297)
T ss_dssp -HHHHHHHHHHHHH-----TTSSEEEEEEE-STHHHHHHHHHHTTSS-SEEEESSS--S--S---S--------------
T ss_pred CchHHHHHHHHHHHHhhhcccCCceEEEEecCccHHHHHHHHHccCC-eeEEecCCCCCcCccccCC-cccccc------
Confidence 35999999999886321 2456899999999999999999998876 7888888876544432211 111000
Q ss_pred ccccCCCCCcCCCCCCceeEEEE-eCCCCCcCcC----CCCCCCCCEEEEecCCCCh-HHHHHhhccccC--CCCeEEEE
Q 028124 111 VTEQSGDESETGKDEHKSHMIVV-TDACLPLLSS----GESAISARVLINYELPTKK-ETYIRRMTTCLA--ADGSVINI 182 (213)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~iLV~-Td~~~~~~~r----Gld~~~v~~VI~yd~P~~~-~~yi~R~GR~~~--~~g~~i~~ 182 (213)
...........++.....+-++ |+- +.. .++-..++.||-||.--+. ...++++-...+ +.--+|-+
T Consensus 167 -~~~~~~~~~~~~~~~~~~i~L~ts~~----l~~~~~~~~~~~~~d~IIsfD~~~d~~~p~i~~lR~~~~~~~~~PiirL 241 (297)
T PF11496_consen 167 -SNSSNNSKKKDKGSLSVWIHLITSDQ----LYNNKPPLLSNYNFDLIISFDPSFDTSLPSIEQLRTQNRRNRLCPIIRL 241 (297)
T ss_dssp ----------------SEEEEEEESS-------TTTS--TT-S-EEEEEE-SST--TTSHHHHHHH-------S--EEEE
T ss_pred -cccccccccccccccceEEEEecCcc----ccccCCCccccCCcCEEEEecCCCCCCChHHHHHHhhcCCCCCCcEEEE
Confidence 0000000011222233444444 443 333 1334477899999976543 344554421111 34556666
Q ss_pred EeCchh
Q 028124 183 VVGGEV 188 (213)
Q Consensus 183 ~~~~e~ 188 (213)
+..+..
T Consensus 242 v~~nSi 247 (297)
T PF11496_consen 242 VPSNSI 247 (297)
T ss_dssp EETTSH
T ss_pred eeCCCH
Confidence 665433
No 239
>PLN02160 thiosulfate sulfurtransferase
Probab=64.61 E-value=12 Score=28.86 Aligned_cols=38 Identities=11% Similarity=0.084 Sum_probs=32.0
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhccCCceEEEecCCCC
Q 028124 52 PGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLA 89 (213)
Q Consensus 52 ~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~lhg~~~ 89 (213)
+..++|+||.+-.++...+..|...|.-.+..+.|++.
T Consensus 80 ~~~~IivyC~sG~RS~~Aa~~L~~~G~~~v~~l~GG~~ 117 (136)
T PLN02160 80 PADDILVGCQSGARSLKATTELVAAGYKKVRNKGGGYL 117 (136)
T ss_pred CCCcEEEECCCcHHHHHHHHHHHHcCCCCeeecCCcHH
Confidence 56799999999999999999999888445777888863
No 240
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=64.50 E-value=60 Score=24.61 Aligned_cols=106 Identities=10% Similarity=0.119 Sum_probs=66.5
Q ss_pred eEEEEEecCcchHHHHHHH-HHHHhhcCCCCCCcEEEEeCchHHHHHHHHHHhccC---CceEEEecCCCCHH-HHHHHH
Q 028124 23 RHFYVAVDRLQFKMETLVE-LLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLA---DISFSSLHSDLAET-ERTLIL 97 (213)
Q Consensus 23 ~~~~~~~~~~~~K~~~L~~-ll~~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~---~~~~~~lhg~~~~~-~R~~~l 97 (213)
++..+..+...=|-....- ++..+.. ....++|+.++++.-++...+.+.... ++.+..+|++.+.. +....+
T Consensus 15 ~~~li~aptGsGKT~~~~~~~l~~~~~--~~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (169)
T PF00270_consen 15 KNVLISAPTGSGKTLAYILPALNRLQE--GKDARVLIIVPTRALAEQQFERLRKFFSNTNVRVVLLHGGQSISEDQREVL 92 (169)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHHT--TSSSEEEEEESSHHHHHHHHHHHHHHTTTTTSSEEEESTTSCHHHHHHHHH
T ss_pred CCEEEECCCCCccHHHHHHHHHhhhcc--CCCceEEEEeecccccccccccccccccccccccccccccccccccccccc
Confidence 3455555555446555553 3344332 234599999999999999998887652 25789999998754 222222
Q ss_pred HHHhcccccccccccccCCCCCcCCCCCCceeEEEEeCCCCCcCc--CCCCCCCCCEEEEec
Q 028124 98 EEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLS--SGESAISARVLINYE 157 (213)
Q Consensus 98 ~~Fr~g~~~~~~~~~~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~--rGld~~~v~~VI~yd 157 (213)
.+ ..+++|+|..++-.+- ..+++..+++||.-+
T Consensus 93 ----~~-----------------------~~~ilv~T~~~l~~~~~~~~~~~~~~~~iViDE 127 (169)
T PF00270_consen 93 ----SN-----------------------QADILVTTPEQLLDLISNGKINISRLSLIVIDE 127 (169)
T ss_dssp ----HT-----------------------TSSEEEEEHHHHHHHHHTTSSTGTTESEEEEET
T ss_pred ----cc-----------------------cccccccCcchhhccccccccccccceeeccCc
Confidence 32 2889999986422222 234677788877643
No 241
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=64.31 E-value=49 Score=23.45 Aligned_cols=59 Identities=14% Similarity=0.137 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHhhcCCCCCCcEEEEeCchHHHHHHHHHHhccC--CceEEEecCCCCHHHHH
Q 028124 35 KMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLA--DISFSSLHSDLAETERT 94 (213)
Q Consensus 35 K~~~L~~ll~~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~--~~~~~~lhg~~~~~~R~ 94 (213)
|-..+..++..... .....+++|+|++...+++..+.+.... ...+..+++......+.
T Consensus 13 KT~~~~~~~~~~~~-~~~~~~~lv~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (144)
T cd00046 13 KTLAALLPILELLD-SLKGGQVLVLAPTRELANQVAERLKELFGEGIKVGYLIGGTSIKQQE 73 (144)
T ss_pred hhHHHHHHHHHHHh-cccCCCEEEEcCcHHHHHHHHHHHHHHhhCCcEEEEEecCcchhHHH
Confidence 66666666655332 2356899999999999999888886654 26788888876544433
No 242
>PRK00162 glpE thiosulfate sulfurtransferase; Validated
Probab=64.08 E-value=22 Score=25.55 Aligned_cols=38 Identities=11% Similarity=0.125 Sum_probs=30.9
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhccCCceEEEecCCCC
Q 028124 52 PGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLA 89 (213)
Q Consensus 52 ~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~lhg~~~ 89 (213)
...+++|+|.+-..+...+..|+..|.-.+..+.|++.
T Consensus 57 ~~~~ivv~c~~g~~s~~a~~~L~~~G~~~v~~l~GG~~ 94 (108)
T PRK00162 57 FDTPVMVMCYHGNSSQGAAQYLLQQGFDVVYSIDGGFE 94 (108)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHHCCchheEEecCCHH
Confidence 46789999998888888888999888445778888873
No 243
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=63.39 E-value=27 Score=32.96 Aligned_cols=79 Identities=19% Similarity=0.095 Sum_probs=50.3
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhccC---CceEEEecCCCCHHHHHHHHHHHhcccccccccccccCCCCCcCCCCCCce
Q 028124 52 PGLPMIVCCSSRDELDAVCSAVSNLA---DISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKS 128 (213)
Q Consensus 52 ~~~~~IIF~~~~~~~~~l~~~L~~~~---~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (213)
.+.++||.++|++-|..+.+.++..+ .++...+.|+.+..++ +.+++.+ .
T Consensus 195 ~~~~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~~~~~gG~~~~~q---~~~l~~~------------------------~ 247 (518)
T PLN00206 195 RNPLAMVLTPTRELCVQVEDQAKVLGKGLPFKTALVVGGDAMPQQ---LYRIQQG------------------------V 247 (518)
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHH---HHHhcCC------------------------C
Confidence 45689999999999887776665431 2566777776654443 2334454 7
Q ss_pred eEEEEeCCCCC-cC-cCCCCCCCCCEEEEec
Q 028124 129 HMIVVTDACLP-LL-SSGESAISARVLINYE 157 (213)
Q Consensus 129 ~iLV~Td~~~~-~~-~rGld~~~v~~VI~yd 157 (213)
+++|+|+-.+- ++ ..++++.++.+||.-+
T Consensus 248 ~IiV~TPgrL~~~l~~~~~~l~~v~~lViDE 278 (518)
T PLN00206 248 ELIVGTPGRLIDLLSKHDIELDNVSVLVLDE 278 (518)
T ss_pred CEEEECHHHHHHHHHcCCccchheeEEEeec
Confidence 89999953110 02 3466777888777543
No 244
>PF00581 Rhodanese: Rhodanese-like domain This Prosite entry represents a subset of this family.; InterPro: IPR001763 Rhodanese, a sulphurtransferase involved in cyanide detoxification (see IPR001307 from INTERPRO) shares evolutionary relationship with a large family of proteins [], including Cdc25 phosphatase catalytic domain. non-catalytic domains of eukaryotic dual-specificity MAPK-phosphatases. non-catalytic domains of yeast PTP-type MAPK-phosphatases. non-catalytic domains of yeast Ubp4, Ubp5, Ubp7. non-catalytic domains of mammalian Ubp-Y. Drosophila heat shock protein HSP-67BB. several bacterial cold-shock and phage shock proteins. plant senescence associated proteins. catalytic and non-catalytic domains of rhodanese (see IPR001307 from INTERPRO). Rhodanese has an internal duplication. This domain is found as a single copy in other proteins, including phosphatases and ubiquitin C-terminal hydrolases [].; PDB: 2J6P_D 2FSX_A 1UAR_A 1OKG_A 1GMX_A 1GN0_A 3NTD_B 3NTA_B 3NT6_A 1C25_A ....
Probab=62.76 E-value=21 Score=25.16 Aligned_cols=40 Identities=15% Similarity=0.146 Sum_probs=27.7
Q ss_pred CCCCCcEEEEeCchHHHHHHHHH-----HhccCCceEEEecCCCC
Q 028124 50 RRPGLPMIVCCSSRDELDAVCSA-----VSNLADISFSSLHSDLA 89 (213)
Q Consensus 50 ~~~~~~~IIF~~~~~~~~~l~~~-----L~~~~~~~~~~lhg~~~ 89 (213)
.....++|+||.+.......+.. |...|.-.+..+.|++.
T Consensus 64 ~~~~~~iv~yc~~~~~~~~~~~~~~~~~l~~~g~~~v~~l~GG~~ 108 (113)
T PF00581_consen 64 IDKDKDIVFYCSSGWRSGSAAAARVAWILKKLGFKNVYILDGGFE 108 (113)
T ss_dssp STTTSEEEEEESSSCHHHHHHHHHHHHHHHHTTTSSEEEETTHHH
T ss_pred ccccccceeeeecccccchhHHHHHHHHHHHcCCCCEEEecChHH
Confidence 34567899999665555555554 77777448888999863
No 245
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=62.53 E-value=55 Score=32.98 Aligned_cols=92 Identities=14% Similarity=0.122 Sum_probs=58.1
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhcccccccccccccCCCCCcCCCCCCceeEE
Q 028124 52 PGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMI 131 (213)
Q Consensus 52 ~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~~~~~~~~~~~~~~~~~~~~~~~~iL 131 (213)
..++=+|.|++-.-=.|+.+.=+-.+.+++..+||. +.+|.++-..+..+. .+.+||
T Consensus 447 ~~gpHLVVvPsSTleNWlrEf~kwCPsl~Ve~YyGS--q~ER~~lR~~i~~~~---------------------~~ydVl 503 (941)
T KOG0389|consen 447 NPGPHLVVVPSSTLENWLREFAKWCPSLKVEPYYGS--QDERRELRERIKKNK---------------------DDYDVL 503 (941)
T ss_pred CCCCcEEEecchhHHHHHHHHHHhCCceEEEeccCc--HHHHHHHHHHHhccC---------------------CCccEE
Confidence 356777778874333344333333477899999996 589999999988863 358999
Q ss_pred EEeCCCCCcCcCCC-C------CCCCCEEEEecC----CCChHHHHHhhc
Q 028124 132 VVTDACLPLLSSGE-S------AISARVLINYEL----PTKKETYIRRMT 170 (213)
Q Consensus 132 V~Td~~~~~~~rGl-d------~~~v~~VI~yd~----P~~~~~yi~R~G 170 (213)
|+|-- ++.+- | ....++||.-.- -...+.|-|-+.
T Consensus 504 lTTY~----la~~~kdDRsflk~~~~n~viyDEgHmLKN~~SeRy~~LM~ 549 (941)
T KOG0389|consen 504 LTTYN----LAASSKDDRSFLKNQKFNYVIYDEGHMLKNRTSERYKHLMS 549 (941)
T ss_pred EEEee----cccCChHHHHHHHhccccEEEecchhhhhccchHHHHHhcc
Confidence 99987 43332 1 134555654221 135677777654
No 246
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=62.30 E-value=79 Score=25.18 Aligned_cols=64 Identities=16% Similarity=0.285 Sum_probs=47.0
Q ss_pred HHHHHHHHHhhcCCCCCCcEEEEeCchHHHHHHHHHHhcc-CCceEEE-ecCCCCHHHHHHHHHHHhcc
Q 028124 37 ETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNL-ADISFSS-LHSDLAETERTLILEEFRHT 103 (213)
Q Consensus 37 ~~L~~ll~~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~-~~~~~~~-lhg~~~~~~R~~~l~~Fr~g 103 (213)
+++..+++... .++.++.++-.+...++.+++.|++. +++.++. .||-+...+...++++....
T Consensus 33 dl~~~ll~~~~---~~~~~v~llG~~~~~~~~~~~~l~~~yp~l~i~g~~~g~~~~~~~~~i~~~I~~~ 98 (171)
T cd06533 33 DLMPALLELAA---QKGLRVFLLGAKPEVLEKAAERLRARYPGLKIVGYHHGYFGPEEEEEIIERINAS 98 (171)
T ss_pred HHHHHHHHHHH---HcCCeEEEECCCHHHHHHHHHHHHHHCCCcEEEEecCCCCChhhHHHHHHHHHHc
Confidence 44555555421 24678999999999999999888765 5577776 67888877777788888775
No 247
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=61.99 E-value=26 Score=33.91 Aligned_cols=51 Identities=16% Similarity=0.183 Sum_probs=44.6
Q ss_pred CCcEEEEeCchHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhccc
Q 028124 53 GLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTA 104 (213)
Q Consensus 53 ~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~lhg~~~~~~R~~~l~~Fr~g~ 104 (213)
.+-+||-.+=.+-.+.=.+.|...| +.+..+++.++.++|..+++++..|.
T Consensus 57 ~G~TLVVSPLiSLM~DQV~~l~~~G-i~A~~lnS~l~~~e~~~v~~~l~~g~ 107 (590)
T COG0514 57 EGLTLVVSPLISLMKDQVDQLEAAG-IRAAYLNSTLSREERQQVLNQLKSGQ 107 (590)
T ss_pred CCCEEEECchHHHHHHHHHHHHHcC-ceeehhhcccCHHHHHHHHHHHhcCc
Confidence 3578888888777777778888888 99999999999999999999999985
No 248
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=60.83 E-value=24 Score=37.84 Aligned_cols=80 Identities=14% Similarity=0.140 Sum_probs=57.3
Q ss_pred CCcEEEEeCchHHHHHHHHHHhc---------------cCCceEEEecCCCCHHHHHHHHHHHhcccccccccccccCCC
Q 028124 53 GLPMIVCCSSRDELDAVCSAVSN---------------LADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGD 117 (213)
Q Consensus 53 ~~~~IIF~~~~~~~~~l~~~L~~---------------~~~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~~~~~~~~~~~~ 117 (213)
+.++|+.++++.-+..+.+.|+. ..++++...||+.+..+|.+.++ +
T Consensus 37 ~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V~vrtGDt~~~eR~rll~---~--------------- 98 (1490)
T PRK09751 37 TSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRVGIRTGDTPAQERSKLTR---N--------------- 98 (1490)
T ss_pred CCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEEEEEECCCCHHHHHHHhc---C---------------
Confidence 56899999999998888877642 11378999999999999865433 2
Q ss_pred CCcCCCCCCceeEEEEeCCCCCcC--cCC-CCCCCCCEEEEecCC
Q 028124 118 ESETGKDEHKSHMIVVTDACLPLL--SSG-ESAISARVLINYELP 159 (213)
Q Consensus 118 ~~~~~~~~~~~~iLV~Td~~~~~~--~rG-ld~~~v~~VI~yd~P 159 (213)
+.+|||+|+-.+-.+ .++ ..+.++++||--++.
T Consensus 99 ---------ppdILVTTPEsL~~LLtsk~r~~L~~Vr~VIVDE~H 134 (1490)
T PRK09751 99 ---------PPDILITTPESLYLMLTSRARETLRGVETVIIDEVH 134 (1490)
T ss_pred ---------CCCEEEecHHHHHHHHhhhhhhhhccCCEEEEecHH
Confidence 278999998643222 222 357889999875543
No 249
>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional
Probab=59.83 E-value=23 Score=30.52 Aligned_cols=38 Identities=18% Similarity=0.186 Sum_probs=31.7
Q ss_pred CCCCcEEEEeCchHHHHHHHHHHhccCCceEEEecCCC
Q 028124 51 RPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDL 88 (213)
Q Consensus 51 ~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~lhg~~ 88 (213)
.+.+++|+||++-.++..++..|...|.-.+..+.|++
T Consensus 229 ~~~~~ii~yC~~G~~A~~~~~~l~~~G~~~v~~y~Gs~ 266 (281)
T PRK11493 229 SFDRPIIASCGSGVTAAVVVLALATLDVPNVKLYDGAW 266 (281)
T ss_pred CCCCCEEEECCcHHHHHHHHHHHHHcCCCCceeeCCCH
Confidence 45678999999999999999999888844578888885
No 250
>PRK05320 rhodanese superfamily protein; Provisional
Probab=59.48 E-value=21 Score=30.77 Aligned_cols=39 Identities=8% Similarity=0.173 Sum_probs=33.3
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhccCCceEEEecCCCCH
Q 028124 52 PGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAE 90 (213)
Q Consensus 52 ~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~lhg~~~~ 90 (213)
+.+++++||.+-.+++..+..|++.|.-.+..+.|++..
T Consensus 174 kdk~IvvyC~~G~Rs~~Aa~~L~~~Gf~~V~~L~GGi~~ 212 (257)
T PRK05320 174 AGKTVVSFCTGGIRCEKAAIHMQEVGIDNVYQLEGGILK 212 (257)
T ss_pred CCCeEEEECCCCHHHHHHHHHHHHcCCcceEEeccCHHH
Confidence 468899999999999999999999984358889999844
No 251
>PRK06646 DNA polymerase III subunit chi; Provisional
Probab=57.85 E-value=47 Score=26.41 Aligned_cols=52 Identities=8% Similarity=0.102 Sum_probs=39.2
Q ss_pred CcchHHHHHHHHHHHhhcCCCCCCcEEEEeCchHHHHHHHHHHhccCCceEEEecC
Q 028124 31 RLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHS 86 (213)
Q Consensus 31 ~~~~K~~~L~~ll~~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~lhg 86 (213)
....+...++.|+++... .+.+++|.|.....++.|=+.|=... -....=|+
T Consensus 10 ~~~~~~~~acrL~~Ka~~---~G~rv~I~~~d~~~~~~LD~~LWtf~-~~SFlPH~ 61 (154)
T PRK06646 10 SDELLLKSILLLIEKCYY---SDLKSVILTADADQQEMLNKNLWTYS-RKQFIPHG 61 (154)
T ss_pred CCChHHHHHHHHHHHHHH---cCCEEEEEcCCHHHHHHHHHHhcCCC-CCCCCCCC
Confidence 344599999999987544 68999999999999999988885543 13444555
No 252
>TIGR02981 phageshock_pspE phage shock operon rhodanese PspE. Members of this very narrowly defined protein family are proteins active as rhodanese (EC 2.8.1.1) and found in the extended variants of the phage shock protein (psp operon) in Escherichia coli and a few closely related species. Note that the designation phage shock protein PspE has been applied, incorrectly, in many instances where the genome lacks the phage shock regulon entirely.
Probab=57.69 E-value=40 Score=24.49 Aligned_cols=36 Identities=3% Similarity=0.110 Sum_probs=27.2
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhccCCceEEEecCCC
Q 028124 52 PGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDL 88 (213)
Q Consensus 52 ~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~lhg~~ 88 (213)
...+++++|++-..+...+..|...| +.....-|++
T Consensus 57 ~~~~vvlyC~~G~rS~~aa~~L~~~G-~~~v~~~GG~ 92 (101)
T TIGR02981 57 KNDTVKLYCNAGRQSGMAKDILLDMG-YTHAENAGGI 92 (101)
T ss_pred CCCeEEEEeCCCHHHHHHHHHHHHcC-CCeEEecCCH
Confidence 45688999999888888899999888 4433334764
No 253
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=57.45 E-value=96 Score=24.66 Aligned_cols=65 Identities=14% Similarity=0.247 Sum_probs=47.5
Q ss_pred HHHHHHHHHHhhcCCCCCCcEEEEeCchHHHHHHHHHHhcc-CCceEEE-ecCCCCHHHHHHHHHHHhcc
Q 028124 36 METLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNL-ADISFSS-LHSDLAETERTLILEEFRHT 103 (213)
Q Consensus 36 ~~~L~~ll~~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~-~~~~~~~-lhg~~~~~~R~~~l~~Fr~g 103 (213)
.+++.++++... ..+.++.++-.+...++.++..|+.. +++.++. .||-+++.+...+++..+..
T Consensus 34 ~dl~~~l~~~~~---~~~~~ifllG~~~~~~~~~~~~l~~~yP~l~ivg~~~g~f~~~~~~~i~~~I~~~ 100 (172)
T PF03808_consen 34 SDLFPDLLRRAE---QRGKRIFLLGGSEEVLEKAAANLRRRYPGLRIVGYHHGYFDEEEEEAIINRINAS 100 (172)
T ss_pred HHHHHHHHHHHH---HcCCeEEEEeCCHHHHHHHHHHHHHHCCCeEEEEecCCCCChhhHHHHHHHHHHc
Confidence 345555555421 24678888888999999999999865 4577764 55768888888999988875
No 254
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=57.06 E-value=19 Score=31.56 Aligned_cols=75 Identities=13% Similarity=0.244 Sum_probs=51.9
Q ss_pred CcEEEEeCchHHHHHHHHHHhc----cCCceEEEecCCCCHHHHHHHHHHHhcccccccccccccCCCCCcCCCCCCcee
Q 028124 54 LPMIVCCSSRDELDAVCSAVSN----LADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSH 129 (213)
Q Consensus 54 ~~~IIF~~~~~~~~~l~~~L~~----~~~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (213)
-.++|.|+|+.-|-.+.+.... .+++++..+.|+++-+...++++. - ..
T Consensus 111 vsvlvmchtrelafqi~~ey~rfskymP~vkvaVFfGG~~Ikkdee~lk~---~------------------------Ph 163 (387)
T KOG0329|consen 111 VSVLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLFIKKDEELLKN---C------------------------PH 163 (387)
T ss_pred EEEEEEeccHHHHHHHHHHHHHHHhhCCCceEEEEEcceeccccHHHHhC---C------------------------Ce
Confidence 4567888998888877665533 267899999999987776666654 2 67
Q ss_pred EEEEeCCCCCcC--cCCCCCCCCCEEEE
Q 028124 130 MIVVTDACLPLL--SSGESAISARVLIN 155 (213)
Q Consensus 130 iLV~Td~~~~~~--~rGld~~~v~~VI~ 155 (213)
|+|.|+-++-.+ .+.+++.++.+-|.
T Consensus 164 ivVgTPGrilALvr~k~l~lk~vkhFvl 191 (387)
T KOG0329|consen 164 IVVGTPGRILALVRNRSLNLKNVKHFVL 191 (387)
T ss_pred EEEcCcHHHHHHHHhccCchhhcceeeh
Confidence 999998532223 45566667766553
No 255
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=56.75 E-value=52 Score=24.52 Aligned_cols=50 Identities=14% Similarity=0.145 Sum_probs=27.2
Q ss_pred CCceEEEEEecCcchHHHHHHHHHHHhhcCCCCCCcEEEEeCchHHHHHHHHH
Q 028124 20 SQPRHFYVAVDRLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSA 72 (213)
Q Consensus 20 ~~i~~~~~~~~~~~~K~~~L~~ll~~~~~~~~~~~~~IIF~~~~~~~~~l~~~ 72 (213)
-++...++.+.......+.+..+.+.+.. ..+|+++||.|-.++..|+..
T Consensus 56 ~Gl~y~~iPv~~~~~~~~~v~~f~~~l~~---~~~Pvl~hC~sG~Ra~~l~~l 105 (110)
T PF04273_consen 56 LGLQYVHIPVDGGAITEEDVEAFADALES---LPKPVLAHCRSGTRASALWAL 105 (110)
T ss_dssp CT-EEEE----TTT--HHHHHHHHHHHHT---TTTSEEEE-SCSHHHHHHHHH
T ss_pred cCCeEEEeecCCCCCCHHHHHHHHHHHHh---CCCCEEEECCCChhHHHHHHH
Confidence 56777777777665444444444443322 357999999999988877554
No 256
>PRK13767 ATP-dependent helicase; Provisional
Probab=55.80 E-value=32 Score=34.79 Aligned_cols=108 Identities=13% Similarity=0.178 Sum_probs=63.3
Q ss_pred EEEEEecCcchHHHH-HHHHHHHhhcC-----CCCCCcEEEEeCchHHHHHHHHHHh---------------ccCCceEE
Q 028124 24 HFYVAVDRLQFKMET-LVELLHLVVAG-----RRPGLPMIVCCSSRDELDAVCSAVS---------------NLADISFS 82 (213)
Q Consensus 24 ~~~~~~~~~~~K~~~-L~~ll~~~~~~-----~~~~~~~IIF~~~~~~~~~l~~~L~---------------~~~~~~~~ 82 (213)
+.++..+...=|... +.-++..+... ..++.++|+.+++++-+..+.+.|. ..+.+.+.
T Consensus 49 nvli~APTGSGKTlaa~Lpil~~l~~~~~~~~~~~~~~~LyIsPtraLa~di~~~L~~~l~~i~~~~~~~g~~~~~i~v~ 128 (876)
T PRK13767 49 NVLISSPTGSGKTLAAFLAIIDELFRLGREGELEDKVYCLYVSPLRALNNDIHRNLEEPLTEIREIAKERGEELPEIRVA 128 (876)
T ss_pred CEEEECCCCCcHHHHHHHHHHHHHHhhccccCCCCCeEEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCeeEE
Confidence 355555554435443 33344333210 1234579999999998887765442 11236889
Q ss_pred EecCCCCHHHHHHHHHHHhcccccccccccccCCCCCcCCCCCCceeEEEEeCCCCCcCcCC----CCCCCCCEEEEecC
Q 028124 83 SLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSG----ESAISARVLINYEL 158 (213)
Q Consensus 83 ~lhg~~~~~~R~~~l~~Fr~g~~~~~~~~~~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~rG----ld~~~v~~VI~yd~ 158 (213)
..||+.+..+|.+.+. ++ .+|||+|+-.+-.+-.. -.+.++++||.-+.
T Consensus 129 v~~Gdt~~~~r~~~l~---~~------------------------p~IlVtTPE~L~~ll~~~~~~~~l~~l~~VVIDE~ 181 (876)
T PRK13767 129 IRTGDTSSYEKQKMLK---KP------------------------PHILITTPESLAILLNSPKFREKLRTVKWVIVDEI 181 (876)
T ss_pred EEcCCCCHHHHHHHHh---CC------------------------CCEEEecHHHHHHHhcChhHHHHHhcCCEEEEech
Confidence 9999999888765443 32 78999998422111111 13567888886543
No 257
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=55.48 E-value=15 Score=34.45 Aligned_cols=64 Identities=16% Similarity=0.219 Sum_probs=47.3
Q ss_pred CCCCCcEEEEeCchHHHHHHHHHHhcc-----CCceEEEecCCCCHHHHHHHHHHHhcccccccccccccCCCCCcCCCC
Q 028124 50 RRPGLPMIVCCSSRDELDAVCSAVSNL-----ADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKD 124 (213)
Q Consensus 50 ~~~~~~~IIF~~~~~~~~~l~~~L~~~-----~~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~~~~~~~~~~~~~~~~~~~ 124 (213)
...+...+|.++|+.-|..++..+.+. .+++++-+.++|+.+.-. -+..+
T Consensus 90 ~e~~~sa~iLvPTkEL~qQvy~viekL~~~c~k~lr~~nl~s~~sdsv~~----~~L~d--------------------- 144 (569)
T KOG0346|consen 90 GEQGPSAVILVPTKELAQQVYKVIEKLVEYCSKDLRAINLASSMSDSVNS----VALMD--------------------- 144 (569)
T ss_pred ccccceeEEEechHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchHHHH----HHHcc---------------------
Confidence 445678999999999999888877654 146778888888876644 33443
Q ss_pred CCceeEEEEeCCCCCc
Q 028124 125 EHKSHMIVVTDACLPL 140 (213)
Q Consensus 125 ~~~~~iLV~Td~~~~~ 140 (213)
...|+|+|+.|++.
T Consensus 145 --~pdIvV~TP~~ll~ 158 (569)
T KOG0346|consen 145 --LPDIVVATPAKLLR 158 (569)
T ss_pred --CCCeEEeChHHHHH
Confidence 37899999987543
No 258
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=54.99 E-value=65 Score=32.66 Aligned_cols=121 Identities=17% Similarity=0.244 Sum_probs=71.1
Q ss_pred eEEEEEecCcchHHH-HHHHHHHHhhcCCCCCCcEEEEeCchHHHH----HHHHHHhccC-CceEEEecCCCCHHHHHHH
Q 028124 23 RHFYVAVDRLQFKME-TLVELLHLVVAGRRPGLPMIVCCSSRDELD----AVCSAVSNLA-DISFSSLHSDLAETERTLI 96 (213)
Q Consensus 23 ~~~~~~~~~~~~K~~-~L~~ll~~~~~~~~~~~~~IIF~~~~~~~~----~l~~~L~~~~-~~~~~~lhg~~~~~~R~~~ 96 (213)
++.++..+...=|-+ ++.-+++.+.. .+..+.|++.++++-+. ++.+.+...| .+.+..++|+.++++|.
T Consensus 86 ~~vvVtTgTgSGKTe~FllPIld~~l~--~~~a~AL~lYPtnALa~DQ~~rl~~~~~~~~~~v~~~~y~Gdt~~~~r~-- 161 (851)
T COG1205 86 RNVVVTTGTGSGKTESFLLPILDHLLR--DPSARALLLYPTNALANDQAERLRELISDLPGKVTFGRYTGDTPPEERR-- 161 (851)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHhh--CcCccEEEEechhhhHhhHHHHHHHHHHhCCCcceeeeecCCCChHHHH--
Confidence 455555554433443 33445555443 34558899999987554 5555555554 57899999999999987
Q ss_pred HHHHhcccccccccccccCCCCCcCCCCCCceeEEEEeCCCCCc-CcCCCC-----CCCCCEEEEecCCC-------ChH
Q 028124 97 LEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPL-LSSGES-----AISARVLINYELPT-------KKE 163 (213)
Q Consensus 97 l~~Fr~g~~~~~~~~~~~~~~~~~~~~~~~~~~iLV~Td~~~~~-~~rGld-----~~~v~~VI~yd~P~-------~~~ 163 (213)
.+..+ +.+||++|..=+=. +-|.-| +.+..+||--++.. ++.
T Consensus 162 --~~~~~-----------------------pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElHtYrGv~GS~vA 216 (851)
T COG1205 162 --AIIRN-----------------------PPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELHTYRGVQGSEVA 216 (851)
T ss_pred --HHHhC-----------------------CCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEecceeccccchhHHH
Confidence 44443 48899998741000 122222 23477777655443 455
Q ss_pred HHHHhhccc
Q 028124 164 TYIRRMTTC 172 (213)
Q Consensus 164 ~yi~R~GR~ 172 (213)
-.+-|..|.
T Consensus 217 ~llRRL~~~ 225 (851)
T COG1205 217 LLLRRLLRR 225 (851)
T ss_pred HHHHHHHHH
Confidence 556666653
No 259
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=53.87 E-value=1.2e+02 Score=29.10 Aligned_cols=119 Identities=13% Similarity=0.181 Sum_probs=77.9
Q ss_pred CCcEEEEeCchHHHHHHHHHHhcc---CCceEEEecCCCCHHHHHHHHHHHhcccccccccccccCCCCCcCCCCCCcee
Q 028124 53 GLPMIVCCSSRDELDAVCSAVSNL---ADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSH 129 (213)
Q Consensus 53 ~~~~IIF~~~~~~~~~l~~~L~~~---~~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (213)
++++|+-.+|+--+..-+..+.+. +.-....++|..++++|... |.. .+
T Consensus 58 ~~kvlfLAPTKPLV~Qh~~~~~~v~~ip~~~i~~ltGev~p~~R~~~---w~~-------------------------~k 109 (542)
T COG1111 58 GGKVLFLAPTKPLVLQHAEFCRKVTGIPEDEIAALTGEVRPEEREEL---WAK-------------------------KK 109 (542)
T ss_pred CCeEEEecCCchHHHHHHHHHHHHhCCChhheeeecCCCChHHHHHH---Hhh-------------------------CC
Confidence 448999999998887777777653 22368899999999999754 444 67
Q ss_pred EEEEeC------CCCCcCcCCCCCCCCCEEEEecCCCChH--HHHHhhccc--cCCCCeEEEEE--eCchhHHHHHHHHH
Q 028124 130 MIVVTD------ACLPLLSSGESAISARVLINYELPTKKE--TYIRRMTTC--LAADGSVINIV--VGGEVVTLRSMEES 197 (213)
Q Consensus 130 iLV~Td------~~~~~~~rGld~~~v~~VI~yd~P~~~~--~yi~R~GR~--~~~~g~~i~~~--~~~e~~~~~~le~~ 197 (213)
|.|+|+ + .+-=+|+.++.++|.-...+..- .|..=+-.. ..+.-.++-+- ...+....+++.+.
T Consensus 110 VfvaTPQvveNDl----~~Grid~~dv~~lifDEAHRAvGnyAYv~Va~~y~~~~k~~~ilgLTASPGs~~ekI~eV~~n 185 (542)
T COG1111 110 VFVATPQVVENDL----KAGRIDLDDVSLLIFDEAHRAVGNYAYVFVAKEYLRSAKNPLILGLTASPGSDLEKIQEVVEN 185 (542)
T ss_pred EEEeccHHHHhHH----hcCccChHHceEEEechhhhccCcchHHHHHHHHHHhccCceEEEEecCCCCCHHHHHHHHHh
Confidence 889986 4 45557999999999876665432 232222211 12222333333 34578888888888
Q ss_pred hccccc
Q 028124 198 LGLIVA 203 (213)
Q Consensus 198 l~~~~~ 203 (213)
||.+--
T Consensus 186 LgIe~v 191 (542)
T COG1111 186 LGIEKV 191 (542)
T ss_pred CCcceE
Confidence 876533
No 260
>PRK01415 hypothetical protein; Validated
Probab=53.62 E-value=19 Score=30.96 Aligned_cols=40 Identities=10% Similarity=0.167 Sum_probs=34.1
Q ss_pred CCCCcEEEEeCchHHHHHHHHHHhccCCceEEEecCCCCH
Q 028124 51 RPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAE 90 (213)
Q Consensus 51 ~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~lhg~~~~ 90 (213)
.+.+++++||.+-..++..+..|++.|.-.+..|.|++..
T Consensus 169 ~k~k~Iv~yCtgGiRs~kAa~~L~~~Gf~~Vy~L~GGi~~ 208 (247)
T PRK01415 169 LKGKKIAMVCTGGIRCEKSTSLLKSIGYDEVYHLKGGILQ 208 (247)
T ss_pred cCCCeEEEECCCChHHHHHHHHHHHcCCCcEEEechHHHH
Confidence 4568999999999999999999999985458889999743
No 261
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=53.01 E-value=1.2e+02 Score=24.31 Aligned_cols=92 Identities=14% Similarity=0.119 Sum_probs=55.7
Q ss_pred HHHHHHHHHHhhcCCCCCCcEEEEeCchHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhcccccccccccccC
Q 028124 36 METLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQS 115 (213)
Q Consensus 36 ~~~L~~ll~~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~~~~~~~~~~ 115 (213)
.....++++.+.. ...+++++|.-...-....++..|...| ..+...+... ++. .+..+.
T Consensus 28 ~~a~v~l~~~~~~-~l~gk~vlViG~G~~~G~~~a~~L~~~g-~~V~v~~r~~--~~l---~~~l~~------------- 87 (168)
T cd01080 28 PAGILELLKRYGI-DLAGKKVVVVGRSNIVGKPLAALLLNRN-ATVTVCHSKT--KNL---KEHTKQ------------- 87 (168)
T ss_pred HHHHHHHHHHcCC-CCCCCEEEEECCcHHHHHHHHHHHhhCC-CEEEEEECCc--hhH---HHHHhh-------------
Confidence 3445566665432 3456777777665444556999998887 6777777653 121 222222
Q ss_pred CCCCcCCCCCCceeEEEEeCCCCCcCcCCC---CCCCCCEEEEecCCCChH
Q 028124 116 GDESETGKDEHKSHMIVVTDACLPLLSSGE---SAISARVLINYELPTKKE 163 (213)
Q Consensus 116 ~~~~~~~~~~~~~~iLV~Td~~~~~~~rGl---d~~~v~~VI~yd~P~~~~ 163 (213)
.+++|++-. ...=+ ++.+-.++|+...|++.+
T Consensus 88 ------------aDiVIsat~----~~~ii~~~~~~~~~viIDla~prdvd 122 (168)
T cd01080 88 ------------ADIVIVAVG----KPGLVKGDMVKPGAVVIDVGINRVPD 122 (168)
T ss_pred ------------CCEEEEcCC----CCceecHHHccCCeEEEEccCCCccc
Confidence 677777654 32222 234456899999999887
No 262
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=52.16 E-value=57 Score=33.28 Aligned_cols=45 Identities=7% Similarity=0.094 Sum_probs=36.6
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhcc----CCceEEEecCCCCHHHHHHHH
Q 028124 52 PGLPMIVCCSSRDELDAVCSAVSNL----ADISFSSLHSDLAETERTLIL 97 (213)
Q Consensus 52 ~~~~~IIF~~~~~~~~~l~~~L~~~----~~~~~~~lhg~~~~~~R~~~l 97 (213)
.+..+.|.++|..-|...++++... | +.+..++|+++..+|...+
T Consensus 122 ~G~~V~VvTpn~yLA~qd~e~m~~l~~~lG-Ltv~~i~gg~~~~~r~~~y 170 (896)
T PRK13104 122 SGRGVHIVTVNDYLAKRDSQWMKPIYEFLG-LTVGVIYPDMSHKEKQEAY 170 (896)
T ss_pred cCCCEEEEcCCHHHHHHHHHHHHHHhcccC-ceEEEEeCCCCHHHHHHHh
Confidence 3567999999999888888887653 5 8899999999998886554
No 263
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=51.44 E-value=53 Score=31.47 Aligned_cols=85 Identities=16% Similarity=0.152 Sum_probs=54.9
Q ss_pred CCCCcEEEEeCchHHHHHHHHHHhcc---CCceEEEecCCCCHHHHHHHHHHHhcccccccccccccCCCCCcCCCCCCc
Q 028124 51 RPGLPMIVCCSSRDELDAVCSAVSNL---ADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHK 127 (213)
Q Consensus 51 ~~~~~~IIF~~~~~~~~~l~~~L~~~---~~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~~~~~~~~~~~~~~~~~~~~~~ 127 (213)
-+--+++|.++++.-+-.++..+... .++.+..+.|.-+.+.-. ++..+. +.+++
T Consensus 213 v~~LRavVivPtr~L~~QV~~~f~~~~~~tgL~V~~~sgq~sl~~E~---~qL~~~-------------------~~~~~ 270 (620)
T KOG0350|consen 213 VKRLRAVVIVPTRELALQVYDTFKRLNSGTGLAVCSLSGQNSLEDEA---RQLASD-------------------PPECR 270 (620)
T ss_pred ccceEEEEEeeHHHHHHHHHHHHHHhccCCceEEEecccccchHHHH---HHHhcC-------------------CCccc
Confidence 34589999999999999998888765 125666666654433221 122221 12246
Q ss_pred eeEEEEeCCCCCc---CcCCCCCCCCCEEEEec
Q 028124 128 SHMIVVTDACLPL---LSSGESAISARVLINYE 157 (213)
Q Consensus 128 ~~iLV~Td~~~~~---~~rGld~~~v~~VI~yd 157 (213)
++|||+|+..|== ...|+|+.+.+++|.-.
T Consensus 271 ~DIlVaTPGRLVDHl~~~k~f~Lk~LrfLVIDE 303 (620)
T KOG0350|consen 271 IDILVATPGRLVDHLNNTKSFDLKHLRFLVIDE 303 (620)
T ss_pred cceEEcCchHHHHhccCCCCcchhhceEEEech
Confidence 8999999953100 16788888888877644
No 264
>PLN02723 3-mercaptopyruvate sulfurtransferase
Probab=51.41 E-value=36 Score=30.07 Aligned_cols=38 Identities=8% Similarity=0.184 Sum_probs=31.2
Q ss_pred CCCCcEEEEeCchHHHHHHHHHHhccCCceEEEecCCC
Q 028124 51 RPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDL 88 (213)
Q Consensus 51 ~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~lhg~~ 88 (213)
.+.+++|+||++-.++..++..|+..|.-.+..+.|++
T Consensus 267 ~~~~~iv~yC~sG~~A~~~~~~L~~~G~~~v~~YdGs~ 304 (320)
T PLN02723 267 SLDSPIVASCGTGVTACILALGLHRLGKTDVPVYDGSW 304 (320)
T ss_pred CCCCCEEEECCcHHHHHHHHHHHHHcCCCCeeEeCCCH
Confidence 45689999999988888888888888844577888886
No 265
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=50.73 E-value=67 Score=32.10 Aligned_cols=45 Identities=13% Similarity=0.091 Sum_probs=35.9
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhcc----CCceEEEecCCCCHHHHHHHH
Q 028124 52 PGLPMIVCCSSRDELDAVCSAVSNL----ADISFSSLHSDLAETERTLIL 97 (213)
Q Consensus 52 ~~~~~IIF~~~~~~~~~l~~~L~~~----~~~~~~~lhg~~~~~~R~~~l 97 (213)
.+.++.|.++|..-|...++++... | +++..+.|+++.++|...+
T Consensus 96 ~G~~V~VvTpt~~LA~qdae~~~~l~~~LG-Lsv~~i~g~~~~~~r~~~y 144 (745)
T TIGR00963 96 TGKGVHVVTVNDYLAQRDAEWMGQVYRFLG-LSVGLILSGMSPEERREAY 144 (745)
T ss_pred hCCCEEEEcCCHHHHHHHHHHHHHHhccCC-CeEEEEeCCCCHHHHHHhc
Confidence 3568999999999888888877543 5 8999999999987765443
No 266
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=50.13 E-value=81 Score=29.99 Aligned_cols=95 Identities=16% Similarity=0.255 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHhhc--CCCCCC--cEEEEeCchHHHHHHHHHHhc----cCCceEEEecCCCCHHHHHHHHHHHhccccc
Q 028124 35 KMETLVELLHLVVA--GRRPGL--PMIVCCSSRDELDAVCSAVSN----LADISFSSLHSDLAETERTLILEEFRHTAMK 106 (213)
Q Consensus 35 K~~~L~~ll~~~~~--~~~~~~--~~IIF~~~~~~~~~l~~~L~~----~~~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~ 106 (213)
-+++|.-+++-+.. +..++. -.+|..+|+.-|..+.+.+.. ..++.+..+-|+.+-++- ++.|+..
T Consensus 57 TlAFllP~le~i~rr~~~~~~~~vgalIIsPTRELa~QI~~V~~~F~~~l~~l~~~l~vGG~~v~~D---i~~fkee--- 130 (567)
T KOG0345|consen 57 TLAFLLPMLEIIYRREAKTPPGQVGALIISPTRELARQIREVAQPFLEHLPNLNCELLVGGRSVEED---IKTFKEE--- 130 (567)
T ss_pred hhhHHHHHHHHHHhhccCCCccceeEEEecCcHHHHHHHHHHHHHHHHhhhccceEEEecCccHHHH---HHHHHHh---
Confidence 56666666665422 122233 568999999988877665543 256889999999776654 5667775
Q ss_pred ccccccccCCCCCcCCCCCCceeEEEEeCCCCC-cC---cCCCCCCCCCEEEE
Q 028124 107 WNQKVTEQSGDESETGKDEHKSHMIVVTDACLP-LL---SSGESAISARVLIN 155 (213)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~iLV~Td~~~~-~~---~rGld~~~v~~VI~ 155 (213)
..+|||+|+-.|- .+ ..++|+-..+++|.
T Consensus 131 --------------------~~nIlVgTPGRL~di~~~~~~~l~~rsLe~LVL 163 (567)
T KOG0345|consen 131 --------------------GPNILVGTPGRLLDILQREAEKLSFRSLEILVL 163 (567)
T ss_pred --------------------CCcEEEeCchhHHHHHhchhhhccccccceEEe
Confidence 3889999985310 02 34566667777775
No 267
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=49.94 E-value=1.3e+02 Score=29.47 Aligned_cols=107 Identities=12% Similarity=0.164 Sum_probs=67.3
Q ss_pred ecCcchHHHHHHHHHHHhhcCCCCCCcEEEEeCchHHHHHHHHHHhcc-CCceEEEe-----------------------
Q 028124 29 VDRLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNL-ADISFSSL----------------------- 84 (213)
Q Consensus 29 ~~~~~~K~~~L~~ll~~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~-~~~~~~~l----------------------- 84 (213)
+... -|.-++..+++. ...++||.++++..|..|+..|+.. ++-.+..+
T Consensus 37 vtgs-~kt~~~a~~~~~------~~~p~Lvi~~n~~~A~ql~~el~~f~p~~~V~~f~sy~d~y~pe~y~P~~d~~~~k~ 109 (655)
T TIGR00631 37 VTGS-GKTFTMANVIAQ------VNRPTLVIAHNKTLAAQLYNEFKEFFPENAVEYFVSYYDYYQPEAYVPSKDTYIEKD 109 (655)
T ss_pred CCCc-HHHHHHHHHHHH------hCCCEEEEECCHHHHHHHHHHHHHhCCCCeEEEEeeecccCCccccCCCcccccccc
Confidence 4444 488888888776 3478999999999999999999765 43224444
Q ss_pred --cCCCCHHHHHHHHHHHhcccccccccccccCCCCCcCCCCCCceeEEEEeCCCCCcCcCCCC----CCCCCEEEEecC
Q 028124 85 --HSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGES----AISARVLINYEL 158 (213)
Q Consensus 85 --hg~~~~~~R~~~l~~Fr~g~~~~~~~~~~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~rGld----~~~v~~VI~yd~ 158 (213)
.+.--...|..++..+..+. ..|+|+|-.| -.|+- +....+.+.-+-
T Consensus 110 ~~~~~~i~~~R~~al~~L~~~~-----------------------~~ivVasv~~----i~~l~~p~~~~~~~~~l~~G~ 162 (655)
T TIGR00631 110 ASINDEIERLRHSATRSLLERR-----------------------DVIVVASVSC----IYGLGSPEEYLKMVLHLEVGK 162 (655)
T ss_pred CCCChHHHHHHHHHHHHHHhCC-----------------------CeEEEEcHHH----hcCCCCHHHHHhccEEEeCCC
Confidence 11112346778888887753 4477776663 34443 333445555555
Q ss_pred CCChHHHHHhh
Q 028124 159 PTKKETYIRRM 169 (213)
Q Consensus 159 P~~~~~yi~R~ 169 (213)
.-+.+.++.+.
T Consensus 163 ~i~~~~l~~~L 173 (655)
T TIGR00631 163 EIDRRELLRRL 173 (655)
T ss_pred CcCHHHHHHHH
Confidence 55566665544
No 268
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=49.55 E-value=1.6e+02 Score=28.74 Aligned_cols=105 Identities=12% Similarity=0.172 Sum_probs=66.3
Q ss_pred cchHHHHHHHHHHHhhcCCCCCCcEEEEeCchHHHHHHHHHHhcc-CCceEEEe--------------------cCCC--
Q 028124 32 LQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNL-ADISFSSL--------------------HSDL-- 88 (213)
Q Consensus 32 ~~~K~~~L~~ll~~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~-~~~~~~~l--------------------hg~~-- 88 (213)
...|.-++..+++. ...++||-+++...|+.++..|+.. ++-.+..+ +...
T Consensus 42 gs~ka~lia~l~~~------~~r~vLIVt~~~~~A~~l~~dL~~~~~~~~v~~f~s~~~~~~~~~~~P~~d~~~~~~~~~ 115 (652)
T PRK05298 42 GSGKTFTMANVIAR------LQRPTLVLAHNKTLAAQLYSEFKEFFPENAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSI 115 (652)
T ss_pred CcHHHHHHHHHHHH------hCCCEEEEECCHHHHHHHHHHHHHhcCCCeEEEeCChhhccCccccCCCCcccccccCCC
Confidence 33488887777765 2478999999999999999999765 43234444 1111
Q ss_pred ---CHHHHHHHHHHHhcccccccccccccCCCCCcCCCCCCceeEEEEeCCCCCcCcCCCC----CCCCCEEEEecCCCC
Q 028124 89 ---AETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGES----AISARVLINYELPTK 161 (213)
Q Consensus 89 ---~~~~R~~~l~~Fr~g~~~~~~~~~~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~rGld----~~~v~~VI~yd~P~~ 161 (213)
-...|..++.++..+. ..|+|+|-.| + .++- +.+....+.-+-.-+
T Consensus 116 ~~~~~~~R~~~l~~L~~~~-----------------------~~ivv~s~~a---l-~~~~~~~~~~~~~~~l~~G~~i~ 168 (652)
T PRK05298 116 NEEIERLRHSATKSLLERR-----------------------DVIVVASVSC---I-YGLGSPEEYLKMVLSLRVGQEID 168 (652)
T ss_pred ChHHHHHHHHHHHHHHhCC-----------------------CEEEEEcHHH---h-cCCCCHHHHHhceEEEeCCCCcC
Confidence 1346788888888753 4577777664 3 4443 333445555555555
Q ss_pred hHHHHHhh
Q 028124 162 KETYIRRM 169 (213)
Q Consensus 162 ~~~yi~R~ 169 (213)
.+.++.+.
T Consensus 169 ~~~l~~~L 176 (652)
T PRK05298 169 RRELLRRL 176 (652)
T ss_pred HHHHHHHH
Confidence 66665544
No 269
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=48.75 E-value=19 Score=35.59 Aligned_cols=77 Identities=14% Similarity=0.285 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHhhcCCCCCCcEEEEeCchHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhccccccccccccc
Q 028124 35 KMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQ 114 (213)
Q Consensus 35 K~~~L~~ll~~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~~~~~~~~~ 114 (213)
|+..|...++.+. ..+.+++||..-.+..+.|-.++...+ ....+.|.....+|+....+|....
T Consensus 616 k~~~l~~~~~~l~---~~ghrvl~~~q~~~~ldlled~~~~~~--~~~r~dG~~~~~~rq~ai~~~n~~~---------- 680 (696)
T KOG0383|consen 616 KLTLLLKMLKKLK---SSGHRVLIFSQMIHMLDLLEDYLTYEG--KYERIDGPITGPERQAAIDRFNAPG---------- 680 (696)
T ss_pred HHHHHHHHHHHHH---hcchhhHHHHHHHHHHHHhHHHHhccC--cceeccCCccchhhhhhccccCCCC----------
Confidence 7778888887753 478999999999999999999998775 7788999999999999999998642
Q ss_pred CCCCCcCCCCCCceeEEEEeCC
Q 028124 115 SGDESETGKDEHKSHMIVVTDA 136 (213)
Q Consensus 115 ~~~~~~~~~~~~~~~iLV~Td~ 136 (213)
+...-.|.+|.+
T Consensus 681 ----------~~~~cfllstra 692 (696)
T KOG0383|consen 681 ----------SNQFCFLLSTRA 692 (696)
T ss_pred ----------ccceEEEeeccc
Confidence 235778889987
No 270
>PF01751 Toprim: Toprim domain; InterPro: IPR006171 This is a conserved region from DNA primase. This corresponds to the Toprim (topoisomerase-primase) domain common to DnaG primases, topoisomerases, OLD family nucleases and RecR/M DNA repair proteins []. Both DnaG motifs IV and V are present in the alignment, the DxD (V) motif may be involved in Mg2+ binding and mutations to the conserved glutamate (IV) completely abolish DnaG type primase activity. DNA primase 2.7.7.6 from EC is a nucleotidyltransferase it synthesizes the oligoribonucleotide primers required for DNA replication on the lagging strand of the replication fork; it can also prime the leading stand and has been implicated in cell division []. This family also includes the atypical archaeal A subunit from type II DNA topoisomerases []. Type II DNA topoisomerases catalyse the relaxation of DNA supercoiling by causing transient double strand breaks.; PDB: 2ZJT_A 3IG0_A 3M4I_A 3NUH_B 1GKU_B 1GL9_C 3PWT_A 1CY4_A 1ECL_A 1CY7_A ....
Probab=48.41 E-value=27 Score=25.06 Aligned_cols=32 Identities=9% Similarity=0.140 Sum_probs=24.4
Q ss_pred EEEEeCchHHHHHHHHHHhccCCceEEEecCCC
Q 028124 56 MIVCCSSRDELDAVCSAVSNLADISFSSLHSDL 88 (213)
Q Consensus 56 ~IIF~~~~~~~~~l~~~L~~~~~~~~~~lhg~~ 88 (213)
.||.+.....+..+++.|.... ..+....|-+
T Consensus 1 ~liIvE~ps~a~~i~~~l~~~~-~~v~~~~Ghl 32 (100)
T PF01751_consen 1 ELIIVEKPSDAKAIAKALGGEE-YIVIATSGHL 32 (100)
T ss_dssp EEEEESSHHHHHHHHHHSSTTT-EEEEEESSSS
T ss_pred CEEEEeCHHHHHHHHHHcCCCC-EEEEEeCCcc
Confidence 3678889999999999997443 5777777754
No 271
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=47.31 E-value=73 Score=30.33 Aligned_cols=59 Identities=12% Similarity=0.276 Sum_probs=39.4
Q ss_pred CCCCcEEEEeCchHHHHHHHHHHhcc----CCceEEEecCCCCHHHHHHHHHHHhcccccccccccccCCCCCcCCCCCC
Q 028124 51 RPGLPMIVCCSSRDELDAVCSAVSNL----ADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEH 126 (213)
Q Consensus 51 ~~~~~~IIF~~~~~~~~~l~~~L~~~----~~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~~~~~~~~~~~~~~~~~~~~~ 126 (213)
.++..+||.|+|+.-|-.++..++.. ..+.+..+-|+-.. ..-.++...+
T Consensus 152 r~~~~vlIi~PTRELA~Q~~~eak~Ll~~h~~~~v~~viGG~~~---~~e~~kl~k~----------------------- 205 (543)
T KOG0342|consen 152 RNGTGVLIICPTRELAMQIFAEAKELLKYHESITVGIVIGGNNF---SVEADKLVKG----------------------- 205 (543)
T ss_pred CCCeeEEEecccHHHHHHHHHHHHHHHhhCCCcceEEEeCCccc---hHHHHHhhcc-----------------------
Confidence 46788999999999887776665543 23566666676432 2233444444
Q ss_pred ceeEEEEeCC
Q 028124 127 KSHMIVVTDA 136 (213)
Q Consensus 127 ~~~iLV~Td~ 136 (213)
+++||||+-
T Consensus 206 -~niliATPG 214 (543)
T KOG0342|consen 206 -CNILIATPG 214 (543)
T ss_pred -ccEEEeCCc
Confidence 889999985
No 272
>PRK00142 putative rhodanese-related sulfurtransferase; Provisional
Probab=46.03 E-value=27 Score=30.96 Aligned_cols=40 Identities=5% Similarity=0.063 Sum_probs=33.7
Q ss_pred CCCCcEEEEeCchHHHHHHHHHHhccCCceEEEecCCCCH
Q 028124 51 RPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAE 90 (213)
Q Consensus 51 ~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~lhg~~~~ 90 (213)
.+.+++++||.+-..++..+.+|...|+-.+..+.|++..
T Consensus 169 ~kdk~IvvyC~~G~Rs~~aa~~L~~~Gf~~V~~L~GGi~~ 208 (314)
T PRK00142 169 LKDKKVVMYCTGGIRCEKASAWMKHEGFKEVYQLEGGIIT 208 (314)
T ss_pred CCcCeEEEECCCCcHHHHHHHHHHHcCCCcEEEecchHHH
Confidence 3568999999999999999999999984458889999743
No 273
>PLN02723 3-mercaptopyruvate sulfurtransferase
Probab=45.99 E-value=42 Score=29.63 Aligned_cols=51 Identities=10% Similarity=-0.016 Sum_probs=35.3
Q ss_pred HHHHHHHHHhhcCCCCCCcEEEEeCch-HHHHHHHHHHhccCCceEEEecCCCC
Q 028124 37 ETLVELLHLVVAGRRPGLPMIVCCSSR-DELDAVCSAVSNLADISFSSLHSDLA 89 (213)
Q Consensus 37 ~~L~~ll~~~~~~~~~~~~~IIF~~~~-~~~~~l~~~L~~~~~~~~~~lhg~~~ 89 (213)
+.|.+++..+ + -.+..++||||.+- ..+.+++..|+..|+-++..|.|+++
T Consensus 89 ~~~~~~l~~~-G-i~~~~~VVvY~~~g~~~a~r~~~~L~~~G~~~V~~LdGG~~ 140 (320)
T PLN02723 89 EAFAAAVSAL-G-IENKDGVVVYDGKGIFSAARVWWMFRVFGHEKVWVLDGGLP 140 (320)
T ss_pred HHHHHHHHHc-C-CCCCCEEEEEcCCCcchHHHHHHHHHHcCCCceEEcCCCHH
Confidence 4556666653 2 23567999999764 34567778888888556889999964
No 274
>PF14417 MEDS: MEDS: MEthanogen/methylotroph, DcmR Sensory domain
Probab=45.51 E-value=1.4e+02 Score=24.09 Aligned_cols=51 Identities=12% Similarity=0.154 Sum_probs=38.7
Q ss_pred eEEEEEecCcchHHHHHHHHHHHhhcCCCCCCcEEEEeCchHHHHHHHHHHhcc
Q 028124 23 RHFYVAVDRLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNL 76 (213)
Q Consensus 23 ~~~~~~~~~~~~K~~~L~~ll~~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~ 76 (213)
.|......+.+.-++.+...++.-. ..+.+|+++++.....+.+.+.|++.
T Consensus 20 ~H~c~~Y~~~~e~~~~~~~Fi~~GL---~~ge~~l~v~~~~~~~~~l~~~L~~~ 70 (191)
T PF14417_consen 20 DHICAFYDDEEELLEVLVPFIREGL---ARGERCLYVAPDPRRVEELRDELRKA 70 (191)
T ss_pred ceEEEEECCHHHHHHHHHHHHHHHH---HCCCeEEEEECCCCCHHHHHHHHHhc
Confidence 6777777777778888888887643 35788999987677788888888543
No 275
>PTZ00424 helicase 45; Provisional
Probab=44.99 E-value=2.2e+02 Score=25.21 Aligned_cols=80 Identities=11% Similarity=0.128 Sum_probs=51.9
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhccC---CceEEEecCCCCHHHHHHHHHHHhcccccccccccccCCCCCcCCCCCCce
Q 028124 52 PGLPMIVCCSSRDELDAVCSAVSNLA---DISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKS 128 (213)
Q Consensus 52 ~~~~~IIF~~~~~~~~~l~~~L~~~~---~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (213)
...++||.++++.-+..+.+.+...+ .+.+..+.|+....+. ++.+..+ .
T Consensus 95 ~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~---~~~~~~~------------------------~ 147 (401)
T PTZ00424 95 NACQALILAPTRELAQQIQKVVLALGDYLKVRCHACVGGTVVRDD---INKLKAG------------------------V 147 (401)
T ss_pred CCceEEEECCCHHHHHHHHHHHHHHhhhcCceEEEEECCcCHHHH---HHHHcCC------------------------C
Confidence 45789999999999888887776542 2566777787654332 3455554 6
Q ss_pred eEEEEeCCCCC--cCcCCCCCCCCCEEEEecC
Q 028124 129 HMIVVTDACLP--LLSSGESAISARVLINYEL 158 (213)
Q Consensus 129 ~iLV~Td~~~~--~~~rGld~~~v~~VI~yd~ 158 (213)
+|+|+|.-.+- ...+.+.+.++++||.-+.
T Consensus 148 ~Ivv~Tp~~l~~~l~~~~~~l~~i~lvViDEa 179 (401)
T PTZ00424 148 HMVVGTPGRVYDMIDKRHLRVDDLKLFILDEA 179 (401)
T ss_pred CEEEECcHHHHHHHHhCCcccccccEEEEecH
Confidence 79999974100 0123456778888776443
No 276
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=43.95 E-value=57 Score=33.53 Aligned_cols=47 Identities=11% Similarity=0.192 Sum_probs=36.8
Q ss_pred CCcEEEEeCchHHHHHHHHHHhcc----CCceEEEecCCCCHHHHHHHHHHHhcc
Q 028124 53 GLPMIVCCSSRDELDAVCSAVSNL----ADISFSSLHSDLAETERTLILEEFRHT 103 (213)
Q Consensus 53 ~~~~IIF~~~~~~~~~l~~~L~~~----~~~~~~~lhg~~~~~~R~~~l~~Fr~g 103 (213)
+.=+||-|+|+.-+..|.+.++++ + +.++..+|+...++ -+.+.+.|
T Consensus 438 GPi~li~aPtrela~QI~r~~~kf~k~l~-ir~v~vygg~~~~~---qiaelkRg 488 (997)
T KOG0334|consen 438 GPIALILAPTRELAMQIHREVRKFLKLLG-IRVVCVYGGSGISQ---QIAELKRG 488 (997)
T ss_pred CceEEEEcCCHHHHHHHHHHHHHHHhhcC-ceEEEecCCccHHH---HHHHHhcC
Confidence 566899999999999988888654 5 88999999865544 46677776
No 277
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=43.76 E-value=1.5e+02 Score=22.96 Aligned_cols=92 Identities=17% Similarity=0.085 Sum_probs=60.6
Q ss_pred HHHHHHHHHHhhcCCCCCCcEEEEeCchHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhcccccccccccccC
Q 028124 36 METLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQS 115 (213)
Q Consensus 36 ~~~L~~ll~~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~~~~~~~~~~ 115 (213)
.+.+.++++.. +....++++.|+-.+....+-++..|.+.+ ..+...|.... .+++.-.
T Consensus 12 ~~a~~~ll~~~-~~~~~gk~v~VvGrs~~vG~pla~lL~~~g-atV~~~~~~t~------~l~~~v~------------- 70 (140)
T cd05212 12 AKAVKELLNKE-GVRLDGKKVLVVGRSGIVGAPLQCLLQRDG-ATVYSCDWKTI------QLQSKVH------------- 70 (140)
T ss_pred HHHHHHHHHHc-CCCCCCCEEEEECCCchHHHHHHHHHHHCC-CEEEEeCCCCc------CHHHHHh-------------
Confidence 44566777663 335678999999999999999999999887 79999997542 1222222
Q ss_pred CCCCcCCCCCCceeEEEEeCCCCCcCcCCCCCCCCCEEEEecCCC
Q 028124 116 GDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPT 160 (213)
Q Consensus 116 ~~~~~~~~~~~~~~iLV~Td~~~~~~~rGld~~~v~~VI~yd~P~ 160 (213)
..+++|+.-.. |-+-.+-.+..=.+||++++..
T Consensus 71 -----------~ADIVvsAtg~-~~~i~~~~ikpGa~Vidvg~~~ 103 (140)
T cd05212 71 -----------DADVVVVGSPK-PEKVPTEWIKPGATVINCSPTK 103 (140)
T ss_pred -----------hCCEEEEecCC-CCccCHHHcCCCCEEEEcCCCc
Confidence 27788776551 1111222334445788888776
No 278
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=43.58 E-value=44 Score=31.49 Aligned_cols=72 Identities=22% Similarity=0.251 Sum_probs=51.9
Q ss_pred EEEEecCcchHHHHHHHHHHHhhcCCCCCCcEEEEeCchHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhcc
Q 028124 25 FYVAVDRLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHT 103 (213)
Q Consensus 25 ~~~~~~~~~~K~~~L~~ll~~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~lhg~~~~~~R~~~l~~Fr~g 103 (213)
.|+..+... -..|+.-|-.+.. ++=+|||.+-..-...-.+.|.+.. +.+..|++.|+..||.+++.++..-
T Consensus 39 VyVsMPTGa--GKSLCyQLPaL~~----~gITIV~SPLiALIkDQiDHL~~LK-Vp~~SLNSKlSt~ER~ri~~DL~~e 110 (641)
T KOG0352|consen 39 VYVSMPTGA--GKSLCYQLPALVH----GGITIVISPLIALIKDQIDHLKRLK-VPCESLNSKLSTVERSRIMGDLAKE 110 (641)
T ss_pred EEEeccCCC--chhhhhhchHHHh----CCeEEEehHHHHHHHHHHHHHHhcC-CchhHhcchhhHHHHHHHHHHHHhc
Confidence 455555443 2234443433322 3578999988887777778888775 8999999999999999999998774
No 279
>PRK02362 ski2-like helicase; Provisional
Probab=43.20 E-value=57 Score=32.20 Aligned_cols=63 Identities=10% Similarity=0.081 Sum_probs=43.1
Q ss_pred EEEEEecCcchHHHHH-HHHHHHhhcCCCCCCcEEEEeCchHHHHHHHHHHhcc---CCceEEEecCCCCHH
Q 028124 24 HFYVAVDRLQFKMETL-VELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNL---ADISFSSLHSDLAET 91 (213)
Q Consensus 24 ~~~~~~~~~~~K~~~L-~~ll~~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~---~~~~~~~lhg~~~~~ 91 (213)
..++..+...=|.-.. ..+++.+ .++.++|+.+++++-|.+.++.++.. | +++..++|+.+..
T Consensus 41 nvlv~APTGSGKTlia~lail~~l----~~~~kal~i~P~raLa~q~~~~~~~~~~~g-~~v~~~tGd~~~~ 107 (737)
T PRK02362 41 NLLAAIPTASGKTLIAELAMLKAI----ARGGKALYIVPLRALASEKFEEFERFEELG-VRVGISTGDYDSR 107 (737)
T ss_pred cEEEECCCcchHHHHHHHHHHHHH----hcCCcEEEEeChHHHHHHHHHHHHHhhcCC-CEEEEEeCCcCcc
Confidence 4555555544354432 3344443 24679999999999999998888765 5 7889999987543
No 280
>COG0607 PspE Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=43.04 E-value=28 Score=24.60 Aligned_cols=36 Identities=19% Similarity=0.299 Sum_probs=30.2
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhccCCceEE-EecCCC
Q 028124 52 PGLPMIVCCSSRDELDAVCSAVSNLADISFS-SLHSDL 88 (213)
Q Consensus 52 ~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~-~lhg~~ 88 (213)
..++++|+|.+-......+..|+..| +... .+.|++
T Consensus 60 ~~~~ivv~C~~G~rS~~aa~~L~~~G-~~~~~~l~gG~ 96 (110)
T COG0607 60 DDDPIVVYCASGVRSAAAAAALKLAG-FTNVYNLDGGI 96 (110)
T ss_pred CCCeEEEEeCCCCChHHHHHHHHHcC-CccccccCCcH
Confidence 46899999999999999999999988 5665 677775
No 281
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=42.86 E-value=2.7e+02 Score=25.63 Aligned_cols=61 Identities=13% Similarity=0.105 Sum_probs=45.6
Q ss_pred ecCcchHHHHHHHHHHHhhcCCCCCCcEEEEeCchHHHHHHHHHHhcc-CCceEEEecCCCCHHHH
Q 028124 29 VDRLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNL-ADISFSSLHSDLAETER 93 (213)
Q Consensus 29 ~~~~~~K~~~L~~ll~~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~-~~~~~~~lhg~~~~~~R 93 (213)
|-..- |.+.+.+-++... ..+.++-|-.+..+.|-+|+..|+.. .+..+..+||+-++.-|
T Consensus 124 V~GaG-KTEMif~~i~~al---~~G~~vciASPRvDVclEl~~Rlk~aF~~~~I~~Lyg~S~~~fr 185 (441)
T COG4098 124 VTGAG-KTEMIFQGIEQAL---NQGGRVCIASPRVDVCLELYPRLKQAFSNCDIDLLYGDSDSYFR 185 (441)
T ss_pred ecCCC-chhhhHHHHHHHH---hcCCeEEEecCcccchHHHHHHHHHhhccCCeeeEecCCchhcc
Confidence 33344 7777777776533 36889999999999999999999754 34678999998765543
No 282
>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional
Probab=42.76 E-value=47 Score=28.54 Aligned_cols=51 Identities=14% Similarity=0.055 Sum_probs=34.6
Q ss_pred HHHHHHHHHhhcCCCCCCcEEEEeCchH-HHHHHHHHHhccCCceEEEecCCCC
Q 028124 37 ETLVELLHLVVAGRRPGLPMIVCCSSRD-ELDAVCSAVSNLADISFSSLHSDLA 89 (213)
Q Consensus 37 ~~L~~ll~~~~~~~~~~~~~IIF~~~~~-~~~~l~~~L~~~~~~~~~~lhg~~~ 89 (213)
+.+.++++.+ + ..+..++||||.+-. .+..++..|...|+-.+..+.|+++
T Consensus 73 ~~~~~~~~~~-G-i~~d~~VVvyc~~~~~~a~~~~~~l~~~G~~~v~~l~GG~~ 124 (281)
T PRK11493 73 ETFAVAMREL-G-VNQDKHLVVYDEGNLFSAPRAWWMLRTFGVEKVSILAGGLA 124 (281)
T ss_pred HHHHHHHHHc-C-CCCCCEEEEECCCCCchHHHHHHHHHHhcCCcEEEcCCCHH
Confidence 4555566552 1 246789999998744 3556777788878545788888864
No 283
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=41.49 E-value=65 Score=29.07 Aligned_cols=38 Identities=11% Similarity=0.231 Sum_probs=30.6
Q ss_pred CCCCcEEEEeCchHHHHHHHHHHhccCCceEEEecCCC
Q 028124 51 RPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDL 88 (213)
Q Consensus 51 ~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~lhg~~ 88 (213)
.+.+++++||++-..+...+..|...|+-.+..+.|++
T Consensus 55 ~~~~~IvvyC~~G~rs~~aa~~L~~~G~~~v~~l~GG~ 92 (376)
T PRK08762 55 DRDREIVLICASGTRSAHAAATLRELGYTRVASVAGGF 92 (376)
T ss_pred CCCCeEEEEcCCCcHHHHHHHHHHHcCCCceEeecCcH
Confidence 35689999999987888888899888854677888775
No 284
>smart00493 TOPRIM topoisomerases, DnaG-type primases, OLD family nucleases and RecR proteins.
Probab=41.25 E-value=1e+02 Score=20.30 Aligned_cols=45 Identities=13% Similarity=0.075 Sum_probs=28.9
Q ss_pred EEEEeCchHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhc
Q 028124 56 MIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRH 102 (213)
Q Consensus 56 ~IIF~~~~~~~~~l~~~L~~~~~~~~~~lhg~~~~~~R~~~l~~Fr~ 102 (213)
.++.|.....+..+.+..... ..+....|.....+....++++..
T Consensus 2 ~l~ivEg~~da~~~~~~~~~~--~~~~~~~G~~~~~~~~~~l~~~~~ 46 (76)
T smart00493 2 VLIIVEGPADAIALEKAGGFG--GNVVALGGHLLKKEIIKLLKRLAK 46 (76)
T ss_pred EEEEEcCHHHHHHHHHhcCCC--EEEEEEeeeecHHHHHHHHHHHhc
Confidence 467788888888887776432 356666666555555666666544
No 285
>smart00115 CASc Caspase, interleukin-1 beta converting enzyme (ICE) homologues. Cysteine aspartases that mediate programmed cell death (apoptosis). Caspases are synthesised as zymogens and activated by proteolysis of the peptide backbone adjacent to an aspartate. The resulting two subunits associate to form an (alpha)2(beta)2-tetramer which is the active enzyme. Activation of caspases can be mediated by other caspase homologues.
Probab=41.19 E-value=2.2e+02 Score=23.96 Aligned_cols=89 Identities=16% Similarity=0.215 Sum_probs=61.0
Q ss_pred CCCCcEEEEeCch-----------HHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhcccccccccccccCCCCC
Q 028124 51 RPGLPMIVCCSSR-----------DELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDES 119 (213)
Q Consensus 51 ~~~~~~IIF~~~~-----------~~~~~l~~~L~~~~~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~~~~~~~~~~~~~~ 119 (213)
.+.+-+||+.|.. ..++.|++.|++.| +.+ .++-+++..+-.+.+++|....
T Consensus 6 ~p~g~alII~n~~f~~~~~r~g~~~D~~~l~~~f~~lg-F~V-~~~~dlt~~em~~~l~~~~~~~--------------- 68 (241)
T smart00115 6 KPRGLALIINNENFHSLPRRNGTDVDAENLTELFQSLG-YEV-HVKNNLTAEEMLEELKEFAERP--------------- 68 (241)
T ss_pred CCCcEEEEEECccCCCCcCCCCcHHHHHHHHHHHHHCC-CEE-EEecCCCHHHHHHHHHHHHhcc---------------
Confidence 4567888888863 47999999999998 565 5677899999999999997731
Q ss_pred cCCCCCCceeEEEEeCCCCCcCcCCCCCCCCCEEEEecC-CCChHHHHHhh
Q 028124 120 ETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYEL-PTKKETYIRRM 169 (213)
Q Consensus 120 ~~~~~~~~~~iLV~Td~~~~~~~rGld~~~v~~VI~yd~-P~~~~~yi~R~ 169 (213)
+ -...+.+|+. . ++.|. .++|+=-|- +-+.++.....
T Consensus 69 --~--~~~~d~~v~~-~----~sHG~----~~~l~~~D~~~v~l~~i~~~f 106 (241)
T smart00115 69 --E--HSDSDSFVCV-L----LSHGE----EGGIYGTDHSPLPLDEIFSLF 106 (241)
T ss_pred --c--cCCCCEEEEE-E----cCCCC----CCeEEEecCCEEEHHHHHHhc
Confidence 0 0024455554 5 68883 366666554 44566666655
No 286
>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase. The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.
Probab=41.10 E-value=74 Score=28.19 Aligned_cols=36 Identities=6% Similarity=0.113 Sum_probs=29.2
Q ss_pred CCcEEEEeC-chHHHHHHHHHHhccCCceEEEecCCCC
Q 028124 53 GLPMIVCCS-SRDELDAVCSAVSNLADISFSSLHSDLA 89 (213)
Q Consensus 53 ~~~~IIF~~-~~~~~~~l~~~L~~~~~~~~~~lhg~~~ 89 (213)
..+++|||. +-..+...+..|...| +.+..+.|++.
T Consensus 74 ~~~vvvyC~~gG~RS~~aa~~L~~~G-~~v~~L~GG~~ 110 (311)
T TIGR03167 74 PPQPLLYCWRGGMRSGSLAWLLAQIG-FRVPRLEGGYK 110 (311)
T ss_pred CCcEEEEECCCChHHHHHHHHHHHcC-CCEEEecChHH
Confidence 445999995 5677888899999988 58889999874
No 287
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=39.93 E-value=1.1e+02 Score=21.41 Aligned_cols=32 Identities=13% Similarity=0.265 Sum_probs=24.0
Q ss_pred CCcEEEEeC------chHHHHHHHHHHhccCCceEEEec
Q 028124 53 GLPMIVCCS------SRDELDAVCSAVSNLADISFSSLH 85 (213)
Q Consensus 53 ~~~~IIF~~------~~~~~~~l~~~L~~~~~~~~~~lh 85 (213)
..+++||.. .+--|..+.+.|...+ +....+.
T Consensus 7 ~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~-i~y~~id 44 (90)
T cd03028 7 ENPVVLFMKGTPEEPRCGFSRKVVQILNQLG-VDFGTFD 44 (90)
T ss_pred cCCEEEEEcCCCCCCCCcHHHHHHHHHHHcC-CCeEEEE
Confidence 479999975 5677888888888876 5655554
No 288
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=38.62 E-value=2.6e+02 Score=24.23 Aligned_cols=49 Identities=20% Similarity=0.375 Sum_probs=39.2
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHH
Q 028124 52 PGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEF 100 (213)
Q Consensus 52 ~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~lhg~~~~~~R~~~l~~F 100 (213)
.+..+|+...+.+..+.|++.|.....+.+..+--|+++.+...-+.+.
T Consensus 29 ~g~~liLvaR~~~kL~~la~~l~~~~~v~v~vi~~DLs~~~~~~~l~~~ 77 (265)
T COG0300 29 RGYNLILVARREDKLEALAKELEDKTGVEVEVIPADLSDPEALERLEDE 77 (265)
T ss_pred CCCEEEEEeCcHHHHHHHHHHHHHhhCceEEEEECcCCChhHHHHHHHH
Confidence 5789999999999999999999876447888999998776655544443
No 289
>PRK00254 ski2-like helicase; Provisional
Probab=38.52 E-value=1.9e+02 Score=28.49 Aligned_cols=65 Identities=11% Similarity=0.155 Sum_probs=44.4
Q ss_pred eEEEEEecCcchHHHHH-HHHHHHhhcCCCCCCcEEEEeCchHHHHHHHHHHhc---cCCceEEEecCCCCHH
Q 028124 23 RHFYVAVDRLQFKMETL-VELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSN---LADISFSSLHSDLAET 91 (213)
Q Consensus 23 ~~~~~~~~~~~~K~~~L-~~ll~~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~---~~~~~~~~lhg~~~~~ 91 (213)
+...+..+...=|.... ..+++.+. ..+.++|+.+++++-+.+.++.+.. .+ +++..++|+.+..
T Consensus 40 ~nvlv~apTGsGKT~~~~l~il~~l~---~~~~~~l~l~P~~aLa~q~~~~~~~~~~~g-~~v~~~~Gd~~~~ 108 (720)
T PRK00254 40 KNLVLAIPTASGKTLVAEIVMVNKLL---REGGKAVYLVPLKALAEEKYREFKDWEKLG-LRVAMTTGDYDST 108 (720)
T ss_pred CcEEEECCCCcHHHHHHHHHHHHHHH---hcCCeEEEEeChHHHHHHHHHHHHHHhhcC-CEEEEEeCCCCCc
Confidence 34556666655465544 33444432 2457999999999999998887764 35 7899999998654
No 290
>PF11019 DUF2608: Protein of unknown function (DUF2608); InterPro: IPR022565 This family is conserved in Bacteria. The function is not known.
Probab=38.07 E-value=2.3e+02 Score=24.13 Aligned_cols=56 Identities=21% Similarity=0.237 Sum_probs=40.1
Q ss_pred EEEecCcchHHHHHHHHHHHhhcCCCCCCcEEEEe-CchHHHHHHHHHHhccCCceEEEecCC
Q 028124 26 YVAVDRLQFKMETLVELLHLVVAGRRPGLPMIVCC-SSRDELDAVCSAVSNLADISFSSLHSD 87 (213)
Q Consensus 26 ~~~~~~~~~K~~~L~~ll~~~~~~~~~~~~~IIF~-~~~~~~~~l~~~L~~~~~~~~~~lhg~ 87 (213)
...+.. ..|-..|..+|..+ ....+.|||+ ++.+....+.+.++..+ +....+|-.
T Consensus 155 Ilft~~-~~KG~~L~~fL~~~----~~~pk~IIfIDD~~~nl~sv~~a~k~~~-I~f~G~~Yt 211 (252)
T PF11019_consen 155 ILFTGG-QDKGEVLKYFLDKI----NQSPKKIIFIDDNKENLKSVEKACKKSG-IDFIGFHYT 211 (252)
T ss_pred eEEeCC-CccHHHHHHHHHHc----CCCCCeEEEEeCCHHHHHHHHHHHhhCC-CcEEEEEEc
Confidence 344444 45999999999883 2334455555 57888999999998876 888777754
No 291
>COG1182 AcpD Acyl carrier protein phosphodiesterase [Lipid metabolism]
Probab=38.05 E-value=37 Score=28.34 Aligned_cols=27 Identities=15% Similarity=0.552 Sum_probs=21.8
Q ss_pred eeEEEEeCCCCCcCcCCCCCCCCCEEEEecCCCChHHHHHhhcc
Q 028124 128 SHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTT 171 (213)
Q Consensus 128 ~~iLV~Td~~~~~~~rGld~~~v~~VI~yd~P~~~~~yi~R~GR 171 (213)
-.++++++. .||.+|.....|+-++-|
T Consensus 89 D~vVi~~PM-----------------~Nf~iPa~LK~yiD~i~~ 115 (202)
T COG1182 89 DKVVIAAPM-----------------YNFNIPAQLKAYIDHIAV 115 (202)
T ss_pred CeEEEEecc-----------------cccCCCHHHHHHHHHHhc
Confidence 568899998 799999988888766644
No 292
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=37.48 E-value=1.4e+02 Score=30.88 Aligned_cols=42 Identities=17% Similarity=0.159 Sum_probs=33.7
Q ss_pred CcEEEEeCchHHHHHHHHHHhcc----CCceEEEecCCCCHHHHHHH
Q 028124 54 LPMIVCCSSRDELDAVCSAVSNL----ADISFSSLHSDLAETERTLI 96 (213)
Q Consensus 54 ~~~IIF~~~~~~~~~l~~~L~~~----~~~~~~~lhg~~~~~~R~~~ 96 (213)
.+++|.++|+.-|...++++... | +++..+.|+++..++...
T Consensus 136 ~~v~IVTpTrELA~Qdae~m~~L~k~lG-LsV~~i~GG~~~~eq~~~ 181 (970)
T PRK12899 136 KPVHLVTVNDYLAQRDCEWVGSVLRWLG-LTTGVLVSGSPLEKRKEI 181 (970)
T ss_pred CCeEEEeCCHHHHHHHHHHHHHHHhhcC-CeEEEEeCCCCHHHHHHH
Confidence 45888899999999888888653 5 789999999998887543
No 293
>PF13245 AAA_19: Part of AAA domain
Probab=36.91 E-value=97 Score=21.23 Aligned_cols=46 Identities=20% Similarity=0.189 Sum_probs=34.0
Q ss_pred EecCcchHHHHHHHHHHHhhcC-CCCCCcEEEEeCchHHHHHHHHHH
Q 028124 28 AVDRLQFKMETLVELLHLVVAG-RRPGLPMIVCCSSRDELDAVCSAV 73 (213)
Q Consensus 28 ~~~~~~~K~~~L~~ll~~~~~~-~~~~~~~IIF~~~~~~~~~l~~~L 73 (213)
.-+...=|-..+..++..+... ..+++++++.+.++..++.+.+.|
T Consensus 16 ~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 16 QGPPGTGKTTTLAARIAELLAARADPGKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred ECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECCCHHHHHHHHHHH
Confidence 4343444888888888776521 123789999999999999999999
No 294
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=36.13 E-value=55 Score=29.40 Aligned_cols=38 Identities=16% Similarity=0.267 Sum_probs=31.4
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhccCCceEEEecCCCC
Q 028124 52 PGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLA 89 (213)
Q Consensus 52 ~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~lhg~~~ 89 (213)
+.+++++||++-..+...+..|+..|.-.+..+.|++.
T Consensus 313 ~~~~IvvyC~~G~rS~~Aa~~L~~~G~~nV~~L~GGi~ 350 (355)
T PRK05597 313 AGDEVVVYCAAGVRSAQAVAILERAGYTGMSSLDGGIE 350 (355)
T ss_pred CCCeEEEEcCCCHHHHHHHHHHHHcCCCCEEEecCcHH
Confidence 45789999999889999999999888434778899873
No 295
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=35.87 E-value=71 Score=30.22 Aligned_cols=36 Identities=6% Similarity=0.130 Sum_probs=28.6
Q ss_pred CCcEEEEeCchHHHHHHHHHHhcc---CCceEEEecCCC
Q 028124 53 GLPMIVCCSSRDELDAVCSAVSNL---ADISFSSLHSDL 88 (213)
Q Consensus 53 ~~~~IIF~~~~~~~~~l~~~L~~~---~~~~~~~lhg~~ 88 (213)
..+++|..+|+.-++.++..-++. ..+++...+|+.
T Consensus 152 ~P~~lIlapTReL~~Qi~nea~k~~~~s~~~~~~~ygg~ 190 (482)
T KOG0335|consen 152 YPRALILAPTRELVDQIYNEARKFSYLSGMKSVVVYGGT 190 (482)
T ss_pred CCceEEEeCcHHHhhHHHHHHHhhcccccceeeeeeCCc
Confidence 378999999999999998877664 226778888883
No 296
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=35.76 E-value=1.8e+02 Score=29.35 Aligned_cols=43 Identities=12% Similarity=0.122 Sum_probs=34.7
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhc----cCCceEEEecCCCC-HHHHHH
Q 028124 52 PGLPMIVCCSSRDELDAVCSAVSN----LADISFSSLHSDLA-ETERTL 95 (213)
Q Consensus 52 ~~~~~IIF~~~~~~~~~l~~~L~~----~~~~~~~~lhg~~~-~~~R~~ 95 (213)
.+.++.|.++|..-|...++.+.. .| +++..+.|+++ .++|..
T Consensus 118 ~G~~v~VvTpt~~LA~qd~e~~~~l~~~lG-l~v~~i~g~~~~~~~r~~ 165 (790)
T PRK09200 118 EGKGVHLITVNDYLAKRDAEEMGQVYEFLG-LTVGLNFSDIDDASEKKA 165 (790)
T ss_pred cCCCeEEEeCCHHHHHHHHHHHHHHHhhcC-CeEEEEeCCCCcHHHHHH
Confidence 568999999999888877776644 36 89999999999 777764
No 297
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=35.31 E-value=62 Score=31.51 Aligned_cols=39 Identities=13% Similarity=0.184 Sum_probs=31.1
Q ss_pred CCCCcEEEEeCchHHHHHHHHHHhccC---CceEEEecCCCC
Q 028124 51 RPGLPMIVCCSSRDELDAVCSAVSNLA---DISFSSLHSDLA 89 (213)
Q Consensus 51 ~~~~~~IIF~~~~~~~~~l~~~L~~~~---~~~~~~lhg~~~ 89 (213)
..+--+||..+|+.-|..+++.|.+-| .+++..+-|+..
T Consensus 139 ~DGlGalIISPTRELA~QtFevL~kvgk~h~fSaGLiiGG~~ 180 (758)
T KOG0343|consen 139 TDGLGALIISPTRELALQTFEVLNKVGKHHDFSAGLIIGGKD 180 (758)
T ss_pred CCCceeEEecchHHHHHHHHHHHHHHhhccccccceeecCch
Confidence 456789999999999999999998753 256777777754
No 298
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=34.75 E-value=1.3e+02 Score=26.07 Aligned_cols=50 Identities=10% Similarity=0.256 Sum_probs=36.9
Q ss_pred CceEEEEEecCcchHHHHHHHHHHHhhcCCCCCCcEEEEeCchHHHHHHHHHHhccC
Q 028124 21 QPRHFYVAVDRLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLA 77 (213)
Q Consensus 21 ~i~~~~~~~~~~~~K~~~L~~ll~~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~ 77 (213)
.+...++-.++ -++.|..+.+.+ .++..+++|+++..+++++.+.|+..|
T Consensus 163 ~vDav~LDmp~---PW~~le~~~~~L----kpgg~~~~y~P~veQv~kt~~~l~~~g 212 (256)
T COG2519 163 DVDAVFLDLPD---PWNVLEHVSDAL----KPGGVVVVYSPTVEQVEKTVEALRERG 212 (256)
T ss_pred ccCEEEEcCCC---hHHHHHHHHHHh----CCCcEEEEEcCCHHHHHHHHHHHHhcC
Confidence 45555555544 456666655552 467999999999999999999999876
No 299
>cd01446 DSP_MapKP N-terminal regulatory rhodanese domain of dual specificity phosphatases (DSP), such as Mapk Phosphatase. This domain is believed to determine substrate specificity by binding the substrate, such as ERK2, and activating the C-terminal catalytic domain by inducing a conformational change. This domain has homology to the Rhodanese Homology Domain.
Probab=34.64 E-value=64 Score=24.07 Aligned_cols=37 Identities=16% Similarity=0.194 Sum_probs=28.7
Q ss_pred CCCcEEEEeCchHH---------HHHHHHHHhc--cCCceEEEecCCC
Q 028124 52 PGLPMIVCCSSRDE---------LDAVCSAVSN--LADISFSSLHSDL 88 (213)
Q Consensus 52 ~~~~~IIF~~~~~~---------~~~l~~~L~~--~~~~~~~~lhg~~ 88 (213)
...++||||.+-.. +..+++.|.. .+...+..|.||+
T Consensus 74 ~~~~VVvYd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~L~GG~ 121 (132)
T cd01446 74 ESLAVVVYDESSSDRERLREDSTAESVLGKLLRKLQEGCSVYLLKGGF 121 (132)
T ss_pred CCCeEEEEeCCCcchhhccccchHHHHHHHHHHhcCCCceEEEEcchH
Confidence 56799999987665 7788888877 2336899999996
No 300
>COG2927 HolC DNA polymerase III, chi subunit [DNA replication, recombination, and repair]
Probab=34.34 E-value=1.8e+02 Score=23.02 Aligned_cols=46 Identities=13% Similarity=0.206 Sum_probs=34.8
Q ss_pred HHHHHHHHHhhcCCCCCCcEEEEeCchHHHHHHHHHHhccCCceEEEecC
Q 028124 37 ETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHS 86 (213)
Q Consensus 37 ~~L~~ll~~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~lhg 86 (213)
+.++.|+++-. ..+.|++|-|.+...+++|-+.|=... -....=|+
T Consensus 16 ~~~c~L~~k~~---~~G~rvlI~~~d~~q~e~LD~~LWt~~-~~sFiPH~ 61 (144)
T COG2927 16 AAACRLAEKAW---RSGWRVLIQCEDEAQAEALDEHLWTFS-AESFIPHN 61 (144)
T ss_pred HHHHHHHHHHH---HcCCeEEEEeCCHHHHHHHHHhhhccc-hhcccCCc
Confidence 38888887643 468999999999999999999996553 24445554
No 301
>COG1054 Predicted sulfurtransferase [General function prediction only]
Probab=32.90 E-value=1.2e+02 Score=27.00 Aligned_cols=39 Identities=5% Similarity=0.054 Sum_probs=34.5
Q ss_pred CCCCcEEEEeCchHHHHHHHHHHhccCCceEEEecCCCC
Q 028124 51 RPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLA 89 (213)
Q Consensus 51 ~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~lhg~~~ 89 (213)
..+++++.||----+|+....+|...|+-.+.-|+|++-
T Consensus 170 ~~~KkVvmyCTGGIRCEKas~~m~~~GF~eVyhL~GGIl 208 (308)
T COG1054 170 LKDKKVVMYCTGGIRCEKASAWMKENGFKEVYHLEGGIL 208 (308)
T ss_pred ccCCcEEEEcCCceeehhhHHHHHHhcchhhhcccchHH
Confidence 456799999999999999999999999777888999973
No 302
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=32.78 E-value=2.3e+02 Score=28.78 Aligned_cols=45 Identities=16% Similarity=0.101 Sum_probs=35.1
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhc----cCCceEEEecCCCCHHHHHHHH
Q 028124 52 PGLPMIVCCSSRDELDAVCSAVSN----LADISFSSLHSDLAETERTLIL 97 (213)
Q Consensus 52 ~~~~~IIF~~~~~~~~~l~~~L~~----~~~~~~~~lhg~~~~~~R~~~l 97 (213)
.+.++-|.++|..-|..-++.+.. .| +++..+.|+++..+|...+
T Consensus 121 ~G~~V~IvTpn~yLA~rd~e~~~~l~~~LG-lsv~~i~~~~~~~er~~~y 169 (830)
T PRK12904 121 TGKGVHVVTVNDYLAKRDAEWMGPLYEFLG-LSVGVILSGMSPEERREAY 169 (830)
T ss_pred cCCCEEEEecCHHHHHHHHHHHHHHHhhcC-CeEEEEcCCCCHHHHHHhc
Confidence 346788889988777766666643 46 8999999999999988774
No 303
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=32.69 E-value=81 Score=32.01 Aligned_cols=42 Identities=17% Similarity=0.309 Sum_probs=27.8
Q ss_pred CCCcEEEEe-CchHHHHHHHHHHhccC--------------------------CceEEEecCCCCHHHH
Q 028124 52 PGLPMIVCC-SSRDELDAVCSAVSNLA--------------------------DISFSSLHSDLAETER 93 (213)
Q Consensus 52 ~~~~~IIF~-~~~~~~~~l~~~L~~~~--------------------------~~~~~~lhg~~~~~~R 93 (213)
...+.+||| +++.-+..+++.+.+.+ .+++..++|+.+....
T Consensus 60 ~~~~rLv~~vPtReLa~Qi~~~~~~~~k~l~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q 128 (844)
T TIGR02621 60 KVPRRLVYVVNRRTVVDQVTEEAEKIGERLPDVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDE 128 (844)
T ss_pred cccceEEEeCchHHHHHHHHHHHHHHHHHhcccchhhhhhhhhhccccccccCCeEEEEEECCCChHHH
Confidence 345677766 88888777766654332 2677888898775543
No 304
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=32.47 E-value=81 Score=28.99 Aligned_cols=79 Identities=9% Similarity=0.065 Sum_probs=56.8
Q ss_pred ceeEEEEeCCCCCcCcCCCCCCCCCEEEEecCCCChHHHHHhhccc-cCCCCeEEEEEeCchhHHHHHHHHHhccccccc
Q 028124 127 KSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTC-LAADGSVINIVVGGEVVTLRSMEESLGLIVAEV 205 (213)
Q Consensus 127 ~~~iLV~Td~~~~~~~rGld~~~v~~VI~yd~P~~~~~yi~R~GR~-~~~~g~~i~~~~~~e~~~~~~le~~l~~~~~~~ 205 (213)
..++..|+.. ..++.|...+.-+.++-...++-.+.+++.|. ....|.-+.+..+.+......+...+...++.+
T Consensus 122 ~~~v~~~igg----~~~~~~~~~i~~~~~hivvGTpgrV~dml~~~~l~~~~iKmfvlDEaDEmLs~gfkdqI~~if~~l 197 (397)
T KOG0327|consen 122 DVSVHACIGG----TNVRREDQALLKDKPHIVVGTPGRVFDMLNRGSLSTDGIKMFVLDEADEMLSRGFKDQIYDIFQEL 197 (397)
T ss_pred ceeeeeecCc----ccchhhhhhhhccCceeecCCchhHHHhhccccccccceeEEeecchHhhhccchHHHHHHHHHHc
Confidence 3778888887 88888888888888888888999999988764 566777777777766655555555555445555
Q ss_pred Cccc
Q 028124 206 PINI 209 (213)
Q Consensus 206 ~~~~ 209 (213)
|.+.
T Consensus 198 p~~v 201 (397)
T KOG0327|consen 198 PSDV 201 (397)
T ss_pred Ccch
Confidence 5443
No 305
>cd01443 Cdc25_Acr2p Cdc25 enzymes are members of the Rhodanese Homology Domain (RHOD) superfamily. Also included in this CD are eukaryotic arsenate resistance proteins such as Saccharomyces cerevisiae Acr2p and similar proteins. Cdc25 phosphatases activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. The Cdc25 and Acr2p RHOD domains have the signature motif (H/YCxxxxxR).
Probab=32.14 E-value=1.8e+02 Score=20.94 Aligned_cols=37 Identities=11% Similarity=0.011 Sum_probs=24.2
Q ss_pred CCcEEEEeCch-----HHHHHHHHHHhccC--CceEEEecCCCC
Q 028124 53 GLPMIVCCSSR-----DELDAVCSAVSNLA--DISFSSLHSDLA 89 (213)
Q Consensus 53 ~~~~IIF~~~~-----~~~~~l~~~L~~~~--~~~~~~lhg~~~ 89 (213)
..++|++|.+. ..+.++...|++.| +..+..+.|++.
T Consensus 66 ~~~iv~~C~~~g~rs~~a~~~l~~~l~~~G~~~~~v~~l~GG~~ 109 (113)
T cd01443 66 VKLAIFYCGSSQGRGPRAARWFADYLRKVGESLPKSYILTGGIK 109 (113)
T ss_pred CCEEEEECCCCCcccHHHHHHHHHHHhccCCCCCeEEEECChhh
Confidence 46789999752 33556666676665 236777888863
No 306
>cd01531 Acr2p Eukaryotic arsenate resistance proteins are members of the Rhodanese Homology Domain superfamily. Included in this CD is the Saccharomyces cerevisiae arsenate reductase protein, Acr2p, and other yeast and plant homologs.
Probab=31.48 E-value=79 Score=22.83 Aligned_cols=38 Identities=11% Similarity=0.178 Sum_probs=23.1
Q ss_pred CCCcEEEEeC-chHH----HHHHHHHHhc----cCCceEEEecCCCC
Q 028124 52 PGLPMIVCCS-SRDE----LDAVCSAVSN----LADISFSSLHSDLA 89 (213)
Q Consensus 52 ~~~~~IIF~~-~~~~----~~~l~~~L~~----~~~~~~~~lhg~~~ 89 (213)
+..++++||+ +... +..+.+.|.. .|+.++..+.|++.
T Consensus 61 ~~~~iv~yC~~~~~r~~~aa~~l~~~~~~~~~~~G~~~v~~l~gG~~ 107 (113)
T cd01531 61 KKDTVVFHCALSQVRGPSAARKFLRYLDEEDLETSKFEVYVLHGGFN 107 (113)
T ss_pred CCCeEEEEeecCCcchHHHHHHHHHHHHHhccccCCCeEEEEcChHH
Confidence 3568999997 3222 3334333322 26567899999874
No 307
>PRK09629 bifunctional thiosulfate sulfurtransferase/phosphatidylserine decarboxylase; Provisional
Probab=31.48 E-value=91 Score=30.34 Aligned_cols=51 Identities=10% Similarity=0.102 Sum_probs=36.6
Q ss_pred HHHHHHHHHhhcCCCCCCcEEEEeCch-HHHHHHHHHHhccCCceEEEecCCCC
Q 028124 37 ETLVELLHLVVAGRRPGLPMIVCCSSR-DELDAVCSAVSNLADISFSSLHSDLA 89 (213)
Q Consensus 37 ~~L~~ll~~~~~~~~~~~~~IIF~~~~-~~~~~l~~~L~~~~~~~~~~lhg~~~ 89 (213)
+.|.+++..+ + -.+..++||||++- ..+.+++..|+..|+-++..|.|+++
T Consensus 67 ~~l~~~l~~l-G-I~~d~~VVvYd~~g~~~A~R~~w~L~~~G~~~V~iLdGG~~ 118 (610)
T PRK09629 67 ADLEQLFGEL-G-HNPDAVYVVYDDEGGGWAGRFIWLLDVIGHSGYHYLDGGVL 118 (610)
T ss_pred HHHHHHHHHc-C-CCCCCEEEEECCCCCchHHHHHHHHHHcCCCCEEEcCCCHH
Confidence 3455556552 2 24678999999865 46778888898888657889999863
No 308
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=30.99 E-value=84 Score=30.48 Aligned_cols=79 Identities=16% Similarity=0.124 Sum_probs=50.8
Q ss_pred CCCCCcEEEEeCchHHHHHHHHHHhccCC----ceEEEecCCCCHHHHHHHHHHHhcccccccccccccCCCCCcCCCCC
Q 028124 50 RRPGLPMIVCCSSRDELDAVCSAVSNLAD----ISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDE 125 (213)
Q Consensus 50 ~~~~~~~IIF~~~~~~~~~l~~~L~~~~~----~~~~~lhg~~~~~~R~~~l~~Fr~g~~~~~~~~~~~~~~~~~~~~~~ 125 (213)
+..+.=.+|.++|++-|-.+++.+.+.-+ |....+-|+ +.|..--.+.|.|
T Consensus 208 Rs~G~~ALVivPTREL~~Q~y~~~qKLl~~~hWIVPg~lmGG---EkkKSEKARLRKG---------------------- 262 (708)
T KOG0348|consen 208 RSDGPYALVIVPTRELALQIYETVQKLLKPFHWIVPGVLMGG---EKKKSEKARLRKG---------------------- 262 (708)
T ss_pred ccCCceEEEEechHHHHHHHHHHHHHHhcCceEEeeceeecc---cccccHHHHHhcC----------------------
Confidence 34456789999999999998888876511 111222333 3333444678898
Q ss_pred CceeEEEEeCCCCC---cCcCCCCCCCCCEEEE
Q 028124 126 HKSHMIVVTDACLP---LLSSGESAISARVLIN 155 (213)
Q Consensus 126 ~~~~iLV~Td~~~~---~~~rGld~~~v~~VI~ 155 (213)
++|||.|+-.|- .-...+++..++|||.
T Consensus 263 --iNILIgTPGRLvDHLknT~~i~~s~LRwlVl 293 (708)
T KOG0348|consen 263 --INILIGTPGRLVDHLKNTKSIKFSRLRWLVL 293 (708)
T ss_pred --ceEEEcCchHHHHHHhccchheeeeeeEEEe
Confidence 999999985210 0145567777888875
No 309
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=30.64 E-value=69 Score=29.18 Aligned_cols=39 Identities=8% Similarity=0.117 Sum_probs=32.1
Q ss_pred CCCCcEEEEeCchHHHHHHHHHHhccCCceEEEecCCCC
Q 028124 51 RPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLA 89 (213)
Q Consensus 51 ~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~lhg~~~ 89 (213)
.+.++++++|.+-..+...+..|...|.-.+..+.|++.
T Consensus 341 ~~d~~iVvyC~~G~rS~~aa~~L~~~G~~~V~~L~GG~~ 379 (392)
T PRK07878 341 PQDRTIVLYCKTGVRSAEALAALKKAGFSDAVHLQGGVV 379 (392)
T ss_pred CCCCcEEEEcCCChHHHHHHHHHHHcCCCcEEEecCcHH
Confidence 356799999999888999999999988435778899863
No 310
>COG1204 Superfamily II helicase [General function prediction only]
Probab=30.11 E-value=1.6e+02 Score=29.61 Aligned_cols=102 Identities=15% Similarity=0.128 Sum_probs=63.0
Q ss_pred EEEEEecCcchHH-HHHHHHHHHhhcCCCCCCcEEEEeCchHHHHHHHHHHh---ccCCceEEEecCCCCHHHHHHHHHH
Q 028124 24 HFYVAVDRLQFKM-ETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVS---NLADISFSSLHSDLAETERTLILEE 99 (213)
Q Consensus 24 ~~~~~~~~~~~K~-~~L~~ll~~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~---~~~~~~~~~lhg~~~~~~R~~~l~~ 99 (213)
...+.++...=|- =.+..+++.+.. .+.|+|--|+.++-|++.++.++ ..| +++..++|+++... +
T Consensus 49 N~li~aPTgsGKTlIA~lai~~~l~~---~~~k~vYivPlkALa~Ek~~~~~~~~~~G-irV~~~TgD~~~~~------~ 118 (766)
T COG1204 49 NVLISAPTGSGKTLIALLAILSTLLE---GGGKVVYIVPLKALAEEKYEEFSRLEELG-IRVGISTGDYDLDD------E 118 (766)
T ss_pred cEEEEcCCCCchHHHHHHHHHHHHHh---cCCcEEEEeChHHHHHHHHHHhhhHHhcC-CEEEEecCCcccch------h
Confidence 3455555443232 233334444322 25799999999999999999998 557 89999999986433 1
Q ss_pred HhcccccccccccccCCCCCcCCCCCCceeEEEEeCCCCCcCcCCCC--CCCCCEEEEecCC
Q 028124 100 FRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGES--AISARVLINYELP 159 (213)
Q Consensus 100 Fr~g~~~~~~~~~~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~rGld--~~~v~~VI~yd~P 159 (213)
+-. +.+|+|+|.--+-++.|--+ +.+|++||.-++.
T Consensus 119 ~l~------------------------~~~ViVtT~EK~Dsl~R~~~~~~~~V~lvViDEiH 156 (766)
T COG1204 119 RLA------------------------RYDVIVTTPEKLDSLTRKRPSWIEEVDLVVIDEIH 156 (766)
T ss_pred hhc------------------------cCCEEEEchHHhhHhhhcCcchhhcccEEEEeeee
Confidence 222 37788888742222333222 2477877765543
No 311
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=29.66 E-value=1e+02 Score=32.72 Aligned_cols=105 Identities=12% Similarity=0.009 Sum_probs=73.0
Q ss_pred HHHHHHHHHHHhhcCCCCCCcEEEEeCchHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhccccccccccccc
Q 028124 35 KMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQ 114 (213)
Q Consensus 35 K~~~L~~ll~~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~~~~~~~~~ 114 (213)
|+.....++..+-. +....++|+|+.-....+-+...+.-.+ ++...--++ ++-...+..|++=
T Consensus 1204 kI~~v~~~il~iK~-k~~qekvIvfsqws~~ldV~e~~~~~N~-I~~~~~~~t---~d~~dc~~~fk~I----------- 1267 (1394)
T KOG0298|consen 1204 KIDSVVIAILYIKF-KNEQEKVIVFSQWSVVLDVKELRYLMNL-IKKQLDGET---EDFDDCIICFKSI----------- 1267 (1394)
T ss_pred CchhHHHHHHHHhc-cCcCceEEEEEehHHHHHHHHHHHHhhh-hHhhhccCC---cchhhhhhhcccc-----------
Confidence 66666555544333 4556899999988877777777776654 443322222 3345567777772
Q ss_pred CCCCCcCCCCCCceeEEEEeCCCCCcCcCCCCCCCCCEEEEecCCCChHHHHHhhccc
Q 028124 115 SGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTC 172 (213)
Q Consensus 115 ~~~~~~~~~~~~~~~iLV~Td~~~~~~~rGld~~~v~~VI~yd~P~~~~~yi~R~GR~ 172 (213)
--+|+-+.. .+-|+++-++.+|+..++=-++..=.|-+||.
T Consensus 1268 -------------~clll~~~~----~~~GLNL~eA~Hvfl~ePiLN~~~E~QAigRv 1308 (1394)
T KOG0298|consen 1268 -------------DCLLLFVSK----GSKGLNLIEATHVFLVEPILNPGDEAQAIGRV 1308 (1394)
T ss_pred -------------eEEEEEecc----CcccccHHhhhhhheeccccCchHHHhhhhhh
Confidence 234555666 89999999999999999888888888888884
No 312
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=29.53 E-value=2.1e+02 Score=27.31 Aligned_cols=84 Identities=17% Similarity=0.273 Sum_probs=55.0
Q ss_pred EeCchHHHHHHHHHHhccC------CceEEEecCCCCHHHHHHHHHHHhcccccccccccccCCCCCcCCCCCCceeEEE
Q 028124 59 CCSSRDELDAVCSAVSNLA------DISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIV 132 (213)
Q Consensus 59 F~~~~~~~~~l~~~L~~~~------~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~~~~~~~~~~~~~~~~~~~~~~~~iLV 132 (213)
|.+.++..+...++.+... +..+..|.|+ .+++-++.+|..-. .++||
T Consensus 371 ~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v~~LSGG---NQQKVvlarwL~~~-----------------------p~vLi 424 (500)
T COG1129 371 LIDRRKERALAERYIRRLRIKTPSPEQPIGTLSGG---NQQKVVLARWLATD-----------------------PKVLI 424 (500)
T ss_pred ccChHHHHHHHHHHHHhcCcccCCccchhhcCCch---hhhhHHHHHHHhcC-----------------------CCEEE
Confidence 6666666555555554442 2345666776 56777889998864 88999
Q ss_pred EeCCCCCcCcCCCCCCCCCEEEEecCCCChHHHHHhhccccCCCCeEEEEEeCc
Q 028124 133 VTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAADGSVINIVVGG 186 (213)
Q Consensus 133 ~Td~~~~~~~rGld~~~v~~VI~yd~P~~~~~yi~R~GR~~~~~g~~i~~~~~~ 186 (213)
.-+ -.||+|+. ...-++++=|.....|.+|.+++.+
T Consensus 425 lDE-----PTRGIDVG-------------AK~eIy~li~~lA~~G~ail~iSSE 460 (500)
T COG1129 425 LDE-----PTRGIDVG-------------AKAEIYRLIRELAAEGKAILMISSE 460 (500)
T ss_pred ECC-----CCcCcccc-------------hHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 888 59999975 2333445545445567778777764
No 313
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=29.48 E-value=1.5e+02 Score=30.46 Aligned_cols=49 Identities=18% Similarity=0.149 Sum_probs=38.2
Q ss_pred cEEEEeCchHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhccc
Q 028124 55 PMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTA 104 (213)
Q Consensus 55 ~~IIF~~~~~~~~~l~~~L~~~~~~~~~~lhg~~~~~~R~~~l~~Fr~g~ 104 (213)
=+||..+=.+-++.....|...+ |.+..|++++...+|..+++++++|.
T Consensus 306 itvVISPL~SLm~DQv~~L~~~~-I~a~~L~s~q~~~~~~~i~q~l~~~~ 354 (941)
T KOG0351|consen 306 VTVVISPLISLMQDQVTHLSKKG-IPACFLSSIQTAAERLAILQKLANGN 354 (941)
T ss_pred ceEEeccHHHHHHHHHHhhhhcC-cceeeccccccHHHHHHHHHHHhCCC
Confidence 34455555556666666675555 99999999999999999999999984
No 314
>TIGR01041 ATP_syn_B_arch ATP synthase archaeal, B subunit. Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.
Probab=28.83 E-value=5e+02 Score=24.43 Aligned_cols=19 Identities=21% Similarity=0.230 Sum_probs=11.1
Q ss_pred ChHHHHHhhccccCCCCeE
Q 028124 161 KKETYIRRMTTCLAADGSV 179 (213)
Q Consensus 161 ~~~~yi~R~GR~~~~~g~~ 179 (213)
....++-|+|+..++.|.+
T Consensus 277 ~l~~LlERaG~~~~~~GSI 295 (458)
T TIGR01041 277 DLATIYERAGRVKGKKGSI 295 (458)
T ss_pred HhHHHHHhcccCCCCCcce
Confidence 3456677888764334433
No 315
>TIGR00096 probable S-adenosylmethionine-dependent methyltransferase, YraL family. No member of this family is characterized, but Pfam model pfam00590 (tetrapyrrole methylase) demonstrates homology between this family and its other members, which include several methylases for the tetrapyrrole class of compound, as well as the enzyme diphthine synthase.
Probab=27.70 E-value=1.4e+02 Score=26.10 Aligned_cols=47 Identities=2% Similarity=-0.118 Sum_probs=30.7
Q ss_pred cEEEEeCchHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhcc
Q 028124 55 PMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHT 103 (213)
Q Consensus 55 ~~IIF~~~~~~~~~l~~~L~~~~~~~~~~lhg~~~~~~R~~~l~~Fr~g 103 (213)
--+|+|....+...|-..+.-.. ....+|-.-..+....+++....|
T Consensus 26 ~d~i~~EDTR~t~kLL~~~~I~~--~~~~~~~hn~~~~~~~l~~~l~~g 72 (276)
T TIGR00096 26 VDLFAEEDTRTSKLLLHLGIIAT--PKAFHIDNEFQEKQNLLAAKLEIG 72 (276)
T ss_pred CCEEEecCchhHHHHHHhcCCCC--ceEEEecccHhHHHHHHHHHHHcC
Confidence 45899998888888877774332 455566543445556666777776
No 316
>COG1099 Predicted metal-dependent hydrolases with the TIM-barrel fold [General function prediction only]
Probab=27.09 E-value=4.1e+02 Score=22.89 Aligned_cols=87 Identities=16% Similarity=0.230 Sum_probs=49.7
Q ss_pred EecCcchHHHHHHHHHHHhhcCCCCCCcEEEEeCchHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhcccccc
Q 028124 28 AVDRLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKW 107 (213)
Q Consensus 28 ~~~~~~~K~~~L~~ll~~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~~ 107 (213)
..+..+ |.+....+|+-+.....+...++|=-.+..+++++ |.....+-....-|.|+..+-.++++++..
T Consensus 133 HTPr~n-K~e~t~~ildi~~~~~l~~~lvvIDH~N~etv~~v---ld~e~~vGlTvqPgKlt~~eAveIV~ey~~----- 203 (254)
T COG1099 133 HTPRRN-KKEATSKILDILIESGLKPSLVVIDHVNEETVDEV---LDEEFYVGLTVQPGKLTVEEAVEIVREYGA----- 203 (254)
T ss_pred eCCCCc-chhHHHHHHHHHHHcCCChhheehhcccHHHHHHH---HhccceEEEEecCCcCCHHHHHHHHHHhCc-----
Confidence 344444 66666666654432233444555544444444432 322211223334488999999999999974
Q ss_pred cccccccCCCCCcCCCCCCceeEEEEeCCCCCcCcCCCCC
Q 028124 108 NQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESA 147 (213)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~rGld~ 147 (213)
-++++.+|+ .+.--|+
T Consensus 204 --------------------~r~ilnSD~----~s~~sd~ 219 (254)
T COG1099 204 --------------------ERIILNSDA----GSAASDP 219 (254)
T ss_pred --------------------ceEEEeccc----ccccccc
Confidence 679999998 5544443
No 317
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=27.09 E-value=3.7e+02 Score=27.66 Aligned_cols=57 Identities=14% Similarity=0.034 Sum_probs=39.8
Q ss_pred HHHHHHHHHHhhcCCCCCCcEEEEeCchHHHHHHH----HHHhccCCceEEEecCCCCHHHHHHHHH
Q 028124 36 METLVELLHLVVAGRRPGLPMIVCCSSRDELDAVC----SAVSNLADISFSSLHSDLAETERTLILE 98 (213)
Q Consensus 36 ~~~L~~ll~~~~~~~~~~~~~IIF~~~~~~~~~l~----~~L~~~~~~~~~~lhg~~~~~~R~~~l~ 98 (213)
...|...+.. ..+.++-|.+.+.--|..=+ ..+...| +.+.++.+++++++|..+++
T Consensus 111 vA~l~a~l~a-----l~G~~VhvvT~ndyLA~RD~e~m~~l~~~lG-l~v~~i~~~~~~~err~~Y~ 171 (913)
T PRK13103 111 VGTLAVYLNA-----LSGKGVHVVTVNDYLARRDANWMRPLYEFLG-LSVGIVTPFQPPEEKRAAYA 171 (913)
T ss_pred HHHHHHHHHH-----HcCCCEEEEeCCHHHHHHHHHHHHHHhcccC-CEEEEECCCCCHHHHHHHhc
Confidence 3444445555 35688888888766555444 4444557 89999999999999987766
No 318
>PRK11784 tRNA 2-selenouridine synthase; Provisional
Probab=26.88 E-value=92 Score=28.04 Aligned_cols=49 Identities=10% Similarity=0.174 Sum_probs=36.8
Q ss_pred CCCcEEEEeC-chHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhc
Q 028124 52 PGLPMIVCCS-SRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRH 102 (213)
Q Consensus 52 ~~~~~IIF~~-~~~~~~~l~~~L~~~~~~~~~~lhg~~~~~~R~~~l~~Fr~ 102 (213)
+..+++|||. .-..+..++..|...| +.+..+.|++.. -|...++.+..
T Consensus 87 ~~~~ivvyC~rgG~RS~~aa~~L~~~G-~~v~~L~GG~~a-wr~~~~~~~~~ 136 (345)
T PRK11784 87 ANPRGLLYCWRGGLRSGSVQQWLKEAG-IDVPRLEGGYKA-YRRFVIDTLEE 136 (345)
T ss_pred CCCeEEEEECCCChHHHHHHHHHHHcC-CCcEEEcCCHHH-HHHhhHHHHhh
Confidence 5679999995 5567888889998888 688899999854 34555555553
No 319
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=26.47 E-value=1.4e+02 Score=23.79 Aligned_cols=37 Identities=19% Similarity=0.295 Sum_probs=27.9
Q ss_pred HHHHHHHHhhcCCCCCCcEEEEeCchHHHHHHHHHHhccC
Q 028124 38 TLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLA 77 (213)
Q Consensus 38 ~L~~ll~~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~ 77 (213)
+|-+++++-.. ...++||-.+|+-.++++.++|+..+
T Consensus 21 vlp~~~~~~i~---~~~rvLvL~PTRvva~em~~aL~~~~ 57 (148)
T PF07652_consen 21 VLPEIVREAIK---RRLRVLVLAPTRVVAEEMYEALKGLP 57 (148)
T ss_dssp HHHHHHHHHHH---TT--EEEEESSHHHHHHHHHHTTTSS
T ss_pred ccHHHHHHHHH---ccCeEEEecccHHHHHHHHHHHhcCC
Confidence 56676665333 47899999999999999999998664
No 320
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=26.10 E-value=1.6e+02 Score=27.17 Aligned_cols=58 Identities=10% Similarity=0.111 Sum_probs=40.2
Q ss_pred HHHHHHHHHhhcCCCCCCcEEEEeCchHHHHHHHHHHhccC---CceEEEecCCCCHHHHHH
Q 028124 37 ETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLA---DISFSSLHSDLAETERTL 95 (213)
Q Consensus 37 ~~L~~ll~~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~---~~~~~~lhg~~~~~~R~~ 95 (213)
++-.-+|+.+.. ...+.=++||++|++-+-.+++.|...| ++++..+.|+++.-....
T Consensus 60 AFaLPil~rLse-dP~giFalvlTPTrELA~QiaEQF~alGk~l~lK~~vivGG~d~i~qa~ 120 (442)
T KOG0340|consen 60 AFALPILNRLSE-DPYGIFALVLTPTRELALQIAEQFIALGKLLNLKVSVIVGGTDMIMQAA 120 (442)
T ss_pred hhhHHHHHhhcc-CCCcceEEEecchHHHHHHHHHHHHHhcccccceEEEEEccHHHhhhhh
Confidence 333444544322 3445678999999999999999997653 378999999986544433
No 321
>PRK09629 bifunctional thiosulfate sulfurtransferase/phosphatidylserine decarboxylase; Provisional
Probab=24.75 E-value=1.5e+02 Score=28.93 Aligned_cols=49 Identities=12% Similarity=0.168 Sum_probs=35.3
Q ss_pred HHHHHHHHhhcCCCCCCcEEEEeCchHHHHHHHHHHhccCCceEEEecCCC
Q 028124 38 TLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDL 88 (213)
Q Consensus 38 ~L~~ll~~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~lhg~~ 88 (213)
.|.+++... + -.+.+++|+||++-..+...+..|+..|.-.+..+.|++
T Consensus 210 el~~~~~~~-G-i~~~~~VVvYC~sG~rAa~~~~~L~~lG~~~V~~YdGsw 258 (610)
T PRK09629 210 DMPEILRDL-G-ITPDKEVITHCQTHHRSGFTYLVAKALGYPRVKAYAGSW 258 (610)
T ss_pred HHHHHHHHc-C-CCCCCCEEEECCCChHHHHHHHHHHHcCCCCcEEeCCCH
Confidence 455555542 1 245789999999988888888888887843477888875
No 322
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=24.70 E-value=2.6e+02 Score=19.87 Aligned_cols=42 Identities=7% Similarity=0.017 Sum_probs=24.7
Q ss_pred CCcEEEEeC------chHHHHHHHHHHhccCCceEEEecCCCCHHHHHH
Q 028124 53 GLPMIVCCS------SRDELDAVCSAVSNLADISFSSLHSDLAETERTL 95 (213)
Q Consensus 53 ~~~~IIF~~------~~~~~~~l~~~L~~~~~~~~~~lhg~~~~~~R~~ 95 (213)
..+++||.. ++--|..+.+.|...+ +....+.=.-....|..
T Consensus 11 ~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~~-i~~~~~di~~~~~~~~~ 58 (97)
T TIGR00365 11 ENPVVLYMKGTPQFPQCGFSARAVQILKACG-VPFAYVNVLEDPEIRQG 58 (97)
T ss_pred cCCEEEEEccCCCCCCCchHHHHHHHHHHcC-CCEEEEECCCCHHHHHH
Confidence 479999953 4556667777777765 55544432223444443
No 323
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=24.27 E-value=1.5e+02 Score=25.48 Aligned_cols=52 Identities=10% Similarity=0.129 Sum_probs=40.0
Q ss_pred CCceEEEEEecCcchHHHHHHHHHHHhhcCCCCCCcEEEEeCchHHHHHHHHHHhccC
Q 028124 20 SQPRHFYVAVDRLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLA 77 (213)
Q Consensus 20 ~~i~~~~~~~~~~~~K~~~L~~ll~~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~ 77 (213)
..+.-.++-+++.-.-+..+.+.|+ .+++.+.+|+++...+..+.+.|++.|
T Consensus 112 ~~~DavfLDlp~Pw~~i~~~~~~L~------~~gG~i~~fsP~ieQv~~~~~~L~~~g 163 (247)
T PF08704_consen 112 SDFDAVFLDLPDPWEAIPHAKRALK------KPGGRICCFSPCIEQVQKTVEALREHG 163 (247)
T ss_dssp TSEEEEEEESSSGGGGHHHHHHHE-------EEEEEEEEEESSHHHHHHHHHHHHHTT
T ss_pred CcccEEEEeCCCHHHHHHHHHHHHh------cCCceEEEECCCHHHHHHHHHHHHHCC
Confidence 4567777777776545555555552 357899999999999999999999886
No 324
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=24.25 E-value=2.4e+02 Score=29.31 Aligned_cols=43 Identities=5% Similarity=0.041 Sum_probs=38.8
Q ss_pred CceeEEEEeCCCCCcCcCCCCCCCCCEEEEecCCCChHHHHHhhccc
Q 028124 126 HKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTC 172 (213)
Q Consensus 126 ~~~~iLV~Td~~~~~~~rGld~~~v~~VI~yd~P~~~~~yi~R~GR~ 172 (213)
.+.+.+++-.+ +.+|-|.|+|-.+.-..-..|...-.|-+||.
T Consensus 500 ~~~~fifs~~a----l~egwd~~~~~~~~~l~~~~s~~~~~q~~gr~ 542 (986)
T PRK15483 500 NTRRFLFSKWT----LREGWDNPNVFQIAKLRSSGSETSKLQEVGRG 542 (986)
T ss_pred CCeEEEEEhHH----hhhcCCCCCeEEEEEeccCCchHHHHHHhccc
Confidence 37999999999 99999999999999898888888889999994
No 325
>PRK07411 hypothetical protein; Validated
Probab=24.24 E-value=1.1e+02 Score=28.00 Aligned_cols=37 Identities=11% Similarity=0.213 Sum_probs=31.3
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhccCCceEEEecCCCC
Q 028124 52 PGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLA 89 (213)
Q Consensus 52 ~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~lhg~~~ 89 (213)
+.+++++||.+-.++...+..|+..| ++...+.|++.
T Consensus 341 ~d~~IVvyC~~G~RS~~aa~~L~~~G-~~~~~l~GG~~ 377 (390)
T PRK07411 341 NGHRLIAHCKMGGRSAKALGILKEAG-IEGTNVKGGIT 377 (390)
T ss_pred CCCeEEEECCCCHHHHHHHHHHHHcC-CCeEEecchHH
Confidence 45789999999999999999999988 56667888763
No 326
>PRK04196 V-type ATP synthase subunit B; Provisional
Probab=24.14 E-value=6e+02 Score=23.85 Aligned_cols=19 Identities=21% Similarity=0.211 Sum_probs=11.5
Q ss_pred ChHHHHHhhccccCCCCeE
Q 028124 161 KKETYIRRMTTCLAADGSV 179 (213)
Q Consensus 161 ~~~~yi~R~GR~~~~~g~~ 179 (213)
....++-|+|+..++.|..
T Consensus 279 ~l~~LlERaG~~~~~~GSI 297 (460)
T PRK04196 279 DLATIYERAGRIKGKKGSI 297 (460)
T ss_pred HhHHHHHHhhcCCCCCeee
Confidence 4566777888864344533
No 327
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=23.85 E-value=1.8e+02 Score=27.41 Aligned_cols=49 Identities=12% Similarity=0.137 Sum_probs=35.4
Q ss_pred CCCCcEEEEeCchHHHHHHHHHHhc---cCCceEEEecCCCCHHHHHHHHHHHhcc
Q 028124 51 RPGLPMIVCCSSRDELDAVCSAVSN---LADISFSSLHSDLAETERTLILEEFRHT 103 (213)
Q Consensus 51 ~~~~~~IIF~~~~~~~~~l~~~L~~---~~~~~~~~lhg~~~~~~R~~~l~~Fr~g 103 (213)
.++..++|+.+|++-+-.+-....+ +| .+..+++|+-+. .+-.++.+.|
T Consensus 292 r~~p~~lvl~ptreLalqie~e~~kysyng-~ksvc~ygggnR---~eqie~lkrg 343 (629)
T KOG0336|consen 292 RNGPGVLVLTPTRELALQIEGEVKKYSYNG-LKSVCVYGGGNR---NEQIEDLKRG 343 (629)
T ss_pred cCCCceEEEeccHHHHHHHHhHHhHhhhcC-cceEEEecCCCc---hhHHHHHhcC
Confidence 4567899999999887766555543 35 788899988654 4456777776
No 328
>COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]
Probab=23.38 E-value=2.3e+02 Score=26.10 Aligned_cols=103 Identities=12% Similarity=0.257 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHhhcCCCCCCcEEEEeC---------chHHHHHHHHHHhccCCceEE--EecCCCCHHH-HHHHHHHHhc
Q 028124 35 KMETLVELLHLVVAGRRPGLPMIVCCS---------SRDELDAVCSAVSNLADISFS--SLHSDLAETE-RTLILEEFRH 102 (213)
Q Consensus 35 K~~~L~~ll~~~~~~~~~~~~~IIF~~---------~~~~~~~l~~~L~~~~~~~~~--~lhg~~~~~~-R~~~l~~Fr~ 102 (213)
-++.|.+.+.. ...+++|.|| |+++...+.+...+.+ +.++ -+|.++-... +-........
T Consensus 146 D~~~LE~~~~~------~~vkl~iLCnPHNP~Grvwt~eeL~~i~elc~kh~-v~VISDEIHaDlv~~g~~h~~~a~ls~ 218 (388)
T COG1168 146 DFDALEKAFVD------ERVKLFILCNPHNPTGRVWTKEELRKIAELCLRHG-VRVISDEIHADLVLGGHKHIPFASLSE 218 (388)
T ss_pred cHHHHHHHHhc------CCccEEEEeCCCCCCCccccHHHHHHHHHHHHHcC-CEEEeecccccccccCCCccchhhcCh
Confidence 34555555444 3358999999 7788888888888776 5554 4888764333 1111111111
Q ss_pred ccccccccccccCCCCCcCCCCCCceeEEEEeCCCCCcCcCCCCCCCCCE--EEEecCCCChHHHHHhhccc
Q 028124 103 TAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARV--LINYELPTKKETYIRRMTTC 172 (213)
Q Consensus 103 g~~~~~~~~~~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~rGld~~~v~~--VI~yd~P~~~~~yi~R~GR~ 172 (213)
. ..-..+.||. ++.+.+++...+ +|. .-+...+.|..|+-+.
T Consensus 219 ~----------------------~a~~~it~~s-----aSKtFNlaGL~~a~~Ii-~n~~lr~~~~~~l~~~ 262 (388)
T COG1168 219 R----------------------FADNSITLTS-----ASKTFNLAGLKCAYIII-SNRELRAKFLKRLKRN 262 (388)
T ss_pred h----------------------hhcceEEEee-----ccccccchhhhheeEEe-cCHHHHHHHHHHHHHh
Confidence 0 0133455555 588889987664 332 2233447888888764
No 329
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=23.25 E-value=2.9e+02 Score=28.51 Aligned_cols=54 Identities=19% Similarity=0.255 Sum_probs=41.7
Q ss_pred CceeEEEEeCCCCCcCcCCCCCCCCCEEEEecCCCChHHHHHhhccc----cC--CCCeEEEEEe
Q 028124 126 HKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTC----LA--ADGSVINIVV 184 (213)
Q Consensus 126 ~~~~iLV~Td~~~~~~~rGld~~~v~~VI~yd~P~~~~~yi~R~GR~----~~--~~g~~i~~~~ 184 (213)
...++||.+|. +--|.|.|-..++. .|=|--.-..+|-+.|+ .+ ..|.++.|+.
T Consensus 592 d~~kilIV~dm----lLTGFDaP~L~TmY-vDK~Lk~H~L~QAisRtNR~~~~~K~~G~IVDf~g 651 (962)
T COG0610 592 DPLDLLIVVDM----LLTGFDAPCLNTLY-VDKPLKYHNLIQAISRTNRVFPGKKKFGLIVDFRG 651 (962)
T ss_pred CCCCEEEEEcc----ccccCCccccceEE-eccccccchHHHHHHHhccCCCCCCCCcEEEECcc
Confidence 35999999999 99999999877655 57776677788877774 33 3488888876
No 330
>PRK06827 phosphoribosylpyrophosphate synthetase; Provisional
Probab=23.19 E-value=2.6e+02 Score=25.65 Aligned_cols=60 Identities=8% Similarity=0.084 Sum_probs=43.7
Q ss_pred CCcEEEE---eCchHHHHHHHHHHhccC--CceEEEecCCCCHHHHHHHHHHHhcccccccccccccCCCCCcCCCCCCc
Q 028124 53 GLPMIVC---CSSRDELDAVCSAVSNLA--DISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHK 127 (213)
Q Consensus 53 ~~~~IIF---~~~~~~~~~l~~~L~~~~--~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~~~~~~~~~~~~~~~~~~~~~~ 127 (213)
++.+||+ +.|-.+....++.|+..| .+.+...||-++ ....++.+.|.+|.
T Consensus 264 gr~vIIVDDII~TG~Tl~~aa~~Lk~~GA~~V~~~~tH~vf~-~a~~~l~~~~~~g~----------------------- 319 (382)
T PRK06827 264 GKDVLIVDDMIASGGSMIDAAKELKSRGAKKIIVAATFGFFT-NGLEKFDKAYEEGY----------------------- 319 (382)
T ss_pred CCEEEEEeCCcCcHHHHHHHHHHHHHcCCCEEEEEEEeecCh-HHHHHHHhhcccCC-----------------------
Confidence 3455554 346677788888888764 366788899888 66666667777763
Q ss_pred eeEEEEeCC
Q 028124 128 SHMIVVTDA 136 (213)
Q Consensus 128 ~~iLV~Td~ 136 (213)
++-+|+||.
T Consensus 320 i~~iv~TdT 328 (382)
T PRK06827 320 FDRIIGTNL 328 (382)
T ss_pred CCEEEEeCC
Confidence 788999997
No 331
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=23.05 E-value=3.2e+02 Score=21.37 Aligned_cols=45 Identities=11% Similarity=0.211 Sum_probs=32.9
Q ss_pred cEEEEeCc-------hHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHH
Q 028124 55 PMIVCCSS-------RDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEF 100 (213)
Q Consensus 55 ~~IIF~~~-------~~~~~~l~~~L~~~~~~~~~~lhg~~~~~~R~~~l~~F 100 (213)
+++||+.+ ...+..+.+.|...+ +....+.=+|+.+.+.++.+..
T Consensus 1 ~VvlYttsl~giR~t~~~C~~ak~iL~~~~-V~~~e~DVs~~~~~~~EL~~~~ 52 (147)
T cd03031 1 RVVLYTTSLRGVRKTFEDCNNVRAILESFR-VKFDERDVSMDSGFREELRELL 52 (147)
T ss_pred CEEEEEcCCcCCCCcChhHHHHHHHHHHCC-CcEEEEECCCCHHHHHHHHHHh
Confidence 35677765 778888989998886 7777777667777777655543
No 332
>PRK01172 ski2-like helicase; Provisional
Probab=22.89 E-value=4.2e+02 Score=25.75 Aligned_cols=61 Identities=16% Similarity=0.110 Sum_probs=39.1
Q ss_pred EEEEecCcchHHHH-HHHHHHHhhcCCCCCCcEEEEeCchHHHHHHHHHHhc---cCCceEEEecCCCCH
Q 028124 25 FYVAVDRLQFKMET-LVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSN---LADISFSSLHSDLAE 90 (213)
Q Consensus 25 ~~~~~~~~~~K~~~-L~~ll~~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~---~~~~~~~~lhg~~~~ 90 (213)
.++..+...=|--. +..+++.+. .+.++|+.++++.-|.+.++.+++ .| +.+...+|+.+.
T Consensus 40 vlv~apTGSGKTl~a~lail~~l~----~~~k~v~i~P~raLa~q~~~~~~~l~~~g-~~v~~~~G~~~~ 104 (674)
T PRK01172 40 VIVSVPTAAGKTLIAYSAIYETFL----AGLKSIYIVPLRSLAMEKYEELSRLRSLG-MRVKISIGDYDD 104 (674)
T ss_pred EEEECCCCchHHHHHHHHHHHHHH----hCCcEEEEechHHHHHHHHHHHHHHhhcC-CeEEEEeCCCCC
Confidence 45555554435543 233334322 256899999999999988887764 34 678888888654
No 333
>PF04110 APG12: Ubiquitin-like autophagy protein Apg12 ; InterPro: IPR007242 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents Apg12, which is covalently bound to Apg5 [].; GO: 0000045 autophagic vacuole assembly, 0005737 cytoplasm; PDB: 1WZ3_B.
Probab=22.67 E-value=2.3e+02 Score=20.32 Aligned_cols=57 Identities=7% Similarity=0.141 Sum_probs=35.7
Q ss_pred CCCceEEEEEecCcchHHHHHHHHHHHhhcCCCCCCcEEEEeCc------hHHHHHHHHHHhccC
Q 028124 19 FSQPRHFYVAVDRLQFKMETLVELLHLVVAGRRPGLPMIVCCSS------RDELDAVCSAVSNLA 77 (213)
Q Consensus 19 ~~~i~~~~~~~~~~~~K~~~L~~ll~~~~~~~~~~~~~IIF~~~------~~~~~~l~~~L~~~~ 77 (213)
.+.+++....++..+ +++.+.+.|+.... ..+...+.+|+|+ .+++..|++.+...|
T Consensus 12 aPilk~~k~kI~~~~-~f~~vi~fLrk~Lk-~~~~~slFlYin~sFaPspDe~vg~L~~~f~~~~ 74 (87)
T PF04110_consen 12 APILKQKKFKISASQ-TFATVIAFLRKKLK-LKPSDSLFLYINNSFAPSPDETVGDLYRCFGTNG 74 (87)
T ss_dssp ----S--EEEEETTS-BTHHHHHHHHHHCT-----SS-EEEEEEEE---TTSBHHHHHHHH-BTT
T ss_pred CccccCcEEEECCCC-chHHHHHHHHHHhC-CccCCeEEEEEcCccCCCchhHHHHHHHHhCCCC
Confidence 456777888888877 99999999987443 2346889999986 456788888888665
No 334
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=22.55 E-value=2.3e+02 Score=18.35 Aligned_cols=44 Identities=5% Similarity=0.037 Sum_probs=29.0
Q ss_pred EEEEe-CchHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHH
Q 028124 56 MIVCC-SSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEF 100 (213)
Q Consensus 56 ~IIF~-~~~~~~~~l~~~L~~~~~~~~~~lhg~~~~~~R~~~l~~F 100 (213)
+.||. +++..|..+...|.+.+ +....+.=+.+++.+..+.+..
T Consensus 2 i~ly~~~~Cp~C~~ak~~L~~~~-i~~~~i~i~~~~~~~~~~~~~~ 46 (75)
T cd03418 2 VEIYTKPNCPYCVRAKALLDKKG-VDYEEIDVDGDPALREEMINRS 46 (75)
T ss_pred EEEEeCCCChHHHHHHHHHHHCC-CcEEEEECCCCHHHHHHHHHHh
Confidence 44555 46677888888888876 7777777666655555544443
No 335
>COG0353 RecR Recombinational DNA repair protein (RecF pathway) [DNA replication, recombination, and repair]
Probab=22.43 E-value=3.6e+02 Score=22.51 Aligned_cols=73 Identities=14% Similarity=0.189 Sum_probs=46.5
Q ss_pred CCcEEEEeCchHHHHHHHHHHhccCCceEEEecCCCCHHHH--------HHHHHHHhcccccccccccccCCCCCcCCCC
Q 028124 53 GLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETER--------TLILEEFRHTAMKWNQKVTEQSGDESETGKD 124 (213)
Q Consensus 53 ~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~lhg~~~~~~R--------~~~l~~Fr~g~~~~~~~~~~~~~~~~~~~~~ 124 (213)
.++.|..|.+.+.+..+-+.=..+| .-.++||-+++-+. ..++++...++
T Consensus 78 d~~~icVVe~p~Dv~a~E~~~~f~G--~YhVL~G~lspl~gigpe~l~i~~L~~Rl~~~~-------------------- 135 (198)
T COG0353 78 DKSQLCVVEEPKDVLALEKTGEFRG--LYHVLGGLLSPLDGIGPEDLNIDELLQRLAEGS-------------------- 135 (198)
T ss_pred CCceEEEEcchHHHHHHHHhcccCe--eEEEecCccCcccCCCcccccHHHHHHHHhcCC--------------------
Confidence 3556777777777666644433444 56777876655432 44666777763
Q ss_pred CCce-eEEEEeCCCCCcCcCCCCCCCCCEEEEecCCCChHHHHHhh
Q 028124 125 EHKS-HMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRM 169 (213)
Q Consensus 125 ~~~~-~iLV~Td~~~~~~~rGld~~~v~~VI~yd~P~~~~~yi~R~ 169 (213)
+ -|++||+. -.+| ...+.|+.+.
T Consensus 136 ---~~EvIlAtnp----TvEG---------------eaTA~YI~~~ 159 (198)
T COG0353 136 ---IKEVILATNP----TVEG---------------EATALYIARL 159 (198)
T ss_pred ---CceEEEecCC----Cccc---------------hHHHHHHHHH
Confidence 5 79999998 6565 3467777665
No 336
>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1.5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction NAD(P)H + FMN = NAD(P)(+) + FMNH(2).; PDB: 3SVL_B 3GFS_F 3GFQ_A 1NNI_1 2GSW_B 3GFR_D 1T0I_B 3D7N_A 2R97_A 3B6K_A ....
Probab=21.65 E-value=3.5e+02 Score=20.24 Aligned_cols=54 Identities=13% Similarity=0.250 Sum_probs=31.2
Q ss_pred eeEEEEeCCCCCcCcCCCCCCCCCEEEEecCCCChHHHHHhhc---c-c-cCCCCeEEEEEe--CchhHHHHHHHHHh
Q 028124 128 SHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMT---T-C-LAADGSVINIVV--GGEVVTLRSMEESL 198 (213)
Q Consensus 128 ~~iLV~Td~~~~~~~rGld~~~v~~VI~yd~P~~~~~yi~R~G---R-~-~~~~g~~i~~~~--~~e~~~~~~le~~l 198 (213)
--++++|++ .++.+|.....++.|.+ + . .++.+..+.... .+.......+...+
T Consensus 72 D~iI~~sP~-----------------y~~~~s~~lK~~lD~~~~~~~~~~~~K~~~~i~~~g~~~g~~~~~~~l~~~~ 132 (152)
T PF03358_consen 72 DGIIFASPV-----------------YNGSVSGQLKNFLDRLSCWFRRALRGKPVAIIAVGGGRRGGLRALEQLRQIL 132 (152)
T ss_dssp SEEEEEEEE-----------------BTTBE-HHHHHHHHTHHHTHTTTTTTSEEEEEEEESSSSTTHHHHHHHHHHH
T ss_pred CeEEEeecE-----------------EcCcCChhhhHHHHHhccccccccCCCEEEEEEEecCCcHHHHHHHHHHHHH
Confidence 457888886 45677888999999997 3 2 344444443332 23444444444443
No 337
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=21.44 E-value=2.5e+02 Score=27.21 Aligned_cols=48 Identities=10% Similarity=0.107 Sum_probs=34.7
Q ss_pred CCCCcEEEEeCchHHHHHHHHHHhc-cCCceEEEecCCCCHHHHHHHHHHHhc
Q 028124 51 RPGLPMIVCCSSRDELDAVCSAVSN-LADISFSSLHSDLAETERTLILEEFRH 102 (213)
Q Consensus 51 ~~~~~~IIF~~~~~~~~~l~~~L~~-~~~~~~~~lhg~~~~~~R~~~l~~Fr~ 102 (213)
-...+++|.|++.+-.+|+-+.=+. .|..++..+||. .|.+..++|.+
T Consensus 229 ~~ra~tLVvaP~VAlmQW~nEI~~~T~gslkv~~YhG~----~R~~nikel~~ 277 (791)
T KOG1002|consen 229 VDRAPTLVVAPTVALMQWKNEIERHTSGSLKVYIYHGA----KRDKNIKELMN 277 (791)
T ss_pred cccCCeeEEccHHHHHHHHHHHHHhccCceEEEEEecc----cccCCHHHhhc
Confidence 4567899999999887776443321 255789999994 66777777776
No 338
>PHA03371 circ protein; Provisional
Probab=21.38 E-value=74 Score=27.12 Aligned_cols=32 Identities=13% Similarity=0.174 Sum_probs=20.5
Q ss_pred CcCCCCCCCCCEE-EE------------ecCCC-ChHHHHHhhccc
Q 028124 141 LSSGESAISARVL-IN------------YELPT-KKETYIRRMTTC 172 (213)
Q Consensus 141 ~~rGld~~~v~~V-I~------------yd~P~-~~~~yi~R~GR~ 172 (213)
++|-+|+|+=+-+ |. |-.|. +--.|+|.|||+
T Consensus 30 aGR~vDLPgGde~~If~~~g~T~~~~g~f~~~g~~r~~~v~fIGRA 75 (240)
T PHA03371 30 AGRTVDLPGGDELRIFADCGTTTVNFGKFVRPGSSRLAYVKFIGRA 75 (240)
T ss_pred cCcceecCCCCeEEEeccCCCCccceeeEecCCCCcceeeeeeehh
Confidence 4566666666655 53 33343 556789999996
No 339
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=21.34 E-value=1.7e+02 Score=26.58 Aligned_cols=36 Identities=19% Similarity=0.263 Sum_probs=30.0
Q ss_pred CCcEEEEeCchHHHHHHHHHHhccCCce--EEEecCCCC
Q 028124 53 GLPMIVCCSSRDELDAVCSAVSNLADIS--FSSLHSDLA 89 (213)
Q Consensus 53 ~~~~IIF~~~~~~~~~l~~~L~~~~~~~--~~~lhg~~~ 89 (213)
..+++++|.+-.+....++.|++.| +. +..+.|++.
T Consensus 332 ~~~Ivv~C~sG~RS~~Aa~~L~~~G-~~~~v~~l~GG~~ 369 (370)
T PRK05600 332 GDNVVVYCASGIRSADFIEKYSHLG-HELTLHNLPGGVN 369 (370)
T ss_pred CCcEEEECCCChhHHHHHHHHHHcC-CCCceEEeccccC
Confidence 3489999999999999999999988 44 677888874
No 340
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=21.23 E-value=8.6e+02 Score=24.56 Aligned_cols=100 Identities=15% Similarity=0.071 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHhhcCCCCCCcEEEEeCchHHHHHHHHHHhccC------CceEEEecCCCCHHHHHHHHHHHhccccccc
Q 028124 35 KMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLA------DISFSSLHSDLAETERTLILEEFRHTAMKWN 108 (213)
Q Consensus 35 K~~~L~~ll~~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~------~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~~~ 108 (213)
-++-|..++..+.+ -- .+-+++|.++.+-...+.+.....| ..+.+.....-+ -..+++.|....
T Consensus 613 ~l~~l~~~~~nL~~-~V-PgGvV~FfPSy~yL~~v~k~w~~~gil~ri~~kK~vF~E~k~~---~~dvl~~Ya~a~---- 683 (821)
T KOG1133|consen 613 MIKDLGSSISNLSN-AV-PGGVVCFFPSYAYLGQVRKRWEQNGILARIVGKKKVFYEPKDT---VEDVLEGYAEAA---- 683 (821)
T ss_pred HHHHHHHHHHHHHh-hC-CCcEEEEeccHHHHHHHHHHHHhcchHHHhhccchhhccCccc---HHHHHHHHHHHh----
Confidence 44455555555443 12 3679999999988888877776543 112222222222 345677776642
Q ss_pred ccccccCCCCCcCCCCCCceeEEEEeCCCCCcCcCCCCCCC--CCEEEEecCCC
Q 028124 109 QKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAIS--ARVLINYELPT 160 (213)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~rGld~~~--v~~VI~yd~P~ 160 (213)
+.+.|-+=+=|.--- +++||+|.| .+.||...+|.
T Consensus 684 -------------~~g~GaiLlaVVGGK----lSEGINF~D~LgRaVvvVGlPy 720 (821)
T KOG1133|consen 684 -------------ERGRGAILLAVVGGK----LSEGINFSDDLGRAVVVVGLPY 720 (821)
T ss_pred -------------hcCCCeEEEEEeccc----cccccccccccccEEEEeecCC
Confidence 000011222222333 799999986 57788877765
No 341
>PRK03692 putative UDP-N-acetyl-D-mannosaminuronic acid transferase; Provisional
Probab=21.06 E-value=5.2e+02 Score=21.96 Aligned_cols=64 Identities=11% Similarity=0.202 Sum_probs=43.3
Q ss_pred HHHHHHHHHhhcCCCCCCcEEEEeCchHHHHHHHHHHhccCCceEE-EecCCCCHHHHHHHHHHHhcc
Q 028124 37 ETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFS-SLHSDLAETERTLILEEFRHT 103 (213)
Q Consensus 37 ~~L~~ll~~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~-~lhg~~~~~~R~~~l~~Fr~g 103 (213)
+++.++++... ..+.++.++-.+...++.+++.|+..-++.++ ..||-.++++...++++....
T Consensus 92 dl~~~ll~~~~---~~~~~v~llG~~~~v~~~a~~~l~~~y~l~i~g~~~Gyf~~~e~~~i~~~I~~s 156 (243)
T PRK03692 92 DLWEALMARAG---KEGTPVFLVGGKPEVLAQTEAKLRTQWNVNIVGSQDGYFTPEQRQALFERIHAS 156 (243)
T ss_pred HHHHHHHHHHH---hcCCeEEEECCCHHHHHHHHHHHHHHhCCEEEEEeCCCCCHHHHHHHHHHHHhc
Confidence 34445554311 24568888888888899999999654136655 456777777777788887765
No 342
>PRK15327 type III secretion system needle complex protein PrgH; Provisional
Probab=21.02 E-value=6.7e+02 Score=23.18 Aligned_cols=73 Identities=8% Similarity=-0.059 Sum_probs=45.7
Q ss_pred EecCcchHHHHHHHHHHHhhc----CCCCCCcEEEEeCchHHHHHHHHHHhccCC-ceEEEecCCCCHHHHHHHHHHHhc
Q 028124 28 AVDRLQFKMETLVELLHLVVA----GRRPGLPMIVCCSSRDELDAVCSAVSNLAD-ISFSSLHSDLAETERTLILEEFRH 102 (213)
Q Consensus 28 ~~~~~~~K~~~L~~ll~~~~~----~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~-~~~~~lhg~~~~~~R~~~l~~Fr~ 102 (213)
...+.+.|...|..+|..-.. .....+++.|.+++.+.++|..+.|.+.+. -.+..+. ..+++.++-+....
T Consensus 164 ~~ns~~~~v~tL~~~L~g~~~p~~Il~grD~~iyVLa~~qrd~~W~~Q~L~k~~~~~~v~v~~---~~~~~~~ie~~L~~ 240 (393)
T PRK15327 164 ILNSPQRQAAELDSLLGQEKERFQVLPGRDKMLYVAAQNERDTLWARQSLARGDYDKNARVIN---ENEENKRVSTWLDT 240 (393)
T ss_pred ecCchHHHHHHHHHHhcCCCCceEEEeCCCCcEEEEEccccHhHHHHHHHhhCCCcCceEEec---hHHHHHHHHHHHHh
Confidence 334445599999999964110 011235899999999999999999987531 1333332 34555555555555
Q ss_pred c
Q 028124 103 T 103 (213)
Q Consensus 103 g 103 (213)
.
T Consensus 241 ~ 241 (393)
T PRK15327 241 Y 241 (393)
T ss_pred c
Confidence 3
No 343
>TIGR02744 TrbI_Ftype type-F conjugative transfer system protein TrbI. This protein is an essential component of the F-type conjugative transfer sytem for plasmid DNA transfer and has been shown to be localized to the periplasm.
Probab=20.87 E-value=3.8e+02 Score=20.25 Aligned_cols=41 Identities=24% Similarity=0.384 Sum_probs=32.1
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhc
Q 028124 52 PGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRH 102 (213)
Q Consensus 52 ~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~lhg~~~~~~R~~~l~~Fr~ 102 (213)
...|.+|-++-+.+.+...+.+.... ++++++.+..++|..
T Consensus 29 ~~~P~iV~fdmk~tld~F~~q~~~~~----------lte~q~~~~~~rF~~ 69 (112)
T TIGR02744 29 LNSPVTVAFDMKQTLDAFFDSASQKK----------LSEAQQKALLGRFNA 69 (112)
T ss_pred cCCCeEEEEecHHHHHHHHHHHhhcC----------CCHHHHHHHHHHHHH
Confidence 34577887799999999988886553 788888888888755
No 344
>COG1922 WecG Teichoic acid biosynthesis proteins [Cell envelope biogenesis, outer membrane]
Probab=20.61 E-value=5.6e+02 Score=22.14 Aligned_cols=65 Identities=11% Similarity=0.158 Sum_probs=45.8
Q ss_pred HHHHHHHHHHhhcCCCCCCcEEEEeCchHHHHHHHHHHhcc-CCceEEEec-CCCCHHHHHHHHHHHhcc
Q 028124 36 METLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNL-ADISFSSLH-SDLAETERTLILEEFRHT 103 (213)
Q Consensus 36 ~~~L~~ll~~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~-~~~~~~~lh-g~~~~~~R~~~l~~Fr~g 103 (213)
.++...+++.. ..++.++..+-.+...++..+..|++. +.++++..| |-.++++...++++...-
T Consensus 94 ~Dl~~~Ll~~a---~~~~~~vfllGgkp~V~~~a~~~l~~~~p~l~ivg~h~GYf~~~e~~~i~~~I~~s 160 (253)
T COG1922 94 TDLVEALLKRA---AEEGKRVFLLGGKPGVAEQAAAKLRAKYPGLKIVGSHDGYFDPEEEEAIVERIAAS 160 (253)
T ss_pred HHHHHHHHHHh---CccCceEEEecCCHHHHHHHHHHHHHHCCCceEEEecCCCCChhhHHHHHHHHHhc
Confidence 34455555541 124578888888888888898999765 446766666 888888888888888775
No 345
>COG1609 PurR Transcriptional regulators [Transcription]
Probab=20.47 E-value=5.8e+02 Score=22.31 Aligned_cols=31 Identities=10% Similarity=-0.010 Sum_probs=20.4
Q ss_pred EEeCchHHHHHHHHHHhccCCceEEEecCCC
Q 028124 58 VCCSSRDELDAVCSAVSNLADISFSSLHSDL 88 (213)
Q Consensus 58 IF~~~~~~~~~l~~~L~~~~~~~~~~lhg~~ 88 (213)
|..+....+....+.|...|+-++..+.|..
T Consensus 155 V~~Dn~~~~~~a~~~L~~~G~~~i~~i~~~~ 185 (333)
T COG1609 155 VGIDNFAGAYLATEHLIELGHRRIAFIGGPL 185 (333)
T ss_pred EEEChHHHHHHHHHHHHHCCCceEEEEeCCC
Confidence 4445666677777777777655677777753
No 346
>cd04823 ALAD_PBGS_aspartate_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. All of PBGS_aspartate_rich contain an aspartate rich metal binding site with the general sequence DXALDX(Y/F)X3G(H/Q)DG. They also contain an allosteric magnesiu
Probab=20.19 E-value=1.9e+02 Score=25.89 Aligned_cols=28 Identities=25% Similarity=0.173 Sum_probs=18.6
Q ss_pred chHHHHHHHHHHhccCCceEEEecCCCCH
Q 028124 62 SRDELDAVCSAVSNLADISFSSLHSDLAE 90 (213)
Q Consensus 62 ~~~~~~~l~~~L~~~~~~~~~~lhg~~~~ 90 (213)
+.+.+....+.+.+.| ++.+.+.|-.+.
T Consensus 52 s~d~l~~~v~~~~~~G-i~~v~lFgv~~~ 79 (320)
T cd04823 52 SIDELLKEAEEAVDLG-IPAVALFPVTPP 79 (320)
T ss_pred CHHHHHHHHHHHHHcC-CCEEEEecCCCc
Confidence 4555666666666677 788888876543
Done!