Query 028124
Match_columns 213
No_of_seqs 147 out of 1292
Neff 7.2
Searched_HMMs 29240
Date Mon Mar 25 10:30:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028124.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028124hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1fuk_A Eukaryotic initiation f 100.0 2.3E-32 7.9E-37 217.0 18.8 161 20-213 2-164 (165)
2 2hjv_A ATP-dependent RNA helic 100.0 4.5E-32 1.5E-36 215.1 19.2 157 16-206 4-162 (163)
3 1t5i_A C_terminal domain of A 100.0 3.7E-32 1.3E-36 217.9 18.7 159 18-210 2-163 (172)
4 2rb4_A ATP-dependent RNA helic 100.0 5.6E-32 1.9E-36 216.6 18.6 161 18-211 4-172 (175)
5 2jgn_A DBX, DDX3, ATP-dependen 100.0 2.5E-31 8.6E-36 215.7 15.9 164 15-211 13-178 (185)
6 2p6n_A ATP-dependent RNA helic 100.0 1.6E-30 5.4E-35 212.3 16.0 160 17-211 25-187 (191)
7 3eaq_A Heat resistant RNA depe 100.0 1.1E-29 3.8E-34 209.9 19.1 155 20-208 4-160 (212)
8 3i32_A Heat resistant RNA depe 100.0 5.1E-29 1.8E-33 216.9 19.0 154 21-208 2-157 (300)
9 2yjt_D ATP-dependent RNA helic 99.9 3.8E-31 1.3E-35 211.1 0.0 157 19-208 1-159 (170)
10 2j0s_A ATP-dependent RNA helic 100.0 1E-27 3.6E-32 212.6 18.6 164 17-213 245-410 (410)
11 2db3_A ATP-dependent RNA helic 100.0 4.2E-27 1.4E-31 212.8 19.0 159 18-211 272-433 (434)
12 3eiq_A Eukaryotic initiation f 99.9 2.6E-27 8.9E-32 209.4 16.2 165 16-213 248-414 (414)
13 1s2m_A Putative ATP-dependent 99.9 2.3E-26 7.9E-31 203.1 19.6 161 18-212 229-391 (400)
14 1xti_A Probable ATP-dependent 99.9 2.6E-25 8.8E-30 195.2 20.9 160 17-210 220-382 (391)
15 2i4i_A ATP-dependent RNA helic 99.9 3.2E-26 1.1E-30 202.9 15.1 162 17-211 245-408 (417)
16 3fht_A ATP-dependent RNA helic 99.9 2.2E-25 7.4E-30 196.7 17.0 160 17-209 235-403 (412)
17 1hv8_A Putative ATP-dependent 99.9 7.3E-25 2.5E-29 189.9 18.1 154 19-207 211-366 (367)
18 3pey_A ATP-dependent RNA helic 99.9 2E-24 6.7E-29 189.0 17.4 159 17-208 212-380 (395)
19 3i5x_A ATP-dependent RNA helic 99.9 3.8E-24 1.3E-28 198.0 20.0 161 16-205 302-468 (563)
20 3sqw_A ATP-dependent RNA helic 99.9 8.5E-24 2.9E-28 197.2 20.0 161 16-205 251-417 (579)
21 1fuu_A Yeast initiation factor 99.9 1.9E-26 6.4E-31 202.4 0.0 163 18-213 229-393 (394)
22 3fmp_B ATP-dependent RNA helic 99.9 1.5E-25 5.1E-30 203.9 0.0 159 17-208 302-469 (479)
23 1oyw_A RECQ helicase, ATP-depe 99.9 1.6E-22 5.6E-27 187.4 18.4 142 18-195 209-352 (523)
24 2v1x_A ATP-dependent DNA helic 99.9 2E-22 6.9E-27 189.6 17.4 146 17-194 234-382 (591)
25 3oiy_A Reverse gyrase helicase 99.9 2.3E-22 8E-27 179.2 15.1 145 16-206 225-385 (414)
26 3tbk_A RIG-I helicase domain; 99.9 2.3E-23 7.9E-28 190.0 8.2 134 33-194 370-515 (555)
27 3fho_A ATP-dependent RNA helic 99.9 4.4E-23 1.5E-27 190.1 7.3 160 17-209 326-494 (508)
28 4a2p_A RIG-I, retinoic acid in 99.9 2.5E-22 8.7E-27 183.7 12.2 127 33-189 371-511 (556)
29 2ykg_A Probable ATP-dependent 99.9 1.1E-22 3.7E-27 192.3 8.5 146 32-206 378-540 (696)
30 2z0m_A 337AA long hypothetical 99.9 9.4E-22 3.2E-26 168.7 12.8 141 19-200 194-336 (337)
31 4gl2_A Interferon-induced heli 99.9 2.8E-22 9.6E-27 189.6 9.8 122 34-185 381-517 (699)
32 1wp9_A ATP-dependent RNA helic 99.9 3.3E-21 1.1E-25 171.1 12.5 129 31-188 340-477 (494)
33 2d7d_A Uvrabc system protein B 99.9 1.4E-20 4.7E-25 179.1 17.3 144 35-209 430-588 (661)
34 1c4o_A DNA nucleotide excision 99.8 2.8E-20 9.6E-25 177.0 17.1 129 35-194 424-558 (664)
35 1z5z_A Helicase of the SNF2/RA 99.8 2.4E-20 8.3E-25 159.8 14.1 136 32-197 94-237 (271)
36 4a2q_A RIG-I, retinoic acid in 99.8 1.1E-20 3.8E-25 182.5 12.6 126 33-188 612-751 (797)
37 1tf5_A Preprotein translocase 99.8 1.2E-20 4E-25 182.2 11.3 129 26-188 409-547 (844)
38 4a2w_A RIG-I, retinoic acid in 99.8 2.2E-20 7.5E-25 183.7 12.0 126 33-188 612-751 (936)
39 3dmq_A RNA polymerase-associat 99.8 3E-19 1E-23 176.2 15.3 121 32-183 487-610 (968)
40 3jux_A Protein translocase sub 99.8 4.6E-19 1.6E-23 168.9 15.9 128 27-188 452-589 (822)
41 4ddu_A Reverse gyrase; topoiso 99.8 1.6E-19 5.5E-24 180.1 13.3 140 16-199 282-503 (1104)
42 1yks_A Genome polyprotein [con 99.8 6E-20 2.1E-24 166.7 8.8 114 53-199 177-315 (440)
43 2whx_A Serine protease/ntpase/ 99.8 3.1E-19 1.1E-23 168.7 11.6 115 53-200 355-495 (618)
44 1gku_B Reverse gyrase, TOP-RG; 99.8 6.1E-19 2.1E-23 175.3 12.9 140 17-200 249-468 (1054)
45 2fsf_A Preprotein translocase 99.8 1.3E-18 4.4E-23 167.8 14.1 129 26-188 418-585 (853)
46 2xau_A PRE-mRNA-splicing facto 99.8 3E-19 1E-23 172.6 7.9 140 20-188 272-445 (773)
47 2wv9_A Flavivirin protease NS2 99.8 9.5E-19 3.2E-23 166.8 9.6 115 52-199 409-549 (673)
48 1nkt_A Preprotein translocase 99.8 7.3E-18 2.5E-22 163.2 15.2 129 26-188 437-619 (922)
49 2z83_A Helicase/nucleoside tri 99.8 4.7E-19 1.6E-23 161.6 5.5 101 53-186 190-313 (459)
50 1z63_A Helicase of the SNF2/RA 99.7 9.8E-18 3.4E-22 152.8 12.9 124 33-186 324-453 (500)
51 2va8_A SSO2462, SKI2-type heli 99.7 2.2E-17 7.5E-22 157.3 15.6 139 35-208 241-429 (715)
52 2zj8_A DNA helicase, putative 99.7 1.4E-17 4.7E-22 159.0 12.8 138 35-208 226-407 (720)
53 2xgj_A ATP-dependent RNA helic 99.7 1.8E-17 6.1E-22 164.1 13.5 116 52-194 342-508 (1010)
54 2fwr_A DNA repair protein RAD2 99.7 4.7E-18 1.6E-22 153.9 8.6 116 33-186 334-454 (472)
55 2eyq_A TRCF, transcription-rep 99.7 1.1E-17 3.9E-22 167.5 12.1 147 5-186 772-922 (1151)
56 1z3i_X Similar to RAD54-like; 99.7 7.1E-17 2.4E-21 152.9 15.9 139 33-198 398-542 (644)
57 2p6r_A Afuhel308 helicase; pro 99.7 2.5E-17 8.4E-22 156.9 12.8 137 35-207 231-407 (702)
58 3l9o_A ATP-dependent RNA helic 99.7 2.3E-17 7.9E-22 164.7 12.7 116 51-194 439-606 (1108)
59 2jlq_A Serine protease subunit 99.7 1.4E-17 4.9E-22 151.3 9.7 99 53-184 188-309 (451)
60 3o8b_A HCV NS3 protease/helica 99.7 5.5E-18 1.9E-22 161.0 6.6 120 52-208 395-540 (666)
61 3rc3_A ATP-dependent RNA helic 99.7 1.2E-16 4E-21 152.5 14.0 117 54-198 321-456 (677)
62 3mwy_W Chromo domain-containin 99.7 1.5E-16 5.3E-21 153.9 14.5 140 33-200 555-700 (800)
63 2oca_A DAR protein, ATP-depend 99.7 7.3E-17 2.5E-21 147.4 10.6 108 35-173 332-440 (510)
64 4a4z_A Antiviral helicase SKI2 99.7 1.3E-16 4.6E-21 157.7 12.9 135 25-194 314-502 (997)
65 3h1t_A Type I site-specific re 99.7 1.8E-16 6.2E-21 147.8 12.1 99 51-174 437-542 (590)
66 1gm5_A RECG; helicase, replica 99.7 1.8E-17 6.3E-22 160.2 4.2 122 35-186 563-697 (780)
67 2v6i_A RNA helicase; membrane, 99.7 2.6E-16 9E-21 142.3 10.4 98 53-183 171-288 (431)
68 4f92_B U5 small nuclear ribonu 99.5 1.2E-13 4E-18 142.9 12.5 148 20-194 282-481 (1724)
69 4f92_B U5 small nuclear ribonu 99.5 1.7E-13 5.8E-18 141.7 12.9 117 51-194 1153-1316(1724)
70 2w00_A HSDR, R.ECOR124I; ATP-b 99.2 1.2E-10 3.9E-15 115.8 12.5 106 52-185 536-708 (1038)
71 2vl7_A XPD; helicase, unknown 98.3 2.4E-06 8.1E-11 79.1 9.5 88 37-160 370-463 (540)
72 3hgt_A HDA1 complex subunit 3; 97.9 0.00017 5.8E-09 63.0 13.4 119 34-188 109-239 (328)
73 2ipc_A Preprotein translocase 97.1 0.0074 2.5E-07 59.2 13.6 44 28-74 421-464 (997)
74 4a15_A XPD helicase, ATP-depen 96.5 0.0041 1.4E-07 58.5 7.0 77 52-160 447-527 (620)
75 1gm5_A RECG; helicase, replica 95.4 0.064 2.2E-06 51.8 9.7 82 52-160 416-501 (780)
76 3crv_A XPD/RAD3 related DNA he 94.6 0.19 6.4E-06 46.2 10.0 89 36-160 378-473 (551)
77 3oiy_A Reverse gyrase helicase 94.2 0.13 4.5E-06 44.7 7.8 85 51-158 62-148 (414)
78 4ddu_A Reverse gyrase; topoiso 91.0 0.95 3.2E-05 45.3 9.8 108 25-158 96-205 (1104)
79 3ber_A Probable ATP-dependent 90.3 1.9 6.6E-05 34.9 9.6 104 25-157 83-194 (249)
80 2eyq_A TRCF, transcription-rep 90.0 1.8 6E-05 43.5 10.7 80 52-158 651-734 (1151)
81 1oyw_A RECQ helicase, ATP-depe 89.2 0.9 3.1E-05 41.4 7.3 51 53-104 65-115 (523)
82 2gxq_A Heat resistant RNA depe 88.4 1.9 6.5E-05 33.2 7.8 106 25-157 41-152 (207)
83 2v1x_A ATP-dependent DNA helic 88.3 1 3.5E-05 41.8 7.1 48 53-101 84-131 (591)
84 3gk5_A Uncharacterized rhodane 88.2 0.83 2.8E-05 32.3 5.2 37 51-88 53-89 (108)
85 1t6n_A Probable ATP-dependent 87.8 6.6 0.00022 30.5 10.8 107 25-158 54-167 (220)
86 3fe2_A Probable ATP-dependent 87.2 2.2 7.4E-05 34.1 7.8 106 25-157 69-184 (242)
87 2oxc_A Probable ATP-dependent 86.1 5.5 0.00019 31.4 9.6 104 25-157 64-174 (230)
88 2jtq_A Phage shock protein E; 86.1 2.2 7.5E-05 28.5 6.1 38 51-89 39-76 (85)
89 3iuy_A Probable ATP-dependent 85.3 2 6.8E-05 33.8 6.5 79 52-157 93-175 (228)
90 1gmx_A GLPE protein; transfera 84.7 1.6 5.5E-05 30.6 5.1 39 51-89 56-94 (108)
91 3foj_A Uncharacterized protein 84.2 1.1 3.9E-05 31.0 4.1 37 51-88 54-90 (100)
92 3iwh_A Rhodanese-like domain p 83.1 1.1 3.8E-05 31.7 3.7 37 51-88 54-90 (103)
93 3g5j_A Putative ATP/GTP bindin 83.0 1.2 4.1E-05 32.1 3.9 35 54-89 90-125 (134)
94 1wv9_A Rhodanese homolog TT165 82.9 1.4 4.9E-05 30.1 4.1 35 54-89 54-88 (94)
95 3bor_A Human initiation factor 82.8 16 0.00054 28.8 11.5 106 25-157 70-181 (237)
96 3eme_A Rhodanese-like domain p 82.8 1.2 4.1E-05 31.0 3.7 37 51-88 54-90 (103)
97 3hix_A ALR3790 protein; rhodan 82.1 1.5 5.1E-05 30.8 4.0 38 51-88 50-87 (106)
98 1vec_A ATP-dependent RNA helic 81.8 15 0.00051 27.9 14.1 105 25-157 43-154 (206)
99 1xti_A Probable ATP-dependent 81.5 15 0.00051 30.7 10.9 106 25-157 48-160 (391)
100 3ly5_A ATP-dependent RNA helic 81.2 5.2 0.00018 32.5 7.6 79 52-157 125-209 (262)
101 3flh_A Uncharacterized protein 80.9 1.6 5.4E-05 31.6 3.9 37 51-88 69-107 (124)
102 1tq1_A AT5G66040, senescence-a 79.3 1.9 6.5E-05 31.4 3.9 39 51-89 80-118 (129)
103 1qde_A EIF4A, translation init 78.9 8.2 0.00028 29.9 7.8 104 25-157 54-163 (224)
104 3fmo_B ATP-dependent RNA helic 78.4 9.6 0.00033 31.7 8.5 103 24-157 133-243 (300)
105 2k0z_A Uncharacterized protein 77.6 3.3 0.00011 29.2 4.6 38 51-89 54-91 (110)
106 3dkp_A Probable ATP-dependent 77.3 3 0.0001 33.2 4.9 107 25-157 69-183 (245)
107 1wp9_A ATP-dependent RNA helic 77.3 11 0.00038 32.1 8.8 94 35-158 36-134 (494)
108 2fsx_A RV0390, COG0607: rhodan 77.0 2.7 9.1E-05 31.3 4.2 38 52-89 79-116 (148)
109 1fuu_A Yeast initiation factor 76.5 13 0.00045 31.1 8.9 104 25-157 61-170 (394)
110 1wrb_A DJVLGB; RNA helicase, D 76.4 6.6 0.00022 31.3 6.7 78 53-157 100-182 (253)
111 2pl3_A Probable ATP-dependent 76.3 5.4 0.00019 31.4 6.1 78 52-157 96-179 (236)
112 1gku_B Reverse gyrase, TOP-RG; 75.9 6.5 0.00022 39.0 7.7 79 52-157 98-183 (1054)
113 1qxn_A SUD, sulfide dehydrogen 75.6 2.4 8.4E-05 31.3 3.6 38 51-88 80-117 (137)
114 2hhg_A Hypothetical protein RP 75.2 2.3 7.8E-05 31.1 3.3 37 52-88 85-121 (139)
115 3d1p_A Putative thiosulfate su 75.0 2.8 9.5E-05 30.7 3.8 39 51-89 89-127 (139)
116 2j0s_A ATP-dependent RNA helic 74.8 27 0.00091 29.5 10.6 104 25-156 77-186 (410)
117 3tbk_A RIG-I helicase domain; 74.7 8.8 0.0003 33.8 7.7 77 53-157 52-135 (555)
118 3ilm_A ALR3790 protein; rhodan 74.6 2.9 9.8E-05 31.1 3.8 38 51-88 54-91 (141)
119 3nhv_A BH2092 protein; alpha-b 73.8 2.7 9.3E-05 31.3 3.5 37 51-88 70-108 (144)
120 2l82_A Designed protein OR32; 73.1 13 0.00045 27.2 6.8 47 56-103 5-51 (162)
121 2db3_A ATP-dependent RNA helic 72.5 5.7 0.0002 34.7 5.8 106 25-157 96-211 (434)
122 1s2m_A Putative ATP-dependent 72.5 37 0.0013 28.4 10.9 106 25-158 61-172 (400)
123 4a2p_A RIG-I, retinoic acid in 72.4 13 0.00045 32.8 8.3 78 53-158 55-139 (556)
124 2i4i_A ATP-dependent RNA helic 72.4 9.9 0.00034 32.2 7.2 77 54-157 102-183 (417)
125 2lnd_A De novo designed protei 71.8 22 0.00074 24.5 8.0 62 37-103 38-101 (112)
126 1vee_A Proline-rich protein fa 70.9 3.6 0.00012 30.1 3.5 38 52-89 73-110 (134)
127 4a2q_A RIG-I, retinoic acid in 69.2 17 0.00059 34.4 8.7 77 53-157 296-379 (797)
128 1q0u_A Bstdead; DEAD protein, 67.4 16 0.00054 28.3 6.9 105 25-157 44-158 (219)
129 1urh_A 3-mercaptopyruvate sulf 64.8 11 0.00038 30.7 5.7 39 51-89 228-266 (280)
130 3i2v_A Adenylyltransferase and 64.7 4.1 0.00014 28.9 2.6 36 54-89 73-114 (127)
131 1hv8_A Putative ATP-dependent 64.0 58 0.002 26.5 10.9 105 24-157 46-155 (367)
132 2fsf_A Preprotein translocase 63.5 17 0.00058 35.4 7.3 42 52-94 114-159 (853)
133 2b4a_A BH3024; flavodoxin-like 61.3 37 0.0013 23.4 11.3 114 26-177 18-133 (138)
134 3tg1_B Dual specificity protei 61.1 7.7 0.00026 29.1 3.7 35 53-88 93-136 (158)
135 1tf5_A Preprotein translocase 60.8 26 0.0009 34.0 8.1 43 52-95 123-169 (844)
136 3eiq_A Eukaryotic initiation f 60.6 10 0.00036 32.0 4.9 80 52-157 107-191 (414)
137 3hjh_A Transcription-repair-co 59.7 89 0.003 28.0 11.1 74 23-104 16-102 (483)
138 2eg4_A Probable thiosulfate su 59.3 8 0.00027 30.7 3.7 38 51-89 182-219 (230)
139 4f67_A UPF0176 protein LPG2838 58.7 9.9 0.00034 31.7 4.3 39 51-89 179-217 (265)
140 1e0c_A Rhodanese, sulfurtransf 58.5 11 0.00038 30.5 4.6 38 51-88 221-258 (271)
141 3hzu_A Thiosulfate sulfurtrans 58.4 15 0.00053 30.8 5.5 49 38-88 98-147 (318)
142 3aay_A Putative thiosulfate su 57.9 20 0.0007 29.0 6.1 49 38-88 213-262 (277)
143 3dmn_A Putative DNA helicase; 57.4 51 0.0017 24.9 8.0 89 25-159 36-124 (174)
144 1urh_A 3-mercaptopyruvate sulf 57.0 13 0.00044 30.4 4.7 50 37-88 72-122 (280)
145 1uar_A Rhodanese; sulfurtransf 56.0 20 0.0007 29.1 5.8 50 37-88 219-269 (285)
146 1nkt_A Preprotein translocase 55.5 37 0.0013 33.4 8.1 43 52-95 151-197 (922)
147 4a2w_A RIG-I, retinoic acid in 55.3 24 0.00082 34.3 7.0 77 53-157 296-379 (936)
148 2ykg_A Probable ATP-dependent 55.2 13 0.00044 34.3 4.9 79 54-159 62-146 (696)
149 3aay_A Putative thiosulfate su 54.5 22 0.00075 28.8 5.7 38 51-88 75-113 (277)
150 2z0m_A 337AA long hypothetical 54.3 83 0.0028 25.2 9.9 99 25-157 34-137 (337)
151 3h11_B Caspase-8; cell death, 53.8 28 0.00096 28.8 6.3 50 52-103 16-86 (271)
152 1e0c_A Rhodanese, sulfurtransf 53.3 20 0.00067 29.0 5.2 38 51-88 79-117 (271)
153 2dko_A Caspase-3; low barrier 53.2 52 0.0018 24.6 7.2 49 53-103 16-78 (146)
154 2wlr_A Putative thiosulfate su 51.8 21 0.00071 31.2 5.5 51 37-89 189-239 (423)
155 1uar_A Rhodanese; sulfurtransf 51.1 18 0.00063 29.4 4.8 39 51-89 77-116 (285)
156 2ipc_A Preprotein translocase 50.7 51 0.0018 32.6 8.3 44 52-96 119-166 (997)
157 3b6e_A Interferon-induced heli 49.8 16 0.00054 27.7 3.9 40 52-91 81-123 (216)
158 3h11_A CAsp8 and FADD-like apo 49.7 13 0.00045 31.0 3.6 50 52-103 42-91 (272)
159 3e4c_A Caspase-1; zymogen, inf 49.0 35 0.0012 28.8 6.2 47 54-102 61-118 (302)
160 1c4o_A DNA nucleotide excision 48.9 1.5E+02 0.005 27.6 11.0 73 24-103 31-129 (664)
161 2eg4_A Probable thiosulfate su 48.6 39 0.0013 26.5 6.2 45 38-87 50-95 (230)
162 1rhs_A Sulfur-substituted rhod 47.1 24 0.00081 29.1 4.8 39 51-89 238-276 (296)
163 3sir_A Caspase; hydrolase; 2.6 46.4 46 0.0016 27.3 6.4 39 63-103 43-81 (259)
164 4fn4_A Short chain dehydrogena 46.0 1.1E+02 0.0036 24.9 8.6 42 52-94 30-71 (254)
165 4dad_A Putative pilus assembly 45.5 73 0.0025 22.1 7.7 74 22-103 19-92 (146)
166 2h54_A Caspase-1; allosteric s 44.5 60 0.002 25.1 6.5 48 53-102 43-101 (178)
167 4e7p_A Response regulator; DNA 44.5 79 0.0027 22.1 7.5 70 25-103 22-91 (150)
168 3sxu_A DNA polymerase III subu 44.4 46 0.0016 25.0 5.7 40 34-76 23-62 (150)
169 2ouc_A Dual specificity protei 43.4 13 0.00044 26.6 2.3 35 53-88 83-126 (142)
170 2fwr_A DNA repair protein RAD2 42.8 51 0.0017 28.6 6.6 58 25-89 111-169 (472)
171 1qtn_A Caspase-8; apoptosis, d 42.7 73 0.0025 24.3 6.7 39 63-103 54-92 (164)
172 1okg_A Possible 3-mercaptopyru 42.6 36 0.0012 29.4 5.4 38 51-89 93-132 (373)
173 4gl2_A Interferon-induced heli 42.5 8.5 0.00029 35.5 1.4 79 53-158 56-145 (699)
174 3hzh_A Chemotaxis response reg 42.3 89 0.003 22.1 9.8 73 22-102 35-107 (157)
175 3olh_A MST, 3-mercaptopyruvate 42.2 19 0.00064 30.0 3.4 51 37-89 240-290 (302)
176 3sqw_A ATP-dependent RNA helic 41.7 1.6E+02 0.0054 26.4 9.9 107 24-156 62-182 (579)
177 1rhs_A Sulfur-substituted rhod 41.6 30 0.001 28.4 4.6 38 51-88 90-130 (296)
178 3i5x_A ATP-dependent RNA helic 40.4 1.6E+02 0.0053 26.0 9.6 78 53-156 146-233 (563)
179 3zyw_A Glutaredoxin-3; metal b 39.4 79 0.0027 22.0 6.0 43 53-96 15-63 (111)
180 2oca_A DAR protein, ATP-depend 38.7 84 0.0029 27.4 7.4 100 26-160 132-236 (510)
181 3ntd_A FAD-dependent pyridine 38.7 24 0.00082 31.6 3.8 38 51-89 522-559 (565)
182 2vzf_A NADH-dependent FMN redu 38.7 1.1E+02 0.0036 23.3 7.2 27 128-171 71-97 (197)
183 1t3k_A Arath CDC25, dual-speci 38.6 42 0.0014 24.8 4.6 38 52-89 84-130 (152)
184 3ipz_A Monothiol glutaredoxin- 38.5 86 0.0029 21.5 6.1 43 53-96 17-65 (109)
185 2j6p_A SB(V)-AS(V) reductase; 38.3 51 0.0017 24.2 5.1 36 54-89 68-111 (152)
186 3olh_A MST, 3-mercaptopyruvate 38.3 35 0.0012 28.3 4.6 50 37-88 93-145 (302)
187 1m72_A Caspase-1; caspase, cys 37.4 1.2E+02 0.0041 24.9 7.7 49 53-103 32-93 (272)
188 3hzu_A Thiosulfate sulfurtrans 37.3 33 0.0011 28.7 4.3 38 51-88 257-295 (318)
189 3od5_A Caspase-6; caspase doma 36.1 76 0.0026 26.2 6.3 49 53-103 21-83 (278)
190 2j32_A Caspase-3; Pro-caspase3 35.9 63 0.0022 26.2 5.7 48 54-103 17-78 (250)
191 2d7d_A Uvrabc system protein B 35.7 2.1E+02 0.0072 26.4 9.9 73 24-103 35-133 (661)
192 1yt8_A Thiosulfate sulfurtrans 35.3 43 0.0015 30.3 4.9 37 52-88 62-98 (539)
193 3eul_A Possible nitrate/nitrit 35.0 1.1E+02 0.0039 21.2 8.8 72 23-103 15-86 (152)
194 3hjh_A Transcription-repair-co 34.9 38 0.0013 30.5 4.4 75 36-156 371-445 (483)
195 3ics_A Coenzyme A-disulfide re 34.6 31 0.0011 31.2 3.9 38 51-89 539-576 (588)
196 2fp3_A Caspase NC; apoptosis, 34.2 1E+02 0.0035 26.0 6.9 50 52-103 60-121 (316)
197 2wlr_A Putative thiosulfate su 34.0 52 0.0018 28.6 5.1 38 51-88 356-393 (423)
198 2yan_A Glutaredoxin-3; oxidore 33.9 1.1E+02 0.0037 20.6 5.9 46 54-100 17-68 (105)
199 3p45_A Caspase-6; protease, hu 33.7 1.1E+02 0.0038 23.8 6.5 50 52-103 43-106 (179)
200 1pyo_A Caspase-2; apoptosis, c 33.6 95 0.0033 23.7 6.0 50 51-102 31-94 (167)
201 1yt8_A Thiosulfate sulfurtrans 33.3 37 0.0013 30.7 4.2 36 52-88 321-357 (539)
202 3o26_A Salutaridine reductase; 33.0 1.8E+02 0.0062 23.0 8.4 50 53-102 36-87 (311)
203 4ehd_A Caspase-3; caspase, apo 32.7 81 0.0028 26.1 5.9 49 53-103 44-106 (277)
204 2q5c_A NTRC family transcripti 31.2 1.3E+02 0.0044 23.3 6.6 120 54-206 5-124 (196)
205 3utn_X Thiosulfate sulfurtrans 31.1 92 0.0031 26.4 6.1 40 50-89 272-311 (327)
206 1okg_A Possible 3-mercaptopyru 30.8 34 0.0012 29.5 3.3 38 53-90 246-283 (373)
207 3tp9_A Beta-lactamase and rhod 29.9 40 0.0014 29.7 3.7 39 51-89 425-463 (474)
208 2ql9_A Caspase-7; cysteine pro 29.4 1.9E+02 0.0066 22.2 7.2 49 53-103 44-106 (173)
209 2nn3_C Caspase-1; cysteine pro 29.3 1.3E+02 0.0043 25.4 6.6 50 52-103 59-121 (310)
210 2fz4_A DNA repair protein RAD2 29.1 1.6E+02 0.0055 23.0 7.0 57 25-88 111-168 (237)
211 2qv0_A Protein MRKE; structura 28.7 1.3E+02 0.0044 20.5 5.8 69 26-103 12-80 (143)
212 2zj8_A DNA helicase, putative 28.5 78 0.0027 29.4 5.6 66 23-92 40-109 (720)
213 2p6r_A Afuhel308 helicase; pro 28.2 74 0.0025 29.4 5.4 100 25-159 43-148 (702)
214 2wem_A Glutaredoxin-related pr 28.1 1.6E+02 0.0054 20.8 7.5 50 37-95 11-67 (118)
215 1nw9_B Caspase 9, apoptosis-re 27.7 1.1E+02 0.0038 25.1 5.9 50 52-103 20-83 (277)
216 1u6t_A SH3 domain-binding glut 26.6 70 0.0024 23.2 3.9 41 59-100 12-52 (121)
217 3ff4_A Uncharacterized protein 26.4 50 0.0017 23.8 3.1 54 146-202 55-108 (122)
218 3s5u_A Putative uncharacterize 26.0 1.9E+02 0.0065 23.1 6.8 47 35-87 148-199 (220)
219 1wik_A Thioredoxin-like protei 25.7 1.6E+02 0.0054 19.9 6.7 45 54-99 15-65 (109)
220 3qhq_A CSN2, SAG0897 family cr 24.9 1.8E+02 0.0062 23.4 6.5 47 35-87 148-199 (229)
221 4g81_D Putative hexonate dehyd 24.8 2.7E+02 0.0093 22.4 9.5 63 52-136 32-95 (255)
222 1rif_A DAR protein, DNA helica 24.4 93 0.0032 24.9 4.8 35 54-88 158-195 (282)
223 3gx8_A Monothiol glutaredoxin- 23.6 1.9E+02 0.0066 20.2 6.9 42 54-96 16-66 (121)
224 1f1j_A Caspase-7 protease; cas 23.6 2.3E+02 0.0078 23.7 7.1 49 53-103 69-131 (305)
225 3grc_A Sensor protein, kinase; 23.2 1.8E+02 0.0061 19.7 9.3 110 25-171 8-123 (140)
226 1c25_A CDC25A; hydrolase, cell 23.1 51 0.0017 24.2 2.7 38 52-89 86-136 (161)
227 3fmp_B ATP-dependent RNA helic 23.0 3.6E+02 0.012 23.1 10.3 104 23-157 132-243 (479)
228 2wci_A Glutaredoxin-4; redox-a 22.2 2.3E+02 0.0077 20.5 8.6 44 54-98 35-84 (135)
229 4a4z_A Antiviral helicase SKI2 21.4 2.8E+02 0.0096 27.1 8.2 38 52-89 81-119 (997)
230 3r0j_A Possible two component 21.3 2.8E+02 0.0096 21.2 9.4 112 25-171 25-137 (250)
231 3mwy_W Chromo domain-containin 21.0 2.4E+02 0.0083 26.5 7.5 39 51-90 284-323 (800)
232 3r1i_A Short-chain type dehydr 20.4 3.2E+02 0.011 21.6 8.2 49 52-101 55-104 (276)
No 1
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=100.00 E-value=2.3e-32 Score=216.96 Aligned_cols=161 Identities=29% Similarity=0.544 Sum_probs=146.6
Q ss_pred CCceEEEEEecCcchHHHHHHHHHHHhhcCCCCCCcEEEEeCchHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHH
Q 028124 20 SQPRHFYVAVDRLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEE 99 (213)
Q Consensus 20 ~~i~~~~~~~~~~~~K~~~L~~ll~~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~lhg~~~~~~R~~~l~~ 99 (213)
.+|+|+|+.++..+.|++.|.++++. .+..++||||+++..++.++..|...+ +.+..+||+|++.+|.+++++
T Consensus 2 ~~i~~~~~~~~~~~~K~~~l~~ll~~-----~~~~~~lVF~~~~~~~~~l~~~L~~~~-~~~~~~~~~~~~~~r~~~~~~ 75 (165)
T 1fuk_A 2 EGIKQFYVNVEEEEYKYECLTDLYDS-----ISVTQAVIFCNTRRKVEELTTKLRNDK-FTVSAIYSDLPQQERDTIMKE 75 (165)
T ss_dssp --CEEEEEEEESGGGHHHHHHHHHHH-----TTCSCEEEEESSHHHHHHHHHHHHHTT-CCEEEECTTSCHHHHHHHHHH
T ss_pred CCcEEEEEECCcchhHHHHHHHHHHh-----CCCCCEEEEECCHHHHHHHHHHHHHcC-CCEEEEECCCCHHHHHHHHHH
Confidence 47999999999877799999999988 356899999999999999999999887 799999999999999999999
Q ss_pred HhcccccccccccccCCCCCcCCCCCCceeEEEEeCCCCCcCcCCCCCCCCCEEEEecCCCChHHHHHhhccc--cCCCC
Q 028124 100 FRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTC--LAADG 177 (213)
Q Consensus 100 Fr~g~~~~~~~~~~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~rGld~~~v~~VI~yd~P~~~~~yi~R~GR~--~~~~g 177 (213)
|++|. .++||||++ +++|+|+|++++||+||+|++..+|+||+||+ .|+.|
T Consensus 76 f~~g~-----------------------~~vlv~T~~----~~~G~d~~~~~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g 128 (165)
T 1fuk_A 76 FRSGS-----------------------SRILISTDL----LARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKG 128 (165)
T ss_dssp HHTTS-----------------------CSEEEEEGG----GTTTCCCCSCSEEEESSCCSSGGGGGGSSCSCC-----C
T ss_pred HHcCC-----------------------CEEEEEcCh----hhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCc
Confidence 99985 899999999 99999999999999999999999999999997 45789
Q ss_pred eEEEEEeCchhHHHHHHHHHhcccccccCccccccC
Q 028124 178 SVINIVVGGEVVTLRSMEESLGLIVAEVPINISEIL 213 (213)
Q Consensus 178 ~~i~~~~~~e~~~~~~le~~l~~~~~~~~~~~~~~~ 213 (213)
.|++|+++.+...+..+++.++..++++|.++.+++
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (165)
T 1fuk_A 129 VAINFVTNEDVGAMRELEKFYSTQIEELPSDIATLL 164 (165)
T ss_dssp EEEEEEETTTHHHHHHHHHHSSCCCEECCSCCTTTT
T ss_pred eEEEEEcchHHHHHHHHHHHHccCccccCccHHhhc
Confidence 999999999999999999999999999999887764
No 2
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=100.00 E-value=4.5e-32 Score=215.07 Aligned_cols=157 Identities=21% Similarity=0.385 Sum_probs=144.2
Q ss_pred CCCCCCceEEEEEecCcchHHHHHHHHHHHhhcCCCCCCcEEEEeCchHHHHHHHHHHhccCCceEEEecCCCCHHHHHH
Q 028124 16 PSHFSQPRHFYVAVDRLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTL 95 (213)
Q Consensus 16 ~~~~~~i~~~~~~~~~~~~K~~~L~~ll~~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~lhg~~~~~~R~~ 95 (213)
...+.+|+|+|+.++..+ |+..|.++++. ....++||||+++..++.+++.|...+ +.+..+||+|++.+|..
T Consensus 4 ~~~~~~i~~~~~~~~~~~-K~~~L~~ll~~-----~~~~~~lVF~~~~~~~~~l~~~L~~~~-~~~~~~hg~~~~~~r~~ 76 (163)
T 2hjv_A 4 GLTTRNIEHAVIQVREEN-KFSLLKDVLMT-----ENPDSCIIFCRTKEHVNQLTDELDDLG-YPCDKIHGGMIQEDRFD 76 (163)
T ss_dssp --CCCCEEEEEEECCGGG-HHHHHHHHHHH-----HCCSSEEEECSSHHHHHHHHHHHHHTT-CCEEEECTTSCHHHHHH
T ss_pred ccCcccceEEEEECChHH-HHHHHHHHHHh-----cCCCcEEEEECCHHHHHHHHHHHHHcC-CcEEEEeCCCCHHHHHH
Confidence 345667999999998876 99999999987 356799999999999999999999987 89999999999999999
Q ss_pred HHHHHhcccccccccccccCCCCCcCCCCCCceeEEEEeCCCCCcCcCCCCCCCCCEEEEecCCCChHHHHHhhccc--c
Q 028124 96 ILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTC--L 173 (213)
Q Consensus 96 ~l~~Fr~g~~~~~~~~~~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~rGld~~~v~~VI~yd~P~~~~~yi~R~GR~--~ 173 (213)
++++|++|. .++||||++ +++|+|+|++++|||||+|+++.+|+||+||+ .
T Consensus 77 ~~~~f~~g~-----------------------~~vlv~T~~----~~~Gld~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~ 129 (163)
T 2hjv_A 77 VMNEFKRGE-----------------------YRYLVATDV----AARGIDIENISLVINYDLPLEKESYVHRTGRTGRA 129 (163)
T ss_dssp HHHHHHTTS-----------------------CSEEEECGG----GTTTCCCSCCSEEEESSCCSSHHHHHHHTTTSSCT
T ss_pred HHHHHHcCC-----------------------CeEEEECCh----hhcCCchhcCCEEEEeCCCCCHHHHHHhccccCcC
Confidence 999999985 999999999 99999999999999999999999999999996 5
Q ss_pred CCCCeEEEEEeCchhHHHHHHHHHhcccccccC
Q 028124 174 AADGSVINIVVGGEVVTLRSMEESLGLIVAEVP 206 (213)
Q Consensus 174 ~~~g~~i~~~~~~e~~~~~~le~~l~~~~~~~~ 206 (213)
|+.|.+++|+.+.+...++++++.++.++++++
T Consensus 130 g~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 162 (163)
T 2hjv_A 130 GNKGKAISFVTAFEKRFLADIEEYIGFEIQKIE 162 (163)
T ss_dssp TCCEEEEEEECGGGHHHHHHHHHHHTSCCEECC
T ss_pred CCCceEEEEecHHHHHHHHHHHHHHCCCcCccC
Confidence 678999999999999999999999999988765
No 3
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=100.00 E-value=3.7e-32 Score=217.92 Aligned_cols=159 Identities=18% Similarity=0.360 Sum_probs=142.4
Q ss_pred CCCCceEEEEEecCcchHHHHHHHHHHHhhcCCCCCCcEEEEeCchHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHH
Q 028124 18 HFSQPRHFYVAVDRLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLIL 97 (213)
Q Consensus 18 ~~~~i~~~~~~~~~~~~K~~~L~~ll~~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~lhg~~~~~~R~~~l 97 (213)
++.+|+|+|+.++..+ |+..|.++++. .+..++||||+++++++.+++.|...+ +.+..+||+|++.+|..++
T Consensus 2 ~~~~i~q~~~~~~~~~-K~~~L~~ll~~-----~~~~~~lVF~~~~~~~~~l~~~L~~~~-~~~~~~hg~~~~~~r~~~~ 74 (172)
T 1t5i_A 2 SLHGLQQYYVKLKDNE-KNRKLFDLLDV-----LEFNQVVIFVKSVQRCIALAQLLVEQN-FPAIAIHRGMPQEERLSRY 74 (172)
T ss_dssp ---CCEEEEEECCGGG-HHHHHHHHHHH-----SCCSSEEEECSSHHHHHHHHHHHHHTT-CCEEEECTTSCHHHHHHHH
T ss_pred ccCCeEEEEEECChHH-HHHHHHHHHHh-----CCCCcEEEEECCHHHHHHHHHHHHhcC-CCEEEEECCCCHHHHHHHH
Confidence 4578999999999876 99999999987 356799999999999999999999987 8999999999999999999
Q ss_pred HHHhcccccccccccccCCCCCcCCCCCCceeEEEEeCCCCCcCcCCCCCCCCCEEEEecCCCChHHHHHhhccc--cCC
Q 028124 98 EEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTC--LAA 175 (213)
Q Consensus 98 ~~Fr~g~~~~~~~~~~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~rGld~~~v~~VI~yd~P~~~~~yi~R~GR~--~~~ 175 (213)
++|++|. .++||||++ +++|+|+|++++|||||+|+++..|+||+||+ .|+
T Consensus 75 ~~f~~g~-----------------------~~vLvaT~~----~~~Gldi~~~~~Vi~~d~p~~~~~~~qr~GR~~R~g~ 127 (172)
T 1t5i_A 75 QQFKDFQ-----------------------RRILVATNL----FGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGT 127 (172)
T ss_dssp HHHHTTS-----------------------CSEEEESSC----CSTTCCGGGCSEEEESSCCSSHHHHHHHHHHHTGGGC
T ss_pred HHHHCCC-----------------------CcEEEECCc----hhcCcchhhCCEEEEECCCCCHHHHHHHhcccccCCC
Confidence 9999985 999999999 99999999999999999999999999999996 567
Q ss_pred CCeEEEEEeCc-hhHHHHHHHHHhcccccccCcccc
Q 028124 176 DGSVINIVVGG-EVVTLRSMEESLGLIVAEVPINIS 210 (213)
Q Consensus 176 ~g~~i~~~~~~-e~~~~~~le~~l~~~~~~~~~~~~ 210 (213)
.|.+++|+.+. +...++.+++.++.+++++|..++
T Consensus 128 ~g~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 163 (172)
T 1t5i_A 128 KGLAITFVSDENDAKILNDVQDRFEVNISELPDEID 163 (172)
T ss_dssp CCEEEEEECSHHHHHHHHHHHHHHCCCEEECC----
T ss_pred CcEEEEEEcChhHHHHHHHHHHHHhcchhhCChhhc
Confidence 89999999875 678899999999999999986654
No 4
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=100.00 E-value=5.6e-32 Score=216.65 Aligned_cols=161 Identities=17% Similarity=0.338 Sum_probs=147.5
Q ss_pred CCCCceEEEEEecCcchHHHHHHHHHHHhhcCCCCCCcEEEEeCchHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHH
Q 028124 18 HFSQPRHFYVAVDRLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLIL 97 (213)
Q Consensus 18 ~~~~i~~~~~~~~~~~~K~~~L~~ll~~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~lhg~~~~~~R~~~l 97 (213)
++.+|+|+|+.++..+.|++.|.++++. .+.+++||||+++.+++.++..|...+ +.+..+||+|++.+|..++
T Consensus 4 ~~~~i~q~~~~~~~~~~K~~~L~~ll~~-----~~~~~~lVF~~~~~~~~~l~~~L~~~~-~~~~~~~g~~~~~~R~~~~ 77 (175)
T 2rb4_A 4 TLNNIRQYYVLCEHRKDKYQALCNIYGS-----ITIGQAIIFCQTRRNAKWLTVEMIQDG-HQVSLLSGELTVEQRASII 77 (175)
T ss_dssp CBCCEEEEEEECSSHHHHHHHHHHHHTT-----SCCSEEEEECSCHHHHHHHHHHHHTTT-CCEEEECSSCCHHHHHHHH
T ss_pred ccCCceEEEEEcCChHhHHHHHHHHHHh-----CCCCCEEEEECCHHHHHHHHHHHHHcC-CcEEEEeCCCCHHHHHHHH
Confidence 4678999999999877799999999987 356799999999999999999999987 8999999999999999999
Q ss_pred HHHhcccccccccccccCCCCCcCCCCCCceeEEEEeCCCCCcCcCCCCCCCCCEEEEecCC------CChHHHHHhhcc
Q 028124 98 EEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELP------TKKETYIRRMTT 171 (213)
Q Consensus 98 ~~Fr~g~~~~~~~~~~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~rGld~~~v~~VI~yd~P------~~~~~yi~R~GR 171 (213)
++|++|. .++||||++ +++|+|+|++++|||||+| .+..+|+||+||
T Consensus 78 ~~f~~g~-----------------------~~vLvaT~~----~~~Gid~~~~~~Vi~~d~p~~~~~~~~~~~~~qr~GR 130 (175)
T 2rb4_A 78 QRFRDGK-----------------------EKVLITTNV----CARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGR 130 (175)
T ss_dssp HHHHTTS-----------------------CSEEEECCS----CCTTTCCTTEEEEEESSCCC--CCSCCHHHHHHHHCB
T ss_pred HHHHcCC-----------------------CeEEEEecc----hhcCCCcccCCEEEEeCCCCCccccCCHHHHHHHhcc
Confidence 9999985 999999999 9999999999999999999 899999999999
Q ss_pred c--cCCCCeEEEEEeCchhHHHHHHHHHhcccccccCccccc
Q 028124 172 C--LAADGSVINIVVGGEVVTLRSMEESLGLIVAEVPINISE 211 (213)
Q Consensus 172 ~--~~~~g~~i~~~~~~e~~~~~~le~~l~~~~~~~~~~~~~ 211 (213)
+ .|+.|.+++|+.+.+...+.++++.++..+++++++-.+
T Consensus 131 ~gR~g~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 172 (175)
T 2rb4_A 131 TGRFGKKGLAFNMIEVDELPSLMKIQDHFNSSIKQLNAEDMD 172 (175)
T ss_dssp C----CCEEEEEEECGGGHHHHHHHHHHHTCCCEEECSSCCC
T ss_pred cccCCCCceEEEEEccchHHHHHHHHHHhcCcccccCCchhc
Confidence 7 467899999999999999999999999999988876543
No 5
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.97 E-value=2.5e-31 Score=215.70 Aligned_cols=164 Identities=20% Similarity=0.268 Sum_probs=133.7
Q ss_pred CCCCCCCceEEEEEecCcchHHHHHHHHHHHhhcCCCCCCcEEEEeCchHHHHHHHHHHhccCCceEEEecCCCCHHHHH
Q 028124 15 SPSHFSQPRHFYVAVDRLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERT 94 (213)
Q Consensus 15 ~~~~~~~i~~~~~~~~~~~~K~~~L~~ll~~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~lhg~~~~~~R~ 94 (213)
...++.+|+|+|+.++..+ |+..|.++|+. ..++.++||||+++..++.++..|...+ +.+..+||+|++.+|.
T Consensus 13 ~~~~~~~i~q~~~~v~~~~-K~~~L~~ll~~----~~~~~k~lVF~~~~~~~~~l~~~L~~~g-~~~~~lhg~~~~~~r~ 86 (185)
T 2jgn_A 13 QGSTSENITQKVVWVEESD-KRSFLLDLLNA----TGKDSLTLVFVETKKGADSLEDFLYHEG-YACTSIHGDRSQRDRE 86 (185)
T ss_dssp ---CCTTEEEEEEECCGGG-HHHHHHHHHHH----C-CCSCEEEEESCHHHHHHHHHHHHHTT-CCEEEEC--------C
T ss_pred cCCCCCCceEEEEEeCcHH-HHHHHHHHHHh----cCCCCeEEEEECCHHHHHHHHHHHHHcC-CceEEEeCCCCHHHHH
Confidence 3456789999999999876 99999999988 2357899999999999999999999887 8999999999999999
Q ss_pred HHHHHHhcccccccccccccCCCCCcCCCCCCceeEEEEeCCCCCcCcCCCCCCCCCEEEEecCCCChHHHHHhhccc--
Q 028124 95 LILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTC-- 172 (213)
Q Consensus 95 ~~l~~Fr~g~~~~~~~~~~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~rGld~~~v~~VI~yd~P~~~~~yi~R~GR~-- 172 (213)
.++++|++|. .++||||++ +++|+|+|++++||+||+|+++.+|+||+||+
T Consensus 87 ~~~~~f~~g~-----------------------~~vLvaT~~----~~~Gldi~~~~~VI~~d~p~s~~~~~Qr~GR~~R 139 (185)
T 2jgn_A 87 EALHQFRSGK-----------------------SPILVATAV----AARGLDISNVKHVINFDLPSDIEEYVHRIGRTGR 139 (185)
T ss_dssp HHHHHHHHTS-----------------------SSEEEEEC----------CCCSBSEEEESSCCSSHHHHHHHHTTBCC
T ss_pred HHHHHHHcCC-----------------------CeEEEEcCh----hhcCCCcccCCEEEEeCCCCCHHHHHHHccccCC
Confidence 9999999985 899999999 99999999999999999999999999999997
Q ss_pred cCCCCeEEEEEeCchhHHHHHHHHHhcccccccCccccc
Q 028124 173 LAADGSVINIVVGGEVVTLRSMEESLGLIVAEVPINISE 211 (213)
Q Consensus 173 ~~~~g~~i~~~~~~e~~~~~~le~~l~~~~~~~~~~~~~ 211 (213)
.|+.|.|++|+++.+...++++++.++....++|..+.+
T Consensus 140 ~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~ 178 (185)
T 2jgn_A 140 VGNLGLATSFFNERNINITKDLLDLLVEAKQEVPSWLEN 178 (185)
T ss_dssp TTSCEEEEEEECGGGGGGHHHHHHHHHHTTCCCCHHHHH
T ss_pred CCCCcEEEEEEchhhHHHHHHHHHHHHhccCCCCHHHHH
Confidence 466899999999999999999999998888888765543
No 6
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.97 E-value=1.6e-30 Score=212.26 Aligned_cols=160 Identities=21% Similarity=0.278 Sum_probs=140.9
Q ss_pred CCCCCceEEEEEecCcchHHHHHHHHHHHhhcCCCCCCcEEEEeCchHHHHHHHHHHhccCCceEEEecCCCCHHHHHHH
Q 028124 17 SHFSQPRHFYVAVDRLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLI 96 (213)
Q Consensus 17 ~~~~~i~~~~~~~~~~~~K~~~L~~ll~~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~lhg~~~~~~R~~~ 96 (213)
.+..+|+|+|+.++..+ |+..|.++|.. ...++||||+++..++.+++.|...+ +.+..+||+|++.+|.++
T Consensus 25 ~~~~~i~q~~~~~~~~~-K~~~L~~~l~~------~~~~~lVF~~~~~~~~~l~~~L~~~g-~~~~~lhg~~~~~~R~~~ 96 (191)
T 2p6n_A 25 AASLDVIQEVEYVKEEA-KMVYLLECLQK------TPPPVLIFAEKKADVDAIHEYLLLKG-VEAVAIHGGKDQEERTKA 96 (191)
T ss_dssp ---CCSEEEEEECCGGG-HHHHHHHHHTT------SCSCEEEECSCHHHHHHHHHHHHHHT-CCEEEECTTSCHHHHHHH
T ss_pred CCCcCceEEEEEcChHH-HHHHHHHHHHh------CCCCEEEEECCHHHHHHHHHHHHHcC-CcEEEEeCCCCHHHHHHH
Confidence 45678999999998876 99999999876 24689999999999999999999887 899999999999999999
Q ss_pred HHHHhcccccccccccccCCCCCcCCCCCCceeEEEEeCCCCCcCcCCCCCCCCCEEEEecCCCChHHHHHhhccc--cC
Q 028124 97 LEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTC--LA 174 (213)
Q Consensus 97 l~~Fr~g~~~~~~~~~~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~rGld~~~v~~VI~yd~P~~~~~yi~R~GR~--~~ 174 (213)
+++|++|+ .++||||++ +++|+|+|++++|||||+|+++++|+||+||+ .|
T Consensus 97 l~~F~~g~-----------------------~~vLvaT~~----~~~Gldi~~v~~VI~~d~p~~~~~~~qr~GR~gR~g 149 (191)
T 2p6n_A 97 IEAFREGK-----------------------KDVLVATDV----ASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGCSG 149 (191)
T ss_dssp HHHHHHTS-----------------------CSEEEECHH----HHTTCCCCCCSEEEESSCCSSHHHHHHHHTTSCC--
T ss_pred HHHHhcCC-----------------------CEEEEEcCc----hhcCCCcccCCEEEEeCCCCCHHHHHHHhCccccCC
Confidence 99999985 999999999 99999999999999999999999999999997 46
Q ss_pred CCCeEEEEEeCc-hhHHHHHHHHHhcccccccCccccc
Q 028124 175 ADGSVINIVVGG-EVVTLRSMEESLGLIVAEVPINISE 211 (213)
Q Consensus 175 ~~g~~i~~~~~~-e~~~~~~le~~l~~~~~~~~~~~~~ 211 (213)
+.|.+++|+++. +...+..+++.++....++|..+.+
T Consensus 150 ~~g~~i~l~~~~~~~~~~~~l~~~l~~~~~~~p~~l~~ 187 (191)
T 2p6n_A 150 NTGIATTFINKACDESVLMDLKALLLEAKQKVPPVLQV 187 (191)
T ss_dssp -CCEEEEEECTTSCHHHHHHHHHHHHHTTCCCCHHHHS
T ss_pred CCcEEEEEEcCchhHHHHHHHHHHHHHccCcCCHHHHh
Confidence 789999999876 7788899999998888888765554
No 7
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.97 E-value=1.1e-29 Score=209.94 Aligned_cols=155 Identities=21% Similarity=0.303 Sum_probs=141.4
Q ss_pred CCceEEEEEecCcchHHHHHHHHHHHhhcCCCCCCcEEEEeCchHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHH
Q 028124 20 SQPRHFYVAVDRLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEE 99 (213)
Q Consensus 20 ~~i~~~~~~~~~~~~K~~~L~~ll~~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~lhg~~~~~~R~~~l~~ 99 (213)
-.+.+.++.++... |++.|.++++. .+++++||||+++.+++.+++.|...+ +.+..+||+|++.+|..++++
T Consensus 4 i~~~~~~~~~~~~~-k~~~l~~ll~~-----~~~~~~lVF~~~~~~~~~l~~~L~~~~-~~~~~lhg~~~~~~r~~~~~~ 76 (212)
T 3eaq_A 4 VTYEEEAVPAPVRG-RLEVLSDLLYV-----ASPDRAMVFTRTKAETEEIAQGLLRLG-HPAQALHGDLSQGERERVLGA 76 (212)
T ss_dssp CCBCCEEEECCTTS-HHHHHHHHHHH-----HCCSCEEEECSSHHHHHHHHHHHHHHT-CCEEEECSSSCHHHHHHHHHH
T ss_pred cceeeeEEeCCHHH-HHHHHHHHHHh-----CCCCeEEEEeCCHHHHHHHHHHHHHcC-CCEEEEECCCCHHHHHHHHHH
Confidence 34678888888877 99999999987 356899999999999999999999887 899999999999999999999
Q ss_pred HhcccccccccccccCCCCCcCCCCCCceeEEEEeCCCCCcCcCCCCCCCCCEEEEecCCCChHHHHHhhcccc--CCCC
Q 028124 100 FRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCL--AADG 177 (213)
Q Consensus 100 Fr~g~~~~~~~~~~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~rGld~~~v~~VI~yd~P~~~~~yi~R~GR~~--~~~g 177 (213)
|++|. .++||||++ +++|+|+|++++|||||+|++.+.|+||+||+| |+.|
T Consensus 77 f~~g~-----------------------~~vlvaT~~----~~~Gidi~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g 129 (212)
T 3eaq_A 77 FRQGE-----------------------VRVLVATDV----AARGLDIPQVDLVVHYRLPDRAEAYQHRSGRTGRAGRGG 129 (212)
T ss_dssp HHSSS-----------------------CCEEEECTT----TTCSSSCCCBSEEEESSCCSSHHHHHHHHTTBCCCC--B
T ss_pred HHCCC-----------------------CeEEEecCh----hhcCCCCccCcEEEECCCCcCHHHHHHHhcccCCCCCCC
Confidence 99985 999999999 999999999999999999999999999999974 5679
Q ss_pred eEEEEEeCchhHHHHHHHHHhcccccccCcc
Q 028124 178 SVINIVVGGEVVTLRSMEESLGLIVAEVPIN 208 (213)
Q Consensus 178 ~~i~~~~~~e~~~~~~le~~l~~~~~~~~~~ 208 (213)
.|+.|+++.+...++.+++.++..+.+++.+
T Consensus 130 ~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~ 160 (212)
T 3eaq_A 130 RVVLLYGPRERRDVEALERAVGRRFKRVNPP 160 (212)
T ss_dssp EEEEEECGGGHHHHHHHHHHHSSCCEECCCC
T ss_pred eEEEEEchhHHHHHHHHHHHhcCcCeecCCC
Confidence 9999999999999999999999988877754
No 8
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.96 E-value=5.1e-29 Score=216.94 Aligned_cols=154 Identities=19% Similarity=0.300 Sum_probs=141.6
Q ss_pred CceEEEEEecCcchHHHHHHHHHHHhhcCCCCCCcEEEEeCchHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHH
Q 028124 21 QPRHFYVAVDRLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEF 100 (213)
Q Consensus 21 ~i~~~~~~~~~~~~K~~~L~~ll~~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~lhg~~~~~~R~~~l~~F 100 (213)
+++|+|+.++..+ |++.|.++++. ..++++||||+++.+++.++..|...+ +.+..+||+|++.+|..++++|
T Consensus 2 ~v~~~~i~~~~~~-K~~~L~~ll~~-----~~~~~~LVF~~t~~~~~~l~~~L~~~g-~~~~~lhg~l~~~~r~~~~~~f 74 (300)
T 3i32_A 2 TYEEEAVPAPVRG-RLEVLSDLLYV-----ASPDRAMVFTRTKAETEEIAQGLLRLG-HPAQALHGDMSQGERERVMGAF 74 (300)
T ss_dssp CSEEEEEECCSSS-HHHHHHHHHHH-----HCCSSEEEECSSHHHHHHHHHHHHTTT-CCEEEECSCCCTHHHHHHHHHH
T ss_pred ceEEEEEECCHHH-HHHHHHHHHHh-----cCCCCEEEEECCHHHHHHHHHHHHhCC-CCEEEEeCCCCHHHHHHHHHHh
Confidence 4789999999987 99999999987 247899999999999999999999887 8999999999999999999999
Q ss_pred hcccccccccccccCCCCCcCCCCCCceeEEEEeCCCCCcCcCCCCCCCCCEEEEecCCCChHHHHHhhcccc--CCCCe
Q 028124 101 RHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCL--AADGS 178 (213)
Q Consensus 101 r~g~~~~~~~~~~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~rGld~~~v~~VI~yd~P~~~~~yi~R~GR~~--~~~g~ 178 (213)
++|. .++||||++ +++|+|+|++++|||||+|++.++|+||+||+| |+.|.
T Consensus 75 ~~g~-----------------------~~vLVaT~v----a~~Gidi~~v~~VI~~d~p~s~~~y~Qr~GRagR~g~~G~ 127 (300)
T 3i32_A 75 RQGE-----------------------VRVLVATDV----AARGLDIPQVDLVVHYRMPDRAEAYQHRSGRTGRAGRGGR 127 (300)
T ss_dssp HHTS-----------------------CCEEEECST----TTCSTTCCCCSEEEESSCCSSTTHHHHHHTCCC-----CE
T ss_pred hcCC-----------------------ceEEEEech----hhcCccccceeEEEEcCCCCCHHHHHHHccCcCcCCCCce
Confidence 9985 999999999 999999999999999999999999999999974 56799
Q ss_pred EEEEEeCchhHHHHHHHHHhcccccccCcc
Q 028124 179 VINIVVGGEVVTLRSMEESLGLIVAEVPIN 208 (213)
Q Consensus 179 ~i~~~~~~e~~~~~~le~~l~~~~~~~~~~ 208 (213)
|+.|+++.+...++.+++.++..+.+++.+
T Consensus 128 ~i~l~~~~e~~~~~~ie~~~~~~~~~~~~~ 157 (300)
T 3i32_A 128 VVLLYGPRERRDVEALERAVGRRFKRVNPP 157 (300)
T ss_dssp EEEEECSSTHHHHHHHHHHHTCCCEECCCC
T ss_pred EEEEeChHHHHHHHHHHHHhCCcceEeCCC
Confidence 999999999999999999999988877654
No 9
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.93 E-value=3.8e-31 Score=211.10 Aligned_cols=157 Identities=18% Similarity=0.313 Sum_probs=143.1
Q ss_pred CCCceEEEEEecCcchHHHHHHHHHHHhhcCCCCCCcEEEEeCchHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHH
Q 028124 19 FSQPRHFYVAVDRLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILE 98 (213)
Q Consensus 19 ~~~i~~~~~~~~~~~~K~~~L~~ll~~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~lhg~~~~~~R~~~l~ 98 (213)
+.+|+|+|+.++..+.|+..|.++++. ..+.++||||+++..++.+++.|...+ +.+..+||+|++.+|..+++
T Consensus 1 R~~i~~~~~~~~~~~~k~~~l~~ll~~-----~~~~~~iVF~~~~~~~~~l~~~L~~~~-~~~~~~~g~~~~~~r~~~~~ 74 (170)
T 2yjt_D 1 RKKIHQWYYRADDLEHKTALLVHLLKQ-----PEATRSIVFVRKRERVHELANWLREAG-INNCYLEGEMVQGKRNEAIK 74 (170)
Confidence 357899999999844599999999976 356799999999999999999999887 89999999999999999999
Q ss_pred HHhcccccccccccccCCCCCcCCCCCCceeEEEEeCCCCCcCcCCCCCCCCCEEEEecCCCChHHHHHhhccc--cCCC
Q 028124 99 EFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTC--LAAD 176 (213)
Q Consensus 99 ~Fr~g~~~~~~~~~~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~rGld~~~v~~VI~yd~P~~~~~yi~R~GR~--~~~~ 176 (213)
+|++|. .++||||++ +++|+|+|++++||+||+|+++.+|+||+||+ .|+.
T Consensus 75 ~f~~g~-----------------------~~vLvaT~~----~~~Gid~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~ 127 (170)
T 2yjt_D 75 RLTEGR-----------------------VNVLVATDV----AARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRK 127 (170)
Confidence 999985 999999999 99999999999999999999999999999996 5678
Q ss_pred CeEEEEEeCchhHHHHHHHHHhcccccccCcc
Q 028124 177 GSVINIVVGGEVVTLRSMEESLGLIVAEVPIN 208 (213)
Q Consensus 177 g~~i~~~~~~e~~~~~~le~~l~~~~~~~~~~ 208 (213)
|.+++++.+.+...+.++++.++..+.+.+++
T Consensus 128 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (170)
T 2yjt_D 128 GTAISLVEAHDHLLLGKVGRYIEEPIKARVID 159 (170)
Confidence 99999999999999999999999888776543
No 10
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=99.95 E-value=1e-27 Score=212.59 Aligned_cols=164 Identities=27% Similarity=0.560 Sum_probs=152.0
Q ss_pred CCCCCceEEEEEecCcchHHHHHHHHHHHhhcCCCCCCcEEEEeCchHHHHHHHHHHhccCCceEEEecCCCCHHHHHHH
Q 028124 17 SHFSQPRHFYVAVDRLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLI 96 (213)
Q Consensus 17 ~~~~~i~~~~~~~~~~~~K~~~L~~ll~~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~lhg~~~~~~R~~~ 96 (213)
....++.+++..+...+.|...|.++++.. ...++||||++++.++.+++.|...+ +.+..+||++++.+|..+
T Consensus 245 ~~~~~~~~~~~~~~~~~~k~~~l~~~~~~~-----~~~~~lVf~~~~~~~~~l~~~L~~~~-~~~~~~h~~~~~~~r~~~ 318 (410)
T 2j0s_A 245 LTLEGIKQFFVAVEREEWKFDTLCDLYDTL-----TITQAVIFCNTKRKVDWLTEKMREAN-FTVSSMHGDMPQKERESI 318 (410)
T ss_dssp CSCTTEEEEEEEESSTTHHHHHHHHHHHHH-----TSSEEEEECSSHHHHHHHHHHHHHTT-CCCEEECTTSCHHHHHHH
T ss_pred ccCCCceEEEEEeCcHHhHHHHHHHHHHhc-----CCCcEEEEEcCHHHHHHHHHHHHhCC-CceEEeeCCCCHHHHHHH
Confidence 345678999999998888999999999873 34699999999999999999999987 799999999999999999
Q ss_pred HHHHhcccccccccccccCCCCCcCCCCCCceeEEEEeCCCCCcCcCCCCCCCCCEEEEecCCCChHHHHHhhccc--cC
Q 028124 97 LEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTC--LA 174 (213)
Q Consensus 97 l~~Fr~g~~~~~~~~~~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~rGld~~~v~~VI~yd~P~~~~~yi~R~GR~--~~ 174 (213)
+++|++|. .++||||++ +++|+|+|++++||+||+|++...|+||+||+ .|
T Consensus 319 ~~~f~~g~-----------------------~~vlv~T~~----~~~Gidi~~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g 371 (410)
T 2j0s_A 319 MKEFRSGA-----------------------SRVLISTDV----WARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYG 371 (410)
T ss_dssp HHHHHHTS-----------------------SCEEEECGG----GSSSCCCTTEEEEEESSCCSSHHHHHHHHTTSSGGG
T ss_pred HHHHHCCC-----------------------CCEEEECCh----hhCcCCcccCCEEEEECCCCCHHHHHHhcccccCCC
Confidence 99999985 899999999 99999999999999999999999999999997 46
Q ss_pred CCCeEEEEEeCchhHHHHHHHHHhcccccccCccccccC
Q 028124 175 ADGSVINIVVGGEVVTLRSMEESLGLIVAEVPINISEIL 213 (213)
Q Consensus 175 ~~g~~i~~~~~~e~~~~~~le~~l~~~~~~~~~~~~~~~ 213 (213)
+.|.|+.|+.+.+...+++++++++.+++++|.+..+++
T Consensus 372 ~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 410 (410)
T 2j0s_A 372 RKGVAINFVKNDDIRILRDIEQYYSTQIDEMPMNVADLI 410 (410)
T ss_dssp CCEEEEEEEEGGGHHHHHHHHHHTTCCCEECCSCCTTTC
T ss_pred CceEEEEEecHHHHHHHHHHHHHhCCCceecccchhhcC
Confidence 789999999999999999999999999999999988765
No 11
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=99.95 E-value=4.2e-27 Score=212.77 Aligned_cols=159 Identities=19% Similarity=0.303 Sum_probs=142.6
Q ss_pred CCCCceEEEEEecCcchHHHHHHHHHHHhhcCCCCCCcEEEEeCchHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHH
Q 028124 18 HFSQPRHFYVAVDRLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLIL 97 (213)
Q Consensus 18 ~~~~i~~~~~~~~~~~~K~~~L~~ll~~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~lhg~~~~~~R~~~l 97 (213)
...++.|.+..+.... |...|.+++.. ...++||||++++.|+.+++.|...+ +.+..+||++++.+|.+++
T Consensus 272 ~~~~i~~~~~~~~~~~-k~~~l~~~l~~------~~~~~lVF~~t~~~a~~l~~~L~~~~-~~~~~lhg~~~~~~R~~~l 343 (434)
T 2db3_A 272 ACSDVKQTIYEVNKYA-KRSKLIEILSE------QADGTIVFVETKRGADFLASFLSEKE-FPTTSIHGDRLQSQREQAL 343 (434)
T ss_dssp CCTTEEEEEEECCGGG-HHHHHHHHHHH------CCTTEEEECSSHHHHHHHHHHHHHTT-CCEEEESTTSCHHHHHHHH
T ss_pred cccccceEEEEeCcHH-HHHHHHHHHHh------CCCCEEEEEeCcHHHHHHHHHHHhCC-CCEEEEeCCCCHHHHHHHH
Confidence 4567899998888776 99999999987 22459999999999999999999987 8999999999999999999
Q ss_pred HHHhcccccccccccccCCCCCcCCCCCCceeEEEEeCCCCCcCcCCCCCCCCCEEEEecCCCChHHHHHhhccc--cCC
Q 028124 98 EEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTC--LAA 175 (213)
Q Consensus 98 ~~Fr~g~~~~~~~~~~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~rGld~~~v~~VI~yd~P~~~~~yi~R~GR~--~~~ 175 (213)
++|++|. .++||||++ ++||+|+|++++|||||+|++.++|+||+||+ .|+
T Consensus 344 ~~F~~g~-----------------------~~vLvaT~v----~~rGlDi~~v~~VI~~d~p~~~~~y~qriGR~gR~g~ 396 (434)
T 2db3_A 344 RDFKNGS-----------------------MKVLIATSV----ASRGLDIKNIKHVINYDMPSKIDDYVHRIGRTGRVGN 396 (434)
T ss_dssp HHHHTSS-----------------------CSEEEECGG----GTSSCCCTTCCEEEESSCCSSHHHHHHHHTTSSCTTC
T ss_pred HHHHcCC-----------------------CcEEEEchh----hhCCCCcccCCEEEEECCCCCHHHHHHHhcccccCCC
Confidence 9999985 999999999 99999999999999999999999999999997 567
Q ss_pred CCeEEEEEeC-chhHHHHHHHHHhcccccccCccccc
Q 028124 176 DGSVINIVVG-GEVVTLRSMEESLGLIVAEVPINISE 211 (213)
Q Consensus 176 ~g~~i~~~~~-~e~~~~~~le~~l~~~~~~~~~~~~~ 211 (213)
.|.+++|+++ ++......+.+.+....+++|..+.+
T Consensus 397 ~G~a~~~~~~~~~~~~~~~l~~~l~~~~~~vp~~l~~ 433 (434)
T 2db3_A 397 NGRATSFFDPEKDRAIAADLVKILEGSGQTVPDFLRT 433 (434)
T ss_dssp CEEEEEEECTTTCGGGHHHHHHHHHHTTCCCCGGGC-
T ss_pred CCEEEEEEeccccHHHHHHHHHHHHHcCCCCCHHHHh
Confidence 8999999985 57788899999998888888877654
No 12
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=99.95 E-value=2.6e-27 Score=209.43 Aligned_cols=165 Identities=28% Similarity=0.539 Sum_probs=137.3
Q ss_pred CCCCCCceEEEEEecCcchHHHHHHHHHHHhhcCCCCCCcEEEEeCchHHHHHHHHHHhccCCceEEEecCCCCHHHHHH
Q 028124 16 PSHFSQPRHFYVAVDRLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTL 95 (213)
Q Consensus 16 ~~~~~~i~~~~~~~~~~~~K~~~L~~ll~~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~lhg~~~~~~R~~ 95 (213)
......+.+++..+...+.|+..+.++++. ....++||||++++.++.+++.|...+ +.+..+||+|++++|.+
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~~~lvf~~~~~~~~~l~~~l~~~~-~~~~~~h~~~~~~~r~~ 321 (414)
T 3eiq_A 248 ELTLEGIRQFYINVEREEWKLDTLCDLYET-----LTITQAVIFINTRRKVDWLTEKMHARD-FTVSAMHGDMDQKERDV 321 (414)
T ss_dssp CCCTTSCCEEEEECSSSTTHHHHHHHHHHS-----SCCSSCEEECSCHHHHHHHHHHHHTTT-CCCEEC---CHHHHHHH
T ss_pred ccCCCCceEEEEEeChHHhHHHHHHHHHHh-----CCCCcEEEEeCCHHHHHHHHHHHHhcC-CeEEEecCCCCHHHHHH
Confidence 345667899999998888899999999987 456799999999999999999999987 89999999999999999
Q ss_pred HHHHHhcccccccccccccCCCCCcCCCCCCceeEEEEeCCCCCcCcCCCCCCCCCEEEEecCCCChHHHHHhhccc--c
Q 028124 96 ILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTC--L 173 (213)
Q Consensus 96 ~l~~Fr~g~~~~~~~~~~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~rGld~~~v~~VI~yd~P~~~~~yi~R~GR~--~ 173 (213)
++++|++|. .++||||++ +++|+|+|++++||+||+|++...|+||+||+ .
T Consensus 322 ~~~~f~~g~-----------------------~~vlv~T~~----~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~ 374 (414)
T 3eiq_A 322 IMREFRSGS-----------------------SRVLITTDL----LARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRF 374 (414)
T ss_dssp HHHHHSCC--------------------------CEEECSS----CC--CCGGGCSCEEESSCCSSTHHHHHHSCCC---
T ss_pred HHHHHHcCC-----------------------CcEEEECCc----cccCCCccCCCEEEEeCCCCCHHHhhhhcCcccCC
Confidence 999999985 899999999 99999999999999999999999999999997 4
Q ss_pred CCCCeEEEEEeCchhHHHHHHHHHhcccccccCccccccC
Q 028124 174 AADGSVINIVVGGEVVTLRSMEESLGLIVAEVPINISEIL 213 (213)
Q Consensus 174 ~~~g~~i~~~~~~e~~~~~~le~~l~~~~~~~~~~~~~~~ 213 (213)
|+.|.|+.|+++.+...++.+++.++..++++|.++.++|
T Consensus 375 g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 414 (414)
T 3eiq_A 375 GRKGVAINMVTEEDKRTLRDIETFYNTSIEEMPLNVADLI 414 (414)
T ss_dssp ----CEEEEECSTHHHHHHHHHHHTTCCCEECCC------
T ss_pred CCCceEEEEEcHHHHHHHHHHHHHHcCCccccChhhhhcC
Confidence 6679999999999999999999999999999999998875
No 13
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=99.95 E-value=2.3e-26 Score=203.06 Aligned_cols=161 Identities=24% Similarity=0.437 Sum_probs=147.6
Q ss_pred CCCCceEEEEEecCcchHHHHHHHHHHHhhcCCCCCCcEEEEeCchHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHH
Q 028124 18 HFSQPRHFYVAVDRLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLIL 97 (213)
Q Consensus 18 ~~~~i~~~~~~~~~~~~K~~~L~~ll~~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~lhg~~~~~~R~~~l 97 (213)
...++.+++..+.... |...+..+++. ....++||||++++.++.+++.|...+ +.+..+||+|++.+|..++
T Consensus 229 ~~~~~~~~~~~~~~~~-k~~~l~~~~~~-----~~~~~~lVf~~~~~~~~~l~~~L~~~~-~~~~~~~~~~~~~~r~~~~ 301 (400)
T 1s2m_A 229 TLKGITQYYAFVEERQ-KLHCLNTLFSK-----LQINQAIIFCNSTNRVELLAKKITDLG-YSCYYSHARMKQQERNKVF 301 (400)
T ss_dssp BCTTEEEEEEECCGGG-HHHHHHHHHHH-----SCCSEEEEECSSHHHHHHHHHHHHHHT-CCEEEECTTSCHHHHHHHH
T ss_pred ccCCceeEEEEechhh-HHHHHHHHHhh-----cCCCcEEEEEecHHHHHHHHHHHHhcC-CCeEEecCCCCHHHHHHHH
Confidence 4567888888887765 99999999887 456799999999999999999999887 7999999999999999999
Q ss_pred HHHhcccccccccccccCCCCCcCCCCCCceeEEEEeCCCCCcCcCCCCCCCCCEEEEecCCCChHHHHHhhccc--cCC
Q 028124 98 EEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTC--LAA 175 (213)
Q Consensus 98 ~~Fr~g~~~~~~~~~~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~rGld~~~v~~VI~yd~P~~~~~yi~R~GR~--~~~ 175 (213)
++|++|. .++||||++ +++|+|+|++++||+||+|++...|+||+||+ .|+
T Consensus 302 ~~f~~g~-----------------------~~vLv~T~~----~~~Gidip~~~~Vi~~~~p~s~~~~~Qr~GR~gR~g~ 354 (400)
T 1s2m_A 302 HEFRQGK-----------------------VRTLVCSDL----LTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGH 354 (400)
T ss_dssp HHHHTTS-----------------------SSEEEESSC----SSSSCCCTTEEEEEESSCCSSHHHHHHHHCBSSCTTC
T ss_pred HHHhcCC-----------------------CcEEEEcCc----cccCCCccCCCEEEEeCCCCCHHHHHHhcchhcCCCC
Confidence 9999985 999999999 99999999999999999999999999999997 467
Q ss_pred CCeEEEEEeCchhHHHHHHHHHhcccccccCcccccc
Q 028124 176 DGSVINIVVGGEVVTLRSMEESLGLIVAEVPINISEI 212 (213)
Q Consensus 176 ~g~~i~~~~~~e~~~~~~le~~l~~~~~~~~~~~~~~ 212 (213)
.|.|+.|+.++|...++++++.++.+++++|..+.+.
T Consensus 355 ~g~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 391 (400)
T 1s2m_A 355 LGLAINLINWNDRFNLYKIEQELGTEIAAIPATIDKS 391 (400)
T ss_dssp CEEEEEEECGGGHHHHHHHHHHHTCCCEECCSSCCGG
T ss_pred CceEEEEeccchHHHHHHHHHHhCCCccccccccccc
Confidence 7999999999999999999999999999999887664
No 14
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=99.94 E-value=2.6e-25 Score=195.23 Aligned_cols=160 Identities=18% Similarity=0.353 Sum_probs=144.2
Q ss_pred CCCCCceEEEEEecCcchHHHHHHHHHHHhhcCCCCCCcEEEEeCchHHHHHHHHHHhccCCceEEEecCCCCHHHHHHH
Q 028124 17 SHFSQPRHFYVAVDRLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLI 96 (213)
Q Consensus 17 ~~~~~i~~~~~~~~~~~~K~~~L~~ll~~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~lhg~~~~~~R~~~ 96 (213)
.....+.+++..+.... |...|.++++. ....++||||+++++++.+++.|...+ +.+..+||++++++|..+
T Consensus 220 ~~~~~~~~~~~~~~~~~-~~~~l~~~l~~-----~~~~~~lvf~~~~~~~~~l~~~L~~~~-~~~~~~~~~~~~~~r~~~ 292 (391)
T 1xti_A 220 LTLHGLQQYYVKLKDNE-KNRKLFDLLDV-----LEFNQVVIFVKSVQRCIALAQLLVEQN-FPAIAIHRGMPQEERLSR 292 (391)
T ss_dssp CCCTTCEEEEEECCGGG-HHHHHHHHHHH-----SCCSEEEEECSCHHHHHHHHHHHHHTT-CCEEEECTTSCHHHHHHH
T ss_pred cCcccceEEEEEcCchh-HHHHHHHHHHh-----cCCCcEEEEeCcHHHHHHHHHHHHhCC-CcEEEEeCCCCHHHHHHH
Confidence 34567888888887766 99999999987 466899999999999999999999987 899999999999999999
Q ss_pred HHHHhcccccccccccccCCCCCcCCCCCCceeEEEEeCCCCCcCcCCCCCCCCCEEEEecCCCChHHHHHhhccc--cC
Q 028124 97 LEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTC--LA 174 (213)
Q Consensus 97 l~~Fr~g~~~~~~~~~~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~rGld~~~v~~VI~yd~P~~~~~yi~R~GR~--~~ 174 (213)
+++|++|. .++||||++ +++|+|+|++++||+||+|++...|+||+||+ .|
T Consensus 293 ~~~f~~~~-----------------------~~vlv~T~~----~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g 345 (391)
T 1xti_A 293 YQQFKDFQ-----------------------RRILVATNL----FGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFG 345 (391)
T ss_dssp HHHHHTTC-----------------------CSEEEESCC----CSSCBCCTTEEEEEESSCCSSHHHHHHHHCBCSSSC
T ss_pred HHHHhcCC-----------------------CcEEEECCh----hhcCCCcccCCEEEEeCCCCCHHHHHHhcccccCCC
Confidence 99999985 899999999 99999999999999999999999999999997 45
Q ss_pred CCCeEEEEEeCc-hhHHHHHHHHHhcccccccCcccc
Q 028124 175 ADGSVINIVVGG-EVVTLRSMEESLGLIVAEVPINIS 210 (213)
Q Consensus 175 ~~g~~i~~~~~~-e~~~~~~le~~l~~~~~~~~~~~~ 210 (213)
+.|.|+.++.+. +...++.+++.++..++++|..+.
T Consensus 346 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (391)
T 1xti_A 346 TKGLAITFVSDENDAKILNDVQDRFEVNISELPDEID 382 (391)
T ss_dssp CCCEEEEEECSHHHHHHHHHHHHHTTCCCEECCSCCC
T ss_pred CceEEEEEEcccchHHHHHHHHHHhcCChhhCCcccc
Confidence 779999999876 667889999999999999986543
No 15
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=99.94 E-value=3.2e-26 Score=202.91 Aligned_cols=162 Identities=20% Similarity=0.261 Sum_probs=144.1
Q ss_pred CCCCCceEEEEEecCcchHHHHHHHHHHHhhcCCCCCCcEEEEeCchHHHHHHHHHHhccCCceEEEecCCCCHHHHHHH
Q 028124 17 SHFSQPRHFYVAVDRLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLI 96 (213)
Q Consensus 17 ~~~~~i~~~~~~~~~~~~K~~~L~~ll~~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~lhg~~~~~~R~~~ 96 (213)
....++.+.+..++..+ |...|.++++. .....++||||++++.++.+++.|...+ +.+..+||++++++|.++
T Consensus 245 ~~~~~i~~~~~~~~~~~-~~~~l~~~l~~----~~~~~~~lVf~~~~~~~~~l~~~L~~~~-~~~~~~h~~~~~~~r~~~ 318 (417)
T 2i4i_A 245 STSENITQKVVWVEESD-KRSFLLDLLNA----TGKDSLTLVFVETKKGADSLEDFLYHEG-YACTSIHGDRSQRDREEA 318 (417)
T ss_dssp -CCSSEEEEEEECCGGG-HHHHHHHHHHT----CCTTCEEEEECSSHHHHHHHHHHHHHTT-CCEEEECTTSCHHHHHHH
T ss_pred CCccCceEEEEEeccHh-HHHHHHHHHHh----cCCCCeEEEEECCHHHHHHHHHHHHHCC-CCeeEecCCCCHHHHHHH
Confidence 34567889998888766 99999999987 3457899999999999999999999987 899999999999999999
Q ss_pred HHHHhcccccccccccccCCCCCcCCCCCCceeEEEEeCCCCCcCcCCCCCCCCCEEEEecCCCChHHHHHhhcccc--C
Q 028124 97 LEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCL--A 174 (213)
Q Consensus 97 l~~Fr~g~~~~~~~~~~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~rGld~~~v~~VI~yd~P~~~~~yi~R~GR~~--~ 174 (213)
+++|++|. .++||||++ +++|+|+|++++||+||+|++..+|+||+||++ |
T Consensus 319 ~~~f~~g~-----------------------~~vlvaT~~----~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g 371 (417)
T 2i4i_A 319 LHQFRSGK-----------------------SPILVATAV----AARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVG 371 (417)
T ss_dssp HHHHHHTS-----------------------SCEEEECHH----HHTTSCCCCEEEEEESSCCSSHHHHHHHHTTBCC--
T ss_pred HHHHHcCC-----------------------CCEEEECCh----hhcCCCcccCCEEEEEcCCCCHHHHHHhcCccccCC
Confidence 99999985 899999999 999999999999999999999999999999974 6
Q ss_pred CCCeEEEEEeCchhHHHHHHHHHhcccccccCccccc
Q 028124 175 ADGSVINIVVGGEVVTLRSMEESLGLIVAEVPINISE 211 (213)
Q Consensus 175 ~~g~~i~~~~~~e~~~~~~le~~l~~~~~~~~~~~~~ 211 (213)
+.|.|+.|+++.+...+..+.+.+.....++|..+.+
T Consensus 372 ~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~ 408 (417)
T 2i4i_A 372 NLGLATSFFNERNINITKDLLDLLVEAKQEVPSWLEN 408 (417)
T ss_dssp CCEEEEEEECGGGGGGHHHHHHHHHHTTCCCCHHHHH
T ss_pred CCceEEEEEccccHHHHHHHHHHHHHhcCcCCHHHHH
Confidence 6799999999999999999999998777777755443
No 16
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=99.93 E-value=2.2e-25 Score=196.70 Aligned_cols=160 Identities=19% Similarity=0.344 Sum_probs=142.0
Q ss_pred CCCCCceEEEEEecCcchHHHHHHHHHHHhhcCCCCCCcEEEEeCchHHHHHHHHHHhccCCceEEEecCCCCHHHHHHH
Q 028124 17 SHFSQPRHFYVAVDRLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLI 96 (213)
Q Consensus 17 ~~~~~i~~~~~~~~~~~~K~~~L~~ll~~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~lhg~~~~~~R~~~ 96 (213)
.....+.+.+..+.....|...|.+++.. ....++||||++++.++.+++.|...+ +.+..+||+|++++|.++
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~~~lvf~~~~~~~~~l~~~L~~~~-~~~~~~~~~~~~~~r~~~ 308 (412)
T 3fht_A 235 ETLDTIKQYYVLCSSRDEKFQALCNLYGA-----ITIAQAMIFCHTRKTASWLAAELSKEG-HQVALLSGEMMVEQRAAV 308 (412)
T ss_dssp SSCTTEEEEEEECSSHHHHHHHHHHHHHH-----HSSSEEEEECSSHHHHHHHHHHHHHTT-CCCEEECTTSCHHHHHHH
T ss_pred ccccCceEEEEEcCChHHHHHHHHHHHhh-----cCCCCEEEEeCCHHHHHHHHHHHHhCC-CeEEEecCCCCHHHHHHH
Confidence 44667899999998888899999999987 345799999999999999999999987 799999999999999999
Q ss_pred HHHHhcccccccccccccCCCCCcCCCCCCceeEEEEeCCCCCcCcCCCCCCCCCEEEEecCCC------ChHHHHHhhc
Q 028124 97 LEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPT------KKETYIRRMT 170 (213)
Q Consensus 97 l~~Fr~g~~~~~~~~~~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~rGld~~~v~~VI~yd~P~------~~~~yi~R~G 170 (213)
+++|++|. .++||||++ +++|+|+|++++||+||+|+ +..+|+||+|
T Consensus 309 ~~~f~~g~-----------------------~~vlv~T~~----~~~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~G 361 (412)
T 3fht_A 309 IERFREGK-----------------------EKVLVTTNV----CARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIG 361 (412)
T ss_dssp HHHHHTTS-----------------------CSEEEECGG----GTSSCCCTTEEEEEESSCCBCSSSSBCHHHHHHHHT
T ss_pred HHHHHCCC-----------------------CcEEEEcCc----cccCCCccCCCEEEEECCCCCCCCCcchheeecccC
Confidence 99999985 899999999 99999999999999999994 6789999999
Q ss_pred ccc--CCCCeEEEEEeCc-hhHHHHHHHHHhcccccccCccc
Q 028124 171 TCL--AADGSVINIVVGG-EVVTLRSMEESLGLIVAEVPINI 209 (213)
Q Consensus 171 R~~--~~~g~~i~~~~~~-e~~~~~~le~~l~~~~~~~~~~~ 209 (213)
|++ |+.|.++.++.+. +...++.+++.++..+.+++.+-
T Consensus 362 R~gR~g~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 403 (412)
T 3fht_A 362 RTGRFGKRGLAVNMVDSKHSMNILNRIQEHFNKKIERLDTDD 403 (412)
T ss_dssp TSSCTTCCEEEEEEECSHHHHHHHHHHHHHHTCCCEEC----
T ss_pred cccCCCCCceEEEEEcChhhHHHHHHHHHHHCCccccCCCcc
Confidence 974 6779999999876 58899999999999999887643
No 17
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=99.93 E-value=7.3e-25 Score=189.92 Aligned_cols=154 Identities=23% Similarity=0.452 Sum_probs=140.4
Q ss_pred CCCceEEEEEecCcchHHHHHHHHHHHhhcCCCCCCcEEEEeCchHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHH
Q 028124 19 FSQPRHFYVAVDRLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILE 98 (213)
Q Consensus 19 ~~~i~~~~~~~~~~~~K~~~L~~ll~~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~lhg~~~~~~R~~~l~ 98 (213)
..++.+.+..+...+ |++.|.++++. ...++||||++++.++.+++.|+..+ +.+..+||+++.++|.++++
T Consensus 211 ~~~~~~~~~~~~~~~-~~~~l~~~l~~------~~~~~lvf~~~~~~~~~l~~~L~~~~-~~~~~~~~~~~~~~r~~~~~ 282 (367)
T 1hv8_A 211 NANIEQSYVEVNENE-RFEALCRLLKN------KEFYGLVFCKTKRDTKELASMLRDIG-FKAGAIHGDLSQSQREKVIR 282 (367)
T ss_dssp SSSSEEEEEECCGGG-HHHHHHHHHCS------TTCCEEEECSSHHHHHHHHHHHHHTT-CCEEEECSSSCHHHHHHHHH
T ss_pred CCCceEEEEEeChHH-HHHHHHHHHhc------CCCcEEEEECCHHHHHHHHHHHHhcC-CCeEEeeCCCCHHHHHHHHH
Confidence 347888888887766 99888888764 56799999999999999999999987 79999999999999999999
Q ss_pred HHhcccccccccccccCCCCCcCCCCCCceeEEEEeCCCCCcCcCCCCCCCCCEEEEecCCCChHHHHHhhccc--cCCC
Q 028124 99 EFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTC--LAAD 176 (213)
Q Consensus 99 ~Fr~g~~~~~~~~~~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~rGld~~~v~~VI~yd~P~~~~~yi~R~GR~--~~~~ 176 (213)
+|++|. .++||||++ +++|+|+|++++||+|++|++..+|+||+||+ .|+.
T Consensus 283 ~f~~~~-----------------------~~vlv~T~~----~~~Gid~~~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~ 335 (367)
T 1hv8_A 283 LFKQKK-----------------------IRILIATDV----MSRGIDVNDLNCVINYHLPQNPESYMHRIGRTGRAGKK 335 (367)
T ss_dssp HHHTTS-----------------------SSEEEECTT----HHHHCCCSCCSEEEESSCCSCHHHHHHHSTTTCCSSSC
T ss_pred HHHcCC-----------------------CeEEEECCh----hhcCCCcccCCEEEEecCCCCHHHhhhcccccccCCCc
Confidence 999984 999999999 99999999999999999999999999999997 4567
Q ss_pred CeEEEEEeCchhHHHHHHHHHhcccccccCc
Q 028124 177 GSVINIVVGGEVVTLRSMEESLGLIVAEVPI 207 (213)
Q Consensus 177 g~~i~~~~~~e~~~~~~le~~l~~~~~~~~~ 207 (213)
|.++.++.+.+...++.+++.++.+++++++
T Consensus 336 g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 366 (367)
T 1hv8_A 336 GKAISIINRREYKKLRYIERAMKLKIKKLKF 366 (367)
T ss_dssp CEEEEEECTTSHHHHHHHHHHHTCCCCCBC-
T ss_pred cEEEEEEcHHHHHHHHHHHHHhCCCCceecc
Confidence 9999999999999999999999999998764
No 18
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=99.92 E-value=2e-24 Score=188.96 Aligned_cols=159 Identities=23% Similarity=0.419 Sum_probs=141.6
Q ss_pred CCCCCceEEEEEecCcchHHHHHHHHHHHhhcCCCCCCcEEEEeCchHHHHHHHHHHhccCCceEEEecCCCCHHHHHHH
Q 028124 17 SHFSQPRHFYVAVDRLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLI 96 (213)
Q Consensus 17 ~~~~~i~~~~~~~~~~~~K~~~L~~ll~~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~lhg~~~~~~R~~~ 96 (213)
.....+.+.+..+.....|...+.+++.. ....++||||++++.++.+++.|+..+ +.+..+||+|++++|.++
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~~~lvf~~~~~~~~~l~~~l~~~~-~~~~~~~~~~~~~~r~~~ 285 (395)
T 3pey_A 212 VNVDAIKQLYMDCKNEADKFDVLTELYGL-----MTIGSSIIFVATKKTANVLYGKLKSEG-HEVSILHGDLQTQERDRL 285 (395)
T ss_dssp CSCTTEEEEEEECSSHHHHHHHHHHHHTT-----TTSSEEEEECSCHHHHHHHHHHHHHTT-CCCEEECTTSCHHHHHHH
T ss_pred cccccccEEEEEcCchHHHHHHHHHHHHh-----ccCCCEEEEeCCHHHHHHHHHHHHhcC-CcEEEeCCCCCHHHHHHH
Confidence 44567889999888877799998888876 456899999999999999999999987 799999999999999999
Q ss_pred HHHHhcccccccccccccCCCCCcCCCCCCceeEEEEeCCCCCcCcCCCCCCCCCEEEEecCCC------ChHHHHHhhc
Q 028124 97 LEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPT------KKETYIRRMT 170 (213)
Q Consensus 97 l~~Fr~g~~~~~~~~~~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~rGld~~~v~~VI~yd~P~------~~~~yi~R~G 170 (213)
+++|++|. .++||||++ +++|+|+|++++||+||+|+ +..+|+||+|
T Consensus 286 ~~~f~~g~-----------------------~~vlv~T~~----~~~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~G 338 (395)
T 3pey_A 286 IDDFREGR-----------------------SKVLITTNV----LARGIDIPTVSMVVNYDLPTLANGQADPATYIHRIG 338 (395)
T ss_dssp HHHHHTTS-----------------------CCEEEECGG----GSSSCCCTTEEEEEESSCCBCTTSSBCHHHHHHHHT
T ss_pred HHHHHCCC-----------------------CCEEEECCh----hhcCCCcccCCEEEEcCCCCCCcCCCCHHHhhHhcc
Confidence 99999985 899999999 99999999999999999999 9999999999
Q ss_pred cc--cCCCCeEEEEEeC-chhHHHHHHHHHhc-ccccccCcc
Q 028124 171 TC--LAADGSVINIVVG-GEVVTLRSMEESLG-LIVAEVPIN 208 (213)
Q Consensus 171 R~--~~~~g~~i~~~~~-~e~~~~~~le~~l~-~~~~~~~~~ 208 (213)
|+ .|+.|.++.++.. ++...++.+++.++ .++.+++.+
T Consensus 339 R~gR~g~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 380 (395)
T 3pey_A 339 RTGRFGRKGVAISFVHDKNSFNILSAIQKYFGDIEMTRVPTD 380 (395)
T ss_dssp TSSCTTCCEEEEEEECSHHHHHHHHHHHHHTTSCCCEECCSS
T ss_pred ccccCCCCceEEEEEechHHHHHHHHHHHHhCCceeecCChH
Confidence 97 4677999999986 46778899999988 777777643
No 19
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=99.92 E-value=3.8e-24 Score=197.97 Aligned_cols=161 Identities=17% Similarity=0.334 Sum_probs=135.9
Q ss_pred CCCCCCceEEEEEecCcchHHHHHHHHH-HHhhcCCCCCCcEEEEeCchHHHHHHHHHHhcc---CCceEEEecCCCCHH
Q 028124 16 PSHFSQPRHFYVAVDRLQFKMETLVELL-HLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNL---ADISFSSLHSDLAET 91 (213)
Q Consensus 16 ~~~~~~i~~~~~~~~~~~~K~~~L~~ll-~~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~---~~~~~~~lhg~~~~~ 91 (213)
+.....+.+.+...+....+...+...+ +.+.. ...+.++||||+++..|+.+++.|... + +.+..+||+|++.
T Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~-~~v~~~h~~~~~~ 379 (563)
T 3i5x_A 302 PEAHERIDQSVVISEKFANSIFAAVEHIKKQIKE-RDSNYKAIIFAPTVKFTSFLCSILKNEFKKD-LPILEFHGKITQN 379 (563)
T ss_dssp CSSCTTEEEEEEEESSTTHHHHHHHHHHHHHHHH-TTTCCEEEEECSCHHHHHHHHHHHHHHHTTT-SCEEEESTTSCHH
T ss_pred ccccccCceEEEECchhHhhHHHHHHHHHHHHhh-cCCCCcEEEEcCcHHHHHHHHHHHHHhccCC-ceEEEecCCCCHH
Confidence 4455678888888776554544433333 32221 356789999999999999999999875 5 7999999999999
Q ss_pred HHHHHHHHHhcccccccccccccCCCCCcCCCCCCceeEEEEeCCCCCcCcCCCCCCCCCEEEEecCCCChHHHHHhhcc
Q 028124 92 ERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTT 171 (213)
Q Consensus 92 ~R~~~l~~Fr~g~~~~~~~~~~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~rGld~~~v~~VI~yd~P~~~~~yi~R~GR 171 (213)
+|..++++|++|. .+|||||++ +++|+|+|++++||+||+|.++++|+||+||
T Consensus 380 ~R~~~~~~f~~g~-----------------------~~vLvaT~~----~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GR 432 (563)
T 3i5x_A 380 KRTSLVKRFKKDE-----------------------SGILVCTDV----GARGMDFPNVHEVLQIGVPSELANYIHRIGR 432 (563)
T ss_dssp HHHHHHHHHHHCS-----------------------SEEEEECGG----GTSSCCCTTCCEEEEESCCSSTTHHHHHHTT
T ss_pred HHHHHHHHHhcCC-----------------------CCEEEEcch----hhcCCCcccCCEEEEECCCCchhhhhhhcCc
Confidence 9999999999985 999999999 9999999999999999999999999999999
Q ss_pred c--cCCCCeEEEEEeCchhHHHHHHHHHhccccccc
Q 028124 172 C--LAADGSVINIVVGGEVVTLRSMEESLGLIVAEV 205 (213)
Q Consensus 172 ~--~~~~g~~i~~~~~~e~~~~~~le~~l~~~~~~~ 205 (213)
+ .|+.|.|+.|+.+.|...++.+++..+..+.+.
T Consensus 433 agR~g~~g~~i~~~~~~e~~~~~~l~~~~~~~~~~~ 468 (563)
T 3i5x_A 433 TARSGKEGSSVLFICKDELPFVRELEDAKNIVIAKQ 468 (563)
T ss_dssp SSCTTCCEEEEEEEEGGGHHHHHHHHHHHCCCCCEE
T ss_pred cccCCCCceEEEEEchhHHHHHHHHHHHhCCCcccc
Confidence 7 456799999999999999999999888776543
No 20
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=99.92 E-value=8.5e-24 Score=197.24 Aligned_cols=161 Identities=17% Similarity=0.334 Sum_probs=135.3
Q ss_pred CCCCCCceEEEEEecCcchHHHHHHH-HHHHhhcCCCCCCcEEEEeCchHHHHHHHHHHhcc---CCceEEEecCCCCHH
Q 028124 16 PSHFSQPRHFYVAVDRLQFKMETLVE-LLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNL---ADISFSSLHSDLAET 91 (213)
Q Consensus 16 ~~~~~~i~~~~~~~~~~~~K~~~L~~-ll~~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~---~~~~~~~lhg~~~~~ 91 (213)
+.....+.+.+........+...+.+ +.+.+.. .....++||||+++..|+.+++.|... + +.+..+||+|++.
T Consensus 251 ~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~~-~~v~~~hg~~~~~ 328 (579)
T 3sqw_A 251 PEAHERIDQSVVISEKFANSIFAAVEHIKKQIKE-RDSNYKAIIFAPTVKFTSFLCSILKNEFKKD-LPILEFHGKITQN 328 (579)
T ss_dssp CSSCTTEEEEEEEESSTTHHHHHHHHHHHHHHHH-TTTCCEEEEECSSHHHHHHHHHHHHHHHTTT-SCEEEESTTSCHH
T ss_pred cccccccceEEEEecchhhhHHHHHHHHHHHHhh-cCCCCcEEEECCcHHHHHHHHHHHHHhhcCC-CcEEEecCCCCHH
Confidence 44556788888887765434433333 3333221 345789999999999999999999876 5 7999999999999
Q ss_pred HHHHHHHHHhcccccccccccccCCCCCcCCCCCCceeEEEEeCCCCCcCcCCCCCCCCCEEEEecCCCChHHHHHhhcc
Q 028124 92 ERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTT 171 (213)
Q Consensus 92 ~R~~~l~~Fr~g~~~~~~~~~~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~rGld~~~v~~VI~yd~P~~~~~yi~R~GR 171 (213)
+|.+++++|+.|+ .++||||++ +++|+|+|++++||+||+|.+++.|+||+||
T Consensus 329 ~R~~~~~~F~~g~-----------------------~~vLVaT~~----~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GR 381 (579)
T 3sqw_A 329 KRTSLVKRFKKDE-----------------------SGILVCTDV----GARGMDFPNVHEVLQIGVPSELANYIHRIGR 381 (579)
T ss_dssp HHHHHHHHHHHCS-----------------------SEEEEECGG----GTSSCCCTTCCEEEEESCCSSTTHHHHHHTT
T ss_pred HHHHHHHHhhcCC-----------------------CeEEEEcch----hhcCCCcccCCEEEEcCCCCCHHHhhhhccc
Confidence 9999999999985 999999999 9999999999999999999999999999999
Q ss_pred c--cCCCCeEEEEEeCchhHHHHHHHHHhccccccc
Q 028124 172 C--LAADGSVINIVVGGEVVTLRSMEESLGLIVAEV 205 (213)
Q Consensus 172 ~--~~~~g~~i~~~~~~e~~~~~~le~~l~~~~~~~ 205 (213)
+ .|+.|.|+.|+.+.|...++.+++..+..+.+.
T Consensus 382 agR~g~~g~~i~~~~~~e~~~~~~l~~~~~~~~~~~ 417 (579)
T 3sqw_A 382 TARSGKEGSSVLFICKDELPFVRELEDAKNIVIAKQ 417 (579)
T ss_dssp SSCTTCCEEEEEEEEGGGHHHHHHHHHHHCCCCCEE
T ss_pred cccCCCCceEEEEEcccHHHHHHHHHHHhCCCcccc
Confidence 7 567899999999999999999999887776543
No 21
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=99.91 E-value=1.9e-26 Score=202.39 Aligned_cols=163 Identities=29% Similarity=0.541 Sum_probs=0.0
Q ss_pred CCCCceEEEEEecCcchHHHHHHHHHHHhhcCCCCCCcEEEEeCchHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHH
Q 028124 18 HFSQPRHFYVAVDRLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLIL 97 (213)
Q Consensus 18 ~~~~i~~~~~~~~~~~~K~~~L~~ll~~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~lhg~~~~~~R~~~l 97 (213)
...++.+++..+...+.|...+.++++. ....++||||++++.++.+++.|...+ +.+..+||+|++.+|..++
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~~~lVf~~~~~~~~~l~~~L~~~~-~~~~~~~~~~~~~~r~~~~ 302 (394)
T 1fuu_A 229 TLEGIKQFYVNVEEEEYKYECLTDLYDS-----ISVTQAVIFCNTRRKVEELTTKLRNDK-FTVSAIYSDLPQQERDTIM 302 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCCCceEEEEEcCchhhHHHHHHHHHhc-----CCCCcEEEEECCHHHHHHHHHHHHHcC-CeEEEeeCCCCHHHHHHHH
Confidence 3456788888888777788888888876 345799999999999999999999887 7999999999999999999
Q ss_pred HHHhcccccccccccccCCCCCcCCCCCCceeEEEEeCCCCCcCcCCCCCCCCCEEEEecCCCChHHHHHhhccc--cCC
Q 028124 98 EEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTC--LAA 175 (213)
Q Consensus 98 ~~Fr~g~~~~~~~~~~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~rGld~~~v~~VI~yd~P~~~~~yi~R~GR~--~~~ 175 (213)
++|++|. .++||||++ +++|+|+|++++||+||+|++...|+||+||+ .|+
T Consensus 303 ~~f~~~~-----------------------~~vlv~T~~----~~~Gldi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~ 355 (394)
T 1fuu_A 303 KEFRSGS-----------------------SRILISTDL----LARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGR 355 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHCCC-----------------------CcEEEECCh----hhcCCCcccCCEEEEeCCCCCHHHHHHHcCcccCCCC
Confidence 9999985 899999999 99999999999999999999999999999997 457
Q ss_pred CCeEEEEEeCchhHHHHHHHHHhcccccccCccccccC
Q 028124 176 DGSVINIVVGGEVVTLRSMEESLGLIVAEVPINISEIL 213 (213)
Q Consensus 176 ~g~~i~~~~~~e~~~~~~le~~l~~~~~~~~~~~~~~~ 213 (213)
.|.|+.++.+.+...++.++++++.+++++|.++.++|
T Consensus 356 ~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 393 (394)
T 1fuu_A 356 KGVAINFVTNEDVGAMRELEKFYSTQIEELPSDIATLL 393 (394)
T ss_dssp --------------------------------------
T ss_pred CceEEEEEchhHHHHHHHHHHHhCCcccccCcchhhhc
Confidence 89999999999999999999999999999998887764
No 22
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=99.90 E-value=1.5e-25 Score=203.87 Aligned_cols=159 Identities=19% Similarity=0.368 Sum_probs=0.0
Q ss_pred CCCCCceEEEEEecCcchHHHHHHHHHHHhhcCCCCCCcEEEEeCchHHHHHHHHHHhccCCceEEEecCCCCHHHHHHH
Q 028124 17 SHFSQPRHFYVAVDRLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLI 96 (213)
Q Consensus 17 ~~~~~i~~~~~~~~~~~~K~~~L~~ll~~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~lhg~~~~~~R~~~ 96 (213)
.....+.|.++.+.....|...|..++.. ....++||||+++..++.++..|...+ +.+..+||+|++.+|..+
T Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~~~lvF~~s~~~~~~l~~~L~~~~-~~v~~lh~~~~~~~R~~~ 375 (479)
T 3fmp_B 302 ETLDTIKQYYVLCSSRDEKFQALCNLYGA-----ITIAQAMIFCHTRKTASWLAAELSKEG-HQVALLSGEMMVEQRAAV 375 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCcCCceEEEEEeCCHHHHHHHHHHHHhh-----ccCCceEEEeCcHHHHHHHHHHHHhCC-ccEEEecCCCCHHHHHHH
Confidence 34567888898888877799999998876 345799999999999999999999887 799999999999999999
Q ss_pred HHHHhcccccccccccccCCCCCcCCCCCCceeEEEEeCCCCCcCcCCCCCCCCCEEEEecCCC------ChHHHHHhhc
Q 028124 97 LEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPT------KKETYIRRMT 170 (213)
Q Consensus 97 l~~Fr~g~~~~~~~~~~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~rGld~~~v~~VI~yd~P~------~~~~yi~R~G 170 (213)
+++|++|. .++||||++ +++|+|+|++++|||||+|. +..+|+||+|
T Consensus 376 ~~~f~~g~-----------------------~~iLv~T~~----~~~GlDip~v~~VI~~d~p~~~~~~~s~~~~~Qr~G 428 (479)
T 3fmp_B 376 IERFREGK-----------------------EKVLVTTNV----CARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIG 428 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHcCC-----------------------CcEEEEccc----cccCCccccCCEEEEecCCCCCccCCCHHHHHHHhc
Confidence 99999985 999999999 99999999999999999995 5689999999
Q ss_pred cc--cCCCCeEEEEEeCc-hhHHHHHHHHHhcccccccCcc
Q 028124 171 TC--LAADGSVINIVVGG-EVVTLRSMEESLGLIVAEVPIN 208 (213)
Q Consensus 171 R~--~~~~g~~i~~~~~~-e~~~~~~le~~l~~~~~~~~~~ 208 (213)
|+ .|+.|.|+.|+.+. +...++.+++.++.++.+++.+
T Consensus 429 RagR~g~~G~~i~~~~~~~~~~~~~~i~~~~~~~~~~l~~~ 469 (479)
T 3fmp_B 429 RTGRFGKRGLAVNMVDSKHSMNILNRIQEHFNKKIERLDTD 469 (479)
T ss_dssp -----------------------------------------
T ss_pred ccccCCCCceEEEEEcCcchHHHHHHHHHHhCCCceECCCc
Confidence 97 46789999999865 4888999999999999887754
No 23
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=99.89 E-value=1.6e-22 Score=187.39 Aligned_cols=142 Identities=18% Similarity=0.351 Sum_probs=122.2
Q ss_pred CCCCceEEEEEecCcchHHHHHHHHHHHhhcCCCCCCcEEEEeCchHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHH
Q 028124 18 HFSQPRHFYVAVDRLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLIL 97 (213)
Q Consensus 18 ~~~~i~~~~~~~~~~~~K~~~L~~ll~~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~lhg~~~~~~R~~~l 97 (213)
.++++. |...+... +.+.|.++++. .++.++||||++++.++.+++.|...+ +.+..+||+|++++|..++
T Consensus 209 ~r~~l~--~~v~~~~~-~~~~l~~~l~~-----~~~~~~IVf~~sr~~~e~l~~~L~~~g-~~~~~~h~~l~~~~R~~~~ 279 (523)
T 1oyw_A 209 DRPNIR--YMLMEKFK-PLDQLMRYVQE-----QRGKSGIIYCNSRAKVEDTAARLQSKG-ISAAAYHAGLENNVRADVQ 279 (523)
T ss_dssp CCTTEE--EEEEECSS-HHHHHHHHHHH-----TTTCCEEEECSSHHHHHHHHHHHHHTT-CCEEEECTTSCHHHHHHHH
T ss_pred CCCceE--EEEEeCCC-HHHHHHHHHHh-----cCCCcEEEEeCCHHHHHHHHHHHHHCC-CCEEEecCCCCHHHHHHHH
Confidence 344554 33334444 88888888876 356899999999999999999999987 8999999999999999999
Q ss_pred HHHhcccccccccccccCCCCCcCCCCCCceeEEEEeCCCCCcCcCCCCCCCCCEEEEecCCCChHHHHHhhcccc--CC
Q 028124 98 EEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCL--AA 175 (213)
Q Consensus 98 ~~Fr~g~~~~~~~~~~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~rGld~~~v~~VI~yd~P~~~~~yi~R~GR~~--~~ 175 (213)
++|++|+ .++||||++ +++|+|+|++++|||||+|++.+.|+||+||+| |.
T Consensus 280 ~~f~~g~-----------------------~~vlVaT~a----~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRaGR~g~ 332 (523)
T 1oyw_A 280 EKFQRDD-----------------------LQIVVATVA----FGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGL 332 (523)
T ss_dssp HHHHTTS-----------------------CSEEEECTT----SCTTTCCTTCCEEEESSCCSSHHHHHHHHTTSCTTSS
T ss_pred HHHHcCC-----------------------CeEEEEech----hhCCCCccCccEEEEECCCCCHHHHHHHhccccCCCC
Confidence 9999985 999999999 999999999999999999999999999999974 66
Q ss_pred CCeEEEEEeCchhHHHHHHH
Q 028124 176 DGSVINIVVGGEVVTLRSME 195 (213)
Q Consensus 176 ~g~~i~~~~~~e~~~~~~le 195 (213)
+|.|+.|+.+.|...++.+.
T Consensus 333 ~~~~~l~~~~~d~~~~~~~~ 352 (523)
T 1oyw_A 333 PAEAMLFYDPADMAWLRRCL 352 (523)
T ss_dssp CEEEEEEECHHHHHHHHHHH
T ss_pred CceEEEEeCHHHHHHHHHHH
Confidence 79999999887776655443
No 24
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=99.89 E-value=2e-22 Score=189.56 Aligned_cols=146 Identities=18% Similarity=0.234 Sum_probs=119.6
Q ss_pred CCCCCceEEEEEecC-cchHHHHHHHHHHHhhcCCCCCCcEEEEeCchHHHHHHHHHHhccCCceEEEecCCCCHHHHHH
Q 028124 17 SHFSQPRHFYVAVDR-LQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTL 95 (213)
Q Consensus 17 ~~~~~i~~~~~~~~~-~~~K~~~L~~ll~~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~lhg~~~~~~R~~ 95 (213)
..++++...+..... ...+++.|.++++. ..++.++||||++++.++.+++.|...| +.+..+||+|++++|.+
T Consensus 234 ~~r~nl~~~v~~~~~~~~~~~~~l~~~l~~----~~~~~~~IVf~~sr~~~e~la~~L~~~g-~~~~~~h~~l~~~~R~~ 308 (591)
T 2v1x_A 234 FNRPNLYYEVRQKPSNTEDFIEDIVKLING----RYKGQSGIIYCFSQKDSEQVTVSLQNLG-IHAGAYHANLEPEDKTT 308 (591)
T ss_dssp CCCTTEEEEEEECCSSHHHHHHHHHHHHTT----TTTTCEEEEECSSHHHHHHHHHHHHHTT-CCEEEECTTSCHHHHHH
T ss_pred CCCcccEEEEEeCCCcHHHHHHHHHHHHHH----hccCCCeEEEeCcHHHHHHHHHHHHHCC-CCEEEecCCCCHHHHHH
Confidence 344555444333222 12344555555543 2367899999999999999999999987 89999999999999999
Q ss_pred HHHHHhcccccccccccccCCCCCcCCCCCCceeEEEEeCCCCCcCcCCCCCCCCCEEEEecCCCChHHHHHhhcccc--
Q 028124 96 ILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCL-- 173 (213)
Q Consensus 96 ~l~~Fr~g~~~~~~~~~~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~rGld~~~v~~VI~yd~P~~~~~yi~R~GR~~-- 173 (213)
++++|++|+ .+|||||++ +++|+|+|++++|||||+|.+.+.|+||+||+|
T Consensus 309 ~~~~F~~g~-----------------------~~VlVAT~a----~~~GID~p~V~~VI~~~~p~s~~~y~Qr~GRaGR~ 361 (591)
T 2v1x_A 309 VHRKWSANE-----------------------IQVVVATVA----FGMGIDKPDVRFVIHHSMSKSMENYYQESGRAGRD 361 (591)
T ss_dssp HHHHHHTTS-----------------------SSEEEECTT----SCTTCCCSCEEEEEESSCCSSHHHHHHHHTTSCTT
T ss_pred HHHHHHcCC-----------------------CeEEEEech----hhcCCCcccccEEEEeCCCCCHHHHHHHhccCCcC
Confidence 999999985 999999999 999999999999999999999999999999974
Q ss_pred CCCCeEEEEEeCchhHHHHHH
Q 028124 174 AADGSVINIVVGGEVVTLRSM 194 (213)
Q Consensus 174 ~~~g~~i~~~~~~e~~~~~~l 194 (213)
|.+|.|+.|+.+.|...+..+
T Consensus 362 G~~g~~i~l~~~~D~~~~~~~ 382 (591)
T 2v1x_A 362 DMKADCILYYGFGDIFRISSM 382 (591)
T ss_dssp SSCEEEEEEECHHHHHHHHHH
T ss_pred CCCceEEEEEChHHHHHHHHH
Confidence 667999999988777655544
No 25
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=99.88 E-value=2.3e-22 Score=179.20 Aligned_cols=145 Identities=15% Similarity=0.198 Sum_probs=122.1
Q ss_pred CCCCCCceEEEEEecCcchHHHHHHHHHHHhhcCCCCCCcEEEEeCchHHHHHHHHHHhccCCceEE-EecCCCCHHHHH
Q 028124 16 PSHFSQPRHFYVAVDRLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFS-SLHSDLAETERT 94 (213)
Q Consensus 16 ~~~~~~i~~~~~~~~~~~~K~~~L~~ll~~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~-~lhg~~~~~~R~ 94 (213)
.....++.|.|..+ + |.+.|.++++. .+.++||||+++..++.++..|...+ +.+. .+||+ +|.
T Consensus 225 ~~~~~~i~~~~~~~---~-~~~~l~~~l~~------~~~~~lVF~~~~~~~~~l~~~L~~~~-~~~~~~~h~~----~r~ 289 (414)
T 3oiy_A 225 VSVARNITHVRISS---R-SKEKLVELLEI------FRDGILIFAQTEEEGKELYEYLKRFK-FNVGETWSEF----EKN 289 (414)
T ss_dssp CCCCCSEEEEEESS---C-CHHHHHHHHHH------HCSSEEEEESSHHHHHHHHHHHHHTT-CCEEESSSCH----HHH
T ss_pred ccccccchheeecc---C-HHHHHHHHHHH------cCCCEEEEECCHHHHHHHHHHHHHcC-CceehhhcCc----chH
Confidence 34456788888765 2 67778888877 13799999999999999999999987 7888 99995 444
Q ss_pred HHHHHHhcccccccccccccCCCCCcCCCCCCceeEEEE----eCCCCCcCcCCCCCCC-CCEEEEecCC--CChHHHHH
Q 028124 95 LILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVV----TDACLPLLSSGESAIS-ARVLINYELP--TKKETYIR 167 (213)
Q Consensus 95 ~~l~~Fr~g~~~~~~~~~~~~~~~~~~~~~~~~~~iLV~----Td~~~~~~~rGld~~~-v~~VI~yd~P--~~~~~yi~ 167 (213)
+++|++|+ .++||| |++ +++|+|+|+ +++|||||+| .+..+|+|
T Consensus 290 --~~~f~~g~-----------------------~~vLvat~s~T~~----~~~GiDip~~v~~VI~~~~p~~~~~~~y~q 340 (414)
T 3oiy_A 290 --FEDFKVGK-----------------------INILIGVQAYYGK----LTRGVDLPERIKYVIFWGTPSGPDVYTYIQ 340 (414)
T ss_dssp --HHHHHTTS-----------------------CSEEEEECCTTCC----CCCCCCCTTTCCEEEEESCCTTTCHHHHHH
T ss_pred --HHHHhCCC-----------------------CeEEEEecCcCch----hhccCccccccCEEEEECCCCCCCHHHHHH
Confidence 99999985 999999 999 999999999 9999999999 99999999
Q ss_pred hhccccC------CCCeEEEEEeCchhHHHHHHHHHhc--ccccccC
Q 028124 168 RMTTCLA------ADGSVINIVVGGEVVTLRSMEESLG--LIVAEVP 206 (213)
Q Consensus 168 R~GR~~~------~~g~~i~~~~~~e~~~~~~le~~l~--~~~~~~~ 206 (213)
|+||+|+ +.|.++.|+ .+...++.+++.++ .++...+
T Consensus 341 r~GR~gR~g~~~~~~g~~i~~~--~~~~~~~~l~~~~~~~~~~~~~~ 385 (414)
T 3oiy_A 341 ASGRSSRILNGVLVKGVSVIFE--EDEEIFESLKTRLLLIAEEEIIE 385 (414)
T ss_dssp HHGGGCCEETTEECCEEEEEEC--CCHHHHHHHHHHHHHHHCCCEEE
T ss_pred HhCccccCCCCCCcceEEEEEE--ccHHHHHHHHHHhcccccccccc
Confidence 9999754 579999999 67788889999888 5554433
No 26
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=99.88 E-value=2.3e-23 Score=190.03 Aligned_cols=134 Identities=16% Similarity=0.199 Sum_probs=92.8
Q ss_pred chHHHHHHHHHHHhhcCCCCCCcEEEEeCchHHHHHHHHHHhccC---Cc--------eEEEecCCCCHHHHHHHHHHHh
Q 028124 33 QFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLA---DI--------SFSSLHSDLAETERTLILEEFR 101 (213)
Q Consensus 33 ~~K~~~L~~ll~~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~---~~--------~~~~lhg~~~~~~R~~~l~~Fr 101 (213)
..|+..|.++|..... ..+..++||||+++++++.+++.|...+ ++ ....+||+|++++|.+++++|+
T Consensus 370 ~~k~~~l~~~l~~~~~-~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~ 448 (555)
T 3tbk_A 370 NPKLRDLYLVLQEEYH-LKPETKTILFVKTRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFR 448 (555)
T ss_dssp CHHHHHHHHHHHHHHH-HCTTCCEEEECSSHHHHHHHHHHHHHCGGGTTCCEEECCC-----------------------
T ss_pred CHHHHHHHHHHHHHhc-cCCCceEEEEeCcHHHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHh
Confidence 4599999999977443 2456899999999999999999998753 12 3444556999999999999999
Q ss_pred c-ccccccccccccCCCCCcCCCCCCceeEEEEeCCCCCcCcCCCCCCCCCEEEEecCCCChHHHHHhhccccCCCCeEE
Q 028124 102 H-TAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAADGSVI 180 (213)
Q Consensus 102 ~-g~~~~~~~~~~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~rGld~~~v~~VI~yd~P~~~~~yi~R~GR~~~~~g~~i 180 (213)
+ |. +++||||++ +++|+|+|++++|||||+|+++.+|+||+||+..+.|.++
T Consensus 449 ~~g~-----------------------~~vLvaT~~----~~~GlDlp~v~~VI~~d~p~s~~~~~Qr~GRgR~~~g~~~ 501 (555)
T 3tbk_A 449 ASGD-----------------------NNILIATSV----ADEGIDIAECNLVILYEYVGNVIKMIQTRGRGRARDSKCF 501 (555)
T ss_dssp ---C-----------------------CSEEEECCC----TTCCEETTSCSEEEEESCCSSCCCEECSSCCCTTTSCEEE
T ss_pred cCCC-----------------------eeEEEEcch----hhcCCccccCCEEEEeCCCCCHHHHHHhcCcCcCCCceEE
Confidence 9 74 899999999 9999999999999999999999999999999323569999
Q ss_pred EEEeCchhHHHHHH
Q 028124 181 NIVVGGEVVTLRSM 194 (213)
Q Consensus 181 ~~~~~~e~~~~~~l 194 (213)
.|+++++......+
T Consensus 502 ~l~~~~~~~~~~~~ 515 (555)
T 3tbk_A 502 LLTSSADVIEKEKA 515 (555)
T ss_dssp EEESCHHHHHHHHH
T ss_pred EEEcCCCHHHHHHH
Confidence 99998766555544
No 27
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=99.87 E-value=4.4e-23 Score=190.09 Aligned_cols=160 Identities=21% Similarity=0.384 Sum_probs=116.3
Q ss_pred CCCCCceEEEEEecCcchHHHHHHHHHHHhhcCCCCCCcEEEEeCchHHHHHHHHHHhccCCceEEEecCCCCHHHHHHH
Q 028124 17 SHFSQPRHFYVAVDRLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLI 96 (213)
Q Consensus 17 ~~~~~i~~~~~~~~~~~~K~~~L~~ll~~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~lhg~~~~~~R~~~ 96 (213)
.....+.+.+..+.....|...+.++++. ....++||||+++..++.++..|...+ +.+..+||++++.+|..+
T Consensus 326 ~~~~~~~~~~~~~~~~~~k~~~l~~ll~~-----~~~~~~LVF~~s~~~a~~l~~~L~~~~-~~v~~~hg~~~~~~R~~i 399 (508)
T 3fho_A 326 LSVEGIKQLYMDCQSEEHKYNVLVELYGL-----LTIGQSIIFCKKKDTAEEIARRMTADG-HTVACLTGNLEGAQRDAI 399 (508)
T ss_dssp ----CCCCEEEEC--CHHHHHHHHHHHC--------CCCEEEBCSSTTTTTHHHHHHTTTT-CCCCEEC-----CTTGGG
T ss_pred CCcccceEEEEECCchHHHHHHHHHHHHh-----cCCCcEEEEECCHHHHHHHHHHHHhCC-CcEEEEeCCCCHHHHHHH
Confidence 34456788888887777799999988876 356899999999999999999999887 799999999999999999
Q ss_pred HHHHhcccccccccccccCCCCCcCCCCCCceeEEEEeCCCCCcCcCCCCCCCCCEEEEecCC------CChHHHHHhhc
Q 028124 97 LEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELP------TKKETYIRRMT 170 (213)
Q Consensus 97 l~~Fr~g~~~~~~~~~~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~rGld~~~v~~VI~yd~P------~~~~~yi~R~G 170 (213)
+++|++|+ .++||||++ +++|+|+|++++||+||+| .+...|+||+|
T Consensus 400 l~~f~~g~-----------------------~~VLVaT~~----l~~GiDip~v~~VI~~~~p~~~~~~~s~~~~~Qr~G 452 (508)
T 3fho_A 400 MDSFRVGT-----------------------SKVLVTTNV----IARGIDVSQVNLVVNYDMPLDQAGRPDPQTYLHRIG 452 (508)
T ss_dssp THHHHSSS-----------------------CCCCEECC---------CCCTTCCEEEC----CC-----CTHHHHHTTS
T ss_pred HHHHHCCC-----------------------CeEEEeCCh----hhcCCCccCCCEEEEECCCCcccCCCCHHHHHHHhh
Confidence 99999985 899999999 9999999999999999999 88999999999
Q ss_pred cc--cCCCCeEEEEEeC-chhHHHHHHHHHhcccccccCccc
Q 028124 171 TC--LAADGSVINIVVG-GEVVTLRSMEESLGLIVAEVPINI 209 (213)
Q Consensus 171 R~--~~~~g~~i~~~~~-~e~~~~~~le~~l~~~~~~~~~~~ 209 (213)
|+ .|+.|.++.|+.+ .+...+..+++.++..+.+++.+-
T Consensus 453 RagR~g~~g~~i~l~~~~~~~~~~~~i~~~~~~~i~~l~~~~ 494 (508)
T 3fho_A 453 RTGRFGRVGVSINFVHDKKSWEEMNAIQEYFQRPITRVPTDD 494 (508)
T ss_dssp CCC-----CEEEEEECTTTSSSSHHHHHHHSCCCCC------
T ss_pred hcCCCCCCcEEEEEEeChHHHHHHHHHHHHHCCCcccCCCcc
Confidence 97 4667999999974 577889999999999999887643
No 28
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=99.87 E-value=2.5e-22 Score=183.68 Aligned_cols=127 Identities=16% Similarity=0.218 Sum_probs=71.7
Q ss_pred chHHHHHHHHHHHhhcCCCCCCcEEEEeCchHHHHHHHHHHhcc------------CCceEEEecCCCCHHHHHHHHHHH
Q 028124 33 QFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNL------------ADISFSSLHSDLAETERTLILEEF 100 (213)
Q Consensus 33 ~~K~~~L~~ll~~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~------------~~~~~~~lhg~~~~~~R~~~l~~F 100 (213)
..|+..|.++|..... ..++.++||||+++++++.+++.|... | .....+||+|++++|.+++++|
T Consensus 371 ~~K~~~L~~~l~~~~~-~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~R~~~~~~F 448 (556)
T 4a2p_A 371 NPKLEELVCILDDAYR-YNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMG-RGRRDQTTGMTLPSQKGVLDAF 448 (556)
T ss_dssp CHHHHHHHHHHHHHHH-HCTTCCEEEEESSHHHHHHHHHHHTTCSGGGSCCEEC--------------------------
T ss_pred ChHHHHHHHHHHHHhc-CCCCceEEEEEccHHHHHHHHHHHHhCCCcceeeeeEEEc-cCCcccccccCHHHHHHHHHHh
Confidence 4599999999976432 145789999999999999999999765 3 3455667889999999999999
Q ss_pred hc-ccccccccccccCCCCCcCCCCCCceeEEEEeCCCCCcCcCCCCCCCCCEEEEecCCCChHHHHHhhccccC-CCCe
Q 028124 101 RH-TAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLA-ADGS 178 (213)
Q Consensus 101 r~-g~~~~~~~~~~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~rGld~~~v~~VI~yd~P~~~~~yi~R~GR~~~-~~g~ 178 (213)
++ |+ +++||||++ +++|+|+|++++|||||+|+++..|+||+|| |+ +.|.
T Consensus 449 ~~~g~-----------------------~~vLvaT~~----~~~GiDip~v~~VI~~d~p~s~~~~~Qr~GR-gR~~~g~ 500 (556)
T 4a2p_A 449 KTSKD-----------------------NRLLIATSV----ADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRAAGSK 500 (556)
T ss_dssp ----------------------------CCEEEEEC---------------CEEEEETCCSCHHHHHHC---------CC
T ss_pred cccCc-----------------------eEEEEEcCc----hhcCCCchhCCEEEEeCCCCCHHHHHHhcCC-CCCCCce
Confidence 99 74 999999999 9999999999999999999999999999999 43 4589
Q ss_pred EEEEEeCchhH
Q 028124 179 VINIVVGGEVV 189 (213)
Q Consensus 179 ~i~~~~~~e~~ 189 (213)
++.|++.++..
T Consensus 501 ~~~l~~~~~~~ 511 (556)
T 4a2p_A 501 CILVTSKTEVV 511 (556)
T ss_dssp EEEEESCHHHH
T ss_pred EEEEEeCcchH
Confidence 99999886553
No 29
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=99.87 E-value=1.1e-22 Score=192.34 Aligned_cols=146 Identities=15% Similarity=0.188 Sum_probs=91.3
Q ss_pred cchHHHHHHHHHHHhhcCCCCCCcEEEEeCchHHHHHHHHHHhccCC---ceEEEe--------cCCCCHHHHHHHHHHH
Q 028124 32 LQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLAD---ISFSSL--------HSDLAETERTLILEEF 100 (213)
Q Consensus 32 ~~~K~~~L~~ll~~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~---~~~~~l--------hg~~~~~~R~~~l~~F 100 (213)
...|+..|.+++..... ..++.++||||+++++++.|++.|...+. +.+..+ ||+|++++|.+++++|
T Consensus 378 ~~~k~~~L~~ll~~~~~-~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F 456 (696)
T 2ykg_A 378 ENPKLEDLCFILQEEYH-LNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAF 456 (696)
T ss_dssp CCHHHHHHHHHHHHHHT-TCTTCCEEEECSCHHHHHHHHHHHHHCTTCCSCCEEC-------------------------
T ss_pred CCHHHHHHHHHHHHHhc-cCCCCcEEEEeCcHHHHHHHHHHHHhCCCccccceeEEEccCCCccccCCCHHHHHHHHHHH
Confidence 34599999999987432 23568999999999999999999988752 678888 5599999999999999
Q ss_pred hc-ccccccccccccCCCCCcCCCCCCceeEEEEeCCCCCcCcCCCCCCCCCEEEEecCCCChHHHHHhhccccCC-CCe
Q 028124 101 RH-TAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAA-DGS 178 (213)
Q Consensus 101 r~-g~~~~~~~~~~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~rGld~~~v~~VI~yd~P~~~~~yi~R~GR~~~~-~g~ 178 (213)
++ |+ .++||||++ +++|+|+|++++|||||+|+++++|+||+|| |+. .|.
T Consensus 457 ~~~g~-----------------------~~vLVaT~v----~~~GiDip~v~~VI~~d~p~s~~~~~Qr~GR-GR~~~g~ 508 (696)
T 2ykg_A 457 KASGD-----------------------HNILIATSV----ADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRARGSK 508 (696)
T ss_dssp ----C-----------------------CSCSEEEES----SCCC---CCCSEEEEESCC--CCCC----------CCCE
T ss_pred HhcCC-----------------------ccEEEEech----hhcCCcCccCCEEEEeCCCCCHHHHHHhhcc-CcCCCce
Confidence 98 85 999999999 9999999999999999999999999999999 654 588
Q ss_pred EEEEEeCchhHHHHHH----HHHhcccccccC
Q 028124 179 VINIVVGGEVVTLRSM----EESLGLIVAEVP 206 (213)
Q Consensus 179 ~i~~~~~~e~~~~~~l----e~~l~~~~~~~~ 206 (213)
++.++..++......+ |+.++..+.+++
T Consensus 509 ~~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~ 540 (696)
T 2ykg_A 509 CFLLTSNAGVIEKEQINMYKEKMMNDSILRLQ 540 (696)
T ss_dssp EEEEESCHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred EEEEecCCCHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999988777555555 556655555544
No 30
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=99.87 E-value=9.4e-22 Score=168.72 Aligned_cols=141 Identities=21% Similarity=0.317 Sum_probs=117.2
Q ss_pred CCCceEEEEEecCcchHHHHHHHHHHHhhcCCCCCCcEEEEeCchHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHH
Q 028124 19 FSQPRHFYVAVDRLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILE 98 (213)
Q Consensus 19 ~~~i~~~~~~~~~~~~K~~~L~~ll~~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~lhg~~~~~~R~~~l~ 98 (213)
..++.+.+..+.... +. ..+.+.. ....++||||++++.++.+++.|. .+..+||+++..+|.++++
T Consensus 194 ~~~~~~~~~~~~~~~-~~--~~~~~~~-----~~~~~~lvf~~~~~~~~~l~~~l~-----~~~~~~~~~~~~~r~~~~~ 260 (337)
T 2z0m_A 194 LANVEHKFVHVKDDW-RS--KVQALRE-----NKDKGVIVFVRTRNRVAKLVRLFD-----NAIELRGDLPQSVRNRNID 260 (337)
T ss_dssp GGGEEEEEEECSSSS-HH--HHHHHHT-----CCCSSEEEECSCHHHHHHHHTTCT-----TEEEECTTSCHHHHHHHHH
T ss_pred cCCceEEEEEeChHH-HH--HHHHHHh-----CCCCcEEEEEcCHHHHHHHHHHhh-----hhhhhcCCCCHHHHHHHHH
Confidence 456778887777654 22 2244443 467899999999999999999885 5788999999999999999
Q ss_pred HHhcccccccccccccCCCCCcCCCCCCceeEEEEeCCCCCcCcCCCCCCCCCEEEEecCCCChHHHHHhhccc--cCCC
Q 028124 99 EFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTC--LAAD 176 (213)
Q Consensus 99 ~Fr~g~~~~~~~~~~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~rGld~~~v~~VI~yd~P~~~~~yi~R~GR~--~~~~ 176 (213)
+|++|+ .++||||++ +++|+|+|++++||+|++|++...|+||+||+ .|+.
T Consensus 261 ~f~~~~-----------------------~~vlv~T~~----~~~Gid~~~~~~Vi~~~~~~s~~~~~Q~~GR~gR~g~~ 313 (337)
T 2z0m_A 261 AFREGE-----------------------YDMLITTDV----ASRGLDIPLVEKVINFDAPQDLRTYIHRIGRTGRMGRK 313 (337)
T ss_dssp HHHTTS-----------------------CSEEEECHH----HHTTCCCCCBSEEEESSCCSSHHHHHHHHTTBCGGGCC
T ss_pred HHHcCC-----------------------CcEEEEcCc----cccCCCccCCCEEEEecCCCCHHHhhHhcCccccCCCC
Confidence 999985 999999999 99999999999999999999999999999997 4678
Q ss_pred CeEEEEEeCchhHHHHHHHHHhcc
Q 028124 177 GSVINIVVGGEVVTLRSMEESLGL 200 (213)
Q Consensus 177 g~~i~~~~~~e~~~~~~le~~l~~ 200 (213)
|.++.++. .+...++++++.++.
T Consensus 314 g~~~~~~~-~~~~~~~~i~~~~~~ 336 (337)
T 2z0m_A 314 GEAITFIL-NEYWLEKEVKKVSQK 336 (337)
T ss_dssp EEEEEEES-SCHHHHHHHC-----
T ss_pred ceEEEEEe-CcHHHHHHHHHHhcc
Confidence 99999999 888888888887654
No 31
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=99.86 E-value=2.8e-22 Score=189.61 Aligned_cols=122 Identities=16% Similarity=0.232 Sum_probs=100.7
Q ss_pred hHHHHHHHHHHHhhcCCCC-CCcEEEEeCchHHHHHHHHHHhcc------CCceEEEecCC--------CCHHHHHHHHH
Q 028124 34 FKMETLVELLHLVVAGRRP-GLPMIVCCSSRDELDAVCSAVSNL------ADISFSSLHSD--------LAETERTLILE 98 (213)
Q Consensus 34 ~K~~~L~~ll~~~~~~~~~-~~~~IIF~~~~~~~~~l~~~L~~~------~~~~~~~lhg~--------~~~~~R~~~l~ 98 (213)
.|+..|.++|..... ..+ +.++||||+++++++.|++.|... | +.+..+||+ |++.+|.++++
T Consensus 381 ~k~~~L~~~L~~~~~-~~~~~~~~IVF~~s~~~~~~l~~~L~~~~~l~~~g-~~~~~lhg~~~~~~~~~~~~~eR~~~~~ 458 (699)
T 4gl2_A 381 EKLTKLRNTIMEQYT-RTEESARGIIFTKTRQSAYALSQWITENEKFAEVG-VKAHHLIGAGHSSEFKPMTQNEQKEVIS 458 (699)
T ss_dssp -CSSCSHHHHHHHHH-HSSSCCCEEEECSCHHHHHHHHHHHHSSCSCC------CEECCCSCCCTTCCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh-cCCCCCcEEEEECcHHHHHHHHHHHHhCccccccC-cceEEEECCCCccCCCCCCHHHHHHHHH
Confidence 366666677655322 123 789999999999999999999876 5 899999999 99999999999
Q ss_pred HHhcccccccccccccCCCCCcCCCCCCceeEEEEeCCCCCcCcCCCCCCCCCEEEEecCCCChHHHHHhhccccCCCCe
Q 028124 99 EFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAADGS 178 (213)
Q Consensus 99 ~Fr~g~~~~~~~~~~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~rGld~~~v~~VI~yd~P~~~~~yi~R~GR~~~~~g~ 178 (213)
+|++|+ .+|||||++ +++|+|+|++++|||||+|+|+.+|+||+||+ |+.|.
T Consensus 459 ~F~~g~-----------------------~~VLVaT~~----~~~GIDip~v~~VI~~d~p~s~~~~~Qr~GRA-rr~g~ 510 (699)
T 4gl2_A 459 KFRTGK-----------------------INLLIATTV----AEEGLDIKECNIVIRYGLVTNEIAMVQARGRA-RADES 510 (699)
T ss_dssp HHCC--------------------------CCSEEECS----CCTTSCCCSCCCCEEESCCCCHHHHHHHHTTS-CSSSC
T ss_pred HHhcCC-----------------------CcEEEEccc----cccCCccccCCEEEEeCCCCCHHHHHHHcCCC-CCCCc
Confidence 999985 999999999 99999999999999999999999999999994 66677
Q ss_pred EEEEEeC
Q 028124 179 VINIVVG 185 (213)
Q Consensus 179 ~i~~~~~ 185 (213)
++.++..
T Consensus 511 ~~~l~~~ 517 (699)
T 4gl2_A 511 TYVLVAH 517 (699)
T ss_dssp EEEEEEE
T ss_pred eEEEEEe
Confidence 7777754
No 32
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=99.85 E-value=3.3e-21 Score=171.12 Aligned_cols=129 Identities=21% Similarity=0.265 Sum_probs=111.5
Q ss_pred CcchHHHHHHHHHHHhhcCCCCCCcEEEEeCchHHHHHHHHHHhccCCceEEEecC--------CCCHHHHHHHHHHHhc
Q 028124 31 RLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHS--------DLAETERTLILEEFRH 102 (213)
Q Consensus 31 ~~~~K~~~L~~ll~~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~lhg--------~~~~~~R~~~l~~Fr~ 102 (213)
....|+..|.++|..... ..++.++||||+++..++.+++.|...+ +.+..+|| +|+..+|.+++++|++
T Consensus 340 ~~~~k~~~l~~~l~~~~~-~~~~~k~lVF~~~~~~~~~l~~~L~~~~-~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~ 417 (494)
T 1wp9_A 340 LDHPKMDKLKEIIREQLQ-RKQNSKIIVFTNYRETAKKIVNELVKDG-IKAKRFVGQASKENDRGLSQREQKLILDEFAR 417 (494)
T ss_dssp CSCHHHHHHHHHHHHHHH-HCTTCCEEEECSCHHHHHHHHHHHHHTT-CCEEEECCSSCC-------CCHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHhc-cCCCCeEEEEEccHHHHHHHHHHHHHcC-CCcEEEeccccccccccCCHHHHHHHHHHHhc
Confidence 344599999999987432 1357899999999999999999999987 89999999 9999999999999999
Q ss_pred ccccccccccccCCCCCcCCCCCCceeEEEEeCCCCCcCcCCCCCCCCCEEEEecCCCChHHHHHhhccccCC-CCeEEE
Q 028124 103 TAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAA-DGSVIN 181 (213)
Q Consensus 103 g~~~~~~~~~~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~rGld~~~v~~VI~yd~P~~~~~yi~R~GR~~~~-~g~~i~ 181 (213)
|. .++||+|++ +++|+|+|++++||+||+|+++..|+||+||+++. .|.++.
T Consensus 418 ~~-----------------------~~vLv~T~~----~~~Gldl~~~~~Vi~~d~~~~~~~~~Qr~GR~~R~g~g~~~~ 470 (494)
T 1wp9_A 418 GE-----------------------FNVLVATSV----GEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGRHMPGRVII 470 (494)
T ss_dssp TS-----------------------CSEEEECGG----GGGGGGSTTCCEEEESSCCHHHHHHHHHHTTSCSCCCSEEEE
T ss_pred CC-----------------------ceEEEECCc----cccCCCchhCCEEEEeCCCCCHHHHHHHHhhccCCCCceEEE
Confidence 84 899999999 99999999999999999999999999999997432 299999
Q ss_pred EEeCchh
Q 028124 182 IVVGGEV 188 (213)
Q Consensus 182 ~~~~~e~ 188 (213)
|+.+++.
T Consensus 471 l~~~~t~ 477 (494)
T 1wp9_A 471 LMAKGTR 477 (494)
T ss_dssp EEETTSH
T ss_pred EEecCCH
Confidence 9998744
No 33
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.85 E-value=1.4e-20 Score=179.14 Aligned_cols=144 Identities=15% Similarity=0.211 Sum_probs=118.2
Q ss_pred HHHHHHHHHHHhhcCCCCCCcEEEEeCchHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhccccccccccccc
Q 028124 35 KMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQ 114 (213)
Q Consensus 35 K~~~L~~ll~~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~~~~~~~~~ 114 (213)
+...|...|.... ..+.++||||+|+..++.|++.|...| +.+..+||++++.+|.+++++|+.|.
T Consensus 430 ~~~~Ll~~l~~~~---~~~~~vlVf~~t~~~ae~L~~~L~~~g-i~~~~lh~~~~~~~R~~~l~~f~~g~---------- 495 (661)
T 2d7d_A 430 QIDDLIGEIQARI---ERNERVLVTTLTKKMSEDLTDYLKEIG-IKVNYLHSEIKTLERIEIIRDLRLGK---------- 495 (661)
T ss_dssp HHHHHHHHHHHHH---TTTCEEEEECSSHHHHHHHHHHHHHTT-CCEEEECTTCCHHHHHHHHHHHHHTS----------
T ss_pred hHHHHHHHHHHHH---hcCCeEEEEECCHHHHHHHHHHHHhcC-CCeEEEeCCCCHHHHHHHHHHHhcCC----------
Confidence 5555555554422 246799999999999999999999987 89999999999999999999999985
Q ss_pred CCCCCcCCCCCCceeEEEEeCCCCCcCcCCCCCCCCCEEEEecC-----CCChHHHHHhhccccC-CCCeEEEEEeCchh
Q 028124 115 SGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYEL-----PTKKETYIRRMTTCLA-ADGSVINIVVGGEV 188 (213)
Q Consensus 115 ~~~~~~~~~~~~~~~iLV~Td~~~~~~~rGld~~~v~~VI~yd~-----P~~~~~yi~R~GR~~~-~~g~~i~~~~~~e~ 188 (213)
.++||+|++ +++|+|+|++++||+||. |.+.++|+||+||+|+ ..|.|++|+.+.+.
T Consensus 496 -------------~~VLVaT~~----l~~GlDip~v~lVi~~d~d~~G~p~s~~~~iQr~GRagR~~~G~~i~~~~~~~~ 558 (661)
T 2d7d_A 496 -------------YDVLVGINL----LREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNAEGRVIMYADKITK 558 (661)
T ss_dssp -------------CSEEEESCC----CSTTCCCTTEEEEEETTTTCCTTTTSHHHHHHHHHTTTTSTTCEEEEECSSCCH
T ss_pred -------------eEEEEecch----hhCCcccCCCCEEEEeCcccccCCCCHHHHHHHhCcccCCCCCEEEEEEeCCCH
Confidence 999999999 999999999999999997 9999999999999865 46999999987654
Q ss_pred HH---------HHHHHHHhcccccccCccc
Q 028124 189 VT---------LRSMEESLGLIVAEVPINI 209 (213)
Q Consensus 189 ~~---------~~~le~~l~~~~~~~~~~~ 209 (213)
.. .+.++..++.+....|.++
T Consensus 559 ~~~~~i~~~~~~r~i~~~~~~~~~~~p~~~ 588 (661)
T 2d7d_A 559 SMEIAINETKRRREQQERFNEEHGITPKTI 588 (661)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHhhhhcCCCCCch
Confidence 33 3444555555555445443
No 34
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.84 E-value=2.8e-20 Score=177.05 Aligned_cols=129 Identities=14% Similarity=0.141 Sum_probs=110.5
Q ss_pred HHHHHHHHHHHhhcCCCCCCcEEEEeCchHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhccccccccccccc
Q 028124 35 KMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQ 114 (213)
Q Consensus 35 K~~~L~~ll~~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~~~~~~~~~ 114 (213)
+...|...|.... ..+.++||||+|+..++.|++.|...| +.+..+||+|++.+|.+++++|+.|.
T Consensus 424 ~~~~Ll~~l~~~~---~~~~~vlVf~~t~~~ae~L~~~L~~~g-i~~~~lh~~~~~~~R~~~~~~f~~g~---------- 489 (664)
T 1c4o_A 424 QILDLMEGIRERA---ARGERTLVTVLTVRMAEELTSFLVEHG-IRARYLHHELDAFKRQALIRDLRLGH---------- 489 (664)
T ss_dssp HHHHHHHHHHHHH---HTTCEEEEECSSHHHHHHHHHHHHHTT-CCEEEECTTCCHHHHHHHHHHHHTTS----------
T ss_pred hHHHHHHHHHHHH---hcCCEEEEEECCHHHHHHHHHHHHhcC-CCceeecCCCCHHHHHHHHHHhhcCC----------
Confidence 5565655554422 246799999999999999999999987 89999999999999999999999985
Q ss_pred CCCCCcCCCCCCceeEEEEeCCCCCcCcCCCCCCCCCEEEEecC-----CCChHHHHHhhccccCC-CCeEEEEEeCchh
Q 028124 115 SGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYEL-----PTKKETYIRRMTTCLAA-DGSVINIVVGGEV 188 (213)
Q Consensus 115 ~~~~~~~~~~~~~~~iLV~Td~~~~~~~rGld~~~v~~VI~yd~-----P~~~~~yi~R~GR~~~~-~g~~i~~~~~~e~ 188 (213)
.++||+|++ +++|+|+|++++||+||. |++..+|+||+||+|+. .|.|++++...+.
T Consensus 490 -------------~~VLvaT~~----l~~GlDip~v~lVI~~d~d~~G~p~s~~~~iQr~GRagR~~~G~~i~~~~~~~~ 552 (664)
T 1c4o_A 490 -------------YDCLVGINL----LREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNARGEVWLYADRVSE 552 (664)
T ss_dssp -------------CSEEEESCC----CCTTCCCTTEEEEEETTTTSCSGGGSHHHHHHHHGGGTTSTTCEEEEECSSCCH
T ss_pred -------------ceEEEccCh----hhcCccCCCCCEEEEeCCcccCCCCCHHHHHHHHCccCcCCCCEEEEEEcCCCH
Confidence 999999999 999999999999999997 99999999999998643 6999999987655
Q ss_pred HHHHHH
Q 028124 189 VTLRSM 194 (213)
Q Consensus 189 ~~~~~l 194 (213)
...+.+
T Consensus 553 ~~~~~i 558 (664)
T 1c4o_A 553 AMQRAI 558 (664)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 443333
No 35
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=99.84 E-value=2.4e-20 Score=159.79 Aligned_cols=136 Identities=14% Similarity=0.115 Sum_probs=106.7
Q ss_pred cchHHHHHHHHHHHhhcCCCCCCcEEEEeCchHHHHHHHHHHhcc-CCceEEEecCCCCHHHHHHHHHHHhccccccccc
Q 028124 32 LQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNL-ADISFSSLHSDLAETERTLILEEFRHTAMKWNQK 110 (213)
Q Consensus 32 ~~~K~~~L~~ll~~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~-~~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~~~~~ 110 (213)
...|+..|.++|+.+.. .+.++||||++...++.|...|... | +.+..+||++++.+|..++++|+++.
T Consensus 94 ~s~K~~~L~~ll~~~~~---~~~kvlIFs~~~~~~~~l~~~L~~~~g-~~~~~l~G~~~~~~R~~~i~~F~~~~------ 163 (271)
T 1z5z_A 94 RSGKMIRTMEIIEEALD---EGDKIAIFTQFVDMGKIIRNIIEKELN-TEVPFLYGELSKKERDDIISKFQNNP------ 163 (271)
T ss_dssp TCHHHHHHHHHHHHHHH---TTCCEEEEESCHHHHHHHHHHHHHHHC-SCCCEECTTSCHHHHHHHHHHHHHCT------
T ss_pred cCHHHHHHHHHHHHHHh---CCCeEEEEeccHHHHHHHHHHHHHhcC-CcEEEEECCCCHHHHHHHHHHhcCCC------
Confidence 34599999999987543 5689999999999999999999875 6 78999999999999999999999973
Q ss_pred ccccCCCCCcCCCCCCcee-EEEEeCCCCCcCcCCCCCCCCCEEEEecCCCChHHHHHhhccc--cCCC--CeEEEEEeC
Q 028124 111 VTEQSGDESETGKDEHKSH-MIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTC--LAAD--GSVINIVVG 185 (213)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~-iLV~Td~~~~~~~rGld~~~v~~VI~yd~P~~~~~yi~R~GR~--~~~~--g~~i~~~~~ 185 (213)
..+ +|++|++ +++|+|++.+++||+||+||++..|.||+||+ .|+. ..++.|++.
T Consensus 164 ----------------~~~v~L~st~~----~g~Glnl~~a~~VI~~d~~wnp~~~~Q~~gR~~R~Gq~~~v~v~~li~~ 223 (271)
T 1z5z_A 164 ----------------SVKFIVLSVKA----GGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISV 223 (271)
T ss_dssp ----------------TCCEEEEECCT----TCCCCCCTTCSEEEECSCCSCTTTC--------------CCEEEEEEET
T ss_pred ----------------CCCEEEEehhh----hcCCcCcccCCEEEEECCCCChhHHHHHHHhccccCCCCceEEEEEeeC
Confidence 355 7999999 99999999999999999999999999999996 3444 456888887
Q ss_pred c--hhHHHHHHHHH
Q 028124 186 G--EVVTLRSMEES 197 (213)
Q Consensus 186 ~--e~~~~~~le~~ 197 (213)
+ |...+..++..
T Consensus 224 ~TiEe~i~~~~~~K 237 (271)
T 1z5z_A 224 GTLEEKIDQLLAFK 237 (271)
T ss_dssp TSHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHH
Confidence 6 44555555443
No 36
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=99.84 E-value=1.1e-20 Score=182.50 Aligned_cols=126 Identities=15% Similarity=0.211 Sum_probs=76.3
Q ss_pred chHHHHHHHHHHHhhcCCCCCCcEEEEeCchHHHHHHHHHHhcc------------CCceEEEecCCCCHHHHHHHHHHH
Q 028124 33 QFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNL------------ADISFSSLHSDLAETERTLILEEF 100 (213)
Q Consensus 33 ~~K~~~L~~ll~~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~------------~~~~~~~lhg~~~~~~R~~~l~~F 100 (213)
..|+..|.++|..... ..++.++||||+++++++.|++.|... | .....+||+|++.+|.+++++|
T Consensus 612 ~~K~~~L~~lL~~~~~-~~~~~kvLIF~~~~~~~~~L~~~L~~~~~~~~~~~~~l~G-~~~~~~hg~~~~~eR~~~l~~F 689 (797)
T 4a2q_A 612 NPKLEELVCILDDAYR-YNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMG-RGRRDQTTGMTLPSQKGVLDAF 689 (797)
T ss_dssp CHHHHHHHHHHHHHHH-HCSSCCEEEEESSHHHHHHHHHHHHTCSTTCSCCCEEC-------------------------
T ss_pred ChHHHHHHHHHHHHhc-cCCCCeEEEEECcHHHHHHHHHHHHhCcccccccceEEEe-cCCcccCCCCCHHHHHHHHHHh
Confidence 4599999999976332 245689999999999999999999764 3 3556678899999999999999
Q ss_pred hc-ccccccccccccCCCCCcCCCCCCceeEEEEeCCCCCcCcCCCCCCCCCEEEEecCCCChHHHHHhhccccC-CCCe
Q 028124 101 RH-TAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLA-ADGS 178 (213)
Q Consensus 101 r~-g~~~~~~~~~~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~rGld~~~v~~VI~yd~P~~~~~yi~R~GR~~~-~~g~ 178 (213)
++ |. +++||||++ +++|+|+|+|++|||||+|+++..|+||+|| |+ +.|.
T Consensus 690 ~~~g~-----------------------~~vLVaT~~----~~~GIDlp~v~~VI~yd~p~s~~~~iQr~GR-GR~~~g~ 741 (797)
T 4a2q_A 690 KTSKD-----------------------NRLLIATSV----ADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRAAGSK 741 (797)
T ss_dssp ----C-----------------------CSEEEEECC-----------CCCSEEEEESCCSCHHHHHTC--------CCC
T ss_pred hccCC-----------------------ceEEEEcCc----hhcCCCchhCCEEEEeCCCCCHHHHHHhcCC-CCCCCce
Confidence 99 74 999999999 9999999999999999999999999999999 43 4599
Q ss_pred EEEEEeCchh
Q 028124 179 VINIVVGGEV 188 (213)
Q Consensus 179 ~i~~~~~~e~ 188 (213)
|+.|++.++.
T Consensus 742 ~i~l~~~~~~ 751 (797)
T 4a2q_A 742 CILVTSKTEV 751 (797)
T ss_dssp EEEEECCHHH
T ss_pred EEEEEeCCcH
Confidence 9999988654
No 37
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=99.83 E-value=1.2e-20 Score=182.19 Aligned_cols=129 Identities=12% Similarity=0.103 Sum_probs=109.8
Q ss_pred EEEecCcchHHHHHHHHHHHhhcCCCCCCcEEEEeCchHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhcccc
Q 028124 26 YVAVDRLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAM 105 (213)
Q Consensus 26 ~~~~~~~~~K~~~L~~ll~~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~lhg~~~~~~R~~~l~~Fr~g~~ 105 (213)
++++.. ..|+..|.+++.... ..++++||||+|+..++.|+..|...| +.+..+||++.+.+|..+.+.|+.
T Consensus 409 ~v~~~~-~~K~~al~~~i~~~~---~~~~pvLVft~s~~~se~Ls~~L~~~g-i~~~vLhg~~~~rEr~ii~~ag~~--- 480 (844)
T 1tf5_A 409 LIYRTM-EGKFKAVAEDVAQRY---MTGQPVLVGTVAVETSELISKLLKNKG-IPHQVLNAKNHEREAQIIEEAGQK--- 480 (844)
T ss_dssp EEESSH-HHHHHHHHHHHHHHH---HHTCCEEEEESCHHHHHHHHHHHHTTT-CCCEEECSSCHHHHHHHHTTTTST---
T ss_pred EEEeCH-HHHHHHHHHHHHHHH---hcCCcEEEEECCHHHHHHHHHHHHHCC-CCEEEeeCCccHHHHHHHHHcCCC---
Confidence 444544 459999999886521 146789999999999999999999998 899999999988888766655655
Q ss_pred cccccccccCCCCCcCCCCCCceeEEEEeCCCCCcCcCCCCCC--------CCCEEEEecCCCChHHHHHhhccc--cCC
Q 028124 106 KWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAI--------SARVLINYELPTKKETYIRRMTTC--LAA 175 (213)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~rGld~~--------~v~~VI~yd~P~~~~~yi~R~GR~--~~~ 175 (213)
..|+||||+ ++||+|++ ++.+|||||+|.+.+.|+||+||+ .|.
T Consensus 481 ----------------------g~VlIATdm----AgRG~DI~l~~~V~~~ggl~VIn~d~p~s~r~y~hr~GRTGRqG~ 534 (844)
T 1tf5_A 481 ----------------------GAVTIATNM----AGRGTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRGRSGRQGD 534 (844)
T ss_dssp ----------------------TCEEEEETT----SSTTCCCCCCTTSGGGTSEEEEESSCCSSHHHHHHHHTTSSGGGC
T ss_pred ----------------------CeEEEeCCc----cccCcCccccchhhhcCCcEEEEecCCCCHHHHHhhcCccccCCC
Confidence 459999999 99999999 788999999999999999999997 578
Q ss_pred CCeEEEEEeCchh
Q 028124 176 DGSVINIVVGGEV 188 (213)
Q Consensus 176 ~g~~i~~~~~~e~ 188 (213)
+|.+++|++.+|.
T Consensus 535 ~G~s~~~vs~eD~ 547 (844)
T 1tf5_A 535 PGITQFYLSMEDE 547 (844)
T ss_dssp CEEEEEEEETTSS
T ss_pred CCeEEEEecHHHH
Confidence 8999999997663
No 38
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=99.82 E-value=2.2e-20 Score=183.67 Aligned_cols=126 Identities=15% Similarity=0.211 Sum_probs=77.6
Q ss_pred chHHHHHHHHHHHhhcCCCCCCcEEEEeCchHHHHHHHHHHhcc------------CCceEEEecCCCCHHHHHHHHHHH
Q 028124 33 QFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNL------------ADISFSSLHSDLAETERTLILEEF 100 (213)
Q Consensus 33 ~~K~~~L~~ll~~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~------------~~~~~~~lhg~~~~~~R~~~l~~F 100 (213)
..|+..|.++|..... ..++.++||||+++++++.|++.|... | .....+||+|++.+|.+++++|
T Consensus 612 ~~K~~~L~~lL~~~~~-~~~~~rvLIF~~t~~~ae~L~~~L~~~~~l~~ik~~~l~G-~~~~~~hg~m~~~eR~~il~~F 689 (936)
T 4a2w_A 612 NPKLEELVCILDDAYR-YNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMG-RGRRDQTTGMTLPSQKGVLDAF 689 (936)
T ss_dssp CHHHHHHHHHHHHTTT-SCTTCCEEEEESSHHHHHHHHHHHHHCSTTSSCCCEEC-------------------------
T ss_pred CHHHHHHHHHHHHHhc-cCCCCeEEEEeCCHHHHHHHHHHHhhCccccccceeEEec-CCCcccCCCCCHHHHHHHHHHh
Confidence 4599999999987432 245789999999999999999999875 3 3456678999999999999999
Q ss_pred hc-ccccccccccccCCCCCcCCCCCCceeEEEEeCCCCCcCcCCCCCCCCCEEEEecCCCChHHHHHhhccccC-CCCe
Q 028124 101 RH-TAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLA-ADGS 178 (213)
Q Consensus 101 r~-g~~~~~~~~~~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~rGld~~~v~~VI~yd~P~~~~~yi~R~GR~~~-~~g~ 178 (213)
++ |. +++||||++ +++|+|+|+|++|||||+|+++..|+||+|| |+ +.|.
T Consensus 690 r~~g~-----------------------~~VLVaT~~----~~eGIDlp~v~~VI~yD~p~s~~~~iQr~GR-GR~~~g~ 741 (936)
T 4a2w_A 690 KTSKD-----------------------NRLLIATSV----ADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRAAGSK 741 (936)
T ss_dssp ----C-----------------------CSEEEEECC----------CCCCSEEEEESCCSCSHHHHCC--------CCC
T ss_pred hccCC-----------------------eeEEEEeCc----hhcCCcchhCCEEEEeCCCCCHHHHHHhcCC-CCCCCCE
Confidence 99 74 999999999 9999999999999999999999999999999 43 3589
Q ss_pred EEEEEeCchh
Q 028124 179 VINIVVGGEV 188 (213)
Q Consensus 179 ~i~~~~~~e~ 188 (213)
++.|+..++.
T Consensus 742 vi~Li~~~t~ 751 (936)
T 4a2w_A 742 CILVTSKTEV 751 (936)
T ss_dssp EEEEESCHHH
T ss_pred EEEEEeCCCH
Confidence 9999987654
No 39
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=99.80 E-value=3e-19 Score=176.17 Aligned_cols=121 Identities=14% Similarity=0.205 Sum_probs=107.2
Q ss_pred cchHHHHHHHHHHHhhcCCCCCCcEEEEeCchHHHHHHHHHHhc-cCCceEEEecCCCCHHHHHHHHHHHhccccccccc
Q 028124 32 LQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSN-LADISFSSLHSDLAETERTLILEEFRHTAMKWNQK 110 (213)
Q Consensus 32 ~~~K~~~L~~ll~~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~-~~~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~~~~~ 110 (213)
...|+..|.++++. .++.++||||+++.+++.++..|.. .| +.+..+||+|++.+|..++++|++|+
T Consensus 487 ~~~K~~~L~~ll~~-----~~~~k~iVF~~~~~~~~~l~~~L~~~~g-~~~~~lhG~~~~~~R~~~l~~F~~g~------ 554 (968)
T 3dmq_A 487 FDPRVEWLMGYLTS-----HRSQKVLVICAKAATALQLEQVLREREG-IRAAVFHEGMSIIERDRAAAWFAEED------ 554 (968)
T ss_dssp TSHHHHHHHHHHHH-----TSSSCCCEECSSTHHHHHHHHHHHTTTC-CCEEEECTTSCTTHHHHHHHHHHSTT------
T ss_pred ccHHHHHHHHHHHh-----CCCCCEEEEeCcHHHHHHHHHHHHHHcC-CcEEEEeCCCCHHHHHHHHHHHhCCC------
Confidence 34599999999987 4678999999999999999999995 46 89999999999999999999999973
Q ss_pred ccccCCCCCcCCCCCCceeEEEEeCCCCCcCcCCCCCCCCCEEEEecCCCChHHHHHhhccc--cCCCCeEEEEE
Q 028124 111 VTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTC--LAADGSVINIV 183 (213)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~rGld~~~v~~VI~yd~P~~~~~yi~R~GR~--~~~~g~~i~~~ 183 (213)
+.+++||||++ +++|+|+|++++||+||+|+++..|+||+||+ .|+.|.|+.+.
T Consensus 555 ---------------~~~~vLvaT~v----~~~GlDl~~~~~VI~~d~p~~~~~~~Q~~GR~~R~Gq~~~v~v~~ 610 (968)
T 3dmq_A 555 ---------------TGAQVLLCSEI----GSEGRNFQFASHMVMFDLPFNPDLLEQRIGRLDRIGQAHDIQIHV 610 (968)
T ss_dssp ---------------SSCEEEECSCC----TTCSSCCTTCCEEECSSCCSSHHHHHHHHHTTSCSSSCSCCEEEE
T ss_pred ---------------CcccEEEecch----hhcCCCcccCcEEEEecCCCCHHHHHHHhhccccCCCCceEEEEE
Confidence 24899999999 99999999999999999999999999999996 56666444443
No 40
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=99.80 E-value=4.6e-19 Score=168.90 Aligned_cols=128 Identities=16% Similarity=0.169 Sum_probs=107.6
Q ss_pred EEecCcchHHHHHHHHHHHhhcCCCCCCcEEEEeCchHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhccccc
Q 028124 27 VAVDRLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMK 106 (213)
Q Consensus 27 ~~~~~~~~K~~~L~~ll~~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~ 106 (213)
++.. ...|+..+.+.+.... ..++++||||+|+..++.|+..|.+.| +.+..+||+..+.++..+.+.|+.
T Consensus 452 vy~t-~~eK~~al~~~I~~~~---~~gqpVLVFt~S~e~sE~Ls~~L~~~G-i~~~vLhgkq~~rE~~ii~~ag~~---- 522 (822)
T 3jux_A 452 VFRT-QKEKYEKIVEEIEKRY---KKGQPVLVGTTSIEKSELLSSMLKKKG-IPHQVLNAKYHEKEAEIVAKAGQK---- 522 (822)
T ss_dssp EESS-HHHHHHHHHHHHHHHH---HHTCCEEEEESSHHHHHHHHHHHHTTT-CCCEEECSCHHHHHHHHHHHHHST----
T ss_pred EEec-HHHHHHHHHHHHHHHh---hCCCCEEEEECCHHHHHHHHHHHHHCC-CCEEEeeCCchHHHHHHHHhCCCC----
Confidence 4444 4459999999887632 246899999999999999999999997 899999999766666656666665
Q ss_pred ccccccccCCCCCcCCCCCCceeEEEEeCCCCCcCcCCCCCC--------CCCEEEEecCCCChHHHHHhhccc--cCCC
Q 028124 107 WNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAI--------SARVLINYELPTKKETYIRRMTTC--LAAD 176 (213)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~rGld~~--------~v~~VI~yd~P~~~~~yi~R~GR~--~~~~ 176 (213)
..|+||||+ ++||+|++ +..+||||++|.+...|+||+||+ .|.+
T Consensus 523 ---------------------g~VtVATdm----AgRGtDI~lg~~V~~~GglhVInte~Pes~r~y~qriGRTGRqG~~ 577 (822)
T 3jux_A 523 ---------------------GMVTIATNM----AGRGTDIKLGPGVAELGGLCIIGTERHESRRIDNQLRGRAGRQGDP 577 (822)
T ss_dssp ---------------------TCEEEEETT----TTTTCCCCCCTTTTTTTSCEEEESSCCSSHHHHHHHHTTSSCSSCC
T ss_pred ---------------------CeEEEEcch----hhCCcCccCCcchhhcCCCEEEecCCCCCHHHHHHhhCccccCCCC
Confidence 359999999 99999998 667999999999999999999997 5778
Q ss_pred CeEEEEEeCchh
Q 028124 177 GSVINIVVGGEV 188 (213)
Q Consensus 177 g~~i~~~~~~e~ 188 (213)
|.+++|++.+|.
T Consensus 578 G~a~~fvsleD~ 589 (822)
T 3jux_A 578 GESIFFLSLEDD 589 (822)
T ss_dssp CEEEEEEETTSH
T ss_pred eeEEEEechhHH
Confidence 999999998763
No 41
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=99.80 E-value=1.6e-19 Score=180.13 Aligned_cols=140 Identities=14% Similarity=0.205 Sum_probs=116.6
Q ss_pred CCCCCCceEEEEEecCcchHHHHHHHHHHHhhcCCCCCCcEEEEeCchHHHHHHHHHHhccCCceEE-EecCCCCHHHHH
Q 028124 16 PSHFSQPRHFYVAVDRLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFS-SLHSDLAETERT 94 (213)
Q Consensus 16 ~~~~~~i~~~~~~~~~~~~K~~~L~~ll~~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~-~lhg~~~~~~R~ 94 (213)
.....++.|.|+.+ + |...|.++++.. +.++||||+++..++.++..|...+ +.+. .+||+ |.
T Consensus 282 ~~~~~~i~~~~~~~---~-k~~~L~~ll~~~------~~~~LVF~~s~~~a~~l~~~L~~~g-~~~~~~lhg~-----rr 345 (1104)
T 4ddu_A 282 VSVARNITHVRISS---R-SKEKLVELLEIF------RDGILIFAQTEEEGKELYEYLKRFK-FNVGETWSEF-----EK 345 (1104)
T ss_dssp CCCCCCEEEEEESC---C-CHHHHHHHHHHH------CSSEEEEESSSHHHHHHHHHHHHTT-CCEEESSSSH-----HH
T ss_pred CCCcCCceeEEEec---C-HHHHHHHHHHhc------CCCEEEEECcHHHHHHHHHHHHhCC-CCeeeEecCc-----HH
Confidence 44567888988766 2 677778888772 3799999999999999999999987 7898 99992 55
Q ss_pred HHHHHHhcccccccccccccCCCCCcCCCCCCceeEEEE----eCCCCCcCcCCCCCCC-CCEEEEecCCC---------
Q 028124 95 LILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVV----TDACLPLLSSGESAIS-ARVLINYELPT--------- 160 (213)
Q Consensus 95 ~~l~~Fr~g~~~~~~~~~~~~~~~~~~~~~~~~~~iLV~----Td~~~~~~~rGld~~~-v~~VI~yd~P~--------- 160 (213)
+ +++|++|+ .++||| |++ ++||+|+|+ |++|||||+|.
T Consensus 346 ~-l~~F~~G~-----------------------~~VLVatas~Tdv----larGIDip~~V~~VI~~d~P~~~~Sle~~~ 397 (1104)
T 4ddu_A 346 N-FEDFKVGK-----------------------INILIGVQAYYGK----LTRGVDLPERIKYVIFWGTPSMRFSLELDK 397 (1104)
T ss_dssp H-HHHHHHTS-----------------------CSEEEEETTTHHH----HCCSCCCTTTCCEEEEESCCEEEEECSSSS
T ss_pred H-HHHHHCCC-----------------------CCEEEEecCCCCe----eEecCcCCCCCCEEEEECCCCCCCCccccc
Confidence 5 99999985 999999 999 999999999 99999999999
Q ss_pred ---------------------------------------------------------------ChHHHHHhhccccC--C
Q 028124 161 ---------------------------------------------------------------KKETYIRRMTTCLA--A 175 (213)
Q Consensus 161 ---------------------------------------------------------------~~~~yi~R~GR~~~--~ 175 (213)
+..+|+||+||+|+ .
T Consensus 398 ~~~~~~~~l~~l~~~~~~~~~~~~~~~~e~~~~~l~~~~~~~~i~~~~~~l~~~~~~~~~~~pd~~tYihr~GRtgR~~~ 477 (1104)
T 4ddu_A 398 APRFVLARVLKEMGLIKAQENPDVEELRKIAKEHLTQKEFVEKVKEMFRGVVVKDEDLELIIPDVYTYIQASGRSSRILN 477 (1104)
T ss_dssp CCHHHHHHHHHHHSSCSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHCCSSEEETTTTEEEEECHHHHHHHHHTTCCEET
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhhccceEEecCCeeEEEecChhhhhcccCchhcccC
Confidence 78899999999754 3
Q ss_pred CC--eEEEEEeCchhHHHHHHHHHhc
Q 028124 176 DG--SVINIVVGGEVVTLRSMEESLG 199 (213)
Q Consensus 176 ~g--~~i~~~~~~e~~~~~~le~~l~ 199 (213)
.| ..++++..+|...++.|++.++
T Consensus 478 gg~~~Glsi~~~~d~~~~~~l~~~~~ 503 (1104)
T 4ddu_A 478 GVLVKGVSVIFEEDEEIFESLKTRLL 503 (1104)
T ss_dssp TEECCEEEEEECCCHHHHHHHHHHHH
T ss_pred CCcccceEEEEEecHHHHHHHHHHHh
Confidence 32 3455555578888899988875
No 42
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=99.80 E-value=6e-20 Score=166.74 Aligned_cols=114 Identities=12% Similarity=0.083 Sum_probs=95.0
Q ss_pred CCcEEEEeCchHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhcccccccccccccCCCCCcCCCCCCceeEEE
Q 028124 53 GLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIV 132 (213)
Q Consensus 53 ~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~~~~~~~~~~~~~~~~~~~~~~~~iLV 132 (213)
+.++||||++++.++.+++.|+..+ +.+..+|| ++|.+++++|++|+ .++||
T Consensus 177 ~~~~lVF~~s~~~a~~l~~~L~~~~-~~v~~lhg----~~R~~~~~~F~~g~-----------------------~~vLV 228 (440)
T 1yks_A 177 KRPTAWFLPSIRAANVMAASLRKAG-KSVVVLNR----KTFEREYPTIKQKK-----------------------PDFIL 228 (440)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHTT-CCEEECCS----SSCC--------CC-----------------------CSEEE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHcC-CCEEEecc----hhHHHHHhhhcCCC-----------------------ceEEE
Confidence 5799999999999999999999987 89999999 46889999999985 99999
Q ss_pred EeCCCCCcCcCCCCCCCCCEEEE-------------------ecCCCChHHHHHhhcccc---CCCCeEEEEE---eCch
Q 028124 133 VTDACLPLLSSGESAISARVLIN-------------------YELPTKKETYIRRMTTCL---AADGSVINIV---VGGE 187 (213)
Q Consensus 133 ~Td~~~~~~~rGld~~~v~~VI~-------------------yd~P~~~~~yi~R~GR~~---~~~g~~i~~~---~~~e 187 (213)
||++ +++|+|+| +++||| |+.|.+.++|+||+||+| ++.|.|+.|+ ++.+
T Consensus 229 aT~v----~e~GiDip-v~~VI~~g~~~~pv~~~~~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~g~~~~l~~~~~~~~ 303 (440)
T 1yks_A 229 ATDI----AEMGANLC-VERVLDCRTAFKPVLVDEGRKVAIKGPLRISASSAAQRRGRIGRNPNRDGDSYYYSEPTSENN 303 (440)
T ss_dssp ESSS----TTCCTTCC-CSEEEECCEEEEEEEETTTTEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSCCCCCC
T ss_pred ECCh----hheeeccC-ceEEEeCCccceeeecccccceeeccccccCHHHHHHhccccCCCCCCCceEEEEeccCChhh
Confidence 9999 99999999 999996 999999999999999974 4579999996 6778
Q ss_pred hHHHHHHHHHhc
Q 028124 188 VVTLRSMEESLG 199 (213)
Q Consensus 188 ~~~~~~le~~l~ 199 (213)
...+..++..+.
T Consensus 304 ~~~l~~l~~~~~ 315 (440)
T 1yks_A 304 AHHVCWLEASML 315 (440)
T ss_dssp TTBHHHHHHHHH
T ss_pred hhhhhhhhHHhc
Confidence 888888888753
No 43
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=99.79 E-value=3.1e-19 Score=168.68 Aligned_cols=115 Identities=10% Similarity=0.006 Sum_probs=103.1
Q ss_pred CCcEEEEeCchHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhcccccccccccccCCCCCcCCCCCCceeEEE
Q 028124 53 GLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIV 132 (213)
Q Consensus 53 ~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~~~~~~~~~~~~~~~~~~~~~~~~iLV 132 (213)
..++||||++++.++.+++.|+..+ +.+..+||+ +|.+++++|++|. .++||
T Consensus 355 ~~~~LVF~~s~~~a~~l~~~L~~~g-~~v~~lhg~----~R~~~l~~F~~g~-----------------------~~VLV 406 (618)
T 2whx_A 355 QGKTVWFVPSIKAGNDIANCLRKSG-KRVIQLSRK----TFDTEYPKTKLTD-----------------------WDFVV 406 (618)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHHTT-CCEEEECTT----THHHHTTHHHHSC-----------------------CSEEE
T ss_pred CCCEEEEECChhHHHHHHHHHHHcC-CcEEEEChH----HHHHHHHhhcCCC-----------------------cEEEE
Confidence 5799999999999999999999987 899999984 7888999999985 99999
Q ss_pred EeCCCCCcCcCCCCCCCCCEE--------------------EEecCCCChHHHHHhhccccC---CCCeEEEEEe---Cc
Q 028124 133 VTDACLPLLSSGESAISARVL--------------------INYELPTKKETYIRRMTTCLA---ADGSVINIVV---GG 186 (213)
Q Consensus 133 ~Td~~~~~~~rGld~~~v~~V--------------------I~yd~P~~~~~yi~R~GR~~~---~~g~~i~~~~---~~ 186 (213)
|||+ +++|+|++ +++| ||||+|.+.++|+||+||+|+ ..|.+++|+. +.
T Consensus 407 aTdv----~~rGiDi~-v~~VId~g~~~~P~~~~~~~~~~~i~~d~P~s~~~yiQR~GRaGR~g~~~G~ai~l~~~~~~~ 481 (618)
T 2whx_A 407 TTDI----SEMGANFR-AGRVIDPRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSGDPLKN 481 (618)
T ss_dssp ECGG----GGTTCCCC-CSEEEECCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSCCCCC
T ss_pred ECcH----HHcCcccC-ceEEEECcceecceecccCCCceEEcccccCCHHHHHHhccccCCCCCCCCeEEEEccCCchh
Confidence 9999 99999997 9988 889999999999999999753 3789999997 77
Q ss_pred hhHHHHHHHHHhcc
Q 028124 187 EVVTLRSMEESLGL 200 (213)
Q Consensus 187 e~~~~~~le~~l~~ 200 (213)
|...+..+++.+..
T Consensus 482 d~~~l~~le~~i~l 495 (618)
T 2whx_A 482 DEDHAHWTEAKMLL 495 (618)
T ss_dssp CTTCHHHHHHHHHH
T ss_pred hHHHHHHHHhHhcc
Confidence 88888888887633
No 44
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=99.78 E-value=6.1e-19 Score=175.28 Aligned_cols=140 Identities=16% Similarity=0.161 Sum_probs=115.5
Q ss_pred CCCCCceEEEEEecCcchHHHHHHHHHHHhhcCCCCCCcEEEEeCchHHHHHHHHHHhccCCceEEEecCCCCHHHHHHH
Q 028124 17 SHFSQPRHFYVAVDRLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLI 96 (213)
Q Consensus 17 ~~~~~i~~~~~~~~~~~~K~~~L~~ll~~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~lhg~~~~~~R~~~ 96 (213)
....++.|.++ . ..|...|.++++. .+.++||||++++.|+.+++.|+.. +.+..+||++ .++
T Consensus 249 ~~~~~i~~~~~---~-~~k~~~L~~ll~~------~~~~~LVF~~t~~~a~~l~~~L~~~--~~v~~lhg~~-----~~~ 311 (1054)
T 1gku_B 249 ITVRNVEDVAV---N-DESISTLSSILEK------LGTGGIIYARTGEEAEEIYESLKNK--FRIGIVTATK-----KGD 311 (1054)
T ss_dssp ECCCCEEEEEE---S-CCCTTTTHHHHTT------SCSCEEEEESSHHHHHHHHHTTTTS--SCEEECTTSS-----SHH
T ss_pred cCcCCceEEEe---c-hhHHHHHHHHHhh------cCCCEEEEEcCHHHHHHHHHHHhhc--cCeeEEeccH-----HHH
Confidence 34467888877 2 3377888888876 2578999999999999999999877 7999999998 378
Q ss_pred HHHHhcccccccccccccCCCCCcCCCCCCceeEEEE----eCCCCCcCcCCCCCCCC-CEEEEecCC------------
Q 028124 97 LEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVV----TDACLPLLSSGESAISA-RVLINYELP------------ 159 (213)
Q Consensus 97 l~~Fr~g~~~~~~~~~~~~~~~~~~~~~~~~~~iLV~----Td~~~~~~~rGld~~~v-~~VI~yd~P------------ 159 (213)
+++|++|. .++||| |++ ++||+|+|+| ++|||||+|
T Consensus 312 l~~F~~G~-----------------------~~VLVaTas~Tdv----~~rGIDip~VI~~VI~~~~P~~~~~~~~~~~~ 364 (1054)
T 1gku_B 312 YEKFVEGE-----------------------IDHLIGTAHYYGT----LVRGLDLPERIRFAVFVGCPSFRVTIEDIDSL 364 (1054)
T ss_dssp HHHHHHTS-----------------------CSEEEEECC----------CCSCCTTTCCEEEEESCCEEEEECSCGGGS
T ss_pred HHHHHcCC-----------------------CcEEEEecCCCCe----eEeccccCCcccEEEEeCCCcccccccccccC
Confidence 89999985 999999 899 9999999996 999999999
Q ss_pred -----------------------------------------------------------CChHHHHHhhccccC--CCC-
Q 028124 160 -----------------------------------------------------------TKKETYIRRMTTCLA--ADG- 177 (213)
Q Consensus 160 -----------------------------------------------------------~~~~~yi~R~GR~~~--~~g- 177 (213)
.+..+|+||+||+++ ..|
T Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~yiQr~GRagR~g~~g~ 444 (1054)
T 1gku_B 365 SPQMVKLLAYLYRNVDEIERLLPAVERHIDEVREILKKVMGKERPQAKDVVVREGEVIFPDLRTYIQGSGRTSRLFAGGL 444 (1054)
T ss_dssp CHHHHHHHHTTTSCHHHHHTTCTTTSSCHHHHHHHHHHHHTTSCCSCSSSEEETTEEEEECHHHHHHHHHTTCCEETTEE
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccceeEeecceecCcHHHHhhhhchhhhccCCCC
Confidence 789999999999865 565
Q ss_pred -eEEEEEeCchhHHHHHHHHHhcc
Q 028124 178 -SVINIVVGGEVVTLRSMEESLGL 200 (213)
Q Consensus 178 -~~i~~~~~~e~~~~~~le~~l~~ 200 (213)
.+++++...+...+..+++.++.
T Consensus 445 ~~g~~~~~~~d~~~~~~l~~~l~~ 468 (1054)
T 1gku_B 445 TKGASFLLEDDSELLSAFIERAKL 468 (1054)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHHT
T ss_pred ceEEEEEEecCHHHHHHHHHHHhh
Confidence 48999988899999999998875
No 45
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=99.78 E-value=1.3e-18 Score=167.85 Aligned_cols=129 Identities=13% Similarity=0.157 Sum_probs=111.9
Q ss_pred EEEecCcchHHHHHHHHHHHhhcCCCCCCcEEEEeCchHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhcccc
Q 028124 26 YVAVDRLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAM 105 (213)
Q Consensus 26 ~~~~~~~~~K~~~L~~ll~~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~lhg~~~~~~R~~~l~~Fr~g~~ 105 (213)
++++.. ..|+..|.+++.... ..++++||||+|+..++.|+..|++.| +.+..+||++.+.++..+.+.|+.|
T Consensus 418 ~v~~~~-~~K~~al~~~i~~~~---~~gqpvLVft~sie~se~Ls~~L~~~g-i~~~vLnak~~~rEa~iia~agr~G-- 490 (853)
T 2fsf_A 418 LVYMTE-AEKIQAIIEDIKERT---AKGQPVLVGTISIEKSELVSNELTKAG-IKHNVLNAKFHANEAAIVAQAGYPA-- 490 (853)
T ss_dssp EEESSH-HHHHHHHHHHHHHHH---TTTCCEEEEESSHHHHHHHHHHHHHTT-CCCEECCTTCHHHHHHHHHTTTSTT--
T ss_pred EEEeCH-HHHHHHHHHHHHHHh---cCCCCEEEEECcHHHHHHHHHHHHHCC-CCEEEecCChhHHHHHHHHhcCCCC--
Confidence 345554 459999999886532 357899999999999999999999998 8999999999888888888888875
Q ss_pred cccccccccCCCCCcCCCCCCceeEEEEeCCCCCcCcCCCCCCCC-----------------------------------
Q 028124 106 KWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISA----------------------------------- 150 (213)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~rGld~~~v----------------------------------- 150 (213)
.|+||||+ ++||+|++..
T Consensus 491 -----------------------~VtIATnm----AgRGtDI~l~gn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~ 543 (853)
T 2fsf_A 491 -----------------------AVTIATNM----AGRGTDIVLGGSWQAEVAALENPTAEQIEKIKADWQVRHDAVLEA 543 (853)
T ss_dssp -----------------------CEEEEESC----CSSCSCCCTTCCHHHHHHHCSSCCSSHHHHHHHHHHHHHHHHHHT
T ss_pred -----------------------eEEEeccc----ccCCcCccCCCchHhhhhhcccchhHHHHHHHHHhhhhhhHHHhc
Confidence 49999999 9999999974
Q ss_pred --CEEEEecCCCChHHHHHhhccc--cCCCCeEEEEEeCchh
Q 028124 151 --RVLINYELPTKKETYIRRMTTC--LAADGSVINIVVGGEV 188 (213)
Q Consensus 151 --~~VI~yd~P~~~~~yi~R~GR~--~~~~g~~i~~~~~~e~ 188 (213)
.+||||++|.+...|.||+||+ .|.+|.+++|++.+|.
T Consensus 544 GGl~VI~te~pes~riy~qr~GRTGRqGd~G~s~~fls~eD~ 585 (853)
T 2fsf_A 544 GGLHIIGTERHESRRIDNQLRGRSGRQGDAGSSRFYLSMEDA 585 (853)
T ss_dssp TSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEETTSG
T ss_pred CCcEEEEccCCCCHHHHHhhccccccCCCCeeEEEEecccHH
Confidence 5999999999999999999997 5788999999997764
No 46
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=99.77 E-value=3e-19 Score=172.61 Aligned_cols=140 Identities=11% Similarity=0.159 Sum_probs=113.1
Q ss_pred CCceEEEEEecCcchHHHHHHHHHHHhhcCCCCCCcEEEEeCchHHHHHHHHHHhc----------cCCceEEEecCCCC
Q 028124 20 SQPRHFYVAVDRLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSN----------LADISFSSLHSDLA 89 (213)
Q Consensus 20 ~~i~~~~~~~~~~~~K~~~L~~ll~~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~----------~~~~~~~~lhg~~~ 89 (213)
..+.++|...+..+.....+..+++.... ...+++||||+++..++.+++.|.. .+++.+..+||+|+
T Consensus 272 ~pv~~~~~~~~~~~~~~~~l~~l~~~~~~--~~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~ 349 (773)
T 2xau_A 272 YPVELYYTPEFQRDYLDSAIRTVLQIHAT--EEAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLP 349 (773)
T ss_dssp CCEEEECCSSCCSCHHHHHHHHHHHHHHH--SCSCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCC
T ss_pred cceEEEEecCCchhHHHHHHHHHHHHHHh--cCCCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCC
Confidence 45778777666655222333333332211 3568999999999999999999974 13478999999999
Q ss_pred HHHHHHHHHHHh-----cccccccccccccCCCCCcCCCCCCceeEEEEeCCCCCcCcCCCCCCCCCEEEEecC------
Q 028124 90 ETERTLILEEFR-----HTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYEL------ 158 (213)
Q Consensus 90 ~~~R~~~l~~Fr-----~g~~~~~~~~~~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~rGld~~~v~~VI~yd~------ 158 (213)
+++|.++++.|+ .| ..+|||||++ +++|+|+|++++||+|++
T Consensus 350 ~~eR~~v~~~f~~~~~~~g-----------------------~~kVlVAT~i----ae~GidIp~v~~VId~g~~k~~~y 402 (773)
T 2xau_A 350 PHQQQRIFEPAPESHNGRP-----------------------GRKVVISTNI----AETSLTIDGIVYVVDPGFSKQKVY 402 (773)
T ss_dssp HHHHGGGGSCCCCCSSSSC-----------------------CEEEEEECTH----HHHTCCCTTEEEEEECSEEEEEEE
T ss_pred HHHHHHHHhhcccccCCCC-----------------------ceEEEEeCcH----HHhCcCcCCeEEEEeCCCccceee
Confidence 999999999999 66 4999999999 999999999999999887
Q ss_pred ------------CCChHHHHHhhccccC-CCCeEEEEEeCchh
Q 028124 159 ------------PTKKETYIRRMTTCLA-ADGSVINIVVGGEV 188 (213)
Q Consensus 159 ------------P~~~~~yi~R~GR~~~-~~g~~i~~~~~~e~ 188 (213)
|.+.++|+||+||+|+ .+|.|+.|+++.+.
T Consensus 403 d~~~g~~~L~~~p~S~~s~~QR~GRaGR~~~G~~~~l~~~~~~ 445 (773)
T 2xau_A 403 NPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCFRLYTEEAF 445 (773)
T ss_dssp ETTTTEEEEEEEECCHHHHHHHHHGGGSSSSEEEEESSCHHHH
T ss_pred ccccCccccccccCCHHHHHhhccccCCCCCCEEEEEecHHHh
Confidence 8899999999999876 57999999986544
No 47
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=99.76 E-value=9.5e-19 Score=166.84 Aligned_cols=115 Identities=9% Similarity=0.014 Sum_probs=102.1
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhcccccccccccccCCCCCcCCCCCCceeEE
Q 028124 52 PGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMI 131 (213)
Q Consensus 52 ~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~~~~~~~~~~~~~~~~~~~~~~~~iL 131 (213)
.+.++||||++++.++.+++.|+..+ +.+..+||+ +|.+++++|++|+ .+||
T Consensus 409 ~~~~~lVF~~s~~~~e~la~~L~~~g-~~v~~lHg~----eR~~v~~~F~~g~-----------------------~~VL 460 (673)
T 2wv9_A 409 YAGKTVWFVASVKMSNEIAQCLQRAG-KRVIQLNRK----SYDTEYPKCKNGD-----------------------WDFV 460 (673)
T ss_dssp CCSCEEEECSSHHHHHHHHHHHHTTT-CCEEEECSS----SHHHHGGGGGTCC-----------------------CSEE
T ss_pred CCCCEEEEECCHHHHHHHHHHHHhCC-CeEEEeChH----HHHHHHHHHHCCC-----------------------ceEE
Confidence 46799999999999999999999987 899999994 7899999999985 9999
Q ss_pred EEeCCCCCcCcCCCCCCCCCEEEE--------------------ecCCCChHHHHHhhcccc---CCCCeEEEEE---eC
Q 028124 132 VVTDACLPLLSSGESAISARVLIN--------------------YELPTKKETYIRRMTTCL---AADGSVINIV---VG 185 (213)
Q Consensus 132 V~Td~~~~~~~rGld~~~v~~VI~--------------------yd~P~~~~~yi~R~GR~~---~~~g~~i~~~---~~ 185 (213)
|||++ +++|+|+| +++||| ||+|.+.++|+||+||+| ++.|.|+.|+ .+
T Consensus 461 VaTdv----~e~GIDip-v~~VI~~g~~~~p~vi~da~~r~~ll~d~P~s~~~y~Qr~GRaGR~~g~~G~ai~l~~~~~~ 535 (673)
T 2wv9_A 461 ITTDI----SEMGANFG-ASRVIDCRKSVKPTILDEGEGRVILSVPSAITSASAAQRRGRVGRNPSQIGDEYHYGGGTSE 535 (673)
T ss_dssp EECGG----GGTTCCCC-CSEEEECCEECCEEEECSTTCEEEECCSEECCHHHHHHHHTTSSCCSSCCCEEEEECSCCCC
T ss_pred EECch----hhcceeeC-CcEEEECCCcccceeeecccccceecccCCCCHHHHHHHhhccCCCCCCCCEEEEEEecCCh
Confidence 99999 99999999 999998 679999999999999974 4579999996 56
Q ss_pred chhHHHHHHHHHhc
Q 028124 186 GEVVTLRSMEESLG 199 (213)
Q Consensus 186 ~e~~~~~~le~~l~ 199 (213)
.+...+..++..+.
T Consensus 536 ~d~~~l~~ie~~~~ 549 (673)
T 2wv9_A 536 DDTMLAHWTEAKIL 549 (673)
T ss_dssp CCTTBHHHHHHHHH
T ss_pred hHHHHHHHHHHHHh
Confidence 77777777777653
No 48
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=99.76 E-value=7.3e-18 Score=163.17 Aligned_cols=129 Identities=14% Similarity=0.132 Sum_probs=110.6
Q ss_pred EEEecCcchHHHHHHHHHHHhhcCCCCCCcEEEEeCchHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhcccc
Q 028124 26 YVAVDRLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAM 105 (213)
Q Consensus 26 ~~~~~~~~~K~~~L~~ll~~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~lhg~~~~~~R~~~l~~Fr~g~~ 105 (213)
++++.. ..|+..|.+.+.... ..++++||||+|+..++.|+..|.+.| +.+..|||++.+.++..+.+.|+.|
T Consensus 437 ~v~~t~-~~K~~al~~~i~~~~---~~gqpvLVft~Sie~sE~Ls~~L~~~G-i~~~vLnak~~~rEa~iia~agr~G-- 509 (922)
T 1nkt_A 437 LIYKTE-EAKYIAVVDDVAERY---AKGQPVLIGTTSVERSEYLSRQFTKRR-IPHNVLNAKYHEQEATIIAVAGRRG-- 509 (922)
T ss_dssp EEESCH-HHHHHHHHHHHHHHH---HTTCCEEEEESCHHHHHHHHHHHHHTT-CCCEEECSSCHHHHHHHHHTTTSTT--
T ss_pred EEEeCH-HHHHHHHHHHHHHHH---hcCCcEEEEECCHHHHHHHHHHHHHCC-CCEEEecCChhHHHHHHHHhcCCCC--
Confidence 345544 459999999886532 246799999999999999999999998 8999999998888877777778774
Q ss_pred cccccccccCCCCCcCCCCCCceeEEEEeCCCCCcCcCCCCCCCC-----------------------------------
Q 028124 106 KWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISA----------------------------------- 150 (213)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~rGld~~~v----------------------------------- 150 (213)
.|+||||+ ++||+|++.+
T Consensus 510 -----------------------~VtIATnm----AgRGtDI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 562 (922)
T 1nkt_A 510 -----------------------GVTVATNM----AGRGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELPI 562 (922)
T ss_dssp -----------------------CEEEEETT----CSTTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHH
T ss_pred -----------------------eEEEecch----hhcCccccCCCCHHHHHHHHHhhccccccccchhhHHHHHHHHHH
Confidence 48999999 9999999975
Q ss_pred -----------------CEEEEecCCCChHHHHHhhccc--cCCCCeEEEEEeCchh
Q 028124 151 -----------------RVLINYELPTKKETYIRRMTTC--LAADGSVINIVVGGEV 188 (213)
Q Consensus 151 -----------------~~VI~yd~P~~~~~yi~R~GR~--~~~~g~~i~~~~~~e~ 188 (213)
.+||||+.|.+...|.||+||+ .|.+|.+++|++.+|.
T Consensus 563 ~~~~~~~~~~~V~~~GGlhVI~te~pes~riy~qr~GRTGRqGdpG~s~fflSleD~ 619 (922)
T 1nkt_A 563 VKEEASKEAKEVIEAGGLYVLGTERHESRRIDNQLRGRSGRQGDPGESRFYLSLGDE 619 (922)
T ss_dssp HHHHTTHHHHHHHHTTSEEEEECSCCSSHHHHHHHHHTSSGGGCCEEEEEEEETTSH
T ss_pred HHHHHHHhhhHHHhcCCcEEEeccCCCCHHHHHHHhcccccCCCCeeEEEEechhHH
Confidence 4999999999999999999997 5788999999997765
No 49
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=99.75 E-value=4.7e-19 Score=161.58 Aligned_cols=101 Identities=9% Similarity=0.020 Sum_probs=89.2
Q ss_pred CCcEEEEeCchHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhcccccccccccccCCCCCcCCCCCCceeEEE
Q 028124 53 GLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIV 132 (213)
Q Consensus 53 ~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~~~~~~~~~~~~~~~~~~~~~~~~iLV 132 (213)
.+++||||++++.++.+++.|+..+ +.+..+||+ +|.+++++|++|. .+|||
T Consensus 190 ~~~~LVF~~s~~~~~~l~~~L~~~g-~~v~~lh~~----~R~~~~~~f~~g~-----------------------~~iLV 241 (459)
T 2z83_A 190 AGKTVWFVASVKMGNEIAMCLQRAG-KKVIQLNRK----SYDTEYPKCKNGD-----------------------WDFVI 241 (459)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHTT-CCEEEESTT----CCCCCGGGSSSCC-----------------------CSEEE
T ss_pred CCCEEEEeCChHHHHHHHHHHHhcC-CcEEecCHH----HHHHHHhhccCCC-----------------------ceEEE
Confidence 5799999999999999999999987 899999995 6788999999985 99999
Q ss_pred EeCCCCCcCcCCCCCCCCCEEEE--------------------ecCCCChHHHHHhhccccC--C-CCeEEEEEeCc
Q 028124 133 VTDACLPLLSSGESAISARVLIN--------------------YELPTKKETYIRRMTTCLA--A-DGSVINIVVGG 186 (213)
Q Consensus 133 ~Td~~~~~~~rGld~~~v~~VI~--------------------yd~P~~~~~yi~R~GR~~~--~-~g~~i~~~~~~ 186 (213)
||++ +++|+|+|+ ++||| ||+|.+.++|+||+||+|+ . +|.++.|+...
T Consensus 242 aT~v----~~~GiDip~-~~VI~~G~~~~~~~~~~~~~~~~~~~d~p~s~~~~~QR~GRaGR~g~~~G~~~~~~~~~ 313 (459)
T 2z83_A 242 TTDI----SEMGANFGA-SRVIDCRKSVKPTILEEGEGRVILGNPSPITSASAAQRRGRVGRNPNQVGDEYHYGGAT 313 (459)
T ss_dssp ESSC----C---CCCSC-SEEEECCEECCEEEECSSSCEEEECSCEECCHHHHHHHHTTSSCCTTCCCEEEEECSCC
T ss_pred ECCh----HHhCeecCC-CEEEECCcccccccccccccccccccCCCCCHHHHHHhccccCCCCCCCCeEEEEEccc
Confidence 9999 999999999 99999 8899999999999999753 3 79999999764
No 50
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=99.74 E-value=9.8e-18 Score=152.83 Aligned_cols=124 Identities=15% Similarity=0.149 Sum_probs=103.9
Q ss_pred chHHHHHHHHHHHhhcCCCCCCcEEEEeCchHHHHHHHHHHhcc-CCceEEEecCCCCHHHHHHHHHHHhcccccccccc
Q 028124 33 QFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNL-ADISFSSLHSDLAETERTLILEEFRHTAMKWNQKV 111 (213)
Q Consensus 33 ~~K~~~L~~ll~~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~-~~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~~~~~~ 111 (213)
..|+..+.++++.... .+.++||||+++..++.+...|... + +.+..+||+++..+|.+++++|+++.
T Consensus 324 s~K~~~l~~~l~~~~~---~~~k~lvF~~~~~~~~~l~~~l~~~~~-~~~~~~~g~~~~~~R~~~~~~F~~~~------- 392 (500)
T 1z63_A 324 SGKMIRTMEIIEEALD---EGDKIAIFTQFVDMGKIIRNIIEKELN-TEVPFLYGELSKKERDDIISKFQNNP------- 392 (500)
T ss_dssp CHHHHHHHHHHHHHHT---TTCCEEEECSCHHHHHHHHHHHHHHHT-CCCCEEETTSCHHHHHHHHHHHHHCT-------
T ss_pred chhHHHHHHHHHHHHc---cCCcEEEEEehHHHHHHHHHHHHHhhC-CCeEEEECCCCHHHHHHHHHHhcCCC-------
Confidence 4599999999987543 5789999999999999999999875 6 78999999999999999999999973
Q ss_pred cccCCCCCcCCCCCCcee-EEEEeCCCCCcCcCCCCCCCCCEEEEecCCCChHHHHHhhccc--cCCC--CeEEEEEeCc
Q 028124 112 TEQSGDESETGKDEHKSH-MIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTC--LAAD--GSVINIVVGG 186 (213)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~-iLV~Td~~~~~~~rGld~~~v~~VI~yd~P~~~~~yi~R~GR~--~~~~--g~~i~~~~~~ 186 (213)
..+ +|++|++ +++|+|++.+++||+||+||++..|.||+||+ .|+. ..++.++..+
T Consensus 393 ---------------~~~vil~st~~----~~~Glnl~~~~~vi~~d~~~~~~~~~Q~~gR~~R~Gq~~~v~v~~lv~~~ 453 (500)
T 1z63_A 393 ---------------SVKFIVLSVKA----GGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVG 453 (500)
T ss_dssp ---------------TCCCCEEECCC----C-CCCCCTTCSEEEESSCCSCC---CHHHHTTTTTTTTSCEEEEEEEETT
T ss_pred ---------------CCCEEEEeccc----ccCCCchhhCCEEEEeCCCCCcchHHHHHHHHHHcCCCCeeEEEEEEeCC
Confidence 244 8999999 99999999999999999999999999999996 3333 4567788776
No 51
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=99.74 E-value=2.2e-17 Score=157.29 Aligned_cols=139 Identities=19% Similarity=0.197 Sum_probs=105.3
Q ss_pred HHHHHHHHHHHhhcCCCCCCcEEEEeCchHHHHHHHHHHhccCC-----------------------------------c
Q 028124 35 KMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLAD-----------------------------------I 79 (213)
Q Consensus 35 K~~~L~~ll~~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~-----------------------------------~ 79 (213)
+...+.++++ .++++||||++++.++.++..|..... .
T Consensus 241 ~~~~~~~~~~-------~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~ 313 (715)
T 2va8_A 241 IIAYTLDSLS-------KNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKSLISK 313 (715)
T ss_dssp HHHHHHHHHT-------TTCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHh-------cCCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHHHHHHhc
Confidence 5555544443 468999999999999999999975410 1
Q ss_pred eEEEecCCCCHHHHHHHHHHHhcccccccccccccCCCCCcCCCCCCceeEEEEeCCCCCcCcCCCCCCCCCEEEE----
Q 028124 80 SFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLIN---- 155 (213)
Q Consensus 80 ~~~~lhg~~~~~~R~~~l~~Fr~g~~~~~~~~~~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~rGld~~~v~~VI~---- 155 (213)
.+..+||+|++++|..+++.|++|. +++||||++ +++|+|+|++++||+
T Consensus 314 ~v~~~h~~l~~~~r~~v~~~f~~g~-----------------------~~vlvaT~~----l~~Gidip~~~~VI~~~~~ 366 (715)
T 2va8_A 314 GVAYHHAGLSKALRDLIEEGFRQRK-----------------------IKVIVATPT----LAAGVNLPARTVIIGDIYR 366 (715)
T ss_dssp TEEEECTTSCHHHHHHHHHHHHTTC-----------------------SCEEEECGG----GGGSSCCCBSEEEECCC--
T ss_pred CEEEECCCCCHHHHHHHHHHHHcCC-----------------------CeEEEEChH----HhcccCCCceEEEEeCCee
Confidence 3889999999999999999999985 999999999 999999999999999
Q ss_pred ec-------CCCChHHHHHhhccccCC----CCeEEEEEeCchhHHHHHHHHHhcccccccCcc
Q 028124 156 YE-------LPTKKETYIRRMTTCLAA----DGSVINIVVGGEVVTLRSMEESLGLIVAEVPIN 208 (213)
Q Consensus 156 yd-------~P~~~~~yi~R~GR~~~~----~g~~i~~~~~~e~~~~~~le~~l~~~~~~~~~~ 208 (213)
|| .|.+..+|.||+||+|+. .|.|+.+++..+. ....+++++....+++..+
T Consensus 367 ~d~~~~~~~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~~-~~~~~~~~l~~~~e~~~s~ 429 (715)
T 2va8_A 367 FNKKIAGYYDEIPIMEYKQMSGRAGRPGFDQIGESIVVVRDKED-VDRVFKKYVLSDVEPIESK 429 (715)
T ss_dssp ------------CHHHHHHHHTTBCCTTTCSCEEEEEECSCGGG-HHHHHHHTTSSCCCCCCCS
T ss_pred ccccCCCCCCcCCHHHHHHHhhhcCCCCCCCCceEEEEeCCchH-HHHHHHHHHcCCCCCceec
Confidence 99 899999999999998652 5899999987653 1123344554444444333
No 52
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=99.73 E-value=1.4e-17 Score=159.02 Aligned_cols=138 Identities=17% Similarity=0.146 Sum_probs=111.2
Q ss_pred HHHHHHHHHHHhhcCCCCCCcEEEEeCchHHHHHHHHHHhccC-----------------C---------------ceEE
Q 028124 35 KMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLA-----------------D---------------ISFS 82 (213)
Q Consensus 35 K~~~L~~ll~~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~-----------------~---------------~~~~ 82 (213)
+...+.++++. ++++||||++++.++.++..|.... . ..+.
T Consensus 226 ~~~~~~~~~~~-------~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~ 298 (720)
T 2zj8_A 226 WEELVYDAIRK-------KKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVA 298 (720)
T ss_dssp TTHHHHHHHHT-------TCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEE
T ss_pred HHHHHHHHHhC-------CCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHhcCee
Confidence 55666665543 5899999999999999999987531 0 1388
Q ss_pred EecCCCCHHHHHHHHHHHhcccccccccccccCCCCCcCCCCCCceeEEEEeCCCCCcCcCCCCCCCCCEEEE----ec-
Q 028124 83 SLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLIN----YE- 157 (213)
Q Consensus 83 ~lhg~~~~~~R~~~l~~Fr~g~~~~~~~~~~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~rGld~~~v~~VI~----yd- 157 (213)
.+||+|++++|..+++.|++|. +++||||++ +++|+|+|++++||+ ||
T Consensus 299 ~~h~~l~~~~R~~v~~~f~~g~-----------------------~~vlvaT~~----l~~Gvdip~~~~VI~~~~~yd~ 351 (720)
T 2zj8_A 299 FHHAGLGRDERVLVEENFRKGI-----------------------IKAVVATPT----LSAGINTPAFRVIIRDIWRYSD 351 (720)
T ss_dssp EECTTSCHHHHHHHHHHHHTTS-----------------------SCEEEECST----TGGGCCCCBSEEEECCSEECCS
T ss_pred eecCCCCHHHHHHHHHHHHCCC-----------------------CeEEEECcH----hhccCCCCceEEEEcCCeeecC
Confidence 9999999999999999999985 999999999 999999999999999 88
Q ss_pred ---CCCChHHHHHhhccccC----CCCeEEEEEeCchhHHHHHHHHHhcccccccCcc
Q 028124 158 ---LPTKKETYIRRMTTCLA----ADGSVINIVVGGEVVTLRSMEESLGLIVAEVPIN 208 (213)
Q Consensus 158 ---~P~~~~~yi~R~GR~~~----~~g~~i~~~~~~e~~~~~~le~~l~~~~~~~~~~ 208 (213)
.|.+..+|+||+||+|+ ..|.|+.+++..+.. ..+++++....+++...
T Consensus 352 ~g~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~~~--~~~~~~~~~~~~~i~s~ 407 (720)
T 2zj8_A 352 FGMERIPIIEVHQMLGRAGRPKYDEVGEGIIVSTSDDPR--EVMNHYIFGKPEKLFSQ 407 (720)
T ss_dssp SSCEECCHHHHHHHHTTBCCTTTCSEEEEEEECSSSCHH--HHHHHHTTSCCCCCCCC
T ss_pred CCCccCCHHHHHHHHhhcCCCCCCCCceEEEEecCccHH--HHHHHHhcCCCCCcEee
Confidence 68999999999999865 358999999877622 23445665555555433
No 53
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=99.73 E-value=1.8e-17 Score=164.15 Aligned_cols=116 Identities=19% Similarity=0.181 Sum_probs=100.2
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhccCC--------------------------------------ceEEEecCCCCHHHH
Q 028124 52 PGLPMIVCCSSRDELDAVCSAVSNLAD--------------------------------------ISFSSLHSDLAETER 93 (213)
Q Consensus 52 ~~~~~IIF~~~~~~~~~l~~~L~~~~~--------------------------------------~~~~~lhg~~~~~~R 93 (213)
...++||||+++..|+.++..|...+. ..+..+||+|++.+|
T Consensus 342 ~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gI~~~Hggl~~~eR 421 (1010)
T 2xgj_A 342 KYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILK 421 (1010)
T ss_dssp TCCSEEEEESSHHHHHHHHHTTTTSCCCCHHHHHHHHHHHHHHHTTSCGGGTTCHHHHHHHHHHHHTEEEESTTSCHHHH
T ss_pred CCCCEEEEECCHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHHhCCeeEECCCCCHHHH
Confidence 456999999999999999999976431 017889999999999
Q ss_pred HHHHHHHhcccccccccccccCCCCCcCCCCCCceeEEEEeCCCCCcCcCCCCCCCCCEEEE----ecC----CCChHHH
Q 028124 94 TLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLIN----YEL----PTKKETY 165 (213)
Q Consensus 94 ~~~l~~Fr~g~~~~~~~~~~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~rGld~~~v~~VI~----yd~----P~~~~~y 165 (213)
..+++.|++|. +++||||++ +++|+|+|++++||+ ||. |.++..|
T Consensus 422 ~~ve~~F~~G~-----------------------ikVLVAT~~----la~GIDiP~~~vVI~~~~kfd~~~~rp~s~~~y 474 (1010)
T 2xgj_A 422 EVIEILFQEGF-----------------------LKVLFATET----FSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEY 474 (1010)
T ss_dssp HHHHHHHHTTC-----------------------CSEEEEEGG----GGGSTTCCBSEEEESCSEEECSSCEEECCHHHH
T ss_pred HHHHHHHhcCC-----------------------CcEEEEehH----hhccCCCCCceEEEeCCcccCCcCCccCCHHHH
Confidence 99999999985 999999999 999999999999999 999 8999999
Q ss_pred HHhhccccCC----CCeEEEEEeCc-hhHHHHHH
Q 028124 166 IRRMTTCLAA----DGSVINIVVGG-EVVTLRSM 194 (213)
Q Consensus 166 i~R~GR~~~~----~g~~i~~~~~~-e~~~~~~l 194 (213)
+||+||+|+. .|.||.++.+. +...+.++
T Consensus 475 ~Qr~GRAGR~G~d~~G~vi~l~~~~~e~~~~~~l 508 (1010)
T 2xgj_A 475 IQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGM 508 (1010)
T ss_dssp HHHHTTBCCTTTCSSEEEEEEECSCCCHHHHHHH
T ss_pred hHhhhhcccCCCCCceEEEEEECCCCCHHHHHHH
Confidence 9999998644 49999999865 44444444
No 54
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=99.73 E-value=4.7e-18 Score=153.93 Aligned_cols=116 Identities=20% Similarity=0.276 Sum_probs=102.0
Q ss_pred chHHHHHHHHHHHhhcCCCCCCcEEEEeCchHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhccccccccccc
Q 028124 33 QFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVT 112 (213)
Q Consensus 33 ~~K~~~L~~ll~~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~~~~~~~ 112 (213)
..|...|.++++. ..+.++||||++++.++.+++.|. +..+||+++..+|.+++++|++|+
T Consensus 334 ~~k~~~l~~~l~~-----~~~~k~lvF~~~~~~~~~l~~~l~------~~~~~g~~~~~~R~~~~~~F~~g~-------- 394 (472)
T 2fwr_A 334 KNKIRKLREILER-----HRKDKIIIFTRHNELVYRISKVFL------IPAITHRTSREEREEILEGFRTGR-------- 394 (472)
T ss_dssp SHHHHHHHHHHHH-----TSSSCBCCBCSCHHHHHHHHHHTT------CCBCCSSSCSHHHHTHHHHHHHSS--------
T ss_pred hHHHHHHHHHHHh-----CCCCcEEEEECCHHHHHHHHHHhC------cceeeCCCCHHHHHHHHHHHhCCC--------
Confidence 3488999999987 457899999999999999999983 446899999999999999999985
Q ss_pred ccCCCCCcCCCCCCceeEEEEeCCCCCcCcCCCCCCCCCEEEEecCCCChHHHHHhhcccc--C---CCCeEEEEEeCc
Q 028124 113 EQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCL--A---ADGSVINIVVGG 186 (213)
Q Consensus 113 ~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~rGld~~~v~~VI~yd~P~~~~~yi~R~GR~~--~---~~g~~i~~~~~~ 186 (213)
.++||+|++ +++|+|+|++++||+||.|+++..|+||+||++ | +...++.++..+
T Consensus 395 ---------------~~vLv~T~~----~~~Gldlp~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~k~~~~i~~lv~~~ 454 (472)
T 2fwr_A 395 ---------------FRAIVSSQV----LDEGIDVPDANVGVIMSGSGSAREYIQRLGRILRPSKGKKEAVLYELISRG 454 (472)
T ss_dssp ---------------CSBCBCSSC----CCSSSCSCCBSEEEEECCSSCCHHHHHHHHHSBCCCTTTCCEEEEEEEECS
T ss_pred ---------------CCEEEEcCc----hhcCcccccCcEEEEECCCCCHHHHHHHHhhccCCCCCCceEEEEEEEeCC
Confidence 999999999 999999999999999999999999999999973 2 234677788764
No 55
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=99.73 E-value=1.1e-17 Score=167.45 Aligned_cols=147 Identities=12% Similarity=0.135 Sum_probs=115.9
Q ss_pred CCCCCCCCCCCCCCCCCceEEEEEecCcchHHHHHHHHHHHhhcCCCCCCcEEEEeCchHHHHHHHHHHhcc-CCceEEE
Q 028124 5 GVESPCPPCQSPSHFSQPRHFYVAVDRLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNL-ADISFSS 83 (213)
Q Consensus 5 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~K~~~L~~ll~~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~-~~~~~~~ 83 (213)
++..+..+...+..+..+++++.... +......+++.+ ..+.+++||||++++++.+++.|+.. +++.+..
T Consensus 772 ~~~~~~~i~~~~~~r~~i~~~~~~~~----~~~i~~~il~~l----~~g~qvlvf~~~v~~~~~l~~~L~~~~p~~~v~~ 843 (1151)
T 2eyq_A 772 GMRDLSIIATPPARRLAVKTFVREYD----SMVVREAILREI----LRGGQVYYLYNDVENIQKAAERLAELVPEARIAI 843 (1151)
T ss_dssp TTSEEEECCCCCCBCBCEEEEEEECC----HHHHHHHHHHHH----TTTCEEEEECCCSSCHHHHHHHHHHHCTTSCEEE
T ss_pred cCCCceEEecCCCCccccEEEEecCC----HHHHHHHHHHHH----hcCCeEEEEECCHHHHHHHHHHHHHhCCCCeEEE
Confidence 33333334444445555666655433 333444455542 34689999999999999999999876 3378999
Q ss_pred ecCCCCHHHHHHHHHHHhcccccccccccccCCCCCcCCCCCCceeEEEEeCCCCCcCcCCCCCCCCCEEEEecC-CCCh
Q 028124 84 LHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYEL-PTKK 162 (213)
Q Consensus 84 lhg~~~~~~R~~~l~~Fr~g~~~~~~~~~~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~rGld~~~v~~VI~yd~-P~~~ 162 (213)
+||+|++.+|.+++++|++|. .++||||++ +++|+|+|++++||+++. ++++
T Consensus 844 lhg~~~~~eR~~il~~F~~g~-----------------------~~VLVaT~v----~e~GiDip~v~~VIi~~~~~~~l 896 (1151)
T 2eyq_A 844 GHGQMRERELERVMNDFHHQR-----------------------FNVLVCTTI----IETGIDIPTANTIIIERADHFGL 896 (1151)
T ss_dssp CCSSCCHHHHHHHHHHHHTTS-----------------------CCEEEESST----TGGGSCCTTEEEEEETTTTSSCH
T ss_pred EeCCCCHHHHHHHHHHHHcCC-----------------------CcEEEECCc----ceeeecccCCcEEEEeCCCCCCH
Confidence 999999999999999999985 999999999 999999999999999998 5799
Q ss_pred HHHHHhhccc--cCCCCeEEEEEeCc
Q 028124 163 ETYIRRMTTC--LAADGSVINIVVGG 186 (213)
Q Consensus 163 ~~yi~R~GR~--~~~~g~~i~~~~~~ 186 (213)
..|+||+||+ .|+.|.|+.++.+.
T Consensus 897 ~~l~Qr~GRvgR~g~~g~~~ll~~~~ 922 (1151)
T 2eyq_A 897 AQLHQLRGRVGRSHHQAYAWLLTPHP 922 (1151)
T ss_dssp HHHHHHHTTCCBTTBCEEEEEEECCG
T ss_pred HHHHHHHhccCcCCCceEEEEEECCc
Confidence 9999999997 45679999988764
No 56
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=99.72 E-value=7.1e-17 Score=152.92 Aligned_cols=139 Identities=15% Similarity=0.159 Sum_probs=115.9
Q ss_pred chHHHHHHHHHHHhhcCCCCCCcEEEEeCchHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhccccccccccc
Q 028124 33 QFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVT 112 (213)
Q Consensus 33 ~~K~~~L~~ll~~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~~~~~~~ 112 (213)
..|+..|..+++.+.. ..+.++||||++...++.+...|...+ +.+..+||+++..+|.+++++|+++.
T Consensus 398 s~K~~~l~~ll~~~~~--~~~~k~lIFs~~~~~~~~l~~~l~~~g-~~~~~l~G~~~~~~R~~~i~~F~~~~-------- 466 (644)
T 1z3i_X 398 SGKMLVLDYILAMTRT--TTSDKVVLVSNYTQTLDLFEKLCRNRR-YLYVRLDGTMSIKKRAKIVERFNNPS-------- 466 (644)
T ss_dssp SHHHHHHHHHHHHHHH--HCCCEEEEEESCHHHHHHHHHHHHHHT-CCEEEECSSCCHHHHHHHHHHHHSTT--------
T ss_pred ChHHHHHHHHHHHHhh--cCCCEEEEEEccHHHHHHHHHHHHHCC-CCEEEEeCCCCHHHHHHHHHHhcCCC--------
Confidence 4589999888876432 346899999999999999999999887 89999999999999999999999974
Q ss_pred ccCCCCCcCCCCCCceeEEEEeCCCCCcCcCCCCCCCCCEEEEecCCCChHHHHHhhccc--cCC--CCeEEEEEeCc--
Q 028124 113 EQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTC--LAA--DGSVINIVVGG-- 186 (213)
Q Consensus 113 ~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~rGld~~~v~~VI~yd~P~~~~~yi~R~GR~--~~~--~g~~i~~~~~~-- 186 (213)
.....+|++|++ +++|+|++.+++||+||+||++..|.||+||+ .|+ ...++.|+..+
T Consensus 467 ------------~~~~v~L~st~a----~g~Glnl~~a~~Vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~v~v~~lv~~~ti 530 (644)
T 1z3i_X 467 ------------SPEFIFMLSSKA----GGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSTGTI 530 (644)
T ss_dssp ------------CCCCEEEEEGGG----SCTTCCCTTEEEEEECSCCSSHHHHHHHHTTSSSTTCCSCEEEEEEEETTSH
T ss_pred ------------CCcEEEEEeccc----ccCCcccccCCEEEEECCCCCccHHHHHHHhhhhcCCCCceEEEEEEECCCH
Confidence 001358999999 99999999999999999999999999999996 343 35778888876
Q ss_pred hhHHHHHHHHHh
Q 028124 187 EVVTLRSMEESL 198 (213)
Q Consensus 187 e~~~~~~le~~l 198 (213)
|...+...+.+.
T Consensus 531 Ee~i~~~~~~K~ 542 (644)
T 1z3i_X 531 EEKILQRQAHKK 542 (644)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 555566655554
No 57
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=99.72 E-value=2.5e-17 Score=156.87 Aligned_cols=137 Identities=17% Similarity=0.176 Sum_probs=107.9
Q ss_pred HHHHHHHHHHHhhcCCCCCCcEEEEeCchHHHHHHHHHHhcc--C---------------------------CceEEEec
Q 028124 35 KMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNL--A---------------------------DISFSSLH 85 (213)
Q Consensus 35 K~~~L~~ll~~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~--~---------------------------~~~~~~lh 85 (213)
+.+.+.+.++ +++++||||++++.++.++..|... . ...+..+|
T Consensus 231 ~~~~~~~~~~-------~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~v~~~h 303 (702)
T 2p6r_A 231 FEELVEECVA-------ENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHH 303 (702)
T ss_dssp HHHHHHHHHH-------TTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEEC
T ss_pred HHHHHHHHHh-------cCCCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHHhcCeEEec
Confidence 4555555543 3689999999999999999998742 0 02477899
Q ss_pred CCCCHHHHHHHHHHHhcccccccccccccCCCCCcCCCCCCceeEEEEeCCCCCcCcCCCCCCCCCEEEE----ec---C
Q 028124 86 SDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLIN----YE---L 158 (213)
Q Consensus 86 g~~~~~~R~~~l~~Fr~g~~~~~~~~~~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~rGld~~~v~~VI~----yd---~ 158 (213)
|+|++++|..+++.|++|. +++||||++ +++|+|+|++++||+ || .
T Consensus 304 ~~l~~~~R~~v~~~f~~g~-----------------------~~vlvaT~~----l~~Gidip~~~~VI~~~~~yd~~~~ 356 (702)
T 2p6r_A 304 AGLLNGQRRVVEDAFRRGN-----------------------IKVVVATPT----LAAGVNLPARRVIVRSLYRFDGYSK 356 (702)
T ss_dssp TTSCHHHHHHHHHHHHTTS-----------------------CCEEEECST----TTSSSCCCBSEEEECCSEEESSSEE
T ss_pred CCCCHHHHHHHHHHHHCCC-----------------------CeEEEECcH----HhccCCCCceEEEEcCceeeCCCCC
Confidence 9999999999999999985 999999999 999999999999999 77 7
Q ss_pred CCChHHHHHhhccccC----CCCeEEEEEeCchhHHHHHHHHHhcccccccCc
Q 028124 159 PTKKETYIRRMTTCLA----ADGSVINIVVGGEVVTLRSMEESLGLIVAEVPI 207 (213)
Q Consensus 159 P~~~~~yi~R~GR~~~----~~g~~i~~~~~~e~~~~~~le~~l~~~~~~~~~ 207 (213)
|.+..+|.||+||+|+ ..|.|+.+++..+.. ..+++++....+++..
T Consensus 357 ~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~~~--~~~~~~l~~~~e~~~s 407 (702)
T 2p6r_A 357 RIKVSEYKQMAGRAGRPGMDERGEAIIIVGKRDRE--IAVKRYIFGEPERITS 407 (702)
T ss_dssp ECCHHHHHHHHTTBSCTTTCSCEEEEEECCGGGHH--HHHHTTTSSCCCCCCC
T ss_pred cCCHHHHHHHhhhcCCCCCCCCceEEEEecCccHH--HHHHHHhcCCCCCcee
Confidence 8999999999999864 368999999887632 2233444444444433
No 58
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=99.72 E-value=2.3e-17 Score=164.65 Aligned_cols=116 Identities=19% Similarity=0.192 Sum_probs=94.4
Q ss_pred CCCCcEEEEeCchHHHHHHHHHHhccCCce---------------------------------------EEEecCCCCHH
Q 028124 51 RPGLPMIVCCSSRDELDAVCSAVSNLADIS---------------------------------------FSSLHSDLAET 91 (213)
Q Consensus 51 ~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~---------------------------------------~~~lhg~~~~~ 91 (213)
....++||||+++..|+.++..|...+ +. +..+||+|++.
T Consensus 439 ~~~~~vIVF~~sr~~~e~la~~L~~~~-~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gV~~~Hg~l~~~ 517 (1108)
T 3l9o_A 439 KKYNPVIVFSFSKRDCEELALKMSKLD-FNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPI 517 (1108)
T ss_dssp TTCCCEEEEESCHHHHHHHHHHTCSHH-HHCC----CHHHHGGGSCTHHHHHTTCCHHHHHHTHHHHHTEEEECSCSCHH
T ss_pred cCCCCEEEEeCcHHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHhhhcCeeeecCCCCHH
Confidence 456799999999999999999986532 11 78999999999
Q ss_pred HHHHHHHHHhcccccccccccccCCCCCcCCCCCCceeEEEEeCCCCCcCcCCCCCCCCCEEEEecCCC--------ChH
Q 028124 92 ERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPT--------KKE 163 (213)
Q Consensus 92 ~R~~~l~~Fr~g~~~~~~~~~~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~rGld~~~v~~VI~yd~P~--------~~~ 163 (213)
+|..+++.|++|. ++|||||++ +++|+|+|++++||+|+.|+ ++.
T Consensus 518 ~R~~v~~~F~~G~-----------------------ikVLVAT~v----la~GIDiP~v~~VI~~~~~~d~~~~r~iS~~ 570 (1108)
T 3l9o_A 518 LKEVIEILFQEGF-----------------------LKVLFATET----FSIGLNMPAKTVVFTSVRKWDGQQFRWVSGG 570 (1108)
T ss_dssp HHHHHHHHHHHTC-----------------------CCEEEEESC----CCSCCCC--CEEEESCSEEESSSCEEECCHH
T ss_pred HHHHHHHHHhCCC-----------------------CeEEEECcH----HhcCCCCCCceEEEecCcccCccccccCCHH
Confidence 9999999999985 999999999 99999999999999877644 667
Q ss_pred HHHHhhccccC----CCCeEEEEEeCc-hhHHHHHH
Q 028124 164 TYIRRMTTCLA----ADGSVINIVVGG-EVVTLRSM 194 (213)
Q Consensus 164 ~yi~R~GR~~~----~~g~~i~~~~~~-e~~~~~~l 194 (213)
.|+||+||+|+ ..|.|+.++.+. +...+..+
T Consensus 571 eyiQr~GRAGR~G~d~~G~~ill~~~~~~~~~~~~l 606 (1108)
T 3l9o_A 571 EYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGM 606 (1108)
T ss_dssp HHHHHHHHSCCSSSCSSEEEEEEECCCCCHHHHHHH
T ss_pred HHHHhhcccCCCCCCCceEEEEEecCCcCHHHHHHH
Confidence 89999999753 358888888765 33333333
No 59
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=99.71 E-value=1.4e-17 Score=151.33 Aligned_cols=99 Identities=11% Similarity=0.037 Sum_probs=89.1
Q ss_pred CCcEEEEeCchHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhcccccccccccccCCCCCcCCCCCCceeEEE
Q 028124 53 GLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIV 132 (213)
Q Consensus 53 ~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~~~~~~~~~~~~~~~~~~~~~~~~iLV 132 (213)
.+++||||++++.++.+++.|+..+ +.+..+||++. .+++++|++|+ .++||
T Consensus 188 ~~~~lVF~~s~~~a~~l~~~L~~~g-~~~~~lh~~~~----~~~~~~f~~g~-----------------------~~vLV 239 (451)
T 2jlq_A 188 QGKTVWFVPSIKAGNDIANCLRKSG-KRVIQLSRKTF----DTEYPKTKLTD-----------------------WDFVV 239 (451)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHTTT-CCEEEECTTTH----HHHGGGGGSSC-----------------------CSEEE
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHcC-CeEEECCHHHH----HHHHHhhccCC-----------------------ceEEE
Confidence 5699999999999999999999987 89999999753 57899999985 99999
Q ss_pred EeCCCCCcCcCCCCCCCCCEEEEec--------------------CCCChHHHHHhhcccc--CC-CCeEEEEEe
Q 028124 133 VTDACLPLLSSGESAISARVLINYE--------------------LPTKKETYIRRMTTCL--AA-DGSVINIVV 184 (213)
Q Consensus 133 ~Td~~~~~~~rGld~~~v~~VI~yd--------------------~P~~~~~yi~R~GR~~--~~-~g~~i~~~~ 184 (213)
||++ +++|+|+|+ ++||||| .|.+.++|+||+||+| |+ .|.++.|..
T Consensus 240 aT~v----~~~GiDip~-~~VI~~~~~~~~~~d~~~~~~l~~~~~~p~s~~~y~Qr~GRaGR~g~~~g~~~~~~~ 309 (451)
T 2jlq_A 240 TTDI----SEMGANFRA-GRVIDPRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSG 309 (451)
T ss_dssp ECGG----GGSSCCCCC-SEEEECCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECS
T ss_pred ECCH----HHhCcCCCC-CEEEECCCcccccccccccceeeecccccCCHHHHHHhccccCCCCCCCccEEEEeC
Confidence 9999 999999999 9999999 9999999999999974 44 678888864
No 60
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=99.71 E-value=5.5e-18 Score=161.03 Aligned_cols=120 Identities=19% Similarity=0.241 Sum_probs=100.0
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhcccccccccccccCCCCCcCCCCCCceeEE
Q 028124 52 PGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMI 131 (213)
Q Consensus 52 ~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~~~~~~~~~~~~~~~~~~~~~~~~iL 131 (213)
..+++||||++++.++.+++.|+..+ +.+..+||+|++++ |+++ ..++|
T Consensus 395 ~~~~vLVFv~Tr~~ae~la~~L~~~g-~~v~~lHG~l~q~e-------r~~~-----------------------~~~VL 443 (666)
T 3o8b_A 395 RGGRHLIFCHSKKKCDELAAKLSGLG-INAVAYYRGLDVSV-------IPTI-----------------------GDVVV 443 (666)
T ss_dssp SSSEEEEECSCHHHHHHHHHHHHTTT-CCEEEECTTSCGGG-------SCSS-----------------------SCEEE
T ss_pred cCCcEEEEeCCHHHHHHHHHHHHhCC-CcEEEecCCCCHHH-------HHhC-----------------------CCcEE
Confidence 56899999999999999999999987 89999999999875 3444 26999
Q ss_pred EEeCCCCCcCcCCCCCCCCCEEE----------Eec-----------CCCChHHHHHhhcccc-CCCCeEEEEEeCchhH
Q 028124 132 VVTDACLPLLSSGESAISARVLI----------NYE-----------LPTKKETYIRRMTTCL-AADGSVINIVVGGEVV 189 (213)
Q Consensus 132 V~Td~~~~~~~rGld~~~v~~VI----------~yd-----------~P~~~~~yi~R~GR~~-~~~g~~i~~~~~~e~~ 189 (213)
||||+ ++||+|++ +++|| ||| +|.+.++|+||+||+| ++.|. +.|+++.+..
T Consensus 444 VATdV----aerGIDId-V~~VI~~Gl~~~~ViNyDydP~~gl~~~~~P~s~~syiQRiGRtGRg~~G~-i~lvt~~e~~ 517 (666)
T 3o8b_A 444 VATDA----LMTGYTGD-FDSVIDCNTCVTQTVDFSLDPTFTIETTTVPQDAVSRSQRRGRTGRGRRGI-YRFVTPGERP 517 (666)
T ss_dssp EECTT----HHHHCCCC-BSEEEECCEEEEEEEECCCSSSCEEEEEEEECBHHHHHHHHTTBCSSSCEE-EEESCCCCBC
T ss_pred EECCh----HHccCCCC-CcEEEecCcccccccccccccccccccccCcCCHHHHHHHhccCCCCCCCE-EEEEecchhh
Confidence 99999 99999986 99988 788 9999999999999976 45588 9999877655
Q ss_pred H--H--HHHHHHhcccccccCcc
Q 028124 190 T--L--RSMEESLGLIVAEVPIN 208 (213)
Q Consensus 190 ~--~--~~le~~l~~~~~~~~~~ 208 (213)
. + ..+++..+..+.+..++
T Consensus 518 ~~~l~~~~i~~~~~~~~~~~~l~ 540 (666)
T 3o8b_A 518 SGMFDSSVLCECYDAGCAWYELT 540 (666)
T ss_dssp SSBCCHHHHHHHHHHHHHTSCCC
T ss_pred cccccHHHHHHHhcCCcccccCC
Confidence 4 3 67777776666655544
No 61
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=99.70 E-value=1.2e-16 Score=152.50 Aligned_cols=117 Identities=16% Similarity=0.248 Sum_probs=97.3
Q ss_pred CcEEEEeCchHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhcccccccccccccCCCCCcCCCCCCceeEEEE
Q 028124 54 LPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVV 133 (213)
Q Consensus 54 ~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~~~~~~~~~~~~~~~~~~~~~~~~iLV~ 133 (213)
...||||++++.++.+++.|...+ +.+..+||+|++++|.++++.|++++ ++.+||||
T Consensus 321 ~g~iIf~~s~~~ie~la~~L~~~g-~~v~~lHG~L~~~~R~~~~~~F~~~~---------------------g~~~VLVA 378 (677)
T 3rc3_A 321 PGDCIVCFSKNDIYSVSRQIEIRG-LESAVIYGSLPPGTKLAQAKKFNDPN---------------------DPCKILVA 378 (677)
T ss_dssp TTEEEECSSHHHHHHHHHHHHHTT-CCCEEECTTSCHHHHHHHHHHHHCTT---------------------SSCCEEEE
T ss_pred CCCEEEEcCHHHHHHHHHHHHhcC-CCeeeeeccCCHHHHHHHHHHHHccC---------------------CCeEEEEe
Confidence 455899999999999999999887 89999999999999999999999822 24999999
Q ss_pred eCCCCCcCcCCCCCCCCCEEEEecC--------------CCChHHHHHhhccccCCC-----CeEEEEEeCchhHHHHHH
Q 028124 134 TDACLPLLSSGESAISARVLINYEL--------------PTKKETYIRRMTTCLAAD-----GSVINIVVGGEVVTLRSM 194 (213)
Q Consensus 134 Td~~~~~~~rGld~~~v~~VI~yd~--------------P~~~~~yi~R~GR~~~~~-----g~~i~~~~~~e~~~~~~l 194 (213)
|++ +++|+|+ ++++||+|++ |.+.++|+||+||+|+.. |.|+.+ ...+...+.++
T Consensus 379 Tdi----~e~GlDi-~v~~VI~~~~~k~~~~~~G~~~~~p~s~~~~~QR~GRAGR~g~~g~~G~v~~l-~~~d~~~~~~~ 452 (677)
T 3rc3_A 379 TDA----IGMGLNL-SIRRIIFYSLIKPSINEKGERELEPITTSQALQIAGRAGRFSSRFKEGEVTTM-NHEDLSLLKEI 452 (677)
T ss_dssp CGG----GGSSCCC-CBSEEEESCSBC-----------CBCCHHHHHHHHTTBTCTTSSCSSEEEEES-STTHHHHHHHH
T ss_pred CcH----HHCCcCc-CccEEEECCccccccccCCccccccCCHHHHHHHhcCCCCCCCCCCCEEEEEE-ecchHHHHHHH
Confidence 999 9999999 9999999999 889999999999975433 555555 44455555555
Q ss_pred HHHh
Q 028124 195 EESL 198 (213)
Q Consensus 195 e~~l 198 (213)
....
T Consensus 453 ~~~~ 456 (677)
T 3rc3_A 453 LKRP 456 (677)
T ss_dssp HHSC
T ss_pred HhcC
Confidence 4433
No 62
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=99.69 E-value=1.5e-16 Score=153.88 Aligned_cols=140 Identities=17% Similarity=0.219 Sum_probs=120.2
Q ss_pred chHHHHHHHHHHHhhcCCCCCCcEEEEeCchHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhccccccccccc
Q 028124 33 QFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVT 112 (213)
Q Consensus 33 ~~K~~~L~~ll~~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~~~~~~~ 112 (213)
..|+..|.++|..+. ..+.++||||+....++.|...|...| +.+..+||+++..+|.+++++|+++.
T Consensus 555 s~K~~~L~~lL~~~~---~~g~kvLIFsq~~~~ld~L~~~L~~~g-~~~~~i~G~~~~~eR~~~i~~F~~~~-------- 622 (800)
T 3mwy_W 555 SGKMVLLDQLLTRLK---KDGHRVLIFSQMVRMLDILGDYLSIKG-INFQRLDGTVPSAQRRISIDHFNSPD-------- 622 (800)
T ss_dssp CHHHHHHHHHHHHHT---TTTCCEEEEESCHHHHHHHHHHHHHHT-CCCEEESTTSCHHHHHHHHHTTSSTT--------
T ss_pred ChHHHHHHHHHHHHh---hCCCeEEEEechHHHHHHHHHHHHhCC-CCEEEEeCCCCHHHHHHHHHHhhCCC--------
Confidence 349999999998853 367899999999999999999999887 89999999999999999999999864
Q ss_pred ccCCCCCcCCCCCCceeEEEEeCCCCCcCcCCCCCCCCCEEEEecCCCChHHHHHhhcccc--CC--CCeEEEEEeCc--
Q 028124 113 EQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCL--AA--DGSVINIVVGG-- 186 (213)
Q Consensus 113 ~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~rGld~~~v~~VI~yd~P~~~~~yi~R~GR~~--~~--~g~~i~~~~~~-- 186 (213)
++...+|++|.+ ++.|+|++.+++||+||+||++..++||+||+. |+ ...++.|++.+
T Consensus 623 ------------~~~~v~LlSt~a----gg~GlNL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrlv~~~Ti 686 (800)
T 3mwy_W 623 ------------SNDFVFLLSTRA----GGLGINLMTADTVVIFDSDWNPQADLQAMARAHRIGQKNHVMVYRLVSKDTV 686 (800)
T ss_dssp ------------CSCCCEEEEHHH----HTTTCCCTTCCEEEESSCCSCSHHHHHHHTTTSCSSCCSCEEEEEEEETTSH
T ss_pred ------------CCceEEEEeccc----ccCCCCccccceEEEecCCCChhhHHHHHHHHHhcCCCceEEEEEEecCCCH
Confidence 112469999999 999999999999999999999999999999963 33 36778888876
Q ss_pred hhHHHHHHHHHhcc
Q 028124 187 EVVTLRSMEESLGL 200 (213)
Q Consensus 187 e~~~~~~le~~l~~ 200 (213)
|...++..++.+..
T Consensus 687 Ee~i~~~~~~K~~l 700 (800)
T 3mwy_W 687 EEEVLERARKKMIL 700 (800)
T ss_dssp HHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHH
Confidence 66777777776643
No 63
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=99.69 E-value=7.3e-17 Score=147.39 Aligned_cols=108 Identities=10% Similarity=0.084 Sum_probs=94.3
Q ss_pred HHHHHHHHHHHhhcCCCCCCcEEEEeCchHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhccccccccccccc
Q 028124 35 KMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQ 114 (213)
Q Consensus 35 K~~~L~~ll~~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~~~~~~~~~ 114 (213)
|.+.+.+++..... ..+.++||||+ ...++.+++.|...+ ..+..+||+|++.+|.+++++|++|+
T Consensus 332 ~~~~l~~~l~~~~~--~~~~~~ivf~~-~~~~~~l~~~L~~~~-~~v~~~~g~~~~~~r~~i~~~f~~g~---------- 397 (510)
T 2oca_A 332 RNKWIAKLAIKLAQ--KDENAFVMFKH-VSHGKAIFDLIKNEY-DKVYYVSGEVDTETRNIMKTLAENGK---------- 397 (510)
T ss_dssp HHHHHHHHHHHHHT--TTCEEEEEESS-HHHHHHHHHHHHTTC-SSEEEESSSTTHHHHHHHHHHHHHCC----------
T ss_pred HHHHHHHHHHHHHh--cCCCeEEEEec-HHHHHHHHHHHHHcC-CCeEEEECCCCHHHHHHHHHHHhCCC----------
Confidence 55667777766432 34567777777 888999999999887 59999999999999999999999985
Q ss_pred CCCCCcCCCCCCceeEEEEe-CCCCCcCcCCCCCCCCCEEEEecCCCChHHHHHhhcccc
Q 028124 115 SGDESETGKDEHKSHMIVVT-DACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCL 173 (213)
Q Consensus 115 ~~~~~~~~~~~~~~~iLV~T-d~~~~~~~rGld~~~v~~VI~yd~P~~~~~yi~R~GR~~ 173 (213)
.++|||| ++ +++|+|+|++++||++++|+++..|+||+||++
T Consensus 398 -------------~~vLv~T~~~----~~~GiDip~v~~vi~~~~~~s~~~~~Q~~GR~g 440 (510)
T 2oca_A 398 -------------GIIIVASYGV----FSTGISVKNLHHVVLAHGVKSKIIVLQTIGRVL 440 (510)
T ss_dssp -------------SCEEEEEHHH----HHHSCCCCSEEEEEESSCCCSCCHHHHHHHHHH
T ss_pred -------------CCEEEEEcCh----hhcccccccCcEEEEeCCCCCHHHHHHHHhccc
Confidence 8999999 99 999999999999999999999999999999963
No 64
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=99.68 E-value=1.3e-16 Score=157.74 Aligned_cols=135 Identities=16% Similarity=0.203 Sum_probs=106.4
Q ss_pred EEEEecCcchHHHHHHHHHHHhhcCCCCCCcEEEEeCchHHHHHHHHHHhccCCc-------------------------
Q 028124 25 FYVAVDRLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADI------------------------- 79 (213)
Q Consensus 25 ~~~~~~~~~~K~~~L~~ll~~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~------------------------- 79 (213)
++...... .++..|.+.+.. ....++||||++++.|+.++..|...+ +
T Consensus 314 ~~~~~~~~-~~~~~li~~l~~-----~~~~~~IVF~~sr~~~e~la~~L~~~~-~~~~~e~~~i~~~~~~~~~~l~~~d~ 386 (997)
T 4a4z_A 314 FTQDGPSK-KTWPEIVNYLRK-----RELLPMVVFVFSKKRCEEYADWLEGIN-FCNNKEKSQIHMFIEKSITRLKKEDR 386 (997)
T ss_dssp ---CCCCT-THHHHHHHHHHH-----TTCCSEEEECSCHHHHHHHHHTTTTCC-CCCHHHHHHHHHHHHHHHTTSCHHHH
T ss_pred ccccccch-hHHHHHHHHHHh-----CCCCCEEEEECCHHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHHHHHhcchhhh
Confidence 33333443 478888888876 456899999999999999999997654 3
Q ss_pred --------------eEEEecCCCCHHHHHHHHHHHhcccccccccccccCCCCCcCCCCCCceeEEEEeCCCCCcCcCCC
Q 028124 80 --------------SFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGE 145 (213)
Q Consensus 80 --------------~~~~lhg~~~~~~R~~~l~~Fr~g~~~~~~~~~~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~rGl 145 (213)
.+..+||+|++.+|..+++.|+.|. ++|||||++ +++|+
T Consensus 387 ~l~~~~~l~~~l~~gi~~~H~gl~~~~R~~v~~~F~~G~-----------------------~kVLvAT~~----~a~GI 439 (997)
T 4a4z_A 387 DLPQILKTRSLLERGIAVHHGGLLPIVKELIEILFSKGF-----------------------IKVLFATET----FAMGL 439 (997)
T ss_dssp TCHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTC-----------------------CSEEEECTH----HHHSC
T ss_pred cchhHHHHHHHhhcCeeeecCCCCHHHHHHHHHHHHCCC-----------------------CcEEEEchH----hhCCC
Confidence 3789999999999999999999985 999999999 99999
Q ss_pred CCCCCCEEEEecCCC---------ChHHHHHhhccccC----CCCeEEEEEe--CchhHHHHHH
Q 028124 146 SAISARVLINYELPT---------KKETYIRRMTTCLA----ADGSVINIVV--GGEVVTLRSM 194 (213)
Q Consensus 146 d~~~v~~VI~yd~P~---------~~~~yi~R~GR~~~----~~g~~i~~~~--~~e~~~~~~l 194 (213)
|+|+ ..||++++|. +...|+||+||+|+ ..|.||.++. ..+...++.+
T Consensus 440 DiP~-~~VVi~~~~k~dg~~~~~~s~~~y~Qr~GRAGR~G~~~~G~vi~l~~~~~~~~~~~~~~ 502 (997)
T 4a4z_A 440 NLPT-RTVIFSSIRKHDGNGLRELTPGEFTQMAGRAGRRGLDSTGTVIVMAYNSPLSIATFKEV 502 (997)
T ss_dssp CCCC-SEEEESCSEEEETTEEEECCHHHHHHHHGGGCCTTTCSSEEEEEECCSSCCCHHHHHHH
T ss_pred CCCC-ceEEEeccccccCccCCCCCHHHHhHHhcccccCCCCcceEEEEecCCCcchHHHHHHH
Confidence 9999 5566555555 99999999999865 3578888873 2344455444
No 65
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=99.68 E-value=1.8e-16 Score=147.77 Aligned_cols=99 Identities=13% Similarity=0.161 Sum_probs=83.8
Q ss_pred CCCCcEEEEeCchHHHHHHHHHHhccC-------CceEEEecCCCCHHHHHHHHHHHhcccccccccccccCCCCCcCCC
Q 028124 51 RPGLPMIVCCSSRDELDAVCSAVSNLA-------DISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGK 123 (213)
Q Consensus 51 ~~~~~~IIF~~~~~~~~~l~~~L~~~~-------~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~~~~~~~~~~~~~~~~~~ 123 (213)
....++||||+++++|+.+++.|...+ .-.+..+||++++ +|.+++++|++++.
T Consensus 437 ~~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~i~g~~~~-~r~~~l~~F~~~~~------------------ 497 (590)
T 3h1t_A 437 DRFAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVARVTSEEGK-IGKGHLSRFQELET------------------ 497 (590)
T ss_dssp CTTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEECSSTTHH-HHHHHHHHHHCTTC------------------
T ss_pred CCCccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEEEeCCChH-HHHHHHHHHhCCCC------------------
Confidence 456899999999999999999997652 0137889999864 79999999999740
Q ss_pred CCCceeEEEEeCCCCCcCcCCCCCCCCCEEEEecCCCChHHHHHhhccccC
Q 028124 124 DEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLA 174 (213)
Q Consensus 124 ~~~~~~iLV~Td~~~~~~~rGld~~~v~~VI~yd~P~~~~~yi~R~GR~~~ 174 (213)
+...+||||++ +++|+|+|++++||+|++|++...|+||+||+++
T Consensus 498 --~~~~ilvtt~~----l~~GiDip~v~~Vi~~~~~~s~~~~~Q~iGR~~R 542 (590)
T 3h1t_A 498 --STPVILTTSQL----LTTGVDAPTCKNVVLARVVNSMSEFKQIVGRGTR 542 (590)
T ss_dssp --CCCCEEEESST----TTTTCCCTTEEEEEEESCCCCHHHHHHHHTTSCC
T ss_pred --CCCEEEEECCh----hhcCccchheeEEEEEecCCChHHHHHHHhhhcc
Confidence 01238999999 9999999999999999999999999999999744
No 66
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=99.67 E-value=1.8e-17 Score=160.19 Aligned_cols=122 Identities=11% Similarity=0.132 Sum_probs=99.6
Q ss_pred HHHHHHHHHHHhhcCCCCCCcEEEEeCch--------HHHHHHHHHHhc-c-CCceEEEecCCCCHHHHHHHHHHHhccc
Q 028124 35 KMETLVELLHLVVAGRRPGLPMIVCCSSR--------DELDAVCSAVSN-L-ADISFSSLHSDLAETERTLILEEFRHTA 104 (213)
Q Consensus 35 K~~~L~~ll~~~~~~~~~~~~~IIF~~~~--------~~~~~l~~~L~~-~-~~~~~~~lhg~~~~~~R~~~l~~Fr~g~ 104 (213)
+...+.+.+... ...+.+++|||++. ..++.+++.|.. . +++.+..+||+|++++|..++++|++|+
T Consensus 563 ~~~~l~~~i~~~---l~~g~qvlVf~~~ie~se~l~~~~a~~l~~~L~~~~~~~~~v~~lHG~m~~~eR~~v~~~F~~G~ 639 (780)
T 1gm5_A 563 RVNEVYEFVRQE---VMRGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRVMLEFAEGR 639 (780)
T ss_dssp THHHHHHHHHHH---TTTSCCBCCBCCCC--------CHHHHHHHSGGGSCC---CBCCCCSSSCCSCSHHHHHHHTTTS
T ss_pred hHHHHHHHHHHH---HhcCCcEEEEecchhhhhhhhHHHHHHHHHHHHhhhcCCCcEEEEeCCCCHHHHHHHHHHHHCCC
Confidence 334444555432 23578999999965 457889999987 2 2378999999999999999999999985
Q ss_pred ccccccccccCCCCCcCCCCCCceeEEEEeCCCCCcCcCCCCCCCCCEEEEecCCC-ChHHHHHhhccc--cCCCCeEEE
Q 028124 105 MKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPT-KKETYIRRMTTC--LAADGSVIN 181 (213)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~rGld~~~v~~VI~yd~P~-~~~~yi~R~GR~--~~~~g~~i~ 181 (213)
.+|||||++ +++|+|+|++++||+||.|+ +.+.|.||+||+ +|+.|.|+.
T Consensus 640 -----------------------~~ILVaT~v----ie~GIDiP~v~~VIi~d~~r~~l~~l~Qr~GRaGR~g~~g~~il 692 (780)
T 1gm5_A 640 -----------------------YDILVSTTV----IEVGIDVPRANVMVIENPERFGLAQLHQLRGRVGRGGQEAYCFL 692 (780)
T ss_dssp -----------------------SSBCCCSSC----CCSCSCCTTCCEEEBCSCSSSCTTHHHHHHHTSCCSSTTCEEEC
T ss_pred -----------------------CeEEEECCC----CCccccCCCCCEEEEeCCCCCCHHHHHHHhcccCcCCCCCEEEE
Confidence 999999999 99999999999999999997 688899999997 467799999
Q ss_pred EEeCc
Q 028124 182 IVVGG 186 (213)
Q Consensus 182 ~~~~~ 186 (213)
++.+.
T Consensus 693 l~~~~ 697 (780)
T 1gm5_A 693 VVGDV 697 (780)
T ss_dssp CCCSC
T ss_pred EECCC
Confidence 98743
No 67
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=99.66 E-value=2.6e-16 Score=142.33 Aligned_cols=98 Identities=8% Similarity=-0.004 Sum_probs=85.8
Q ss_pred CCcEEEEeCchHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhcccccccccccccCCCCCcCCCCCCceeEEE
Q 028124 53 GLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIV 132 (213)
Q Consensus 53 ~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~~~~~~~~~~~~~~~~~~~~~~~~iLV 132 (213)
.+++||||++++.++.+++.|+..+ +.+..+||+ +|.+++++|++|+ .++||
T Consensus 171 ~~~~lVF~~~~~~~~~l~~~L~~~~-~~v~~lhg~----~r~~~~~~f~~g~-----------------------~~vLV 222 (431)
T 2v6i_A 171 DGRTVWFVHSIKQGAEIGTCLQKAG-KKVLYLNRK----TFESEYPKCKSEK-----------------------WDFVI 222 (431)
T ss_dssp SSCEEEECSSHHHHHHHHHHHHHTT-CCEEEESTT----THHHHTTHHHHSC-----------------------CSEEE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHcC-CeEEEeCCc----cHHHHHHhhcCCC-----------------------CeEEE
Confidence 5689999999999999999999886 899999997 5788999999985 99999
Q ss_pred EeCCCCCcCcCCCCCCCCCE-----------------EEEecCCCChHHHHHhhccccCC---CCeEEEEE
Q 028124 133 VTDACLPLLSSGESAISARV-----------------LINYELPTKKETYIRRMTTCLAA---DGSVINIV 183 (213)
Q Consensus 133 ~Td~~~~~~~rGld~~~v~~-----------------VI~yd~P~~~~~yi~R~GR~~~~---~g~~i~~~ 183 (213)
||++ +++|+|+| +.+ ||+|+.|.+.++|+||+||+|+. .|.++.+.
T Consensus 223 aT~v----~e~GiDip-~~~VI~~g~~~~~v~d~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~~~~~~~~ 288 (431)
T 2v6i_A 223 TTDI----SEMGANFK-ADRVIDPRKTIKPILLDGRVSMQGPIAITPASAAQRRGRIGRNPEKLGDIYAYS 288 (431)
T ss_dssp ECGG----GGTSCCCC-CSEEEECCEEEEEEEETTEEEEEEEEECCHHHHHHHHTTSSCCTTCCCCEEEEC
T ss_pred ECch----HHcCcccC-CcEEEecCccccceecccceeecccccCCHHHHHHhhhccCCCCCCCCeEEEEc
Confidence 9999 99999999 544 68999999999999999997543 35556555
No 68
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.49 E-value=1.2e-13 Score=142.87 Aligned_cols=148 Identities=18% Similarity=0.254 Sum_probs=111.5
Q ss_pred CCceEEEEEecCcc--hHHHHHHHHHHHhhcCCCCCCcEEEEeCchHHHHHHHHHHhcc----C----------------
Q 028124 20 SQPRHFYVAVDRLQ--FKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNL----A---------------- 77 (213)
Q Consensus 20 ~~i~~~~~~~~~~~--~K~~~L~~ll~~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~----~---------------- 77 (213)
-.+++.++.+.... .+.+.+.+.+..........+++||||+|++.|+.+|..|... +
T Consensus 282 vpL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~LVF~~sR~~~~~~A~~l~~~~~~~~~~~~~~~~~~~~~~~~ 361 (1724)
T 4f92_B 282 VPLEQTYVGITEKKAIKRFQIMNEIVYEKIMEHAGKNQVLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVL 361 (1724)
T ss_dssp SCEEEECCEECCCCHHHHHHHHHHHHHHHHTTCCSSCCEEEECSSTTTTHHHHHHHHHHHHHTTSTTCCSSCCTTCSSHH
T ss_pred CccEEEEeccCCcchhhhhHHHHHHHHHHHHHHhcCCcEEEECCCHHHHHHHHHHHHHHHhhccchhhhcccchhHHHHH
Confidence 34677766665442 2333444443322222345679999999999999988887532 0
Q ss_pred ----------------CceEEEecCCCCHHHHHHHHHHHhcccccccccccccCCCCCcCCCCCCceeEEEEeCCCCCcC
Q 028124 78 ----------------DISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLL 141 (213)
Q Consensus 78 ----------------~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~~~~~~~~~~~~~~~~~~~~~~~~iLV~Td~~~~~~ 141 (213)
...+..+||+|++++|..+.+.|++|. +++||||+. +
T Consensus 362 ~~~~~~~~~~~l~~~l~~Gva~HHagL~~~~R~~vE~~F~~G~-----------------------i~vlvaTsT----L 414 (1724)
T 4f92_B 362 RTEAEQCKNLELKDLLPYGFAIHHAGMTRVDRTLVEDLFADKH-----------------------IQVLVSTAT----L 414 (1724)
T ss_dssp HHTTSCCSTHHHHHHTTTTEEEECSSSCTHHHHHHHHHHHTTC-----------------------CCEEEECHH----H
T ss_pred HhhhcccccHHHHHHhhcCEEEEcCCCCHHHHHHHHHHHHCCC-----------------------CeEEEEcch----h
Confidence 013788999999999999999999985 999999999 9
Q ss_pred cCCCCCCCCCEEEE----ecC------CCChHHHHHhhccccCC----CCeEEEEEeCchhHHHHHH
Q 028124 142 SSGESAISARVLIN----YEL------PTKKETYIRRMTTCLAA----DGSVINIVVGGEVVTLRSM 194 (213)
Q Consensus 142 ~rGld~~~v~~VI~----yd~------P~~~~~yi~R~GR~~~~----~g~~i~~~~~~e~~~~~~l 194 (213)
+.|+|+|..++||. ||. |-++.+|.||+||+|+. .|.+|.++...+...+..+
T Consensus 415 a~GVNlPa~~vVI~~~~~~~~~~~~~~~ls~~~~~Qm~GRAGR~g~d~~G~~ii~~~~~~~~~~~~l 481 (1724)
T 4f92_B 415 AWGVNLPAHTVIIKGTQVYSPEKGRWTELGALDILQMLGRAGRPQYDTKGEGILITSHGELQYYLSL 481 (1724)
T ss_dssp HHHSCCCBSEEEEECCEEEETTTTEEEECCHHHHHHHHTTBSCTTTCSCEEEEEEEESTTCCHHHHH
T ss_pred HhhCCCCCceEEEeCCEEecCcCCCcccCCHHHHHHhhhhccCCCCCCccEEEEEecchhHHHHHHH
Confidence 99999999999996 654 45899999999998653 5899999988877666554
No 69
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.48 E-value=1.7e-13 Score=141.73 Aligned_cols=117 Identities=19% Similarity=0.252 Sum_probs=97.6
Q ss_pred CCCCcEEEEeCchHHHHHHHHHHhcc----C-----------------------------CceEEEecCCCCHHHHHHHH
Q 028124 51 RPGLPMIVCCSSRDELDAVCSAVSNL----A-----------------------------DISFSSLHSDLAETERTLIL 97 (213)
Q Consensus 51 ~~~~~~IIF~~~~~~~~~l~~~L~~~----~-----------------------------~~~~~~lhg~~~~~~R~~~l 97 (213)
.+.+++||||++++.|+.++..|... . ...+..+||+|++.+|..+.
T Consensus 1153 ~~~~~~lVF~~sR~~~~~~A~~L~~~~~~~~~~~~~~~~~~~~l~~~l~~~~d~~L~~~l~~GIa~hHagL~~~~R~~VE 1232 (1724)
T 4f92_B 1153 SPKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDSTLKETLLNGVGYLHEGLSPMERRLVE 1232 (1724)
T ss_dssp CSSSCEEEEESSHHHHHHHHHHHHHHHHHTTCTTTTBCSCHHHHHHHHTTCCCHHHHHHHHTTEEEECTTSCHHHHHHHH
T ss_pred cCCCCeeeeCCCHHHHHHHHHHHHHHHhhccchhhhhcccHHHHHHHHhhcccHHHHHHHhCCEEEECCCCCHHHHHHHH
Confidence 46789999999999999888776431 0 02378899999999999999
Q ss_pred HHHhcccccccccccccCCCCCcCCCCCCceeEEEEeCCCCCcCcCCCCCCCCCEEEE----e------cCCCChHHHHH
Q 028124 98 EEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLIN----Y------ELPTKKETYIR 167 (213)
Q Consensus 98 ~~Fr~g~~~~~~~~~~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~rGld~~~v~~VI~----y------d~P~~~~~yi~ 167 (213)
+.|++|. +++||||+. +++|+|+|...+||. | ..|.+..+|.|
T Consensus 1233 ~lF~~G~-----------------------i~VLvaT~t----lA~GVnlPa~~VVI~~~~~~dg~~~~~~~~s~~~~~Q 1285 (1724)
T 4f92_B 1233 QLFSSGA-----------------------IQVVVASRS----LCWGMNVAAHLVIIMDTQYYNGKIHAYVDYPIYDVLQ 1285 (1724)
T ss_dssp HHHHHTS-----------------------BCEEEEEGG----GSSSCCCCBSEEEEECSEEEETTTTEEEECCHHHHHH
T ss_pred HHHHCCC-----------------------CeEEEEChH----HHcCCCCCccEEEEecCccccCcccccCCCCHHHHHH
Confidence 9999985 999999999 999999999999993 3 34678999999
Q ss_pred hhccccCC----CCeEEEEEeCchhHHHHHH
Q 028124 168 RMTTCLAA----DGSVINIVVGGEVVTLRSM 194 (213)
Q Consensus 168 R~GR~~~~----~g~~i~~~~~~e~~~~~~l 194 (213)
|+||+|+. .|.|+.++.+.+...++++
T Consensus 1286 m~GRAGR~g~d~~G~avll~~~~~~~~~~~l 1316 (1724)
T 4f92_B 1286 MVGHANRPLQDDEGRCVIMCQGSKKDFFKKF 1316 (1724)
T ss_dssp HHTTBCCTTTCSCEEEEEEEEGGGHHHHHHH
T ss_pred hhccccCCCCCCceEEEEEecchHHHHHHHH
Confidence 99998643 5999999998877666554
No 70
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=99.18 E-value=1.2e-10 Score=115.75 Aligned_cols=106 Identities=9% Similarity=0.128 Sum_probs=85.0
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhccC-----------CceE-EEecCC----------C----------CHH--------
Q 028124 52 PGLPMIVCCSSRDELDAVCSAVSNLA-----------DISF-SSLHSD----------L----------AET-------- 91 (213)
Q Consensus 52 ~~~~~IIF~~~~~~~~~l~~~L~~~~-----------~~~~-~~lhg~----------~----------~~~-------- 91 (213)
.+.++||||+++..|..+++.|...+ .+++ +.+||+ + ++.
T Consensus 536 ~g~kamVf~~S~~~A~~~~~~l~~~~~~~~~~~~~~~~~k~avv~s~~~~~~~~~~G~~~~e~~~~~~~~~~~r~~l~~~ 615 (1038)
T 2w00_A 536 KGFNAMLAVSSVDAAKAYYATFKRLQEEAANKSATYKPLRIATIFSFAANEEQNAIGEISDETFDTSAMDSSAKEFLDAA 615 (1038)
T ss_dssp CCCEEEEEESSHHHHHHHHHHHHHHHHHHTTTSSSCCCCCEEEECCCCC------CCCCCCCCSCGGGSCHHHHHHHHHH
T ss_pred CCCcEEEEECCHHHHHHHHHHHHhhhhhhcccccccccCcEEEEEeCCCccccccccccccccccccccchhHHHHHHHH
Confidence 34689999999999999999997642 1344 556653 2 221
Q ss_pred ---------------------HHHHHHHHHhcccccccccccccCCCCCcCCCCCCceeEEEEeCCCCCcCcCCCCCCCC
Q 028124 92 ---------------------ERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISA 150 (213)
Q Consensus 92 ---------------------~R~~~l~~Fr~g~~~~~~~~~~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~rGld~~~v 150 (213)
+|..++++|++|. +++||+||+ +.+|+|+|.+
T Consensus 616 I~dyn~~f~~~~~~~~~~~~~~R~~i~~~Fk~g~-----------------------i~ILIvvd~----lltGfDiP~l 668 (1038)
T 2w00_A 616 IREYNSHFKTNFSTDSNGFQNYYRDLAQRVKNQD-----------------------IDLLIVVGM----FLTGFDAPTL 668 (1038)
T ss_dssp HHHHHHHHTCCCCSSHHHHHHHHHHHHHHHHTTS-----------------------SSEEEESST----TSSSCCCTTE
T ss_pred HHHHHHHhcccccccchhhhHHHHHHHHHHHcCC-----------------------CeEEEEcch----HHhCcCcccc
Confidence 4788999999985 999999999 9999999999
Q ss_pred CEEEEecCCCChHHHHHhhccccC--C----CCeEEEEEeC
Q 028124 151 RVLINYELPTKKETYIRRMTTCLA--A----DGSVINIVVG 185 (213)
Q Consensus 151 ~~VI~yd~P~~~~~yi~R~GR~~~--~----~g~~i~~~~~ 185 (213)
.++++|.|.+...|+||+||+++ . .|.++.|+..
T Consensus 669 -~tlylDkpl~~~~liQaIGRtnR~~~~~K~~G~IVdf~~~ 708 (1038)
T 2w00_A 669 -NTLFVDKNLRYHGLMQAFSRTNRIYDATKTFGNIVTFRDL 708 (1038)
T ss_dssp -EEEEEESCCCHHHHHHHHHTTCCCCCTTCCSEEEEESSCC
T ss_pred -cEEEEccCCCccceeehhhccCcCCCCCCCcEEEEEcccc
Confidence 78899999999999999999632 1 2788888864
No 71
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=98.28 E-value=2.4e-06 Score=79.14 Aligned_cols=88 Identities=17% Similarity=0.154 Sum_probs=55.9
Q ss_pred HHHHHHHHHhhcCCCCCCcEEEEeCchHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhcccccccccccccCC
Q 028124 37 ETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSG 116 (213)
Q Consensus 37 ~~L~~ll~~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~~~~~~~~~~~ 116 (213)
+.+.+.|..+.. ...+.++||++|...++.+++.|... .+..+|.. .+|.+++++|+.+
T Consensus 370 ~~~~~~l~~~~~--~~~g~~lvff~S~~~~~~v~~~l~~~----~~~~q~~~--~~~~~~l~~f~~~------------- 428 (540)
T 2vl7_A 370 PIYSILLKRIYE--NSSKSVLVFFPSYEMLESVRIHLSGI----PVIEENKK--TRHEEVLELMKTG------------- 428 (540)
T ss_dssp HHHHHHHHHHHH--TCSSEEEEEESCHHHHHHHHTTCTTS----CEEESTTT--CCHHHHHHHHHTS-------------
T ss_pred HHHHHHHHHHHH--hCCCCEEEEeCCHHHHHHHHHHhccC----ceEecCCC--CcHHHHHHHHhcC-------------
Confidence 445555554433 34578999999999999999988653 24556654 4688999999885
Q ss_pred CCCcCCCCCCceeEEE--EeCCCCCcCcCCCCCCC----CCEEEEecCCC
Q 028124 117 DESETGKDEHKSHMIV--VTDACLPLLSSGESAIS----ARVLINYELPT 160 (213)
Q Consensus 117 ~~~~~~~~~~~~~iLV--~Td~~~~~~~rGld~~~----v~~VI~yd~P~ 160 (213)
..+|+ +|+. +++|+|+++ +++||++++|.
T Consensus 429 -----------~~il~~V~~~~----~~EGiD~~~~~~~~~~Vii~~lPf 463 (540)
T 2vl7_A 429 -----------KYLVMLVMRAK----ESEGVEFREKENLFESLVLAGLPY 463 (540)
T ss_dssp -----------CCEEEEEC-------------------CEEEEEEESCCC
T ss_pred -----------CeEEEEEecCc----eecceecCCCcccccEEEEECCCC
Confidence 34555 8899 999999997 89999999995
No 72
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=97.93 E-value=0.00017 Score=63.04 Aligned_cols=119 Identities=10% Similarity=0.122 Sum_probs=84.1
Q ss_pred hHHHHHHHHHHHhhcCCCCCCcEEEEeCchHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhcccccccccccc
Q 028124 34 FKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTE 113 (213)
Q Consensus 34 ~K~~~L~~ll~~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~~~~~~~~ 113 (213)
-|+.+|.++|..+. ..+.+++||++..++.+.+-.+|..++ +...-+.|.....+ .+. .+.
T Consensus 109 GKf~~L~~LL~~l~---~~~~kVLIfsq~t~~LDilE~~l~~~~-~~y~RlDG~~~~~~-~k~----~~~---------- 169 (328)
T 3hgt_A 109 GKFSVLRDLINLVQ---EYETETAIVCRPGRTMDLLEALLLGNK-VHIKRYDGHSIKSA-AAA----NDF---------- 169 (328)
T ss_dssp HHHHHHHHHHHHHT---TSCEEEEEEECSTHHHHHHHHHHTTSS-CEEEESSSCCC------------CC----------
T ss_pred ccHHHHHHHHHHHH---hCCCEEEEEECChhHHHHHHHHHhcCC-CceEeCCCCchhhh-hhc----ccC----------
Confidence 49999999998863 467899999999999999999999887 79999999854432 111 121
Q ss_pred cCCCCCcCCCCCCceeEEEEeCCCCCcCcCCCC-----CCCCCEEEEecCCCChHH-HHHhhccc------cCCCCeEEE
Q 028124 114 QSGDESETGKDEHKSHMIVVTDACLPLLSSGES-----AISARVLINYELPTKKET-YIRRMTTC------LAADGSVIN 181 (213)
Q Consensus 114 ~~~~~~~~~~~~~~~~iLV~Td~~~~~~~rGld-----~~~v~~VI~yd~P~~~~~-yi~R~GR~------~~~~g~~i~ 181 (213)
...+.+.|.+ ..-|++ ...++.||-||.-|++.. .+|.+-|+ -++.-.+|-
T Consensus 170 -------------~~~i~Lltsa----g~~gin~~~~nl~~aD~VI~~DsdwNp~~d~iQa~~r~~R~~~gq~k~v~V~R 232 (328)
T 3hgt_A 170 -------------SCTVHLFSSE----GINFTKYPIKSKARFDMLICLDTTVDTSQKDIQYLLQYKRERKGLERYAPIVR 232 (328)
T ss_dssp -------------SEEEEEEESS----CCCTTTSCCCCCSCCSEEEECSTTCCTTSHHHHHHHCCC---------CCEEE
T ss_pred -------------CceEEEEECC----CCCCcCcccccCCCCCEEEEECCCCCCCChHHHHHHHHhhhccCCCCcceEEE
Confidence 2444444555 566675 789999999999998876 46655442 145678899
Q ss_pred EEeCchh
Q 028124 182 IVVGGEV 188 (213)
Q Consensus 182 ~~~~~e~ 188 (213)
+++.+.+
T Consensus 233 Lvt~~Ti 239 (328)
T 3hgt_A 233 LVAINSI 239 (328)
T ss_dssp EEETTSH
T ss_pred EeCCCCH
Confidence 9987644
No 73
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=97.08 E-value=0.0074 Score=59.19 Aligned_cols=44 Identities=16% Similarity=0.151 Sum_probs=35.2
Q ss_pred EecCcchHHHHHHHHHHHhhcCCCCCCcEEEEeCchHHHHHHHHHHh
Q 028124 28 AVDRLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVS 74 (213)
Q Consensus 28 ~~~~~~~K~~~L~~ll~~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~ 74 (213)
.+.....|+..+.+-+.... ..++|+||+|.|....+.|++.|+
T Consensus 421 vy~t~~~K~~AIv~eI~~~~---~~GqPVLVgT~SIe~SE~LS~~L~ 464 (997)
T 2ipc_A 421 VYRTEKGKFYAVVEEIAEKY---ERGQPVLVGTISIEKSERLSQMLK 464 (997)
T ss_dssp EESSHHHHHHHHHHHHHHHH---HHTCCEEEECSSHHHHHHHHHHHH
T ss_pred EEcCHHHHHHHHHHHHHHHH---HCCCCEEEEeCCHHHHHHHHHHHh
Confidence 34555669998887776532 357999999999999999999998
No 74
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=96.53 E-value=0.0041 Score=58.46 Aligned_cols=77 Identities=23% Similarity=0.190 Sum_probs=54.2
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhcccccccccccccCCCCCcCCCCCCceeEE
Q 028124 52 PGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMI 131 (213)
Q Consensus 52 ~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~~~~~~~~~~~~~~~~~~~~~~~~iL 131 (213)
..+.++||+++....+.+++.|+..+ .+ ...+++..+|.+++++|+ +. -.+|
T Consensus 447 ~~g~~lvlF~Sy~~l~~v~~~l~~~~-~~---~~q~~~~~~~~~ll~~f~-~~-----------------------~~vL 498 (620)
T 4a15_A 447 VKKNTIVYFPSYSLMDRVENRVSFEH-MK---EYRGIDQKELYSMLKKFR-RD-----------------------HGTI 498 (620)
T ss_dssp HCSCEEEEESCHHHHHHHTSSCCSCC-EE---CCTTCCSHHHHHHHHHHT-TS-----------------------CCEE
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHhcc-hh---ccCCCChhHHHHHHHHhc-cC-----------------------CcEE
Confidence 35679999999999999999887322 22 556677778999999999 53 6799
Q ss_pred EEeC--CCCCcCcCCCCCCC--CCEEEEecCCC
Q 028124 132 VVTD--ACLPLLSSGESAIS--ARVLINYELPT 160 (213)
Q Consensus 132 V~Td--~~~~~~~rGld~~~--v~~VI~yd~P~ 160 (213)
+++. . +.+|+|+++ .+.||...+|.
T Consensus 499 ~~v~~gs----f~EGiD~~g~~l~~viI~~lPf 527 (620)
T 4a15_A 499 FAVSGGR----LSEGINFPGNELEMIILAGLPF 527 (620)
T ss_dssp EEETTSC----C--------CCCCEEEESSCCC
T ss_pred EEEecCc----eeccccCCCCceEEEEEEcCCC
Confidence 9985 6 899999985 66899888774
No 75
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=95.42 E-value=0.064 Score=51.79 Aligned_cols=82 Identities=12% Similarity=0.054 Sum_probs=68.7
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhcc----CCceEEEecCCCCHHHHHHHHHHHhcccccccccccccCCCCCcCCCCCCc
Q 028124 52 PGLPMIVCCSSRDELDAVCSAVSNL----ADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHK 127 (213)
Q Consensus 52 ~~~~~IIF~~~~~~~~~l~~~L~~~----~~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~~~~~~~~~~~~~~~~~~~~~~ 127 (213)
.+.+++|.++|+.-+...++.+... + +++..+||+++..+|...++++.+|+
T Consensus 416 ~g~qvlvlaPtr~La~Q~~~~l~~~~~~~g-i~v~~l~G~~~~~~r~~~~~~l~~g~----------------------- 471 (780)
T 1gm5_A 416 AGFQTAFMVPTSILAIQHYRRTVESFSKFN-IHVALLIGATTPSEKEKIKSGLRNGQ----------------------- 471 (780)
T ss_dssp HTSCEEEECSCHHHHHHHHHHHHHHHTCSS-CCEEECCSSSCHHHHHHHHHHHHSSC-----------------------
T ss_pred cCCeEEEEeCcHHHHHHHHHHHHHHhhhcC-ceEEEEeCCCCHHHHHHHHHHHhcCC-----------------------
Confidence 3579999999999888888777643 4 89999999999999999999999985
Q ss_pred eeEEEEeCCCCCcCcCCCCCCCCCEEEEecCCC
Q 028124 128 SHMIVVTDACLPLLSSGESAISARVLINYELPT 160 (213)
Q Consensus 128 ~~iLV~Td~~~~~~~rGld~~~v~~VI~yd~P~ 160 (213)
.+|+|+|... +...+.+.++++||--+...
T Consensus 472 ~~IvVgT~~l---l~~~~~~~~l~lVVIDEaHr 501 (780)
T 1gm5_A 472 IDVVIGTHAL---IQEDVHFKNLGLVIIDEQHR 501 (780)
T ss_dssp CCEEEECTTH---HHHCCCCSCCCEEEEESCCC
T ss_pred CCEEEECHHH---HhhhhhccCCceEEecccch
Confidence 8999999872 56677888999988766554
No 76
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=94.56 E-value=0.19 Score=46.16 Aligned_cols=89 Identities=12% Similarity=0.106 Sum_probs=60.5
Q ss_pred HHHHHHHHHHhhcCCCCCCcEEEEeCchHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhcccccccccccccC
Q 028124 36 METLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQS 115 (213)
Q Consensus 36 ~~~L~~ll~~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~~~~~~~~~~ 115 (213)
.+.+.+.+..+.. ...+.++||+++....+.+++. .+ ..+..-..+++. .++++.|+...
T Consensus 378 ~~~l~~~i~~l~~--~~~g~~lvlF~Sy~~l~~v~~~---~~-~~v~~q~~~~~~---~~~~~~~~~~~----------- 437 (551)
T 3crv_A 378 WKRYADYLLKIYF--QAKANVLVVFPSYEIMDRVMSR---IS-LPKYVESEDSSV---EDLYSAISANN----------- 437 (551)
T ss_dssp HHHHHHHHHHHHH--HCSSEEEEEESCHHHHHHHHTT---CC-SSEEECCSSCCH---HHHHHHTTSSS-----------
T ss_pred HHHHHHHHHHHHH--hCCCCEEEEecCHHHHHHHHHh---cC-CcEEEcCCCCCH---HHHHHHHHhcC-----------
Confidence 4555555554433 2456899999999999999873 23 344443345553 45778886431
Q ss_pred CCCCcCCCCCCceeEEEEe--CCCCCcCcCCCCCC-----CCCEEEEecCCC
Q 028124 116 GDESETGKDEHKSHMIVVT--DACLPLLSSGESAI-----SARVLINYELPT 160 (213)
Q Consensus 116 ~~~~~~~~~~~~~~iLV~T--d~~~~~~~rGld~~-----~v~~VI~yd~P~ 160 (213)
-.+|+++ .. +.+|+|++ .++.||...+|.
T Consensus 438 ------------~~vl~~v~gg~----~~EGiD~~d~~g~~l~~viI~~lPf 473 (551)
T 3crv_A 438 ------------KVLIGSVGKGK----LAEGIELRNNDRSLISDVVIVGIPY 473 (551)
T ss_dssp ------------SCEEEEESSCC----SCCSSCCEETTEESEEEEEEESCCC
T ss_pred ------------CeEEEEEecce----ecccccccccCCcceeEEEEEcCCC
Confidence 4689998 46 89999999 478899877664
No 77
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=94.22 E-value=0.13 Score=44.72 Aligned_cols=85 Identities=12% Similarity=0.155 Sum_probs=65.8
Q ss_pred CCCCcEEEEeCchHHHHHHHHHHhccC--CceEEEecCCCCHHHHHHHHHHHhcccccccccccccCCCCCcCCCCCCce
Q 028124 51 RPGLPMIVCCSSRDELDAVCSAVSNLA--DISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKS 128 (213)
Q Consensus 51 ~~~~~~IIF~~~~~~~~~l~~~L~~~~--~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (213)
..+.++||.++++.-+..+++.++..+ ++++..+||+.+..+|...++.+..+. .
T Consensus 62 ~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~l~~~~-----------------------~ 118 (414)
T 3oiy_A 62 RKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDD-----------------------Y 118 (414)
T ss_dssp TTTCCEEEEESSHHHHHHHHHHHHHHCCSSCCEEECCTTSCHHHHHHHHHHHHHTC-----------------------C
T ss_pred cCCCEEEEEECCHHHHHHHHHHHHHHccCCceEEEEECCCChhhHHHHHHHhhcCC-----------------------C
Confidence 356899999999999999999998741 379999999999999988889998874 8
Q ss_pred eEEEEeCCCCCcCcCCCCCCCCCEEEEecC
Q 028124 129 HMIVVTDACLPLLSSGESAISARVLINYEL 158 (213)
Q Consensus 129 ~iLV~Td~~~~~~~rGld~~~v~~VI~yd~ 158 (213)
+|+|+|+..+-..-+-++..++++||.-+.
T Consensus 119 ~Iiv~Tp~~l~~~l~~~~~~~~~~iViDEa 148 (414)
T 3oiy_A 119 HILVFSTQFVSKNREKLSQKRFDFVFVDDV 148 (414)
T ss_dssp SEEEEEHHHHHHCHHHHTTCCCSEEEESCH
T ss_pred CEEEECHHHHHHHHHHhccccccEEEEeCh
Confidence 899999862110111255668888887554
No 78
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=91.03 E-value=0.95 Score=45.27 Aligned_cols=108 Identities=11% Similarity=0.083 Sum_probs=75.3
Q ss_pred EEEEecCcchHHHHHHHHHHHhhcCCCCCCcEEEEeCchHHHHHHHHHHhccC--CceEEEecCCCCHHHHHHHHHHHhc
Q 028124 25 FYVAVDRLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLA--DISFSSLHSDLAETERTLILEEFRH 102 (213)
Q Consensus 25 ~~~~~~~~~~K~~~L~~ll~~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~--~~~~~~lhg~~~~~~R~~~l~~Fr~ 102 (213)
..+..+...=|-.+..-.+.... ..+.++||.++++.-|..+++.++..+ ++.+..+||+++..+|...++.++.
T Consensus 96 vlv~ApTGSGKTl~~l~~il~~~---~~~~~~Lil~PtreLa~Q~~~~l~~l~~~~i~v~~l~Gg~~~~er~~~~~~l~~ 172 (1104)
T 4ddu_A 96 FTMVAPTGVGKTTFGMMTALWLA---RKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEE 172 (1104)
T ss_dssp EEECCSTTCCHHHHHHHHHHHHH---TTTCCEEEEESSHHHHHHHHHHHHTTSCTTSCEEEECTTCCTTHHHHHHHHHHT
T ss_pred EEEEeCCCCcHHHHHHHHHHHHH---hcCCeEEEEechHHHHHHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHHhC
Confidence 34444443336554433332222 356899999999999999999998832 2789999999999899999999998
Q ss_pred ccccccccccccCCCCCcCCCCCCceeEEEEeCCCCCcCcCCCCCCCCCEEEEecC
Q 028124 103 TAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYEL 158 (213)
Q Consensus 103 g~~~~~~~~~~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~rGld~~~v~~VI~yd~ 158 (213)
+. .+|+|+|+-.+-..-.-+++.++++||.-+.
T Consensus 173 g~-----------------------~~IlV~Tp~rL~~~l~~l~~~~l~~lViDEa 205 (1104)
T 4ddu_A 173 DD-----------------------YHILVFSTQFVSKNREKLSQKRFDFVFVDDV 205 (1104)
T ss_dssp SC-----------------------CSEEEEEHHHHHHSHHHHHTSCCSEEEESCH
T ss_pred CC-----------------------CCEEEECHHHHHHHHHhhcccCcCEEEEeCC
Confidence 74 8999999852100011145678888887554
No 79
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=90.34 E-value=1.9 Score=34.85 Aligned_cols=104 Identities=14% Similarity=0.164 Sum_probs=64.8
Q ss_pred EEEEecCcchHHHH-HHHHHHHhhcCCCCCCcEEEEeCchHHHHHHHHHHhcc----CCceEEEecCCCCHHHHHHHHHH
Q 028124 25 FYVAVDRLQFKMET-LVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNL----ADISFSSLHSDLAETERTLILEE 99 (213)
Q Consensus 25 ~~~~~~~~~~K~~~-L~~ll~~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~----~~~~~~~lhg~~~~~~R~~~l~~ 99 (213)
.++..+...=|-.. +.-++..+.. .....++||.++++.-+..+++.++.. + +.+..++|+.+..++...
T Consensus 83 ~lv~a~TGsGKT~~~~~~il~~l~~-~~~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~--- 157 (249)
T 3ber_A 83 IIGLAETGSGKTGAFALPILNALLE-TPQRLFALVLTPTRELAFQISEQFEALGSSIG-VQSAVIVGGIDSMSQSLA--- 157 (249)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHHHH-SCCSSCEEEECSSHHHHHHHHHHHHHHHGGGT-CCEEEECTTSCHHHHHHH---
T ss_pred EEEEcCCCCCchhHhHHHHHHHHhc-CCCCceEEEEeCCHHHHHHHHHHHHHHhccCC-eeEEEEECCCChHHHHHH---
Confidence 44444444335543 3334443322 234568999999999999888777654 4 788999999876554332
Q ss_pred HhcccccccccccccCCCCCcCCCCCCceeEEEEeCCCCCc-C--cCCCCCCCCCEEEEec
Q 028124 100 FRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPL-L--SSGESAISARVLINYE 157 (213)
Q Consensus 100 Fr~g~~~~~~~~~~~~~~~~~~~~~~~~~~iLV~Td~~~~~-~--~rGld~~~v~~VI~yd 157 (213)
...+ .+|+|+|...+-. + ..++++..+++||.-+
T Consensus 158 ~~~~------------------------~~I~v~Tp~~l~~~l~~~~~~~l~~~~~lViDE 194 (249)
T 3ber_A 158 LAKK------------------------PHIIIATPGRLIDHLENTKGFNLRALKYLVMDE 194 (249)
T ss_dssp HHTC------------------------CSEEEECHHHHHHHHHHSTTCCCTTCCEEEECS
T ss_pred hcCC------------------------CCEEEECHHHHHHHHHcCCCcCccccCEEEEcC
Confidence 2332 7899999641100 1 2456788888888644
No 80
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=89.98 E-value=1.8 Score=43.51 Aligned_cols=80 Identities=16% Similarity=0.087 Sum_probs=66.1
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhcc----CCceEEEecCCCCHHHHHHHHHHHhcccccccccccccCCCCCcCCCCCCc
Q 028124 52 PGLPMIVCCSSRDELDAVCSAVSNL----ADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHK 127 (213)
Q Consensus 52 ~~~~~IIF~~~~~~~~~l~~~L~~~----~~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~~~~~~~~~~~~~~~~~~~~~~ 127 (213)
.+.+++|.|+|+.-+...++.+... + +.+..++|..+..++...++.+..|.
T Consensus 651 ~g~~vlvlvPt~~La~Q~~~~~~~~~~~~~-i~v~~l~~~~~~~~~~~~~~~l~~g~----------------------- 706 (1151)
T 2eyq_A 651 NHKQVAVLVPTTLLAQQHYDNFRDRFANWP-VRIEMISRFRSAKEQTQILAEVAEGK----------------------- 706 (1151)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHHSTTTT-CCEEEESTTSCHHHHHHHHHHHHTTC-----------------------
T ss_pred hCCeEEEEechHHHHHHHHHHHHHHhhcCC-CeEEEEeCCCCHHHHHHHHHHHhcCC-----------------------
Confidence 4679999999999998888887643 4 78999999999999999999999984
Q ss_pred eeEEEEeCCCCCcCcCCCCCCCCCEEEEecC
Q 028124 128 SHMIVVTDACLPLLSSGESAISARVLINYEL 158 (213)
Q Consensus 128 ~~iLV~Td~~~~~~~rGld~~~v~~VI~yd~ 158 (213)
.+|+|+|.. ++...+.+.++++||--..
T Consensus 707 ~dIvV~T~~---ll~~~~~~~~l~lvIiDEa 734 (1151)
T 2eyq_A 707 IDILIGTHK---LLQSDVKFKDLGLLIVDEE 734 (1151)
T ss_dssp CSEEEECTH---HHHSCCCCSSEEEEEEESG
T ss_pred CCEEEECHH---HHhCCccccccceEEEech
Confidence 899999975 2566688888888886543
No 81
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=89.16 E-value=0.9 Score=41.36 Aligned_cols=51 Identities=8% Similarity=0.071 Sum_probs=46.3
Q ss_pred CCcEEEEeCchHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhccc
Q 028124 53 GLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTA 104 (213)
Q Consensus 53 ~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~lhg~~~~~~R~~~l~~Fr~g~ 104 (213)
.+++||.++++.-+....+.|...+ +.+..+||+.+..++...++.++.+.
T Consensus 65 ~g~~lvi~P~~aL~~q~~~~l~~~g-i~~~~l~~~~~~~~~~~~~~~~~~~~ 115 (523)
T 1oyw_A 65 NGLTVVVSPLISLMKDQVDQLQANG-VAAACLNSTQTREQQLEVMTGCRTGQ 115 (523)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHTT-CCEEEECTTSCHHHHHHHHHHHHHTC
T ss_pred CCCEEEECChHHHHHHHHHHHHHcC-CcEEEEeCCCCHHHHHHHHHHHhcCC
Confidence 3689999999999999999999887 89999999999999999999998874
No 82
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=88.35 E-value=1.9 Score=33.16 Aligned_cols=106 Identities=11% Similarity=0.015 Sum_probs=66.0
Q ss_pred EEEEecCcchHHHH-HHHHHHHhhcC--CCCCCcEEEEeCchHHHHHHHHHHhcc-CCceEEEecCCCCHHHHHHHHHHH
Q 028124 25 FYVAVDRLQFKMET-LVELLHLVVAG--RRPGLPMIVCCSSRDELDAVCSAVSNL-ADISFSSLHSDLAETERTLILEEF 100 (213)
Q Consensus 25 ~~~~~~~~~~K~~~-L~~ll~~~~~~--~~~~~~~IIF~~~~~~~~~l~~~L~~~-~~~~~~~lhg~~~~~~R~~~l~~F 100 (213)
..+..+...=|--. +.-++..+... ...+.+++|.|+++.-+..+++.+... +.+.+..++|+.+...+...+
T Consensus 41 ~li~~~TGsGKT~~~~~~~~~~l~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 117 (207)
T 2gxq_A 41 LIGQARTGTGKTLAFALPIAERLAPSQERGRKPRALVLTPTRELALQVASELTAVAPHLKVVAVYGGTGYGKQKEAL--- 117 (207)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHCCCCCCTTCCCSEEEECSSHHHHHHHHHHHHHHCTTSCEEEECSSSCSHHHHHHH---
T ss_pred EEEECCCCChHHHHHHHHHHHHHhhccccCCCCcEEEEECCHHHHHHHHHHHHHHhhcceEEEEECCCChHHHHHHh---
Confidence 44555554446654 44444443210 124678999999999999999999865 236788899987755443322
Q ss_pred hcccccccccccccCCCCCcCCCCCCceeEEEEeCCCCCc-C-cCCCCCCCCCEEEEec
Q 028124 101 RHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPL-L-SSGESAISARVLINYE 157 (213)
Q Consensus 101 r~g~~~~~~~~~~~~~~~~~~~~~~~~~~iLV~Td~~~~~-~-~rGld~~~v~~VI~yd 157 (213)
..+ .+++|+|...+-. + ...+++.++++||.-+
T Consensus 118 ~~~------------------------~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDE 152 (207)
T 2gxq_A 118 LRG------------------------ADAVVATPGRALDYLRQGVLDLSRVEVAVLDE 152 (207)
T ss_dssp HHC------------------------CSEEEECHHHHHHHHHHTSSCCTTCSEEEEES
T ss_pred hCC------------------------CCEEEECHHHHHHHHHcCCcchhhceEEEEEC
Confidence 233 7899999731000 1 2345677888888644
No 83
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=88.25 E-value=1 Score=41.80 Aligned_cols=48 Identities=15% Similarity=0.159 Sum_probs=43.7
Q ss_pred CCcEEEEeCchHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHh
Q 028124 53 GLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFR 101 (213)
Q Consensus 53 ~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~lhg~~~~~~R~~~l~~Fr 101 (213)
.+++||.++++.-+....+.|...| +.+..++|+++..++..++..+.
T Consensus 84 ~g~~lVisP~~~L~~q~~~~l~~~g-i~~~~l~~~~~~~~~~~~~~~l~ 131 (591)
T 2v1x_A 84 DGFTLVICPLISLMEDQLMVLKQLG-ISATMLNASSSKEHVKWVHAEMV 131 (591)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHHT-CCEEECCSSCCHHHHHHHHHHHH
T ss_pred CCcEEEEeCHHHHHHHHHHHHHhcC-CcEEEEeCCCCHHHHHHHHHHhh
Confidence 4689999999999999999999887 89999999999999998888884
No 84
>3gk5_A Uncharacterized rhodanese-related protein TVG0868615; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Thermoplasma volcanium GSS1}
Probab=88.19 E-value=0.83 Score=32.35 Aligned_cols=37 Identities=14% Similarity=0.203 Sum_probs=33.2
Q ss_pred CCCCcEEEEeCchHHHHHHHHHHhccCCceEEEecCCC
Q 028124 51 RPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDL 88 (213)
Q Consensus 51 ~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~lhg~~ 88 (213)
.+.+++++||.+-..+...+..|...|. .+..+.|++
T Consensus 53 ~~~~~ivvyC~~G~rs~~aa~~L~~~G~-~v~~l~GG~ 89 (108)
T 3gk5_A 53 ERDKKYAVICAHGNRSAAAVEFLSQLGL-NIVDVEGGI 89 (108)
T ss_dssp CTTSCEEEECSSSHHHHHHHHHHHTTTC-CEEEETTHH
T ss_pred CCCCeEEEEcCCCcHHHHHHHHHHHcCC-CEEEEcCcH
Confidence 4568999999999999999999999995 999999986
No 85
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=87.82 E-value=6.6 Score=30.47 Aligned_cols=107 Identities=11% Similarity=0.136 Sum_probs=66.1
Q ss_pred EEEEecCcchHHHHHH-HHHHHhhcCCCCCCcEEEEeCchHHHHHHHHHHhcc----CCceEEEecCCCCHHHHHHHHHH
Q 028124 25 FYVAVDRLQFKMETLV-ELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNL----ADISFSSLHSDLAETERTLILEE 99 (213)
Q Consensus 25 ~~~~~~~~~~K~~~L~-~ll~~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~----~~~~~~~lhg~~~~~~R~~~l~~ 99 (213)
..+..+...=|-.... -++..+.. .....++||.|+++.-+..+++.+++. +++.+..++|+.+..++...
T Consensus 54 ~li~~~TGsGKT~~~~~~~~~~~~~-~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~--- 129 (220)
T 1t6n_A 54 VLCQAKSGMGKTAVFVLATLQQLEP-VTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEV--- 129 (220)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHCCC-CTTCCCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHH---
T ss_pred EEEECCCCCchhhhhhHHHHHhhhc-cCCCEEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHH---
Confidence 4444444433554333 33333211 223458999999999999988887664 24789999999887665433
Q ss_pred HhcccccccccccccCCCCCcCCCCCCceeEEEEeCCCCCc--CcCCCCCCCCCEEEEecC
Q 028124 100 FRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPL--LSSGESAISARVLINYEL 158 (213)
Q Consensus 100 Fr~g~~~~~~~~~~~~~~~~~~~~~~~~~~iLV~Td~~~~~--~~rGld~~~v~~VI~yd~ 158 (213)
+..+ ..+++|+|...+-. ....+++.++++||.-+.
T Consensus 130 ~~~~-----------------------~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEa 167 (220)
T 1t6n_A 130 LKKN-----------------------CPHIVVGTPGRILALARNKSLNLKHIKHFILDEC 167 (220)
T ss_dssp HHHS-----------------------CCSEEEECHHHHHHHHHTTSSCCTTCCEEEEESH
T ss_pred HhcC-----------------------CCCEEEeCHHHHHHHHHhCCCCcccCCEEEEcCH
Confidence 3443 26899999741100 123457788888886543
No 86
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=87.21 E-value=2.2 Score=34.12 Aligned_cols=106 Identities=11% Similarity=0.069 Sum_probs=65.6
Q ss_pred EEEEecCcchHHHH-HHHHHHHhhc----CCCCCCcEEEEeCchHHHHHHHHHHhcc---CCceEEEecCCCCHHHHHHH
Q 028124 25 FYVAVDRLQFKMET-LVELLHLVVA----GRRPGLPMIVCCSSRDELDAVCSAVSNL---ADISFSSLHSDLAETERTLI 96 (213)
Q Consensus 25 ~~~~~~~~~~K~~~-L~~ll~~~~~----~~~~~~~~IIF~~~~~~~~~l~~~L~~~---~~~~~~~lhg~~~~~~R~~~ 96 (213)
.++..+...=|-.. +.-++..+.. ....+.++||.|+++.-+..+++.+... .++.+..++|+.+..++...
T Consensus 69 ~l~~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 148 (242)
T 3fe2_A 69 MVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRD 148 (242)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHHTSCCCCTTCCCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHH
T ss_pred EEEECCCcCHHHHHHHHHHHHHHHhccccccCCCCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHH
Confidence 44444544335443 3334443321 0134678999999999999887777653 13789999999887765443
Q ss_pred HHHHhcccccccccccccCCCCCcCCCCCCceeEEEEeCCCCC-cC-cCCCCCCCCCEEEEec
Q 028124 97 LEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLP-LL-SSGESAISARVLINYE 157 (213)
Q Consensus 97 l~~Fr~g~~~~~~~~~~~~~~~~~~~~~~~~~~iLV~Td~~~~-~~-~rGld~~~v~~VI~yd 157 (213)
++.+ .+|+|+|.-.+- .+ ...+++.++++||--+
T Consensus 149 ---~~~~------------------------~~I~v~Tp~~l~~~l~~~~~~~~~~~~lViDE 184 (242)
T 3fe2_A 149 ---LERG------------------------VEICIATPGRLIDFLECGKTNLRRTTYLVLDE 184 (242)
T ss_dssp ---HHHC------------------------CSEEEECHHHHHHHHHHTSCCCTTCCEEEETT
T ss_pred ---hcCC------------------------CCEEEECHHHHHHHHHcCCCCcccccEEEEeC
Confidence 3343 789999973100 01 2345778888888643
No 87
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=86.09 E-value=5.5 Score=31.39 Aligned_cols=104 Identities=13% Similarity=0.084 Sum_probs=66.2
Q ss_pred EEEEecCcchHHHH-HHHHHHHhhcCCCCCCcEEEEeCchHHHHHHHHHHhccC----CceEEEecCCCCHHHHHHHHHH
Q 028124 25 FYVAVDRLQFKMET-LVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLA----DISFSSLHSDLAETERTLILEE 99 (213)
Q Consensus 25 ~~~~~~~~~~K~~~-L~~ll~~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~----~~~~~~lhg~~~~~~R~~~l~~ 99 (213)
..+..+...=|-.. +.-++..+.. ...+.++||.|+++.-+..+++.+...+ ++.+..++|+.+..++...+
T Consensus 64 ~l~~a~TGsGKT~~~~l~~l~~l~~-~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-- 140 (230)
T 2oxc_A 64 LIVQAKSGTGKTCVFSTIALDSLVL-ENLSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL-- 140 (230)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHCCT-TSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT--
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHh-cCCCceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc--
Confidence 44555544446544 3444454322 2346799999999999999988887642 47889999998876654332
Q ss_pred HhcccccccccccccCCCCCcCCCCCCceeEEEEeCCCCCc--CcCCCCCCCCCEEEEec
Q 028124 100 FRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPL--LSSGESAISARVLINYE 157 (213)
Q Consensus 100 Fr~g~~~~~~~~~~~~~~~~~~~~~~~~~~iLV~Td~~~~~--~~rGld~~~v~~VI~yd 157 (213)
. ..+|+|+|.-.+-. ....+++.++++||.-+
T Consensus 141 -~-------------------------~~~Iiv~Tp~~l~~~~~~~~~~~~~~~~lViDE 174 (230)
T 2oxc_A 141 -K-------------------------KCHIAVGSPGRIKQLIELDYLNPGSIRLFILDE 174 (230)
T ss_dssp -T-------------------------SCSEEEECHHHHHHHHHTTSSCGGGCCEEEESS
T ss_pred -c-------------------------CCCEEEECHHHHHHHHhcCCcccccCCEEEeCC
Confidence 2 27899999842100 02345677788877643
No 88
>2jtq_A Phage shock protein E; solution structure rhodanese, stress response, transferase; NMR {Escherichia coli} PDB: 2jtr_A 2jts_A
Probab=86.07 E-value=2.2 Score=28.47 Aligned_cols=38 Identities=11% Similarity=0.135 Sum_probs=30.3
Q ss_pred CCCCcEEEEeCchHHHHHHHHHHhccCCceEEEecCCCC
Q 028124 51 RPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLA 89 (213)
Q Consensus 51 ~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~lhg~~~ 89 (213)
.+.+++++||.+-..+...+..|...|.-.+..+ |++.
T Consensus 39 ~~~~~ivv~C~~g~rs~~aa~~L~~~G~~~v~~l-GG~~ 76 (85)
T 2jtq_A 39 DKNDTVKVYCNAGRQSGQAKEILSEMGYTHVENA-GGLK 76 (85)
T ss_dssp CTTSEEEEEESSSHHHHHHHHHHHHTTCSSEEEE-EETT
T ss_pred CCCCcEEEEcCCCchHHHHHHHHHHcCCCCEEec-cCHH
Confidence 4568999999999999999999999884346666 7753
No 89
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=85.25 E-value=2 Score=33.85 Aligned_cols=79 Identities=16% Similarity=0.143 Sum_probs=51.7
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhcc--CCceEEEecCCCCHHHHHHHHHHHhcccccccccccccCCCCCcCCCCCCcee
Q 028124 52 PGLPMIVCCSSRDELDAVCSAVSNL--ADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSH 129 (213)
Q Consensus 52 ~~~~~IIF~~~~~~~~~l~~~L~~~--~~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (213)
.+.++||.++++.-+..+++.+... .++.+..++|+.+..++. +.+..+ .+
T Consensus 93 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~------------------------~~ 145 (228)
T 3iuy_A 93 NGPGMLVLTPTRELALHVEAECSKYSYKGLKSICIYGGRNRNGQI---EDISKG------------------------VD 145 (228)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHCCTTCCEEEECC------CH---HHHHSC------------------------CS
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHhcccCceEEEEECCCChHHHH---HHhcCC------------------------CC
Confidence 5678999999999999999888764 237888999987654433 334443 78
Q ss_pred EEEEeCCCCCc--CcCCCCCCCCCEEEEec
Q 028124 130 MIVVTDACLPL--LSSGESAISARVLINYE 157 (213)
Q Consensus 130 iLV~Td~~~~~--~~rGld~~~v~~VI~yd 157 (213)
|+|+|.-.+-. ....+++.++++||--+
T Consensus 146 iiv~Tp~~l~~~~~~~~~~~~~~~~lViDE 175 (228)
T 3iuy_A 146 IIIATPGRLNDLQMNNSVNLRSITYLVIDE 175 (228)
T ss_dssp EEEECHHHHHHHHHTTCCCCTTCCEEEECC
T ss_pred EEEECHHHHHHHHHcCCcCcccceEEEEEC
Confidence 99999631100 23356788888888644
No 90
>1gmx_A GLPE protein; transferase, rhodanese, sulfurtransferase, glycerol metabolism; 1.1A {Escherichia coli} SCOP: c.46.1.3 PDB: 1gn0_A
Probab=84.74 E-value=1.6 Score=30.58 Aligned_cols=39 Identities=10% Similarity=0.130 Sum_probs=32.8
Q ss_pred CCCCcEEEEeCchHHHHHHHHHHhccCCceEEEecCCCC
Q 028124 51 RPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLA 89 (213)
Q Consensus 51 ~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~lhg~~~ 89 (213)
.+.+++++||.+-..+...+..|...|.-.+..+.|++.
T Consensus 56 ~~~~~ivvyc~~g~rs~~a~~~L~~~G~~~v~~l~GG~~ 94 (108)
T 1gmx_A 56 DFDTPVMVMCYHGNSSKGAAQYLLQQGYDVVYSIDGGFE 94 (108)
T ss_dssp CTTSCEEEECSSSSHHHHHHHHHHHHTCSSEEEETTHHH
T ss_pred CCCCCEEEEcCCCchHHHHHHHHHHcCCceEEEecCCHH
Confidence 456899999999889999999999988435888999863
No 91
>3foj_A Uncharacterized protein; protein SSP1007, structural genomics, PSI-2, protein structure initiative; 1.60A {Staphylococcus saprophyticus subsp}
Probab=84.18 E-value=1.1 Score=30.97 Aligned_cols=37 Identities=5% Similarity=0.099 Sum_probs=32.8
Q ss_pred CCCCcEEEEeCchHHHHHHHHHHhccCCceEEEecCCC
Q 028124 51 RPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDL 88 (213)
Q Consensus 51 ~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~lhg~~ 88 (213)
.+.+++++||.+-..+...+..|+..|. .+..+.|++
T Consensus 54 ~~~~~ivvyC~~g~rs~~a~~~L~~~G~-~v~~l~GG~ 90 (100)
T 3foj_A 54 NDNETYYIICKAGGRSAQVVQYLEQNGV-NAVNVEGGM 90 (100)
T ss_dssp CTTSEEEEECSSSHHHHHHHHHHHTTTC-EEEEETTHH
T ss_pred CCCCcEEEEcCCCchHHHHHHHHHHCCC-CEEEecccH
Confidence 3568999999999999999999999995 999999985
No 92
>3iwh_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics, C structural genomics of infectious diseases, csgid; 2.00A {Staphylococcus aureus subsp} PDB: 3mzz_A
Probab=83.09 E-value=1.1 Score=31.72 Aligned_cols=37 Identities=8% Similarity=0.108 Sum_probs=32.3
Q ss_pred CCCCcEEEEeCchHHHHHHHHHHhccCCceEEEecCCC
Q 028124 51 RPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDL 88 (213)
Q Consensus 51 ~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~lhg~~ 88 (213)
.+.+++++||.+-.++...+..|...| +....+.|++
T Consensus 54 ~~~~~ivv~C~~G~rS~~aa~~L~~~G-~~~~~l~GG~ 90 (103)
T 3iwh_A 54 NKNEIYYIVCAGGVRSAKVVEYLEANG-IDAVNVEGGM 90 (103)
T ss_dssp CTTSEEEEECSSSSHHHHHHHHHHTTT-CEEEEETTHH
T ss_pred cCCCeEEEECCCCHHHHHHHHHHHHcC-CCEEEecChH
Confidence 456899999999999999999999998 6888888885
No 93
>3g5j_A Putative ATP/GTP binding protein; N-terminal domain of ATP/GTP binding protein, PSI, MCSG, STR genomics, protein structure initiative; HET: PGE; 1.76A {Clostridium difficile}
Probab=82.97 E-value=1.2 Score=32.07 Aligned_cols=35 Identities=11% Similarity=0.226 Sum_probs=30.7
Q ss_pred CcEEEEe-CchHHHHHHHHHHhccCCceEEEecCCCC
Q 028124 54 LPMIVCC-SSRDELDAVCSAVSNLADISFSSLHSDLA 89 (213)
Q Consensus 54 ~~~IIF~-~~~~~~~~l~~~L~~~~~~~~~~lhg~~~ 89 (213)
+++|+|| .+-..+...+..|+..|. .+..+.|++.
T Consensus 90 ~~ivvyC~~~G~rs~~a~~~L~~~G~-~v~~l~GG~~ 125 (134)
T 3g5j_A 90 DNIVIYCARGGMRSGSIVNLLSSLGV-NVYQLEGGYK 125 (134)
T ss_dssp SEEEEECSSSSHHHHHHHHHHHHTTC-CCEEETTHHH
T ss_pred CeEEEEECCCChHHHHHHHHHHHcCC-ceEEEeCcHH
Confidence 7999999 577888899999999995 9999999874
No 94
>1wv9_A Rhodanese homolog TT1651; CDC25, phosphatase, sulfurtransferase, structural genomics, NPPSFA; 2.00A {Thermus thermophilus}
Probab=82.92 E-value=1.4 Score=30.09 Aligned_cols=35 Identities=14% Similarity=0.174 Sum_probs=30.9
Q ss_pred CcEEEEeCchHHHHHHHHHHhccCCceEEEecCCCC
Q 028124 54 LPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLA 89 (213)
Q Consensus 54 ~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~lhg~~~ 89 (213)
+++++||.+-..+...+..|...| +.+..+.|++.
T Consensus 54 ~~ivvyC~~g~rs~~a~~~L~~~G-~~v~~l~GG~~ 88 (94)
T 1wv9_A 54 RPLLLVCEKGLLSQVAALYLEAEG-YEAMSLEGGLQ 88 (94)
T ss_dssp SCEEEECSSSHHHHHHHHHHHHHT-CCEEEETTGGG
T ss_pred CCEEEEcCCCChHHHHHHHHHHcC-CcEEEEcccHH
Confidence 899999999999999999999998 56888889864
No 95
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=82.83 E-value=16 Score=28.83 Aligned_cols=106 Identities=11% Similarity=0.102 Sum_probs=57.3
Q ss_pred EEEEecCcchHHHH-HHHHHHHhhcCCCCCCcEEEEeCchHHHHHHHHHHhccC---CceEEEecCCCCHHHHHHHHHHH
Q 028124 25 FYVAVDRLQFKMET-LVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLA---DISFSSLHSDLAETERTLILEEF 100 (213)
Q Consensus 25 ~~~~~~~~~~K~~~-L~~ll~~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~---~~~~~~lhg~~~~~~R~~~l~~F 100 (213)
.++..+...=|-.. +.-++..+.. .....++||.++++.-+..+++.++..+ .+.+..++|+.+.... .+.+
T Consensus 70 ~li~apTGsGKT~~~~l~~l~~l~~-~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~---~~~l 145 (237)
T 3bor_A 70 VIAQAQSGTGKTATFAISILQQLEI-EFKETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNE---MQKL 145 (237)
T ss_dssp EEECCCSSHHHHHHHHHHHHHHCCT-TSCSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC--------------
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHh-cCCCceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHHH---HHHH
Confidence 34444444435543 3334444221 2346799999999999999988887642 2677888887654332 2334
Q ss_pred hcccccccccccccCCCCCcCCCCCCceeEEEEeCCCCC-cCc-CCCCCCCCCEEEEec
Q 028124 101 RHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLP-LLS-SGESAISARVLINYE 157 (213)
Q Consensus 101 r~g~~~~~~~~~~~~~~~~~~~~~~~~~~iLV~Td~~~~-~~~-rGld~~~v~~VI~yd 157 (213)
+.+ ..+++|+|.-.+- .+. ..+++..+++||.-+
T Consensus 146 ~~~-----------------------~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lViDE 181 (237)
T 3bor_A 146 QAE-----------------------APHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDE 181 (237)
T ss_dssp --C-----------------------CCSEEEECHHHHHHHHHTTSSCSTTCCEEEEES
T ss_pred hcC-----------------------CCCEEEECHHHHHHHHHhCCcCcccCcEEEECC
Confidence 443 2789999942100 022 345677888888643
No 96
>3eme_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics; 2.00A {Staphylococcus aureus subsp} PDB: 3iwh_A 3mzz_A
Probab=82.80 E-value=1.2 Score=31.00 Aligned_cols=37 Identities=5% Similarity=0.038 Sum_probs=32.6
Q ss_pred CCCCcEEEEeCchHHHHHHHHHHhccCCceEEEecCCC
Q 028124 51 RPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDL 88 (213)
Q Consensus 51 ~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~lhg~~ 88 (213)
.+..++|+||.+-..+...+..|...|. .+..+.|++
T Consensus 54 ~~~~~iv~yC~~g~rs~~a~~~L~~~G~-~v~~l~GG~ 90 (103)
T 3eme_A 54 NKNEIYYIVCAGGVRSAKVVEYLEANGI-DAVNVEGGM 90 (103)
T ss_dssp CTTSEEEEECSSSSHHHHHHHHHHTTTC-EEEEETTHH
T ss_pred CCCCeEEEECCCChHHHHHHHHHHHCCC-CeEEeCCCH
Confidence 4568899999999899999999999994 999999985
No 97
>3hix_A ALR3790 protein; rhodanese, rhodanese_3, Q8YQN0, Q8YQN0_anAsp, NSR437I, NESG, structural genomics, PSI-2, protein structure initiative; 1.92A {Anabaena SP} PDB: 3k9r_A
Probab=82.09 E-value=1.5 Score=30.81 Aligned_cols=38 Identities=11% Similarity=0.093 Sum_probs=32.2
Q ss_pred CCCCcEEEEeCchHHHHHHHHHHhccCCceEEEecCCC
Q 028124 51 RPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDL 88 (213)
Q Consensus 51 ~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~lhg~~ 88 (213)
.+..++|+||.+-..+...+..|...|.-.+..+.|++
T Consensus 50 ~~~~~ivvyc~~g~rs~~a~~~L~~~G~~~v~~l~GG~ 87 (106)
T 3hix_A 50 EKSRDIYVYGAGDEQTSQAVNLLRSAGFEHVSELKGGL 87 (106)
T ss_dssp CTTSCEEEECSSHHHHHHHHHHHHHTTCSCEEECTTHH
T ss_pred CCCCeEEEEECCCChHHHHHHHHHHcCCcCEEEecCCH
Confidence 35678999999999999999999999843588899985
No 98
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=81.80 E-value=15 Score=27.89 Aligned_cols=105 Identities=10% Similarity=0.121 Sum_probs=64.2
Q ss_pred EEEEecCcchHHHH-HHHHHHHhhcCCCCCCcEEEEeCchHHHHHHHHHHhcc----CCceEEEecCCCCHHHHHHHHHH
Q 028124 25 FYVAVDRLQFKMET-LVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNL----ADISFSSLHSDLAETERTLILEE 99 (213)
Q Consensus 25 ~~~~~~~~~~K~~~-L~~ll~~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~----~~~~~~~lhg~~~~~~R~~~l~~ 99 (213)
..+..+...=|-.. +.-++..+.. ...+.++||.|+++.-+..+++.+... +++.+..++|+.+..+.. ..
T Consensus 43 ~lv~apTGsGKT~~~~~~~~~~~~~-~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~ 118 (206)
T 1vec_A 43 ILARAKNGTGKSGAYLIPLLERLDL-KKDNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDI---MR 118 (206)
T ss_dssp EEEECCSSSTTHHHHHHHHHHHCCT-TSCSCCEEEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHH---HH
T ss_pred EEEECCCCCchHHHHHHHHHHHhcc-cCCCeeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHH---Hh
Confidence 44555544335543 3334444221 234568999999999999888887654 247889999998765543 22
Q ss_pred HhcccccccccccccCCCCCcCCCCCCceeEEEEeCCCCC-cC-cCCCCCCCCCEEEEec
Q 028124 100 FRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLP-LL-SSGESAISARVLINYE 157 (213)
Q Consensus 100 Fr~g~~~~~~~~~~~~~~~~~~~~~~~~~~iLV~Td~~~~-~~-~rGld~~~v~~VI~yd 157 (213)
+.. ..+|+|+|...+- .+ ....++.++++||.-+
T Consensus 119 ~~~------------------------~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDE 154 (206)
T 1vec_A 119 LDD------------------------TVHVVIATPGRILDLIKKGVAKVDHVQMIVLDE 154 (206)
T ss_dssp TTS------------------------CCSEEEECHHHHHHHHHTTCSCCTTCCEEEEET
T ss_pred cCC------------------------CCCEEEeCHHHHHHHHHcCCcCcccCCEEEEEC
Confidence 333 2789999973100 01 2234677888887643
No 99
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=81.50 E-value=15 Score=30.72 Aligned_cols=106 Identities=10% Similarity=0.137 Sum_probs=66.0
Q ss_pred EEEEecCcchHHHHH-HHHHHHhhcCCCCCCcEEEEeCchHHHHHHHHHHhcc----CCceEEEecCCCCHHHHHHHHHH
Q 028124 25 FYVAVDRLQFKMETL-VELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNL----ADISFSSLHSDLAETERTLILEE 99 (213)
Q Consensus 25 ~~~~~~~~~~K~~~L-~~ll~~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~----~~~~~~~lhg~~~~~~R~~~l~~ 99 (213)
..+..+...=|--.. .-++..+.. .....++||.|+++.-+..+++.+... +++.+..++|+.+..++...
T Consensus 48 ~lv~a~TGsGKT~~~~~~~~~~l~~-~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~--- 123 (391)
T 1xti_A 48 VLCQAKSGMGKTAVFVLATLQQLEP-VTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEV--- 123 (391)
T ss_dssp EEEECSSCSSHHHHHHHHHHHHCCC-CTTCCCEEEECSCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHH---
T ss_pred EEEECCCCCcHHHHHHHHHHHhhcc-cCCCeeEEEECCCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHH---
Confidence 445555444355443 333333211 234569999999999999888877654 24789999999887665443
Q ss_pred HhcccccccccccccCCCCCcCCCCCCceeEEEEeCCCCCc--CcCCCCCCCCCEEEEec
Q 028124 100 FRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPL--LSSGESAISARVLINYE 157 (213)
Q Consensus 100 Fr~g~~~~~~~~~~~~~~~~~~~~~~~~~~iLV~Td~~~~~--~~rGld~~~v~~VI~yd 157 (213)
+..+ ..+|+|+|.-.+-. ....+++.++++||.-+
T Consensus 124 ~~~~-----------------------~~~iiv~T~~~l~~~~~~~~~~~~~~~~vViDE 160 (391)
T 1xti_A 124 LKKN-----------------------CPHIVVGTPGRILALARNKSLNLKHIKHFILDE 160 (391)
T ss_dssp HHHS-----------------------CCSEEEECHHHHHHHHHTTSSCCTTCSEEEECS
T ss_pred HhcC-----------------------CCCEEEECHHHHHHHHHcCCccccccCEEEEeC
Confidence 3343 26899999741100 12345677888888644
No 100
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=81.24 E-value=5.2 Score=32.48 Aligned_cols=79 Identities=13% Similarity=0.164 Sum_probs=54.1
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhccC---CceEEEecCCCCHHHHHHHHHHHhcccccccccccccCCCCCcCCCCCCce
Q 028124 52 PGLPMIVCCSSRDELDAVCSAVSNLA---DISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKS 128 (213)
Q Consensus 52 ~~~~~IIF~~~~~~~~~l~~~L~~~~---~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (213)
.+.++||.++++.-+..+++.++... ...+..++|+.+..... +.+..+ .
T Consensus 125 ~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~~~~~------------------------~ 177 (262)
T 3ly5_A 125 NGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEA---QKLGNG------------------------I 177 (262)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHH---HHHHHC------------------------C
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHH---HHhcCC------------------------C
Confidence 46789999999999999988887641 26788899987765543 334443 7
Q ss_pred eEEEEeCCCCCc-C--cCCCCCCCCCEEEEec
Q 028124 129 HMIVVTDACLPL-L--SSGESAISARVLINYE 157 (213)
Q Consensus 129 ~iLV~Td~~~~~-~--~rGld~~~v~~VI~yd 157 (213)
+|+|+|+-.+-. + ..++++.++++||--+
T Consensus 178 ~Iiv~Tp~~l~~~~~~~~~~~~~~l~~lViDE 209 (262)
T 3ly5_A 178 NIIVATPGRLLDHMQNTPGFMYKNLQCLVIDE 209 (262)
T ss_dssp SEEEECHHHHHHHHHHCTTCCCTTCCEEEECS
T ss_pred CEEEEcHHHHHHHHHccCCcccccCCEEEEcC
Confidence 899999521000 1 2346788888888643
No 101
>3flh_A Uncharacterized protein LP_1913; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.00A {Lactobacillus plantarum} PDB: 3fnj_A 3i3u_A
Probab=80.93 E-value=1.6 Score=31.58 Aligned_cols=37 Identities=11% Similarity=0.032 Sum_probs=31.5
Q ss_pred CCCCcEEEEeCchHH--HHHHHHHHhccCCceEEEecCCC
Q 028124 51 RPGLPMIVCCSSRDE--LDAVCSAVSNLADISFSSLHSDL 88 (213)
Q Consensus 51 ~~~~~~IIF~~~~~~--~~~l~~~L~~~~~~~~~~lhg~~ 88 (213)
.+.+++|+||.+-.. +...+..|+..| +.+..+.|++
T Consensus 69 ~~~~~ivvyC~~g~r~~s~~a~~~L~~~G-~~v~~l~GG~ 107 (124)
T 3flh_A 69 DPAKTYVVYDWTGGTTLGKTALLVLLSAG-FEAYELAGAL 107 (124)
T ss_dssp CTTSEEEEECSSSSCSHHHHHHHHHHHHT-CEEEEETTHH
T ss_pred CCCCeEEEEeCCCCchHHHHHHHHHHHcC-CeEEEeCCcH
Confidence 456899999998877 889999999998 6888889986
No 102
>1tq1_A AT5G66040, senescence-associated family protein; CESG, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} SCOP: c.46.1.3
Probab=79.26 E-value=1.9 Score=31.38 Aligned_cols=39 Identities=10% Similarity=0.077 Sum_probs=32.5
Q ss_pred CCCCcEEEEeCchHHHHHHHHHHhccCCceEEEecCCCC
Q 028124 51 RPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLA 89 (213)
Q Consensus 51 ~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~lhg~~~ 89 (213)
.+.+++|+||.+-.++...+..|...|.-.+..+.|++.
T Consensus 80 ~~~~~ivvyC~~G~rs~~aa~~L~~~G~~~v~~l~GG~~ 118 (129)
T 1tq1_A 80 GQSDNIIVGCQSGGRSIKATTDLLHAGFTGVKDIVGGYS 118 (129)
T ss_dssp CTTSSEEEEESSCSHHHHHHHHHHHHHCCSEEEEECCHH
T ss_pred CCCCeEEEECCCCcHHHHHHHHHHHcCCCCeEEeCCcHH
Confidence 356899999999889999999999888435888999863
No 103
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=78.93 E-value=8.2 Score=29.94 Aligned_cols=104 Identities=13% Similarity=0.066 Sum_probs=59.8
Q ss_pred EEEEecCcchHHHH-HHHHHHHhhcCCCCCCcEEEEeCchHHHHHHHHHHhcc---CCceEEEecCCCCHHHHHHHHHHH
Q 028124 25 FYVAVDRLQFKMET-LVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNL---ADISFSSLHSDLAETERTLILEEF 100 (213)
Q Consensus 25 ~~~~~~~~~~K~~~-L~~ll~~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~---~~~~~~~lhg~~~~~~R~~~l~~F 100 (213)
..+..+...=|-.. +..++..+.. ...+.++||.|+++.-+..+++.+... .++.+..++|+.+..++.. .+
T Consensus 54 ~lv~~pTGsGKT~~~~~~~l~~l~~-~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~ 129 (224)
T 1qde_A 54 VLAQAQSGTGKTGTFSIAALQRIDT-SVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAE---GL 129 (224)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHCCT-TCCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC-------------C
T ss_pred EEEECCCCCcHHHHHHHHHHHHHhc-cCCCceEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHh---cC
Confidence 45555554446655 4455554322 234679999999999999888877653 1368888999876544322 11
Q ss_pred hcccccccccccccCCCCCcCCCCCCceeEEEEeCCCCC--cCcCCCCCCCCCEEEEec
Q 028124 101 RHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLP--LLSSGESAISARVLINYE 157 (213)
Q Consensus 101 r~g~~~~~~~~~~~~~~~~~~~~~~~~~~iLV~Td~~~~--~~~rGld~~~v~~VI~yd 157 (213)
. ..+|+|+|...+- ......++..+++||.-+
T Consensus 130 ~-------------------------~~~iiv~Tp~~l~~~~~~~~~~~~~~~~iViDE 163 (224)
T 1qde_A 130 R-------------------------DAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDE 163 (224)
T ss_dssp T-------------------------TCSEEEECHHHHHHHHHTTSSCCTTCCEEEEET
T ss_pred C-------------------------CCCEEEECHHHHHHHHHhCCcchhhCcEEEEcC
Confidence 1 2679999974100 013456677888888644
No 104
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=78.39 E-value=9.6 Score=31.70 Aligned_cols=103 Identities=6% Similarity=0.007 Sum_probs=61.8
Q ss_pred EEEEEecCcchHHHH-HHHHHHHhhcCCCCCCcEEEEeCchHHHHHHHHHHhcc----CCceEEEecCCCCHHHHHHHHH
Q 028124 24 HFYVAVDRLQFKMET-LVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNL----ADISFSSLHSDLAETERTLILE 98 (213)
Q Consensus 24 ~~~~~~~~~~~K~~~-L~~ll~~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~----~~~~~~~lhg~~~~~~R~~~l~ 98 (213)
..++..+...=|... +.-++..+.. .....++||.++|+.-|..++..+... +.+.+..++|+.+...+.
T Consensus 133 ~~l~~a~TGsGKT~a~~lp~l~~l~~-~~~~~~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~---- 207 (300)
T 3fmo_B 133 NLIAQSQSGTGKTAAFVLAMLSQVEP-ANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQ---- 207 (300)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHHCCT-TSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTTC----
T ss_pred eEEEECCCCCCccHHHHHHHHHhhhc-cCCCceEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhhh----
Confidence 344555444436543 4455655322 234458999999999999887777654 236677777765422111
Q ss_pred HHhcccccccccccccCCCCCcCCCCCCceeEEEEeCCCCC-cC-c-CCCCCCCCCEEEEec
Q 028124 99 EFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLP-LL-S-SGESAISARVLINYE 157 (213)
Q Consensus 99 ~Fr~g~~~~~~~~~~~~~~~~~~~~~~~~~~iLV~Td~~~~-~~-~-rGld~~~v~~VI~yd 157 (213)
+. ..+|+|+|+..+- ++ . ..+++..+.++|.-+
T Consensus 208 --~~------------------------~~~IlV~TP~~l~~~l~~~~~~~l~~l~~lVlDE 243 (300)
T 3fmo_B 208 --KI------------------------SEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDE 243 (300)
T ss_dssp --CC------------------------CCSEEEECHHHHHHHHTTTCCCCGGGCSEEEETT
T ss_pred --cC------------------------CCCEEEECHHHHHHHHHhcCCCChhhceEEEEeC
Confidence 11 3689999985210 01 1 357888999988744
No 105
>2k0z_A Uncharacterized protein HP1203; A/B domain, structural genomics, unknown function, PSI-2, PR structure initiative; NMR {Helicobacter pylori}
Probab=77.57 E-value=3.3 Score=29.15 Aligned_cols=38 Identities=8% Similarity=0.149 Sum_probs=31.9
Q ss_pred CCCCcEEEEeCchHHHHHHHHHHhccCCceEEEecCCCC
Q 028124 51 RPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLA 89 (213)
Q Consensus 51 ~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~lhg~~~ 89 (213)
.+.+++|+||.+-..+...+..|...|+-. ..+.|++.
T Consensus 54 ~~~~~ivvyC~~G~rs~~aa~~L~~~G~~~-~~l~GG~~ 91 (110)
T 2k0z_A 54 HKDKKVLLHCRAGRRALDAAKSMHELGYTP-YYLEGNVY 91 (110)
T ss_dssp CSSSCEEEECSSSHHHHHHHHHHHHTTCCC-EEEESCGG
T ss_pred CCCCEEEEEeCCCchHHHHHHHHHHCCCCE-EEecCCHH
Confidence 457899999999999999999999998434 88889863
No 106
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=77.34 E-value=3 Score=33.17 Aligned_cols=107 Identities=14% Similarity=0.187 Sum_probs=61.7
Q ss_pred EEEEecCcchHHHH-HHHHHHHhhcCCCCCCcEEEEeCchHHHHHHHHHHhccC---CceEEEecCCCCHHHHHHHHHHH
Q 028124 25 FYVAVDRLQFKMET-LVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLA---DISFSSLHSDLAETERTLILEEF 100 (213)
Q Consensus 25 ~~~~~~~~~~K~~~-L~~ll~~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~---~~~~~~lhg~~~~~~R~~~l~~F 100 (213)
.++..+...=|-.. +.-++..+......+.++||.++++.-+..+++.+.... ++.+..++|+..... ++
T Consensus 69 ~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~ 142 (245)
T 3dkp_A 69 LLASAPTGSGKTLAFSIPILMQLKQPANKGFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAK------KF 142 (245)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHHCSCCSSSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHHT------TT
T ss_pred EEEECCCCCcHHHHHHHHHHHHHhhcccCCceEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCccHHH------Hh
Confidence 44555544436543 444455433222345689999999999999988887641 256777776532111 11
Q ss_pred hcccccccccccccCCCCCcCCCCCCceeEEEEeCCCCCc-C---cCCCCCCCCCEEEEec
Q 028124 101 RHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPL-L---SSGESAISARVLINYE 157 (213)
Q Consensus 101 r~g~~~~~~~~~~~~~~~~~~~~~~~~~~iLV~Td~~~~~-~---~rGld~~~v~~VI~yd 157 (213)
... .....+|+|+|.-.+-. + ...+++.++++||.-+
T Consensus 143 ~~~--------------------~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~~~lViDE 183 (245)
T 3dkp_A 143 GPK--------------------SSKKFDILVTTPNRLIYLLKQDPPGIDLASVEWLVVDE 183 (245)
T ss_dssp STT--------------------SCCCCCEEEECHHHHHHHHHSSSCSCCCTTCCEEEESS
T ss_pred hhh--------------------hcCCCCEEEECHHHHHHHHHhCCCCcccccCcEEEEeC
Confidence 110 01247899999542100 1 1257888999888744
No 107
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=77.27 E-value=11 Score=32.06 Aligned_cols=94 Identities=13% Similarity=0.144 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHhhcCCCCCCcEEEEeCchHHHHHHHHHHhccCCc---eEEEecCCCCHHHHHHHHHHHhcccccccccc
Q 028124 35 KMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADI---SFSSLHSDLAETERTLILEEFRHTAMKWNQKV 111 (213)
Q Consensus 35 K~~~L~~ll~~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~---~~~~lhg~~~~~~R~~~l~~Fr~g~~~~~~~~ 111 (213)
|--....++..... ....++||.|+++.-+...++.+.+..+. .+..+||+.+..++.... ..
T Consensus 36 KT~~~~~~~~~~~~--~~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~---~~--------- 101 (494)
T 1wp9_A 36 KTLIAMMIAEYRLT--KYGGKVLMLAPTKPLVLQHAESFRRLFNLPPEKIVALTGEKSPEERSKAW---AR--------- 101 (494)
T ss_dssp HHHHHHHHHHHHHH--HSCSCEEEECSSHHHHHHHHHHHHHHBCSCGGGEEEECSCSCHHHHHHHH---HH---------
T ss_pred HHHHHHHHHHHHHh--cCCCeEEEEECCHHHHHHHHHHHHHHhCcchhheEEeeCCcchhhhhhhc---cC---------
Confidence 55444444433221 24689999999999999888888765224 899999999877654332 22
Q ss_pred cccCCCCCcCCCCCCceeEEEEeCCCCCc--CcCCCCCCCCCEEEEecC
Q 028124 112 TEQSGDESETGKDEHKSHMIVVTDACLPL--LSSGESAISARVLINYEL 158 (213)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~iLV~Td~~~~~--~~rGld~~~v~~VI~yd~ 158 (213)
.+|+|+|.-.+-. ....+...+.++||--+.
T Consensus 102 ----------------~~ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEa 134 (494)
T 1wp9_A 102 ----------------AKVIVATPQTIENDLLAGRISLEDVSLIVFDEA 134 (494)
T ss_dssp ----------------CSEEEECHHHHHHHHHTTSCCTTSCSEEEEETG
T ss_pred ----------------CCEEEecHHHHHHHHhcCCcchhhceEEEEECC
Confidence 6789998641000 112356677888776443
No 108
>2fsx_A RV0390, COG0607: rhodanese-related sulfurtransferase; RV0390 BR SAD DATA with FBAR, structural genomics, PSI; 1.80A {Mycobacterium tuberculosis}
Probab=76.98 E-value=2.7 Score=31.29 Aligned_cols=38 Identities=11% Similarity=0.136 Sum_probs=31.2
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhccCCceEEEecCCCC
Q 028124 52 PGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLA 89 (213)
Q Consensus 52 ~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~lhg~~~ 89 (213)
+..++||||.+-..+...+..|...|.-.+..+.|++.
T Consensus 79 ~~~~ivvyC~~G~rS~~aa~~L~~~G~~~v~~l~GG~~ 116 (148)
T 2fsx_A 79 HERPVIFLCRSGNRSIGAAEVATEAGITPAYNVLDGFE 116 (148)
T ss_dssp --CCEEEECSSSSTHHHHHHHHHHTTCCSEEEETTTTT
T ss_pred CCCEEEEEcCCChhHHHHHHHHHHcCCcceEEEcCChh
Confidence 46899999999888899999999998436889999874
No 109
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=76.46 E-value=13 Score=31.08 Aligned_cols=104 Identities=13% Similarity=0.025 Sum_probs=63.5
Q ss_pred EEEEecCcchHHHH-HHHHHHHhhcCCCCCCcEEEEeCchHHHHHHHHHHhcc---CCceEEEecCCCCHHHHHHHHHHH
Q 028124 25 FYVAVDRLQFKMET-LVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNL---ADISFSSLHSDLAETERTLILEEF 100 (213)
Q Consensus 25 ~~~~~~~~~~K~~~-L~~ll~~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~---~~~~~~~lhg~~~~~~R~~~l~~F 100 (213)
.++..+...=|--. +.-++..+.. .....++||.|+++.-+..+++.+... .++.+..++|+.+..++...+.
T Consensus 61 ~lv~~~TGsGKT~~~~~~~~~~l~~-~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-- 137 (394)
T 1fuu_A 61 VLAQAQSGTGKTGTFSIAALQRIDT-SVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-- 137 (394)
T ss_dssp EEECCCSSHHHHHHHHHHHHHHCCT-TCCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHH--
T ss_pred EEEECCCCChHHHHHHHHHHHHhhc-cCCCCCEEEEcCCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcC--
Confidence 34444444435543 3334444221 235679999999999999888877653 1378999999988766554332
Q ss_pred hcccccccccccccCCCCCcCCCCCCceeEEEEeCCCCCc--CcCCCCCCCCCEEEEec
Q 028124 101 RHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPL--LSSGESAISARVLINYE 157 (213)
Q Consensus 101 r~g~~~~~~~~~~~~~~~~~~~~~~~~~~iLV~Td~~~~~--~~rGld~~~v~~VI~yd 157 (213)
. .+++|+|.-.+-. ....+.+..+++||.-+
T Consensus 138 -~-------------------------~~i~v~T~~~l~~~~~~~~~~~~~~~~vIiDE 170 (394)
T 1fuu_A 138 -D-------------------------AQIVVGTPGRVFDNIQRRRFRTDKIKMFILDE 170 (394)
T ss_dssp -H-------------------------CSEEEECHHHHHHHHHTTSSCCTTCCEEEEET
T ss_pred -C-------------------------CCEEEECHHHHHHHHHhCCcchhhCcEEEEEC
Confidence 2 6789998541000 12244566778777644
No 110
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=76.35 E-value=6.6 Score=31.31 Aligned_cols=78 Identities=12% Similarity=0.089 Sum_probs=52.7
Q ss_pred CCcEEEEeCchHHHHHHHHHHhcc---CCceEEEecCCCCHHHHHHHHHHHhcccccccccccccCCCCCcCCCCCCcee
Q 028124 53 GLPMIVCCSSRDELDAVCSAVSNL---ADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSH 129 (213)
Q Consensus 53 ~~~~IIF~~~~~~~~~l~~~L~~~---~~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (213)
+.++||.|+++.-+..+++.+... ..+.+..++|+.+..+.. +.+..+ .+
T Consensus 100 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~~~~~------------------------~~ 152 (253)
T 1wrb_A 100 YPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQI---REVQMG------------------------CH 152 (253)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHH---HHHSSC------------------------CS
T ss_pred CceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHH---HHhCCC------------------------CC
Confidence 468999999999999888887654 126788899987655443 233333 78
Q ss_pred EEEEeCCCCCc-C-cCCCCCCCCCEEEEec
Q 028124 130 MIVVTDACLPL-L-SSGESAISARVLINYE 157 (213)
Q Consensus 130 iLV~Td~~~~~-~-~rGld~~~v~~VI~yd 157 (213)
|+|+|.-.+-. + ...+++..+++||.-+
T Consensus 153 Ivv~Tp~~l~~~l~~~~~~~~~~~~lViDE 182 (253)
T 1wrb_A 153 LLVATPGRLVDFIEKNKISLEFCKYIVLDE 182 (253)
T ss_dssp EEEECHHHHHHHHHTTSBCCTTCCEEEEET
T ss_pred EEEECHHHHHHHHHcCCCChhhCCEEEEeC
Confidence 99999842110 1 2235778888888643
No 111
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=76.29 E-value=5.4 Score=31.40 Aligned_cols=78 Identities=14% Similarity=0.161 Sum_probs=51.3
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhccC---CceEEEecCCCCHHHHHHHHHHHhcccccccccccccCCCCCcCCCCCCce
Q 028124 52 PGLPMIVCCSSRDELDAVCSAVSNLA---DISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKS 128 (213)
Q Consensus 52 ~~~~~IIF~~~~~~~~~l~~~L~~~~---~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (213)
.+.++||.|+++.-+..+++.++..+ ++.+..++|+.+....... + .+ .
T Consensus 96 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~-~~------------------------~ 147 (236)
T 2pl3_A 96 DGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAER---I-NN------------------------I 147 (236)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHH---H-TT------------------------C
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHh---C-CC------------------------C
Confidence 46789999999999999988887642 2678899998765544322 2 22 7
Q ss_pred eEEEEeCCCCCc-CcC--CCCCCCCCEEEEec
Q 028124 129 HMIVVTDACLPL-LSS--GESAISARVLINYE 157 (213)
Q Consensus 129 ~iLV~Td~~~~~-~~r--Gld~~~v~~VI~yd 157 (213)
+|+|+|...+-. +.+ .+++.++++||.-+
T Consensus 148 ~iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDE 179 (236)
T 2pl3_A 148 NILVCTPGRLLQHMDETVSFHATDLQMLVLDE 179 (236)
T ss_dssp SEEEECHHHHHHHHHHCSSCCCTTCCEEEETT
T ss_pred CEEEECHHHHHHHHHhcCCcccccccEEEEeC
Confidence 899999741100 112 36677888887643
No 112
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=75.86 E-value=6.5 Score=38.97 Aligned_cols=79 Identities=10% Similarity=0.129 Sum_probs=57.1
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhccC---Cc----eEEEecCCCCHHHHHHHHHHHhcccccccccccccCCCCCcCCCC
Q 028124 52 PGLPMIVCCSSRDELDAVCSAVSNLA---DI----SFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKD 124 (213)
Q Consensus 52 ~~~~~IIF~~~~~~~~~l~~~L~~~~---~~----~~~~lhg~~~~~~R~~~l~~Fr~g~~~~~~~~~~~~~~~~~~~~~ 124 (213)
.+.++||.++|+.-|..+++.++... ++ .+..+||+.+..++.+..+.+++
T Consensus 98 ~~~~~lil~PtreLa~Q~~~~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~---------------------- 155 (1054)
T 1gku_B 98 KGKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN---------------------- 155 (1054)
T ss_dssp TSCCEEEEESCHHHHHHHHHHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG----------------------
T ss_pred cCCeEEEEeccHHHHHHHHHHHHHHHhhcCCCccceEEEEeCCCChhhHHHHHhhccC----------------------
Confidence 46799999999999999888887541 25 78999999998887766666655
Q ss_pred CCceeEEEEeCCCCCcCcCCCCCCCCCEEEEec
Q 028124 125 EHKSHMIVVTDACLPLLSSGESAISARVLINYE 157 (213)
Q Consensus 125 ~~~~~iLV~Td~~~~~~~rGld~~~v~~VI~yd 157 (213)
.+|+|+|+..+-..-+. +..+++||.-+
T Consensus 156 ---~~IlV~TP~~L~~~l~~--L~~l~~lViDE 183 (1054)
T 1gku_B 156 ---FKIVITTTQFLSKHYRE--LGHFDFIFVDD 183 (1054)
T ss_dssp ---CSEEEEEHHHHHHCSTT--SCCCSEEEESC
T ss_pred ---CCEEEEcHHHHHHHHHH--hccCCEEEEeC
Confidence 67999997421111111 55788887643
No 113
>1qxn_A SUD, sulfide dehydrogenase; polysulfide-sulfur transferase, homodimer; NMR {Wolinella succinogenes} SCOP: c.46.1.3
Probab=75.64 E-value=2.4 Score=31.26 Aligned_cols=38 Identities=11% Similarity=0.243 Sum_probs=32.7
Q ss_pred CCCCcEEEEeCchHHHHHHHHHHhccCCceEEEecCCC
Q 028124 51 RPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDL 88 (213)
Q Consensus 51 ~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~lhg~~ 88 (213)
.+.+++||||.+-..+...+..|...|.-.+..+.|++
T Consensus 80 ~~~~~ivvyC~~G~rS~~aa~~L~~~G~~~v~~l~GG~ 117 (137)
T 1qxn_A 80 DPEKPVVVFCKTAARAALAGKTLREYGFKTIYNSEGGM 117 (137)
T ss_dssp CTTSCEEEECCSSSCHHHHHHHHHHHTCSCEEEESSCH
T ss_pred CCCCeEEEEcCCCcHHHHHHHHHHHcCCcceEEEcCcH
Confidence 45789999999999999999999999843688999996
No 114
>2hhg_A Hypothetical protein RPA3614; MCSG, structural genomics, rohopseudom palustris, PSI-2, protein structure initiative; 1.20A {Rhodopseudomonas palustris}
Probab=75.24 E-value=2.3 Score=31.06 Aligned_cols=37 Identities=3% Similarity=0.129 Sum_probs=31.9
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhccCCceEEEecCCC
Q 028124 52 PGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDL 88 (213)
Q Consensus 52 ~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~lhg~~ 88 (213)
+..++||||.+-..+...+..|...|+-.+..+.|++
T Consensus 85 ~~~~ivvyC~~G~rs~~a~~~L~~~G~~~v~~l~GG~ 121 (139)
T 2hhg_A 85 EDKKFVFYCAGGLRSALAAKTAQDMGLKPVAHIEGGF 121 (139)
T ss_dssp SSSEEEEECSSSHHHHHHHHHHHHHTCCSEEEETTHH
T ss_pred CCCeEEEECCCChHHHHHHHHHHHcCCCCeEEecCCH
Confidence 4678999999999999999999999843589999986
No 115
>3d1p_A Putative thiosulfate sulfurtransferase YOR285W; atomic structure, atomic resolution structure, PSI, MCSG; HET: MSE; 0.98A {Saccharomyces cerevisiae}
Probab=75.01 E-value=2.8 Score=30.70 Aligned_cols=39 Identities=13% Similarity=0.096 Sum_probs=32.6
Q ss_pred CCCCcEEEEeCchHHHHHHHHHHhccCCceEEEecCCCC
Q 028124 51 RPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLA 89 (213)
Q Consensus 51 ~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~lhg~~~ 89 (213)
.+.+++|+||.+-..+...+..|...|.-.+..+.|++.
T Consensus 89 ~~~~~ivvyC~~G~rs~~aa~~L~~~G~~~v~~l~GG~~ 127 (139)
T 3d1p_A 89 DSAKELIFYCASGKRGGEAQKVASSHGYSNTSLYPGSMN 127 (139)
T ss_dssp CTTSEEEEECSSSHHHHHHHHHHHTTTCCSEEECTTHHH
T ss_pred CCCCeEEEECCCCchHHHHHHHHHHcCCCCeEEeCCcHH
Confidence 356889999999999999999999998435888999863
No 116
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=74.84 E-value=27 Score=29.51 Aligned_cols=104 Identities=9% Similarity=0.061 Sum_probs=62.6
Q ss_pred EEEEecCcchHHHHH-HHHHHHhhcCCCCCCcEEEEeCchHHHHHHHHHHhccC---CceEEEecCCCCHHHHHHHHHHH
Q 028124 25 FYVAVDRLQFKMETL-VELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLA---DISFSSLHSDLAETERTLILEEF 100 (213)
Q Consensus 25 ~~~~~~~~~~K~~~L-~~ll~~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~---~~~~~~lhg~~~~~~R~~~l~~F 100 (213)
.++..+...=|-... .-++..+.. .....++||.|+++.-+..+++.+...+ .+.+..++|+.+..+.... .
T Consensus 77 ~lv~a~TGsGKT~~~~~~~~~~l~~-~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~ 152 (410)
T 2j0s_A 77 VIAQSQSGTGKTATFSISVLQCLDI-QVRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRK---L 152 (410)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTCCT-TSCSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECTTSCHHHHHHH---H
T ss_pred EEEECCCCCCchHHHHHHHHHHHhh-ccCCceEEEEcCcHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHH---h
Confidence 444444443355433 333333211 2356899999999999999988886542 3678889998876665433 3
Q ss_pred hcccccccccccccCCCCCcCCCCCCceeEEEEeCCCCC-cC-cCCCCCCCCCEEEEe
Q 028124 101 RHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLP-LL-SSGESAISARVLINY 156 (213)
Q Consensus 101 r~g~~~~~~~~~~~~~~~~~~~~~~~~~~iLV~Td~~~~-~~-~rGld~~~v~~VI~y 156 (213)
..+ .+++|+|...+- .+ ...++...+++||.-
T Consensus 153 ~~~------------------------~~ivv~Tp~~l~~~l~~~~~~~~~~~~vViD 186 (410)
T 2j0s_A 153 DYG------------------------QHVVAGTPGRVFDMIRRRSLRTRAIKMLVLD 186 (410)
T ss_dssp HHC------------------------CSEEEECHHHHHHHHHTTSSCCTTCCEEEEE
T ss_pred hcC------------------------CCEEEcCHHHHHHHHHhCCccHhheeEEEEc
Confidence 333 678999852100 02 224566777777753
No 117
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=74.73 E-value=8.8 Score=33.81 Aligned_cols=77 Identities=13% Similarity=0.139 Sum_probs=52.0
Q ss_pred CCcEEEEeCchHHHHHHHHHHhcc----CCceEEEecCCCCHHHHHHHHHHHhcccccccccccccCCCCCcCCCCCCce
Q 028124 53 GLPMIVCCSSRDELDAVCSAVSNL----ADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKS 128 (213)
Q Consensus 53 ~~~~IIF~~~~~~~~~l~~~L~~~----~~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (213)
..++||.|+++.-+..+++.+... + +.+..++|+.+...+.. .+..+ .
T Consensus 52 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~---~~~~~------------------------~ 103 (555)
T 3tbk_A 52 KGKVVFFANQIPVYEQQATVFSRYFERLG-YNIASISGATSDSVSVQ---HIIED------------------------N 103 (555)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHHTTT-CCEEEECTTTGGGSCHH---HHHHH------------------------C
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHHhccCC-cEEEEEcCCCcchhhHH---HHhcC------------------------C
Confidence 789999999999888888877664 5 88999999986555432 22333 7
Q ss_pred eEEEEeCCCCCc-CcCC-C-CCCCCCEEEEec
Q 028124 129 HMIVVTDACLPL-LSSG-E-SAISARVLINYE 157 (213)
Q Consensus 129 ~iLV~Td~~~~~-~~rG-l-d~~~v~~VI~yd 157 (213)
+|+|+|.-.+-. +..+ + .+.++++||--+
T Consensus 104 ~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDE 135 (555)
T 3tbk_A 104 DIIILTPQILVNNLNNGAIPSLSVFTLMIFDE 135 (555)
T ss_dssp SEEEECHHHHHHHHHTSSSCCGGGCSEEEETT
T ss_pred CEEEECHHHHHHHHhcCcccccccCCEEEEEC
Confidence 799999742100 1112 3 566778877644
No 118
>3ilm_A ALR3790 protein; rhodanese-like, NSR437H, NESG, structural genomics, protein structure initiative, northeast structural genomics consortium; 2.26A {Nostoc SP} PDB: 2kl3_A
Probab=74.59 E-value=2.9 Score=31.11 Aligned_cols=38 Identities=11% Similarity=0.093 Sum_probs=32.2
Q ss_pred CCCCcEEEEeCchHHHHHHHHHHhccCCceEEEecCCC
Q 028124 51 RPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDL 88 (213)
Q Consensus 51 ~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~lhg~~ 88 (213)
.+..++|+||.+-..+...+..|...|.-.+..+.|++
T Consensus 54 ~~~~~ivvyC~~g~rs~~aa~~L~~~G~~~v~~l~GG~ 91 (141)
T 3ilm_A 54 EKSRDIYVYGAGDEQTSQAVNLLRSAGFEHVSELKGGL 91 (141)
T ss_dssp CTTSEEEEECSSHHHHHHHHHHHHHTTCCSEEECTTHH
T ss_pred CCCCeEEEEECCChHHHHHHHHHHHcCCCCEEEecCHH
Confidence 45678999999999999999999999844588899985
No 119
>3nhv_A BH2092 protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 2.50A {Bacillus halodurans} PDB: 3o3w_A
Probab=73.79 E-value=2.7 Score=31.32 Aligned_cols=37 Identities=11% Similarity=0.200 Sum_probs=31.7
Q ss_pred CCCCcEEEEeCch--HHHHHHHHHHhccCCceEEEecCCC
Q 028124 51 RPGLPMIVCCSSR--DELDAVCSAVSNLADISFSSLHSDL 88 (213)
Q Consensus 51 ~~~~~~IIF~~~~--~~~~~l~~~L~~~~~~~~~~lhg~~ 88 (213)
.+.+++||||.+- ..+...+..|+..| +++..+.|++
T Consensus 70 ~~~~~ivvyC~~g~~~rs~~aa~~L~~~G-~~v~~l~GG~ 108 (144)
T 3nhv_A 70 SKEKVIITYCWGPACNGATKAAAKFAQLG-FRVKELIGGI 108 (144)
T ss_dssp CTTSEEEEECSCTTCCHHHHHHHHHHHTT-CEEEEEESHH
T ss_pred CCCCeEEEEECCCCccHHHHHHHHHHHCC-CeEEEeCCcH
Confidence 3567899999987 58889999999998 5899999986
No 120
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=73.13 E-value=13 Score=27.15 Aligned_cols=47 Identities=26% Similarity=0.344 Sum_probs=39.1
Q ss_pred EEEEeCchHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhcc
Q 028124 56 MIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHT 103 (213)
Q Consensus 56 ~IIF~~~~~~~~~l~~~L~~~~~~~~~~lhg~~~~~~R~~~l~~Fr~g 103 (213)
.++|.....-...+...++..| +.++.++++.+.+.|.+-++.|...
T Consensus 5 fvvfssdpeilkeivreikrqg-vrvvllysdqdekrrrerleefekq 51 (162)
T 2l82_A 5 FVVFSSDPEILKEIVREIKRQG-VRVVLLYSDQDEKRRRERLEEFEKQ 51 (162)
T ss_dssp EEEEESCHHHHHHHHHHHHHTT-CEEEEEECCSCHHHHHHHHHHHHTT
T ss_pred EEEecCCHHHHHHHHHHHHhCC-eEEEEEecCchHHHHHHHHHHHHHc
Confidence 5677777777788888888887 8999999999988888889988764
No 121
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=72.53 E-value=5.7 Score=34.74 Aligned_cols=106 Identities=9% Similarity=0.090 Sum_probs=64.9
Q ss_pred EEEEecCcchHHH-HHHHHHHHhhcC----CCCCCcEEEEeCchHHHHHHHHHHhccC---CceEEEecCCCCHHHHHHH
Q 028124 25 FYVAVDRLQFKME-TLVELLHLVVAG----RRPGLPMIVCCSSRDELDAVCSAVSNLA---DISFSSLHSDLAETERTLI 96 (213)
Q Consensus 25 ~~~~~~~~~~K~~-~L~~ll~~~~~~----~~~~~~~IIF~~~~~~~~~l~~~L~~~~---~~~~~~lhg~~~~~~R~~~ 96 (213)
..+..+...=|-. .+.-++..+... ...+.++||.++|+.-+..+++.+++.+ .+++..++|+.+..++..
T Consensus 96 ~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~- 174 (434)
T 2db3_A 96 LMACAQTGSGKTAAFLLPILSKLLEDPHELELGRPQVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNE- 174 (434)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHHHSCCCCCTTCCSEEEECSSHHHHHHHHHHHHHHTTTSSCCCCEECTTSCHHHHHH-
T ss_pred EEEECCCCCCchHHHHHHHHHHHHhcccccccCCccEEEEecCHHHHHHHHHHHHHHhccCCcEEEEEECCCCHHHHHH-
Confidence 4444444433554 333344443221 1235689999999999999988887642 367888999988765443
Q ss_pred HHHHhcccccccccccccCCCCCcCCCCCCceeEEEEeCCCCC-cCcC-CCCCCCCCEEEEec
Q 028124 97 LEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLP-LLSS-GESAISARVLINYE 157 (213)
Q Consensus 97 l~~Fr~g~~~~~~~~~~~~~~~~~~~~~~~~~~iLV~Td~~~~-~~~r-Gld~~~v~~VI~yd 157 (213)
.+..+ .+|+|+|.-.+- .+.+ .+++..+++||.-+
T Consensus 175 --~l~~~------------------------~~Ivv~Tp~~l~~~l~~~~~~l~~~~~lVlDE 211 (434)
T 2db3_A 175 --CITRG------------------------CHVVIATPGRLLDFVDRTFITFEDTRFVVLDE 211 (434)
T ss_dssp --HHTTC------------------------CSEEEECHHHHHHHHHTTSCCCTTCCEEEEET
T ss_pred --HhhcC------------------------CCEEEEChHHHHHHHHhCCcccccCCeEEEcc
Confidence 33343 789999974110 0122 35677888887643
No 122
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=72.48 E-value=37 Score=28.43 Aligned_cols=106 Identities=14% Similarity=0.118 Sum_probs=63.6
Q ss_pred EEEEecCcchHHHH-HHHHHHHhhcCCCCCCcEEEEeCchHHHHHHHHHHhccC---CceEEEecCCCCHHHHHHHHHHH
Q 028124 25 FYVAVDRLQFKMET-LVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLA---DISFSSLHSDLAETERTLILEEF 100 (213)
Q Consensus 25 ~~~~~~~~~~K~~~-L~~ll~~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~---~~~~~~lhg~~~~~~R~~~l~~F 100 (213)
.++..+...=|-.. +.-++..+.. ...+.++||.|+++.-+..+++.++... ++.+..++|+....+... ..
T Consensus 61 ~li~a~TGsGKT~~~~~~~~~~~~~-~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~ 136 (400)
T 1s2m_A 61 ILARAKNGTGKTAAFVIPTLEKVKP-KLNKIQALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDIL---RL 136 (400)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHCCT-TSCSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCHHHHHH---HT
T ss_pred EEEECCCCcHHHHHHHHHHHHHHhh-ccCCccEEEEcCCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHH---Hh
Confidence 44455444335543 3333443211 2245689999999999998888887541 378889999887554322 22
Q ss_pred hcccccccccccccCCCCCcCCCCCCceeEEEEeCCCCC-cC-cCCCCCCCCCEEEEecC
Q 028124 101 RHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLP-LL-SSGESAISARVLINYEL 158 (213)
Q Consensus 101 r~g~~~~~~~~~~~~~~~~~~~~~~~~~~iLV~Td~~~~-~~-~rGld~~~v~~VI~yd~ 158 (213)
.. ..+|+|+|...+- .+ ....++.++++||.-+.
T Consensus 137 ~~------------------------~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEa 172 (400)
T 1s2m_A 137 NE------------------------TVHILVGTPGRVLDLASRKVADLSDCSLFIMDEA 172 (400)
T ss_dssp TS------------------------CCSEEEECHHHHHHHHHTTCSCCTTCCEEEEESH
T ss_pred cC------------------------CCCEEEEchHHHHHHHHhCCcccccCCEEEEeCc
Confidence 22 3789999953100 02 23456778888886543
No 123
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=72.43 E-value=13 Score=32.75 Aligned_cols=78 Identities=15% Similarity=0.100 Sum_probs=50.3
Q ss_pred CCcEEEEeCchHHHHHHHHHHhcc----CCceEEEecCCCCHHHHHHHHHHHhcccccccccccccCCCCCcCCCCCCce
Q 028124 53 GLPMIVCCSSRDELDAVCSAVSNL----ADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKS 128 (213)
Q Consensus 53 ~~~~IIF~~~~~~~~~l~~~L~~~----~~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (213)
..++||.|+++.-+..+++.+... + +.+..+||+.+...+. +.+..+ .
T Consensus 55 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~---~~~~~~------------------------~ 106 (556)
T 4a2p_A 55 KAKVVFLATKVPVYEQQKNVFKHHFERQG-YSVQGISGENFSNVSV---EKVIED------------------------S 106 (556)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGT-CCEEECCCC-----CH---HHHHHH------------------------C
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHHhcccC-ceEEEEeCCCCcchhH---HHhhCC------------------------C
Confidence 679999999999998888877664 5 7899999998655543 223332 7
Q ss_pred eEEEEeCCCCCc-CcCC-C-CCCCCCEEEEecC
Q 028124 129 HMIVVTDACLPL-LSSG-E-SAISARVLINYEL 158 (213)
Q Consensus 129 ~iLV~Td~~~~~-~~rG-l-d~~~v~~VI~yd~ 158 (213)
+|+|+|.-.+-. +.++ + .+..+++||.-+.
T Consensus 107 ~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEa 139 (556)
T 4a2p_A 107 DIIVVTPQILVNSFEDGTLTSLSIFTLMIFDEC 139 (556)
T ss_dssp SEEEECHHHHHHHHHSSSCCCSTTCSEEEEETG
T ss_pred CEEEECHHHHHHHHHhCcccccccCCEEEEECC
Confidence 799999752100 1122 3 6778888887543
No 124
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=72.39 E-value=9.9 Score=32.25 Aligned_cols=77 Identities=10% Similarity=0.090 Sum_probs=52.9
Q ss_pred CcEEEEeCchHHHHHHHHHHhcc---CCceEEEecCCCCHHHHHHHHHHHhcccccccccccccCCCCCcCCCCCCceeE
Q 028124 54 LPMIVCCSSRDELDAVCSAVSNL---ADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHM 130 (213)
Q Consensus 54 ~~~IIF~~~~~~~~~l~~~L~~~---~~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~~~~~~~~~~~~~~~~~~~~~~~~i 130 (213)
.++||.++++.-+..+++.+++. .++.+..++|+.+..+.. +.+..+ .+|
T Consensus 102 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~~~~~------------------------~~I 154 (417)
T 2i4i_A 102 PISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQI---RDLERG------------------------CHL 154 (417)
T ss_dssp CSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCHHHHH---HHHTTC------------------------CSE
T ss_pred ccEEEECCcHHHHHHHHHHHHHHhCcCCceEEEEECCCCHHHHH---HHhhCC------------------------CCE
Confidence 67999999999999988888653 237889999998766543 333343 789
Q ss_pred EEEeCCCCCc-C-cCCCCCCCCCEEEEec
Q 028124 131 IVVTDACLPL-L-SSGESAISARVLINYE 157 (213)
Q Consensus 131 LV~Td~~~~~-~-~rGld~~~v~~VI~yd 157 (213)
+|+|...+-. + ...+++..+++||.-+
T Consensus 155 ~v~Tp~~l~~~l~~~~~~~~~~~~iViDE 183 (417)
T 2i4i_A 155 LVATPGRLVDMMERGKIGLDFCKYLVLDE 183 (417)
T ss_dssp EEECHHHHHHHHHTTSBCCTTCCEEEESS
T ss_pred EEEChHHHHHHHHcCCcChhhCcEEEEEC
Confidence 9999731100 1 2235677888887643
No 125
>2lnd_A De novo designed protein, PFK fold; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=71.81 E-value=22 Score=24.54 Aligned_cols=62 Identities=19% Similarity=0.395 Sum_probs=44.1
Q ss_pred HHHHHHHHHhhcCCCCCCcEEEEeC--chHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhcc
Q 028124 37 ETLVELLHLVVAGRRPGLPMIVCCS--SRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHT 103 (213)
Q Consensus 37 ~~L~~ll~~~~~~~~~~~~~IIF~~--~~~~~~~l~~~L~~~~~~~~~~lhg~~~~~~R~~~l~~Fr~g 103 (213)
+-++++++.+ ..++++.+||+| +...+.++...-++.| +.-..+.+. ++++-.+-+++|...
T Consensus 38 qdirdiiksm---kdngkplvvfvngasqndvnefqneakkeg-vsydvlkst-dpeeltqrvreflkt 101 (112)
T 2lnd_A 38 QDIRDIIKSM---KDNGKPLVVFVNGASQNDVNEFQNEAKKEG-VSYDVLKST-DPEELTQRVREFLKT 101 (112)
T ss_dssp HHHHHHHHHH---TTCCSCEEEEECSCCHHHHHHHHHHHHHHT-CEEEEEECC-CHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHH---HhcCCeEEEEecCcccccHHHHHHHHHhcC-cchhhhccC-CHHHHHHHHHHHHHh
Confidence 4566777764 357899999999 4556667777777777 777777764 566666777777663
No 126
>1vee_A Proline-rich protein family; hypothetical protein, structural genomics, rhodanese domain, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} PDB: 2dcq_A
Probab=70.88 E-value=3.6 Score=30.06 Aligned_cols=38 Identities=8% Similarity=-0.052 Sum_probs=32.1
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhccCCceEEEecCCCC
Q 028124 52 PGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLA 89 (213)
Q Consensus 52 ~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~lhg~~~ 89 (213)
+.+++|+||.+-.++...+..|...|+-.+..+.|++.
T Consensus 73 ~~~~ivv~C~sG~RS~~aa~~L~~~G~~~v~~l~GG~~ 110 (134)
T 1vee_A 73 ENTTLYILDKFDGNSELVAELVALNGFKSAYAIKDGAE 110 (134)
T ss_dssp GGCEEEEECSSSTTHHHHHHHHHHHTCSEEEECTTTTT
T ss_pred CCCEEEEEeCCCCcHHHHHHHHHHcCCcceEEecCCcc
Confidence 46899999999988889999999888436888999973
No 127
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=69.22 E-value=17 Score=34.43 Aligned_cols=77 Identities=13% Similarity=0.047 Sum_probs=49.0
Q ss_pred CCcEEEEeCchHHHHHHHHHHhcc----CCceEEEecCCCCHHHHHHHHHHHhcccccccccccccCCCCCcCCCCCCce
Q 028124 53 GLPMIVCCSSRDELDAVCSAVSNL----ADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKS 128 (213)
Q Consensus 53 ~~~~IIF~~~~~~~~~l~~~L~~~----~~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (213)
+.++||.|+++.-+..+...++.. + +.+..+||+.+...+.. .+..+ .
T Consensus 296 ~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~~~-~~v~~~~g~~~~~~~~~---~~~~~------------------------~ 347 (797)
T 4a2q_A 296 KAKVVFLATKVPVYEQQKNVFKHHFERQG-YSVQGISGENFSNVSVE---KVIED------------------------S 347 (797)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGT-CCEEEECCC-----CHH---HHHHT------------------------C
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHhcccCC-ceEEEEeCCcchhhhHH---HhhCC------------------------C
Confidence 789999999999999888877664 5 89999999986655432 23332 7
Q ss_pred eEEEEeCCCCCc-CcC-CC-CCCCCCEEEEec
Q 028124 129 HMIVVTDACLPL-LSS-GE-SAISARVLINYE 157 (213)
Q Consensus 129 ~iLV~Td~~~~~-~~r-Gl-d~~~v~~VI~yd 157 (213)
+|+|+|.-.+-. +.+ .+ .+.++++||.-+
T Consensus 348 ~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDE 379 (797)
T 4a2q_A 348 DIIVVTPQILVNSFEDGTLTSLSIFTLMIFDE 379 (797)
T ss_dssp SEEEECHHHHHHHHHSSSCCCGGGCSEEEETT
T ss_pred CEEEEchHHHHHHHHhccccccccCCEEEEEC
Confidence 899999641000 112 23 566778888643
No 128
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=67.40 E-value=16 Score=28.30 Aligned_cols=105 Identities=11% Similarity=0.162 Sum_probs=61.0
Q ss_pred EEEEecCcchHHHH-HHHHHHHhhcCCCCCCcEEEEeCchHHHHHHHHHHhccC-------CceEEEecCCCCHHHHHHH
Q 028124 25 FYVAVDRLQFKMET-LVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLA-------DISFSSLHSDLAETERTLI 96 (213)
Q Consensus 25 ~~~~~~~~~~K~~~-L~~ll~~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~-------~~~~~~lhg~~~~~~R~~~ 96 (213)
..+..+...=|-.. +.-++..+.. ...+.++||.|+++.-+..+++.+.... .+.+..++|+.+..+..
T Consensus 44 ~lv~a~TGsGKT~~~~~~~l~~l~~-~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-- 120 (219)
T 1q0u_A 44 MVGQSQTGTGKTHAYLLPIMEKIKP-ERAEVQAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKAL-- 120 (219)
T ss_dssp EEEECCSSHHHHHHHHHHHHHHCCT-TSCSCCEEEECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTT--
T ss_pred EEEECCCCChHHHHHHHHHHHHHHh-CcCCceEEEEcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHH--
Confidence 44555555446554 3334444221 2345789999999999998888776531 36788889886543221
Q ss_pred HHHHhcccccccccccccCCCCCcCCCCCCceeEEEEeCCCCCc-Cc-CCCCCCCCCEEEEec
Q 028124 97 LEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPL-LS-SGESAISARVLINYE 157 (213)
Q Consensus 97 l~~Fr~g~~~~~~~~~~~~~~~~~~~~~~~~~~iLV~Td~~~~~-~~-rGld~~~v~~VI~yd 157 (213)
+.++. ..+|+|+|...+-. +. ..+++..+++||.-+
T Consensus 121 -~~~~~------------------------~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViDE 158 (219)
T 1q0u_A 121 -EKLNV------------------------QPHIVIGTPGRINDFIREQALDVHTAHILVVDE 158 (219)
T ss_dssp -CCCSS------------------------CCSEEEECHHHHHHHHHTTCCCGGGCCEEEECS
T ss_pred -HHcCC------------------------CCCEEEeCHHHHHHHHHcCCCCcCcceEEEEcC
Confidence 11111 37899999631000 12 235667788877633
No 129
>1urh_A 3-mercaptopyruvate sulfurtransferase; rhodanese; 2.8A {Escherichia coli} SCOP: c.46.1.2 c.46.1.2
Probab=64.78 E-value=11 Score=30.72 Aligned_cols=39 Identities=21% Similarity=0.213 Sum_probs=33.2
Q ss_pred CCCCcEEEEeCchHHHHHHHHHHhccCCceEEEecCCCC
Q 028124 51 RPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLA 89 (213)
Q Consensus 51 ~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~lhg~~~ 89 (213)
.+.+++|+||.+-.++...+..|...|.-.+..+.|++.
T Consensus 228 ~~~~~ivv~C~~G~rs~~a~~~L~~~G~~~v~~~~GG~~ 266 (280)
T 1urh_A 228 SYDKPIIVSCGSGVTAAVVLLALATLDVPNVKLYDGAWS 266 (280)
T ss_dssp CSSSCEEEECCSSSTHHHHHHHHHHTTCSSCEEECCSCC
T ss_pred CCCCCEEEECChHHHHHHHHHHHHHcCCCCceeeCChHH
Confidence 456899999999999999999999888435888999885
No 130
>3i2v_A Adenylyltransferase and sulfurtransferase MOCS3; rhodanese, UBA4, structural genomics, ubiquitin biology, structural genomics consortium, SGC; 1.25A {Homo sapiens}
Probab=64.69 E-value=4.1 Score=28.93 Aligned_cols=36 Identities=14% Similarity=0.361 Sum_probs=30.2
Q ss_pred CcEEEEeCchHHHHHHHHHHhcc------CCceEEEecCCCC
Q 028124 54 LPMIVCCSSRDELDAVCSAVSNL------ADISFSSLHSDLA 89 (213)
Q Consensus 54 ~~~IIF~~~~~~~~~l~~~L~~~------~~~~~~~lhg~~~ 89 (213)
.++|+||.+-..+...+..|... |+..+..+.|++.
T Consensus 73 ~~ivv~C~~G~rs~~a~~~L~~~gg~~~~G~~~v~~l~GG~~ 114 (127)
T 3i2v_A 73 VPIYVICKLGNDSQKAVKILQSLSAAQELDPLTVRDVVGGLM 114 (127)
T ss_dssp EEEEEECSSSSHHHHHHHHHHHHHHTTSSSCEEEEEETTHHH
T ss_pred CeEEEEcCCCCcHHHHHHHHHHhhccccCCCceEEEecCCHH
Confidence 48999999988888889999877 5567888999864
No 131
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=63.96 E-value=58 Score=26.51 Aligned_cols=105 Identities=12% Similarity=0.105 Sum_probs=63.1
Q ss_pred EEEEEecCcchHHHHHHHHHHHhhcCCCCCCcEEEEeCchHHHHHHHHHHhcc---CCceEEEecCCCCHHHHHHHHHHH
Q 028124 24 HFYVAVDRLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNL---ADISFSSLHSDLAETERTLILEEF 100 (213)
Q Consensus 24 ~~~~~~~~~~~K~~~L~~ll~~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~---~~~~~~~lhg~~~~~~R~~~l~~F 100 (213)
..++..+...=|--.....+..... ..++.++||.|+++.-++.+++.+... ..+.+..++|+.+..+.... +
T Consensus 46 ~~l~~~~TGsGKT~~~~~~~~~~~~-~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~---~ 121 (367)
T 1hv8_A 46 NIVAQARTGSGKTASFAIPLIELVN-ENNGIEAIILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKA---L 121 (367)
T ss_dssp EEEEECCSSSSHHHHHHHHHHHHSC-SSSSCCEEEECSCHHHHHHHHHHHHHHHCSSCCCEEEECTTSCHHHHHHH---H
T ss_pred CEEEECCCCChHHHHHHHHHHHHhc-ccCCCcEEEEcCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHhh---c
Confidence 3445555444365544333322221 235679999999999999888888763 23678889998876554332 2
Q ss_pred hcccccccccccccCCCCCcCCCCCCceeEEEEeCCCCCc--CcCCCCCCCCCEEEEec
Q 028124 101 RHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPL--LSSGESAISARVLINYE 157 (213)
Q Consensus 101 r~g~~~~~~~~~~~~~~~~~~~~~~~~~~iLV~Td~~~~~--~~rGld~~~v~~VI~yd 157 (213)
.. .+++|+|.-.+-. ....+++.+.++||.-+
T Consensus 122 ~~-------------------------~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDE 155 (367)
T 1hv8_A 122 KN-------------------------ANIVVGTPGRILDHINRGTLNLKNVKYFILDE 155 (367)
T ss_dssp HT-------------------------CSEEEECHHHHHHHHHTTCSCTTSCCEEEEET
T ss_pred CC-------------------------CCEEEecHHHHHHHHHcCCcccccCCEEEEeC
Confidence 22 6789998641100 12234567778777644
No 132
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=63.47 E-value=17 Score=35.39 Aligned_cols=42 Identities=7% Similarity=0.014 Sum_probs=33.9
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhcc----CCceEEEecCCCCHHHHH
Q 028124 52 PGLPMIVCCSSRDELDAVCSAVSNL----ADISFSSLHSDLAETERT 94 (213)
Q Consensus 52 ~~~~~IIF~~~~~~~~~l~~~L~~~----~~~~~~~lhg~~~~~~R~ 94 (213)
.+.+++|.|+|+.-|...++.+... | +++..+.|+++...|.
T Consensus 114 ~g~~vlVltPTreLA~Q~~e~~~~l~~~lg-l~v~~i~GG~~~~~r~ 159 (853)
T 2fsf_A 114 TGKGVHVVTVNDYLAQRDAENNRPLFEFLG-LTVGINLPGMPAPAKR 159 (853)
T ss_dssp TSSCCEEEESSHHHHHHHHHHHHHHHHHTT-CCEEECCTTCCHHHHH
T ss_pred cCCcEEEEcCCHHHHHHHHHHHHHHHHhcC-CeEEEEeCCCCHHHHH
Confidence 4578999999999888877776543 5 8999999999976554
No 133
>2b4a_A BH3024; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.42A {Bacillus halodurans} SCOP: c.23.1.1
Probab=61.25 E-value=37 Score=23.42 Aligned_cols=114 Identities=11% Similarity=0.057 Sum_probs=63.8
Q ss_pred EEEecCcchHHHHHHHHHHHhhcCCCCCCcEEEEeCchHHHHHHHHHHhc-cCCceEEEecCCCCHHHHHHHHHHHhccc
Q 028124 26 YVAVDRLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSN-LADISFSSLHSDLAETERTLILEEFRHTA 104 (213)
Q Consensus 26 ~~~~~~~~~K~~~L~~ll~~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~-~~~~~~~~lhg~~~~~~R~~~l~~Fr~g~ 104 (213)
.+.++++..-...+...|+. .+-. +..+.+... ....+.. .. ..++.+.-.|+......+++.++...
T Consensus 18 ilivdd~~~~~~~l~~~L~~------~g~~-v~~~~~~~~---al~~l~~~~~-~dlvilD~~l~~~~g~~~~~~l~~~~ 86 (138)
T 2b4a_A 18 VTLVEDEPSHATLIQYHLNQ------LGAE-VTVHPSGSA---FFQHRSQLST-CDLLIVSDQLVDLSIFSLLDIVKEQT 86 (138)
T ss_dssp EEEECSCHHHHHHHHHHHHH------TTCE-EEEESSHHH---HHHTGGGGGS-CSEEEEETTCTTSCHHHHHHHHTTSS
T ss_pred EEEECCCHHHHHHHHHHHHH------cCCE-EEEeCCHHH---HHHHHHhCCC-CCEEEEeCCCCCCCHHHHHHHHHhhC
Confidence 45567666567777777776 1233 344444333 3344544 43 56777777776666677888887631
Q ss_pred ccccccccccCCCCCcCCCCCCceeEEEEe-CCCCCcCcCCCCCCCCCEEEEecCCCChHHHHHhhccccCCCC
Q 028124 105 MKWNQKVTEQSGDESETGKDEHKSHMIVVT-DACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAADG 177 (213)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~iLV~T-d~~~~~~~rGld~~~v~~VI~yd~P~~~~~yi~R~GR~~~~~g 177 (213)
....+++.| .. ..... .... ..-...-|.+.+.+.+++.+..+..|
T Consensus 87 ---------------------~~~~ii~ls~~~----~~~~~-~~~~-~~~~l~KP~~~~~L~~~i~~~~~~~~ 133 (138)
T 2b4a_A 87 ---------------------KQPSVLILTTGR----HELIE-SSEH-NLSYLQKPFAISELRAAIDYHKPSMG 133 (138)
T ss_dssp ---------------------SCCEEEEEESCC------CCC-CSSS-CEEEEESSCCHHHHHHHHHHTCCC--
T ss_pred ---------------------CCCCEEEEECCC----CCHHH-HHHH-HHheeeCCCCHHHHHHHHHHHHHhcC
Confidence 136777777 54 33322 2222 11123457788999888877644434
No 134
>3tg1_B Dual specificity protein phosphatase 10; kinase/rhodanese-like domain, docking interaction, transfera hydrolase complex; 2.71A {Homo sapiens}
Probab=61.11 E-value=7.7 Score=29.06 Aligned_cols=35 Identities=17% Similarity=0.119 Sum_probs=29.8
Q ss_pred CCcEEEEeCch---------HHHHHHHHHHhccCCceEEEecCCC
Q 028124 53 GLPMIVCCSSR---------DELDAVCSAVSNLADISFSSLHSDL 88 (213)
Q Consensus 53 ~~~~IIF~~~~---------~~~~~l~~~L~~~~~~~~~~lhg~~ 88 (213)
.+++|+||.+- ..+..++..|...| +.+..+.|++
T Consensus 93 ~~~IVvyc~~g~~~~~~~~~~~s~~a~~~L~~~G-~~v~~L~GG~ 136 (158)
T 3tg1_B 93 SKEIIVYDENTNEPSRVMPSQPLHIVLESLKREG-KEPLVLKGGL 136 (158)
T ss_dssp TSCEEEECSCCSCTTSCCSSSHHHHHHHHHHTTT-CCEEEETTHH
T ss_pred CCeEEEEECCCCcccccCcchHHHHHHHHHHhCC-CcEEEeCCcH
Confidence 67999999987 45788899999888 6888999985
No 135
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=60.76 E-value=26 Score=34.02 Aligned_cols=43 Identities=7% Similarity=0.080 Sum_probs=35.0
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhcc----CCceEEEecCCCCHHHHHH
Q 028124 52 PGLPMIVCCSSRDELDAVCSAVSNL----ADISFSSLHSDLAETERTL 95 (213)
Q Consensus 52 ~~~~~IIF~~~~~~~~~l~~~L~~~----~~~~~~~lhg~~~~~~R~~ 95 (213)
.+.+++|.|+|+.-|...++++... | +++..+.|+++.++|..
T Consensus 123 ~g~~vlVltptreLA~qd~e~~~~l~~~lg-l~v~~i~gg~~~~~r~~ 169 (844)
T 1tf5_A 123 TGKGVHVVTVNEYLASRDAEQMGKIFEFLG-LTVGLNLNSMSKDEKRE 169 (844)
T ss_dssp TSSCEEEEESSHHHHHHHHHHHHHHHHHTT-CCEEECCTTSCHHHHHH
T ss_pred cCCCEEEEeCCHHHHHHHHHHHHHHHhhcC-CeEEEEeCCCCHHHHHH
Confidence 4578999999999998888777543 5 89999999999876654
No 136
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=60.58 E-value=10 Score=32.01 Aligned_cols=80 Identities=15% Similarity=0.140 Sum_probs=52.2
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhccC---CceEEEecCCCCHHHHHHHHHHHhcccccccccccccCCCCCcCCCCCCce
Q 028124 52 PGLPMIVCCSSRDELDAVCSAVSNLA---DISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKS 128 (213)
Q Consensus 52 ~~~~~IIF~~~~~~~~~l~~~L~~~~---~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (213)
...++||.++++.-+..+++.+...+ ...+..++|+.+...+ .+.+..+ ..
T Consensus 107 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~-----------------------~~ 160 (414)
T 3eiq_A 107 KATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAE---VQKLQME-----------------------AP 160 (414)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHGGGSCCCEEECCCCTTHHHH---HHHHTTT-----------------------CC
T ss_pred CceeEEEEeChHHHHHHHHHHHHHHhcccCceEEEEECCcchHHH---HHHHhcC-----------------------CC
Confidence 56789999999999998888887642 2677788887654443 3444444 37
Q ss_pred eEEEEeCCCCC-cC-cCCCCCCCCCEEEEec
Q 028124 129 HMIVVTDACLP-LL-SSGESAISARVLINYE 157 (213)
Q Consensus 129 ~iLV~Td~~~~-~~-~rGld~~~v~~VI~yd 157 (213)
+|+|+|.-.+- .+ ...++...+++||.-+
T Consensus 161 ~iiv~T~~~l~~~l~~~~~~~~~~~~vViDE 191 (414)
T 3eiq_A 161 HIIVGTPGRVFDMLNRRYLSPKYIKMFVLDE 191 (414)
T ss_dssp SEEEECHHHHHHHHHHTSSCSTTCCEEEECS
T ss_pred CEEEECHHHHHHHHHcCCcccccCcEEEEEC
Confidence 89999953100 01 2334566777777643
No 137
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=59.74 E-value=89 Score=28.03 Aligned_cols=74 Identities=8% Similarity=0.073 Sum_probs=50.6
Q ss_pred eEEEEEecCcchHHHHHHHHHHHhhcCCCCCCcEEEEeCchHHHHHHHHHHhcc-CCceEEEecCC-------C-C----
Q 028124 23 RHFYVAVDRLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNL-ADISFSSLHSD-------L-A---- 89 (213)
Q Consensus 23 ~~~~~~~~~~~~K~~~L~~ll~~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~-~~~~~~~lhg~-------~-~---- 89 (213)
++.+.-+.... |.-++..+++. ..++++|.|++...|+.+++.|+.. ++ .+..+-.. . +
T Consensus 16 ~~~l~g~~gs~-ka~~~a~l~~~------~~~p~lvv~~~~~~A~~l~~~l~~~~~~-~v~~fp~~e~lpyd~~~p~~~~ 87 (483)
T 3hjh_A 16 QRLLGELTGAA-CATLVAEIAER------HAGPVVLIAPDMQNALRLHDEISQFTDQ-MVMNLADWETLPYDSFSPHQDI 87 (483)
T ss_dssp EEEEECCCTTH-HHHHHHHHHHH------SSSCEEEEESSHHHHHHHHHHHHHTCSS-CEEECCCCCSCTTCSSCCCHHH
T ss_pred eEEEeCCCchH-HHHHHHHHHHH------hCCCEEEEeCCHHHHHHHHHHHHhhCCC-cEEEEeCcccccccccCCChHH
Confidence 44444455554 88888888876 3568999999999999999999865 32 34333222 1 1
Q ss_pred HHHHHHHHHHHhccc
Q 028124 90 ETERTLILEEFRHTA 104 (213)
Q Consensus 90 ~~~R~~~l~~Fr~g~ 104 (213)
..+|..++.++..+.
T Consensus 88 ~~~Rl~~l~~L~~~~ 102 (483)
T 3hjh_A 88 ISSRLSTLYQLPTMQ 102 (483)
T ss_dssp HHHHHHHHHHGGGCC
T ss_pred HHHHHHHHHHHHhCC
Confidence 146888888887763
No 138
>2eg4_A Probable thiosulfate sulfurtransferase; structural genomics, NPPSFA, national Pro protein structural and functional analyses; 1.70A {Thermus thermophilus} PDB: 2eg3_A
Probab=59.26 E-value=8 Score=30.70 Aligned_cols=38 Identities=16% Similarity=0.263 Sum_probs=33.5
Q ss_pred CCCCcEEEEeCchHHHHHHHHHHhccCCceEEEecCCCC
Q 028124 51 RPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLA 89 (213)
Q Consensus 51 ~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~lhg~~~ 89 (213)
.+.+++|+||.+-.++...+..|...| ..+..+.|++.
T Consensus 182 ~~~~~iv~~C~~G~rs~~a~~~L~~~G-~~v~~~~Gg~~ 219 (230)
T 2eg4_A 182 QPGQEVGVYCHSGARSAVAFFVLRSLG-VRARNYLGSMH 219 (230)
T ss_dssp CTTCEEEEECSSSHHHHHHHHHHHHTT-CEEEECSSHHH
T ss_pred CCCCCEEEEcCChHHHHHHHHHHHHcC-CCcEEecCcHH
Confidence 456899999999999999999999998 78999999863
No 139
>4f67_A UPF0176 protein LPG2838; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium; 1.79A {Legionella pneumophila subsp}
Probab=58.67 E-value=9.9 Score=31.65 Aligned_cols=39 Identities=10% Similarity=0.177 Sum_probs=33.5
Q ss_pred CCCCcEEEEeCchHHHHHHHHHHhccCCceEEEecCCCC
Q 028124 51 RPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLA 89 (213)
Q Consensus 51 ~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~lhg~~~ 89 (213)
.+.+++++||.+-..+...+..|...|.-.+..+.|++.
T Consensus 179 ~kdk~IVvyC~~G~RS~~Aa~~L~~~Gf~nV~~L~GGi~ 217 (265)
T 4f67_A 179 KKDKKIAMFCTGGIRCEKTTAYMKELGFEHVYQLHDGIL 217 (265)
T ss_dssp GTTSCEEEECSSSHHHHHHHHHHHHHTCSSEEEETTHHH
T ss_pred CCCCeEEEEeCCChHHHHHHHHHHHcCCCCEEEecCHHH
Confidence 456899999999999999999999998446888999864
No 140
>1e0c_A Rhodanese, sulfurtransferase; sulfur metabolism, thiosulfate:cyanide sulfurtransferase; 1.8A {Azotobacter vinelandii} SCOP: c.46.1.2 c.46.1.2 PDB: 1h4k_X 1h4m_X
Probab=58.53 E-value=11 Score=30.50 Aligned_cols=38 Identities=8% Similarity=0.142 Sum_probs=32.1
Q ss_pred CCCCcEEEEeCchHHHHHHHHHHhccCCceEEEecCCC
Q 028124 51 RPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDL 88 (213)
Q Consensus 51 ~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~lhg~~ 88 (213)
.+.+++|+||.+-.++...+..|...|.-.+..+.|++
T Consensus 221 ~~~~~ivvyC~~G~rs~~a~~~L~~~G~~~v~~l~GG~ 258 (271)
T 1e0c_A 221 TPDKEIVTHCQTHHRSGLTYLIAKALGYPRVKGYAGSW 258 (271)
T ss_dssp CTTSEEEEECSSSSHHHHHHHHHHHTTCSCEEECSSHH
T ss_pred CCCCCEEEECCchHHHHHHHHHHHHcCCCCceeeCCcH
Confidence 45789999999998999999999988843588888885
No 141
>3hzu_A Thiosulfate sulfurtransferase SSEA; niaid, ssgcid, infectious disease, transferase structural genomics; 2.10A {Mycobacterium tuberculosis} PDB: 3p3a_A
Probab=58.36 E-value=15 Score=30.84 Aligned_cols=49 Identities=6% Similarity=-0.000 Sum_probs=36.3
Q ss_pred HHHHHHHHhhcCCCCCCcEEEEeCchH-HHHHHHHHHhccCCceEEEecCCC
Q 028124 38 TLVELLHLVVAGRRPGLPMIVCCSSRD-ELDAVCSAVSNLADISFSSLHSDL 88 (213)
Q Consensus 38 ~L~~ll~~~~~~~~~~~~~IIF~~~~~-~~~~l~~~L~~~~~~~~~~lhg~~ 88 (213)
.|.+.+..+ + -.+..++||||.+-. .+...+..|+..|+-.+..|.|++
T Consensus 98 ~~~~~l~~l-g-i~~~~~vVvyc~~g~~~a~~a~~~L~~~G~~~V~~L~GG~ 147 (318)
T 3hzu_A 98 QFAELMDRK-G-IARDDTVVIYGDKSNWWAAYALWVFTLFGHADVRLLNGGR 147 (318)
T ss_dssp HHHHHHHHT-T-CCTTCEEEEECSGGGHHHHHHHHHHHHTTCSCEEEETTHH
T ss_pred HHHHHHHHc-C-CCCCCeEEEECCCCCccHHHHHHHHHHcCCCceEEccCCH
Confidence 455555542 1 245689999999766 788899999998854688999986
No 142
>3aay_A Putative thiosulfate sulfurtransferase; sulfurtranserase, structural genomics, PSI, structure initiative; 1.90A {Mycobacterium tuberculosis} PDB: 3aax_A 3hwi_A
Probab=57.94 E-value=20 Score=28.97 Aligned_cols=49 Identities=10% Similarity=0.111 Sum_probs=35.7
Q ss_pred HHHHHHHHhhcCCCCCCcEEEEeCchHHHHHHHHHHhc-cCCceEEEecCCC
Q 028124 38 TLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSN-LADISFSSLHSDL 88 (213)
Q Consensus 38 ~L~~ll~~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~-~~~~~~~~lhg~~ 88 (213)
.|.+.+... + -.+.+++|+||.+-..+...+..|.. .|.-.+..+.|++
T Consensus 213 ~l~~~~~~~-~-~~~~~~iv~yC~~G~rs~~a~~~L~~~~G~~~v~~l~GG~ 262 (277)
T 3aay_A 213 ELAKLYADA-G-LDNSKETIAYCRIGERSSHTWFVLRELLGHQNVKNYDGSW 262 (277)
T ss_dssp HHHHHHHHH-T-CCTTSCEEEECSSHHHHHHHHHHHHTTSCCSCEEEESSHH
T ss_pred HHHHHHHHc-C-CCCCCCEEEEcCcHHHHHHHHHHHHHHcCCCcceeeCchH
Confidence 445555432 1 24568999999999999889999985 7843588899985
No 143
>3dmn_A Putative DNA helicase; APC89291.2, lactobacillus plantarum WCFS1, STR genomics, PSI-2, midwest center for structural genomics; HET: MSE; 1.66A {Lactobacillus plantarum}
Probab=57.42 E-value=51 Score=24.85 Aligned_cols=89 Identities=15% Similarity=0.162 Sum_probs=57.8
Q ss_pred EEEEecCcchHHHHHHHHHHHhhcCCCCCCcEEEEeCchHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhccc
Q 028124 25 FYVAVDRLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTA 104 (213)
Q Consensus 25 ~~~~~~~~~~K~~~L~~ll~~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~lhg~~~~~~R~~~l~~Fr~g~ 104 (213)
.+..+.+.+.-.+.+.+.++.... ....+-|.|.+...+..+.+.|...| +.+..+.++-. .|
T Consensus 36 ~~~~~~~~~~e~~~i~~~I~~~~~---g~~~iAVL~r~~~~~~~l~~~L~~~g-i~~~~l~~~~~---------~~---- 98 (174)
T 3dmn_A 36 NVVVTPNFEAGVDQVVDQLAMNDS---ERDTTAIIGKSLAECEALTKALKARG-EQVTLIQTENQ---------RL---- 98 (174)
T ss_dssp EEEEESSHHHHHHHHHHHHHHHHH---TTCCEEEEESSHHHHHHHHHHHHTTT-CCEEECSSCC----------CC----
T ss_pred EEEEeCCHHHHHHHHHHHHHHhcc---CCCcEEEEecCHHHHHHHHHHHHHcC-Ccceeeccccc---------cc----
Confidence 344455544456666666654221 25678888899999999999998876 67666665321 01
Q ss_pred ccccccccccCCCCCcCCCCCCceeEEEEeCCCCCcCcCCCCCCCCCEEEEecCC
Q 028124 105 MKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELP 159 (213)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~rGld~~~v~~VI~yd~P 159 (213)
+..+.|.|-- .+.|+.+ +.||.+++.
T Consensus 99 ----------------------~~~v~v~t~~----~~KGlEf---~~V~~~~~~ 124 (174)
T 3dmn_A 99 ----------------------APGVIVVPSF----LAKGLEF---DAVIVWNAN 124 (174)
T ss_dssp ----------------------CSSEEEEEGG----GCTTCCE---EEEEEETCB
T ss_pred ----------------------CCCeEEEEcc----ccCCcCC---CEEEEecCC
Confidence 1458888888 8999874 556666643
No 144
>1urh_A 3-mercaptopyruvate sulfurtransferase; rhodanese; 2.8A {Escherichia coli} SCOP: c.46.1.2 c.46.1.2
Probab=57.00 E-value=13 Score=30.36 Aligned_cols=50 Identities=14% Similarity=0.014 Sum_probs=36.2
Q ss_pred HHHHHHHHHhhcCCCCCCcEEEEeCchHH-HHHHHHHHhccCCceEEEecCCC
Q 028124 37 ETLVELLHLVVAGRRPGLPMIVCCSSRDE-LDAVCSAVSNLADISFSSLHSDL 88 (213)
Q Consensus 37 ~~L~~ll~~~~~~~~~~~~~IIF~~~~~~-~~~l~~~L~~~~~~~~~~lhg~~ 88 (213)
+.+.+.+..+ + -.+..++||||.+-.. +..++..|+..|+-.+..|.|++
T Consensus 72 ~~~~~~~~~~-g-i~~~~~ivvyc~~g~~~a~~a~~~L~~~G~~~v~~l~GG~ 122 (280)
T 1urh_A 72 ETFAVAMREL-G-VNQDKHLIVYDEGNLFSAPRAWWMLRTFGVEKVSILGGGL 122 (280)
T ss_dssp HHHHHHHHHT-T-CCTTSEEEEECSSSCSSHHHHHHHHHHTTCSCEEEETTHH
T ss_pred HHHHHHHHHc-C-CCCCCeEEEECCCCCccHHHHHHHHHHcCCCCEEEecCCH
Confidence 3445555542 1 1457899999998666 88889999998844688999985
No 145
>1uar_A Rhodanese; sulfurtransferase, riken structural genomics/PROT initiative, RSGI, structural genomics, transferase; 1.70A {Thermus thermophilus} SCOP: c.46.1.2 c.46.1.2
Probab=55.96 E-value=20 Score=29.12 Aligned_cols=50 Identities=12% Similarity=0.115 Sum_probs=36.5
Q ss_pred HHHHHHHHHhhcCCCCCCcEEEEeCchHHHHHHHHHHh-ccCCceEEEecCCC
Q 028124 37 ETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVS-NLADISFSSLHSDL 88 (213)
Q Consensus 37 ~~L~~ll~~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~-~~~~~~~~~lhg~~ 88 (213)
+.|.+.+... + -.+.+++|+||.+-..+...+..|. ..|.-.+..+.|++
T Consensus 219 ~~l~~~~~~~-g-~~~~~~ivvyC~~G~rs~~a~~~L~~~~G~~~v~~l~GG~ 269 (285)
T 1uar_A 219 EELRALYEPL-G-ITKDKDIVVYCRIAERSSHSWFVLKYLLGYPHVKNYDGSW 269 (285)
T ss_dssp HHHHHHHGGG-T-CCTTSEEEEECSSHHHHHHHHHHHHTTSCCSCEEEESSHH
T ss_pred HHHHHHHHHc-C-CCCCCCEEEECCchHHHHHHHHHHHHHcCCCCcceeCchH
Confidence 3444555441 1 2456889999999989999999998 78843688899985
No 146
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=55.45 E-value=37 Score=33.35 Aligned_cols=43 Identities=9% Similarity=0.118 Sum_probs=34.6
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhc----cCCceEEEecCCCCHHHHHH
Q 028124 52 PGLPMIVCCSSRDELDAVCSAVSN----LADISFSSLHSDLAETERTL 95 (213)
Q Consensus 52 ~~~~~IIF~~~~~~~~~l~~~L~~----~~~~~~~~lhg~~~~~~R~~ 95 (213)
.+.+++|.|+|+.-|...++++.. .| +++..+.|+++.++|..
T Consensus 151 ~g~~v~VvTpTreLA~Qdae~m~~l~~~lG-Lsv~~i~gg~~~~~r~~ 197 (922)
T 1nkt_A 151 AGNGVHIVTVNDYLAKRDSEWMGRVHRFLG-LQVGVILATMTPDERRV 197 (922)
T ss_dssp TTSCEEEEESSHHHHHHHHHHHHHHHHHTT-CCEEECCTTCCHHHHHH
T ss_pred hCCCeEEEeCCHHHHHHHHHHHHHHHhhcC-CeEEEEeCCCCHHHHHH
Confidence 357899999999988877777754 36 89999999999876654
No 147
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=55.34 E-value=24 Score=34.34 Aligned_cols=77 Identities=13% Similarity=0.047 Sum_probs=48.2
Q ss_pred CCcEEEEeCchHHHHHHHHHHhcc----CCceEEEecCCCCHHHHHHHHHHHhcccccccccccccCCCCCcCCCCCCce
Q 028124 53 GLPMIVCCSSRDELDAVCSAVSNL----ADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKS 128 (213)
Q Consensus 53 ~~~~IIF~~~~~~~~~l~~~L~~~----~~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (213)
+.++||.|+++.-+..++..++.. + +.+..+||+.+...+.. .+..+ .
T Consensus 296 ~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~-~~v~~~~G~~~~~~~~~---~~~~~------------------------~ 347 (936)
T 4a2w_A 296 KAKVVFLATKVPVYEQQKNVFKHHFERQG-YSVQGISGENFSNVSVE---KVIED------------------------S 347 (936)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHHTTT-CCEEEECCC-----CCH---HHHHH------------------------C
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHHhcccC-ceEEEEECCcchhhHHH---HhccC------------------------C
Confidence 678999999999998888877664 5 89999999986554422 22232 7
Q ss_pred eEEEEeCCCCCc-CcC-CC-CCCCCCEEEEec
Q 028124 129 HMIVVTDACLPL-LSS-GE-SAISARVLINYE 157 (213)
Q Consensus 129 ~iLV~Td~~~~~-~~r-Gl-d~~~v~~VI~yd 157 (213)
+|+|+|.-.+-. +.+ .+ .+.++++||--+
T Consensus 348 ~IvI~Tp~~L~~~l~~~~~~~l~~~~liViDE 379 (936)
T 4a2w_A 348 DIIVVTPQILVNSFEDGTLTSLSIFTLMIFDE 379 (936)
T ss_dssp SEEEECHHHHHHHHHSSSCCCGGGCSEEEEET
T ss_pred CEEEecHHHHHHHHHcCccccccCCCEEEEEC
Confidence 799999641000 111 12 456678877644
No 148
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=55.21 E-value=13 Score=34.26 Aligned_cols=79 Identities=15% Similarity=0.073 Sum_probs=52.3
Q ss_pred CcEEEEeCchHHHHHHHHHHhccC---CceEEEecCCCCHHHHHHHHHHHhcccccccccccccCCCCCcCCCCCCceeE
Q 028124 54 LPMIVCCSSRDELDAVCSAVSNLA---DISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHM 130 (213)
Q Consensus 54 ~~~IIF~~~~~~~~~l~~~L~~~~---~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~~~~~~~~~~~~~~~~~~~~~~~~i 130 (213)
.++||.++++.-+....+.+.+.. ++.+..++|+.+...+... +..+ .+|
T Consensus 62 ~~~lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~---~~~~------------------------~~I 114 (696)
T 2ykg_A 62 GKVVFFANQIPVYEQNKSVFSKYFERHGYRVTGISGATAENVPVEQ---IVEN------------------------NDI 114 (696)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCSSSCHHH---HHHT------------------------CSE
T ss_pred CeEEEEECCHHHHHHHHHHHHHHhccCCceEEEEeCCccccccHHH---hccC------------------------CCE
Confidence 789999999998888888887652 3889999999865433222 2222 789
Q ss_pred EEEeCCCCCc-CcCC-C-CCCCCCEEEEecCC
Q 028124 131 IVVTDACLPL-LSSG-E-SAISARVLINYELP 159 (213)
Q Consensus 131 LV~Td~~~~~-~~rG-l-d~~~v~~VI~yd~P 159 (213)
+|+|+-.+-. +.++ + ++.++++||.-+..
T Consensus 115 iv~Tp~~L~~~l~~~~~~~l~~~~~vViDEaH 146 (696)
T 2ykg_A 115 IILTPQILVNNLKKGTIPSLSIFTLMIFDECH 146 (696)
T ss_dssp EEECHHHHHHHHHTTSSCCGGGCSEEEEETGG
T ss_pred EEECHHHHHHHHhcCcccccccccEEEEeCCC
Confidence 9999741100 1222 3 56778888875443
No 149
>3aay_A Putative thiosulfate sulfurtransferase; sulfurtranserase, structural genomics, PSI, structure initiative; 1.90A {Mycobacterium tuberculosis} PDB: 3aax_A 3hwi_A
Probab=54.52 E-value=22 Score=28.80 Aligned_cols=38 Identities=5% Similarity=-0.191 Sum_probs=29.8
Q ss_pred CCCCcEEEEeCch-HHHHHHHHHHhccCCceEEEecCCC
Q 028124 51 RPGLPMIVCCSSR-DELDAVCSAVSNLADISFSSLHSDL 88 (213)
Q Consensus 51 ~~~~~~IIF~~~~-~~~~~l~~~L~~~~~~~~~~lhg~~ 88 (213)
.+..++||||.+- ..+...+..|+..|+-.+..|.|++
T Consensus 75 ~~~~~vvvyc~~g~~~s~~a~~~L~~~G~~~v~~l~GG~ 113 (277)
T 3aay_A 75 ANEDTVILYGGNNNWFAAYAYWYFKLYGHEKVKLLDGGR 113 (277)
T ss_dssp CTTSEEEEECSGGGHHHHHHHHHHHHTTCCSEEEETTHH
T ss_pred CCCCeEEEECCCCCchHHHHHHHHHHcCCCcEEEecCCH
Confidence 3567899999884 3577888889888844688999985
No 150
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=54.27 E-value=83 Score=25.23 Aligned_cols=99 Identities=15% Similarity=0.118 Sum_probs=61.6
Q ss_pred EEEEecCcchHHHHHHHHHHHhhcCCCCCCcEEEEeCchHHHHHHHHHHhccC---CceEEEecCCCCHHHHHHHHHHHh
Q 028124 25 FYVAVDRLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLA---DISFSSLHSDLAETERTLILEEFR 101 (213)
Q Consensus 25 ~~~~~~~~~~K~~~L~~ll~~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~---~~~~~~lhg~~~~~~R~~~l~~Fr 101 (213)
.++..+...=|-......+-. .+.++||.|+++.-+..+++.++..+ +..+..++|+.+..++.. .+.
T Consensus 34 ~lv~~~TGsGKT~~~~~~~~~------~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~ 104 (337)
T 2z0m_A 34 VVVRAKTGSGKTAAYAIPILE------LGMKSLVVTPTRELTRQVASHIRDIGRYMDTKVAEVYGGMPYKAQIN---RVR 104 (337)
T ss_dssp EEEECCTTSSHHHHHHHHHHH------HTCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECTTSCHHHHHH---HHT
T ss_pred EEEEcCCCCcHHHHHHHHHHh------hcCCEEEEeCCHHHHHHHHHHHHHHhhhcCCcEEEEECCcchHHHHh---hcC
Confidence 555555544365544333322 25789999999999999988887531 368899999987765432 233
Q ss_pred cccccccccccccCCCCCcCCCCCCceeEEEEeCCCCCc--CcCCCCCCCCCEEEEec
Q 028124 102 HTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPL--LSSGESAISARVLINYE 157 (213)
Q Consensus 102 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~iLV~Td~~~~~--~~rGld~~~v~~VI~yd 157 (213)
. .+++|+|.-.+-. ....+++.++++||.-+
T Consensus 105 ~-------------------------~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDE 137 (337)
T 2z0m_A 105 N-------------------------ADIVVATPGRLLDLWSKGVIDLSSFEIVIIDE 137 (337)
T ss_dssp T-------------------------CSEEEECHHHHHHHHHTTSCCGGGCSEEEEES
T ss_pred C-------------------------CCEEEECHHHHHHHHHcCCcchhhCcEEEEEC
Confidence 2 6799999641100 11234566777777643
No 151
>3h11_B Caspase-8; cell death, apoptosis, caspase, alternative splicing, HOST- virus interaction, polymorphism, cytoplasm, disease mutation; 1.90A {Homo sapiens} SCOP: c.17.1.1 PDB: 2k7z_A 1i4e_B 2fun_B 2c2z_B*
Probab=53.84 E-value=28 Score=28.84 Aligned_cols=50 Identities=14% Similarity=0.172 Sum_probs=40.1
Q ss_pred CCCcEEEEeC---------------------chHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhcc
Q 028124 52 PGLPMIVCCS---------------------SRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHT 103 (213)
Q Consensus 52 ~~~~~IIF~~---------------------~~~~~~~l~~~L~~~~~~~~~~lhg~~~~~~R~~~l~~Fr~g 103 (213)
+-+-+|||+| +...++.|.+.|+..| +.+ .++.+++.++-.+.+++|...
T Consensus 16 ~rG~aLIInn~~F~~~~~~~~~~~~l~~R~Gt~~D~~~L~~~f~~LG-F~V-~~~~dlt~~em~~~l~~~~~~ 86 (271)
T 3h11_B 16 PRGYCLIINNHNFAKAREKVPKLHSIRDRNGTHLDAGALTTTFEELH-FEI-KPHDDCTVEQIYEILKIYQLM 86 (271)
T ss_dssp SCCEEEEEECCCCSHHHHTCGGGTTCCCCTTHHHHHHHHHHHHHHTT-CEE-EEEESCCHHHHHHHHHHHHHS
T ss_pred CCCEEEEEEchhcCcccccccccccCCCCCCcHHHHHHHHHHHHHCC-CEE-EEEeCCCHHHHHHHHHHHHHh
Confidence 3467888887 4467889999999998 565 566789999999999999864
No 152
>1e0c_A Rhodanese, sulfurtransferase; sulfur metabolism, thiosulfate:cyanide sulfurtransferase; 1.8A {Azotobacter vinelandii} SCOP: c.46.1.2 c.46.1.2 PDB: 1h4k_X 1h4m_X
Probab=53.31 E-value=20 Score=29.00 Aligned_cols=38 Identities=13% Similarity=0.128 Sum_probs=30.6
Q ss_pred CCCCcEEEEeCchH-HHHHHHHHHhccCCceEEEecCCC
Q 028124 51 RPGLPMIVCCSSRD-ELDAVCSAVSNLADISFSSLHSDL 88 (213)
Q Consensus 51 ~~~~~~IIF~~~~~-~~~~l~~~L~~~~~~~~~~lhg~~ 88 (213)
.+..++||||.+-. .+..++..|+..|.-.+..|.|++
T Consensus 79 ~~~~~vvvyc~~g~~~s~~a~~~L~~~G~~~v~~L~GG~ 117 (271)
T 1e0c_A 79 RPEAVYVVYDDEGGGWAGRFIWLLDVIGQQRYHYLNGGL 117 (271)
T ss_dssp CTTCEEEEECSSSSHHHHHHHHHHHHTTCCCEEEETTHH
T ss_pred CCCCeEEEEcCCCCccHHHHHHHHHHcCCCCeEEecCCH
Confidence 35678999998765 788889999998844588899985
No 153
>2dko_A Caspase-3; low barrier hydrogen bond, caspase, drug design, radiation D tetrahedral intermediate, protease; 1.06A {Homo sapiens} PDB: 1nme_A 2h5i_A 2h5j_A 2h65_A 2xyg_A* 2xyh_A 2xyp_A* 2xzd_A 2xzt_A 2y0b_A 3edq_A 1gfw_A 1re1_A* 1pau_A* 1rhk_A* 1rhm_A* 1rhq_A* 1rhr_A* 1rhu_A* 1rhj_A* ...
Probab=53.20 E-value=52 Score=24.62 Aligned_cols=49 Identities=12% Similarity=0.103 Sum_probs=38.3
Q ss_pred CCcEEEEeC--------------chHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhcc
Q 028124 53 GLPMIVCCS--------------SRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHT 103 (213)
Q Consensus 53 ~~~~IIF~~--------------~~~~~~~l~~~L~~~~~~~~~~lhg~~~~~~R~~~l~~Fr~g 103 (213)
.+.+|||.| +...++.|.+.|...| +. +.++.+++.++-.+.+++|...
T Consensus 16 rG~alIinn~~F~~~~~l~~R~Gt~~D~~~L~~~f~~Lg-F~-V~~~~dlt~~em~~~l~~~~~~ 78 (146)
T 2dko_A 16 MGLCIIINNKNFHKSTGMTSRSGTDVDAANLRETFRNLK-YE-VRNKNDLTREEIVELMRDVSKE 78 (146)
T ss_dssp EEEEEEEECCCCCGGGTCCCCTTHHHHHHHHHHHHHHTT-CE-EEEEESCCHHHHHHHHHHHHHS
T ss_pred ceEEEEEeccccCCCCCcccCCCCHHHHHHHHHHHHHCC-CE-EEEeeCCCHHHHHHHHHHHHHh
Confidence 356777766 4457789999999998 56 4566789999999999999874
No 154
>2wlr_A Putative thiosulfate sulfurtransferase YNJE; rhodanese domains; HET: EPE; 1.45A {Escherichia coli} PDB: 2wlx_A* 3ipo_A* 3ipp_A
Probab=51.80 E-value=21 Score=31.20 Aligned_cols=51 Identities=14% Similarity=0.033 Sum_probs=37.4
Q ss_pred HHHHHHHHHhhcCCCCCCcEEEEeCchHHHHHHHHHHhccCCceEEEecCCCC
Q 028124 37 ETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLA 89 (213)
Q Consensus 37 ~~L~~ll~~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~lhg~~~ 89 (213)
+.|.+.+... + -.+.+++|+||.+-.++...+..|...|.-.+..+.|+++
T Consensus 189 ~~l~~~~~~~-g-i~~~~~ivvyC~~G~~a~~~~~~L~~~G~~~v~~l~Gg~~ 239 (423)
T 2wlr_A 189 EQLKAMLAKH-G-IRHDTTVILYGRDVYAAARVAQIMLYAGVKDVRLLDGGWQ 239 (423)
T ss_dssp HHHHHHHHHT-T-CCTTSEEEEECSSHHHHHHHHHHHHHHTCSCEEEETTTHH
T ss_pred HHHHHHHHHc-C-CCCCCeEEEECCCchHHHHHHHHHHHcCCCCeEEECCCHH
Confidence 3444455431 1 2356889999999999999999999888436889999863
No 155
>1uar_A Rhodanese; sulfurtransferase, riken structural genomics/PROT initiative, RSGI, structural genomics, transferase; 1.70A {Thermus thermophilus} SCOP: c.46.1.2 c.46.1.2
Probab=51.14 E-value=18 Score=29.39 Aligned_cols=39 Identities=0% Similarity=-0.120 Sum_probs=30.9
Q ss_pred CCCCcEEEEeCchH-HHHHHHHHHhccCCceEEEecCCCC
Q 028124 51 RPGLPMIVCCSSRD-ELDAVCSAVSNLADISFSSLHSDLA 89 (213)
Q Consensus 51 ~~~~~~IIF~~~~~-~~~~l~~~L~~~~~~~~~~lhg~~~ 89 (213)
.+..++|+||++-. .+...+..|+..|+-.+..|.|++.
T Consensus 77 ~~~~~ivvyc~~g~~~s~~a~~~L~~~G~~~v~~l~GG~~ 116 (285)
T 1uar_A 77 SNDTTVVLYGDKNNWWAAYAFWFFKYNGHKDVRLMNGGRQ 116 (285)
T ss_dssp CTTCEEEEECHHHHHHHHHHHHHHHHTTCSCEEEETTHHH
T ss_pred CCCCeEEEECCCCCccHHHHHHHHHHcCCCCeEEecCCHH
Confidence 45688999998866 6788888999888446888999863
No 156
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=50.74 E-value=51 Score=32.57 Aligned_cols=44 Identities=14% Similarity=0.069 Sum_probs=35.5
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhc----cCCceEEEecCCCCHHHHHHH
Q 028124 52 PGLPMIVCCSSRDELDAVCSAVSN----LADISFSSLHSDLAETERTLI 96 (213)
Q Consensus 52 ~~~~~IIF~~~~~~~~~l~~~L~~----~~~~~~~~lhg~~~~~~R~~~ 96 (213)
.+.+++|.++|..-|...++.+.. .| +++..+.|+++..+|...
T Consensus 119 ~G~qv~VvTPTreLA~Qdae~m~~l~~~lG-Lsv~~i~Gg~~~~~r~~a 166 (997)
T 2ipc_A 119 TGKGVHVVTVNDYLARRDAEWMGPVYRGLG-LSVGVIQHASTPAERRKA 166 (997)
T ss_dssp TCSCCEEEESSHHHHHHHHHHHHHHHHTTT-CCEEECCTTCCHHHHHHH
T ss_pred hCCCEEEEeCCHHHHHHHHHHHHHHHHhcC-CeEEEEeCCCCHHHHHHH
Confidence 457899999999988887777654 36 899999999998776654
No 157
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=49.84 E-value=16 Score=27.73 Aligned_cols=40 Identities=10% Similarity=-0.054 Sum_probs=26.2
Q ss_pred CCCcEEEEeCchHHHHH-HHHHHhcc--CCceEEEecCCCCHH
Q 028124 52 PGLPMIVCCSSRDELDA-VCSAVSNL--ADISFSSLHSDLAET 91 (213)
Q Consensus 52 ~~~~~IIF~~~~~~~~~-l~~~L~~~--~~~~~~~lhg~~~~~ 91 (213)
...++||.|+++.-++. +.+.+... ..+.+..++|+.+..
T Consensus 81 ~~~~~lil~p~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~ 123 (216)
T 3b6e_A 81 EPGKVIVLVNKVLLVEQLFRKEFQPFLKKWYRVIGLSGDTQLK 123 (216)
T ss_dssp CCCCEEEEESSHHHHHHHHHHTHHHHHTTTSCEEECCC---CC
T ss_pred CCCcEEEEECHHHHHHHHHHHHHHHHhccCceEEEEeCCcccc
Confidence 35799999999988777 55555443 126888899876433
No 158
>3h11_A CAsp8 and FADD-like apoptosis regulator; cell death, apoptosis, caspase, alternative splicing, HOST- virus interaction, polymorphism, cytoplasm, disease mutation; 1.90A {Homo sapiens} PDB: 3h13_A
Probab=49.74 E-value=13 Score=31.01 Aligned_cols=50 Identities=14% Similarity=0.113 Sum_probs=43.0
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhcc
Q 028124 52 PGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHT 103 (213)
Q Consensus 52 ~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~lhg~~~~~~R~~~l~~Fr~g 103 (213)
+-+-+|||+|+...++.|.+.|...| +.+ .++.+++.++-.+.+++|...
T Consensus 42 ~rG~~LIinn~~~D~~~L~~~f~~Lg-F~V-~~~~dlt~~em~~~l~~~~~~ 91 (272)
T 3h11_A 42 PLGICLIIDCIGNETELLRDTFTSLG-YEV-QKFLHLSMHGISQILGQFACM 91 (272)
T ss_dssp SSEEEEEEESSCCCCSHHHHHHHHHT-EEE-EEEESCBHHHHHHHHHHHHTC
T ss_pred cceEEEEECCchHHHHHHHHHHHHCC-CEE-EEeeCCCHHHHHHHHHHHHhc
Confidence 45789999999999999999999998 564 566789999999999999863
No 159
>3e4c_A Caspase-1; zymogen, inflammasome, ICE, IL-1B, innate immunity, apoptosis, hydrolase, protease protease; 2.05A {Homo sapiens}
Probab=48.99 E-value=35 Score=28.81 Aligned_cols=47 Identities=21% Similarity=0.405 Sum_probs=39.9
Q ss_pred CcEEEEeCc-----------hHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhc
Q 028124 54 LPMIVCCSS-----------RDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRH 102 (213)
Q Consensus 54 ~~~IIF~~~-----------~~~~~~l~~~L~~~~~~~~~~lhg~~~~~~R~~~l~~Fr~ 102 (213)
.-+|||+|. ...++.|.+.|+..| +.+ .++.+++.++-.+.+++|..
T Consensus 61 r~aLII~N~~f~~l~~R~G~~~Da~~L~~~f~~LG-F~V-~~~~dlt~~em~~~l~~f~~ 118 (302)
T 3e4c_A 61 RLALIICNEEFDSIPRRTGAEVDITGMTMLLQNLG-YSV-DVKKNLTASDMTTELEAFAH 118 (302)
T ss_dssp CEEEEEECCSCSSSCCCTTHHHHHHHHHHHHHHTT-CEE-EEEESCCHHHHHHHHHHHHT
T ss_pred cEEEEEECcCCCCCCCCCCcHHHHHHHHHHHHHCC-CEE-EEeeCCCHHHHHHHHHHHHh
Confidence 459999997 568899999999998 565 56678999999999999965
No 160
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=48.93 E-value=1.5e+02 Score=27.58 Aligned_cols=73 Identities=12% Similarity=0.148 Sum_probs=51.4
Q ss_pred EEEEEecCcchHHHHHHHHHHHhhcCCCCCCcEEEEeCchHHHHHHHHHHhcc-CCceEEEec-----------------
Q 028124 24 HFYVAVDRLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNL-ADISFSSLH----------------- 85 (213)
Q Consensus 24 ~~~~~~~~~~~K~~~L~~ll~~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~-~~~~~~~lh----------------- 85 (213)
+.+.-+.... |.-++..++... ..++||.+++...|..++..|+.. ++-.+..+-
T Consensus 31 ~~l~g~tgs~-kt~~~a~~~~~~------~~~~lvv~~~~~~A~ql~~el~~~~~~~~V~~fps~yd~~~pe~~~~~~d~ 103 (664)
T 1c4o_A 31 VTLLGATGTG-KTVTMAKVIEAL------GRPALVLAPNKILAAQLAAEFRELFPENAVEYFISYYDYYQPEAYVPGKDL 103 (664)
T ss_dssp EEEEECTTSC-HHHHHHHHHHHH------TCCEEEEESSHHHHHHHHHHHHHHCTTSEEEECCCGGGTSCCCEEEGGGTE
T ss_pred EEEEcCCCcH-HHHHHHHHHHHh------CCCEEEEecCHHHHHHHHHHHHHHCCCCeEEEcCchhhccCcccccchhhh
Confidence 4445555555 888888888762 358999999999999999999876 432343332
Q ss_pred ---CCC--C---HHHHHHHHHHHhcc
Q 028124 86 ---SDL--A---ETERTLILEEFRHT 103 (213)
Q Consensus 86 ---g~~--~---~~~R~~~l~~Fr~g 103 (213)
.+. + ...|..++..+..+
T Consensus 104 ~~~~~~~~~~~i~~~R~~~l~~L~~~ 129 (664)
T 1c4o_A 104 YIEKDASINPEIERLRHSTTRSLLTR 129 (664)
T ss_dssp EECCCCSCCHHHHHHHHHHHHHHHHC
T ss_pred hhhhhcccCHHHHHHHHHHHHHHHhC
Confidence 232 2 45788888888775
No 161
>2eg4_A Probable thiosulfate sulfurtransferase; structural genomics, NPPSFA, national Pro protein structural and functional analyses; 1.70A {Thermus thermophilus} PDB: 2eg3_A
Probab=48.56 E-value=39 Score=26.54 Aligned_cols=45 Identities=13% Similarity=0.160 Sum_probs=33.4
Q ss_pred HHHHHHHHhhcCCCCCCcEEEEeCchH-HHHHHHHHHhccCCceEEEecCC
Q 028124 38 TLVELLHLVVAGRRPGLPMIVCCSSRD-ELDAVCSAVSNLADISFSSLHSD 87 (213)
Q Consensus 38 ~L~~ll~~~~~~~~~~~~~IIF~~~~~-~~~~l~~~L~~~~~~~~~~lhg~ 87 (213)
.+.+.+..+ + ...++||||++-. .+..++..|+ .|.-.+..+.|+
T Consensus 50 ~~~~~~~~l-~---~~~~ivvyc~~g~~~s~~a~~~L~-~G~~~v~~l~GG 95 (230)
T 2eg4_A 50 GLTELFQTL-G---LRSPVVLYDEGLTSRLCRTAFFLG-LGGLEVQLWTEG 95 (230)
T ss_dssp HHHHHHHHT-T---CCSSEEEECSSSCHHHHHHHHHHH-HTTCCEEEECSS
T ss_pred HHHHHHHhc-C---CCCEEEEEcCCCCccHHHHHHHHH-cCCceEEEeCCC
Confidence 344555542 2 2689999999877 8888999999 984458889988
No 162
>1rhs_A Sulfur-substituted rhodanese; transferase, sulfurtransferase; 1.36A {Bos taurus} SCOP: c.46.1.2 c.46.1.2 PDB: 1boh_A 1boi_A 1orb_A 2ora_A 1dp2_A* 1rhd_A
Probab=47.06 E-value=24 Score=29.08 Aligned_cols=39 Identities=10% Similarity=0.042 Sum_probs=32.0
Q ss_pred CCCCcEEEEeCchHHHHHHHHHHhccCCceEEEecCCCC
Q 028124 51 RPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLA 89 (213)
Q Consensus 51 ~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~lhg~~~ 89 (213)
.+.+++|+||.+-.++...+..|...|.-.+..+.|++.
T Consensus 238 ~~~~~ivv~C~sG~rs~~a~~~L~~~G~~~v~~~~GG~~ 276 (296)
T 1rhs_A 238 DLTKPLIATCRKGVTACHIALAAYLCGKPDVAIYDGSWF 276 (296)
T ss_dssp CTTSCEEEECSSSSTHHHHHHHHHHTTCCCCEEESSHHH
T ss_pred CCCCCEEEECCcHHHHHHHHHHHHHcCCCCceeeCCcHH
Confidence 456899999999888888899998888435888999863
No 163
>3sir_A Caspase; hydrolase; 2.68A {Drosophila melanogaster} PDB: 3sip_A
Probab=46.38 E-value=46 Score=27.29 Aligned_cols=39 Identities=8% Similarity=0.065 Sum_probs=32.5
Q ss_pred hHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhcc
Q 028124 63 RDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHT 103 (213)
Q Consensus 63 ~~~~~~l~~~L~~~~~~~~~~lhg~~~~~~R~~~l~~Fr~g 103 (213)
...++.|.+.|+..| +.+ .++.+++.++-.+.+++|...
T Consensus 43 ~~D~~~L~~~f~~LG-F~V-~~~~dlt~~em~~~l~~~~~~ 81 (259)
T 3sir_A 43 NVDCENLTRVLKQLD-FEV-TVYKDCRYKDILRTIEYSASQ 81 (259)
T ss_dssp CCHHHHHHHHHHHTT-CEE-EEEEECSHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHCC-CEE-EEEeCCCHHHHHHHHHHHHHh
Confidence 357889999999998 564 566789999999999999864
No 164
>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}
Probab=46.01 E-value=1.1e+02 Score=24.91 Aligned_cols=42 Identities=7% Similarity=0.177 Sum_probs=33.9
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhccCCceEEEecCCCCHHHHH
Q 028124 52 PGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERT 94 (213)
Q Consensus 52 ~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~lhg~~~~~~R~ 94 (213)
.+.++++.-.+.+.++.+++.+...+ .++..+..|++..+..
T Consensus 30 ~Ga~Vv~~~~~~~~~~~~~~~i~~~g-~~~~~~~~Dvt~~~~v 71 (254)
T 4fn4_A 30 NDSIVVAVELLEDRLNQIVQELRGMG-KEVLGVKADVSKKKDV 71 (254)
T ss_dssp TTCEEEEEESCHHHHHHHHHHHHHTT-CCEEEEECCTTSHHHH
T ss_pred cCCEEEEEECCHHHHHHHHHHHHhcC-CcEEEEEccCCCHHHH
Confidence 46778888778888999999998887 5899999998766553
No 165
>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A
Probab=45.54 E-value=73 Score=22.06 Aligned_cols=74 Identities=7% Similarity=0.012 Sum_probs=44.6
Q ss_pred ceEEEEEecCcchHHHHHHHHHHHhhcCCCCCCcEEEEeCchHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHh
Q 028124 22 PRHFYVAVDRLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFR 101 (213)
Q Consensus 22 i~~~~~~~~~~~~K~~~L~~ll~~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~lhg~~~~~~R~~~l~~Fr 101 (213)
-....+.++++..-...|..+|+.. ..-.++.+.+..+.+..+.+.. .. ..++.+.-.|+......+++.++
T Consensus 19 ~~~~ilivdd~~~~~~~l~~~L~~~-----g~~~v~~~~~~~~~~~~~~~~~--~~-~dlvi~D~~l~~~~g~~~~~~l~ 90 (146)
T 4dad_A 19 GMINILVASEDASRLAHLARLVGDA-----GRYRVTRTVGRAAQIVQRTDGL--DA-FDILMIDGAALDTAELAAIEKLS 90 (146)
T ss_dssp GGCEEEEECSCHHHHHHHHHHHHHH-----CSCEEEEECCCHHHHTTCHHHH--TT-CSEEEEECTTCCHHHHHHHHHHH
T ss_pred CCCeEEEEeCCHHHHHHHHHHHhhC-----CCeEEEEeCCHHHHHHHHHhcC--CC-CCEEEEeCCCCCccHHHHHHHHH
Confidence 3445666777665667777787761 1145555544433333332211 32 57778887788888888888887
Q ss_pred cc
Q 028124 102 HT 103 (213)
Q Consensus 102 ~g 103 (213)
..
T Consensus 91 ~~ 92 (146)
T 4dad_A 91 RL 92 (146)
T ss_dssp HH
T ss_pred Hh
Confidence 63
No 166
>2h54_A Caspase-1; allosteric site, dimer interface, hydrolase; HET: PHQ; 1.80A {Homo sapiens} PDB: 1rwm_A* 1rwk_A* 1rwo_A* 1rwp_A* 1rwv_A* 1rww_A* 1rwn_A* 2h48_A* 2h4w_A* 1rwx_A* 2hbq_A* 2hby_A* 1ibc_A 3d6m_A* 2h4y_A* 2h51_A* 3d6f_A* 3d6h_A* 2hbz_A* 2hbr_A* ...
Probab=44.50 E-value=60 Score=25.13 Aligned_cols=48 Identities=21% Similarity=0.389 Sum_probs=39.3
Q ss_pred CCcEEEEeCc-----------hHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhc
Q 028124 53 GLPMIVCCSS-----------RDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRH 102 (213)
Q Consensus 53 ~~~~IIF~~~-----------~~~~~~l~~~L~~~~~~~~~~lhg~~~~~~R~~~l~~Fr~ 102 (213)
.+.+||+.|. ...++.|.+.|+..| +.+ .++.+++..+-.+.+++|..
T Consensus 43 ~g~ALIInn~~f~~~~~R~G~~~Da~~L~~~f~~Lg-F~V-~~~~dlt~~em~~~l~~f~~ 101 (178)
T 2h54_A 43 TRLALIICNEEFDSIPRRTGAEVDITGMTMLLQNLG-YSV-DVKKNLTASDMTTELEAFAH 101 (178)
T ss_dssp CCEEEEEECCCCSSSCCCTTHHHHHHHHHHHHHHTT-CEE-EEEESCCHHHHHHHHHHHHT
T ss_pred CCEEEEEehhhcCCCccCCCCHHHHHHHHHHHHHCC-CEE-EEecCCCHHHHHHHHHHHHh
Confidence 3568999885 377889999999998 675 46678999999999999965
No 167
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=44.46 E-value=79 Score=22.12 Aligned_cols=70 Identities=13% Similarity=0.231 Sum_probs=41.9
Q ss_pred EEEEecCcchHHHHHHHHHHHhhcCCCCCCcEEEEeCchHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhcc
Q 028124 25 FYVAVDRLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHT 103 (213)
Q Consensus 25 ~~~~~~~~~~K~~~L~~ll~~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~lhg~~~~~~R~~~l~~Fr~g 103 (213)
..+.++++..-.+.|..+|+. ......+..+.+...+ ...+.... ..++.+.-.|+......+++.++..
T Consensus 22 ~iLivdd~~~~~~~l~~~L~~-----~~~~~~v~~~~~~~~a---l~~l~~~~-~dlii~D~~l~~~~g~~~~~~l~~~ 91 (150)
T 4e7p_A 22 KVLVAEDQSMLRDAMCQLLTL-----QPDVESVLQAKNGQEA---IQLLEKES-VDIAILDVEMPVKTGLEVLEWIRSE 91 (150)
T ss_dssp EEEEECSCHHHHHHHHHHHHT-----STTEEEEEEESSHHHH---HHHHTTSC-CSEEEECSSCSSSCHHHHHHHHHHT
T ss_pred EEEEEcCCHHHHHHHHHHHHh-----CCCcEEEEEECCHHHH---HHHhhccC-CCEEEEeCCCCCCcHHHHHHHHHHh
Confidence 455666666456666777765 1122344455554433 34455544 5788888777777777778877763
No 168
>3sxu_A DNA polymerase III subunit CHI; DNA replication, CHI binds to SSB and PSI, transferase; HET: DNA; 1.85A {Escherichia coli} SCOP: c.128.1.1 PDB: 1em8_A*
Probab=44.43 E-value=46 Score=25.03 Aligned_cols=40 Identities=10% Similarity=0.102 Sum_probs=32.8
Q ss_pred hHHHHHHHHHHHhhcCCCCCCcEEEEeCchHHHHHHHHHHhcc
Q 028124 34 FKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNL 76 (213)
Q Consensus 34 ~K~~~L~~ll~~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~ 76 (213)
.+....++|+++... .+.+++|.|.+...++.|-+.|=..
T Consensus 23 ~~~~~aCrL~~ka~~---~G~rv~V~~~d~~~a~~LD~~LW~~ 62 (150)
T 3sxu_A 23 AVEQLVCEIAAERWR---SGKRVLIACEDEKQAYRLDEALWAR 62 (150)
T ss_dssp HHHHHHHHHHHHHHH---TTCCEEEECSSHHHHHHHHHHTTTS
T ss_pred HHHHHHHHHHHHHHH---cCCeEEEECCCHHHHHHHHHHHhCC
Confidence 378888888876443 6899999999999999999998544
No 169
>2ouc_A Dual specificity protein phosphatase 10; rhodanese fold, hydrolase; 2.20A {Homo sapiens}
Probab=43.42 E-value=13 Score=26.56 Aligned_cols=35 Identities=20% Similarity=0.195 Sum_probs=27.9
Q ss_pred CCcEEEEeCchHH---------HHHHHHHHhccCCceEEEecCCC
Q 028124 53 GLPMIVCCSSRDE---------LDAVCSAVSNLADISFSSLHSDL 88 (213)
Q Consensus 53 ~~~~IIF~~~~~~---------~~~l~~~L~~~~~~~~~~lhg~~ 88 (213)
..++||||++-.. +.+++..|...|. .+..+.|++
T Consensus 83 ~~~ivvyc~~g~~~~~~~~~~~~~~~~~~L~~~G~-~v~~l~GG~ 126 (142)
T 2ouc_A 83 SKEIIVYDENTNEPSRVMPSQPLHIVLESLKREGK-EPLVLKGGL 126 (142)
T ss_dssp HSCEEEECSSCCCGGGCCTTSHHHHHHHHHHHTTC-CCEEETTHH
T ss_pred CCcEEEEECCCCchhhcCcccHHHHHHHHHHHcCC-cEEEEccCH
Confidence 4789999997655 3567788888885 889999985
No 170
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=42.79 E-value=51 Score=28.56 Aligned_cols=58 Identities=3% Similarity=0.018 Sum_probs=43.0
Q ss_pred EEEEecCcchHHHHHHHHHHHhhcCCCCCCcEEEEeCchHHHHHHHHHHhccCCce-EEEecCCCC
Q 028124 25 FYVAVDRLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADIS-FSSLHSDLA 89 (213)
Q Consensus 25 ~~~~~~~~~~K~~~L~~ll~~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~-~~~lhg~~~ 89 (213)
.++..+...=|-......+... +.++||.|+++.-+...++.+...+ +. +..+||+.+
T Consensus 111 ~ll~~~TGsGKT~~~l~~i~~~------~~~~Lvl~P~~~L~~Q~~~~~~~~~-~~~v~~~~g~~~ 169 (472)
T 2fwr_A 111 GCIVLPTGSGKTHVAMAAINEL------STPTLIVVPTLALAEQWKERLGIFG-EEYVGEFSGRIK 169 (472)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH------CSCEEEEESSHHHHHHHHHHGGGGC-GGGEEEBSSSCB
T ss_pred EEEEeCCCCCHHHHHHHHHHHc------CCCEEEEECCHHHHHHHHHHHHhCC-CcceEEECCCcC
Confidence 4444444433766665555552 4799999999999999999998886 78 999998864
No 171
>1qtn_A Caspase-8; apoptosis, dithiane-DIOL, caspase, cysteine-protease, hydrol hydrolase inhibitor complex; 1.20A {Homo sapiens} SCOP: c.17.1.1 PDB: 3kjn_A* 3kjq_A* 2y1l_A 2c2z_A 1qdu_A* 1f9e_A*
Probab=42.70 E-value=73 Score=24.26 Aligned_cols=39 Identities=15% Similarity=0.189 Sum_probs=32.3
Q ss_pred hHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhcc
Q 028124 63 RDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHT 103 (213)
Q Consensus 63 ~~~~~~l~~~L~~~~~~~~~~lhg~~~~~~R~~~l~~Fr~g 103 (213)
...++.|.+.|...| +.+ .++.+++.++-.+.+++|...
T Consensus 54 ~~D~~~L~~~f~~Lg-F~V-~~~~dlt~~em~~~l~~~~~~ 92 (164)
T 1qtn_A 54 HLDAGALTTTFEELH-FEI-KPHDDCTVEQIYEILKIYQLM 92 (164)
T ss_dssp HHHHHHHHHHHHHTT-CEE-EEEESCCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHCC-CEE-EEecCCCHHHHHHHHHHHHHh
Confidence 567888999999998 565 567789999999999999664
No 172
>1okg_A Possible 3-mercaptopyruvate sulfurtransferase; rhodanese, prolyl isomerase, catalytic triad, serine protease, leishmania pyruvate; HET: CSR; 2.10A {Leishmania major} SCOP: c.46.1.2 c.46.1.2 d.26.1.3
Probab=42.60 E-value=36 Score=29.39 Aligned_cols=38 Identities=8% Similarity=0.027 Sum_probs=28.9
Q ss_pred CCCCcEEEEe-Cch-HHHHHHHHHHhccCCceEEEecCCCC
Q 028124 51 RPGLPMIVCC-SSR-DELDAVCSAVSNLADISFSSLHSDLA 89 (213)
Q Consensus 51 ~~~~~~IIF~-~~~-~~~~~l~~~L~~~~~~~~~~lhg~~~ 89 (213)
.+..++|||| .+- ..+...+..|+..|+ .+..|.|++.
T Consensus 93 ~~d~~VVvYc~~~G~rsa~ra~~~L~~~G~-~V~~L~GG~~ 132 (373)
T 1okg_A 93 AGELPVLCYDDECGAMGGCRLWWMLNSLGA-DAYVINGGFQ 132 (373)
T ss_dssp SSSSCEEEECSSTTTTTHHHHHHHHHHHTC-CEEEETTTTH
T ss_pred CCCCeEEEEeCCCCchHHHHHHHHHHHcCC-eEEEeCCCHH
Confidence 4568999999 443 333477888988896 9999999973
No 173
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=42.50 E-value=8.5 Score=35.52 Aligned_cols=79 Identities=14% Similarity=0.052 Sum_probs=49.0
Q ss_pred CCcEEEEeCchHHHHHH-HHHHhccCC--ceEEEecCCCCHHHHHHHHHHHhcccccccccccccCCCCCcCCCCCCcee
Q 028124 53 GLPMIVCCSSRDELDAV-CSAVSNLAD--ISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSH 129 (213)
Q Consensus 53 ~~~~IIF~~~~~~~~~l-~~~L~~~~~--~~~~~lhg~~~~~~R~~~l~~Fr~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (213)
..++||.++++.-+... ++.|+.... +.+..++|+.+..++...+ .. ..+
T Consensus 56 ~~~vlvl~P~~~L~~Q~~~~~l~~~~~~~~~v~~~~g~~~~~~~~~~~---~~------------------------~~~ 108 (699)
T 4gl2_A 56 PGKVIVLVNKVLLVEQLFRKEFQPFLKKWYRVIGLSGDTQLKISFPEV---VK------------------------SCD 108 (699)
T ss_dssp CCCBCCEESCSHHHHHHHHHTHHHHHTTTSCEEEEC----CCCCHHHH---HH------------------------SCS
T ss_pred CCeEEEEECCHHHHHHHHHHHHHHHcCcCceEEEEeCCcchhhHHHhh---hc------------------------CCC
Confidence 37899999999988888 887776522 7899999998655443222 22 278
Q ss_pred EEEEeCCCCCc-C-------cCCCCCCCCCEEEEecC
Q 028124 130 MIVVTDACLPL-L-------SSGESAISARVLINYEL 158 (213)
Q Consensus 130 iLV~Td~~~~~-~-------~rGld~~~v~~VI~yd~ 158 (213)
|+|+|.-.+-. + ...+.+..+++||--..
T Consensus 109 Ilv~Tp~~L~~~l~~~~~~~~~~~~~~~~~lvViDEa 145 (699)
T 4gl2_A 109 IIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDEC 145 (699)
T ss_dssp EEEEEHHHHHHHTC--------CCCGGGCSEEEEESG
T ss_pred EEEECHHHHHHHHhccccccccceecccCcEEEEECc
Confidence 99999753110 1 12346677888876443
No 174
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=42.26 E-value=89 Score=22.12 Aligned_cols=73 Identities=14% Similarity=0.151 Sum_probs=42.8
Q ss_pred ceEEEEEecCcchHHHHHHHHHHHhhcCCCCCCcEEEEeCchHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHh
Q 028124 22 PRHFYVAVDRLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFR 101 (213)
Q Consensus 22 i~~~~~~~~~~~~K~~~L~~ll~~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~lhg~~~~~~R~~~l~~Fr 101 (213)
.....+.++++..-...|..+|+. .+-.++..+.+...+-......... ..++.+.-.|+......++++++
T Consensus 35 ~~~~Ilivdd~~~~~~~l~~~L~~------~g~~v~~~~~~~~~al~~l~~~~~~--~dliilD~~l~~~~g~~~~~~lr 106 (157)
T 3hzh_A 35 IPFNVLIVDDSVFTVKQLTQIFTS------EGFNIIDTAADGEEAVIKYKNHYPN--IDIVTLXITMPKMDGITCLSNIM 106 (157)
T ss_dssp EECEEEEECSCHHHHHHHHHHHHH------TTCEEEEEESSHHHHHHHHHHHGGG--CCEEEECSSCSSSCHHHHHHHHH
T ss_pred CceEEEEEeCCHHHHHHHHHHHHh------CCCeEEEEECCHHHHHHHHHhcCCC--CCEEEEeccCCCccHHHHHHHHH
Confidence 344566677776566777777776 2344542555555444333322112 46777777776666677777776
Q ss_pred c
Q 028124 102 H 102 (213)
Q Consensus 102 ~ 102 (213)
.
T Consensus 107 ~ 107 (157)
T 3hzh_A 107 E 107 (157)
T ss_dssp H
T ss_pred h
Confidence 6
No 175
>3olh_A MST, 3-mercaptopyruvate sulfurtransferase; structural genomics, structural genomics consortium, SGC, RH fold; 2.50A {Homo sapiens}
Probab=42.20 E-value=19 Score=30.04 Aligned_cols=51 Identities=12% Similarity=0.087 Sum_probs=36.3
Q ss_pred HHHHHHHHHhhcCCCCCCcEEEEeCchHHHHHHHHHHhccCCceEEEecCCCC
Q 028124 37 ETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLA 89 (213)
Q Consensus 37 ~~L~~ll~~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~lhg~~~ 89 (213)
+.|.+++... + ..+.+++|+||.+-.++...+..|...|.-.+..+.|++.
T Consensus 240 ~~l~~~~~~~-~-~~~~~~iv~yC~sG~rs~~a~~~L~~~G~~~v~~~~Gg~~ 290 (302)
T 3olh_A 240 EEIRHLFQEK-K-VDLSKPLVATCGSGVTACHVALGAYLCGKPDVPIYDGSWV 290 (302)
T ss_dssp HHHHHHHHHT-T-CCTTSCEEEECSSSSTTHHHHHHHHTTTCCCCCEESSHHH
T ss_pred HHHHHHHHhc-C-CCCCCCEEEECCChHHHHHHHHHHHHcCCCCeeEeCCcHH
Confidence 3445555431 1 2456899999999888888888898888436778888764
No 176
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=41.74 E-value=1.6e+02 Score=26.36 Aligned_cols=107 Identities=9% Similarity=0.074 Sum_probs=60.9
Q ss_pred EEEEEecCcchHHHH-HHHHHHHhhcCC---CCCCcEEEEeCchHHHHHHHHHHhcc-------CCceEEEecCCCCHHH
Q 028124 24 HFYVAVDRLQFKMET-LVELLHLVVAGR---RPGLPMIVCCSSRDELDAVCSAVSNL-------ADISFSSLHSDLAETE 92 (213)
Q Consensus 24 ~~~~~~~~~~~K~~~-L~~ll~~~~~~~---~~~~~~IIF~~~~~~~~~l~~~L~~~-------~~~~~~~lhg~~~~~~ 92 (213)
..++..+...=|-.. +.-++..+.... ....++||.++++.-+..+++.+... ..+.+..++|+.+...
T Consensus 62 dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lvl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~ 141 (579)
T 3sqw_A 62 DVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRA 141 (579)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHH
T ss_pred eEEEEcCCCcHHHHHHHHHHHHHHHhccccccCCCeEEEEcchHHHHHHHHHHHHHHHhhcccccceEEEEEECCccHHH
Confidence 344445444335543 333333322211 12458999999999999888888753 2256778888765443
Q ss_pred HHHHHHHHhcccccccccccccCCCCCcCCCCCCceeEEEEeCCCCCc-CcC--CCCCCCCCEEEEe
Q 028124 93 RTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPL-LSS--GESAISARVLINY 156 (213)
Q Consensus 93 R~~~l~~Fr~g~~~~~~~~~~~~~~~~~~~~~~~~~~iLV~Td~~~~~-~~r--Gld~~~v~~VI~y 156 (213)
.++.+..+ ..+|+|+|.-.+-. +.+ ...+..+++||.-
T Consensus 142 ---~~~~l~~~-----------------------~~~IlV~Tp~~l~~~l~~~~~~~~~~~~~lViD 182 (579)
T 3sqw_A 142 ---AMNKMNKL-----------------------RPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLD 182 (579)
T ss_dssp ---HHHHHHHH-----------------------CCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEE
T ss_pred ---HHHHHhcC-----------------------CCCEEEECHHHHHHHHHhccccccccCCEEEEE
Confidence 34444443 27899999742100 111 2356677777653
No 177
>1rhs_A Sulfur-substituted rhodanese; transferase, sulfurtransferase; 1.36A {Bos taurus} SCOP: c.46.1.2 c.46.1.2 PDB: 1boh_A 1boi_A 1orb_A 2ora_A 1dp2_A* 1rhd_A
Probab=41.57 E-value=30 Score=28.41 Aligned_cols=38 Identities=11% Similarity=0.031 Sum_probs=29.4
Q ss_pred CCCCcEEEEeCc--hH-HHHHHHHHHhccCCceEEEecCCC
Q 028124 51 RPGLPMIVCCSS--RD-ELDAVCSAVSNLADISFSSLHSDL 88 (213)
Q Consensus 51 ~~~~~~IIF~~~--~~-~~~~l~~~L~~~~~~~~~~lhg~~ 88 (213)
.+..++||||.+ -. .+..++..|+..|+-.+..|.|++
T Consensus 90 ~~~~~vVvyc~~~~g~~~a~~a~~~L~~~G~~~V~~L~GG~ 130 (296)
T 1rhs_A 90 SNDTHVVVYDGDDLGSFYAPRVWWMFRVFGHRTVSVLNGGF 130 (296)
T ss_dssp CTTCEEEEECCCSSSCSSHHHHHHHHHHTTCCCEEEETTHH
T ss_pred CCCCeEEEEcCCCCCcchHHHHHHHHHHcCCCcEEEcCCCH
Confidence 356789999987 33 477888889888844688999985
No 178
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=40.42 E-value=1.6e+02 Score=26.04 Aligned_cols=78 Identities=10% Similarity=0.105 Sum_probs=49.5
Q ss_pred CCcEEEEeCchHHHHHHHHHHhcc-------CCceEEEecCCCCHHHHHHHHHHHhcccccccccccccCCCCCcCCCCC
Q 028124 53 GLPMIVCCSSRDELDAVCSAVSNL-------ADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDE 125 (213)
Q Consensus 53 ~~~~IIF~~~~~~~~~l~~~L~~~-------~~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~~~~~~~~~~~~~~~~~~~~ 125 (213)
..++||.++++.-+..+++.++.. ..+.+..+.|+.+... .++.+..+
T Consensus 146 ~~~~lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~---~~~~~~~~---------------------- 200 (563)
T 3i5x_A 146 MVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRA---AMNKMNKL---------------------- 200 (563)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHH---HHHHHHHH----------------------
T ss_pred CeeEEEEcCcHHHHHHHHHHHHHHHhhccccCceeEEEEECCcCHHH---HHHHHhcC----------------------
Confidence 358999999999999998888752 1245777888865444 33444443
Q ss_pred CceeEEEEeCCCCC-cCcC--CCCCCCCCEEEEe
Q 028124 126 HKSHMIVVTDACLP-LLSS--GESAISARVLINY 156 (213)
Q Consensus 126 ~~~~iLV~Td~~~~-~~~r--Gld~~~v~~VI~y 156 (213)
..+|+|+|.-.+- .+.+ ...+..+++||.-
T Consensus 201 -~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lViD 233 (563)
T 3i5x_A 201 -RPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLD 233 (563)
T ss_dssp -CCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEE
T ss_pred -CCCEEEECcHHHHHHHHhccccccccceEEEEe
Confidence 2789999975110 0111 2345667777653
No 179
>3zyw_A Glutaredoxin-3; metal binding protein; 1.84A {Homo sapiens}
Probab=39.39 E-value=79 Score=22.00 Aligned_cols=43 Identities=16% Similarity=0.128 Sum_probs=29.8
Q ss_pred CCcEEEEe------CchHHHHHHHHHHhccCCceEEEecCCCCHHHHHHH
Q 028124 53 GLPMIVCC------SSRDELDAVCSAVSNLADISFSSLHSDLAETERTLI 96 (213)
Q Consensus 53 ~~~~IIF~------~~~~~~~~l~~~L~~~~~~~~~~lhg~~~~~~R~~~ 96 (213)
..+++||. +++..|....+.|...+ +....+.=+.++..|..+
T Consensus 15 ~~~Vvlf~kg~~~~~~Cp~C~~ak~~L~~~g-i~y~~~di~~d~~~~~~l 63 (111)
T 3zyw_A 15 AAPCMLFMKGTPQEPRCGFSKQMVEILHKHN-IQFSSFDIFSDEEVRQGL 63 (111)
T ss_dssp SSSEEEEESBCSSSBSSHHHHHHHHHHHHTT-CCCEEEEGGGCHHHHHHH
T ss_pred cCCEEEEEecCCCCCcchhHHHHHHHHHHcC-CCeEEEECcCCHHHHHHH
Confidence 47999998 57888999999998886 665555433344444433
No 180
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=38.68 E-value=84 Score=27.44 Aligned_cols=100 Identities=6% Similarity=0.004 Sum_probs=59.8
Q ss_pred EEEecCcchHHHHHHHHHHHhhcCCCCCCcEEEEeCchHHHHHHHHHHhccC---CceEEEecCCCCHHHHHHHHHHHhc
Q 028124 26 YVAVDRLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLA---DISFSSLHSDLAETERTLILEEFRH 102 (213)
Q Consensus 26 ~~~~~~~~~K~~~L~~ll~~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~---~~~~~~lhg~~~~~~R~~~l~~Fr~ 102 (213)
++..+...=|-.....++..... ....++||.|+++.-+....+.+...+ ...+..++|+.+..++ ..
T Consensus 132 ll~~~tGsGKT~~~~~~~~~~~~--~~~~~vlvl~P~~~L~~Q~~~~~~~~~~~~~~~v~~~~~~~~~~~~-------~~ 202 (510)
T 2oca_A 132 ILNLPTSAGRSLIQALLARYYLE--NYEGKILIIVPTTALTTQMADDFVDYRLFSHAMIKKIGGGASKDDK-------YK 202 (510)
T ss_dssp EEECCSTTTHHHHHHHHHHHHHH--HCSSEEEEEESSHHHHHHHHHHHHHTTSSCGGGEEECGGGCCTTGG-------GC
T ss_pred EEEeCCCCCHHHHHHHHHHHHHh--CCCCeEEEEECcHHHHHHHHHHHHHhhcCCccceEEEecCCccccc-------cc
Confidence 33333333355554444433221 123499999999999988888887652 2468888988765543 22
Q ss_pred ccccccccccccCCCCCcCCCCCCceeEEEEeCCCCCcCcCC--CCCCCCCEEEEecCCC
Q 028124 103 TAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSG--ESAISARVLINYELPT 160 (213)
Q Consensus 103 g~~~~~~~~~~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~rG--ld~~~v~~VI~yd~P~ 160 (213)
+ ..+|+|+|.-. +.+. ..+.+.++||.-+...
T Consensus 203 ~-----------------------~~~I~i~T~~~---l~~~~~~~~~~~~liIiDE~H~ 236 (510)
T 2oca_A 203 N-----------------------DAPVVVGTWQT---VVKQPKEWFSQFGMMMNDECHL 236 (510)
T ss_dssp T-----------------------TCSEEEEEHHH---HTTSCGGGGGGEEEEEEETGGG
T ss_pred c-----------------------CCcEEEEeHHH---HhhchhhhhhcCCEEEEECCcC
Confidence 2 37899999752 2222 3456677777655443
No 181
>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*
Probab=38.67 E-value=24 Score=31.57 Aligned_cols=38 Identities=8% Similarity=-0.034 Sum_probs=33.2
Q ss_pred CCCCcEEEEeCchHHHHHHHHHHhccCCceEEEecCCCC
Q 028124 51 RPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLA 89 (213)
Q Consensus 51 ~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~lhg~~~ 89 (213)
.+.+++++||.+-..+...+..|+..|+ .+..+.|++.
T Consensus 522 ~~~~~iv~~c~~g~rs~~a~~~l~~~G~-~v~~l~gG~~ 559 (565)
T 3ntd_A 522 PKDKEIIIFSQVGLRGNVAYRQLVNNGY-RARNLIGGYR 559 (565)
T ss_dssp CTTSEEEEECSSSHHHHHHHHHHHHTTC-CEEEETTHHH
T ss_pred CCcCeEEEEeCCchHHHHHHHHHHHcCC-CEEEEcChHH
Confidence 3567899999999999999999999985 9999999863
No 182
>2vzf_A NADH-dependent FMN reductase; oxidoreductase; 2.50A {Edta-degrading bacterium BNC1} PDB: 2vzh_A* 2vzj_A*
Probab=38.65 E-value=1.1e+02 Score=23.30 Aligned_cols=27 Identities=11% Similarity=0.165 Sum_probs=20.8
Q ss_pred eeEEEEeCCCCCcCcCCCCCCCCCEEEEecCCCChHHHHHhhcc
Q 028124 128 SHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTT 171 (213)
Q Consensus 128 ~~iLV~Td~~~~~~~rGld~~~v~~VI~yd~P~~~~~yi~R~GR 171 (213)
-.++++|+. .|+.+|.....|+.|+.+
T Consensus 71 D~ii~~sP~-----------------y~~~~p~~lK~~ld~l~~ 97 (197)
T 2vzf_A 71 DGLIVATPI-----------------YKASYTGLLKAFLDILPQ 97 (197)
T ss_dssp SEEEEEEEC-----------------BTTBCCHHHHHHHTTSCT
T ss_pred CEEEEEeCc-----------------cCCCCCHHHHHHHHhccc
Confidence 458888887 456778888999998865
No 183
>1t3k_A Arath CDC25, dual-specificity tyrosine phosphatase; cell cycle, phosphorylation, plant, hydrolase; NMR {Arabidopsis thaliana} SCOP: c.46.1.1
Probab=38.63 E-value=42 Score=24.80 Aligned_cols=38 Identities=5% Similarity=-0.008 Sum_probs=24.3
Q ss_pred CCCcEEEEeC-chHHHHHHHHHH--------hccCCceEEEecCCCC
Q 028124 52 PGLPMIVCCS-SRDELDAVCSAV--------SNLADISFSSLHSDLA 89 (213)
Q Consensus 52 ~~~~~IIF~~-~~~~~~~l~~~L--------~~~~~~~~~~lhg~~~ 89 (213)
+.+++||||+ +-......+..| +..|.-.+..+.|++.
T Consensus 84 ~~~~iVvyC~~~G~rs~~aa~~L~~~l~~~L~~~G~~~V~~L~GG~~ 130 (152)
T 1t3k_A 84 DKDTLVFHSALSQVRGPTCARRLVNYLDEKKEDTGIKNIMILERGFN 130 (152)
T ss_dssp SCCEEEESSSCCSSSHHHHHHHHHHHHHHSSSCCCSSEEEEESSTTH
T ss_pred CCCEEEEEcCCCCcchHHHHHHHHHHHHHHHHhcCCCcEEEEcCCHH
Confidence 5678999998 544333333333 3467447889999974
No 184
>3ipz_A Monothiol glutaredoxin-S14, chloroplastic; electron transport, PL redox-active center, transit peptide, transport, oxidoreduc; 2.40A {Arabidopsis thaliana} PDB: 2lku_A
Probab=38.45 E-value=86 Score=21.55 Aligned_cols=43 Identities=14% Similarity=0.126 Sum_probs=29.4
Q ss_pred CCcEEEEeC------chHHHHHHHHHHhccCCceEEEecCCCCHHHHHHH
Q 028124 53 GLPMIVCCS------SRDELDAVCSAVSNLADISFSSLHSDLAETERTLI 96 (213)
Q Consensus 53 ~~~~IIF~~------~~~~~~~l~~~L~~~~~~~~~~lhg~~~~~~R~~~ 96 (213)
..+++||.. ++..|....+.|...+ +....+.=+..+..+..+
T Consensus 17 ~~~Vvvy~k~t~~~p~Cp~C~~ak~~L~~~g-i~~~~~dI~~~~~~~~~l 65 (109)
T 3ipz_A 17 SEKVVLFMKGTRDFPMCGFSNTVVQILKNLN-VPFEDVNILENEMLRQGL 65 (109)
T ss_dssp SSSEEEEESBCSSSBSSHHHHHHHHHHHHTT-CCCEEEEGGGCHHHHHHH
T ss_pred cCCEEEEEecCCCCCCChhHHHHHHHHHHcC-CCcEEEECCCCHHHHHHH
Confidence 478999988 4889999999998886 565554433334444333
No 185
>2j6p_A SB(V)-AS(V) reductase; arsenate reductase, antimonate reductase, CDC25 phosphatase, rhodanese, C-MYC epitope, oxidoreductase; HET: EPE; 2.15A {Leishmania major}
Probab=38.34 E-value=51 Score=24.22 Aligned_cols=36 Identities=17% Similarity=0.129 Sum_probs=21.8
Q ss_pred CcEEEE-e-CchHHH----HHHHHHHhccCC--ceEEEecCCCC
Q 028124 54 LPMIVC-C-SSRDEL----DAVCSAVSNLAD--ISFSSLHSDLA 89 (213)
Q Consensus 54 ~~~IIF-~-~~~~~~----~~l~~~L~~~~~--~~~~~lhg~~~ 89 (213)
.+.||| | .+-..+ .+++..|...|. ..+..|.|++.
T Consensus 68 ~~~vV~yC~~sg~rs~~aa~~~~~~L~~~G~~~~~v~~L~GG~~ 111 (152)
T 2j6p_A 68 KELAVFHCAQSLVRAPKGANRFALAQKKLGYVLPAVYVLRGGWE 111 (152)
T ss_dssp CCEEEEECSSSSSHHHHHHHHHHHHHHHHTCCCSEEEEETTHHH
T ss_pred CCEEEEEcCCCCCccHHHHHHHHHHHHHcCCCCCCEEEEcCcHH
Confidence 445555 9 343333 245577777772 36888999863
No 186
>3olh_A MST, 3-mercaptopyruvate sulfurtransferase; structural genomics, structural genomics consortium, SGC, RH fold; 2.50A {Homo sapiens}
Probab=38.33 E-value=35 Score=28.29 Aligned_cols=50 Identities=14% Similarity=0.050 Sum_probs=34.6
Q ss_pred HHHHHHHHHhhcCCCCCCcEEEEeCc---hHHHHHHHHHHhccCCceEEEecCCC
Q 028124 37 ETLVELLHLVVAGRRPGLPMIVCCSS---RDELDAVCSAVSNLADISFSSLHSDL 88 (213)
Q Consensus 37 ~~L~~ll~~~~~~~~~~~~~IIF~~~---~~~~~~l~~~L~~~~~~~~~~lhg~~ 88 (213)
+.+.+.+..+- -.+..++||||.+ ...+.+++..|+..|+-.+..|.|++
T Consensus 93 ~~~~~~~~~lg--i~~~~~VVvyc~~~~g~~~a~ra~~~L~~~G~~~V~~L~GG~ 145 (302)
T 3olh_A 93 EHFAEYAGRLG--VGAATHVVIYDASDQGLYSAPRVWWMFRAFGHHAVSLLDGGL 145 (302)
T ss_dssp HHHHHHHHHTT--CCSSCEEEEECCCTTSCSSHHHHHHHHHHTTCCCEEEETTHH
T ss_pred HHHHHHHHHcC--CCCCCEEEEEeCCCCCcchHHHHHHHHHHcCCCcEEECCCCH
Confidence 34555555531 1456789999964 23478888999998854588899985
No 187
>1m72_A Caspase-1; caspase, cysteine protease, hydrolase-hydrolase inhibitor CO; 2.30A {Spodoptera frugiperda} SCOP: c.17.1.1 PDB: 3sip_B
Probab=37.42 E-value=1.2e+02 Score=24.91 Aligned_cols=49 Identities=10% Similarity=0.151 Sum_probs=40.0
Q ss_pred CCcEEEEeCc-------------hHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhcc
Q 028124 53 GLPMIVCCSS-------------RDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHT 103 (213)
Q Consensus 53 ~~~~IIF~~~-------------~~~~~~l~~~L~~~~~~~~~~lhg~~~~~~R~~~l~~Fr~g 103 (213)
.+-+|||.|. ...++.|++.|+..| +.+ .++.+++.++-.+.+++|...
T Consensus 32 rg~aLIInn~~f~~~~l~~R~g~~~Da~~L~~~f~~LG-F~V-~~~~dlt~~em~~~l~~~~~~ 93 (272)
T 1m72_A 32 RGMAIIFNHEHFDIHSLKSRTGTNVDSDNLSKVLKTLG-FKV-TVFPNLKSEEINKFIQQTAEM 93 (272)
T ss_dssp EEEEEEEECCCCSSTTCCCCTTHHHHHHHHHHHHHHTT-CEE-EEEESCCHHHHHHHHHHHHTS
T ss_pred CCEEEEEechhcCCCCcccCCCCHHHHHHHHHHHHHCC-CEE-EEecCcCHHHHHHHHHHHHHh
Confidence 3568888874 677899999999998 565 566789999999999999864
No 188
>3hzu_A Thiosulfate sulfurtransferase SSEA; niaid, ssgcid, infectious disease, transferase structural genomics; 2.10A {Mycobacterium tuberculosis} PDB: 3p3a_A
Probab=37.29 E-value=33 Score=28.71 Aligned_cols=38 Identities=11% Similarity=0.224 Sum_probs=31.6
Q ss_pred CCCCcEEEEeCchHHHHHHHHHHhc-cCCceEEEecCCC
Q 028124 51 RPGLPMIVCCSSRDELDAVCSAVSN-LADISFSSLHSDL 88 (213)
Q Consensus 51 ~~~~~~IIF~~~~~~~~~l~~~L~~-~~~~~~~~lhg~~ 88 (213)
.+.+++|+||.+-.++...+..|.. .|.-.+..+.|++
T Consensus 257 ~~~~~ivvyC~sG~rs~~a~~~L~~~~G~~~v~~~~GG~ 295 (318)
T 3hzu_A 257 NPDDQTVVYCRIGERSSHTWFVLTHLLGKADVRNYDGSW 295 (318)
T ss_dssp CTTCCCEEECSSSHHHHHHHHHHHHTSCCSSCEECTTHH
T ss_pred CCCCcEEEEcCChHHHHHHHHHHHHHcCCCCeeEeCCcH
Confidence 4678999999999999999999986 7733588888885
No 189
>3od5_A Caspase-6; caspase domain, apoptotic protease, hydrolase-hydrolase INHI complex; 1.60A {Homo sapiens} SCOP: c.17.1.0 PDB: 3k7e_A 3s70_A 3v6m_A 3v6l_A 3nr2_A 4fxo_A 2wdp_A 3nkf_A 3s8e_A 4ejf_A 3qnw_A* 3p4u_A* 3p45_B 3qnw_B* 3p4u_B*
Probab=36.10 E-value=76 Score=26.24 Aligned_cols=49 Identities=16% Similarity=0.164 Sum_probs=39.0
Q ss_pred CCcEEEEeCc--------------hHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhcc
Q 028124 53 GLPMIVCCSS--------------RDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHT 103 (213)
Q Consensus 53 ~~~~IIF~~~--------------~~~~~~l~~~L~~~~~~~~~~lhg~~~~~~R~~~l~~Fr~g 103 (213)
-+-+|||+|. ...++.|.+.|+..| +.+ .++.+++.++-.+.+++|...
T Consensus 21 rg~aLIInn~~F~~~~~l~~R~Gt~~D~~~L~~~f~~LG-F~V-~~~~dlt~~em~~~l~~~~~~ 83 (278)
T 3od5_A 21 RGIALIFNHERFFWHLTLPERRGTCADRDNLTRRFSDLG-FEV-KCFNDLKAEELLLKIHEVSTV 83 (278)
T ss_dssp CCEEEEEECCCCCGGGCCCCCTTHHHHHHHHHHHHHHTT-CEE-EEEESCCHHHHHHHHHHHHHS
T ss_pred cCEEEEEeccccCCCCCCCCCCCCHHHHHHHHHHHHHCC-CEE-EEecCCCHHHHHHHHHHHHhh
Confidence 4568888885 367889999999998 565 466789999999999999664
No 190
>2j32_A Caspase-3; Pro-caspase3, thiol protease, hydrolase, hydrolase-hydrolase inhibitor complex; 1.30A {Homo sapiens} PDB: 2j30_A 3h0e_A* 2j33_A 3pd1_A 2j31_A 3pcx_A 1nms_A* 1nmq_A* 3deh_A* 3dei_A* 3dej_A* 3dek_A* 3pd0_A 3itn_A 1qx3_A
Probab=35.92 E-value=63 Score=26.22 Aligned_cols=48 Identities=13% Similarity=0.127 Sum_probs=38.1
Q ss_pred CcEEEEeCc--------------hHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhcc
Q 028124 54 LPMIVCCSS--------------RDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHT 103 (213)
Q Consensus 54 ~~~IIF~~~--------------~~~~~~l~~~L~~~~~~~~~~lhg~~~~~~R~~~l~~Fr~g 103 (213)
+-+|||.|. ...++.|++.|+..| +.+ .++.+++.++-.+.+++|...
T Consensus 17 g~aLIInn~~f~~~~~l~~r~g~~~D~~~l~~~f~~Lg-F~V-~~~~dlt~~em~~~l~~~~~~ 78 (250)
T 2j32_A 17 GLCIIINNKNFHKSTGMTSRSGTDVDAANLRETFRNLK-YEV-RNKNDLTREEIVELMRDVSKE 78 (250)
T ss_dssp EEEEEEECCCCCGGGTCCCCTTHHHHHHHHHHHHHHTT-CEE-EEEESCCHHHHHHHHHHHHTS
T ss_pred cEEEEEechhcCCCCCCcCCCCCHHHHHHHHHHHHHCC-CEE-EEEeCCCHHHHHHHHHHHHHh
Confidence 457777772 347889999999998 565 566789999999999999875
No 191
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=35.70 E-value=2.1e+02 Score=26.45 Aligned_cols=73 Identities=12% Similarity=0.129 Sum_probs=51.1
Q ss_pred EEEEEecCcchHHHHHHHHHHHhhcCCCCCCcEEEEeCchHHHHHHHHHHhcc-CCceEEEec-----------------
Q 028124 24 HFYVAVDRLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNL-ADISFSSLH----------------- 85 (213)
Q Consensus 24 ~~~~~~~~~~~K~~~L~~ll~~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~-~~~~~~~lh----------------- 85 (213)
+.+.-+.... |.-++..+++.. ..++||.+++...|..++..|+.. ++-.+..+-
T Consensus 35 ~~l~g~~gs~-k~~~~a~~~~~~------~~~~lvv~~~~~~A~~l~~el~~~~~~~~v~~fps~yd~~~pe~~~~~~d~ 107 (661)
T 2d7d_A 35 QTLLGATGTG-KTFTVSNLIKEV------NKPTLVIAHNKTLAGQLYSEFKEFFPNNAVEYFVSYYDYYQPEAYVPQTDT 107 (661)
T ss_dssp EEEEECTTSC-HHHHHHHHHHHH------CCCEEEECSSHHHHHHHHHHHHHHCTTSEEEEECCCEEEEECCEEETTTTE
T ss_pred EEEECcCCcH-HHHHHHHHHHHh------CCCEEEEECCHHHHHHHHHHHHHHcCCCcEEEccccccccCccccCCcchh
Confidence 4445555555 888888888762 358999999999999999999876 432344332
Q ss_pred ---CCC--C---HHHHHHHHHHHhcc
Q 028124 86 ---SDL--A---ETERTLILEEFRHT 103 (213)
Q Consensus 86 ---g~~--~---~~~R~~~l~~Fr~g 103 (213)
... + ...|..++.++..+
T Consensus 108 y~~~~~~~~~~i~~~Rl~~l~~L~~~ 133 (661)
T 2d7d_A 108 FIEKDASINDEIDKLRHSATSALFER 133 (661)
T ss_dssp EECCEEEECHHHHHHHHHHHHHHHHC
T ss_pred hhhhhcccCHHHHHHHHHHHHHHHhC
Confidence 111 1 46888899998765
No 192
>1yt8_A Thiosulfate sulfurtransferase; rhodanase domains, cyanide detoxification, structural genomics, PSI, protein structure initiative; 1.90A {Pseudomonas aeruginosa} SCOP: c.46.1.2 c.46.1.2 c.46.1.2 c.46.1.2
Probab=35.30 E-value=43 Score=30.26 Aligned_cols=37 Identities=14% Similarity=0.149 Sum_probs=31.8
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhccCCceEEEecCCC
Q 028124 52 PGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDL 88 (213)
Q Consensus 52 ~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~lhg~~ 88 (213)
+..++||||++-..+...+..|+..|+-.+..|.|++
T Consensus 62 ~~~~iVvyc~~g~~s~~a~~~L~~~G~~~V~~L~GG~ 98 (539)
T 1yt8_A 62 RDTPITVYDDGEGLAPVAAQRLHDLGYSDVALLDGGL 98 (539)
T ss_dssp TTSCEEEECSSSSHHHHHHHHHHHTTCSSEEEETTHH
T ss_pred CCCeEEEEECCCChHHHHHHHHHHcCCCceEEeCCCH
Confidence 5689999999988899999999999854688898885
No 193
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}
Probab=34.95 E-value=1.1e+02 Score=21.22 Aligned_cols=72 Identities=11% Similarity=0.037 Sum_probs=43.1
Q ss_pred eEEEEEecCcchHHHHHHHHHHHhhcCCCCCCcEEEEeCchHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhc
Q 028124 23 RHFYVAVDRLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRH 102 (213)
Q Consensus 23 ~~~~~~~~~~~~K~~~L~~ll~~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~lhg~~~~~~R~~~l~~Fr~ 102 (213)
....+.++++..-.+.|..+|... .....+..+.+...+-. .+.... ..++.+.-.|+......+++.++.
T Consensus 15 ~~~iLivdd~~~~~~~l~~~L~~~-----~~~~~v~~~~~~~~a~~---~l~~~~-~dlii~d~~l~~~~g~~~~~~l~~ 85 (152)
T 3eul_A 15 KVRVVVGDDHPLFREGVVRALSLS-----GSVNVVGEADDGAAALE---LIKAHL-PDVALLDYRMPGMDGAQVAAAVRS 85 (152)
T ss_dssp CEEEEEECSSHHHHHHHHHHHHHH-----SSEEEEEEESSHHHHHH---HHHHHC-CSEEEEETTCSSSCHHHHHHHHHH
T ss_pred eEEEEEEcCCHHHHHHHHHHHhhC-----CCeEEEEEeCCHHHHHH---HHHhcC-CCEEEEeCCCCCCCHHHHHHHHHh
Confidence 345666777765677778888761 11233445666554443 333333 567777766766666777777776
Q ss_pred c
Q 028124 103 T 103 (213)
Q Consensus 103 g 103 (213)
.
T Consensus 86 ~ 86 (152)
T 3eul_A 86 Y 86 (152)
T ss_dssp T
T ss_pred c
Confidence 3
No 194
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=34.90 E-value=38 Score=30.53 Aligned_cols=75 Identities=12% Similarity=0.131 Sum_probs=51.3
Q ss_pred HHHHHHHHHHhhcCCCCCCcEEEEeCchHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhcccccccccccccC
Q 028124 36 METLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQS 115 (213)
Q Consensus 36 ~~~L~~ll~~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~~~~~~~~~~ 115 (213)
++.|...++. .+.+++|.|.+...++.|.+.|...+ +........ . .+..
T Consensus 371 ~~~L~~~~~~------~~~rVvi~a~s~~r~erL~~~L~~~~-i~~~~~~~~-~---------~~~~------------- 420 (483)
T 3hjh_A 371 LDALRKFLET------FDGPVVFSVESEGRREALGELLARIK-IAPQRIMRL-D---------EASD------------- 420 (483)
T ss_dssp THHHHHHHHH------CCSCEEEEESCSSTTTTTHHHHGGGT-CCCEECSCG-G---------GCCT-------------
T ss_pred HHHHHHHHHh------CCCeEEEEeCChHHHHHHHHHHHHcC-CCceecCch-h---------hcCC-------------
Confidence 3455555543 24699999999999999999999886 665443321 0 1122
Q ss_pred CCCCcCCCCCCceeEEEEeCCCCCcCcCCCCCCCCCEEEEe
Q 028124 116 GDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINY 156 (213)
Q Consensus 116 ~~~~~~~~~~~~~~iLV~Td~~~~~~~rGld~~~v~~VI~y 156 (213)
..+.|+.-. +..|..+|+..++|.-
T Consensus 421 ------------g~v~i~~g~----L~~GF~~p~~klaVIT 445 (483)
T 3hjh_A 421 ------------RGRYLMIGA----AEHGFVDTVRNLALIC 445 (483)
T ss_dssp ------------TCEEEEESC----CCSCEEETTTTEEEEE
T ss_pred ------------CcEEEEEcc----cccCcccCCCCEEEEE
Confidence 235556666 8999999998887773
No 195
>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*
Probab=34.62 E-value=31 Score=31.18 Aligned_cols=38 Identities=3% Similarity=0.021 Sum_probs=32.9
Q ss_pred CCCCcEEEEeCchHHHHHHHHHHhccCCceEEEecCCCC
Q 028124 51 RPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLA 89 (213)
Q Consensus 51 ~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~lhg~~~ 89 (213)
.+.+++++||.+-..+...+..|+..| +.+..+.|++.
T Consensus 539 ~~~~~iv~~C~~g~rs~~a~~~l~~~G-~~v~~l~GG~~ 576 (588)
T 3ics_A 539 PVDKDIYITCQLGMRGYVAARMLMEKG-YKVKNVDGGFK 576 (588)
T ss_dssp CSSSCEEEECSSSHHHHHHHHHHHHTT-CCEEEETTHHH
T ss_pred CCCCeEEEECCCCcHHHHHHHHHHHcC-CcEEEEcchHH
Confidence 456899999999999999999999998 57888999863
No 196
>2fp3_A Caspase NC; apoptosis, initiator caspase activation, dimerization, active site conformation, hydrolysis/apoptosis complex; 2.50A {Drosophila melanogaster}
Probab=34.18 E-value=1e+02 Score=26.02 Aligned_cols=50 Identities=4% Similarity=0.021 Sum_probs=41.4
Q ss_pred CCCcEEEEeCch------------HHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhcc
Q 028124 52 PGLPMIVCCSSR------------DELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHT 103 (213)
Q Consensus 52 ~~~~~IIF~~~~------------~~~~~l~~~L~~~~~~~~~~lhg~~~~~~R~~~l~~Fr~g 103 (213)
+.+-+|||+|.. ..++.|.+.|+..| +.+ .++.+++.++-.+.+++|...
T Consensus 60 ~rg~aLIInN~~F~~~~~~R~Gt~~D~~~L~~~f~~LG-F~V-~~~~dlt~~em~~~l~~f~~~ 121 (316)
T 2fp3_A 60 NRGVLLMVNIMDYPDQNRRRIGAEKDSKSLIHLFQELN-FTI-FPYGNVNQDQFFKLLTMVTSS 121 (316)
T ss_dssp CSEEEEEEECCCCSSTTSCCTTHHHHHHHHHHHHHHTT-EEE-EEECSCCHHHHHHHHHHHHTS
T ss_pred CCcEEEEEeCcccCCCCCCCCCcHHHHHHHHHHHHHCC-CEE-EEccCCCHHHHHHHHHHHHHH
Confidence 457889998863 67889999999998 565 567799999999999999864
No 197
>2wlr_A Putative thiosulfate sulfurtransferase YNJE; rhodanese domains; HET: EPE; 1.45A {Escherichia coli} PDB: 2wlx_A* 3ipo_A* 3ipp_A
Probab=33.96 E-value=52 Score=28.58 Aligned_cols=38 Identities=8% Similarity=0.069 Sum_probs=32.0
Q ss_pred CCCCcEEEEeCchHHHHHHHHHHhccCCceEEEecCCC
Q 028124 51 RPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDL 88 (213)
Q Consensus 51 ~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~lhg~~ 88 (213)
.+.+++|+||.+-.++...+..|...|.-.+..+.|++
T Consensus 356 ~~~~~ivvyC~sG~rs~~aa~~L~~~G~~~v~~~~GG~ 393 (423)
T 2wlr_A 356 KPEQQVSFYCGTGWRASETFMYARAMGWKNVSVYDGGW 393 (423)
T ss_dssp CTTSEEEEECSSSHHHHHHHHHHHHTTCSSEEEESSHH
T ss_pred CCCCcEEEECCcHHHHHHHHHHHHHcCCCCcceeCccH
Confidence 45689999999999999999999988843688888885
No 198
>2yan_A Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {Homo sapiens}
Probab=33.86 E-value=1.1e+02 Score=20.61 Aligned_cols=46 Identities=4% Similarity=0.012 Sum_probs=31.1
Q ss_pred CcEEEEe------CchHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHH
Q 028124 54 LPMIVCC------SSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEF 100 (213)
Q Consensus 54 ~~~IIF~------~~~~~~~~l~~~L~~~~~~~~~~lhg~~~~~~R~~~l~~F 100 (213)
.+++||. +++..|..+...|...+ +....+.=+..+..+..+.+.+
T Consensus 17 ~~vvvf~~g~~~~~~C~~C~~~~~~L~~~~-i~~~~vdi~~~~~~~~~l~~~~ 68 (105)
T 2yan_A 17 ASVMLFMKGNKQEAKCGFSKQILEILNSTG-VEYETFDILEDEEVRQGLKAYS 68 (105)
T ss_dssp SSEEEEESBCSSSBCTTHHHHHHHHHHHHT-CCCEEEEGGGCHHHHHHHHHHH
T ss_pred CCEEEEEecCCCCCCCccHHHHHHHHHHCC-CCeEEEECCCCHHHHHHHHHHH
Confidence 5799998 46778888888888876 6666555544555555444444
No 199
>3p45_A Caspase-6; protease, huntington'S disease, physio PH, competitive inhibition, hydrolase; 2.53A {Homo sapiens}
Probab=33.73 E-value=1.1e+02 Score=23.76 Aligned_cols=50 Identities=18% Similarity=0.201 Sum_probs=39.9
Q ss_pred CCCcEEEEeCch--------------HHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhcc
Q 028124 52 PGLPMIVCCSSR--------------DELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHT 103 (213)
Q Consensus 52 ~~~~~IIF~~~~--------------~~~~~l~~~L~~~~~~~~~~lhg~~~~~~R~~~l~~Fr~g 103 (213)
+-+.+|||+|.. ..++.|.+.|...| +.+ .++.+++.++-.+.+++|...
T Consensus 43 ~rG~aLIinn~~F~~~~~l~~R~Gt~~D~~~L~~~F~~LG-F~V-~~~~dlt~~em~~~l~~~~~~ 106 (179)
T 3p45_A 43 RRGIALIFNHERFFWHLTLPERRGTCADRDNLTRRFSDLG-FEV-KCFNDLKAEELLLKIHEVSTV 106 (179)
T ss_dssp BCCEEEEEECCSCCGGGCCCCCTTHHHHHHHHHHHHHHTT-CEE-EEEESCCHHHHHHHHHHHHTS
T ss_pred ccCEEEEEeCcccCCCCCCCCCCCCHHHHHHHHHHHHHCC-CEE-EEEeCCCHHHHHHHHHHHhhh
Confidence 346799998853 57889999999998 565 455689999999999999764
No 200
>1pyo_A Caspase-2; apoptosis, caspase, alpha-beta, thiol protease, hydrolase-HY inhibitor complex; 1.65A {Homo sapiens} SCOP: c.17.1.1 PDB: 3rjm_A* 2p2c_A 3r5j_A 3r6g_A 3r6l_A 3r7b_A 3r7n_A 3r7s_A
Probab=33.57 E-value=95 Score=23.69 Aligned_cols=50 Identities=16% Similarity=0.179 Sum_probs=40.5
Q ss_pred CCCCcEEEEeCch--------------HHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhc
Q 028124 51 RPGLPMIVCCSSR--------------DELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRH 102 (213)
Q Consensus 51 ~~~~~~IIF~~~~--------------~~~~~l~~~L~~~~~~~~~~lhg~~~~~~R~~~l~~Fr~ 102 (213)
.+.+.+|||.|.. ..++.|.+.|...| +.+ .++.+++.++-.+.+++|..
T Consensus 31 ~~rG~aLIinn~~F~~~~~l~~R~Gt~~D~~~L~~~f~~Lg-F~V-~~~~dlt~~em~~~l~~~~~ 94 (167)
T 1pyo_A 31 RPRGLALVLSNVHFTGEKELEFRSGGDVDHSTLVTLFKLLG-YDV-HVLCDQTAQEMQEKLQNFAQ 94 (167)
T ss_dssp SSSEEEEEEECCCCCSSSCSCCCTTHHHHHHHHHHHHHHTT-EEE-EEEESCCHHHHHHHHHHHHT
T ss_pred CCceEEEEEeCcccCCCCCCccCCCcHHHHHHHHHHHHHCC-CEE-EEeeCCCHHHHHHHHHHhhh
Confidence 3457889998752 37889999999998 565 66788999999999999987
No 201
>1yt8_A Thiosulfate sulfurtransferase; rhodanase domains, cyanide detoxification, structural genomics, PSI, protein structure initiative; 1.90A {Pseudomonas aeruginosa} SCOP: c.46.1.2 c.46.1.2 c.46.1.2 c.46.1.2
Probab=33.33 E-value=37 Score=30.67 Aligned_cols=36 Identities=8% Similarity=0.113 Sum_probs=31.5
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhccCCceEEEecC-CC
Q 028124 52 PGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHS-DL 88 (213)
Q Consensus 52 ~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~lhg-~~ 88 (213)
+.+++|+||.+-..+...+..|+..| +.+..+.| ++
T Consensus 321 ~~~~ivv~c~~g~rs~~aa~~L~~~G-~~v~~l~G~G~ 357 (539)
T 1yt8_A 321 RGARLVLVDDDGVRANMSASWLAQMG-WQVAVLDGLSE 357 (539)
T ss_dssp BTCEEEEECSSSSHHHHHHHHHHHTT-CEEEEECSCCG
T ss_pred CCCeEEEEeCCCCcHHHHHHHHHHcC-CeEEEecCCCh
Confidence 46899999999888889999999998 58989999 86
No 202
>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0
Probab=32.95 E-value=1.8e+02 Score=22.98 Aligned_cols=50 Identities=8% Similarity=0.179 Sum_probs=35.1
Q ss_pred CCcEEEEeCchHHHHHHHHHHhccCCceEEEecCCCCHH--HHHHHHHHHhc
Q 028124 53 GLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAET--ERTLILEEFRH 102 (213)
Q Consensus 53 ~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~lhg~~~~~--~R~~~l~~Fr~ 102 (213)
+.++++.+.+....+.+.+.|...+.-.+..+..|++.. ....+.+.+..
T Consensus 36 G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~~v~~~~~~~~~ 87 (311)
T 3o26_A 36 GIMVVLTCRDVTKGHEAVEKLKNSNHENVVFHQLDVTDPIATMSSLADFIKT 87 (311)
T ss_dssp TCEEEEEESCHHHHHHHHHHHHTTTCCSEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCEEEEEeCCHHHHHHHHHHHHhcCCCceEEEEccCCCcHHHHHHHHHHHHH
Confidence 568999999988888888888776434677788888763 33444444443
No 203
>4ehd_A Caspase-3; caspase, apoptosis, allosteric inhibition; 1.58A {Homo sapiens} PDB: 4ehk_A 4ehf_A 4ehn_A 1cp3_A 4ehh_A 4eha_A 4ehl_A 1i3o_A
Probab=32.65 E-value=81 Score=26.12 Aligned_cols=49 Identities=12% Similarity=0.110 Sum_probs=38.8
Q ss_pred CCcEEEEeC--------------chHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhcc
Q 028124 53 GLPMIVCCS--------------SRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHT 103 (213)
Q Consensus 53 ~~~~IIF~~--------------~~~~~~~l~~~L~~~~~~~~~~lhg~~~~~~R~~~l~~Fr~g 103 (213)
.+-+|||+| +...++.|.+.|+..| +.+ .++.+++.++-.+.+++|...
T Consensus 44 rg~aLIInN~~F~~~~~l~~R~Gt~~D~~~L~~~f~~LG-F~V-~~~~dlt~~em~~~l~~f~~~ 106 (277)
T 4ehd_A 44 MGLCIIINNKNFHKSTGMTSRSGTDVDAANLRETFRNLK-YEV-RNKNDLTREEIVELMRDVSKE 106 (277)
T ss_dssp EEEEEEEECCCCCGGGTCCCCTTHHHHHHHHHHHHHHTT-CEE-EEEESCCHHHHHHHHHHHHTS
T ss_pred CCEEEEEEchhcCCcCCCCCCCCCHHHHHHHHHHHHHCC-CEE-EEecCCCHHHHHHHHHHHHhh
Confidence 366788865 3347889999999998 564 567789999999999999874
No 204
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=31.21 E-value=1.3e+02 Score=23.29 Aligned_cols=120 Identities=13% Similarity=0.107 Sum_probs=65.0
Q ss_pred CcEEEEeCchHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhcccccccccccccCCCCCcCCCCCCceeEEEE
Q 028124 54 LPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVV 133 (213)
Q Consensus 54 ~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~~~~~~~~~~~~~~~~~~~~~~~~iLV~ 133 (213)
.+.++.+++..-.+.+.+.....+ ..+..+.+++ ++-....+++ .. ..+++|+
T Consensus 5 ~~I~~iapy~~l~~~~~~i~~e~~-~~i~i~~~~l--~~~v~~a~~~-~~-----------------------~~dVIIS 57 (196)
T 2q5c_A 5 LKIALISQNENLLNLFPKLALEKN-FIPITKTASL--TRASKIAFGL-QD-----------------------EVDAIIS 57 (196)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHT-CEEEEEECCH--HHHHHHHHHH-TT-----------------------TCSEEEE
T ss_pred CcEEEEEccHHHHHHHHHHHhhhC-CceEEEECCH--HHHHHHHHHh-cC-----------------------CCeEEEE
Confidence 467777777776665555444444 4666677775 3444445555 32 3778887
Q ss_pred eCCCCCcCcCCCCCCCCCEEEEecCCCChHHHHHhhccccCCCCeEEEEEeCchhHHHHHHHHHhcccccccC
Q 028124 134 TDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAADGSVINIVVGGEVVTLRSMEESLGLIVAEVP 206 (213)
Q Consensus 134 Td~~~~~~~rGld~~~v~~VI~yd~P~~~~~yi~R~GR~~~~~g~~i~~~~~~e~~~~~~le~~l~~~~~~~~ 206 (213)
--.-..++.+-+++|=+ ++|-+..++++-+-++....+.+-.+-.++-...+..+...++..+....
T Consensus 58 RGgta~~lr~~~~iPVV------~I~~s~~Dil~al~~a~~~~~kIavvg~~~~~~~~~~~~~ll~~~i~~~~ 124 (196)
T 2q5c_A 58 RGATSDYIKKSVSIPSI------SIKVTRFDTMRAVYNAKRFGNELALIAYKHSIVDKHEIEAMLGVKIKEFL 124 (196)
T ss_dssp EHHHHHHHHTTCSSCEE------EECCCHHHHHHHHHHHGGGCSEEEEEEESSCSSCHHHHHHHHTCEEEEEE
T ss_pred CChHHHHHHHhCCCCEE------EEcCCHhHHHHHHHHHHhhCCcEEEEeCcchhhHHHHHHHHhCCceEEEE
Confidence 44211113333444422 45777888877665542222222222224444556778888887766443
No 205
>3utn_X Thiosulfate sulfurtransferase TUM1; rhodanese-like domain; 1.90A {Saccharomyces cerevisiae}
Probab=31.10 E-value=92 Score=26.42 Aligned_cols=40 Identities=13% Similarity=0.111 Sum_probs=30.1
Q ss_pred CCCCCcEEEEeCchHHHHHHHHHHhccCCceEEEecCCCC
Q 028124 50 RRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLA 89 (213)
Q Consensus 50 ~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~lhg~~~ 89 (213)
-.+.+++|+||.+--+|-.++-.|...|.-.+..+.|..+
T Consensus 272 id~~k~vI~yCgsGvtA~~~~laL~~lG~~~v~lYdGSWs 311 (327)
T 3utn_X 272 LDPSKPTICSCGTGVSGVIIKTALELAGVPNVRLYDGSWT 311 (327)
T ss_dssp CCTTSCEEEECSSSHHHHHHHHHHHHTTCCSEEEESSHHH
T ss_pred CCCCCCEEEECChHHHHHHHHHHHHHcCCCCceeCCCcHH
Confidence 4567899999999988888777777777335777778653
No 206
>1okg_A Possible 3-mercaptopyruvate sulfurtransferase; rhodanese, prolyl isomerase, catalytic triad, serine protease, leishmania pyruvate; HET: CSR; 2.10A {Leishmania major} SCOP: c.46.1.2 c.46.1.2 d.26.1.3
Probab=30.84 E-value=34 Score=29.54 Aligned_cols=38 Identities=13% Similarity=-0.030 Sum_probs=31.4
Q ss_pred CCcEEEEeCchHHHHHHHHHHhccCCceEEEecCCCCH
Q 028124 53 GLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAE 90 (213)
Q Consensus 53 ~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~lhg~~~~ 90 (213)
.+++|+||.+-.++...+..|...|.-.+..+.|++..
T Consensus 246 d~~ivvyC~sG~rs~~a~~~L~~~G~~~v~~~~GG~~~ 283 (373)
T 1okg_A 246 LSSFVFSCGSGVTACINIALVHHLGLGHPYLYCGSWSE 283 (373)
T ss_dssp CTTSEEECSSSSTHHHHHHHHHHTTSCCCEECSSHHHH
T ss_pred CCCEEEECCchHHHHHHHHHHHHcCCCCeeEeCChHHH
Confidence 67899999998888888889988883358888898754
No 207
>3tp9_A Beta-lactamase and rhodanese domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.70A {Alicyclobacillus acidocaldarius subsp}
Probab=29.88 E-value=40 Score=29.70 Aligned_cols=39 Identities=8% Similarity=0.032 Sum_probs=32.7
Q ss_pred CCCCcEEEEeCchHHHHHHHHHHhccCCceEEEecCCCC
Q 028124 51 RPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLA 89 (213)
Q Consensus 51 ~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~lhg~~~ 89 (213)
.+.+++|+||.+-.++...+..|+..|.-.+..+.|++.
T Consensus 425 ~~~~~vvv~C~~G~ra~~a~~~L~~~G~~~v~~~~Gg~~ 463 (474)
T 3tp9_A 425 PRDGSVCVYCRTGGRSAIAASLLRAHGVGDVRNMVGGYE 463 (474)
T ss_dssp CSSSCEEEECSSSHHHHHHHHHHHHHTCSSEEEETTHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEecChHH
Confidence 456899999999999999999999888435888898863
No 208
>2ql9_A Caspase-7; cysteine protease, apoptosis, thiol protease, zymogen, hydro hydrolase inhibitor complex; HET: CIT; 2.14A {Homo sapiens} PDB: 2ql7_A* 2ql5_A* 2qlb_A* 2qlf_A 2qlj_A* 3edr_A 3ibc_A 3ibf_A 1i51_A
Probab=29.39 E-value=1.9e+02 Score=22.16 Aligned_cols=49 Identities=10% Similarity=0.093 Sum_probs=38.3
Q ss_pred CCcEEEEeCc--------------hHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhcc
Q 028124 53 GLPMIVCCSS--------------RDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHT 103 (213)
Q Consensus 53 ~~~~IIF~~~--------------~~~~~~l~~~L~~~~~~~~~~lhg~~~~~~R~~~l~~Fr~g 103 (213)
-+.+|||.|. ...++.|...|...| +.+ .++.+++.++-.+.+++|...
T Consensus 44 rG~aLIInn~~F~~~~~l~~R~Gt~~D~~~L~~~F~~Lg-F~V-~v~~dlt~~em~~~l~~~s~~ 106 (173)
T 2ql9_A 44 LGKCIIINNKNFDKVTGMGVRNGTDKDAEALFKCFRSLG-FDV-IVYNDCSCAKMQDLLKKASEE 106 (173)
T ss_dssp EEEEEEEECCCCCGGGCCCCCTTHHHHHHHHHHHHHHHT-EEE-EEEESCCHHHHHHHHHHHHTS
T ss_pred ceEEEEEeccccCCCCCCCCCCCcHHHHHHHHHHHHHCC-CEE-EEEeCCCHHHHHHHHHHHHHh
Confidence 3568888773 356788999999888 565 566789999999999999775
No 209
>2nn3_C Caspase-1; cysteine protease, hydrolase; 3.00A {Spodoptera frugiperda}
Probab=29.33 E-value=1.3e+02 Score=25.44 Aligned_cols=50 Identities=10% Similarity=0.141 Sum_probs=41.0
Q ss_pred CCCcEEEEeCc-------------hHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhcc
Q 028124 52 PGLPMIVCCSS-------------RDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHT 103 (213)
Q Consensus 52 ~~~~~IIF~~~-------------~~~~~~l~~~L~~~~~~~~~~lhg~~~~~~R~~~l~~Fr~g 103 (213)
+.+-+|||.|. ...++.|.+.|+..| +.+ .++.+++.++-.+.+++|...
T Consensus 59 ~rg~aLIInN~~F~~~~l~~R~Gt~~Da~~L~~~f~~LG-F~V-~~~~dlt~~em~~~l~~f~~~ 121 (310)
T 2nn3_C 59 HRGMAIIFNHEHFDIHSLKSRTGTNVDSDNLSKVLKTLG-FKV-TVFPNLKSEEINKFIQQTAEM 121 (310)
T ss_dssp BCCEEEEEECCCCSSTTCCCCTTHHHHHHHHHHHHHHTT-CEE-EEEESCCHHHHHHHHHHHHSS
T ss_pred CcCEEEEEechhcCCCCcccCCCCHHHHHHHHHHHHHCC-CEE-EEecCCCHHHHHHHHHHHHHh
Confidence 34678999885 667889999999998 565 566789999999999999864
No 210
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=29.10 E-value=1.6e+02 Score=23.03 Aligned_cols=57 Identities=4% Similarity=-0.003 Sum_probs=41.6
Q ss_pred EEEEecCcchHHHHHHHHHHHhhcCCCCCCcEEEEeCchHHHHHHHHHHhccCCce-EEEecCCC
Q 028124 25 FYVAVDRLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADIS-FSSLHSDL 88 (213)
Q Consensus 25 ~~~~~~~~~~K~~~L~~ll~~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~-~~~lhg~~ 88 (213)
..+..+...=|-.....++.. ...+++|+|+++.-+..+.+.+...+ +. +..++|+.
T Consensus 111 ~ll~~~tG~GKT~~a~~~~~~------~~~~~liv~P~~~L~~q~~~~~~~~~-~~~v~~~~g~~ 168 (237)
T 2fz4_A 111 GCIVLPTGSGKTHVAMAAINE------LSTPTLIVVPTLALAEQWKERLGIFG-EEYVGEFSGRI 168 (237)
T ss_dssp EEEEESSSTTHHHHHHHHHHH------SCSCEEEEESSHHHHHHHHHHHGGGC-GGGEEEESSSC
T ss_pred EEEEeCCCCCHHHHHHHHHHH------cCCCEEEEeCCHHHHHHHHHHHHhCC-CCeEEEEeCCC
Confidence 445555544477666666655 15789999999999999988888776 67 88888875
No 211
>2qv0_A Protein MRKE; structural genomics, transcription, PSI-2, protein structure initiative; 2.40A {Klebsiella pneumoniae}
Probab=28.73 E-value=1.3e+02 Score=20.52 Aligned_cols=69 Identities=9% Similarity=0.108 Sum_probs=39.1
Q ss_pred EEEecCcchHHHHHHHHHHHhhcCCCCCCcEEEEeCchHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhcc
Q 028124 26 YVAVDRLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHT 103 (213)
Q Consensus 26 ~~~~~~~~~K~~~L~~ll~~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~lhg~~~~~~R~~~l~~Fr~g 103 (213)
.+.++++..-...+..+|... .+-.++-.+.+... ....+.... ..++.+.-.++......+++.++..
T Consensus 12 iLivdd~~~~~~~l~~~L~~~-----~~~~~v~~~~~~~~---al~~l~~~~-~dlvi~d~~l~~~~g~~~~~~l~~~ 80 (143)
T 2qv0_A 12 VIIVEDEFLAQQELSWLINTH-----SQMEIVGSFDDGLD---VLKFLQHNK-VDAIFLDINIPSLDGVLLAQNISQF 80 (143)
T ss_dssp EEEECSCHHHHHHHHHHHHHH-----SCCEEEEEESCHHH---HHHHHHHCC-CSEEEECSSCSSSCHHHHHHHHTTS
T ss_pred EEEEcCCHHHHHHHHHHHHhC-----CCceEEEEeCCHHH---HHHHHHhCC-CCEEEEecCCCCCCHHHHHHHHHcc
Confidence 455666655667777777651 12233323444333 333444443 5777777777666667777777763
No 212
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=28.49 E-value=78 Score=29.36 Aligned_cols=66 Identities=6% Similarity=0.154 Sum_probs=43.9
Q ss_pred eEEEEEecCcchHHHHH-HHHHHHhhcCCCCCCcEEEEeCchHHHHHHHHHHhc---cCCceEEEecCCCCHHH
Q 028124 23 RHFYVAVDRLQFKMETL-VELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSN---LADISFSSLHSDLAETE 92 (213)
Q Consensus 23 ~~~~~~~~~~~~K~~~L-~~ll~~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~---~~~~~~~~lhg~~~~~~ 92 (213)
+..++..+...=|-... ..+++.+.. .+.++++.++++.-+..+++.++. .| +.+..++|+.+...
T Consensus 40 ~~~lv~apTGsGKT~~~~l~il~~~~~---~~~~~l~i~P~raLa~q~~~~~~~l~~~g-~~v~~~~G~~~~~~ 109 (720)
T 2zj8_A 40 KNALISIPTASGKTLIAEIAMVHRILT---QGGKAVYIVPLKALAEEKFQEFQDWEKIG-LRVAMATGDYDSKD 109 (720)
T ss_dssp CEEEEECCGGGCHHHHHHHHHHHHHHH---HCSEEEEECSSGGGHHHHHHHTGGGGGGT-CCEEEECSCSSCCC
T ss_pred CcEEEEcCCccHHHHHHHHHHHHHHHh---CCCEEEEEcCcHHHHHHHHHHHHHHHhcC-CEEEEecCCCCccc
Confidence 34555555544355433 344444321 257999999999999999999863 24 78999999876544
No 213
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=28.22 E-value=74 Score=29.43 Aligned_cols=100 Identities=12% Similarity=0.111 Sum_probs=60.4
Q ss_pred EEEEecCcchHHHHH-HHHHHHhhcCCCCCCcEEEEeCchHHHHHHHHHHhcc---CCceEEEecCCCCHHHHHHHHHHH
Q 028124 25 FYVAVDRLQFKMETL-VELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNL---ADISFSSLHSDLAETERTLILEEF 100 (213)
Q Consensus 25 ~~~~~~~~~~K~~~L-~~ll~~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~---~~~~~~~lhg~~~~~~R~~~l~~F 100 (213)
.++..+...=|--.. ..+++.+. .+.++++.++++.-+...++.++.. | +++..++|+....++.
T Consensus 43 ~lv~apTGsGKT~~~~l~il~~~~----~~~~~l~i~P~r~La~q~~~~~~~~~~~g-~~v~~~~G~~~~~~~~------ 111 (702)
T 2p6r_A 43 LLLAMPTAAGKTLLAEMAMVREAI----KGGKSLYVVPLRALAGEKYESFKKWEKIG-LRIGISTGDYESRDEH------ 111 (702)
T ss_dssp EEEECSSHHHHHHHHHHHHHHHHH----TTCCEEEEESSHHHHHHHHHHHTTTTTTT-CCEEEECSSCBCCSSC------
T ss_pred EEEEcCCccHHHHHHHHHHHHHHH----hCCcEEEEeCcHHHHHHHHHHHHHHHhcC-CEEEEEeCCCCcchhh------
Confidence 455555544354443 33444422 2579999999999999999988532 4 7889999986543320
Q ss_pred hcccccccccccccCCCCCcCCCCCCceeEEEEeCCCCC-cCcCCCC-CCCCCEEEEecCC
Q 028124 101 RHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLP-LLSSGES-AISARVLINYELP 159 (213)
Q Consensus 101 r~g~~~~~~~~~~~~~~~~~~~~~~~~~~iLV~Td~~~~-~~~rGld-~~~v~~VI~yd~P 159 (213)
. +..+|+|+|+-.+- .+.++.. +.++++||.-+..
T Consensus 112 -~-----------------------~~~~Iiv~Tpe~l~~~l~~~~~~l~~~~~vIiDE~H 148 (702)
T 2p6r_A 112 -L-----------------------GDCDIIVTTSEKADSLIRNRASWIKAVSCLVVDEIH 148 (702)
T ss_dssp -S-----------------------TTCSEEEEEHHHHHHHHHTTCSGGGGCCEEEETTGG
T ss_pred -c-----------------------cCCCEEEECHHHHHHHHHcChhHHhhcCEEEEeeee
Confidence 1 13789999962000 0223333 6678888875443
No 214
>2wem_A Glutaredoxin-related protein 5; chromosome 14 open reading frame 87, Fe/S cluster, oxidoreductase, thioredoxin family, GLRX5, FLB4739, C14ORF87; HET: GTT; 2.40A {Homo sapiens} PDB: 2wul_A*
Probab=28.06 E-value=1.6e+02 Score=20.76 Aligned_cols=50 Identities=14% Similarity=0.042 Sum_probs=33.1
Q ss_pred HHHHHHHHHhhcCCCCCCcEEEEeC------chHHHHHHHHHHhccCCce-EEEecCCCCHHHHHH
Q 028124 37 ETLVELLHLVVAGRRPGLPMIVCCS------SRDELDAVCSAVSNLADIS-FSSLHSDLAETERTL 95 (213)
Q Consensus 37 ~~L~~ll~~~~~~~~~~~~~IIF~~------~~~~~~~l~~~L~~~~~~~-~~~lhg~~~~~~R~~ 95 (213)
+.+.++++. .+++||.. ++--|....+.|...+ +. ...+.=+..++.+..
T Consensus 11 ~~v~~~i~~--------~~Vvvfsk~t~~~p~Cp~C~~ak~lL~~~g-v~~~~~vdV~~d~~~~~~ 67 (118)
T 2wem_A 11 EQLDALVKK--------DKVVVFLKGTPEQPQCGFSNAVVQILRLHG-VRDYAAYNVLDDPELRQG 67 (118)
T ss_dssp HHHHHHHHH--------SSEEEEESBCSSSBSSHHHHHHHHHHHHTT-CCCCEEEESSSCHHHHHH
T ss_pred HHHHHHhcc--------CCEEEEEecCCCCCccHHHHHHHHHHHHcC-CCCCEEEEcCCCHHHHHH
Confidence 345555555 79999988 4888999999998886 53 444443344444443
No 215
>1nw9_B Caspase 9, apoptosis-related cysteine protease; XIAP, caspase inhibition, caspase activation, dimerization; 2.40A {Homo sapiens} SCOP: c.17.1.1 PDB: 1jxq_A* 2ar9_A
Probab=27.70 E-value=1.1e+02 Score=25.05 Aligned_cols=50 Identities=16% Similarity=0.195 Sum_probs=40.1
Q ss_pred CCCcEEEEeCch--------------HHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhcc
Q 028124 52 PGLPMIVCCSSR--------------DELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHT 103 (213)
Q Consensus 52 ~~~~~IIF~~~~--------------~~~~~l~~~L~~~~~~~~~~lhg~~~~~~R~~~l~~Fr~g 103 (213)
+-+-+|||.|.. ..++.|.+.|+..| +.+ .++.+++.++-.+.+++|...
T Consensus 20 ~rg~aLIInn~~f~~~~~l~~R~Gt~~D~~~L~~~f~~Lg-F~V-~~~~dlt~~em~~~l~~~~~~ 83 (277)
T 1nw9_B 20 PCGHCLIINNVNFCRESGLRTRTGSNIDCEKLRRRFSSLH-FMV-EVKGDLTAKKMVLALLELARQ 83 (277)
T ss_dssp SCEEEEEEECCCCCGGGTCCCCTTHHHHHHHHHHHHHHTT-EEE-EEEESCCHHHHHHHHHHHHHS
T ss_pred cccEEEEEeCcccCCCCCCCCCCCcHHHHHHHHHHHHHCC-CEE-EEEcCCCHHHHHHHHHHHHHh
Confidence 446788888752 47889999999998 565 567789999999999999764
No 216
>1u6t_A SH3 domain-binding glutamic acid-rich-like protein; SH3-binding, glutaredoxin, thioredoxin fold, crystallography, protein binding; HET: CIT; 1.90A {Homo sapiens} PDB: 1wry_A
Probab=26.63 E-value=70 Score=23.23 Aligned_cols=41 Identities=15% Similarity=0.169 Sum_probs=33.1
Q ss_pred EeCchHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHH
Q 028124 59 CCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEF 100 (213)
Q Consensus 59 F~~~~~~~~~l~~~L~~~~~~~~~~lhg~~~~~~R~~~l~~F 100 (213)
||.+++.|.++...|..++ +....+.=+++++.|....++.
T Consensus 12 ~c~~kk~c~~aK~lL~~kg-V~feEidI~~d~~~r~eM~~~~ 52 (121)
T 1u6t_A 12 STAIKKKQQDVLGFLEANK-IGFEEKDIAANEENRKWMRENV 52 (121)
T ss_dssp CHHHHHHHHHHHHHHHHTT-CCEEEEECTTCHHHHHHHHHHS
T ss_pred CccchHHHHHHHHHHHHCC-CceEEEECCCCHHHHHHHHHhc
Confidence 3456677899999999887 8888888778888888888776
No 217
>3ff4_A Uncharacterized protein; structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Cytophaga hutchinsonii atcc 33406}
Probab=26.44 E-value=50 Score=23.84 Aligned_cols=54 Identities=11% Similarity=0.036 Sum_probs=34.4
Q ss_pred CCCCCCEEEEecCCCChHHHHHhhccccCCCCeEEEEEeCchhHHHHHHHHHhcccc
Q 028124 146 SAISARVLINYELPTKKETYIRRMTTCLAADGSVINIVVGGEVVTLRSMEESLGLIV 202 (213)
Q Consensus 146 d~~~v~~VI~yd~P~~~~~yi~R~GR~~~~~g~~i~~~~~~e~~~~~~le~~l~~~~ 202 (213)
|+|++++++-+-.|.....++..+++.+-+ ++.|-..-....+.++-+..|.++
T Consensus 55 dlp~vDlavi~~p~~~v~~~v~e~~~~g~k---~v~~~~G~~~~e~~~~a~~~Girv 108 (122)
T 3ff4_A 55 VIEGVDTVTLYINPQNQLSEYNYILSLKPK---RVIFNPGTENEELEEILSENGIEP 108 (122)
T ss_dssp CCTTCCEEEECSCHHHHGGGHHHHHHHCCS---EEEECTTCCCHHHHHHHHHTTCEE
T ss_pred HCCCCCEEEEEeCHHHHHHHHHHHHhcCCC---EEEECCCCChHHHHHHHHHcCCeE
Confidence 777799999999998888888888876433 233333223334444444455543
No 218
>3s5u_A Putative uncharacterized protein; crispr, crispr adaptation mechanism, NEW spacer aquisition, binding, DNA binding protein; 2.70A {Enterococcus faecalis}
Probab=25.99 E-value=1.9e+02 Score=23.08 Aligned_cols=47 Identities=13% Similarity=0.186 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHhhcCCCCCCcEEEEeC-----chHHHHHHHHHHhccCCceEEEecCC
Q 028124 35 KMETLVELLHLVVAGRRPGLPMIVCCS-----SRDELDAVCSAVSNLADISFSSLHSD 87 (213)
Q Consensus 35 K~~~L~~ll~~~~~~~~~~~~~IIF~~-----~~~~~~~l~~~L~~~~~~~~~~lhg~ 87 (213)
|+....++... -..++++||+| |..+...+.+...... +++..+-..
T Consensus 148 ~i~~~lki~~e-----l~~kkllvfvNl~~YLt~eEl~~L~e~i~~~~-i~vL~IE~~ 199 (220)
T 3s5u_A 148 KVMEITQVHRY-----LSKKKLLIFINACTYLTEDEVQQVVEYISLNN-VDVLFLEQR 199 (220)
T ss_dssp HHHHHHHHHHH-----CTTCCEEEEESGGGGCCHHHHHHHHHHHHHTT-CCEEEEESS
T ss_pred HHHHHHHHHHH-----hcCCCEEEEEChHHhCCHHHHHHHHHHHHHhC-CeEEEEecc
Confidence 44444455444 45689999999 7788899999998875 888888776
No 219
>1wik_A Thioredoxin-like protein 2; picot homology 2 domain, picot protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1
Probab=25.69 E-value=1.6e+02 Score=19.94 Aligned_cols=45 Identities=4% Similarity=0.016 Sum_probs=31.4
Q ss_pred CcEEEEeC------chHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHH
Q 028124 54 LPMIVCCS------SRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEE 99 (213)
Q Consensus 54 ~~~IIF~~------~~~~~~~l~~~L~~~~~~~~~~lhg~~~~~~R~~~l~~ 99 (213)
.+++||.. ++..|..+...|...+ +....+.=+..+..+..+.+.
T Consensus 15 ~~vvvy~~g~~~~~~Cp~C~~ak~~L~~~~-i~~~~vdi~~~~~~~~~l~~~ 65 (109)
T 1wik_A 15 ASVMLFMKGNKQEAKCGFSKQILEILNSTG-VEYETFDILEDEEVRQGLKTF 65 (109)
T ss_dssp SSEEEEESSTTTCCCSSTHHHHHHHHHHTC-SCEEEEESSSCHHHHHHHHHH
T ss_pred CCEEEEEecCCCCCCCchHHHHHHHHHHcC-CCeEEEECCCCHHHHHHHHHH
Confidence 57899976 5667888888888886 777776655555555544443
No 220
>3qhq_A CSN2, SAG0897 family crispr-associated protein; helicase, transferase; 2.00A {Streptococcus agalactiae} PDB: 3toc_A 3v7f_A
Probab=24.89 E-value=1.8e+02 Score=23.39 Aligned_cols=47 Identities=17% Similarity=0.295 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHhhcCCCCCCcEEEEeC-----chHHHHHHHHHHhccCCceEEEecCC
Q 028124 35 KMETLVELLHLVVAGRRPGLPMIVCCS-----SRDELDAVCSAVSNLADISFSSLHSD 87 (213)
Q Consensus 35 K~~~L~~ll~~~~~~~~~~~~~IIF~~-----~~~~~~~l~~~L~~~~~~~~~~lhg~ 87 (213)
|+....++... -..++++||+| |..+...+.+...... +++..+-..
T Consensus 148 ki~~~lki~~e-----l~~kkllvfvNl~~YLt~eEl~~L~e~i~~~~-i~vLlIE~~ 199 (229)
T 3qhq_A 148 KCFEIIQVYHY-----LTKKNLLVFVNSGAYLTKDEVIKLCEYINLMQ-KSVLFLEPR 199 (229)
T ss_dssp HHHHHHHHHHH-----CTTCCEEEEESCGGGCCHHHHHHHHHHHHHHC-SCEEEEESS
T ss_pred HHHHHHHHHHH-----hcCCCEEEEEChHHhCCHHHHHHHHHHHHHhC-CeEEEEecc
Confidence 45555555555 45689999999 7788899999998775 888888765
No 221
>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp}
Probab=24.83 E-value=2.7e+02 Score=22.36 Aligned_cols=63 Identities=6% Similarity=0.086 Sum_probs=43.3
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhccCCceEEEecCCCCHHHH-HHHHHHHhcccccccccccccCCCCCcCCCCCCceeE
Q 028124 52 PGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETER-TLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHM 130 (213)
Q Consensus 52 ~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~lhg~~~~~~R-~~~l~~Fr~g~~~~~~~~~~~~~~~~~~~~~~~~~~i 130 (213)
.+-++++.-.+.+.++++++.+...+ .++..+..|++..+. ...+++.... -+++++
T Consensus 32 ~Ga~Vvi~~~~~~~~~~~~~~l~~~g-~~~~~~~~Dv~~~~~v~~~~~~~~~~---------------------~G~iDi 89 (255)
T 4g81_D 32 AGARVILNDIRATLLAESVDTLTRKG-YDAHGVAFDVTDELAIEAAFSKLDAE---------------------GIHVDI 89 (255)
T ss_dssp TTCEEEECCSCHHHHHHHHHHHHHTT-CCEEECCCCTTCHHHHHHHHHHHHHT---------------------TCCCCE
T ss_pred CCCEEEEEECCHHHHHHHHHHHHhcC-CcEEEEEeeCCCHHHHHHHHHHHHHH---------------------CCCCcE
Confidence 35677777777778888888898876 588899999866544 3344443331 135889
Q ss_pred EEEeCC
Q 028124 131 IVVTDA 136 (213)
Q Consensus 131 LV~Td~ 136 (213)
||..-.
T Consensus 90 LVNNAG 95 (255)
T 4g81_D 90 LINNAG 95 (255)
T ss_dssp EEECCC
T ss_pred EEECCC
Confidence 988764
No 222
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=24.44 E-value=93 Score=24.87 Aligned_cols=35 Identities=0% Similarity=0.026 Sum_probs=22.9
Q ss_pred CcEEEEeCchHHHHHHHHHHhccC---CceEEEecCCC
Q 028124 54 LPMIVCCSSRDELDAVCSAVSNLA---DISFSSLHSDL 88 (213)
Q Consensus 54 ~~~IIF~~~~~~~~~l~~~L~~~~---~~~~~~lhg~~ 88 (213)
.++||.|+++.-++...+.+.+.+ ...+..++++.
T Consensus 158 ~~~lil~Pt~~L~~q~~~~l~~~~~~~~~~~~~~~~~~ 195 (282)
T 1rif_A 158 GKILIIVPTTALTTQMADDFVDYRLFSHAMIKKIGGGA 195 (282)
T ss_dssp SEEEEECSSHHHHHHHHHHHHHHTSCCGGGEEECSTTC
T ss_pred CeEEEEECCHHHHHHHHHHHHHhcccccceEEEEeCCC
Confidence 478888888877777777776542 13455666654
No 223
>3gx8_A Monothiol glutaredoxin-5, mitochondrial; TRX fold, electron transport, mitochondrion, redox-active center, transit peptide, transport; 1.67A {Saccharomyces cerevisiae}
Probab=23.64 E-value=1.9e+02 Score=20.24 Aligned_cols=42 Identities=14% Similarity=0.122 Sum_probs=28.1
Q ss_pred CcEEEEeC------chHHHHHHHHHHhccCCce---EEEecCCCCHHHHHHH
Q 028124 54 LPMIVCCS------SRDELDAVCSAVSNLADIS---FSSLHSDLAETERTLI 96 (213)
Q Consensus 54 ~~~IIF~~------~~~~~~~l~~~L~~~~~~~---~~~lhg~~~~~~R~~~ 96 (213)
.+++||.. ++--|....+.|...+ +. ...+.=....+.|..+
T Consensus 16 ~~Vvvfsk~t~~~p~Cp~C~~ak~lL~~~g-v~~~~~~~~dv~~~~~~~~~l 66 (121)
T 3gx8_A 16 APVVLFMKGTPEFPKCGFSRATIGLLGNQG-VDPAKFAAYNVLEDPELREGI 66 (121)
T ss_dssp CSEEEEESBCSSSBCTTHHHHHHHHHHHHT-BCGGGEEEEECTTCHHHHHHH
T ss_pred CCEEEEEeccCCCCCCccHHHHHHHHHHcC-CCcceEEEEEecCCHHHHHHH
Confidence 78999988 4778888888888876 55 4444433444444433
No 224
>1f1j_A Caspase-7 protease; caspase-7, cysteine protease, hydrolase, apoptosis, hydrolas hydrolase inhibitor complex; 2.35A {Homo sapiens} SCOP: c.17.1.1 PDB: 1kmc_A 3r5k_A 1i4o_A 1gqf_A 3h1p_A 1shj_A* 1k86_A 1k88_A 1shl_A*
Probab=23.57 E-value=2.3e+02 Score=23.71 Aligned_cols=49 Identities=10% Similarity=0.093 Sum_probs=39.3
Q ss_pred CCcEEEEeCc--------------hHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhcc
Q 028124 53 GLPMIVCCSS--------------RDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHT 103 (213)
Q Consensus 53 ~~~~IIF~~~--------------~~~~~~l~~~L~~~~~~~~~~lhg~~~~~~R~~~l~~Fr~g 103 (213)
.+-+|||.|. ...++.|++.|+..| +.+ .++.+++..+-.+.+++|...
T Consensus 69 rg~aLIInN~~f~~~~~L~~R~G~~~Da~~L~~~f~~LG-F~V-~~~~dlt~~em~~~l~~~~~~ 131 (305)
T 1f1j_A 69 LGKCIIINNKNFDKVTGMGVRNGTDKDAEALFKCFRSLG-FDV-IVYNDCSCAKMQDLLKKASEE 131 (305)
T ss_dssp EEEEEEEECCCCCTTTTCCCCTTHHHHHHHHHHHHHHHT-EEE-EEEESCCHHHHHHHHHHHHHS
T ss_pred CCEEEEEechhcCCCccCccCCCcHHHHHHHHHHHHHCC-CEE-EEecCcCHHHHHHHHHHHHHh
Confidence 3568999874 357889999999998 565 566789999999999999764
No 225
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=23.24 E-value=1.8e+02 Score=19.67 Aligned_cols=110 Identities=11% Similarity=0.125 Sum_probs=63.1
Q ss_pred EEEEecCcchHHHHHHHHHHHhhcCCCCCCcEEEEeCchHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhccc
Q 028124 25 FYVAVDRLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTA 104 (213)
Q Consensus 25 ~~~~~~~~~~K~~~L~~ll~~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~lhg~~~~~~R~~~l~~Fr~g~ 104 (213)
..+.++++..-...|..+|+. .+-. +..+.+...+ .+.+.... ..++.+.-.|+......++++++...
T Consensus 8 ~iLivdd~~~~~~~l~~~l~~------~g~~-v~~~~~~~~a---~~~l~~~~-~dlvi~d~~l~~~~g~~~~~~l~~~~ 76 (140)
T 3grc_A 8 RILICEDDPDIARLLNLMLEK------GGFD-SDMVHSAAQA---LEQVARRP-YAAMTVDLNLPDQDGVSLIRALRRDS 76 (140)
T ss_dssp EEEEECSCHHHHHHHHHHHHH------TTCE-EEEECSHHHH---HHHHHHSC-CSEEEECSCCSSSCHHHHHHHHHTSG
T ss_pred CEEEEcCCHHHHHHHHHHHHH------CCCe-EEEECCHHHH---HHHHHhCC-CCEEEEeCCCCCCCHHHHHHHHHhCc
Confidence 355667666567777777776 2233 4444444333 33444444 57888887777777788888887621
Q ss_pred ccccccccccCCCCCcCCCCCCceeEEEEeCCCCCcCc------CCCCCCCCCEEEEecCCCChHHHHHhhcc
Q 028124 105 MKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLS------SGESAISARVLINYELPTKKETYIRRMTT 171 (213)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~iLV~Td~~~~~~~------rGld~~~v~~VI~yd~P~~~~~yi~R~GR 171 (213)
......+++.|+. .. +.+... ++-+ ..-|.+.+.+.+++.+
T Consensus 77 -------------------~~~~~~ii~~s~~----~~~~~~~~~~~~~g-~~~~--l~kP~~~~~l~~~i~~ 123 (140)
T 3grc_A 77 -------------------RTRDLAIVVVSAN----AREGELEFNSQPLA-VSTW--LEKPIDENLLILSLHR 123 (140)
T ss_dssp -------------------GGTTCEEEEECTT----HHHHHHHHCCTTTC-CCEE--ECSSCCHHHHHHHHHH
T ss_pred -------------------ccCCCCEEEEecC----CChHHHHHHhhhcC-CCEE--EeCCCCHHHHHHHHHH
Confidence 0023778887764 21 222222 2222 3346777777777655
No 226
>1c25_A CDC25A; hydrolase, cell cycle phosphatase,dual specificity protein phosphatase, CDK2; 2.30A {Homo sapiens} SCOP: c.46.1.1
Probab=23.08 E-value=51 Score=24.22 Aligned_cols=38 Identities=18% Similarity=0.301 Sum_probs=26.2
Q ss_pred CCCcE--EEEeC-chHHHHHHHHHHhc----------cCCceEEEecCCCC
Q 028124 52 PGLPM--IVCCS-SRDELDAVCSAVSN----------LADISFSSLHSDLA 89 (213)
Q Consensus 52 ~~~~~--IIF~~-~~~~~~~l~~~L~~----------~~~~~~~~lhg~~~ 89 (213)
+.+++ |+||. +-..+...+..|+. .|.-.+..+.|++.
T Consensus 86 ~~~~ivvv~yC~~sg~rs~~aa~~L~~~~~~~~~l~~~G~~~v~~l~GG~~ 136 (161)
T 1c25_A 86 DGKRVIVVFHCEFSSERGPRMCRYVRERDRLGNEYPKLHYPELYVLKGGYK 136 (161)
T ss_dssp TTSEEEEEEECSSSSSHHHHHHHHHHHHHHHTSSTTCCSSCCEEEETTHHH
T ss_pred CCCCeEEEEEcCCCCcchHHHHHHHHHHHHhhhhccccCCceEEEEcCCHH
Confidence 34565 45798 76777777788764 36336889999863
No 227
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=23.01 E-value=3.6e+02 Score=23.08 Aligned_cols=104 Identities=6% Similarity=-0.007 Sum_probs=58.4
Q ss_pred eEEEEEecCcchHHHH-HHHHHHHhhcCCCCCCcEEEEeCchHHHHHHHHHHhcc----CCceEEEecCCCCHHHHHHHH
Q 028124 23 RHFYVAVDRLQFKMET-LVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNL----ADISFSSLHSDLAETERTLIL 97 (213)
Q Consensus 23 ~~~~~~~~~~~~K~~~-L~~ll~~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~----~~~~~~~lhg~~~~~~R~~~l 97 (213)
+..++..+...=|-.. +..++..+.. .....++||.++++.-+..+++.+... +.+.+....++......
T Consensus 132 ~~~l~~a~TGsGKT~~~~l~il~~l~~-~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 206 (479)
T 3fmp_B 132 QNLIAQSQSGTGKTAAFVLAMLSQVEP-ANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG---- 206 (479)
T ss_dssp CEEEEECCSSSSHHHHHHHHHHTTCCT-TSCSCCEEEECSSHHHHHHHHHHHHHHHTTSTTCCEEEESTTCCCCTT----
T ss_pred CcEEEEcCCCCchhHHHHHHHHHHHhh-cCCCCcEEEEeChHHHHHHHHHHHHHHHhhCCCceEEEEeCCcccccc----
Confidence 3455555554446655 4444444222 223448999999999998887766543 23455555554321110
Q ss_pred HHHhcccccccccccccCCCCCcCCCCCCceeEEEEeCCCCCc-C--cCCCCCCCCCEEEEec
Q 028124 98 EEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPL-L--SSGESAISARVLINYE 157 (213)
Q Consensus 98 ~~Fr~g~~~~~~~~~~~~~~~~~~~~~~~~~~iLV~Td~~~~~-~--~rGld~~~v~~VI~yd 157 (213)
.. ...+|+|+|.-.+-. + ...+++.++++||.-+
T Consensus 207 ---~~-----------------------~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDE 243 (479)
T 3fmp_B 207 ---QK-----------------------ISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDE 243 (479)
T ss_dssp ---CC-----------------------CCCSEEEECHHHHHHHHTTSCCCCGGGCCEEEECC
T ss_pred ---cc-----------------------CCCCEEEECchHHHHHHHhcCCcCcccCCEEEEEC
Confidence 01 125799999752100 0 1356778899888644
No 228
>2wci_A Glutaredoxin-4; redox-active center, iron-sulfur cluster scaffolder, Fe2S2, homodimer, transport, glutathione, thioredoxin fold; HET: GSH; 1.90A {Escherichia coli} PDB: 1yka_A
Probab=22.20 E-value=2.3e+02 Score=20.50 Aligned_cols=44 Identities=11% Similarity=0.056 Sum_probs=31.3
Q ss_pred CcEEEEeC------chHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHH
Q 028124 54 LPMIVCCS------SRDELDAVCSAVSNLADISFSSLHSDLAETERTLILE 98 (213)
Q Consensus 54 ~~~IIF~~------~~~~~~~l~~~L~~~~~~~~~~lhg~~~~~~R~~~l~ 98 (213)
.+++||+. ++-.|..+...|...+ +....+.=+..+..+..+.+
T Consensus 35 ~~Vvvy~ks~~~~~~Cp~C~~ak~~L~~~g-v~y~~vdI~~d~~~~~~L~~ 84 (135)
T 2wci_A 35 NPILLYMKGSPKLPSCGFSAQAVQALAACG-ERFAYVDILQNPDIRAELPK 84 (135)
T ss_dssp CSEEEEESBCSSSBSSHHHHHHHHHHHTTC-SCCEEEEGGGCHHHHHHHHH
T ss_pred CCEEEEEEecCCCCCCccHHHHHHHHHHcC-CceEEEECCCCHHHHHHHHH
Confidence 68999977 6888999999998886 66666655445555444433
No 229
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=21.41 E-value=2.8e+02 Score=27.11 Aligned_cols=38 Identities=8% Similarity=0.067 Sum_probs=31.5
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhcc-CCceEEEecCCCC
Q 028124 52 PGLPMIVCCSSRDELDAVCSAVSNL-ADISFSSLHSDLA 89 (213)
Q Consensus 52 ~~~~~IIF~~~~~~~~~l~~~L~~~-~~~~~~~lhg~~~ 89 (213)
.+.++||.++++.-+..+++.|+.. +++.+..++|+.+
T Consensus 81 ~g~~vlvl~PtraLa~Q~~~~l~~~~~~~~v~~l~G~~~ 119 (997)
T 4a4z_A 81 NMTKTIYTSPIKALSNQKFRDFKETFDDVNIGLITGDVQ 119 (997)
T ss_dssp TTCEEEEEESCGGGHHHHHHHHHTTC--CCEEEECSSCE
T ss_pred cCCeEEEEeCCHHHHHHHHHHHHHHcCCCeEEEEeCCCc
Confidence 4678999999999999999999875 2478999999864
No 230
>3r0j_A Possible two component system response transcript positive regulator PHOP; beta-alpha fold, winged helix-turn-helix; 2.50A {Mycobacterium tuberculosis}
Probab=21.32 E-value=2.8e+02 Score=21.24 Aligned_cols=112 Identities=13% Similarity=0.072 Sum_probs=62.8
Q ss_pred EEEEecCcchHHHHHHHHHHHhhcCCCCCCcEEEEeCchHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhccc
Q 028124 25 FYVAVDRLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTA 104 (213)
Q Consensus 25 ~~~~~~~~~~K~~~L~~ll~~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~lhg~~~~~~R~~~l~~Fr~g~ 104 (213)
..+.++++..-...|..+|+. .+-.+. .+.+-..+-. .+.... ..++.+.-.|+.....+++++++...
T Consensus 25 ~ILivdd~~~~~~~l~~~L~~------~g~~v~-~~~~~~~al~---~~~~~~-~dlvllD~~lp~~~g~~~~~~lr~~~ 93 (250)
T 3r0j_A 25 RVLVVDDEANIVELLSVSLKF------QGFEVY-TATNGAQALD---RARETR-PDAVILDVXMPGMDGFGVLRRLRADG 93 (250)
T ss_dssp EEEEECSCHHHHHHHHHHHHH------TTCEEE-EESSHHHHHH---HHHHHC-CSEEEEESCCSSSCHHHHHHHHHHTT
T ss_pred eEEEEECCHHHHHHHHHHHHH------CCCEEE-EECCHHHHHH---HHHhCC-CCEEEEeCCCCCCCHHHHHHHHHhcC
Confidence 456677766566667777765 233444 4444444333 333333 57788887787777788888887642
Q ss_pred ccccccccccCCCCCcCCCCCCceeEEEEeCCCC-CcCcCCCCCCCCCEEEEecCCCChHHHHHhhcc
Q 028124 105 MKWNQKVTEQSGDESETGKDEHKSHMIVVTDACL-PLLSSGESAISARVLINYELPTKKETYIRRMTT 171 (213)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~iLV~Td~~~-~~~~rGld~~~v~~VI~yd~P~~~~~yi~R~GR 171 (213)
....+++.|...- ....++++....+++. -|.+.+.+..++-+
T Consensus 94 ---------------------~~~~ii~lt~~~~~~~~~~~~~~Ga~~yl~---Kp~~~~~L~~~i~~ 137 (250)
T 3r0j_A 94 ---------------------IDAPALFLTARDSLQDKIAGLTLGGDDYVT---KPFSLEEVVARLRV 137 (250)
T ss_dssp ---------------------CCCCEEEEECSTTHHHHHHHHTSTTCEEEE---SSCCHHHHHHHHHH
T ss_pred ---------------------CCCCEEEEECCCCHHHHHHHHHcCCcEEEe---CCCCHHHHHHHHHH
Confidence 1366777776400 0012344444334433 36777777666643
No 231
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=20.95 E-value=2.4e+02 Score=26.53 Aligned_cols=39 Identities=13% Similarity=0.174 Sum_probs=27.0
Q ss_pred CCCCcEEEEeCchHHHHHHHHHHhcc-CCceEEEecCCCCH
Q 028124 51 RPGLPMIVCCSSRDELDAVCSAVSNL-ADISFSSLHSDLAE 90 (213)
Q Consensus 51 ~~~~~~IIF~~~~~~~~~l~~~L~~~-~~~~~~~lhg~~~~ 90 (213)
...+++||.|+ ...+......+.+. +...+..+||+...
T Consensus 284 ~~~~~~LIV~P-~sll~qW~~E~~~~~p~~~v~~~~g~~~~ 323 (800)
T 3mwy_W 284 RQNGPHIIVVP-LSTMPAWLDTFEKWAPDLNCICYMGNQKS 323 (800)
T ss_dssp SCCSCEEEECC-TTTHHHHHHHHHHHSTTCCEEECCCSSHH
T ss_pred CCCCCEEEEEC-chHHHHHHHHHHHHCCCceEEEEeCCHHH
Confidence 34678999999 45566666666543 45788899987543
No 232
>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum}
Probab=20.43 E-value=3.2e+02 Score=21.62 Aligned_cols=49 Identities=14% Similarity=0.321 Sum_probs=35.5
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhccCCceEEEecCCCCHHHH-HHHHHHHh
Q 028124 52 PGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETER-TLILEEFR 101 (213)
Q Consensus 52 ~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~lhg~~~~~~R-~~~l~~Fr 101 (213)
.+.++++...+....+.+.+.+...+ ..+..+..|++..+. .+.+++..
T Consensus 55 ~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~Dl~d~~~v~~~~~~~~ 104 (276)
T 3r1i_A 55 AGAQVAVAARHSDALQVVADEIAGVG-GKALPIRCDVTQPDQVRGMLDQMT 104 (276)
T ss_dssp TTCEEEEEESSGGGGHHHHHHHHHTT-CCCEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHhcC-CeEEEEEcCCCCHHHHHHHHHHHH
Confidence 36789999988888899999888766 477788888865543 34444443
Done!