Query 028125
Match_columns 213
No_of_seqs 135 out of 1234
Neff 7.4
Searched_HMMs 46136
Date Fri Mar 29 06:38:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028125.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028125hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 CHL00028 clpP ATP-dependent Cl 100.0 7.1E-57 1.5E-61 370.5 22.7 197 2-198 1-198 (200)
2 PRK12552 ATP-dependent Clp pro 100.0 4.1E-55 8.8E-60 363.2 21.9 199 2-200 1-218 (222)
3 KOG0840 ATP-dependent Clp prot 100.0 3.4E-55 7.3E-60 363.4 19.2 212 1-212 62-274 (275)
4 PRK14513 ATP-dependent Clp pro 100.0 8.1E-53 1.8E-57 345.9 21.8 196 2-201 1-197 (201)
5 COG0740 ClpP Protease subunit 100.0 1E-52 2.2E-57 341.9 20.6 183 19-201 15-197 (200)
6 PRK00277 clpP ATP-dependent Cl 100.0 2.4E-51 5.2E-56 338.4 22.1 197 2-198 1-198 (200)
7 PRK12551 ATP-dependent Clp pro 100.0 2.8E-51 6E-56 336.2 21.3 183 19-201 13-195 (196)
8 PRK14514 ATP-dependent Clp pro 100.0 3.3E-51 7.1E-56 340.4 21.2 190 6-197 31-220 (221)
9 TIGR00493 clpP ATP-dependent C 100.0 4.5E-48 9.9E-53 316.8 21.1 188 6-195 3-190 (191)
10 PF00574 CLP_protease: Clp pro 100.0 3.5E-47 7.7E-52 308.9 15.4 179 19-197 4-182 (182)
11 PRK14512 ATP-dependent Clp pro 100.0 4.3E-46 9.2E-51 306.2 20.7 177 22-198 14-190 (197)
12 PRK12553 ATP-dependent Clp pro 100.0 1.1E-45 2.3E-50 306.2 20.0 180 19-198 23-204 (207)
13 cd07017 S14_ClpP_2 Caseinolyti 100.0 1.6E-44 3.5E-49 291.0 17.6 171 23-193 1-171 (171)
14 cd07013 S14_ClpP Caseinolytic 100.0 2.6E-43 5.6E-48 281.8 19.2 162 32-193 1-162 (162)
15 cd07016 S14_ClpP_1 Caseinolyti 100.0 6.9E-35 1.5E-39 232.1 19.0 156 33-193 2-160 (160)
16 cd07015 Clp_protease_NfeD Nodu 100.0 1.2E-32 2.6E-37 221.6 17.7 158 32-198 2-167 (172)
17 cd00394 Clp_protease_like Case 100.0 3.1E-32 6.8E-37 216.6 17.9 159 33-193 1-161 (161)
18 cd07020 Clp_protease_NfeD_1 No 100.0 2.2E-29 4.7E-34 205.6 18.2 168 32-203 2-173 (187)
19 cd07021 Clp_protease_NfeD_like 100.0 5.4E-28 1.2E-32 196.0 17.3 159 32-198 2-173 (178)
20 TIGR00706 SppA_dom signal pept 99.9 9.7E-24 2.1E-28 174.9 15.9 167 32-202 3-201 (207)
21 COG0616 SppA Periplasmic serin 99.9 1.3E-23 2.7E-28 184.5 15.1 167 31-200 61-266 (317)
22 cd07014 S49_SppA Signal peptid 99.9 6.5E-23 1.4E-27 165.8 15.3 147 45-200 24-173 (177)
23 cd07023 S49_Sppa_N_C Signal pe 99.9 8.7E-23 1.9E-27 169.1 16.0 167 32-201 3-205 (208)
24 cd07022 S49_Sppa_36K_type Sign 99.9 1.5E-22 3.2E-27 168.6 16.5 167 32-202 3-212 (214)
25 TIGR00705 SppA_67K signal pept 99.9 4.1E-22 9E-27 187.3 17.4 166 33-201 312-516 (584)
26 PRK10949 protease 4; Provision 99.9 2.1E-21 4.5E-26 183.1 17.0 168 31-201 328-534 (618)
27 cd07019 S49_SppA_1 Signal pept 99.9 4.1E-21 8.9E-26 159.6 16.9 168 32-202 3-209 (211)
28 cd07018 S49_SppA_67K_type Sign 99.8 3.7E-20 8.1E-25 155.0 14.9 159 39-201 25-218 (222)
29 PRK11778 putative inner membra 99.8 7E-20 1.5E-24 160.6 16.7 166 31-201 92-291 (330)
30 COG1030 NfeD Membrane-bound se 99.8 4.3E-19 9.3E-24 158.8 14.0 159 30-196 27-188 (436)
31 PF01972 SDH_sah: Serine dehyd 99.7 6.3E-17 1.4E-21 137.3 16.3 158 36-200 68-252 (285)
32 TIGR00705 SppA_67K signal pept 99.6 3.1E-14 6.6E-19 134.3 14.6 155 44-201 77-274 (584)
33 PF01343 Peptidase_S49: Peptid 99.5 5E-14 1.1E-18 111.6 10.9 114 85-201 2-145 (154)
34 PRK10949 protease 4; Provision 99.5 2.2E-13 4.9E-18 128.8 14.2 154 45-201 97-293 (618)
35 cd06558 crotonase-like Crotona 99.2 5.9E-10 1.3E-14 90.5 12.7 150 32-200 10-185 (195)
36 COG3904 Predicted periplasmic 99.0 2.9E-09 6.2E-14 87.2 11.5 154 32-192 77-236 (245)
37 PRK05869 enoyl-CoA hydratase; 99.0 9.3E-09 2E-13 86.1 14.2 150 32-200 19-191 (222)
38 PRK06495 enoyl-CoA hydratase; 99.0 1.2E-08 2.5E-13 87.2 14.1 146 32-199 15-185 (257)
39 PRK08258 enoyl-CoA hydratase; 99.0 1.7E-08 3.7E-13 87.1 14.6 148 33-199 29-205 (277)
40 PRK07511 enoyl-CoA hydratase; 99.0 1.5E-08 3.2E-13 86.6 14.0 149 32-199 14-189 (260)
41 PRK06688 enoyl-CoA hydratase; 99.0 1.3E-08 2.9E-13 86.7 13.7 148 33-199 17-187 (259)
42 PRK06143 enoyl-CoA hydratase; 98.9 2.2E-08 4.8E-13 85.5 13.9 148 32-199 18-190 (256)
43 PRK03580 carnitinyl-CoA dehydr 98.9 2.2E-08 4.8E-13 85.7 13.8 149 32-199 14-185 (261)
44 PRK06190 enoyl-CoA hydratase; 98.9 3.8E-08 8.2E-13 84.2 14.4 148 33-199 16-185 (258)
45 PRK11423 methylmalonyl-CoA dec 98.9 2.9E-08 6.3E-13 85.0 13.0 148 32-199 15-187 (261)
46 PRK09674 enoyl-CoA hydratase-i 98.9 4.5E-08 9.8E-13 83.5 14.1 149 32-199 13-183 (255)
47 PRK09076 enoyl-CoA hydratase; 98.9 6.7E-08 1.4E-12 82.6 14.5 147 33-199 15-186 (258)
48 TIGR03210 badI 2-ketocyclohexa 98.9 5.2E-08 1.1E-12 83.2 13.8 149 32-199 13-185 (256)
49 PRK07110 polyketide biosynthes 98.9 4.5E-08 9.8E-13 83.2 13.2 149 32-199 16-185 (249)
50 PRK07658 enoyl-CoA hydratase; 98.9 5E-08 1.1E-12 83.1 13.5 149 32-199 13-185 (257)
51 PF00378 ECH: Enoyl-CoA hydrat 98.9 4E-08 8.7E-13 83.0 12.8 147 32-199 9-181 (245)
52 PRK05809 3-hydroxybutyryl-CoA 98.9 4.8E-08 1E-12 83.4 13.3 147 32-199 15-188 (260)
53 TIGR03189 dienoyl_CoA_hyt cycl 98.9 7.1E-08 1.5E-12 82.2 14.3 146 32-197 12-177 (251)
54 PRK08138 enoyl-CoA hydratase; 98.9 7E-08 1.5E-12 82.6 14.3 146 32-199 19-189 (261)
55 PLN02600 enoyl-CoA hydratase 98.9 6.7E-08 1.4E-12 82.3 14.0 148 33-199 7-179 (251)
56 PRK06210 enoyl-CoA hydratase; 98.9 4.3E-08 9.2E-13 84.3 13.0 145 33-199 18-199 (272)
57 PRK05981 enoyl-CoA hydratase; 98.9 5.9E-08 1.3E-12 83.1 13.5 149 32-199 15-194 (266)
58 PRK08150 enoyl-CoA hydratase; 98.9 8.9E-08 1.9E-12 81.7 14.4 147 32-200 13-184 (255)
59 PRK05980 enoyl-CoA hydratase; 98.9 4.9E-08 1.1E-12 83.4 12.7 146 32-199 14-191 (260)
60 PLN02888 enoyl-CoA hydratase 98.9 7.6E-08 1.6E-12 82.6 13.8 149 32-199 21-190 (265)
61 PRK07938 enoyl-CoA hydratase; 98.8 5.8E-08 1.3E-12 82.6 12.8 146 32-199 13-182 (249)
62 PRK06023 enoyl-CoA hydratase; 98.8 6.5E-08 1.4E-12 82.3 13.1 149 32-199 17-188 (251)
63 PRK08260 enoyl-CoA hydratase; 98.8 6.6E-08 1.4E-12 84.2 13.3 149 32-199 15-204 (296)
64 TIGR01929 menB naphthoate synt 98.8 7E-08 1.5E-12 82.5 13.0 148 32-199 14-188 (259)
65 PRK08788 enoyl-CoA hydratase; 98.8 7E-08 1.5E-12 83.9 13.1 172 8-199 5-212 (287)
66 PRK08139 enoyl-CoA hydratase; 98.8 1.2E-07 2.6E-12 81.4 14.4 146 32-199 22-194 (266)
67 PRK07854 enoyl-CoA hydratase; 98.8 1.1E-07 2.4E-12 80.6 13.9 144 32-195 11-173 (243)
68 PLN02921 naphthoate synthase 98.8 1.1E-07 2.4E-12 84.1 14.3 148 33-199 79-252 (327)
69 PLN03214 probable enoyl-CoA hy 98.8 7.6E-08 1.6E-12 83.2 13.0 151 32-200 23-200 (278)
70 PRK06494 enoyl-CoA hydratase; 98.8 1.3E-07 2.8E-12 80.8 14.3 149 32-199 15-185 (259)
71 PRK07327 enoyl-CoA hydratase; 98.8 9.8E-08 2.1E-12 82.0 13.5 148 32-199 23-197 (268)
72 PLN02664 enoyl-CoA hydratase/d 98.8 1.1E-07 2.3E-12 82.1 13.7 146 32-196 19-199 (275)
73 PRK09245 enoyl-CoA hydratase; 98.8 1.1E-07 2.3E-12 81.6 13.7 149 32-199 14-194 (266)
74 PRK07509 enoyl-CoA hydratase; 98.8 1E-07 2.2E-12 81.5 13.3 145 32-195 14-189 (262)
75 TIGR02280 PaaB1 phenylacetate 98.8 1.1E-07 2.3E-12 81.2 13.3 148 32-199 10-184 (256)
76 PRK05864 enoyl-CoA hydratase; 98.8 6.1E-08 1.3E-12 83.6 11.9 150 32-199 21-201 (276)
77 PRK07396 dihydroxynaphthoic ac 98.8 1.2E-07 2.7E-12 81.6 13.9 148 32-199 24-198 (273)
78 PRK05995 enoyl-CoA hydratase; 98.8 1.2E-07 2.6E-12 81.1 13.6 147 32-198 15-188 (262)
79 PRK06144 enoyl-CoA hydratase; 98.8 1.2E-07 2.6E-12 81.2 13.5 149 32-199 19-194 (262)
80 PRK07468 enoyl-CoA hydratase; 98.8 9.9E-08 2.2E-12 81.7 12.7 148 32-199 16-190 (262)
81 PRK06142 enoyl-CoA hydratase; 98.8 1.1E-07 2.3E-12 81.9 12.9 148 32-198 17-200 (272)
82 PRK08290 enoyl-CoA hydratase; 98.8 8E-08 1.7E-12 83.5 12.2 146 33-199 16-207 (288)
83 PRK06127 enoyl-CoA hydratase; 98.8 1.8E-07 4E-12 80.4 14.2 149 32-199 22-197 (269)
84 PRK07657 enoyl-CoA hydratase; 98.8 1.6E-07 3.4E-12 80.3 13.6 147 32-199 15-188 (260)
85 PRK05862 enoyl-CoA hydratase; 98.8 1.9E-07 4.1E-12 79.7 14.0 148 33-199 16-185 (257)
86 PRK07260 enoyl-CoA hydratase; 98.8 1.3E-07 2.8E-12 80.6 13.0 143 33-199 14-189 (255)
87 PRK08140 enoyl-CoA hydratase; 98.8 2.5E-07 5.4E-12 79.1 14.3 148 32-199 15-190 (262)
88 PRK08259 enoyl-CoA hydratase; 98.8 2.6E-07 5.6E-12 78.9 13.8 150 32-200 14-185 (254)
89 PRK06072 enoyl-CoA hydratase; 98.8 3E-07 6.4E-12 78.2 14.1 142 32-193 11-173 (248)
90 PRK06213 enoyl-CoA hydratase; 98.7 2.9E-07 6.3E-12 77.2 13.8 145 32-199 14-183 (229)
91 PRK07799 enoyl-CoA hydratase; 98.7 2.8E-07 6.2E-12 78.9 14.0 149 32-199 16-191 (263)
92 PRK08321 naphthoate synthase; 98.7 3.5E-07 7.5E-12 80.0 14.7 147 33-199 37-227 (302)
93 PRK08252 enoyl-CoA hydratase; 98.7 3.2E-07 6.9E-12 78.2 14.1 148 33-199 15-182 (254)
94 PRK06563 enoyl-CoA hydratase; 98.7 2.7E-07 5.8E-12 78.7 13.5 146 32-199 10-183 (255)
95 TIGR03200 dearomat_oah 6-oxocy 98.7 3E-07 6.5E-12 81.9 14.2 146 33-199 40-215 (360)
96 PRK05674 gamma-carboxygeranoyl 98.7 2.5E-07 5.3E-12 79.4 13.1 146 33-198 18-190 (265)
97 PRK09120 p-hydroxycinnamoyl Co 98.7 3.3E-07 7.1E-12 79.1 13.9 146 32-199 19-195 (275)
98 PRK08272 enoyl-CoA hydratase; 98.7 2.8E-07 6E-12 80.5 13.1 146 32-199 21-215 (302)
99 PRK12478 enoyl-CoA hydratase; 98.7 1.8E-07 3.9E-12 81.7 11.6 145 32-199 16-200 (298)
100 PRK07112 polyketide biosynthes 98.7 4.3E-07 9.3E-12 77.5 13.4 145 32-198 15-185 (255)
101 PLN02267 enoyl-CoA hydratase/i 98.7 9.1E-07 2E-11 74.9 15.0 146 32-196 11-184 (239)
102 PRK08184 benzoyl-CoA-dihydrodi 98.7 2.9E-07 6.2E-12 86.6 12.0 143 40-199 49-219 (550)
103 PRK07659 enoyl-CoA hydratase; 98.6 5.3E-07 1.2E-11 77.1 12.1 140 33-198 18-187 (260)
104 PRK05870 enoyl-CoA hydratase; 98.6 5E-07 1.1E-11 76.8 11.5 141 32-194 14-181 (249)
105 PRK12319 acetyl-CoA carboxylas 98.6 8E-07 1.7E-11 76.0 12.0 135 32-197 71-215 (256)
106 TIGR00513 accA acetyl-CoA carb 98.6 7.8E-07 1.7E-11 78.0 11.7 136 31-197 123-268 (316)
107 PLN03230 acetyl-coenzyme A car 98.6 6.9E-07 1.5E-11 80.5 11.1 130 37-197 199-338 (431)
108 TIGR02440 FadJ fatty oxidation 98.5 1.5E-06 3.2E-11 84.1 13.8 148 32-199 12-189 (699)
109 PRK05724 acetyl-CoA carboxylas 98.5 1.2E-06 2.6E-11 76.9 12.0 135 32-197 124-268 (319)
110 PRK07827 enoyl-CoA hydratase; 98.5 2.1E-06 4.6E-11 73.4 13.1 142 32-195 17-187 (260)
111 COG1024 CaiD Enoyl-CoA hydrata 98.5 1.5E-06 3.2E-11 74.1 11.6 144 31-196 15-186 (257)
112 KOG1680 Enoyl-CoA hydratase [L 98.5 1.5E-06 3.3E-11 74.2 11.3 146 32-199 48-218 (290)
113 PRK11730 fadB multifunctional 98.5 2.8E-06 6.2E-11 82.3 14.3 148 32-198 18-192 (715)
114 PRK05617 3-hydroxyisobutyryl-C 98.5 1.2E-06 2.6E-11 78.0 10.9 144 32-200 14-191 (342)
115 CHL00198 accA acetyl-CoA carbo 98.5 1.7E-06 3.8E-11 75.9 11.4 132 35-197 130-271 (322)
116 TIGR02437 FadB fatty oxidation 98.5 3.4E-06 7.3E-11 81.8 14.5 147 32-198 18-192 (714)
117 PLN02874 3-hydroxyisobutyryl-C 98.5 2.7E-06 5.8E-11 76.8 12.9 150 31-200 21-196 (379)
118 TIGR03222 benzo_boxC benzoyl-C 98.5 1.6E-06 3.6E-11 81.4 11.9 143 40-199 45-215 (546)
119 PLN02157 3-hydroxyisobutyryl-C 98.5 3.1E-06 6.8E-11 76.8 13.4 149 31-199 47-223 (401)
120 PLN02988 3-hydroxyisobutyryl-C 98.5 3.7E-06 7.9E-11 75.9 13.7 150 31-200 19-196 (381)
121 PRK11154 fadJ multifunctional 98.4 4E-06 8.7E-11 81.2 14.2 148 32-199 17-194 (708)
122 PLN03229 acetyl-coenzyme A car 98.4 3.9E-06 8.5E-11 80.1 13.3 136 31-197 214-359 (762)
123 PLN02851 3-hydroxyisobutyryl-C 98.4 6.2E-06 1.3E-10 75.0 13.8 149 31-199 52-228 (407)
124 TIGR02441 fa_ox_alpha_mit fatt 98.3 1.2E-05 2.6E-10 78.2 13.6 143 33-196 25-198 (737)
125 TIGR03134 malonate_gamma malon 98.3 1.6E-05 3.5E-10 67.4 12.1 132 40-199 45-192 (238)
126 TIGR03222 benzo_boxC benzoyl-C 98.2 2.6E-05 5.6E-10 73.4 13.3 140 40-199 295-468 (546)
127 TIGR01117 mmdA methylmalonyl-C 98.0 3.6E-05 7.8E-10 72.0 10.6 140 38-198 329-483 (512)
128 PRK08184 benzoyl-CoA-dihydrodi 97.9 0.0001 2.2E-09 69.6 10.8 141 40-199 299-472 (550)
129 COG0825 AccA Acetyl-CoA carbox 97.8 0.00012 2.7E-09 63.0 8.6 108 61-197 150-267 (317)
130 KOG1681 Enoyl-CoA isomerase [L 97.6 8.8E-05 1.9E-09 62.1 5.4 103 78-198 115-217 (292)
131 PF01039 Carboxyl_trans: Carbo 97.6 8.3E-05 1.8E-09 69.3 5.5 147 38-199 308-467 (493)
132 PLN02820 3-methylcrotonyl-CoA 97.6 0.00056 1.2E-08 64.8 10.6 151 38-198 380-542 (569)
133 PRK05654 acetyl-CoA carboxylas 97.4 0.0016 3.5E-08 56.8 10.8 125 39-201 136-271 (292)
134 TIGR00515 accD acetyl-CoA carb 97.4 0.0019 4.2E-08 56.1 10.4 124 40-201 136-270 (285)
135 KOG1679 Enoyl-CoA hydratase [L 97.4 0.00046 1E-08 57.4 6.0 129 46-197 61-213 (291)
136 TIGR03133 malonate_beta malona 97.2 0.0027 5.8E-08 55.0 9.0 86 43-130 78-177 (274)
137 COG0447 MenB Dihydroxynaphthoi 97.1 0.0023 4.9E-08 53.4 7.2 137 41-198 44-206 (282)
138 PRK07189 malonate decarboxylas 97.0 0.004 8.7E-08 54.5 8.3 85 44-130 88-186 (301)
139 KOG1682 Enoyl-CoA isomerase [L 96.9 0.0025 5.4E-08 52.8 6.0 102 80-201 116-217 (287)
140 PF06833 MdcE: Malonate decarb 96.1 0.054 1.2E-06 45.7 9.5 111 57-195 60-186 (234)
141 COG4799 Acetyl-CoA carboxylase 96.0 0.027 5.8E-07 52.8 7.5 92 37-130 337-440 (526)
142 PLN02820 3-methylcrotonyl-CoA 95.5 0.097 2.1E-06 49.8 9.6 89 37-129 142-244 (569)
143 CHL00174 accD acetyl-CoA carbo 94.5 0.24 5.1E-06 43.4 8.4 83 44-130 153-247 (296)
144 KOG0016 Enoyl-CoA hydratase/is 94.1 0.38 8.2E-06 41.2 8.5 99 81-198 99-197 (266)
145 TIGR01117 mmdA methylmalonyl-C 94.0 0.37 8.1E-06 45.4 9.2 84 43-130 101-194 (512)
146 KOG1684 Enoyl-CoA hydratase [L 91.8 0.44 9.4E-06 42.8 5.9 93 30-124 47-168 (401)
147 PF08496 Peptidase_S49_N: Pept 91.7 0.29 6.3E-06 38.9 4.3 44 33-76 102-146 (155)
148 PF01039 Carboxyl_trans: Carbo 91.3 0.25 5.3E-06 46.3 4.1 84 43-130 76-171 (493)
149 cd06567 Peptidase_S41 C-termin 91.3 1.5 3.3E-05 36.0 8.5 70 42-113 72-168 (224)
150 TIGR00225 prc C-terminal pepti 88.4 2.1 4.5E-05 37.8 7.5 72 41-113 162-258 (334)
151 cd07560 Peptidase_S41_CPP C-te 87.8 4.1 8.9E-05 33.7 8.4 72 41-113 59-155 (211)
152 PLN00049 carboxyl-terminal pro 87.2 2.6 5.7E-05 38.2 7.5 71 41-112 205-302 (389)
153 PRK11186 carboxy-terminal prot 85.7 3 6.5E-05 40.6 7.4 67 44-111 367-459 (667)
154 cd07561 Peptidase_S41_CPP_like 85.5 4.2 9E-05 34.8 7.5 44 43-87 77-121 (256)
155 COG0793 Prc Periplasmic protea 84.6 3.6 7.7E-05 37.7 7.1 69 43-112 216-310 (406)
156 COG4799 Acetyl-CoA carboxylase 81.2 4.6 9.9E-05 38.2 6.4 82 44-129 111-202 (526)
157 smart00245 TSPc tail specific 79.8 10 0.00022 30.6 7.4 71 41-112 39-135 (192)
158 KOG0540 3-Methylcrotonyl-CoA c 79.1 6.7 0.00015 36.4 6.6 85 38-127 363-461 (536)
159 PF03572 Peptidase_S41: Peptid 78.8 5.3 0.00012 30.8 5.3 67 45-112 17-113 (169)
160 cd07562 Peptidase_S41_TRI Tric 76.1 20 0.00044 30.4 8.5 81 28-113 84-187 (266)
161 cd07563 Peptidase_S41_IRBP Int 74.6 22 0.00047 29.8 8.3 53 61-113 95-181 (250)
162 PF09675 Chlamy_scaf: Chlamydi 73.4 31 0.00068 25.8 7.6 58 139-198 32-92 (114)
163 PLN00125 Succinyl-CoA ligase [ 72.9 11 0.00024 33.1 6.2 65 32-101 179-245 (300)
164 PHA00099 minor capsid protein 71.4 33 0.00071 26.5 7.5 52 137-190 60-114 (147)
165 TIGR02763 chlamy_scaf chlamydi 70.2 29 0.00063 25.7 6.8 60 137-198 30-92 (114)
166 PTZ00187 succinyl-CoA syntheta 65.8 20 0.00044 31.7 6.3 67 30-101 196-264 (317)
167 COG0777 AccD Acetyl-CoA carbox 62.0 37 0.0008 29.6 7.0 118 6-131 82-236 (294)
168 COG0757 AroQ 3-dehydroquinate 61.1 27 0.00059 27.3 5.4 46 47-97 55-100 (146)
169 PF13607 Succ_CoA_lig: Succiny 60.9 24 0.00051 27.3 5.2 61 31-99 29-91 (138)
170 TIGR02886 spore_II_AA anti-sig 56.7 19 0.00041 25.7 3.9 36 31-66 9-44 (106)
171 KOG3877 NADH:ubiquinone oxidor 56.2 24 0.00051 31.2 4.9 45 30-75 70-117 (393)
172 TIGR00377 ant_ant_sig anti-ant 56.2 68 0.0015 22.6 7.3 36 31-66 13-48 (108)
173 COG0074 SucD Succinyl-CoA synt 53.4 45 0.00098 29.2 6.2 79 32-124 174-253 (293)
174 PF02601 Exonuc_VII_L: Exonucl 53.1 63 0.0014 28.1 7.3 88 31-122 42-136 (319)
175 PLN02727 NAD kinase 52.6 66 0.0014 32.8 7.8 49 61-109 311-361 (986)
176 PRK06091 membrane protein FdrA 49.7 44 0.00096 31.9 6.0 70 32-103 222-293 (555)
177 cd01455 vWA_F11C1-5a_type Von 48.4 1.2E+02 0.0025 25.0 7.6 74 23-99 75-152 (191)
178 COG1512 Beta-propeller domains 46.7 33 0.00071 29.8 4.3 56 29-84 32-89 (271)
179 COG1366 SpoIIAA Anti-anti-sigm 44.3 34 0.00074 25.1 3.6 41 32-74 15-55 (117)
180 PF00549 Ligase_CoA: CoA-ligas 44.2 65 0.0014 25.4 5.3 56 47-102 60-121 (153)
181 PF03808 Glyco_tran_WecB: Glyc 42.4 1.7E+02 0.0037 23.1 7.9 81 9-102 27-114 (172)
182 COG3904 Predicted periplasmic 42.3 98 0.0021 26.1 6.2 54 37-94 54-107 (245)
183 PRK13015 3-dehydroquinate dehy 42.2 44 0.00095 26.3 4.0 48 46-98 55-102 (146)
184 PRK05395 3-dehydroquinate dehy 41.7 52 0.0011 25.9 4.3 47 46-97 55-101 (146)
185 KOG3093 5-formyltetrahydrofola 41.3 36 0.00079 27.9 3.5 45 45-89 31-75 (200)
186 PF00681 Plectin: Plectin repe 41.1 21 0.00046 21.9 1.7 18 175-192 18-35 (45)
187 PF09862 DUF2089: Protein of u 41.0 82 0.0018 23.7 5.1 54 133-187 48-111 (113)
188 smart00250 PLEC Plectin repeat 39.9 19 0.00041 21.2 1.3 18 176-193 19-36 (38)
189 TIGR01088 aroQ 3-dehydroquinat 39.3 62 0.0013 25.3 4.4 47 46-97 53-99 (141)
190 cd00466 DHQase_II Dehydroquina 39.3 55 0.0012 25.5 4.1 47 46-97 53-99 (140)
191 cd07043 STAS_anti-anti-sigma_f 39.0 1.2E+02 0.0027 20.5 6.9 80 31-111 9-90 (99)
192 PRK13170 hisH imidazole glycer 38.9 27 0.00058 28.3 2.5 29 71-99 45-80 (196)
193 PF01740 STAS: STAS domain; I 38.4 1.5E+02 0.0032 21.2 6.3 78 32-109 11-98 (117)
194 TIGR00661 MJ1255 conserved hyp 38.4 54 0.0012 28.4 4.5 35 64-99 2-37 (321)
195 PF01220 DHquinase_II: Dehydro 38.2 74 0.0016 24.8 4.7 48 46-98 54-101 (140)
196 cd07041 STAS_RsbR_RsbS_like Su 37.7 1.5E+02 0.0032 21.0 7.0 80 32-111 12-93 (109)
197 TIGR02717 AcCoA-syn-alpha acet 37.6 94 0.002 28.7 6.1 64 32-103 179-244 (447)
198 TIGR01019 sucCoAalpha succinyl 36.0 1.2E+02 0.0025 26.5 6.2 63 32-101 172-237 (286)
199 TIGR02364 dha_pts dihydroxyace 35.9 1.9E+02 0.0041 21.8 6.9 69 23-94 18-91 (125)
200 PRK00286 xseA exodeoxyribonucl 35.9 1.9E+02 0.004 26.5 7.8 85 32-123 164-254 (438)
201 cd01026 TOPRIM_OLD TOPRIM_OLD: 35.8 1.1E+02 0.0023 21.6 5.1 69 28-103 1-69 (97)
202 KOG3569 RAS signaling inhibito 35.1 40 0.00087 30.6 3.1 67 2-73 91-158 (425)
203 TIGR00282 metallophosphoestera 34.5 99 0.0021 26.7 5.4 65 32-96 2-66 (266)
204 PF06972 DUF1296: Protein of u 34.0 76 0.0016 21.1 3.5 34 153-187 7-41 (60)
205 COG0779 Uncharacterized protei 33.6 99 0.0022 24.4 4.8 37 38-74 47-85 (153)
206 PLN02522 ATP citrate (pro-S)-l 31.2 1.4E+02 0.0031 29.0 6.3 67 30-101 194-262 (608)
207 PRK14635 hypothetical protein; 31.0 97 0.0021 24.5 4.5 36 39-74 49-85 (162)
208 PF14538 Raptor_N: Raptor N-te 30.7 1.3E+02 0.0029 23.6 5.2 65 40-107 70-150 (154)
209 TIGR00237 xseA exodeoxyribonuc 30.7 3.4E+02 0.0074 24.9 8.6 85 32-122 158-248 (432)
210 PHA02097 hypothetical protein 30.5 45 0.00097 21.5 1.9 16 60-75 8-23 (59)
211 cd06844 STAS Sulphate Transpor 30.3 83 0.0018 22.1 3.7 38 31-68 9-46 (100)
212 PRK02866 cyanate hydratase; Va 30.1 1E+02 0.0022 24.3 4.3 32 156-187 22-53 (147)
213 PF03610 EIIA-man: PTS system 29.4 2E+02 0.0044 20.8 5.8 89 11-104 4-96 (116)
214 PF01381 HTH_3: Helix-turn-hel 29.0 1E+02 0.0022 18.8 3.6 32 156-187 13-44 (55)
215 PRK05678 succinyl-CoA syntheta 28.9 2E+02 0.0043 25.1 6.4 65 32-101 174-239 (291)
216 PRK14637 hypothetical protein; 28.0 1.2E+02 0.0025 23.9 4.4 56 40-96 49-105 (151)
217 PF07819 PGAP1: PGAP1-like pro 27.2 1E+02 0.0022 25.5 4.2 22 5-28 4-27 (225)
218 cd01452 VWA_26S_proteasome_sub 27.2 2.2E+02 0.0047 23.2 6.0 40 61-100 107-147 (187)
219 TIGR03070 couple_hipB transcri 27.2 1.5E+02 0.0033 17.9 4.2 32 155-186 18-49 (58)
220 COG3093 VapI Plasmid maintenan 26.8 96 0.0021 23.0 3.4 34 155-188 26-59 (104)
221 PRK14642 hypothetical protein; 26.6 1.2E+02 0.0026 25.1 4.3 53 40-94 52-105 (197)
222 cd06547 GH85_ENGase Endo-beta- 26.0 2.2E+02 0.0049 25.3 6.3 74 5-89 59-132 (339)
223 PRK14640 hypothetical protein; 25.7 1.4E+02 0.0031 23.3 4.6 56 40-96 47-104 (152)
224 COG2072 TrkA Predicted flavopr 25.6 1.2E+02 0.0026 28.0 4.7 61 4-74 143-211 (443)
225 TIGR02675 tape_meas_nterm tape 25.5 1.9E+02 0.0042 19.7 4.6 29 154-183 46-74 (75)
226 PRK14481 dihydroxyacetone kina 25.2 3.2E+02 0.0069 24.5 7.1 57 44-100 234-296 (331)
227 KOG0061 Transporter, ABC super 25.1 1.5E+02 0.0033 28.6 5.4 89 18-112 175-267 (613)
228 COG1160 Predicted GTPases [Gen 25.0 2E+02 0.0044 26.8 5.9 39 59-97 82-120 (444)
229 PRK14483 DhaKLM operon coactiv 24.9 3.3E+02 0.0071 24.4 7.1 56 45-100 235-296 (329)
230 PHA02127 hypothetical protein 23.8 33 0.00073 21.7 0.5 6 1-6 33-38 (57)
231 PRK09726 antitoxin HipB; Provi 23.6 2.2E+02 0.0047 19.7 4.8 64 136-199 9-76 (88)
232 TIGR00673 cynS cyanate hydrata 22.8 1.1E+02 0.0023 24.2 3.3 33 155-187 24-56 (150)
233 PRK14633 hypothetical protein; 22.5 1.8E+02 0.0039 22.7 4.6 54 40-94 44-99 (150)
234 KOG1283 Serine carboxypeptidas 22.5 1.8E+02 0.004 26.3 4.9 62 50-111 110-183 (414)
235 PRK14643 hypothetical protein; 22.5 1.8E+02 0.0038 23.2 4.5 58 38-96 52-111 (164)
236 TIGR00566 trpG_papA glutamine 21.8 89 0.0019 25.0 2.8 31 70-100 50-83 (188)
237 cd07382 MPP_DR1281 Deinococcus 21.8 2.4E+02 0.0051 24.1 5.5 64 32-96 1-65 (255)
238 cd02787 MopB_CT_ydeP The MopB_ 21.7 55 0.0012 23.6 1.4 17 176-192 32-48 (112)
239 CHL00188 hisH imidazole glycer 21.4 1.2E+02 0.0026 25.0 3.5 30 70-99 45-84 (210)
240 PRK14639 hypothetical protein; 21.2 2.1E+02 0.0045 22.1 4.6 57 39-96 37-95 (140)
241 PF02310 B12-binding: B12 bind 21.1 3.1E+02 0.0068 19.4 6.6 68 32-108 30-98 (121)
242 PF03855 M-factor: M-factor; 21.0 39 0.00084 20.4 0.3 7 6-12 34-40 (44)
243 PRK14641 hypothetical protein; 20.8 2E+02 0.0042 23.2 4.5 54 40-94 50-109 (173)
244 PRK14647 hypothetical protein; 20.8 1.9E+02 0.0042 22.7 4.4 54 40-95 49-105 (159)
245 PRK14630 hypothetical protein; 20.7 2.1E+02 0.0045 22.2 4.5 57 39-96 48-104 (143)
246 PRK14646 hypothetical protein; 20.5 2E+02 0.0043 22.6 4.4 55 40-95 50-106 (155)
247 PRK14638 hypothetical protein; 20.5 2.1E+02 0.0045 22.4 4.5 58 38-96 48-107 (150)
248 TIGR02363 dhaK1 dihydroxyaceto 20.5 4.6E+02 0.0099 23.4 7.1 56 45-100 236-297 (329)
249 PF14566 PTPlike_phytase: Inos 20.4 3.4E+02 0.0073 20.9 5.7 58 24-86 82-149 (149)
250 PF00216 Bac_DNA_binding: Bact 20.4 1.2E+02 0.0025 20.8 2.8 39 151-190 3-41 (90)
251 PF07553 Lipoprotein_Ltp: Host 20.3 1.7E+02 0.0036 18.4 3.2 30 155-184 10-41 (48)
252 PRK10753 transcriptional regul 20.2 1.3E+02 0.0027 21.3 3.0 36 152-188 4-39 (90)
No 1
>CHL00028 clpP ATP-dependent Clp protease proteolytic subunit
Probab=100.00 E-value=7.1e-57 Score=370.50 Aligned_cols=197 Identities=45% Similarity=0.805 Sum_probs=192.2
Q ss_pred CCCCCCeeeeecCCCCCCchhhhHHhhccCcEEEEccccCcchHHHHHHHHHhhccCCCCCceEEEEeCCCCChhHHHHH
Q 028125 2 MPIGTPKVLYRTPGEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAI 81 (213)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iI~i~G~I~~~~~~~l~~~l~~l~~~~~~~~I~l~INSpGG~v~~~~~I 81 (213)
||+|+|++|+..++++.++|.|++++|+++|+|||+|+||++.++.++++|++|+.+++.++|+|+||||||+|++|++|
T Consensus 1 m~~~~p~~~~~~~~~~~~~~~d~~~~l~~~Riifl~~~i~~~~a~~ii~~ll~L~~~~~~~~I~l~INSpGG~v~~g~aI 80 (200)
T CHL00028 1 MPIGVPKVPFRLPGEEDATWVDLYNRLYRERLLFLGQEVDDEIANQLIGLMVYLSIEDDTKDLYLFINSPGGSVISGLAI 80 (200)
T ss_pred CCCCCceeeeecCCCCCcccccHHHHHhcCCEEEECCeecHHHHHHHHHHHHHHhccCCCCCEEEEEeCCCcchhhHHHH
Confidence 89999999999999999999999999999999999999999999999999999999988999999999999999999999
Q ss_pred HHHHHhcCCCeEEEEccccchHHHHHHhcCCCCcEeeccCCeEEEeCCCcc-CCCChHHHHHHHHHHHHHHHHHHHHHHH
Q 028125 82 YDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGA-ARGQADDIRNEADELLRVRDYIFKELSR 160 (213)
Q Consensus 82 ~~~i~~~~~~v~t~~~G~aaSaa~~I~~ag~~~~r~~~p~s~i~iH~p~~~-~~G~~~d~~~~~~~l~~~~~~~~~~~a~ 160 (213)
||+|+.++.||+|+|.|.|+|+|++|+++|++++|++.|||++|+|||+++ ..|+++|+..++++++++++.+.++|++
T Consensus 81 yd~m~~~~~~V~Tv~~G~AaS~aslIl~aG~kg~R~~~p~s~imiHqp~~~~~~G~a~di~~~a~~l~~~~~~~~~~ya~ 160 (200)
T CHL00028 81 YDTMQFVKPDVHTICLGLAASMASFILAGGEITKRLAFPHARVMIHQPASSFYEGQASEFVLEAEELLKLRETITRVYAQ 160 (200)
T ss_pred HHHHHhcCCCEEEEEEEehHHHHHHHHhCCCCCCEEecCCCeEEEecCccCcCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999988899999999999999988 8999999999999999999999999999
Q ss_pred HhCCCHHHHHHHhcCCceeCHHHHHHcCCceEecCCcc
Q 028125 161 KTGQPFEKITKDLSRIKRFGSQEALEYGLIDRIIRPPR 198 (213)
Q Consensus 161 ~tg~~~~~i~~~~~~~~~~sa~EA~~~GLiD~I~~~~~ 198 (213)
+||++.+++.+++++++||||+||++|||||+|+++..
T Consensus 161 ~Tg~~~e~i~~~~~r~~~lta~EA~eyGliD~I~~~~~ 198 (200)
T CHL00028 161 RTGKPLWVISEDMERDVFMSATEAKAYGIVDLVAVNNE 198 (200)
T ss_pred HHCcCHHHHHHHhhcCccCCHHHHHHcCCCcEEeecCc
Confidence 99999999999999999999999999999999998653
No 2
>PRK12552 ATP-dependent Clp protease-like protein; Reviewed
Probab=100.00 E-value=4.1e-55 Score=363.19 Aligned_cols=199 Identities=38% Similarity=0.579 Sum_probs=192.7
Q ss_pred CCCCCCeeeeecCCCCCCchhhhHHhhccCcEEEEccccCcc----------hHHHHHHHHHhhccCCCCCceEEEEeCC
Q 028125 2 MPIGTPKVLYRTPGEGSWQWVDLWNALYRERVIFIGQNIDEE----------FSNQILATMLYLDSVDDSKRVYMYINGP 71 (213)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iI~i~G~I~~~----------~~~~l~~~l~~l~~~~~~~~I~l~INSp 71 (213)
||+|+|++||..+++..++|.|++++|+++|+|||+|+|+++ .++.++++|++|+.+++.++|+||||||
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~d~~~~Ll~~Rii~l~~~i~~~~~~~~~~~~~~a~~iiaqLl~L~~~~~~k~I~lyINSp 80 (222)
T PRK12552 1 SPIMAVQAPYYGDAVMRTPPPDLPSLLLKERIVYLGLPLFSDDDAKRQVGMDVTELIIAQLLYLEFDDPEKPIYFYINST 80 (222)
T ss_pred CCCCcccccccCCCCCCCCCcCHHHHHhhCCEEEECCeeccccccccchhHhHHHHHHHHHHHHhccCCCCCEEEEEeCC
Confidence 899999999999999999999999999999999999999999 9999999999999998899999999999
Q ss_pred CCC---------hhHHHHHHHHHHhcCCCeEEEEccccchHHHHHHhcCCCCcEeeccCCeEEEeCCCccCCCChHHHHH
Q 028125 72 GGD---------VTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRN 142 (213)
Q Consensus 72 GG~---------v~~~~~I~~~i~~~~~~v~t~~~G~aaSaa~~I~~ag~~~~r~~~p~s~i~iH~p~~~~~G~~~d~~~ 142 (213)
||+ ++++++|||+|+.++.+|+|+|.|.|||+|++|++||++++|++.|||++|+|||+++..|++.|++.
T Consensus 81 GGsv~~G~~iG~v~~glaIyD~m~~ik~~V~Tv~~G~AaS~AslIl~aG~kg~R~alpns~iMIHqP~~~~~G~A~di~~ 160 (222)
T PRK12552 81 GTSWYTGDAIGFETEAFAICDTMRYIKPPVHTICIGQAMGTAAMILSAGTKGQRASLPHATIVLHQPRSGARGQATDIQI 160 (222)
T ss_pred CCCccccccccccccHHHHHHHHHhcCCCeEEEEEeehhhHHHHHHhCCCCCceecCCCcEEEeccCCcccccCHHHHHH
Confidence 988 77889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhcCCceeCHHHHHHcCCceEecCCcccc
Q 028125 143 EADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRIIRPPRIK 200 (213)
Q Consensus 143 ~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~~~~~~sa~EA~~~GLiD~I~~~~~~~ 200 (213)
+++++.++++.+.++|+++||++.+++.+++++++||||+||++|||||+|+++.+..
T Consensus 161 ~a~el~~~r~~l~~iya~~TG~~~e~I~~d~~rd~wmsA~EA~eyGliD~Ii~~~~~~ 218 (222)
T PRK12552 161 RAKEVLHNKRTMLEILSRNTGQTVEKLSKDTDRMFYLTPQEAKEYGLIDRVLESRKDL 218 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHhcCCCcCCHHHHHHcCCCcEEeccCCcC
Confidence 9999999999999999999999999999999999999999999999999999875543
No 3
>KOG0840 consensus ATP-dependent Clp protease, proteolytic subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.4e-55 Score=363.39 Aligned_cols=212 Identities=45% Similarity=0.758 Sum_probs=202.0
Q ss_pred CCCCCCCeeeeecCCCCCCchhhhHHhhccCcEEEEccccCcchHHHHHHHHHhhccCCCCCceEEEEeCCCCChhHHHH
Q 028125 1 MMPIGTPKVLYRTPGEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLA 80 (213)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iI~i~G~I~~~~~~~l~~~l~~l~~~~~~~~I~l~INSpGG~v~~~~~ 80 (213)
++|+++|.+|+..+|+..+.|+|++++||++|||||.++||++.++.+++||++|+.+++.++|++|||||||+++++++
T Consensus 62 ~~~~~~p~~~~~~~~rG~~~~~Di~s~LlreRIi~lg~~Idd~va~~viaqlL~Ld~ed~~K~I~lyINSPGG~vtaglA 141 (275)
T KOG0840|consen 62 RAPILVPRFPIESPGRGRERPYDIYSRLLRERIVFLGQPIDDDVANLVIAQLLYLDSEDPKKPIYLYINSPGGSVTAGLA 141 (275)
T ss_pred cccccCCcceeeccccCCCCcccHHHHHHHhheeeeCCcCcHHHHHHHHHHHHHhhccCCCCCeEEEEeCCCCccchhhh
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCeEEEEccccchHHHHHHhcCCCCcEeeccCCeEEEeCCCccCCCChHHHHHHHHHHHHHHHHHHHHHHH
Q 028125 81 IYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSR 160 (213)
Q Consensus 81 I~~~i~~~~~~v~t~~~G~aaSaa~~I~~ag~~~~r~~~p~s~i~iH~p~~~~~G~~~d~~~~~~~l~~~~~~~~~~~a~ 160 (213)
|||.|+.++.||.|+|.|.|||+|++++++|.||+|++.|||++|+|||.++..|++.|+..+++++.+.++.+.++|++
T Consensus 142 IYDtMq~ik~~V~Tic~G~Aas~aalLLaaG~KG~R~alPnsriMIhQP~gga~Gqa~Di~i~akE~~~~k~~l~~i~a~ 221 (275)
T KOG0840|consen 142 IYDTMQYIKPDVSTICVGLAASMAALLLAAGAKGKRYALPNSRIMIHQPSGGAGGQATDIVIQAKELMRIKEYLNEIYAK 221 (275)
T ss_pred HHHHHHhhCCCceeeehhhHHhHHHHHHhcCCCcceeecCCceeEEeccCCCcCccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCHHHHHHHhcCCceeCHHHHHHcCCceEecC-CccccccCCccccCCCC
Q 028125 161 KTGQPFEKITKDLSRIKRFGSQEALEYGLIDRIIR-PPRIKEDMPRKDAGTGL 212 (213)
Q Consensus 161 ~tg~~~~~i~~~~~~~~~~sa~EA~~~GLiD~I~~-~~~~~~~~~~~~~~~~~ 212 (213)
+||++.++|.+.+++|+||+|+||++|||||.|++ +.+.+..-++.+.+++.
T Consensus 222 ~Tgq~~e~i~~d~dRd~fmsa~EA~eyGliD~v~~~p~~~~~~~~~~~e~~~~ 274 (275)
T KOG0840|consen 222 HTGQPLEVIEKDMDRDRFMSAEEAKEYGLIDKVIDHPPETRVDDGTLVESAMK 274 (275)
T ss_pred hcCCcHHHHHhhhcccccCCHHHHHHhcchhhhhcCCcccccccchhhhcccC
Confidence 99999999999999999999999999999999998 45555566666555543
No 4
>PRK14513 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=100.00 E-value=8.1e-53 Score=345.94 Aligned_cols=196 Identities=39% Similarity=0.684 Sum_probs=183.0
Q ss_pred CCCCCCeeeeecCCCCC-CchhhhHHhhccCcEEEEccccCcchHHHHHHHHHhhccCCCCCceEEEEeCCCCChhHHHH
Q 028125 2 MPIGTPKVLYRTPGEGS-WQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLA 80 (213)
Q Consensus 2 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~iI~i~G~I~~~~~~~l~~~l~~l~~~~~~~~I~l~INSpGG~v~~~~~ 80 (213)
||+ +|+ .++.... ..|.|++++|+++|+||++++|+++.++.++++|++|+.+++.++|+|+||||||+|++|++
T Consensus 1 ~~~-~p~---~~~~~~~~~~~~d~~~~l~~~Riifl~~~i~~~~a~~ii~~Ll~L~~~~~~~~I~l~INSpGG~v~~Gla 76 (201)
T PRK14513 1 MSV-IPY---VIEQTGRGERMYDIYSRLLKDRIIFVGTPIESQMANTIVAQLLLLDSQNPEQEIQMYINCPGGEVYAGLA 76 (201)
T ss_pred CCC-CCc---ccccCCCCccccCHHHHHhhCCEEEECCEEcHHHHHHHHHHHHHhhccCCCCCEEEEEECCCCchhhHHH
Confidence 564 444 3443333 45899999999999999999999999999999999999988889999999999999999999
Q ss_pred HHHHHHhcCCCeEEEEccccchHHHHHHhcCCCCcEeeccCCeEEEeCCCccCCCChHHHHHHHHHHHHHHHHHHHHHHH
Q 028125 81 IYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSR 160 (213)
Q Consensus 81 I~~~i~~~~~~v~t~~~G~aaSaa~~I~~ag~~~~r~~~p~s~i~iH~p~~~~~G~~~d~~~~~~~l~~~~~~~~~~~a~ 160 (213)
|||+|+.++.||+|+|.|.|||+|++|++||++++|++.|||++|+|+|+++..|++.|+..++++++.+++.+.++|++
T Consensus 77 Iyd~m~~~~~~V~Ti~~G~AaS~As~il~aG~kgkR~~~pna~iMIHqp~~~~~G~a~di~~~a~el~~~~~~l~~iya~ 156 (201)
T PRK14513 77 IYDTMRYIKAPVSTICVGIAMSMGSVLLMAGDKGKRMALPNSRIMIHQGSAGFRGNTPDLEVQAKEVLFLRDTLVDIYHR 156 (201)
T ss_pred HHHHHHhcCCCEEEEEEeeehhhHHHHHhcCCCCcEEecCCeEEEEecCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCHHHHHHHhcCCceeCHHHHHHcCCceEecCCccccc
Q 028125 161 KTGQPFEKITKDLSRIKRFGSQEALEYGLIDRIIRPPRIKE 201 (213)
Q Consensus 161 ~tg~~~~~i~~~~~~~~~~sa~EA~~~GLiD~I~~~~~~~~ 201 (213)
+||++.+++.+++++++||||+||++|||||+|+++.++|+
T Consensus 157 ~Tg~~~~~I~~~~~rd~~msa~EA~eyGliD~I~~~~~~~~ 197 (201)
T PRK14513 157 HTDLPHEKLLRDMERDYFMSPEEAKAYGLIDSVIEPTRVKR 197 (201)
T ss_pred HHCcCHHHHHHHhccCcccCHHHHHHcCCCcEEeccCCCCC
Confidence 99999999999999999999999999999999999877664
No 5
>COG0740 ClpP Protease subunit of ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=100.00 E-value=1e-52 Score=341.93 Aligned_cols=183 Identities=43% Similarity=0.746 Sum_probs=177.4
Q ss_pred CchhhhHHhhccCcEEEEccccCcchHHHHHHHHHhhccCCCCCceEEEEeCCCCChhHHHHHHHHHHhcCCCeEEEEcc
Q 028125 19 WQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVG 98 (213)
Q Consensus 19 ~~~~~~~~~~~~~~iI~i~G~I~~~~~~~l~~~l~~l~~~~~~~~I~l~INSpGG~v~~~~~I~~~i~~~~~~v~t~~~G 98 (213)
..++|++++++++|+|||.|+|+++.++.++++|.+|+.+++.++|+||||||||+|++|++|||+|+.++.||+|+|.|
T Consensus 15 ~~~~di~s~llk~riI~l~g~I~~~~a~~i~aqll~Lea~~~~k~I~lyINSpGG~V~aG~AIydtm~~ik~~V~ti~~G 94 (200)
T COG0740 15 ERSYDIYSRLLKERIIFLGGEIEDHMANLIVAQLLFLEAEDPDKDIYLYINSPGGSVTAGLAIYDTMQFIKPPVSTICMG 94 (200)
T ss_pred CChhhHHHHhhhccEEEEeeeechHHHHHHHHHHHHHHhcCCCCCeEEEEeCCCcccchhHHHHHHHHhcCCCeEEEEec
Confidence 34489999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchHHHHHHhcCCCCcEeeccCCeEEEeCCCccCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhcCCce
Q 028125 99 FAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKR 178 (213)
Q Consensus 99 ~aaSaa~~I~~ag~~~~r~~~p~s~i~iH~p~~~~~G~~~d~~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~~~~~ 178 (213)
.|||||++|++||++++|+++|||++|+|||+++..|+++|++.+++++.++++.+.++|+++||++++++.+++++|+|
T Consensus 95 ~AaSmgs~l~~aG~~g~r~~lPnsrimIHqP~gg~~G~a~Di~i~A~ei~~~~~~l~~i~a~~TGq~~e~i~~d~drd~~ 174 (200)
T COG0740 95 QAASMGSVLLMAGDKGKRFALPNARIMIHQPSGGAQGQASDIEIHAREILKIKERLNRIYAEHTGQTLEKIEKDTDRDTW 174 (200)
T ss_pred HHHhHHHHHHhcCCCCCceeCCCceEEEecCCccCccCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHhhccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCHHHHHHcCCceEecCCccccc
Q 028125 179 FGSQEALEYGLIDRIIRPPRIKE 201 (213)
Q Consensus 179 ~sa~EA~~~GLiD~I~~~~~~~~ 201 (213)
|||+||++|||||.|++..+..+
T Consensus 175 msa~eA~~yGLiD~V~~~~~~~~ 197 (200)
T COG0740 175 MSAEEAKEYGLIDKVIESREAAA 197 (200)
T ss_pred CCHHHHHHcCCcceecccccccc
Confidence 99999999999999999877554
No 6
>PRK00277 clpP ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=100.00 E-value=2.4e-51 Score=338.42 Aligned_cols=197 Identities=42% Similarity=0.698 Sum_probs=189.3
Q ss_pred CCCCCCeeeeec-CCCCCCchhhhHHhhccCcEEEEccccCcchHHHHHHHHHhhccCCCCCceEEEEeCCCCChhHHHH
Q 028125 2 MPIGTPKVLYRT-PGEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLA 80 (213)
Q Consensus 2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~iI~i~G~I~~~~~~~l~~~l~~l~~~~~~~~I~l~INSpGG~v~~~~~ 80 (213)
||||+|++|+.+ ++++...|++++++++++|+|||+|+|++++++.++++|.+++.+++.++|+|+||||||+++++++
T Consensus 1 ~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~rii~i~g~I~~~~~~~i~~~L~~l~~~~~~~~I~l~InSpGG~v~~g~~ 80 (200)
T PRK00277 1 MPIMMNLVPMVIEQTSRGERSYDIYSRLLKERIIFLGGEVEDHMANLIVAQLLFLEAEDPDKDIYLYINSPGGSVTAGLA 80 (200)
T ss_pred CCCCCCCCceeeccCCCCcccccHHHHhhcCcEEEECCEECHHHHHHHHHHHHHhhccCCCCCEEEEEECCCCcHHHHHH
Confidence 899999999987 6767788999999999999999999999999999999999999888889999999999999999999
Q ss_pred HHHHHHhcCCCeEEEEccccchHHHHHHhcCCCCcEeeccCCeEEEeCCCccCCCChHHHHHHHHHHHHHHHHHHHHHHH
Q 028125 81 IYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSR 160 (213)
Q Consensus 81 I~~~i~~~~~~v~t~~~G~aaSaa~~I~~ag~~~~r~~~p~s~i~iH~p~~~~~G~~~d~~~~~~~l~~~~~~~~~~~a~ 160 (213)
|||+|+.++.||+|+|.|.|+|+|++|+++|++++|++.|+|++|+|+|+++..|++.|++.++++++++++.+.++|++
T Consensus 81 I~d~i~~~~~~v~t~~~G~aaS~a~~I~~ag~~~~r~~~p~s~imih~p~~~~~G~a~di~~~a~~l~~~~~~~~~~~a~ 160 (200)
T PRK00277 81 IYDTMQFIKPDVSTICIGQAASMGAFLLAAGAKGKRFALPNSRIMIHQPLGGFQGQATDIEIHAREILKLKKRLNEILAE 160 (200)
T ss_pred HHHHHHhcCCCEEEEEEeEeccHHHHHHhcCCCCCEEEcCCceEEeccCcccccCChhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999888999999999999999988999999999999999999999999999
Q ss_pred HhCCCHHHHHHHhcCCceeCHHHHHHcCCceEecCCcc
Q 028125 161 KTGQPFEKITKDLSRIKRFGSQEALEYGLIDRIIRPPR 198 (213)
Q Consensus 161 ~tg~~~~~i~~~~~~~~~~sa~EA~~~GLiD~I~~~~~ 198 (213)
+||++++++++++++++||||+||+++||||+|++..+
T Consensus 161 ~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~Ii~~~~ 198 (200)
T PRK00277 161 HTGQPLEKIEKDTDRDNFMSAEEAKEYGLIDEVLTKRK 198 (200)
T ss_pred HHCcCHHHHHHHhhCCccccHHHHHHcCCccEEeecCC
Confidence 99999999999999999999999999999999998743
No 7
>PRK12551 ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=100.00 E-value=2.8e-51 Score=336.22 Aligned_cols=183 Identities=45% Similarity=0.758 Sum_probs=177.6
Q ss_pred CchhhhHHhhccCcEEEEccccCcchHHHHHHHHHhhccCCCCCceEEEEeCCCCChhHHHHHHHHHHhcCCCeEEEEcc
Q 028125 19 WQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVG 98 (213)
Q Consensus 19 ~~~~~~~~~~~~~~iI~i~G~I~~~~~~~l~~~l~~l~~~~~~~~I~l~INSpGG~v~~~~~I~~~i~~~~~~v~t~~~G 98 (213)
+.|.|++++|+++|+||++|+|++++++.++++|++|+.+++.++|+|+||||||+|++|++|||+|+.++.||+|+|.|
T Consensus 13 ~~~~d~~~~l~~~Riifl~~~i~~~~a~~ii~~Ll~l~~~~~~~~I~l~INSpGG~v~~g~aIyd~m~~~~~~V~t~~~G 92 (196)
T PRK12551 13 ERAFDIYSRLLRERIIFLGEPVTSDSANRIVAQLLFLEAEDPEKDIYLYINSPGGSVYDGLGIFDTMQHVKPDVHTVCVG 92 (196)
T ss_pred ccccCHHHHHhcCcEEEECCeecHHHHHHHHHHHHHhhccCCCCCEEEEEeCCCcchhhHHHHHHHHHhcCCCEEEEEEE
Confidence 57899999999999999999999999999999999999988889999999999999999999999999999999999999
Q ss_pred ccchHHHHHHhcCCCCcEeeccCCeEEEeCCCccCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhcCCce
Q 028125 99 FAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKR 178 (213)
Q Consensus 99 ~aaSaa~~I~~ag~~~~r~~~p~s~i~iH~p~~~~~G~~~d~~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~~~~~ 178 (213)
.|||+|++|+++|++++|++.|||++|+|||+++..|++.|++.++++++++++.+.++|+++||++.+++.+++++++|
T Consensus 93 ~AaS~AslIl~aG~~~~R~~~p~a~iMIHqP~~~~~G~a~di~~~a~~l~~~~~~~~~~ya~~tG~~~~~i~~~~~rd~~ 172 (196)
T PRK12551 93 LAASMGAFLLCAGAKGKRSSLQHSRIMIHQPLGGARGQASDIRIQADEILFLKERLNTELSERTGQPLERIQEDTDRDFF 172 (196)
T ss_pred EehhHHHHHHhCCCCCceecCCCCEEEEecCCcccCCCcchHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhhcCcC
Confidence 99999999999999999999999999999999989999999999999999999999999999999999999999999999
Q ss_pred eCHHHHHHcCCceEecCCccccc
Q 028125 179 FGSQEALEYGLIDRIIRPPRIKE 201 (213)
Q Consensus 179 ~sa~EA~~~GLiD~I~~~~~~~~ 201 (213)
|||+||++|||||+|.+.+++++
T Consensus 173 msa~EA~eyGliD~I~~~~~~~~ 195 (196)
T PRK12551 173 MSPSEAVEYGLIDLVIDKRPVKA 195 (196)
T ss_pred CCHHHHHHcCCCcEEeccCCCCC
Confidence 99999999999999999876654
No 8
>PRK14514 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=100.00 E-value=3.3e-51 Score=340.39 Aligned_cols=190 Identities=41% Similarity=0.676 Sum_probs=179.2
Q ss_pred CCeeeeecCCCCCCchhhhHHhhccCcEEEEccccCcchHHHHHHHHHhhccCCCCCceEEEEeCCCCChhHHHHHHHHH
Q 028125 6 TPKVLYRTPGEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTM 85 (213)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iI~i~G~I~~~~~~~l~~~l~~l~~~~~~~~I~l~INSpGG~v~~~~~I~~~i 85 (213)
+|++..++. +...|+|++++|+++|+|||+|+||+.+++.++++|++|+.+++.++|+|+||||||+|++|++|||+|
T Consensus 31 ~p~~~~~~~--~~~~~~d~~~~ll~~Riifl~~~Idd~~a~~i~aqLl~L~~~~~~~~I~lyINSpGGsv~aGlaIyd~m 108 (221)
T PRK14514 31 NPYILEERQ--LNVTQMDVFSRLMMDRIIFLGTQIDDYTANTIQAQLLYLDSVDPGKDISIYINSPGGSVYAGLGIYDTM 108 (221)
T ss_pred cceeeeeCC--CCCcccCHHHHHhhCcEEEECCEEcHHHHHHHHHHHHHHhccCCCCCEEEEEECCCcchhhHHHHHHHH
Confidence 565554332 225789999999999999999999999999999999999998888999999999999999999999999
Q ss_pred HhcCCCeEEEEccccchHHHHHHhcCCCCcEeeccCCeEEEeCCCccCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 028125 86 QSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQP 165 (213)
Q Consensus 86 ~~~~~~v~t~~~G~aaSaa~~I~~ag~~~~r~~~p~s~i~iH~p~~~~~G~~~d~~~~~~~l~~~~~~~~~~~a~~tg~~ 165 (213)
+.++.||+|+|.|.|||+|++|+++|++++|++.|||++|+|||+++..|+++|++.+++++.++++.+.++|+++||++
T Consensus 109 ~~~~~~V~tv~~G~AAS~AslIl~aG~~gkR~~~pna~iMiHqP~~~~~G~a~di~i~a~el~~~~~~i~~iya~~TG~~ 188 (221)
T PRK14514 109 QFISSDVATICTGMAASMASVLLVAGTKGKRSALPHSRVMIHQPLGGAQGQASDIEITAREIQKLKKELYTIIADHSGTP 188 (221)
T ss_pred HhcCCCEEEEEEEEehhHHHHHHhcCCCCceeeCCCCEEEeccCCcccCCCcchHHHHHHHHHHHHHHHHHHHHHHHCcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCceeCHHHHHHcCCceEecCCc
Q 028125 166 FEKITKDLSRIKRFGSQEALEYGLIDRIIRPP 197 (213)
Q Consensus 166 ~~~i~~~~~~~~~~sa~EA~~~GLiD~I~~~~ 197 (213)
.+++.+++++++||||+||++|||||+|++..
T Consensus 189 ~e~I~~~~~rd~wmtA~EA~eyGliD~Vi~~~ 220 (221)
T PRK14514 189 FDKVWADSDRDYWMTAQEAKEYGMIDEVLIKK 220 (221)
T ss_pred HHHHHHHhhcCccCCHHHHHHcCCccEEeecC
Confidence 99999999999999999999999999999854
No 9
>TIGR00493 clpP ATP-dependent Clp protease, proteolytic subunit ClpP. This model for the proteolytic subunit ClpP has been rebuilt to a higher stringency. In every bacterial genome with the ClpXP machine, a ClpP protein will be found that scores with this model. In general, this ClpP member will be encoded adjacent to the clpX gene, as were all examples used in the seed alignment. A large fraction of genomes have one or more additional ClpP paralogs, sometimes encoded nearby and sometimes elsewhere. The stringency of the trusted cutoff used here excludes the more divergent ClpP paralogs from being called authentic ClpP by this model.
Probab=100.00 E-value=4.5e-48 Score=316.76 Aligned_cols=188 Identities=41% Similarity=0.726 Sum_probs=176.3
Q ss_pred CCeeeeecCCCCCCchhhhHHhhccCcEEEEccccCcchHHHHHHHHHhhccCCCCCceEEEEeCCCCChhHHHHHHHHH
Q 028125 6 TPKVLYRTPGEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTM 85 (213)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iI~i~G~I~~~~~~~l~~~l~~l~~~~~~~~I~l~INSpGG~v~~~~~I~~~i 85 (213)
+|++... .+ +...|.|++++++++|+||++|+|+++.++.++++|.+++.+++.++|+|+||||||+++++++|||.|
T Consensus 3 ~p~~~~~-~~-~~~~~~d~~~~l~~~riI~l~g~I~~~~~~~ii~~L~~l~~~~~~~~i~l~InSpGG~v~~g~~I~d~l 80 (191)
T TIGR00493 3 IPMVIEQ-TG-RGERSFDIYSRLLKERIIFLSGEVNDSVANLIVAQLLFLEAEDPEKDIYLYINSPGGSITAGLAIYDTM 80 (191)
T ss_pred CCccccc-CC-CCcccccHHHHHhcCeEEEEccEEChHHHHHHHHHHHHhhccCCCCCEEEEEECCCCCHHHHHHHHHHH
Confidence 6765332 22 225689999999999999999999999999999999999988888999999999999999999999999
Q ss_pred HhcCCCeEEEEccccchHHHHHHhcCCCCcEeeccCCeEEEeCCCccCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 028125 86 QSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQP 165 (213)
Q Consensus 86 ~~~~~~v~t~~~G~aaSaa~~I~~ag~~~~r~~~p~s~i~iH~p~~~~~G~~~d~~~~~~~l~~~~~~~~~~~a~~tg~~ 165 (213)
+.++.||+|+|.|.|+|+|++|+++|++++|++.|||++|+|+|+++..|+..|++.++++++++++.+.++|+++||++
T Consensus 81 ~~~~~~v~t~~~G~AaSaaslI~~aG~~~~r~~~p~s~imiH~p~~~~~G~a~d~~~~a~~l~~~~~~~~~~ya~~tg~~ 160 (191)
T TIGR00493 81 QFIKPDVSTICIGQAASMGAFLLSAGAKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQANEILRLKGLLNDILANHTGQS 160 (191)
T ss_pred HhcCCCEEEEEEEeeccHHHHHHhcCCCCcEEecCCceEEEecCcccccCCcchhHHHHHHHHHHHHHHHHHHHHHHCcC
Confidence 99999999999999999999999999988899999999999999988889999999999999999999999999999999
Q ss_pred HHHHHHHhcCCceeCHHHHHHcCCceEecC
Q 028125 166 FEKITKDLSRIKRFGSQEALEYGLIDRIIR 195 (213)
Q Consensus 166 ~~~i~~~~~~~~~~sa~EA~~~GLiD~I~~ 195 (213)
.+++++++++++||||+||++|||||+|++
T Consensus 161 ~~~i~~~~~~~~~lta~EA~~~GliD~ii~ 190 (191)
T TIGR00493 161 LEQIEKDTERDFFMSAEEAKEYGLIDSVLT 190 (191)
T ss_pred HHHHHHHhhCCccCcHHHHHHcCCccEEec
Confidence 999999999999999999999999999975
No 10
>PF00574 CLP_protease: Clp protease; InterPro: IPR001907 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase family S14 (ClpP endopeptidase family, clan SK). ClpP is an ATP-dependent protease that cleaves a number of proteins, such as casein and albumin []. It exists as a heterodimer of ATP-binding regulatory A and catalytic P subunits, both of which are required for effective levels of protease activity in the presence of ATP [], although the P subunit alone does possess some catalytic activity. This family of sequences represent the P subunit. Proteases highly similar to ClpP have been found to be encoded in the genome of bacteria, metazoa, some viruses and in the chloroplast of plants. A number of the proteins in this family are classified as non-peptidase homologues as they have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for catalytic activity. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2ZL3_L 2ZL0_F 2ZL2_M 2ZL4_C 1TG6_D 2F6I_D 3V5I_b 3V5E_M 3QWD_D 2DEO_A ....
Probab=100.00 E-value=3.5e-47 Score=308.87 Aligned_cols=179 Identities=39% Similarity=0.682 Sum_probs=169.5
Q ss_pred CchhhhHHhhccCcEEEEccccCcchHHHHHHHHHhhccCCCCCceEEEEeCCCCChhHHHHHHHHHHhcCCCeEEEEcc
Q 028125 19 WQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVG 98 (213)
Q Consensus 19 ~~~~~~~~~~~~~~iI~i~G~I~~~~~~~l~~~l~~l~~~~~~~~I~l~INSpGG~v~~~~~I~~~i~~~~~~v~t~~~G 98 (213)
.+|++++++++++|+|+|.|+||+++++.++++|.+|+.+++.++|+|+||||||+|+++++|+|+|+.++.||+|+|.|
T Consensus 4 ~~~~~i~~~l~~~r~i~l~g~I~~~~~~~~~~~L~~l~~~~~~~~i~i~INSpGG~v~~g~~i~~~i~~~~~~v~t~~~G 83 (182)
T PF00574_consen 4 EEWYDIYSRLLNERIIFLNGPIDEESANRLISQLLYLENEDKNKPINIYINSPGGDVDAGLAIYDAIRSSKAPVTTVVLG 83 (182)
T ss_dssp EEEEEHHHHHHTTTEEEEESSBSHHHHHHHHHHHHHHHHHTSSSEEEEEEEECEBCHHHHHHHHHHHHHSSSEEEEEEEE
T ss_pred cEEEeHHHHHhCCeEEEECCccCHHHHHHHHHHHHHHhccCCCceEEEEEcCCCCccHHHHHHHHHHHhcCCCeEEEEeC
Confidence 58999999999999999999999999999999999998888899999999999999999999999999999999999999
Q ss_pred ccchHHHHHHhcCCCCcEeeccCCeEEEeCCCccCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhcCCce
Q 028125 99 FAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKR 178 (213)
Q Consensus 99 ~aaSaa~~I~~ag~~~~r~~~p~s~i~iH~p~~~~~G~~~d~~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~~~~~ 178 (213)
.|+|+|++|+++|++++|++.|+|.||+|+|+....|+..++...++++.++++++.+.|+++||++++++.+++++++|
T Consensus 84 ~aaSaa~~i~~ag~~~~R~~~~~s~~m~H~p~~~~~g~~~~l~~~~~~l~~~~~~~~~~~~~~tg~~~~~i~~~~~~~~~ 163 (182)
T PF00574_consen 84 LAASAATLIFLAGDKGKRYASPNSRFMIHQPSTGSGGNASELREQAKELEKLNERIANIYAERTGLSKEEIEELMDRDTW 163 (182)
T ss_dssp EEETHHHHHHHTSSTTTEEE-TT-EEEES-CEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHTS-HHHHHHHCSSTEE
T ss_pred ccccceehhhhcCCcCceeeeecCEEEeecceeecccccchhHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHhCCcc
Confidence 99999999999999988999999999999999998889999999999999999999999999999999999999999999
Q ss_pred eCHHHHHHcCCceEecCCc
Q 028125 179 FGSQEALEYGLIDRIIRPP 197 (213)
Q Consensus 179 ~sa~EA~~~GLiD~I~~~~ 197 (213)
|+|+||+++||||+|++++
T Consensus 164 l~a~EA~~~GiiD~I~~~~ 182 (182)
T PF00574_consen 164 LSAEEALEYGIIDEIIESR 182 (182)
T ss_dssp EEHHHHHHHTSSSEEESS-
T ss_pred ccHHHHHHcCCCCEeccCC
Confidence 9999999999999999864
No 11
>PRK14512 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=100.00 E-value=4.3e-46 Score=306.22 Aligned_cols=177 Identities=27% Similarity=0.469 Sum_probs=170.1
Q ss_pred hhhHHhhccCcEEEEccccCcchHHHHHHHHHhhccCCCCCceEEEEeCCCCChhHHHHHHHHHHhcCCCeEEEEccccc
Q 028125 22 VDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAY 101 (213)
Q Consensus 22 ~~~~~~~~~~~iI~i~G~I~~~~~~~l~~~l~~l~~~~~~~~I~l~INSpGG~v~~~~~I~~~i~~~~~~v~t~~~G~aa 101 (213)
.+++++++++|+|+|.|+|+++.++.++++|.+++..++.++|+|+||||||+|++|++|||+|+.++.||+|+|.|.|+
T Consensus 14 ~~~~~~l~~~r~I~i~g~I~~~~~~~i~~~L~~l~~~~~~~~I~l~INSpGG~v~ag~aI~d~i~~~~~~V~t~v~G~Aa 93 (197)
T PRK14512 14 DKSLEKFLKSRSIVIAGEINKDLSELFQEKILLLEALDSKKPIFVYIDSEGGDIDAGFAIFNMIRFVKPKVFTIGVGLVA 93 (197)
T ss_pred chHHHHHhcCcEEEECCEEcHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCCHHHHHHHHHHHHhCCCCEEEEEEeeeH
Confidence 45689999999999999999999999999999998877789999999999999999999999999999999999999999
Q ss_pred hHHHHHHhcCCCCcEeeccCCeEEEeCCCccCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhcCCceeCH
Q 028125 102 HLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGS 181 (213)
Q Consensus 102 Saa~~I~~ag~~~~r~~~p~s~i~iH~p~~~~~G~~~d~~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~~~~~~sa 181 (213)
|+|++|+++|++++|++.|||++|+|+|+++..|++++++..+++++++++.+.++|+++||++.+++.+++++++||||
T Consensus 94 SaaslIl~ag~~~~R~~~p~s~imiHqP~~~~~G~a~di~~~a~~l~~~~~~i~~~~a~~tg~~~~~i~~~~~~d~~lta 173 (197)
T PRK14512 94 SAAALIFLAAKKESRFSLPNARYLLHQPLSGFKGVATDIEIYANELNKVKSELNDIIAKETGQELDKVEKDTDRDFWLDS 173 (197)
T ss_pred hHHHHHHhcCCcCceeECCCCcEEEEcCccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHhhhcCcccCH
Confidence 99999999999999999999999999999988999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCceEecCCcc
Q 028125 182 QEALEYGLIDRIIRPPR 198 (213)
Q Consensus 182 ~EA~~~GLiD~I~~~~~ 198 (213)
+||++|||||+|.++..
T Consensus 174 ~EA~~yGliD~I~~~~~ 190 (197)
T PRK14512 174 SSAVKYGLVFEVVETRL 190 (197)
T ss_pred HHHHHcCCccEeecCcH
Confidence 99999999999998743
No 12
>PRK12553 ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=100.00 E-value=1.1e-45 Score=306.19 Aligned_cols=180 Identities=42% Similarity=0.698 Sum_probs=172.9
Q ss_pred CchhhhHHhhccCcEEEEccccCcchHHHHHHHHHhhccCCCCCceEEEEeCCCCChhHHHHHHHHHHhcCCCeEEEEcc
Q 028125 19 WQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVG 98 (213)
Q Consensus 19 ~~~~~~~~~~~~~~iI~i~G~I~~~~~~~l~~~l~~l~~~~~~~~I~l~INSpGG~v~~~~~I~~~i~~~~~~v~t~~~G 98 (213)
+.|.|++++++++|+|||+|+|++++++.++++|.+++.+++.++|+|+||||||+++++++||++|+.++.||+|+|.|
T Consensus 23 ~~~~~~~~~l~~~r~I~l~g~I~~~~~~~i~~~L~~l~~~~~~~~I~l~INSpGG~v~~g~~I~d~i~~~~~~v~t~~~G 102 (207)
T PRK12553 23 VKESDPYNKLFEERIIFLGGQVDDASANDVMAQLLVLESIDPDRDITLYINSPGGSVTAGDAIYDTIQFIRPDVQTVCTG 102 (207)
T ss_pred CccccHHHHHhcCeEEEEcceECHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCCCcHHHHHHHHHHHHhcCCCcEEEEEe
Confidence 66799999999999999999999999999999999999888789999999999999999999999999999999999999
Q ss_pred ccchHHHHHHhcCCCCcEeeccCCeEEEeCCC--ccCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhcCC
Q 028125 99 FAYHLAGFLLAGGEKGNRSAMPLSRIALDSPA--GAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRI 176 (213)
Q Consensus 99 ~aaSaa~~I~~ag~~~~r~~~p~s~i~iH~p~--~~~~G~~~d~~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~~~ 176 (213)
.|+|+|++|+++|++++|++.|+|++|+|+|+ .+..|++.|++.+.++++++++.+.++|+++||++.++++++++++
T Consensus 103 ~aaSaa~lI~~ag~~~~R~~~p~s~imiH~p~~~~~~~G~a~d~~~~~~~l~~~~~~~~~~ya~~tg~~~e~i~~~~~~~ 182 (207)
T PRK12553 103 QAASAGAVLLAAGTPGKRFALPNARILIHQPSLGGGIRGQASDLEIQAREILRMRERLERILAEHTGQSVEKIRKDTDRD 182 (207)
T ss_pred ehhhHHHHHHHcCCcCcEEECCCchhhhcCccccCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhcC
Confidence 99999999999999888999999999999998 4578999999999999999999999999999999999999999999
Q ss_pred ceeCHHHHHHcCCceEecCCcc
Q 028125 177 KRFGSQEALEYGLIDRIIRPPR 198 (213)
Q Consensus 177 ~~~sa~EA~~~GLiD~I~~~~~ 198 (213)
+||||+||+++||||+|.++..
T Consensus 183 ~~lta~EA~e~GliD~I~~~~~ 204 (207)
T PRK12553 183 KWLTAEEAKDYGLVDQIITSYR 204 (207)
T ss_pred ccccHHHHHHcCCccEEcCchh
Confidence 9999999999999999998754
No 13
>cd07017 S14_ClpP_2 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activ
Probab=100.00 E-value=1.6e-44 Score=291.05 Aligned_cols=171 Identities=51% Similarity=0.861 Sum_probs=165.6
Q ss_pred hhHHhhccCcEEEEccccCcchHHHHHHHHHhhccCCCCCceEEEEeCCCCChhHHHHHHHHHHhcCCCeEEEEccccch
Q 028125 23 DLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYH 102 (213)
Q Consensus 23 ~~~~~~~~~~iI~i~G~I~~~~~~~l~~~l~~l~~~~~~~~I~l~INSpGG~v~~~~~I~~~i~~~~~~v~t~~~G~aaS 102 (213)
+++++++++|+|+|.|+|+++.++.++++|.+++.++..++|+|+||||||++++++.||+.|+.++.||+|++.|.|+|
T Consensus 1 ~~~~~l~~~r~i~i~g~I~~~~~~~i~~~l~~~~~~~~~~~i~l~inSpGG~v~~~~~i~~~l~~~~~~v~t~~~g~aaS 80 (171)
T cd07017 1 DIYSRLLKERIIFLGGPIDDEVANLIIAQLLYLESEDPKKPIYLYINSPGGSVTAGLAIYDTMQYIKPPVSTICLGLAAS 80 (171)
T ss_pred ChhHhhhcCcEEEEcCEEcHHHHHHHHHHHHHHHccCCCCceEEEEECCCCCHHHHHHHHHHHHhcCCCEEEEEEeEehh
Confidence 57899999999999999999999999999999998887899999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCcEeeccCCeEEEeCCCccCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhcCCceeCHH
Q 028125 103 LAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQ 182 (213)
Q Consensus 103 aa~~I~~ag~~~~r~~~p~s~i~iH~p~~~~~G~~~d~~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~~~~~~sa~ 182 (213)
+|++|+++|++++|++.|+|++|+|+|+.+..|+.+|+..+++++.++++++.++|+++||++.+++.+++++++||||+
T Consensus 81 ~~~~i~~~g~~~~r~~~~~a~~~~h~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~tg~~~~~i~~~~~~~~~lta~ 160 (171)
T cd07017 81 MGALLLAAGTKGKRYALPNSRIMIHQPLGGAGGQASDIEIQAKEILRLRRRLNEILAKHTGQPLEKIEKDTDRDRYMSAE 160 (171)
T ss_pred HHHHHHHcCCCCCEEEccchHHHHcCCCccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhCCccccHH
Confidence 99999999997779999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCceEe
Q 028125 183 EALEYGLIDRI 193 (213)
Q Consensus 183 EA~~~GLiD~I 193 (213)
||+++||||+|
T Consensus 161 EA~e~GiiD~V 171 (171)
T cd07017 161 EAKEYGLIDKI 171 (171)
T ss_pred HHHHcCCCccC
Confidence 99999999986
No 14
>cd07013 S14_ClpP Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. Additionally, they are implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of proteas
Probab=100.00 E-value=2.6e-43 Score=281.80 Aligned_cols=162 Identities=36% Similarity=0.599 Sum_probs=157.8
Q ss_pred cEEEEccccCcchHHHHHHHHHhhccCCCCCceEEEEeCCCCChhHHHHHHHHHHhcCCCeEEEEccccchHHHHHHhcC
Q 028125 32 RVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGG 111 (213)
Q Consensus 32 ~iI~i~G~I~~~~~~~l~~~l~~l~~~~~~~~I~l~INSpGG~v~~~~~I~~~i~~~~~~v~t~~~G~aaSaa~~I~~ag 111 (213)
|+|+|+|+|++.+++.++++|.+++.+++.++|+|+||||||+++++++||++|+.++.||+|++.|.|+|+|++|+++|
T Consensus 1 r~i~i~g~I~~~~~~~~~~~L~~l~~~~~~~~i~l~InSpGG~v~~~~~i~~~i~~~~~~v~~~~~g~aaS~~~~i~~a~ 80 (162)
T cd07013 1 REIMLTGEVEDISANQFAAQLLFLGAVNPEKDIYLYINSPGGDVFAGMAIYDTIKFIKADVVTIIDGLAASMGSVIAMAG 80 (162)
T ss_pred CEEEEccEECcHHHHHHHHHHHHHhcCCCCCCEEEEEECCCCcHHHHHHHHHHHHhcCCCceEEEEeehhhHHHHHHHcC
Confidence 68999999999999999999999998888899999999999999999999999999999999999999999999999999
Q ss_pred CCCcEeeccCCeEEEeCCCccCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhcCCceeCHHHHHHcCCce
Q 028125 112 EKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLID 191 (213)
Q Consensus 112 ~~~~r~~~p~s~i~iH~p~~~~~G~~~d~~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~~~~~~sa~EA~~~GLiD 191 (213)
++|.|++.|++.+|+|+|+++..|+..|++...+++++.++.|.++|+++||++++++++++++++||||+||+++||||
T Consensus 81 ~~g~r~~~p~a~~~ih~~~~~~~g~~~d~~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~~~~~~sa~eA~~~GliD 160 (162)
T cd07013 81 AKGKRFILPNAMMMIHQPWGGTLGDATDMRIYADLLLKVEGNLVSAYAHKTGQSEEELHADLERDTWLSAREAVEYGFAD 160 (162)
T ss_pred CCCcEEEecCEEEEEccCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHcCCccccHHHHHHcCCCC
Confidence 98889999999999999999889999999999999999999999999999999999999999999999999999999999
Q ss_pred Ee
Q 028125 192 RI 193 (213)
Q Consensus 192 ~I 193 (213)
+|
T Consensus 161 ~i 162 (162)
T cd07013 161 TI 162 (162)
T ss_pred cC
Confidence 86
No 15
>cd07016 S14_ClpP_1 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. This subfamily only contains bacterial sequences. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which a
Probab=100.00 E-value=6.9e-35 Score=232.15 Aligned_cols=156 Identities=29% Similarity=0.415 Sum_probs=148.6
Q ss_pred EEEEccccCc---chHHHHHHHHHhhccCCCCCceEEEEeCCCCChhHHHHHHHHHHhcCCCeEEEEccccchHHHHHHh
Q 028125 33 VIFIGQNIDE---EFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLA 109 (213)
Q Consensus 33 iI~i~G~I~~---~~~~~l~~~l~~l~~~~~~~~I~l~INSpGG~v~~~~~I~~~i~~~~~~v~t~~~G~aaSaa~~I~~ 109 (213)
.|+|+|+|++ .+++.+.+.|.++..+ ++|.|+||||||++.+++.|++.|+.+++||++++.|.|+|+|++|++
T Consensus 2 ~i~~~g~I~~~~~~~~~~~~~~l~~~~~~---~~i~l~inspGG~~~~~~~i~~~i~~~~~pvi~~v~g~a~s~g~~ia~ 78 (160)
T cd07016 2 EIYIYGDIGSDWGVTAKEFKDALDALGDD---SDITVRINSPGGDVFAGLAIYNALKRHKGKVTVKIDGLAASAASVIAM 78 (160)
T ss_pred EEEEEeEeCCCcccCHHHHHHHHHhccCC---CCEEEEEECCCCCHHHHHHHHHHHHhcCCCEEEEEcchHHhHHHHHHh
Confidence 5899999999 7899999999977543 799999999999999999999999999999999999999999999999
Q ss_pred cCCCCcEeeccCCeEEEeCCCccCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhcCCceeCHHHHHHcCC
Q 028125 110 GGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGL 189 (213)
Q Consensus 110 ag~~~~r~~~p~s~i~iH~p~~~~~G~~~d~~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~~~~~~sa~EA~~~GL 189 (213)
+||+ |++.|+|.|++|+|.....|+..++....++++++++++.+.|++++|++++++++++..++||+++||+++||
T Consensus 79 a~d~--~~~~~~a~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~~i~~~~~~~~~l~a~eA~~~Gl 156 (160)
T cd07016 79 AGDE--VEMPPNAMLMIHNPSTGAAGNADDLRKAADLLDKIDESIANAYAEKTGLSEEEISALMDAETWLTAQEAVELGF 156 (160)
T ss_pred cCCe--EEECCCcEEEEECCccccCcCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhCCeECcHHHHHHcCC
Confidence 9998 99999999999999988888888999999999999999999999999999999999999999999999999999
Q ss_pred ceEe
Q 028125 190 IDRI 193 (213)
Q Consensus 190 iD~I 193 (213)
||+|
T Consensus 157 iD~v 160 (160)
T cd07016 157 ADEI 160 (160)
T ss_pred CCcC
Confidence 9986
No 16
>cd07015 Clp_protease_NfeD Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially cle
Probab=100.00 E-value=1.2e-32 Score=221.62 Aligned_cols=158 Identities=18% Similarity=0.208 Sum_probs=138.3
Q ss_pred cEEEEccccCcchHHHHHHHHHhhccCCCCCceEEEEeCCCCChhHHHHHHHHHHhcCCCeEEEEc---cccchHHHHHH
Q 028125 32 RVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCV---GFAYHLAGFLL 108 (213)
Q Consensus 32 ~iI~i~G~I~~~~~~~l~~~l~~l~~~~~~~~I~l~INSpGG~v~~~~~I~~~i~~~~~~v~t~~~---G~aaSaa~~I~ 108 (213)
.+|.|.|+|++.....+.+.|..++. ++.+.|+|+||||||.+++++.|++.|+.++.||+++|. |.|+|+|++|+
T Consensus 2 ~vi~i~G~I~~~~~~~l~~~l~~A~~-~~~~~i~l~inSPGG~v~~~~~I~~~i~~~~~pvv~~v~p~g~~AaSag~~I~ 80 (172)
T cd07015 2 YVAQIKGQITSYTYDQFDRYITIAEQ-DNAEAIIIELDTPGGRADAAGNIVQRIQQSKIPVIIYVYPPGASAASAGTYIA 80 (172)
T ss_pred EEEEEeeEECHhHHHHHHHHHHHHhc-CCCCeEEEEEECCCCCHHHHHHHHHHHHhcCcCEEEEEecCCCeehhHHHHHH
Confidence 36889999999998888888887654 468999999999999999999999999999999999999 99999999999
Q ss_pred hcCCCCcEeeccCCeEEEeCCCccCCCC-----hHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhcCCceeCHHH
Q 028125 109 AGGEKGNRSAMPLSRIALDSPAGAARGQ-----ADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQE 183 (213)
Q Consensus 109 ~ag~~~~r~~~p~s~i~iH~p~~~~~G~-----~~d~~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~~~~~~sa~E 183 (213)
++|++ |+|.|+|+++.|+|... .|+ ..+.+....++..+++ +++++|++.+.+++++++++|||++|
T Consensus 81 ~a~~~--i~m~p~s~iG~~~pi~~-~g~~~~~~~~~~ki~~~~~~~~r~-----~A~~~Gr~~~~a~~~v~~~~~lta~E 152 (172)
T cd07015 81 LGSHL--IAMAPGTSIGACRPILG-YSQNGSIIEAPPKITNYFIAYIKS-----LAQESGRNATIAEEFITKDLSLTPEE 152 (172)
T ss_pred HhcCc--eEECCCCEEEEcccccc-CCCCCccccchHHHHHHHHHHHHH-----HHHHHCcCHHHHHHHHHhhcCcCHHH
Confidence 99999 99999999999999754 244 3344444455544443 89999999999999999999999999
Q ss_pred HHHcCCceEecCCcc
Q 028125 184 ALEYGLIDRIIRPPR 198 (213)
Q Consensus 184 A~~~GLiD~I~~~~~ 198 (213)
|+++|+||.|.++.+
T Consensus 153 A~~~G~iD~ia~~~~ 167 (172)
T cd07015 153 ALKYGVIEVVARDIN 167 (172)
T ss_pred HHHcCCceeeeCCHH
Confidence 999999999998754
No 17
>cd00394 Clp_protease_like Caseinolytic protease (ClpP) is an ATP-dependent protease. Clp protease (caseinolytic protease; ClpP; endopeptidase Clp; Peptidase S14; ATP-dependent protease, ClpAP)-like enzymes are highly conserved serine proteases and belong to the ClpP/Crotonase superfamily. Included in this family are Clp proteases that are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. The functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activity in the presence of ATP. Active site consists of the triad Ser, His and Asp, preferring hydrophobic or non-polar residues at P1 or P1' positions. The protease exists as a tetradec
Probab=100.00 E-value=3.1e-32 Score=216.59 Aligned_cols=159 Identities=26% Similarity=0.411 Sum_probs=148.6
Q ss_pred EEEEccccCcchHHHHHHHHHhhccCCCCCceEEEEeCCCCChhHHHHHHHHHHhcCCCeEEEEccccchHHHHHHhcCC
Q 028125 33 VIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGE 112 (213)
Q Consensus 33 iI~i~G~I~~~~~~~l~~~l~~l~~~~~~~~I~l~INSpGG~v~~~~~I~~~i~~~~~~v~t~~~G~aaSaa~~I~~ag~ 112 (213)
+|+|+|+|++.+.+.+++.|..++.+++.+.|+|++|||||++.++..|+++|+.+++||++++.|.|+|+|++|+++||
T Consensus 1 vi~i~g~I~~~~~~~l~~~l~~a~~d~~~~~ivl~~~s~Gg~~~~~~~i~~~l~~~~kpvva~~~g~~~s~g~~la~~~d 80 (161)
T cd00394 1 VIFINGVIEDVSADQLAAQIRFAEADNSVKAIVLEVNTPGGRVDAGMNIVDALQASRKPVIAYVGGQAASAGYYIATAAN 80 (161)
T ss_pred CEEEEeEEccchHHHHHHHHHHHHhCCCCceEEEEEECCCcCHHHHHHHHHHHHHhCCCEEEEECChhHHHHHHHHhCCC
Confidence 58999999999999999999999888889999999999999999999999999999999999999999999999999999
Q ss_pred CCcEeeccCCeEEEeCCCccCCCCh--HHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhcCCceeCHHHHHHcCCc
Q 028125 113 KGNRSAMPLSRIALDSPAGAARGQA--DDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLI 190 (213)
Q Consensus 113 ~~~r~~~p~s~i~iH~p~~~~~G~~--~d~~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~~~~~~sa~EA~~~GLi 190 (213)
+ |++.|++.+++|+|.....+.. .+.+...+.++.+.+.|.+.++++|+++++++.+.+.++.||+++||+++|||
T Consensus 81 ~--~~~~~~a~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~r~~~~~~~~~~~~~~~~~~a~eA~~~GLv 158 (161)
T cd00394 81 K--IVMAPGTRVGSHGPIGGYGGNGNPTAQEADQRIILYFIARFISLVAENRGQTTEKLEEDIEKDLVLTAQEALEYGLV 158 (161)
T ss_pred E--EEECCCCEEEEeeeEEecCCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHhcCCcEEcHHHHHHcCCc
Confidence 8 9999999999999987655443 66666778899999999999999999999999999998999999999999999
Q ss_pred eEe
Q 028125 191 DRI 193 (213)
Q Consensus 191 D~I 193 (213)
|+|
T Consensus 159 D~i 161 (161)
T cd00394 159 DAL 161 (161)
T ss_pred CcC
Confidence 986
No 18
>cd07020 Clp_protease_NfeD_1 Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially c
Probab=99.97 E-value=2.2e-29 Score=205.65 Aligned_cols=168 Identities=18% Similarity=0.204 Sum_probs=143.0
Q ss_pred cEEEEccccCcchHHHHHHHHHhhccCCCCCceEEEEeCCCCChhHHHHHHHHHHhcCCCeEEEEc---cccchHHHHHH
Q 028125 32 RVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCV---GFAYHLAGFLL 108 (213)
Q Consensus 32 ~iI~i~G~I~~~~~~~l~~~l~~l~~~~~~~~I~l~INSpGG~v~~~~~I~~~i~~~~~~v~t~~~---G~aaSaa~~I~ 108 (213)
.+|.|+|+|++.....+.+.|+.++.+ +.+.|.|+||||||+++++..|++.|+.+++||++.+. |.|+|+|++|+
T Consensus 2 ~vv~i~g~I~~~~~~~l~~~l~~a~~~-~~~~vvl~InSpGG~v~~~~~i~~~l~~~~kPvia~v~~~~G~AasgG~~ia 80 (187)
T cd07020 2 YVLEINGAITPATADYLERAIDQAEEG-GADALIIELDTPGGLLDSTREIVQAILASPVPVVVYVYPSGARAASAGTYIL 80 (187)
T ss_pred EEEEEeeEEChHHHHHHHHHHHHHHhC-CCCEEEEEEECCCCCHHHHHHHHHHHHhCCCCEEEEEecCCCCchhHHHHHH
Confidence 478999999999999999999988754 48999999999999999999999999999999999998 99999999999
Q ss_pred hcCCCCcEeeccCCeEEEeCCCccCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhcCCceeCHHHHHHcC
Q 028125 109 AGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYG 188 (213)
Q Consensus 109 ~ag~~~~r~~~p~s~i~iH~p~~~~~G~~~d~~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~~~~~~sa~EA~~~G 188 (213)
++||+ |++.|+|+|++|.|.....+...+...+.+.+..+. .+...|++++|++++.+++++..+++|+++||+++|
T Consensus 81 la~D~--iva~p~a~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~G~~~~~a~~~l~~g~~~~a~eA~~~G 157 (187)
T cd07020 81 LAAHI--AAMAPGTNIGAAHPVAIGGGGGSDPVMEKKILNDAV-AYIRSLAELRGRNAEWAEKAVRESLSLTAEEALKLG 157 (187)
T ss_pred HhCCc--eeECCCCcEEeccccccCCCCcchHHHHHHHHHHHH-HHHHHHHHHcCCCHHHHHHHHHcCCeecHHHHHHcC
Confidence 99999 999999999999998443332223333444555554 357788999999999999988889999999999999
Q ss_pred CceEecCCc-cccccC
Q 028125 189 LIDRIIRPP-RIKEDM 203 (213)
Q Consensus 189 LiD~I~~~~-~~~~~~ 203 (213)
|+|+|.++. ++.+..
T Consensus 158 lvd~v~~~~~~~~~~~ 173 (187)
T cd07020 158 VIDLIAADLNELLKKL 173 (187)
T ss_pred CcccccCCHHHHHHHc
Confidence 999999886 455443
No 19
>cd07021 Clp_protease_NfeD_like Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentiall
Probab=99.96 E-value=5.4e-28 Score=195.97 Aligned_cols=159 Identities=18% Similarity=0.181 Sum_probs=137.3
Q ss_pred cEEEEccccCcchHHHHHHHHHhhccCCCCCceEEEEeCCCCChhHHHHHHHHHHhcCCCeEEEEccccchHHHHHHhcC
Q 028125 32 RVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGG 111 (213)
Q Consensus 32 ~iI~i~G~I~~~~~~~l~~~l~~l~~~~~~~~I~l~INSpGG~v~~~~~I~~~i~~~~~~v~t~~~G~aaSaa~~I~~ag 111 (213)
-+|.+.|+|++..++.+.+.|..+.+++ .+.|+|+||||||.++++..|++.|+.+++||++++.|.|+|+|++|+++|
T Consensus 2 ~vi~i~g~I~~~~~~~l~~~l~~a~~~~-~~~ivl~inspGG~v~~~~~I~~~l~~~~~pvva~V~g~AaSaG~~ia~a~ 80 (178)
T cd07021 2 YVIPIEGEIDPGLAAFVERALKEAKEEG-ADAVVLDIDTPGGRVDSALEIVDLILNSPIPTIAYVNDRAASAGALIALAA 80 (178)
T ss_pred EEEEEeeEECHHHHHHHHHHHHHHHhCC-CCeEEEEEECcCCCHHHHHHHHHHHHhCCCCEEEEECCchHHHHHHHHHhC
Confidence 3689999999999898888888776654 899999999999999999999999999999999999999999999999999
Q ss_pred CCCcEeeccCCeEEEeCCCccCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhcCC-------------ce
Q 028125 112 EKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRI-------------KR 178 (213)
Q Consensus 112 ~~~~r~~~p~s~i~iH~p~~~~~G~~~d~~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~~~-------------~~ 178 (213)
|+ ++|.|+|.++.|.|.....+...+ .+ +......+.+.+++++|++.+.++++++++ .|
T Consensus 81 d~--i~m~p~a~iG~~~~v~~~~~~~~~----~K-~~~~~~~~~~~~A~~~gr~~~~a~~mv~~~~~v~~~~~~~~~~l~ 153 (178)
T cd07021 81 DE--IYMAPGATIGAAEPIPGDGNGAAD----EK-VQSYWRAKMRAAAEKKGRDPDIAEAMVDKDIEVPGVGIKGGELLT 153 (178)
T ss_pred Ce--EEECCCCeEecCeeEcCCCccchh----HH-HHHHHHHHHHHHHHHhCCCHHHHHHHhhhhcccccccccccceee
Confidence 98 999999999999998654443222 12 233334456679999999999999999988 59
Q ss_pred eCHHHHHHcCCceEecCCcc
Q 028125 179 FGSQEALEYGLIDRIIRPPR 198 (213)
Q Consensus 179 ~sa~EA~~~GLiD~I~~~~~ 198 (213)
||++||+++|++|.|..+.+
T Consensus 154 lta~eA~~~g~~d~ia~~~~ 173 (178)
T cd07021 154 LTADEALKVGYAEGIAGSLD 173 (178)
T ss_pred eCHHHHHHhCCeEEEECCHH
Confidence 99999999999999987643
No 20
>TIGR00706 SppA_dom signal peptide peptidase SppA, 36K type. The member of this family from Bacillus subtilis was shown to have properties consistent with a role in degrading signal peptides after cleavage from precursor proteins, although it was not demonstrated conclusively.
Probab=99.91 E-value=9.7e-24 Score=174.86 Aligned_cols=167 Identities=16% Similarity=0.204 Sum_probs=139.2
Q ss_pred cEEEEccccCcchHHHHHHHHHhhccCCCCCceEEEEeCCCCChhHHHHHHHHHHhcC--CCeEEEEccccchHHHHHHh
Q 028125 32 RVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLK--SPVGTHCVGFAYHLAGFLLA 109 (213)
Q Consensus 32 ~iI~i~G~I~~~~~~~l~~~l~~l~~~~~~~~I~l~INSpGG~v~~~~~I~~~i~~~~--~~v~t~~~G~aaSaa~~I~~ 109 (213)
.+|+|.|+|+ .+.+.+.+.|..+..+++.+.|.|++|||||++..+..|+++|+.++ +||++++.|.|+|+|++|++
T Consensus 3 ~vi~i~g~i~-~s~~~l~~~l~~a~~d~~i~~vvl~~~s~Gg~~~~~~~l~~~i~~~~~~kpvia~v~g~a~s~g~~la~ 81 (207)
T TIGR00706 3 AILPVSGAIA-VSPEDFDKKIKRIKDDKSIKALLLRINSPGGTVVASEEIYEKLKKLKAKKPVVASMGGVAASGGYYIAM 81 (207)
T ss_pred EEEEEEEEEe-cCHHHHHHHHHHHhhCCCccEEEEEecCCCCCHHHHHHHHHHHHHhcCCCCEEEEECCccchHHHHHHh
Confidence 5799999998 56788899999888778899999999999999999999999999998 99999999999999999999
Q ss_pred cCCCCcEeeccCCeEEEeCCCc------------------cCCCC------------hHHHHHHHHHHHHHHHHHHHHHH
Q 028125 110 GGEKGNRSAMPLSRIALDSPAG------------------AARGQ------------ADDIRNEADELLRVRDYIFKELS 159 (213)
Q Consensus 110 ag~~~~r~~~p~s~i~iH~p~~------------------~~~G~------------~~d~~~~~~~l~~~~~~~~~~~a 159 (213)
+||+ |+|.|++.++...+.. ...|+ .++.+.....++.+.+.|.+.++
T Consensus 82 aaD~--i~a~p~a~vg~iGv~~~~~~~~~~l~k~Gv~~~~~~~g~~K~~~~~~~~~s~~~~e~~~~~l~~~~~~f~~~va 159 (207)
T TIGR00706 82 AADE--IVANPGTITGSIGVILQGANVEKLYEKLGIEFEVIKSGEYKDIGSPTRELTPEERDILQNLVNESYEQFVQVVA 159 (207)
T ss_pred cCCE--EEECCCCeEEeeeEEEecCCHHHHHHhCCceEEEEEcCCCcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999 9999999765322110 01111 12233344567888899999999
Q ss_pred HHhCCCHHHHHHHhcCCceeCHHHHHHcCCceEecCCcccccc
Q 028125 160 RKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRIIRPPRIKED 202 (213)
Q Consensus 160 ~~tg~~~~~i~~~~~~~~~~sa~EA~~~GLiD~I~~~~~~~~~ 202 (213)
+.++++++.++++++. ..|+++||+++||||+|+..+++.+.
T Consensus 160 ~~R~~~~~~~~~~~~~-~~~~~~~A~~~gLvD~i~~~~~~~~~ 201 (207)
T TIGR00706 160 KGRNLPVEDVKKFADG-RVFTGRQALKLRLVDKLGTEDDALKW 201 (207)
T ss_pred hcCCCCHHHHHHHhcC-CcccHHHHHHcCCCcccCCHHHHHHH
Confidence 9999999999998875 45799999999999999998886654
No 21
>COG0616 SppA Periplasmic serine proteases (ClpP class) [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=99.91 E-value=1.3e-23 Score=184.48 Aligned_cols=167 Identities=21% Similarity=0.213 Sum_probs=136.1
Q ss_pred CcEEEEccccCcch-------HHHHHHHHHhhccCCCCCceEEEEeCCCCChhHHHHHHHHHHhcCC--CeEEEEccccc
Q 028125 31 ERVIFIGQNIDEEF-------SNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKS--PVGTHCVGFAY 101 (213)
Q Consensus 31 ~~iI~i~G~I~~~~-------~~~l~~~l~~l~~~~~~~~I~l~INSpGG~v~~~~~I~~~i~~~~~--~v~t~~~G~aa 101 (213)
-.+|.+.|.|.... .+.+.+.|+.+..+++.++|.|+||||||++.++..|+++|+.++. ||++++.++||
T Consensus 61 Iavi~~~G~I~~~~~~~~~~~~~~~~~~l~~~~~~~~vk~vvL~inSPGG~v~as~~i~~~l~~l~~~~PV~v~v~~~AA 140 (317)
T COG0616 61 IAVIHVEGAIVAGGGPLRFIGGDDIEEILRAARADPSVKAVVLRINSPGGSVVASELIARALKRLRAKKPVVVSVGGYAA 140 (317)
T ss_pred EEEEEeeeeeecCCCccccccHHHHHHHHHHHhcCCCCceEEEEEECcCCchhHHHHHHHHHHHHhhcCCEEEEECCeec
Confidence 45788999998544 6677777888888888999999999999999999999999999985 79999999999
Q ss_pred hHHHHHHhcCCCCcEeeccCCeEEE------eCCC------------ccCCCC------------hHHHHHHHHHHHHHH
Q 028125 102 HLAGFLLAGGEKGNRSAMPLSRIAL------DSPA------------GAARGQ------------ADDIRNEADELLRVR 151 (213)
Q Consensus 102 Saa~~I~~ag~~~~r~~~p~s~i~i------H~p~------------~~~~G~------------~~d~~~~~~~l~~~~ 151 (213)
|+||||+|+||+ ++|.|+|.++- |... ....|. .++.+...+.++...
T Consensus 141 SGGY~IA~aAd~--I~a~p~si~GSIGVi~~~~~~~~l~~k~Gv~~~~~~ag~~k~~~~~~~~~t~e~~~~~q~~~~e~y 218 (317)
T COG0616 141 SGGYYIALAADK--IVADPSSITGSIGVISGAPNFEELLEKLGVEKEVITAGEYKDILSPFRPLTEEEREILQKEIDETY 218 (317)
T ss_pred chhhhhhccCCE--EEecCCceeeeceeEEecCCHHHHHHhcCCceeeeeccccccccCcccCCCHHHHHHHHHHHHHHH
Confidence 999999999999 99999997642 1110 001111 233333446778888
Q ss_pred HHHHHHHHHHhCCCHHHHHHHhcCCceeCHHHHHHcCCceEecCCcccc
Q 028125 152 DYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRIIRPPRIK 200 (213)
Q Consensus 152 ~~~~~~~a~~tg~~~~~i~~~~~~~~~~sa~EA~~~GLiD~I~~~~~~~ 200 (213)
+.|.+.+++.++++.+.+.+..+ ++.|++++|+++||||++++.+++.
T Consensus 219 ~~F~~~V~~~R~~~~~~~~~~a~-g~v~~g~~A~~~gLVDelg~~~~av 266 (317)
T COG0616 219 DEFVDKVAEGRGLSDEAVDKLAT-GRVWTGQQALELGLVDELGGLDDAV 266 (317)
T ss_pred HHHHHHHHhcCCCChhHHHHHhc-cceecHHHhhhcCCchhcCCHHHHH
Confidence 99999999999999988777666 6778899999999999999987754
No 22
>cd07014 S49_SppA Signal peptide peptidase A. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is an intramembrane enzyme found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be ClpP-like serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain, cleaving peptide bonds in the plane of the lipid bilayer. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal p
Probab=99.90 E-value=6.5e-23 Score=165.84 Aligned_cols=147 Identities=15% Similarity=0.096 Sum_probs=128.3
Q ss_pred HHHHHHHHHhhccCCCCCceEEEEeCCCCChhHHHHHHHHHH---hcCCCeEEEEccccchHHHHHHhcCCCCcEeeccC
Q 028125 45 SNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQ---SLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPL 121 (213)
Q Consensus 45 ~~~l~~~l~~l~~~~~~~~I~l~INSpGG~v~~~~~I~~~i~---~~~~~v~t~~~G~aaSaa~~I~~ag~~~~r~~~p~ 121 (213)
.+.+.+.+..++.+++.+.|+|.+|||||++.....+.+.++ ++++||++++.|.|+|+|++|+++||. +++.|+
T Consensus 24 ~~~l~~~l~~a~~d~~v~~vvl~~~~~gg~~~~~~~~~~~i~~~~~~~kpVia~v~G~a~g~g~~la~a~D~--i~a~~~ 101 (177)
T cd07014 24 GDTTAAQIRDARLDPKVKAIVLRVNSPGGSVTASEVIRAELAAARAAGKPVVASGGGNAASGGYWISTPANY--IVANPS 101 (177)
T ss_pred HHHHHHHHHHHhcCCCceEEEEEeeCCCcCHHHHHHHHHHHHHHHhCCCCEEEEECCchhHHHHHHHHhCCE--EEECCC
Confidence 568888998888888899999999999999988888776554 457999999999999999999999999 999999
Q ss_pred CeEEEeCCCccCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhcCCceeCHHHHHHcCCceEecCCcccc
Q 028125 122 SRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRIIRPPRIK 200 (213)
Q Consensus 122 s~i~iH~p~~~~~G~~~d~~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~~~~~~sa~EA~~~GLiD~I~~~~~~~ 200 (213)
+.|++|.+... .......++.+.+.|.+.+++.+|++.+.+.+++..+.+|+++||+++||||+|+..++..
T Consensus 102 a~~~~~G~~~~-------~~~~~~~l~~~~~~~~~~v~~~rg~~~~~~~~~l~~g~~~~a~~A~~~GLVD~v~~~~e~~ 173 (177)
T cd07014 102 TLVGSIGIFGV-------QLADQLSIENGYKRFITLVADNRHSTPEQQIDKIAQGGVWTGQDAKANGLVDSLGSFDDAV 173 (177)
T ss_pred CeEEEechHhh-------HHHHHHHHHHHHHHHHHHHHHhCCCCHHHhHHHhcCcCeEeHHHHHHcCCcccCCCHHHHH
Confidence 99999877654 1223456778889999999999999999999999888999999999999999999876644
No 23
>cd07023 S49_Sppa_N_C Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. This subfamily contains members with either a single domain (sometimes referred to as 36K type), such as sohB peptidase, protein C and archaeal signal peptide peptidase, or an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad
Probab=99.90 E-value=8.7e-23 Score=169.09 Aligned_cols=167 Identities=21% Similarity=0.223 Sum_probs=138.0
Q ss_pred cEEEEccccC---cchHHHHHHHHHhhccCCCCCceEEEEeCCCCChhHHHHHHHHHHhc---CCCeEEEEccccchHHH
Q 028125 32 RVIFIGQNID---EEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSL---KSPVGTHCVGFAYHLAG 105 (213)
Q Consensus 32 ~iI~i~G~I~---~~~~~~l~~~l~~l~~~~~~~~I~l~INSpGG~v~~~~~I~~~i~~~---~~~v~t~~~G~aaSaa~ 105 (213)
.+|++.|+|+ +.+...+.+.|..++.+++.+.|.|.+|||||++..+..+++.|+.+ ++||++++.|.|+|+|+
T Consensus 3 ~vi~i~g~i~~~~~~~~~~l~~~l~~a~~d~~i~~ivl~~~s~Gg~~~~~~~i~~~i~~~~~~~kpvia~v~g~~~s~g~ 82 (208)
T cd07023 3 AVIDIEGTISDGGGIGADSLIEQLRKAREDDSVKAVVLRINSPGGSVVASEEIYREIRRLRKAKKPVVASMGDVAASGGY 82 (208)
T ss_pred EEEEEEEEEcCCCCCCHHHHHHHHHHHHhCCCCcEEEEEEECCCCCHHHHHHHHHHHHHHHhcCCcEEEEECCcchhHHH
Confidence 5799999999 77899999999999888889999999999999999999999888654 57999999999999999
Q ss_pred HHHhcCCCCcEeeccCCeEEEeCC------------------CccCCC------------ChHHHHHHHHHHHHHHHHHH
Q 028125 106 FLLAGGEKGNRSAMPLSRIALDSP------------------AGAARG------------QADDIRNEADELLRVRDYIF 155 (213)
Q Consensus 106 ~I~~ag~~~~r~~~p~s~i~iH~p------------------~~~~~G------------~~~d~~~~~~~l~~~~~~~~ 155 (213)
+|+++||+ |++.|++.+..... .....| +.++.+.....++.+.+.|.
T Consensus 83 ~lA~aaD~--i~a~~~s~~g~iG~~~~~~~~~~~l~k~Gi~~~~~~~g~~K~~~~~~~~~s~~~~e~~~~~l~~~~~~f~ 160 (208)
T cd07023 83 YIAAAADK--IVANPTTITGSIGVIGQGPNLEELLDKLGIERDTIKSGPGKDKGSPDRPLTEEERAILQALVDDIYDQFV 160 (208)
T ss_pred HHHhhCCE--EEECCCCeEEeCcEEEecCCHHHHHHhcCCceEEEecCCCccCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999 99999998742211 001111 12233444567888889999
Q ss_pred HHHHHHhCCCHHHHHHHhcCCceeCHHHHHHcCCceEecCCccccc
Q 028125 156 KELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRIIRPPRIKE 201 (213)
Q Consensus 156 ~~~a~~tg~~~~~i~~~~~~~~~~sa~EA~~~GLiD~I~~~~~~~~ 201 (213)
+.+++.|+++.+++.++.+. ..|++++|+++||||+|+..+++.+
T Consensus 161 ~~Va~~R~~~~~~~~~~~~~-~~~~a~~A~~~gLiD~i~~~~~~~~ 205 (208)
T cd07023 161 DVVAEGRGMSGERLDKLADG-RVWTGRQALELGLVDELGGLDDAIA 205 (208)
T ss_pred HHHHhcCCCCHHHHHHhcCC-cEEEHHHHHHcCCCcccCCHHHHHH
Confidence 99999999999999998875 4468999999999999998776543
No 24
>cd07022 S49_Sppa_36K_type Signal peptide peptidase A (SppA) 36K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 36K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily are all bacterial and include sohB peptidase and protein C. These are sometimes referred to as 36K type since they contain only one domain, unlike E. coli SppA that also contains an amino-terminal domain. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases.
Probab=99.90 E-value=1.5e-22 Score=168.55 Aligned_cols=167 Identities=16% Similarity=0.180 Sum_probs=137.2
Q ss_pred cEEEEccccCc-----------chHHHHHHHHHhhccCCCCCceEEEEeCCCCChhHHHHHHHHHHhcC--CCeEEEEcc
Q 028125 32 RVIFIGQNIDE-----------EFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLK--SPVGTHCVG 98 (213)
Q Consensus 32 ~iI~i~G~I~~-----------~~~~~l~~~l~~l~~~~~~~~I~l~INSpGG~v~~~~~I~~~i~~~~--~~v~t~~~G 98 (213)
.+|.+.|+|.+ .+...+.+.|..++.+++.+.|.|.+|||||++.....|+++|+.++ +||++++.|
T Consensus 3 ~vi~~~g~i~~~~~~~~~~~~~~~~~~l~~~l~~a~~d~~i~~Vvl~~~s~gg~~~~~~~l~~~l~~~~~~KpViA~v~g 82 (214)
T cd07022 3 AVIPVHGVLVPRGSWLEASSGLTSYEGIAAAIRAALADPDVRAIVLDIDSPGGEVAGVFELADAIRAARAGKPIVAFVNG 82 (214)
T ss_pred EEEEEEEEEeCCCCcccCCCCcccHHHHHHHHHHHhhCCCCcEEEEEEeCCCCcHHHHHHHHHHHHHHhcCCCEEEEECC
Confidence 35777777766 34678999999998888899999999999999999999999999998 999999999
Q ss_pred ccchHHHHHHhcCCCCcEeeccCCeEEEeCCC------------------ccCCCC------------hHHHHHHHHHHH
Q 028125 99 FAYHLAGFLLAGGEKGNRSAMPLSRIALDSPA------------------GAARGQ------------ADDIRNEADELL 148 (213)
Q Consensus 99 ~aaSaa~~I~~ag~~~~r~~~p~s~i~iH~p~------------------~~~~G~------------~~d~~~~~~~l~ 148 (213)
.|+|+|++++++||+ +++.|++.++..... ....|+ ..+.+...+.++
T Consensus 83 ~a~s~gy~lA~~aD~--i~a~~~a~~g~iG~~~~~~~~~~ll~k~Gi~~~~~~~g~~K~~~~~~~~~s~~~re~~~~~l~ 160 (214)
T cd07022 83 LAASAAYWIASAADR--IVVTPTAGVGSIGVVASHVDQSKALEKAGLKVTLIFAGAHKVDGNPDEPLSDEARARLQAEVD 160 (214)
T ss_pred chhhHHHHHHhcCCE--EEEcCCCeEEeeeEEEecCCHHHHHHhCCCeEEEEEcCCCccCCCCCCCCCHHHHHHHHHHHH
Confidence 999999999999998 999999986432111 001121 223333455678
Q ss_pred HHHHHHHHHHHHHhCCCHHHHHHHhcCCceeCHHHHHHcCCceEecCCcccccc
Q 028125 149 RVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRIIRPPRIKED 202 (213)
Q Consensus 149 ~~~~~~~~~~a~~tg~~~~~i~~~~~~~~~~sa~EA~~~GLiD~I~~~~~~~~~ 202 (213)
.+.+.|.+.+++.|+++.+++++++ +..|+++||+++||||+|+..+++.+.
T Consensus 161 ~~~~~f~~~V~~~R~~~~~~~~~~~--~~~~~~~~Al~~gLvD~i~~~~~~~~~ 212 (214)
T cd07022 161 ALYAMFVAAVARNRGLSAAAVRATE--GGVFRGQEAVAAGLADAVGTLDDALAA 212 (214)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHhh--cCeeeHHHHHHcCCCcccCCHHHHHHH
Confidence 8889999999999999999999887 667899999999999999998876543
No 25
>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type. E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.
Probab=99.89 E-value=4.1e-22 Score=187.30 Aligned_cols=166 Identities=16% Similarity=0.138 Sum_probs=136.6
Q ss_pred EEEEccccCcc-------hHHHHHHHHHhhccCCCCCceEEEEeCCCCChhHHHHHHHHHHhc---CCCeEEEEccccch
Q 028125 33 VIFIGQNIDEE-------FSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSL---KSPVGTHCVGFAYH 102 (213)
Q Consensus 33 iI~i~G~I~~~-------~~~~l~~~l~~l~~~~~~~~I~l~INSpGG~v~~~~~I~~~i~~~---~~~v~t~~~G~aaS 102 (213)
+|+++|+|.+. ..+.+.+.|+.+..+++.+.|+|+||||||++.++..|+++|+.+ ++||++++.|.|+|
T Consensus 312 vI~~~G~I~~~~~~~~~~~~~~~~~~l~~a~~D~~VkaIVLrinSpGGs~~ase~i~~~i~~~~~~gKPVva~~~g~aaS 391 (584)
T TIGR00705 312 IVHLEGPIADGRDTEGNTGGDTVAALLRVARSDPDIKAVVLRINSPGGSVFASEIIRRELARAQARGKPVIVSMGAMAAS 391 (584)
T ss_pred EEEEEEEEcCCCCcccccCHHHHHHHHHHHhhCCCceEEEEEecCCCCCHHHHHHHHHHHHHHHhCCCcEEEEECCcccc
Confidence 89999999753 246778888888888889999999999999999999999998754 48999999999999
Q ss_pred HHHHHHhcCCCCcEeeccCCeE------EEeCC------------CccCC-----------CChHHHHHHHHHHHHHHHH
Q 028125 103 LAGFLLAGGEKGNRSAMPLSRI------ALDSP------------AGAAR-----------GQADDIRNEADELLRVRDY 153 (213)
Q Consensus 103 aa~~I~~ag~~~~r~~~p~s~i------~iH~p------------~~~~~-----------G~~~d~~~~~~~l~~~~~~ 153 (213)
+||+|+++||+ +++.|+|.+ +.+.. ..... .+.++.+.....++...+.
T Consensus 392 ggY~iA~aaD~--I~a~p~t~~GSIGv~~~~~~~~~~l~klGi~~~~~~t~~~~~~s~~~~~t~~~~~~~~~~l~~~y~~ 469 (584)
T TIGR00705 392 GGYWIASAADY--IVASPNTITGSIGVFSVLPTFENSLDRIGVHVDGVSTHELANVSLLRPLTAEDQAIMQLSVEAGYRR 469 (584)
T ss_pred HHHHHHHhCCE--EEECCCCeeecCEEEEEccCHHHHHHhcCCceEEEeccCcCCCCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999998 999999976 33311 00001 1234455566788889999
Q ss_pred HHHHHHHHhCCCHHHHHHHhcCCceeCHHHHHHcCCceEecCCccccc
Q 028125 154 IFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRIIRPPRIKE 201 (213)
Q Consensus 154 ~~~~~a~~tg~~~~~i~~~~~~~~~~sa~EA~~~GLiD~I~~~~~~~~ 201 (213)
|.+.+++.++++.+.++++++. +.|+++||+++||||++++.+++.+
T Consensus 470 F~~~Va~~R~l~~e~v~~ia~G-rv~tg~eA~~~GLVD~ig~~~~Ai~ 516 (584)
T TIGR00705 470 FLSVVSAGRNLTPTQVDKVAQG-RVWTGEDAVSNGLVDALGGLDEAVA 516 (584)
T ss_pred HHHHHHhhCCCCHHHHHHHHhC-CCcCHHHHHHcCCcccCCCHHHHHH
Confidence 9999999999999999988875 6679999999999999998766553
No 26
>PRK10949 protease 4; Provisional
Probab=99.87 E-value=2.1e-21 Score=183.07 Aligned_cols=168 Identities=17% Similarity=0.117 Sum_probs=136.7
Q ss_pred CcEEEEccccCcc-------hHHHHHHHHHhhccCCCCCceEEEEeCCCCChhHHHHHHHHHHhc---CCCeEEEEcccc
Q 028125 31 ERVIFIGQNIDEE-------FSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSL---KSPVGTHCVGFA 100 (213)
Q Consensus 31 ~~iI~i~G~I~~~-------~~~~l~~~l~~l~~~~~~~~I~l~INSpGG~v~~~~~I~~~i~~~---~~~v~t~~~G~a 100 (213)
..+|++.|.|.+. ..+.+.++|+.+..++++++|+|+||||||++.++..|+++|+.. ++||++++.+.|
T Consensus 328 Iavi~~~G~I~~g~~~~g~~~~~~~~~~l~~a~~D~~vkaVvLrInSpGGs~~ase~i~~~i~~~r~~gKPVvas~~~~a 407 (618)
T PRK10949 328 IAVIFANGAIMDGEETPGNVGGDTTAAQIRDARLDPKVKAIVLRVNSPGGSVTASEVIRAELAAARAAGKPVVVSMGGMA 407 (618)
T ss_pred EEEEEEEEEEcCCCCcCCCcCHHHHHHHHHHHHhCCCCcEEEEEecCCCCcHHHHHHHHHHHHHHHhcCCcEEEEECCCC
Confidence 3679999999753 256788999998888999999999999999999999999999654 589999999999
Q ss_pred chHHHHHHhcCCCCcEeeccCCeEE------EeCCC------------ccCCC-----------ChHHHHHHHHHHHHHH
Q 028125 101 YHLAGFLLAGGEKGNRSAMPLSRIA------LDSPA------------GAARG-----------QADDIRNEADELLRVR 151 (213)
Q Consensus 101 aSaa~~I~~ag~~~~r~~~p~s~i~------iH~p~------------~~~~G-----------~~~d~~~~~~~l~~~~ 151 (213)
||+||||+++||+ +++.|+|..+ .|... ....+ +.++-+.....++...
T Consensus 408 ASggY~iA~aad~--I~a~p~t~tGSIGV~~~~~~~~~ll~klGV~~~~~~~~~~~~~~~~~~~s~e~~~~~q~~ld~~y 485 (618)
T PRK10949 408 ASGGYWISTPANY--IVASPSTLTGSIGIFGVINTVENSLDSIGVHTDGVSTSPLADVSITKALPPEFQQMMQLSIENGY 485 (618)
T ss_pred ccHHHHHHHhcCE--EEECCCCceeeCcEEEEccCHHHHHHhcCCceeEEeccccCCccccCCCCHHHHHHHHHHHHHHH
Confidence 9999999999999 9999988643 22110 00111 1222333456678888
Q ss_pred HHHHHHHHHHhCCCHHHHHHHhcCCceeCHHHHHHcCCceEecCCccccc
Q 028125 152 DYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRIIRPPRIKE 201 (213)
Q Consensus 152 ~~~~~~~a~~tg~~~~~i~~~~~~~~~~sa~EA~~~GLiD~I~~~~~~~~ 201 (213)
+.|.+.+++.++++.++++++.+ ++.||+++|+++||||+++..+++.+
T Consensus 486 ~~F~~~Va~~R~~~~~~v~~ia~-Grv~tg~~A~~~GLVD~lG~~~~ai~ 534 (618)
T PRK10949 486 KRFITLVADSRHKTPEQIDKIAQ-GHVWTGQDAKANGLVDSLGDFDDAVA 534 (618)
T ss_pred HHHHHHHHhhCCCCHHHHHHHhc-CCcccHHHHHHcCCCccCCCHHHHHH
Confidence 99999999999999999998776 58899999999999999999887654
No 27
>cd07019 S49_SppA_1 Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppAs in this subfamily are found in all three domains of life and are involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members, the E. coli SppA contains an amino-te
Probab=99.87 E-value=4.1e-21 Score=159.59 Aligned_cols=168 Identities=16% Similarity=0.098 Sum_probs=135.4
Q ss_pred cEEEEccccCcch-------HHHHHHHHHhhccCCCCCceEEEEeCCCCChhHHHHHHHHH---HhcCCCeEEEEccccc
Q 028125 32 RVIFIGQNIDEEF-------SNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTM---QSLKSPVGTHCVGFAY 101 (213)
Q Consensus 32 ~iI~i~G~I~~~~-------~~~l~~~l~~l~~~~~~~~I~l~INSpGG~v~~~~~I~~~i---~~~~~~v~t~~~G~aa 101 (213)
.+|.++|+|.+.. ...+.+.|..+..+++.+.|+|.+|||||++.....++++| +.+++||++++.|.|+
T Consensus 3 ~v~~~~g~i~~~~~~~~~~~~~~l~~~l~~a~~d~~v~~ivL~~~s~Gg~~~~~~~~~~~l~~~~~~~kpVia~v~g~a~ 82 (211)
T cd07019 3 GVVFANGAIVDGEETQGNVGGDTTAAQIRDARLDPKVKAIVLRVNSPGGSVTASEVIRAELAAARAAGKPVVVSAGGAAA 82 (211)
T ss_pred EEEEEEEEEeCCCCCCCccCHHHHHHHHHHHhhCCCceEEEEEEcCCCcCHHHHHHHHHHHHHHHhCCCCEEEEECCeeh
Confidence 5788999987643 36789999988888889999999999999999998888765 5567899999999999
Q ss_pred hHHHHHHhcCCCCcEeeccCCeEEEeCCC------------------ccCC-C----------ChHHHHHHHHHHHHHHH
Q 028125 102 HLAGFLLAGGEKGNRSAMPLSRIALDSPA------------------GAAR-G----------QADDIRNEADELLRVRD 152 (213)
Q Consensus 102 Saa~~I~~ag~~~~r~~~p~s~i~iH~p~------------------~~~~-G----------~~~d~~~~~~~l~~~~~ 152 (213)
|+|++|+++||+ +++.|++.+...... .... | +.++-......++.+.+
T Consensus 83 s~gy~la~~aD~--i~a~~~a~~gsiGv~~~~~~~~~~l~k~Gv~~~~~~~~g~~k~~~~~~~s~e~r~~~~~~ld~~~~ 160 (211)
T cd07019 83 SGGYWISTPANY--IVANPSTLTGSIGIFGVITTVENSLDSIGVHTDGVSTSPLADVSITRALPPEAQLGLQLSIENGYK 160 (211)
T ss_pred hHHHHHHHhCCE--EEEcCCCEEEEeEEEEEcCCHHHHHHhcCCceEEEEecCcccCCCCCCCCHHHHHHHHHHHHHHHH
Confidence 999999999999 999999987532211 0001 2 11222233456788889
Q ss_pred HHHHHHHHHhCCCHHHHHHHhcCCceeCHHHHHHcCCceEecCCcccccc
Q 028125 153 YIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRIIRPPRIKED 202 (213)
Q Consensus 153 ~~~~~~a~~tg~~~~~i~~~~~~~~~~sa~EA~~~GLiD~I~~~~~~~~~ 202 (213)
.|.+.+++.++++++.+++..+ +.+|+++||+++||||+|++.+++.+.
T Consensus 161 ~f~~~Va~~R~~~~~~l~~~~~-~~~~~~~~A~~~GLvD~i~~~~~~~~~ 209 (211)
T cd07019 161 RFITLVADARHSTPEQIDKIAQ-GHVWTGQDAKANGLVDSLGDFDDAVAK 209 (211)
T ss_pred HHHHHHHhhCCCCHHHHHHhcC-CcEEeHHHHHHcCCcccCCCHHHHHHH
Confidence 9999999999999999998776 578999999999999999998876543
No 28
>cd07018 S49_SppA_67K_type Signal peptide peptidase A (SppA) 67K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 67K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily contain an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown that members in this subfamily, mostly bacterial, are serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys
Probab=99.84 E-value=3.7e-20 Score=154.96 Aligned_cols=159 Identities=14% Similarity=0.195 Sum_probs=130.6
Q ss_pred ccCcchHHHHHHHHHhhccCCCCCceEEEEeCCCCChhHHHHHHHHHHhc---CCCeEEEEccccchHHHHHHhcCCCCc
Q 028125 39 NIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSL---KSPVGTHCVGFAYHLAGFLLAGGEKGN 115 (213)
Q Consensus 39 ~I~~~~~~~l~~~l~~l~~~~~~~~I~l~INSpGG~v~~~~~I~~~i~~~---~~~v~t~~~G~aaSaa~~I~~ag~~~~ 115 (213)
..+..+...+++.|..+..+++.+.|+|.+|||||.+.+...|+++|+.+ ++||++++.+ |+|+||+|+++||+
T Consensus 25 ~~~~~~~~~l~~~l~~a~~d~~ik~vvL~~~s~gg~~~~~~el~~~i~~~~~~~kpVia~~~~-~~sggy~lasaad~-- 101 (222)
T cd07018 25 ESSELSLRDLLEALEKAAEDDRIKGIVLDLDGLSGGLAKLEELRQALERFRASGKPVIAYADG-YSQGQYYLASAADE-- 101 (222)
T ss_pred CcCCccHHHHHHHHHHHhcCCCeEEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCeEEEEeCC-CCchhhhhhhhCCE--
Confidence 34455678899999999888889999999999999999999999998654 5899999997 99999999999999
Q ss_pred EeeccCCeEEEeCCCcc------------------CCCC--------------hHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 028125 116 RSAMPLSRIALDSPAGA------------------ARGQ--------------ADDIRNEADELLRVRDYIFKELSRKTG 163 (213)
Q Consensus 116 r~~~p~s~i~iH~p~~~------------------~~G~--------------~~d~~~~~~~l~~~~~~~~~~~a~~tg 163 (213)
+++.|++.+++...... ..|. ..+-+...+.++.+.+.|.+.+++.++
T Consensus 102 I~a~p~~~vg~iGv~~~~~~~~~ll~klGv~~~~~~~G~~K~~~~~~~~~~~s~~~r~~~~~~l~~~~~~f~~~Va~~R~ 181 (222)
T cd07018 102 IYLNPSGSVELTGLSAETLFFKGLLDKLGVEVQVFRVGEYKSAVEPFTRDDMSPEAREQTQALLDSLWDQYLADVAASRG 181 (222)
T ss_pred EEECCCceEEeeccchhhhhHHHHHHHcCCcEEEEEEeccccccchhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 99999999887643210 1111 122223345677788999999999999
Q ss_pred CCHHHHHHHhcCCceeCHHHHHHcCCceEecCCccccc
Q 028125 164 QPFEKITKDLSRIKRFGSQEALEYGLIDRIIRPPRIKE 201 (213)
Q Consensus 164 ~~~~~i~~~~~~~~~~sa~EA~~~GLiD~I~~~~~~~~ 201 (213)
++.+.++++.+ ...|++++|++.||||+|+..+++.+
T Consensus 182 ~~~~~~~~~~~-~~~~~~~~A~~~GLvD~i~~~~e~~~ 218 (222)
T cd07018 182 LSPDALEALID-LGGDSAEEALEAGLVDGLAYRDELEA 218 (222)
T ss_pred CCHHHHHHHHH-cCCcHHHHHHHCCCCCcCCcHHHHHH
Confidence 99999998887 67889999999999999998877654
No 29
>PRK11778 putative inner membrane peptidase; Provisional
Probab=99.84 E-value=7e-20 Score=160.61 Aligned_cols=166 Identities=16% Similarity=0.129 Sum_probs=118.6
Q ss_pred CcEEEEccccCcchHHHHHHHHHhh-ccCCCCCceEEEEeCCCCChhHHHHHHH---HHHhcCCCeEEEEccccchHHHH
Q 028125 31 ERVIFIGQNIDEEFSNQILATMLYL-DSVDDSKRVYMYINGPGGDVTPTLAIYD---TMQSLKSPVGTHCVGFAYHLAGF 106 (213)
Q Consensus 31 ~~iI~i~G~I~~~~~~~l~~~l~~l-~~~~~~~~I~l~INSpGG~v~~~~~I~~---~i~~~~~~v~t~~~G~aaSaa~~ 106 (213)
-.+|.+.|.|+...+..+.+.+..+ ....+.+.|+|+||||||+|.++..++. .++..++||++++.+.|||+|||
T Consensus 92 v~VI~~~G~I~~~~~~~l~e~i~a~l~~A~~~~aVvLridSpGG~v~~s~~a~~~l~~lr~~~kpVva~v~~~AASggY~ 171 (330)
T PRK11778 92 LFVLDFKGDIDASEVESLREEITAILAVAKPGDEVLLRLESPGGVVHGYGLAASQLQRLRDAGIPLTVAVDKVAASGGYM 171 (330)
T ss_pred EEEEEEEEEECCCcchhhHHHHHHHHHhccCCCeEEEEEeCCCCchhHHHHHHHHHHHHHhcCCCEEEEECCchhhHHHH
Confidence 3568899999987654444444322 1222347899999999999987655554 45556689999999999999999
Q ss_pred HHhcCCCCcEeeccCCeEEEeCCCc------------------cCCC------------ChHHHHHHHHHHHHHHHHHHH
Q 028125 107 LLAGGEKGNRSAMPLSRIALDSPAG------------------AARG------------QADDIRNEADELLRVRDYIFK 156 (213)
Q Consensus 107 I~~ag~~~~r~~~p~s~i~iH~p~~------------------~~~G------------~~~d~~~~~~~l~~~~~~~~~ 156 (213)
|+|+||+ +++.|.+.++...... ...| +.++-+....+++.+.+.|.+
T Consensus 172 iAsaAD~--I~A~P~a~vGSIGVi~~~~~~~~lLeKlGI~~evi~aG~yK~a~~pf~~~see~Re~~q~~Ld~~y~~F~~ 249 (330)
T PRK11778 172 MACVADK--IIAAPFAIVGSIGVVAQIPNFHRLLKKHDIDVELHTAGEYKRTLTLFGENTEEGREKFREELEETHQLFKD 249 (330)
T ss_pred HHHhCCE--EEECCCCeEEeeeeeeeccCHHHHHHHCCCceEEEEecCccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999 9999999865322110 0111 122333445677888899999
Q ss_pred HHHHHhCCCHHHHHHHhcCCceeCHHHHHHcCCceEecCCccccc
Q 028125 157 ELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRIIRPPRIKE 201 (213)
Q Consensus 157 ~~a~~tg~~~~~i~~~~~~~~~~sa~EA~~~GLiD~I~~~~~~~~ 201 (213)
.+++.++ ...++++.+ +..|++++|+++||||+|++.+++.+
T Consensus 250 ~Va~~R~--~l~~~~va~-G~v~~g~~Al~~GLVD~Ig~~dd~i~ 291 (330)
T PRK11778 250 FVQRYRP--QLDIDKVAT-GEHWYGQQALELGLVDEIQTSDDYLL 291 (330)
T ss_pred HHHhcCC--cCCHHHHHh-CCCcCHHHHHHCCCCCcCCCHHHHHH
Confidence 9999875 223444445 46678999999999999999888653
No 30
>COG1030 NfeD Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=4.3e-19 Score=158.78 Aligned_cols=159 Identities=19% Similarity=0.222 Sum_probs=134.2
Q ss_pred cCcEEEEccccCcchHHHHHHHHHhhccCCCCCceEEEEeCCCCChhHHHHHHHHHHhcCCCeEEEEc---cccchHHHH
Q 028125 30 RERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCV---GFAYHLAGF 106 (213)
Q Consensus 30 ~~~iI~i~G~I~~~~~~~l~~~l~~l~~~~~~~~I~l~INSpGG~v~~~~~I~~~i~~~~~~v~t~~~---G~aaSaa~~ 106 (213)
...++.++|+|++.+++.+.+.|..++++ ....+.|.+|+|||.++++++|.++|.+++.||+.|+. ++|+|||+|
T Consensus 27 ~v~vi~i~g~I~~~s~~~l~r~l~~A~~~-~a~~vvl~ldTPGGl~~sm~~iv~~i~~s~vPV~~yv~p~ga~AaSAGty 105 (436)
T COG1030 27 KVYVIEIDGAIDPASADYLQRALQSAEEE-NAAAVVLELDTPGGLLDSMRQIVRAILNSPVPVIGYVVPDGARAASAGTY 105 (436)
T ss_pred eEEEEEecCccCHHHHHHHHHHHHHHHhC-CCcEEEEEecCCCchHHHHHHHHHHHHcCCCCEEEEEcCCCcchhchhhH
Confidence 34678899999999999999999877654 47899999999999999999999999999999888884 579999999
Q ss_pred HHhcCCCCcEeeccCCeEEEeCCCccCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhcCCceeCHHHHHH
Q 028125 107 LLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALE 186 (213)
Q Consensus 107 I~~ag~~~~r~~~p~s~i~iH~p~~~~~G~~~d~~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~~~~~~sa~EA~~ 186 (213)
|++++|. .+|.|.|.++-.+|........++- . ..+....+.+..++.+|++.+..+++.+++.-++++||.+
T Consensus 106 I~m~~hi--aaMAPgT~iGaa~Pi~~~g~~~~~~-~----~~n~~~ay~~~~A~~~gRN~~~ae~~v~~~~~l~a~eA~~ 178 (436)
T COG1030 106 ILMATHI--AAMAPGTNIGAATPIAGGGTSAKEA-N----TTNAAVAYIRSLAEERGRNPTWAERFVTENLSLTAEEALR 178 (436)
T ss_pred HHHhcCh--hhhCCCCcccccceecCCCCCccch-h----hHHHHHHHHHHHHHHcCCChHHHHHHhhhccCCChhHHHh
Confidence 9999999 9999999999999876542222221 1 1222234556678899999999999999999999999999
Q ss_pred cCCceEecCC
Q 028125 187 YGLIDRIIRP 196 (213)
Q Consensus 187 ~GLiD~I~~~ 196 (213)
.|+||-+..+
T Consensus 179 ~~vid~iA~~ 188 (436)
T COG1030 179 QGVIDLIARD 188 (436)
T ss_pred cCccccccCC
Confidence 9999988876
No 31
>PF01972 SDH_sah: Serine dehydrogenase proteinase; InterPro: IPR002825 This family of archaebacterial proteins, formerly known as DUF114, has been found to be a serine dehydrogenase proteinase distantly related to ClpP proteinases that belong to the serine proteinase superfamily. The family belong to MEROPS peptidase family S49; they are mostly unassigned peptidases but include the archaean signal peptide peptidase 1 []. The family has a catalytic triad of Ser, Asp, His residues, which shows an altered residue ordering compared with the ClpP proteinases but similar to that of the carboxypeptidase clan []. ; GO: 0016021 integral to membrane
Probab=99.75 E-value=6.3e-17 Score=137.26 Aligned_cols=158 Identities=20% Similarity=0.199 Sum_probs=115.2
Q ss_pred EccccCcchHHHHHHHHHhhccCCCCCceEEEEeCCCCChhHHHHHHHHHHhcCCCeEEEEccccchHHHHHHhcCCCCc
Q 028125 36 IGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGN 115 (213)
Q Consensus 36 i~G~I~~~~~~~l~~~l~~l~~~~~~~~I~l~INSpGG~v~~~~~I~~~i~~~~~~v~t~~~G~aaSaa~~I~~ag~~~~ 115 (213)
+...|+.+.++.+.+.++.. ++.++|.|.||||||.+.++..|.++|+.++.+++++|...|.|||++|+++||+
T Consensus 68 i~~~I~i~dse~v~raI~~~---~~~~~IdLii~TpGG~v~AA~~I~~~l~~~~~~v~v~VP~~A~SAGTlIALaADe-- 142 (285)
T PF01972_consen 68 IYRYIDIDDSEFVLRAIREA---PKDKPIDLIIHTPGGLVDAAEQIARALREHPAKVTVIVPHYAMSAGTLIALAADE-- 142 (285)
T ss_pred cceeEcHhhHHHHHHHHHhc---CCCCceEEEEECCCCcHHHHHHHHHHHHhCCCCEEEEECcccccHHHHHHHhCCe--
Confidence 34568888888898888754 4456899999999999999999999999999999999999999999999999999
Q ss_pred EeeccCCeEEEeCCCccCCC--------------ChHH----HHH-HHHHHHHHHHHHHHHHHHHhCCCHHHHHH---Hh
Q 028125 116 RSAMPLSRIALDSPAGAARG--------------QADD----IRN-EADELLRVRDYIFKELSRKTGQPFEKITK---DL 173 (213)
Q Consensus 116 r~~~p~s~i~iH~p~~~~~G--------------~~~d----~~~-~~~~l~~~~~~~~~~~a~~tg~~~~~i~~---~~ 173 (213)
++|.|+|.++--.|..+..- ..+| +.+ ..+.+.++++...+++.+ +++.++.++ .+
T Consensus 143 IvM~p~a~LGpiDPqi~~~pA~sil~~~~~K~~~~i~D~tlIladia~KAi~q~~~~v~~lL~~--~~~~eka~~ia~~L 220 (285)
T PF01972_consen 143 IVMGPGAVLGPIDPQIGQYPAASILKAVEQKPPDEIDDQTLILADIAEKAIRQVREFVKELLKD--KMDEEKAEEIAEKL 220 (285)
T ss_pred EEECCCCccCCCCccccCCChHHHHHHHHhccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHc--CCCHHHHHHHHHHh
Confidence 99999999998777653211 0111 011 123445555544555544 345554444 33
Q ss_pred -----cCCceeCHHHHHHcCCceEecCCcccc
Q 028125 174 -----SRIKRFGSQEALEYGLIDRIIRPPRIK 200 (213)
Q Consensus 174 -----~~~~~~sa~EA~~~GLiD~I~~~~~~~ 200 (213)
.+|+.+|.+||+++||==...-+.++-
T Consensus 221 ~~g~~tHdypi~~eea~~lGL~V~t~~p~ei~ 252 (285)
T PF01972_consen 221 SSGKWTHDYPITVEEAKELGLPVSTDMPEEIY 252 (285)
T ss_pred cCCCCCCCCCCCHHHHHHcCCCcCCCCcHHHH
Confidence 356779999999999965444444443
No 32
>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type. E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.
Probab=99.58 E-value=3.1e-14 Score=134.26 Aligned_cols=155 Identities=13% Similarity=0.094 Sum_probs=123.6
Q ss_pred hHHHHHHHHHhhccCCCCCceEEEEeC-CCCChhHHHHHHHHHHhc---CCCeEEEEccccchHHHHHHhcCCCCcEeec
Q 028125 44 FSNQILATMLYLDSVDDSKRVYMYING-PGGDVTPTLAIYDTMQSL---KSPVGTHCVGFAYHLAGFLLAGGEKGNRSAM 119 (213)
Q Consensus 44 ~~~~l~~~l~~l~~~~~~~~I~l~INS-pGG~v~~~~~I~~~i~~~---~~~v~t~~~G~aaSaa~~I~~ag~~~~r~~~ 119 (213)
....++++|+.+..+++.++|+|.+|+ |||.+....+|+++|+.. ++||+++... ++|++|||+++||+ +++.
T Consensus 77 ~l~~i~~~i~~A~~D~~IkgIvL~i~~~~g~~~~~~~ei~~ai~~fk~sgKpVvA~~~~-~~s~~YylAs~AD~--I~~~ 153 (584)
T TIGR00705 77 SLFDIVNAIRQAADDRRIEGLVFDLSNFSGWDSPHLVEIGSALSEFKDSGKPVYAYGTN-YSQGQYYLASFADE--IILN 153 (584)
T ss_pred CHHHHHHHHHHHhcCCCceEEEEEccCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEEcc-ccchhhhhhhhCCE--EEEC
Confidence 567899999999999999999999996 677888889999998865 4899998775 47999999999999 9999
Q ss_pred cCCeEEEeCCCc------------------cCCC--------------ChHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH
Q 028125 120 PLSRIALDSPAG------------------AARG--------------QADDIRNEADELLRVRDYIFKELSRKTGQPFE 167 (213)
Q Consensus 120 p~s~i~iH~p~~------------------~~~G--------------~~~d~~~~~~~l~~~~~~~~~~~a~~tg~~~~ 167 (213)
|.+.++++.... ...| +.++-+....+++.+.+.|.+.+++.|+++++
T Consensus 154 p~G~v~~~G~~~~~~~~k~~ldKlGV~~~v~r~G~yKsa~epf~r~~mS~e~re~~~~~l~~l~~~f~~~Va~~R~l~~~ 233 (584)
T TIGR00705 154 PMGSVDLHGFYTETLFYKGMLDKLGVRWHXFRVGTYKGAVEPFSRKDMSPEARRNYQRWLGELWQNYLSSVSRNRAIPVQ 233 (584)
T ss_pred CCceEEeeceecccccHHHHHHHcCCeEEEeeccccccccCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH
Confidence 999886553211 0111 12223334567888899999999999999999
Q ss_pred HHHHHhcCCce-------eCHHHHHHcCCceEecCCccccc
Q 028125 168 KITKDLSRIKR-------FGSQEALEYGLIDRIIRPPRIKE 201 (213)
Q Consensus 168 ~i~~~~~~~~~-------~sa~EA~~~GLiD~I~~~~~~~~ 201 (213)
++.+..+.-.| +++++|++.||||+++..+++.+
T Consensus 234 ~~~~~a~~~~~~~~~~~g~~a~~A~~~gLVD~l~~~de~~~ 274 (584)
T TIGR00705 234 QLAPYAQGLLELLQKLNGDGARYALAEKLVTAVCSYAEAGK 274 (584)
T ss_pred HHHHHHhHHHHHHHhhCCchHHHHHHCCCcccCCCHHHHHH
Confidence 99887764333 38999999999999998877543
No 33
>PF01343 Peptidase_S49: Peptidase family S49 peptidase classification.; InterPro: IPR002142 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S49 (protease IV family, clan S-). The predicted active site serine for members of this family occurs in a transmembrane domain. The domain defines sequences in viruses, archaea, bacteria and plants. These sequences are variously annotated in the different taxonomic groups, examples are: Viruses: capsid protein Archaea: proteinase IV homolog Bacteria: proteinase IV, sohB, SppA, pfaP, putative protease Plants: SppA, protease IV This group also contains proteins classified as non-peptidase homologues that either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity of peptidases. Related proteins, non-peptidase homologs and unclassified S49 members are also to be found in IPR002810 from INTERPRO.; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 3RST_B 3BEZ_D 3BF0_A.
Probab=99.55 E-value=5e-14 Score=111.62 Aligned_cols=114 Identities=21% Similarity=0.237 Sum_probs=85.3
Q ss_pred HHhcCCCeEEEEccccchHHHHHHhcCCCCcEeeccCCeEEEeCCCc------------------cCCC----------C
Q 028125 85 MQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAG------------------AARG----------Q 136 (213)
Q Consensus 85 i~~~~~~v~t~~~G~aaSaa~~I~~ag~~~~r~~~p~s~i~iH~p~~------------------~~~G----------~ 136 (213)
.++.++||++++.+.|+|++|+|+++||+ +++.|.+.++...... ...| .
T Consensus 2 ~~~~~KpV~a~~~~~~~S~~Y~lAs~ad~--I~~~p~s~vgsiGv~~~~~~~~~~l~k~GV~~~~~~~g~~K~~~~~~~~ 79 (154)
T PF01343_consen 2 FKASGKPVVAYAEGYAASGAYYLASAADE--IYANPSSSVGSIGVSAERLFFKGLLEKLGVKVEVVRSGEYKSAGFPRDP 79 (154)
T ss_dssp HHHTT--EEEEEEEEEETHHHHHHTTSSE--EEE-TT-EEE---EEEEEEE-HHHHHHTT-EEEEEESSTTCCCCCTTSS
T ss_pred ccccCCeEEEEECCcchhHHHHHHHcCCE--EEecCCCEEEEeChhhccccHHHHHHHCCCeEEEEecCccccccCcCCC
Confidence 46778999999999999999999999999 9999999876432210 0011 1
Q ss_pred --hHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhcCCceeCHHHHHHcCCceEecCCccccc
Q 028125 137 --ADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRIIRPPRIKE 201 (213)
Q Consensus 137 --~~d~~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~~~~~~sa~EA~~~GLiD~I~~~~~~~~ 201 (213)
.++-+...+.++.+.+.|.+.+++.++++.++++++.+. ..|++++|+++||||+|++.+++..
T Consensus 80 ~s~~~r~~~~~~l~~~~~~f~~~Va~~R~~~~~~v~~~~~~-~~~~~~~A~~~GLiD~i~~~~~~~~ 145 (154)
T PF01343_consen 80 MSEEERENLQELLDELYDQFVNDVAEGRGLSPDDVEEIADG-GVFTAQQALELGLIDEIGTFDEAIA 145 (154)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHTS-HHHHHCHHCC-HEEEHHHHHHTTSSSEETSHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHhh-ccccHHHHHHcCchhhcCCHHHHHH
Confidence 223333456788888999999999999999999998875 8889999999999999998877653
No 34
>PRK10949 protease 4; Provisional
Probab=99.51 E-value=2.2e-13 Score=128.84 Aligned_cols=154 Identities=12% Similarity=0.077 Sum_probs=118.4
Q ss_pred HHHHHHHHHhhccCCCCCceEEEEeCCCCChhH-HHHHHHHHHhc---CCCeEEEEccccchHHHHHHhcCCCCcEeecc
Q 028125 45 SNQILATMLYLDSVDDSKRVYMYINGPGGDVTP-TLAIYDTMQSL---KSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMP 120 (213)
Q Consensus 45 ~~~l~~~l~~l~~~~~~~~I~l~INSpGG~v~~-~~~I~~~i~~~---~~~v~t~~~G~aaSaa~~I~~ag~~~~r~~~p 120 (213)
...+++.|+.+..+++.++|+|.+|||||...+ ...|+++|+.. ++||+++ ...++|++|||+++||+ +++.|
T Consensus 97 l~div~~i~~Aa~D~rIkgivL~i~s~gG~~~a~~~eI~~ai~~fk~sGKpVvA~-~~~~~s~~YyLASaAD~--I~l~P 173 (618)
T PRK10949 97 LFDIVNTIRQAKDDRNITGIVLDLKNFAGADQPSMQYIGKALREFRDSGKPVYAV-GDSYSQGQYYLASFANK--IYLSP 173 (618)
T ss_pred HHHHHHHHHHHhcCCCceEEEEEeCCCCCccHHHHHHHHHHHHHHHHhCCeEEEE-ecCccchhhhhhhhCCE--EEECC
Confidence 357889999998899999999999999887654 47899988765 4799997 56668999999999999 99999
Q ss_pred CCeEEEeCCCcc------------------CCC--------------ChHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHH
Q 028125 121 LSRIALDSPAGA------------------ARG--------------QADDIRNEADELLRVRDYIFKELSRKTGQPFEK 168 (213)
Q Consensus 121 ~s~i~iH~p~~~------------------~~G--------------~~~d~~~~~~~l~~~~~~~~~~~a~~tg~~~~~ 168 (213)
.+.++++..... ..| +.++-+....+++.+.+.|.+.+++.++++++.
T Consensus 174 ~G~v~~~G~~~~~~~~k~lLdKlGV~~~v~r~G~yKsA~epf~r~~mS~e~Re~~~~ll~~l~~~f~~~VA~~R~l~~~~ 253 (618)
T PRK10949 174 QGVVDLHGFATNGLYYKSLLDKLKVSTHVFRVGTYKSAVEPFIRDDMSPAAREADSRWIGELWQNYLNTVAANRQITPQQ 253 (618)
T ss_pred CceEEEeeeecchhhHHHHHHHcCCeEEEEEecCCCCCCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH
Confidence 998876543210 111 112223345678888899999999999999998
Q ss_pred HHHHhc----C---CceeCHHHHHHcCCceEecCCccccc
Q 028125 169 ITKDLS----R---IKRFGSQEALEYGLIDRIIRPPRIKE 201 (213)
Q Consensus 169 i~~~~~----~---~~~~sa~EA~~~GLiD~I~~~~~~~~ 201 (213)
+....+ . .-.+++++|++.||||+++..+++.+
T Consensus 254 v~~~a~~~~~~l~~~~~~~a~~Al~~GLVD~l~~~de~~~ 293 (618)
T PRK10949 254 LFPGAQGILEGLTKVGGDTAKYALDNKLVDALASSAEIEK 293 (618)
T ss_pred HHHHHHHHHHhhhhcCCccHHHHHHCCCCCcCCCHHHHHH
Confidence 854332 1 12358999999999999998877543
No 35
>cd06558 crotonase-like Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily. This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase. Many of these play important roles in fatty acid metabolism. In addition to a conserved structural core and the formation of trimers (or dimers of trimers), a common feature in this superfamily is the stabilization of an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two conserved backbone NH groups in active sites that form an oxyanion hole.
Probab=99.17 E-value=5.9e-10 Score=90.53 Aligned_cols=150 Identities=17% Similarity=0.154 Sum_probs=103.6
Q ss_pred cEEEEccc-----cCcchHHHHHHHHHhhccCCCCCceEEEEe----CCCCChh-----------------HHHHHHHHH
Q 028125 32 RVIFIGQN-----IDEEFSNQILATMLYLDSVDDSKRVYMYIN----GPGGDVT-----------------PTLAIYDTM 85 (213)
Q Consensus 32 ~iI~i~G~-----I~~~~~~~l~~~l~~l~~~~~~~~I~l~IN----SpGG~v~-----------------~~~~I~~~i 85 (213)
.+|.++.+ ++..+.+.+.+.+..++.+++.+.|+|.=+ |.|+++. ....++..|
T Consensus 10 ~~i~l~~~~~~N~~~~~~~~~l~~~l~~~~~d~~~~~vvl~~~~~~Fs~G~dl~~~~~~~~~~~~~~~~~~~~~~~~~~i 89 (195)
T cd06558 10 ATITLNRPEKRNALSLEMLDELAAALDEAEADPDVRVVVLTGAGKAFCAGADLKELAALSDAGEEARAFIRELQELLRAL 89 (195)
T ss_pred EEEEECCccccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCceEeCcCHHHHhcccccchhHHHHHHHHHHHHHHH
Confidence 34666655 455667888888888877666666666654 5555543 224566777
Q ss_pred HhcCCCeEEEEccccchHHHHHHhcCCCCcEeeccCCeEEEeCCCccCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 028125 86 QSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQP 165 (213)
Q Consensus 86 ~~~~~~v~t~~~G~aaSaa~~I~~ag~~~~r~~~p~s~i~iH~p~~~~~G~~~d~~~~~~~l~~~~~~~~~~~a~~tg~~ 165 (213)
..+++|+++.+.|.|.++|..++++||. |++.+++.|.+.....+..-..- ....+.+. . .
T Consensus 90 ~~~~~p~Ia~v~G~a~g~G~~la~~~D~--~i~~~~~~~~~pe~~~G~~p~~g-------~~~~l~~~--------~--g 150 (195)
T cd06558 90 LRLPKPVIAAVNGAALGGGLELALACDI--RIAAEDAKFGLPEVKLGLVPGGG-------GTQRLPRL--------V--G 150 (195)
T ss_pred HcCCCCEEEEECCeeecHHHHHHHhCCE--EEecCCCEEechhhhcCCCCCCc-------HHHHHHHH--------h--C
Confidence 7889999999999999999999999998 99999999987665543210000 01111111 1 2
Q ss_pred HHHHHHHhcCCceeCHHHHHHcCCceEecCCcccc
Q 028125 166 FEKITKDLSRIKRFGSQEALEYGLIDRIIRPPRIK 200 (213)
Q Consensus 166 ~~~i~~~~~~~~~~sa~EA~~~GLiD~I~~~~~~~ 200 (213)
.....+++-.++.++++||+++||+|++....+..
T Consensus 151 ~~~a~~~~l~g~~~~a~ea~~~Glv~~~~~~~~l~ 185 (195)
T cd06558 151 PARARELLLTGRRISAEEALELGLVDEVVPDEELL 185 (195)
T ss_pred HHHHHHHHHcCCccCHHHHHHcCCCCeecChhHHH
Confidence 33344445457889999999999999999875543
No 36
>COG3904 Predicted periplasmic protein [Function unknown]
Probab=99.04 E-value=2.9e-09 Score=87.16 Aligned_cols=154 Identities=14% Similarity=0.148 Sum_probs=107.1
Q ss_pred cEEEEccccCcchHHHHHHHHHhhccCCCCCceEEEEeCCCCChhHHHHHHHHHHhcCCCeEEEEccccchHHHHHHhcC
Q 028125 32 RVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGG 111 (213)
Q Consensus 32 ~iI~i~G~I~~~~~~~l~~~l~~l~~~~~~~~I~l~INSpGG~v~~~~~I~~~i~~~~~~v~t~~~G~aaSaa~~I~~ag 111 (213)
.-+.+++++-+-.+...+..+. ++.+..-..-+.+|||||++..++++-..|++.+..+..--..+|+|++.++|++|
T Consensus 77 l~VvVse~~a~~da~sal~~li--r~~G~y~~t~v~lnSpGGsv~kA~~mgkLiRe~gfdt~v~s~A~CasaCpl~fagG 154 (245)
T COG3904 77 LPVVVSEPGANVDAASALGRLI--RKAGLYIATGVTLNSPGGSVAKACSMGKLIREDGFDTAVDSGAMCASACPLMFAGG 154 (245)
T ss_pred eeEEEcCCCCCccHHHHHHHHH--hccCceeEEEEEecCCCCcHHHHHhhhhhhhhcccCccccchhhhhccchhhhhcc
Confidence 3455677776654544455544 22222223347899999999999999999999998888888899999999999999
Q ss_pred CCCcEeeccCCeEEEeCCCccCCCC-hHHHHHHHHHHHHH-HHHHHHHHHHHhCCCHHHHHHHh----cCCceeCHHHHH
Q 028125 112 EKGNRSAMPLSRIALDSPAGAARGQ-ADDIRNEADELLRV-RDYIFKELSRKTGQPFEKITKDL----SRIKRFGSQEAL 185 (213)
Q Consensus 112 ~~~~r~~~p~s~i~iH~p~~~~~G~-~~d~~~~~~~l~~~-~~~~~~~~a~~tg~~~~~i~~~~----~~~~~~sa~EA~ 185 (213)
.. |++.+.+.+++|++.+...-. .... +++..+.. ..+ ...|-...|..+--+..+. ++-++++.+|..
T Consensus 155 vr--Rvve~~ayiGVHq~~~~g~~~r~~~~--~a~Sanq~~tar-~a~ylrEMgigpgLlq~ml~tpp~dir~l~~kem~ 229 (245)
T COG3904 155 VR--RVVEDFAYIGVHQITTTGRRERIVNG--KAKSANQKVTAR-LAAYLREMGIGPGLLQMMLATPPSDIRQLGLKEMT 229 (245)
T ss_pred ee--eeecccceeeeeeccccCCccccCcH--hhhhhhhhhHHH-HHHHHHHcCCCHHHHHHHhcCChHhhhhhhHHHHh
Confidence 88 999999999999998753321 1111 11111111 111 2335556788887776555 345889999999
Q ss_pred HcCCceE
Q 028125 186 EYGLIDR 192 (213)
Q Consensus 186 ~~GLiD~ 192 (213)
++.|..+
T Consensus 230 ~~~L~t~ 236 (245)
T COG3904 230 AMKLVTS 236 (245)
T ss_pred hhccccc
Confidence 9998764
No 37
>PRK05869 enoyl-CoA hydratase; Validated
Probab=99.02 E-value=9.3e-09 Score=86.11 Aligned_cols=150 Identities=18% Similarity=0.258 Sum_probs=100.7
Q ss_pred cEEEEccc----cCcchHHHHHHHHHhhccCCCCCceEEEEe----CCCCChhHH---------------HHHHHHHHhc
Q 028125 32 RVIFIGQN----IDEEFSNQILATMLYLDSVDDSKRVYMYIN----GPGGDVTPT---------------LAIYDTMQSL 88 (213)
Q Consensus 32 ~iI~i~G~----I~~~~~~~l~~~l~~l~~~~~~~~I~l~IN----SpGG~v~~~---------------~~I~~~i~~~ 88 (213)
.+|+++.+ ++.++...+.+.+..++.+++.+.|+|.=+ |.|+++... ..+++.|..+
T Consensus 19 ~~itlnrp~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 98 (222)
T PRK05869 19 ATLLLSRPPTNALTRQVYREIVAAANELGRRDDVAAVILYGGHEIFSAGDDMPELRTLSAQEADTAARVRQQAVDAVAAI 98 (222)
T ss_pred EEEEECCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCcCcCcCHHHHhccChhhHHHHHHHHHHHHHHHHhC
Confidence 34667766 666677888888888877666666555311 234443321 2456678889
Q ss_pred CCCeEEEEccccchHHHHHHhcCCCCcEeeccCCeEEEeCCCccCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHH
Q 028125 89 KSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEK 168 (213)
Q Consensus 89 ~~~v~t~~~G~aaSaa~~I~~ag~~~~r~~~p~s~i~iH~p~~~~~G~~~d~~~~~~~l~~~~~~~~~~~a~~tg~~~~~ 168 (213)
++||++.+.|.|..+|.-++++||. |++.+++.|.+.....+.....-- ...+ .+. +....
T Consensus 99 ~kPvIAav~G~a~GgG~~lalacD~--ria~~~a~f~~pe~~~Gl~p~~g~-------~~~l--------~~~--ig~~~ 159 (222)
T PRK05869 99 PKPTVAAITGYALGAGLTLALAADW--RVSGDNVKFGATEILAGLAPSGDG-------MARL--------TRA--AGPSR 159 (222)
T ss_pred CCCEEEEEcCEeecHHHHHHHhCCE--EEecCCCEEcCchhccCCCCCccH-------HHHH--------HHH--hCHHH
Confidence 9999999999999999999999998 999999988765444332110000 0111 111 22334
Q ss_pred HHHHhcCCceeCHHHHHHcCCceEecCCcccc
Q 028125 169 ITKDLSRIKRFGSQEALEYGLIDRIIRPPRIK 200 (213)
Q Consensus 169 i~~~~~~~~~~sa~EA~~~GLiD~I~~~~~~~ 200 (213)
..+++-.+.+++++||+++||+|++...+++.
T Consensus 160 a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~ 191 (222)
T PRK05869 160 AKELVFSGRFFDAEEALALGLIDEMVAPDDVY 191 (222)
T ss_pred HHHHHHcCCCcCHHHHHHCCCCCEeeCchHHH
Confidence 45555556789999999999999999876643
No 38
>PRK06495 enoyl-CoA hydratase; Provisional
Probab=99.00 E-value=1.2e-08 Score=87.18 Aligned_cols=146 Identities=15% Similarity=0.145 Sum_probs=101.7
Q ss_pred cEEEEccc----cCcchHHHHHHHHHhhccCCCCCceEEEEe----CCCCChhHH-----------------HHHHHHHH
Q 028125 32 RVIFIGQN----IDEEFSNQILATMLYLDSVDDSKRVYMYIN----GPGGDVTPT-----------------LAIYDTMQ 86 (213)
Q Consensus 32 ~iI~i~G~----I~~~~~~~l~~~l~~l~~~~~~~~I~l~IN----SpGG~v~~~-----------------~~I~~~i~ 86 (213)
.+|+|+.+ ++.++...+.+.+..++.+++.+.|+|.=+ |.|+++... ..+++.|.
T Consensus 15 ~~itlnrp~~Nal~~~~~~~l~~al~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 94 (257)
T PRK06495 15 AVVTLDNPPVNALSRELRDELIAVFDEISERPDVRVVVLTGAGKVFCAGADLKGRPDVIKGPGDLRAHNRRTRECFHAIR 94 (257)
T ss_pred EEEEECCCccccCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCCcccCcCHHhHhhccCCchhHHHHHHHHHHHHHHHH
Confidence 35777776 666777888888888776665665555311 233343220 23456688
Q ss_pred hcCCCeEEEEccccchHHHHHHhcCCCCcEeeccCCeEEEeCCCccCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCCCH
Q 028125 87 SLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPF 166 (213)
Q Consensus 87 ~~~~~v~t~~~G~aaSaa~~I~~ag~~~~r~~~p~s~i~iH~p~~~~~G~~~d~~~~~~~l~~~~~~~~~~~a~~tg~~~ 166 (213)
.+++||++.+.|.|..+|.-++++||. |++.++++|.+.....+..|... .+ .+. ...
T Consensus 95 ~~~kPvIAav~G~a~GgG~~lalacD~--~ia~~~a~f~~pe~~~Gl~~~~~----------~l--------~~~--~g~ 152 (257)
T PRK06495 95 ECAKPVIAAVNGPALGAGLGLVASCDI--IVASENAVFGLPEIDVGLAGGGK----------HA--------MRL--FGH 152 (257)
T ss_pred hCCCCEEEEECCeeehhHHHHHHhCCE--EEecCCCEeeChhhccCccccHH----------HH--------HHH--hCH
Confidence 889999999999999999999999998 99999999887555544432211 01 111 234
Q ss_pred HHHHHHhcCCceeCHHHHHHcCCceEecCCccc
Q 028125 167 EKITKDLSRIKRFGSQEALEYGLIDRIIRPPRI 199 (213)
Q Consensus 167 ~~i~~~~~~~~~~sa~EA~~~GLiD~I~~~~~~ 199 (213)
....+++-.+..++++||+++||||+|...++.
T Consensus 153 ~~a~~lll~g~~~~a~eA~~~GLv~~vv~~~~~ 185 (257)
T PRK06495 153 SLTRRMMLTGYRVPAAELYRRGVIEACLPPEEL 185 (257)
T ss_pred HHHHHHHHcCCeeCHHHHHHcCCcceecCHHHH
Confidence 445555556788999999999999999876653
No 39
>PRK08258 enoyl-CoA hydratase; Provisional
Probab=98.98 E-value=1.7e-08 Score=87.09 Aligned_cols=148 Identities=16% Similarity=0.178 Sum_probs=98.6
Q ss_pred EEEEccc-----cCcchHHHHHHHHHhhccCCCCCceEEEEe----CCCCChhHH-------------------HHHHHH
Q 028125 33 VIFIGQN-----IDEEFSNQILATMLYLDSVDDSKRVYMYIN----GPGGDVTPT-------------------LAIYDT 84 (213)
Q Consensus 33 iI~i~G~-----I~~~~~~~l~~~l~~l~~~~~~~~I~l~IN----SpGG~v~~~-------------------~~I~~~ 84 (213)
+|.|+-+ ++.++...+.+.+..++.+++.+.|+|.=+ |-|+++... ..+++.
T Consensus 29 ~itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~vr~vVltg~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (277)
T PRK08258 29 TITLNRPERKNPLTFESYAELRDLFRELVYADDVKAVVLTGAGGNFCSGGDVHEIIGPLTKMDMPELLAFTRMTGDLVKA 108 (277)
T ss_pred EEEeCCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEeCCCCCcccccCHHHHhccccccChhHHHHHHHHHHHHHHH
Confidence 4566654 566667788888887766555555544211 344554321 245677
Q ss_pred HHhcCCCeEEEEccccchHHHHHHhcCCCCcEeeccCCeEEEeCCCccCC-CChHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 028125 85 MQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAAR-GQADDIRNEADELLRVRDYIFKELSRKTG 163 (213)
Q Consensus 85 i~~~~~~v~t~~~G~aaSaa~~I~~ag~~~~r~~~p~s~i~iH~p~~~~~-G~~~d~~~~~~~l~~~~~~~~~~~a~~tg 163 (213)
|..+++||++.+.|.|..+|.-++++||. |++.++++|.+.....+.. ...-- ...+.+.
T Consensus 109 l~~~~kPvIAaV~G~a~GgG~~LalacD~--ria~~~a~f~~pe~~~Gl~p~~~g~-------~~~l~~~---------- 169 (277)
T PRK08258 109 MRACPQPIIAAVDGVCAGAGAILAMASDL--RLGTPSAKTAFLFTRVGLAGADMGA-------CALLPRI---------- 169 (277)
T ss_pred HHhCCCCEEEEECCeeehHHHHHHHhCCE--EEecCCCEEeccccccCcCCCCchH-------HHHHHHH----------
Confidence 88899999999999999999999999998 9999999998766654432 11100 0111111
Q ss_pred CCHHHHHHHhcCCceeCHHHHHHcCCceEecCCccc
Q 028125 164 QPFEKITKDLSRIKRFGSQEALEYGLIDRIIRPPRI 199 (213)
Q Consensus 164 ~~~~~i~~~~~~~~~~sa~EA~~~GLiD~I~~~~~~ 199 (213)
+......+++-.+..++++||+++||||+|....+.
T Consensus 170 vG~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l 205 (277)
T PRK08258 170 IGQGRASELLYTGRSMSAEEGERWGFFNRLVEPEEL 205 (277)
T ss_pred hCHHHHHHHHHcCCCCCHHHHHHcCCCcEecCHHHH
Confidence 122334444545678999999999999999876543
No 40
>PRK07511 enoyl-CoA hydratase; Provisional
Probab=98.98 E-value=1.5e-08 Score=86.61 Aligned_cols=149 Identities=11% Similarity=0.079 Sum_probs=100.3
Q ss_pred cEEEEccc-----cCcchHHHHHHHHHhhccCCCCCceEEEEe----CCCCChhH------------------HHHHHHH
Q 028125 32 RVIFIGQN-----IDEEFSNQILATMLYLDSVDDSKRVYMYIN----GPGGDVTP------------------TLAIYDT 84 (213)
Q Consensus 32 ~iI~i~G~-----I~~~~~~~l~~~l~~l~~~~~~~~I~l~IN----SpGG~v~~------------------~~~I~~~ 84 (213)
.+|+++.+ ++.++.+.+.+.+..++.+++.+.|+|.=+ |.|+++.. ...++..
T Consensus 14 ~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (260)
T PRK07511 14 LVLTLSNPGARNALHPDMYAAGIEALNTAERDPSIRAVVLTGAGGFFCAGGNLNRLLENRAKPPSVQAASIDGLHDWIRA 93 (260)
T ss_pred EEEEECCcccccCCCHHHHHHHHHHHHHhccCCCeEEEEEECCCCCcccCcCHHHHhhcccccchhHHHHHHHHHHHHHH
Confidence 34677765 667777888888888776665565555311 33444322 1235566
Q ss_pred HHhcCCCeEEEEccccchHHHHHHhcCCCCcEeeccCCeEEEeCCCccCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 028125 85 MQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQ 164 (213)
Q Consensus 85 i~~~~~~v~t~~~G~aaSaa~~I~~ag~~~~r~~~p~s~i~iH~p~~~~~G~~~d~~~~~~~l~~~~~~~~~~~a~~tg~ 164 (213)
|..+++||++.+.|.|..+|..++++||. |++.++++|.+.....+..-..-- ...+.+. +
T Consensus 94 l~~~~kpvIAav~G~a~GgG~~lala~D~--~ia~~~a~f~~pe~~~Gl~p~~g~-------~~~l~~~----------v 154 (260)
T PRK07511 94 IRAFPKPVIAAVEGAAAGAGFSLALACDL--LVAARDAKFVMAYVKVGLTPDGGG-------SWFLARA----------L 154 (260)
T ss_pred HHcCCCCEEEEECCeeehHHHHHHHhCCE--EEeeCCCEEeccccccCcCCCchH-------HHHHHHH----------h
Confidence 77889999999999999999999999998 999999998875544432111000 0011111 2
Q ss_pred CHHHHHHHhcCCceeCHHHHHHcCCceEecCCccc
Q 028125 165 PFEKITKDLSRIKRFGSQEALEYGLIDRIIRPPRI 199 (213)
Q Consensus 165 ~~~~i~~~~~~~~~~sa~EA~~~GLiD~I~~~~~~ 199 (213)
......+++-.+..|+++||+++||||+|.+.++.
T Consensus 155 g~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~~ 189 (260)
T PRK07511 155 PRQLATELLLEGKPISAERLHALGVVNRLAEPGQA 189 (260)
T ss_pred CHHHHHHHHHhCCCCCHHHHHHcCCccEeeCchHH
Confidence 33444555555678999999999999999987653
No 41
>PRK06688 enoyl-CoA hydratase; Provisional
Probab=98.98 E-value=1.3e-08 Score=86.73 Aligned_cols=148 Identities=15% Similarity=0.140 Sum_probs=99.6
Q ss_pred EEEEccc-----cCcchHHHHHHHHHhhccCCCCCceEEE----EeCCCCChhH--------------HHHHHHHHHhcC
Q 028125 33 VIFIGQN-----IDEEFSNQILATMLYLDSVDDSKRVYMY----INGPGGDVTP--------------TLAIYDTMQSLK 89 (213)
Q Consensus 33 iI~i~G~-----I~~~~~~~l~~~l~~l~~~~~~~~I~l~----INSpGG~v~~--------------~~~I~~~i~~~~ 89 (213)
+|+++-+ ++.++.+.+.+.+..++.+++.+.|+|. .=|.|+++.. ...+++.|..++
T Consensus 17 ~i~lnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 96 (259)
T PRK06688 17 TITINRPDKKNALTAAMYQALADALEAAATDPAVRVVVLTGAGRAFSAGGDIKDFPKAPPKPPDELAPVNRFLRAIAALP 96 (259)
T ss_pred EEEecCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCccCccCHHHHhccCcchHHHHHHHHHHHHHHHcCC
Confidence 4566655 6777788888888888766656666654 1244444422 234667788889
Q ss_pred CCeEEEEccccchHHHHHHhcCCCCcEeeccCCeEEEeCCCccCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHH
Q 028125 90 SPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKI 169 (213)
Q Consensus 90 ~~v~t~~~G~aaSaa~~I~~ag~~~~r~~~p~s~i~iH~p~~~~~G~~~d~~~~~~~l~~~~~~~~~~~a~~tg~~~~~i 169 (213)
+|+++.+.|.|..+|..++++||. |++.++++|.+.....+.....-- ...+.+. . .....
T Consensus 97 kp~Iaav~G~a~GgG~~lal~cD~--ria~~~a~f~~pe~~~G~~p~~g~-------~~~l~~~--------~--G~~~a 157 (259)
T PRK06688 97 KPVVAAVNGPAVGVGVSLALACDL--VYASESAKFSLPFAKLGLCPDAGG-------SALLPRL--------I--GRARA 157 (259)
T ss_pred CCEEEEECCeeecHHHHHHHhCCE--EEecCCCEecCchhhcCCCCCcch-------hhHHHHH--------h--hHHHH
Confidence 999999999999999999999998 999999999876544432111000 0111111 1 12233
Q ss_pred HHHhcCCceeCHHHHHHcCCceEecCCccc
Q 028125 170 TKDLSRIKRFGSQEALEYGLIDRIIRPPRI 199 (213)
Q Consensus 170 ~~~~~~~~~~sa~EA~~~GLiD~I~~~~~~ 199 (213)
.+++-.+..|+++||+++||||+|...+++
T Consensus 158 ~~l~l~g~~~~a~eA~~~Glv~~v~~~~~l 187 (259)
T PRK06688 158 AEMLLLGEPLSAEEALRIGLVNRVVPAAEL 187 (259)
T ss_pred HHHHHhCCccCHHHHHHcCCcceecCHHHH
Confidence 444444677999999999999999876543
No 42
>PRK06143 enoyl-CoA hydratase; Provisional
Probab=98.95 E-value=2.2e-08 Score=85.49 Aligned_cols=148 Identities=16% Similarity=0.168 Sum_probs=100.5
Q ss_pred cEEEEccc-----cCcchHHHHHHHHHhhccCCCCCceEEEEe-----CCCCChhH---------------HHHHHHHHH
Q 028125 32 RVIFIGQN-----IDEEFSNQILATMLYLDSVDDSKRVYMYIN-----GPGGDVTP---------------TLAIYDTMQ 86 (213)
Q Consensus 32 ~iI~i~G~-----I~~~~~~~l~~~l~~l~~~~~~~~I~l~IN-----SpGG~v~~---------------~~~I~~~i~ 86 (213)
.+|.++-+ ++.++...+.+.+..++.+++.+.|+|.=+ |.|+++.. ...+++.|.
T Consensus 18 ~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~ 97 (256)
T PRK06143 18 ATLTIRNAGSLNILGTPVILALTQALRWLAADPDVRVLVLRGAGEKAFIGGADIKEMATLDQASAEAFISRLRDLCDAVR 97 (256)
T ss_pred EEEEEcCCcccCCCCHHHHHHHHHHHHHHhcCCCcEEEEEEeCCCCcccCCcCHHHHhhcChhhHHHHHHHHHHHHHHHH
Confidence 45677655 667778888888888876665665555321 33444432 123556777
Q ss_pred hcCCCeEEEEccccchHHHHHHhcCCCCcEeeccCCeEEEeCCCccCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCCCH
Q 028125 87 SLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPF 166 (213)
Q Consensus 87 ~~~~~v~t~~~G~aaSaa~~I~~ag~~~~r~~~p~s~i~iH~p~~~~~G~~~d~~~~~~~l~~~~~~~~~~~a~~tg~~~ 166 (213)
.+++||++.+.|.|..+|.-++++||. |++.++++|.+-....+. +... . ... +.+. +..
T Consensus 98 ~~~kPvIAav~G~a~GgG~~lalacD~--~ia~~~a~f~~pe~~~G~---p~~~-~----~~~--------l~~~--iG~ 157 (256)
T PRK06143 98 HFPVPVIARIPGWCLGGGLELAAACDL--RIAAHDAQFGMPEVRVGI---PSVI-H----AAL--------LPRL--IGW 157 (256)
T ss_pred hCCCCEEEEECCEEeehhHHHHHhCCE--EEecCCCEEeCCccccCC---CCcc-H----HHH--------HHHh--cCH
Confidence 889999999999999999999999998 999999998764443332 1110 0 001 1112 233
Q ss_pred HHHHHHhcCCceeCHHHHHHcCCceEecCCccc
Q 028125 167 EKITKDLSRIKRFGSQEALEYGLIDRIIRPPRI 199 (213)
Q Consensus 167 ~~i~~~~~~~~~~sa~EA~~~GLiD~I~~~~~~ 199 (213)
....+++-.+..++++||+++||||+|...++.
T Consensus 158 ~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l 190 (256)
T PRK06143 158 ARTRWLLLTGETIDAAQALAWGLVDRVVPLAEL 190 (256)
T ss_pred HHHHHHHHcCCcCCHHHHHHCCCcCeecCHHHH
Confidence 444555555788999999999999999986654
No 43
>PRK03580 carnitinyl-CoA dehydratase; Provisional
Probab=98.95 E-value=2.2e-08 Score=85.67 Aligned_cols=149 Identities=17% Similarity=0.182 Sum_probs=98.5
Q ss_pred cEEEEccc----cCcchHHHHHHHHHhhccCCCCCceEEEE-----eCCCCChhH--------------HHHHHHHHHhc
Q 028125 32 RVIFIGQN----IDEEFSNQILATMLYLDSVDDSKRVYMYI-----NGPGGDVTP--------------TLAIYDTMQSL 88 (213)
Q Consensus 32 ~iI~i~G~----I~~~~~~~l~~~l~~l~~~~~~~~I~l~I-----NSpGG~v~~--------------~~~I~~~i~~~ 88 (213)
.+|+++.+ ++.++.+.+.+.+..++.+++.+.|+|.= =|.|+++.. ...++..|..+
T Consensus 14 ~~itlnrp~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~l~~~ 93 (261)
T PRK03580 14 LEITLDRPKANAIDAKTSFAMGEVFLNFRDDPELRVAIITGAGEKFFSAGWDLKAAAEGEAPDADFGPGGFAGLTEIFDL 93 (261)
T ss_pred EEEEECCccccCCCHHHHHHHHHHHHHHHhCCCcEEEEEEeCCCCceecccCHHHHhccCcchhhhhhhhhHHHHHHHhC
Confidence 45677776 55566778888888777665555555531 144455432 12345678888
Q ss_pred CCCeEEEEccccchHHHHHHhcCCCCcEeeccCCeEEEeCCCccCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHH
Q 028125 89 KSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEK 168 (213)
Q Consensus 89 ~~~v~t~~~G~aaSaa~~I~~ag~~~~r~~~p~s~i~iH~p~~~~~G~~~d~~~~~~~l~~~~~~~~~~~a~~tg~~~~~ 168 (213)
++||++.+.|.|..+|.-++++||. |++.+++.|.+-....+.. .+... ...+.+. +....
T Consensus 94 ~kPvIaav~G~a~GgG~~lalacD~--~ia~~~a~f~~pe~~~G~~---p~~g~----~~~l~~~----------vg~~~ 154 (261)
T PRK03580 94 DKPVIAAVNGYAFGGGFELALAADF--IVCADNASFALPEAKLGIV---PDSGG----VLRLPKR----------LPPAI 154 (261)
T ss_pred CCCEEEEECCeeehHHHHHHHHCCE--EEecCCCEEeCcccccCcC---CCccH----HHHHHHH----------hCHHH
Confidence 9999999999999999999999998 9999999887544333221 01000 0111111 12334
Q ss_pred HHHHhcCCceeCHHHHHHcCCceEecCCccc
Q 028125 169 ITKDLSRIKRFGSQEALEYGLIDRIIRPPRI 199 (213)
Q Consensus 169 i~~~~~~~~~~sa~EA~~~GLiD~I~~~~~~ 199 (213)
..+++-.+..++++||+++||||+|...+++
T Consensus 155 a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l 185 (261)
T PRK03580 155 ANEMVMTGRRMDAEEALRWGIVNRVVPQAEL 185 (261)
T ss_pred HHHHHHhCCccCHHHHHHcCCCcEecCHhHH
Confidence 4445444678999999999999999887653
No 44
>PRK06190 enoyl-CoA hydratase; Provisional
Probab=98.92 E-value=3.8e-08 Score=84.24 Aligned_cols=148 Identities=14% Similarity=0.089 Sum_probs=100.3
Q ss_pred EEEEccc-----cCcchHHHHHHHHHhhccCCCCCceEEEEe----CCCCChhH-------------HHHHHHHHHhcCC
Q 028125 33 VIFIGQN-----IDEEFSNQILATMLYLDSVDDSKRVYMYIN----GPGGDVTP-------------TLAIYDTMQSLKS 90 (213)
Q Consensus 33 iI~i~G~-----I~~~~~~~l~~~l~~l~~~~~~~~I~l~IN----SpGG~v~~-------------~~~I~~~i~~~~~ 90 (213)
+|+++-+ ++.++.+.+.+.+..++.+++.+.|+|.=+ |.|+++.. ...+++.|..+++
T Consensus 16 ~Itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~i~~~~k 95 (258)
T PRK06190 16 TLTLNRPEARNALSAALRRALFAALAEADADDDVDVVVLTGADPAFCAGLDLKELGGDGSAYGAQDALPNPSPAWPAMRK 95 (258)
T ss_pred EEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCCccCCcCHHHHhcccchhhHHHHHHHHHHHHHhCCC
Confidence 4666654 677778888888888776665665555322 44555532 1346677889999
Q ss_pred CeEEEEccccchHHHHHHhcCCCCcEeeccCCeEEEeCCCccCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHH
Q 028125 91 PVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKIT 170 (213)
Q Consensus 91 ~v~t~~~G~aaSaa~~I~~ag~~~~r~~~p~s~i~iH~p~~~~~G~~~d~~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~ 170 (213)
||++.+.|.|..+|.-++++||. |++.+++.|.+-....+.. .... ....+ .+. +......
T Consensus 96 PvIAaV~G~a~GgG~~lalacD~--~ia~~~a~f~~pe~~~Gl~---p~~g----~~~~l--------~r~--vG~~~a~ 156 (258)
T PRK06190 96 PVIGAINGAAVTGGLELALACDI--LIASERARFADTHARVGIL---PGWG----LSVRL--------PQK--VGIGRAR 156 (258)
T ss_pred CEEEEECCEeecHHHHHHHhCCE--EEEeCCCEEECcccccCcC---CCcc----HHHHH--------HHH--hCHHHHH
Confidence 99999999999999999999998 9999999987544333211 0000 00111 111 2234445
Q ss_pred HHhcCCceeCHHHHHHcCCceEecCCccc
Q 028125 171 KDLSRIKRFGSQEALEYGLIDRIIRPPRI 199 (213)
Q Consensus 171 ~~~~~~~~~sa~EA~~~GLiD~I~~~~~~ 199 (213)
+++-.+..|+++||+++||||++...++.
T Consensus 157 ~l~ltg~~~~a~eA~~~GLv~~vv~~~~l 185 (258)
T PRK06190 157 RMSLTGDFLDAADALRAGLVTEVVPHDEL 185 (258)
T ss_pred HHHHhCCccCHHHHHHcCCCeEecCHhHH
Confidence 55555678999999999999999876553
No 45
>PRK11423 methylmalonyl-CoA decarboxylase; Provisional
Probab=98.90 E-value=2.9e-08 Score=85.00 Aligned_cols=148 Identities=14% Similarity=0.191 Sum_probs=97.6
Q ss_pred cEEEEccc-----cCcchHHHHHHHHHhhccCCCCCceEEEEe------CCCCChhHH--------------HHHHHHHH
Q 028125 32 RVIFIGQN-----IDEEFSNQILATMLYLDSVDDSKRVYMYIN------GPGGDVTPT--------------LAIYDTMQ 86 (213)
Q Consensus 32 ~iI~i~G~-----I~~~~~~~l~~~l~~l~~~~~~~~I~l~IN------SpGG~v~~~--------------~~I~~~i~ 86 (213)
.+|+|+-+ ++.+....+.+.+..++.++ .+.|+|.=+ |.|+++... ..+++.|.
T Consensus 15 ~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~-v~~vvltg~~~~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~l~~~i~ 93 (261)
T PRK11423 15 ATITFNNPAKRNALSKVLIDDLMQALSDLNRPE-IRVVILRAPSGSKVWSAGHDIHELPSGGRDPLSYDDPLRQILRMIQ 93 (261)
T ss_pred EEEEEcCccccCCCCHHHHHHHHHHHHHHhcCC-ceEEEEECCCCCCeeECCcCHHHHhhccccHHHHHHHHHHHHHHHH
Confidence 34666654 56677788888888776544 555544321 334554321 23566788
Q ss_pred hcCCCeEEEEccccchHHHHHHhcCCCCcEeeccCCeEEEeCCCccCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCCCH
Q 028125 87 SLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPF 166 (213)
Q Consensus 87 ~~~~~v~t~~~G~aaSaa~~I~~ag~~~~r~~~p~s~i~iH~p~~~~~G~~~d~~~~~~~l~~~~~~~~~~~a~~tg~~~ 166 (213)
.+++||++.+.|.|..+|.-++++||. |++.+++.|.+-....+..-...- ...+.+ . +..
T Consensus 94 ~~~kPvIaav~G~a~GgG~~lalacD~--~ia~~~a~f~~pe~~~Gl~~~~g~-------~~~l~~--------~--vg~ 154 (261)
T PRK11423 94 KFPKPVIAMVEGSVWGGAFELIMSCDL--IIAASTSTFAMTPANLGVPYNLSG-------ILNFTN--------D--AGF 154 (261)
T ss_pred hCCCCEEEEEecEEechHHHHHHhCCE--EEecCCCEecCchhhcCCCCCccH-------HHHHHH--------H--hHH
Confidence 889999999999999999999999998 999999988754444332100000 111111 1 123
Q ss_pred HHHHHHhcCCceeCHHHHHHcCCceEecCCccc
Q 028125 167 EKITKDLSRIKRFGSQEALEYGLIDRIIRPPRI 199 (213)
Q Consensus 167 ~~i~~~~~~~~~~sa~EA~~~GLiD~I~~~~~~ 199 (213)
....+++-.++.++++||+++||||+|...+++
T Consensus 155 ~~a~~l~l~g~~~~a~eA~~~GLv~~vv~~~~l 187 (261)
T PRK11423 155 HIVKEMFFTASPITAQRALAVGILNHVVEVEEL 187 (261)
T ss_pred HHHHHHHHcCCCcCHHHHHHcCCcCcccCHHHH
Confidence 444455545678999999999999999886654
No 46
>PRK09674 enoyl-CoA hydratase-isomerase; Provisional
Probab=98.90 E-value=4.5e-08 Score=83.47 Aligned_cols=149 Identities=13% Similarity=0.108 Sum_probs=99.6
Q ss_pred cEEEEccc-----cCcchHHHHHHHHHhhccCCCCCceEEEE----eCCCCChhH-------------HHHHHHHHHhcC
Q 028125 32 RVIFIGQN-----IDEEFSNQILATMLYLDSVDDSKRVYMYI----NGPGGDVTP-------------TLAIYDTMQSLK 89 (213)
Q Consensus 32 ~iI~i~G~-----I~~~~~~~l~~~l~~l~~~~~~~~I~l~I----NSpGG~v~~-------------~~~I~~~i~~~~ 89 (213)
.+|+++-+ ++.++.+.+.+.+..++.+++.+.|+|.= =|.|+++.. ...+++.|..++
T Consensus 13 ~~itlnrp~~~Nal~~~~~~~L~~~~~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~l~~~~ 92 (255)
T PRK09674 13 LLLTLNRPEARNALNNALLTQLVNELEAAATDTSIGVCVITGNARFFAAGADLNEMAEKDLAATLNDPRPQLWQRLQAFN 92 (255)
T ss_pred EEEEEcCCCccCCCCHHHHHHHHHHHHHHhhCCCcEEEEEECCCCceecccChHhHhccchhhhHHHHHHHHHHHHHhCC
Confidence 34666554 56667788888888777665555555531 134455432 123566788899
Q ss_pred CCeEEEEccccchHHHHHHhcCCCCcEeeccCCeEEEeCCCccCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHH
Q 028125 90 SPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKI 169 (213)
Q Consensus 90 ~~v~t~~~G~aaSaa~~I~~ag~~~~r~~~p~s~i~iH~p~~~~~G~~~d~~~~~~~l~~~~~~~~~~~a~~tg~~~~~i 169 (213)
+||++.+.|.|..+|.-++++||. |++.+++.|.+.....+..-..- ....+ .+. ......
T Consensus 93 kPvIAav~G~a~GgG~~lalacD~--~ia~~~a~f~~pe~~~Gl~p~~g-------~~~~l--------~~~--ig~~~a 153 (255)
T PRK09674 93 KPLIAAVNGYALGAGCELALLCDI--VIAGENARFGLPEITLGIMPGAG-------GTQRL--------IRS--VGKSLA 153 (255)
T ss_pred CCEEEEECCEeehHHHHHHHhCCE--EEecCCCEEeCchhhcCCCCCcc-------HHHHH--------HHH--hCHHHH
Confidence 999999999999999999999998 99999999876554433210000 00111 111 223444
Q ss_pred HHHhcCCceeCHHHHHHcCCceEecCCccc
Q 028125 170 TKDLSRIKRFGSQEALEYGLIDRIIRPPRI 199 (213)
Q Consensus 170 ~~~~~~~~~~sa~EA~~~GLiD~I~~~~~~ 199 (213)
.+++-.+..|+++||+++||||+|...+++
T Consensus 154 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~ 183 (255)
T PRK09674 154 SQMVLTGESITAQQAQQAGLVSEVFPPELT 183 (255)
T ss_pred HHHHHcCCccCHHHHHHcCCCcEecChHHH
Confidence 455555677999999999999999877654
No 47
>PRK09076 enoyl-CoA hydratase; Provisional
Probab=98.88 E-value=6.7e-08 Score=82.56 Aligned_cols=147 Identities=12% Similarity=0.092 Sum_probs=96.6
Q ss_pred EEEEccc----cCcchHHHHHHHHHhhccCCCCCceEEEEe-----CCCCChhH---------------HHHHHHHHHhc
Q 028125 33 VIFIGQN----IDEEFSNQILATMLYLDSVDDSKRVYMYIN-----GPGGDVTP---------------TLAIYDTMQSL 88 (213)
Q Consensus 33 iI~i~G~----I~~~~~~~l~~~l~~l~~~~~~~~I~l~IN-----SpGG~v~~---------------~~~I~~~i~~~ 88 (213)
+|+|+-+ ++.++...+.+.+..++.+++.+.|+|.=+ |.|+++.. ...+++.|..+
T Consensus 15 ~itlnrp~~Nal~~~~~~~l~~al~~~~~d~~vrvvVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 94 (258)
T PRK09076 15 ILTLNNPPANTWTADSLQALKQLVLELNADKDVYALVITGDGEKFFSAGADLNLFADGDKAVAREMARRFGEAFEALSAF 94 (258)
T ss_pred EEEECCCCcCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCceEeCcCHHHHhhcChhhHHHHHHHHHHHHHHHHhC
Confidence 4666655 566677788888887776655555555321 23444432 12345667888
Q ss_pred CCCeEEEEccccchHHHHHHhcCCCCcEeeccCCeEEEeCCCccCC-CChHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH
Q 028125 89 KSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAAR-GQADDIRNEADELLRVRDYIFKELSRKTGQPFE 167 (213)
Q Consensus 89 ~~~v~t~~~G~aaSaa~~I~~ag~~~~r~~~p~s~i~iH~p~~~~~-G~~~d~~~~~~~l~~~~~~~~~~~a~~tg~~~~ 167 (213)
++||++.+.|.|..+|.-++++||- |++.++++|.+.....+.. +-.. ...+.+ ..| ..
T Consensus 95 ~kPvIAav~G~a~GgG~~lalacD~--~ia~~~a~f~~pe~~~Gl~p~~g~--------~~~l~~--------~iG--~~ 154 (258)
T PRK09076 95 RGVSIAAINGYAMGGGLECALACDI--RIAEEQAQMALPEASVGLLPCAGG--------TQNLPW--------LVG--EG 154 (258)
T ss_pred CCCEEEEECCEEecHHHHHHHhCCE--EEecCCCEeeCcccccCCCCCccH--------HHHHHH--------HhC--HH
Confidence 9999999999999999999999998 9999999987654443321 1100 011111 112 23
Q ss_pred HHHHHhcCCceeCHHHHHHcCCceEecCCccc
Q 028125 168 KITKDLSRIKRFGSQEALEYGLIDRIIRPPRI 199 (213)
Q Consensus 168 ~i~~~~~~~~~~sa~EA~~~GLiD~I~~~~~~ 199 (213)
...+++-.+..|+++||+++||||+|....+.
T Consensus 155 ~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l 186 (258)
T PRK09076 155 WAKRMILCGERVDAATALRIGLVEEVVEKGEA 186 (258)
T ss_pred HHHHHHHcCCcCCHHHHHHCCCCceecCchhH
Confidence 33444444677999999999999999987653
No 48
>TIGR03210 badI 2-ketocyclohexanecarboxyl-CoA hydrolase. Members of this protein family are 2-ketocyclohexanecarboxyl-CoA hydrolase, a ring-opening enzyme that acts in catabolism of molecules such as benzoyl-CoA and cyclohexane carboxylate. It converts -ketocyclohexanecarboxyl-CoA to pimelyl-CoA. It is not sensitive to oxygen.
Probab=98.88 E-value=5.2e-08 Score=83.18 Aligned_cols=149 Identities=15% Similarity=0.187 Sum_probs=98.7
Q ss_pred cEEEEccc-----cCcchHHHHHHHHHhhccCCCCCceEEEEe-----CCCCChhHH--------------HHHHHHHHh
Q 028125 32 RVIFIGQN-----IDEEFSNQILATMLYLDSVDDSKRVYMYIN-----GPGGDVTPT--------------LAIYDTMQS 87 (213)
Q Consensus 32 ~iI~i~G~-----I~~~~~~~l~~~l~~l~~~~~~~~I~l~IN-----SpGG~v~~~--------------~~I~~~i~~ 87 (213)
.+|+|+-+ ++.++.+.+.+.+..++.+++.+.|+|.=+ |.|+++..- ..+++.|..
T Consensus 13 ~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~l~~ 92 (256)
T TIGR03210 13 AWIMINRPAKMNAFRGQTCDELIHALKDAGYDRQIGVIVLAGAGDKAFCTGGDQSTHDGGYDGRGTIGLPMEELHSAIRD 92 (256)
T ss_pred EEEEEcCCccccCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCceecCcChHHHhccccchhHHHHHHHHHHHHHHh
Confidence 34566544 566677788888887776665665555321 335555321 235677888
Q ss_pred cCCCeEEEEccccchHHHHHHhcCCCCcEeeccCCeEEEeCCCccCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH
Q 028125 88 LKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFE 167 (213)
Q Consensus 88 ~~~~v~t~~~G~aaSaa~~I~~ag~~~~r~~~p~s~i~iH~p~~~~~G~~~d~~~~~~~l~~~~~~~~~~~a~~tg~~~~ 167 (213)
+++||++.+.|.|..+|.-++++||. |++.+++.|.+-.+..+.... ... ...+ .+..| ..
T Consensus 93 ~~kPvIaav~G~a~GgG~~lal~cD~--~ia~~~a~f~~pe~~~G~~~~--~~~-----~~~l--------~~~vG--~~ 153 (256)
T TIGR03210 93 VPKPVIARVQGYAIGGGNVLVTICDL--TIASEKAQFGQVGPKVGSVDP--GYG-----TALL--------ARVVG--EK 153 (256)
T ss_pred CCCCEEEEECCEEehhhHHHHHhCCE--EEEeCCCEEecccccccccCC--ccH-----HHHH--------HHHhC--HH
Confidence 99999999999999999999999998 999999998765444331100 000 0011 11122 23
Q ss_pred HHHHHhcCCceeCHHHHHHcCCceEecCCccc
Q 028125 168 KITKDLSRIKRFGSQEALEYGLIDRIIRPPRI 199 (213)
Q Consensus 168 ~i~~~~~~~~~~sa~EA~~~GLiD~I~~~~~~ 199 (213)
...+++-.+..|+++||+++||||+|...++.
T Consensus 154 ~A~~lll~g~~~~a~eA~~~Glv~~vv~~~~l 185 (256)
T TIGR03210 154 KAREIWYLCRRYTAQEALAMGLVNAVVPHDQL 185 (256)
T ss_pred HHHHHHHhCCCcCHHHHHHcCCceeeeCHHHH
Confidence 33444444678999999999999999876553
No 49
>PRK07110 polyketide biosynthesis enoyl-CoA hydratase; Validated
Probab=98.88 E-value=4.5e-08 Score=83.24 Aligned_cols=149 Identities=11% Similarity=0.015 Sum_probs=100.2
Q ss_pred cEEEEccc-----cCcchHHHHHHHHHhhccCCCCCceEEEEe----CCCCChhHH------------HHHHHHHHhcCC
Q 028125 32 RVIFIGQN-----IDEEFSNQILATMLYLDSVDDSKRVYMYIN----GPGGDVTPT------------LAIYDTMQSLKS 90 (213)
Q Consensus 32 ~iI~i~G~-----I~~~~~~~l~~~l~~l~~~~~~~~I~l~IN----SpGG~v~~~------------~~I~~~i~~~~~ 90 (213)
.+|.++.+ ++.+..+.+.+.+..++.+++.+.|+|.=+ |.|+++... ..++..|..+++
T Consensus 16 ~~i~ln~p~~~Nal~~~~~~~L~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~~k 95 (249)
T PRK07110 16 AQVTMQDRVNKNAFSDELCDQLHEAFDTIAQDPRYKVVILTGYPNYFATGGTQEGLLSLQTGKGTFTEANLYSLALNCPI 95 (249)
T ss_pred EEEEecCCCccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCeeCCcChHHHhhccchhhhHhhHHHHHHHHcCCC
Confidence 34666654 566667788888887766655565555311 344554321 256778889999
Q ss_pred CeEEEEccccchHHHHHHhcCCCCcEeeccCCeEEEeCCCccCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHH
Q 028125 91 PVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKIT 170 (213)
Q Consensus 91 ~v~t~~~G~aaSaa~~I~~ag~~~~r~~~p~s~i~iH~p~~~~~G~~~d~~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~ 170 (213)
||++.+.|.|..+|..++++||. |++.+++.|.+.....+.. + .... ...+. ++ +......
T Consensus 96 PvIaav~G~a~GgG~~lal~cD~--~ia~~~a~f~~pe~~~Gl~--p-~~g~----~~~l~--------~~--~g~~~a~ 156 (249)
T PRK07110 96 PVIAAMQGHAIGGGLVLGLYADI--VVLSRESVYTANFMKYGFT--P-GMGA----TAILP--------EK--LGLALGQ 156 (249)
T ss_pred CEEEEecCceechHHHHHHhCCE--EEEeCCCEecCchhccCCC--C-CchH----HHHHH--------HH--hCHHHHH
Confidence 99999999999999999999998 9999999886544333321 1 1000 01111 11 2334455
Q ss_pred HHhcCCceeCHHHHHHcCCceEecCCccc
Q 028125 171 KDLSRIKRFGSQEALEYGLIDRIIRPPRI 199 (213)
Q Consensus 171 ~~~~~~~~~sa~EA~~~GLiD~I~~~~~~ 199 (213)
+++-.+..|+++||+++||||+|.+.+++
T Consensus 157 ~llltg~~~~a~eA~~~Glv~~vv~~~~l 185 (249)
T PRK07110 157 EMLLTARYYRGAELKKRGVPFPVLPRAEV 185 (249)
T ss_pred HHHHcCCccCHHHHHHcCCCeEEeChHHH
Confidence 56655778999999999999999976654
No 50
>PRK07658 enoyl-CoA hydratase; Provisional
Probab=98.88 E-value=5e-08 Score=83.13 Aligned_cols=149 Identities=15% Similarity=0.161 Sum_probs=97.9
Q ss_pred cEEEEccc----cCcchHHHHHHHHHhhccCCCCCceEEEE----eCCCCChhH----------------HHHHHHHHHh
Q 028125 32 RVIFIGQN----IDEEFSNQILATMLYLDSVDDSKRVYMYI----NGPGGDVTP----------------TLAIYDTMQS 87 (213)
Q Consensus 32 ~iI~i~G~----I~~~~~~~l~~~l~~l~~~~~~~~I~l~I----NSpGG~v~~----------------~~~I~~~i~~ 87 (213)
.+|+++-+ ++.++.+.+.+.+..++.+++.+.|+|.= =|.|+++.. ...+++.|..
T Consensus 13 ~~itl~rp~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 92 (257)
T PRK07658 13 AVITLNHPPANALSSQVLHELSELLDQVEKDDNVRVVVIHGEGRFFSAGADIKEFTSVTEAEQATELAQLGQVTFERVEK 92 (257)
T ss_pred EEEEECCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCceEeCcCHHHHhccCchhhHHHHHHHHHHHHHHHHh
Confidence 34566655 55666778888888777666566555532 134555431 1235567888
Q ss_pred cCCCeEEEEccccchHHHHHHhcCCCCcEeeccCCeEEEeCCCccCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH
Q 028125 88 LKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFE 167 (213)
Q Consensus 88 ~~~~v~t~~~G~aaSaa~~I~~ag~~~~r~~~p~s~i~iH~p~~~~~G~~~d~~~~~~~l~~~~~~~~~~~a~~tg~~~~ 167 (213)
+++||++.+.|.|..+|.-++++||. |++.++++|.+-....+..-. ..- ...+.+ ..| ..
T Consensus 93 ~~kpvIAav~G~a~GgG~~lalacD~--ria~~~a~f~~pe~~~Gl~p~---~g~----~~~l~~--------~vG--~~ 153 (257)
T PRK07658 93 FSKPVIAAIHGAALGGGLELAMSCHI--RFATESAKLGLPELNLGLIPG---FAG----TQRLPR--------YVG--KA 153 (257)
T ss_pred CCCCEEEEEcCeeeeHHHHHHHhCCE--EEecCCCcccCcccccCCCCC---CcH----HHHHHH--------HhC--HH
Confidence 99999999999999999999999998 999999988754433332100 000 011111 112 23
Q ss_pred HHHHHhcCCceeCHHHHHHcCCceEecCCccc
Q 028125 168 KITKDLSRIKRFGSQEALEYGLIDRIIRPPRI 199 (213)
Q Consensus 168 ~i~~~~~~~~~~sa~EA~~~GLiD~I~~~~~~ 199 (213)
...+++-.+..++++||+++||||+|...++.
T Consensus 154 ~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l 185 (257)
T PRK07658 154 KALEMMLTSEPITGAEALKWGLVNGVFPEETL 185 (257)
T ss_pred HHHHHHHcCCCcCHHHHHHcCCcCeecChhHH
Confidence 33455545678999999999999999876653
No 51
>PF00378 ECH: Enoyl-CoA hydratase/isomerase family; InterPro: IPR001753 The crotonase superfamily is comprised of mechanistically diverse proteins that share a conserved trimeric quaternary structure (sometimes a hexamer consisting of a dimer of trimers), the core of which consists of 4 turns of a (beta/beta/alpha)n superhelix. Some enzymes in the superfamily have been shown to display dehalogenase, hydratase, and isomerase activities, while others have been implicated in carbon-carbon bond formation and cleavage as well as the hydrolysis of thioesters []. However, these different enzymes share the need to stabilise an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two structurally conserved peptidic NH groups that provide hydrogen bonds to the carbonyl moieties of the acyl-CoA substrates and form an "oxyanion hole". The CoA thioester derivatives bind in a characteristic hooked shape and a conserved tunnel binds the pantetheine group of CoA, which links the 3'-phosphate ADP binding site to the site of reaction []. Enzymes in the crotonase superfamily include: Enoyl-CoA hydratase (crotonase; 4.2.1.17 from EC), which catalyses the hydratation of 2-trans-enoyl-CoA into 3-hydroxyacyl-CoA []. 3-2trans-enoyl-CoA isomerase (or dodecenoyl-CoA isomerise; 5.3.3.8 from EC), which shifts the 3-double bond of the intermediates of unsaturated fatty acid oxidation to the 2-trans position []. 3-hydroxbutyryl-CoA dehydratase (crotonase; 4.2.1.55 from EC), a bacterial enzyme involved in the butyrate/butanol-producing pathway. 4-Chlorobenzoyl-CoA dehalogenase (3.8.1.6 from EC), a Pseudomonas enzyme which catalyses the conversion of 4-chlorobenzoate-CoA to 4-hydroxybenzoate-CoA []. Dienoyl-CoA isomerise, which catalyses the isomerisation of 3-trans,5-cis-dienoyl-CoA to 2-trans,4-trans-dienoyl-CoA []. Naphthoate synthase (MenB, or DHNA synthetase; 4.1.3.36 from EC), a bacterial enzyme involved in the biosynthesis of menaquinone (vitamin K2) []. Carnitine racemase (gene caiD), which catalyses the reversible conversion of crotonobetaine to L-carnitine in Escherichia coli []. Methylmalonyl CoA decarboxylase (MMCD; 4.1.1.41 from EC), which has a hexameric structure (dimer of trimers) []. Carboxymethylproline synthase (CarB), which is involved in carbapenem biosynthesis []. 6-oxo camphor hydrolase, which catalyses the desymmetrisation of bicyclic beta-diketones to optically active keto acids []. The alpha subunit of fatty oxidation complex, a multi-enzyme complex that catalyses the last three reactions in the fatty acid beta-oxidation cycle []. AUH protein, a bifunctional RNA-binding homologue of enoyl-CoA hydratase []. This entry represents the core domain found in crotonase superfamily members.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2VRE_B 3RSI_A 1HZD_F 2ZQR_E 2ZQQ_D 3R9S_C 1O8U_E 1SZO_C 3MOY_A 2UZF_A ....
Probab=98.88 E-value=4e-08 Score=83.00 Aligned_cols=147 Identities=18% Similarity=0.203 Sum_probs=98.9
Q ss_pred cEEEEccc-----cCcchHHHHHHHHHhhccCCCCCceEEEEeCCC------CCh---------------hHHHHHHHHH
Q 028125 32 RVIFIGQN-----IDEEFSNQILATMLYLDSVDDSKRVYMYINGPG------GDV---------------TPTLAIYDTM 85 (213)
Q Consensus 32 ~iI~i~G~-----I~~~~~~~l~~~l~~l~~~~~~~~I~l~INSpG------G~v---------------~~~~~I~~~i 85 (213)
.+|.|+.+ ++.+....+.+.|..++.+++.+ .+.+.+.| +++ .....++..|
T Consensus 9 ~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~--vvv~~~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~l~~~l 86 (245)
T PF00378_consen 9 ATITLNRPEKRNALNPEMLDELEEALDEAEADPDVK--VVVISGGGKAFCAGADLKEFLNSDEEEAREFFRRFQELLSRL 86 (245)
T ss_dssp EEEEEECGGGTTEBSHHHHHHHHHHHHHHHHSTTES--EEEEEESTSESBESB-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCCCCCHHHHHHHHHHHHHHHhcCCcc--EEEEeecccccccccchhhhhccccccccccchhhccccccc
Confidence 34666665 56677788888888887776666 33344444 333 3334667888
Q ss_pred HhcCCCeEEEEccccchHHHHHHhcCCCCcEeeccCCeEEEeCCCccCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 028125 86 QSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQP 165 (213)
Q Consensus 86 ~~~~~~v~t~~~G~aaSaa~~I~~ag~~~~r~~~p~s~i~iH~p~~~~~G~~~d~~~~~~~l~~~~~~~~~~~a~~tg~~ 165 (213)
..+++|+++.+.|.|..+|.-++++||. |++.+++.|.+.....+..-..-- ...+.+.+ |
T Consensus 87 ~~~~kp~Iaav~G~a~GgG~~lala~D~--~ia~~~a~f~~pe~~~G~~p~~g~-------~~~l~r~~--------g-- 147 (245)
T PF00378_consen 87 ANFPKPTIAAVNGHAVGGGFELALACDF--RIAAEDAKFGFPEVRLGIFPGAGG-------TFRLPRLI--------G-- 147 (245)
T ss_dssp HHSSSEEEEEESSEEETHHHHHHHHSSE--EEEETTTEEETGGGGGTSSSTSTH-------HHHHHHHH--------H--
T ss_pred hhhhhheeecccccccccccccccccce--EEeecccceeeeecccCccccccc-------ccccceee--------e--
Confidence 8899999999999999999999999998 999999997654444332111100 01111111 1
Q ss_pred HHHHHHHhcCCceeCHHHHHHcCCceEecCCccc
Q 028125 166 FEKITKDLSRIKRFGSQEALEYGLIDRIIRPPRI 199 (213)
Q Consensus 166 ~~~i~~~~~~~~~~sa~EA~~~GLiD~I~~~~~~ 199 (213)
.....+++-.+..++++||+++||||+|...++.
T Consensus 148 ~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~l 181 (245)
T PF00378_consen 148 PSRARELLLTGEPISAEEALELGLVDEVVPDEEL 181 (245)
T ss_dssp HHHHHHHHHHTCEEEHHHHHHTTSSSEEESGGGH
T ss_pred cccccccccccccchhHHHHhhcceeEEcCchhh
Confidence 1222334333577899999999999999998773
No 52
>PRK05809 3-hydroxybutyryl-CoA dehydratase; Validated
Probab=98.87 E-value=4.8e-08 Score=83.42 Aligned_cols=147 Identities=18% Similarity=0.252 Sum_probs=97.1
Q ss_pred cEEEEccc-----cCcchHHHHHHHHHhhccCCCCCceEEEEeCCC-------CChhH---------------HHHHHHH
Q 028125 32 RVIFIGQN-----IDEEFSNQILATMLYLDSVDDSKRVYMYINGPG-------GDVTP---------------TLAIYDT 84 (213)
Q Consensus 32 ~iI~i~G~-----I~~~~~~~l~~~l~~l~~~~~~~~I~l~INSpG-------G~v~~---------------~~~I~~~ 84 (213)
.+|.++-+ ++.++...+.+.+..++.+++.+.|+| .+.| +++.. ...+++.
T Consensus 15 ~~itlnrp~~~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl--~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 92 (260)
T PRK05809 15 AVVTINRPKALNALNSETLKELDTVLDDIENDDNVYAVIL--TGAGEKAFVAGADISEMKDLNEEEGRKFGLLGNKVFRK 92 (260)
T ss_pred EEEEECCCcccCCCCHHHHHHHHHHHHHHhcCCCcEEEEE--EcCCCCceeeCcChHhHhccChHHHHHHHHHHHHHHHH
Confidence 44666654 566667778888877766555554444 4444 33321 1245677
Q ss_pred HHhcCCCeEEEEccccchHHHHHHhcCCCCcEeeccCCeEEEeCCCccCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 028125 85 MQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQ 164 (213)
Q Consensus 85 i~~~~~~v~t~~~G~aaSaa~~I~~ag~~~~r~~~p~s~i~iH~p~~~~~G~~~d~~~~~~~l~~~~~~~~~~~a~~tg~ 164 (213)
|..+++||++.+.|.|..+|.-++++||. |++.+++.|.+.....+.... ... ...+ .+. .
T Consensus 93 l~~~~kPvIaav~G~a~GgG~~lal~cD~--~va~~~a~f~~pe~~~Gl~p~---~g~----~~~l--------~~~--v 153 (260)
T PRK05809 93 LENLDKPVIAAINGFALGGGCELSMACDI--RIASEKAKFGQPEVGLGITPG---FGG----TQRL--------ARI--V 153 (260)
T ss_pred HHcCCCCEEEEEcCeeecHHHHHHHhCCE--EEeeCCCEEeCcccccCCCCC---ccH----HHHH--------HHH--h
Confidence 88899999999999999999999999998 999999998765544332111 000 0111 111 1
Q ss_pred CHHHHHHHhcCCceeCHHHHHHcCCceEecCCccc
Q 028125 165 PFEKITKDLSRIKRFGSQEALEYGLIDRIIRPPRI 199 (213)
Q Consensus 165 ~~~~i~~~~~~~~~~sa~EA~~~GLiD~I~~~~~~ 199 (213)
......+++-.+..++++||+++||||+|...++.
T Consensus 154 G~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l 188 (260)
T PRK05809 154 GPGKAKELIYTGDMINAEEALRIGLVNKVVEPEKL 188 (260)
T ss_pred CHHHHHHHHHhCCCCCHHHHHHcCCCCcccChHHH
Confidence 22334445545677999999999999999876553
No 53
>TIGR03189 dienoyl_CoA_hyt cyclohexa-1,5-dienecarbonyl-CoA hydratase. This enzyme, cyclohexa-1,5-dienecarbonyl-CoA hydratase, also called dienoyl-CoA hydratase, acts on the product of benzoyl-CoA reductase (EC 1.3.99.15). Benzoyl-CoA is a common intermediate in the degradation of many aromatic compounds, and this enzyme is part of an anaerobic pathway for dearomatization and degradation.
Probab=98.87 E-value=7.1e-08 Score=82.20 Aligned_cols=146 Identities=12% Similarity=0.040 Sum_probs=98.5
Q ss_pred cEEEEccc----cCcchHHHHHHHHHhhccCCCCCceEEEEe----CCCCChhH------------HHHHHHHHHhcCCC
Q 028125 32 RVIFIGQN----IDEEFSNQILATMLYLDSVDDSKRVYMYIN----GPGGDVTP------------TLAIYDTMQSLKSP 91 (213)
Q Consensus 32 ~iI~i~G~----I~~~~~~~l~~~l~~l~~~~~~~~I~l~IN----SpGG~v~~------------~~~I~~~i~~~~~~ 91 (213)
.+|+++.+ ++.++.+.+.+.+..++.+++.+.|+|.=+ |.|+++.+ ...++..|..+++|
T Consensus 12 ~~itlnrp~~Nal~~~~~~~l~~~l~~~~~~~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~~kP 91 (251)
T TIGR03189 12 LRLRLARPKANIVDAAMIAALSAALGEHLEDSALRAVLLDAEGPHFSFGASVAEHMPDQCAAMLASLHKLVIAMLDSPVP 91 (251)
T ss_pred EEEEeCCCCcCCCCHHHHHHHHHHHHHHHcCCCceEEEEECCCCceecCcChhhhCchhHHHHHHHHHHHHHHHHhCCCC
Confidence 35677776 666777888888888776665665554311 33444432 02355667888999
Q ss_pred eEEEEccccchHHHHHHhcCCCCcEeeccCCeEEEeCCCccCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHH
Q 028125 92 VGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITK 171 (213)
Q Consensus 92 v~t~~~G~aaSaa~~I~~ag~~~~r~~~p~s~i~iH~p~~~~~G~~~d~~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~ 171 (213)
|++.+.|.|..+|.-++++||- |++.++++|.+-....+.... ... ..+ .+. +......+
T Consensus 92 vIaav~G~a~GgG~~lal~cD~--~ia~~~a~f~~pe~~~Gl~p~---~~~-----~~l--------~~~--vg~~~a~~ 151 (251)
T TIGR03189 92 ILVAVRGQCLGGGLEVAAAGNL--MFAAPDAKLGQPEIVLGVFAP---AAS-----CLL--------PER--MGRVAAED 151 (251)
T ss_pred EEEEecCeeeeHHHHHHHhCCE--EEEcCCCEEeCchhhcCCCCC---chH-----HHH--------HHH--hCHHHHHH
Confidence 9999999999999999999998 999999998764444332110 000 011 111 23344555
Q ss_pred HhcCCceeCHHHHHHcCCceEecCCc
Q 028125 172 DLSRIKRFGSQEALEYGLIDRIIRPP 197 (213)
Q Consensus 172 ~~~~~~~~sa~EA~~~GLiD~I~~~~ 197 (213)
++-.+..|+++||+++||||+|.+..
T Consensus 152 l~ltg~~~~a~eA~~~Glv~~v~~~~ 177 (251)
T TIGR03189 152 LLYSGRSIDGAEGARIGLANAVAEDP 177 (251)
T ss_pred HHHcCCCCCHHHHHHCCCcceecCcH
Confidence 55556779999999999999998643
No 54
>PRK08138 enoyl-CoA hydratase; Provisional
Probab=98.87 E-value=7e-08 Score=82.57 Aligned_cols=146 Identities=15% Similarity=0.132 Sum_probs=98.2
Q ss_pred cEEEEccc-----cCcchHHHHHHHHHhhccCCCCCceEEEEe----CCCCChhH-------------HHHHHHHHHhcC
Q 028125 32 RVIFIGQN-----IDEEFSNQILATMLYLDSVDDSKRVYMYIN----GPGGDVTP-------------TLAIYDTMQSLK 89 (213)
Q Consensus 32 ~iI~i~G~-----I~~~~~~~l~~~l~~l~~~~~~~~I~l~IN----SpGG~v~~-------------~~~I~~~i~~~~ 89 (213)
.+|.++-+ ++.++...+.+.+..++.+++.+.|+|.=+ |.|+++.. ...+++.|..++
T Consensus 19 ~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~l~~~~ 98 (261)
T PRK08138 19 ALLRLNRPEARNALNMEVRQQLAEHFTELSEDPDIRAIVLTGGEKVFAAGADIKEFATAGAIEMYLRHTERYWEAIAQCP 98 (261)
T ss_pred EEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCeeEEEEECCCCCeeCCcCHHHHhccchhHHHHHHHHHHHHHHHhCC
Confidence 44666544 666677888888887776665565555311 33444422 123566778889
Q ss_pred CCeEEEEccccchHHHHHHhcCCCCcEeeccCCeEEEeCCCccC---CCChHHHHHHHHHHHHHHHHHHHHHHHHhCCCH
Q 028125 90 SPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAA---RGQADDIRNEADELLRVRDYIFKELSRKTGQPF 166 (213)
Q Consensus 90 ~~v~t~~~G~aaSaa~~I~~ag~~~~r~~~p~s~i~iH~p~~~~---~G~~~d~~~~~~~l~~~~~~~~~~~a~~tg~~~ 166 (213)
+|+++.+.|.|..+|.-++++||. |++.+++.|.+-....+. .|.. ..+ .+. +..
T Consensus 99 kPvIaav~G~a~GgG~~lalacD~--ria~~~a~f~~pe~~~Gl~p~~g~~----------~~l--------~~~--vG~ 156 (261)
T PRK08138 99 KPVIAAVNGYALGGGCELAMHADI--IVAGESASFGQPEIKVGLMPGAGGT----------QRL--------VRA--VGK 156 (261)
T ss_pred CCEEEEEccEEEcHHHHHHHhCCE--EEecCCCEeeCcccccccCCCCcHH----------HHH--------HHH--hCH
Confidence 999999999999999999999998 999999998764444332 1111 011 111 223
Q ss_pred HHHHHHhcCCceeCHHHHHHcCCceEecCCccc
Q 028125 167 EKITKDLSRIKRFGSQEALEYGLIDRIIRPPRI 199 (213)
Q Consensus 167 ~~i~~~~~~~~~~sa~EA~~~GLiD~I~~~~~~ 199 (213)
....+++-.+..|+++||+++||||+|...++.
T Consensus 157 ~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l 189 (261)
T PRK08138 157 FKAMRMALTGCMVPAPEALAIGLVSEVVEDEQT 189 (261)
T ss_pred HHHHHHHHcCCCCCHHHHHHCCCCcEecCchHH
Confidence 334445545677999999999999999877653
No 55
>PLN02600 enoyl-CoA hydratase
Probab=98.87 E-value=6.7e-08 Score=82.29 Aligned_cols=148 Identities=14% Similarity=0.116 Sum_probs=97.4
Q ss_pred EEEEccc-----cCcchHHHHHHHHHhhccCCCCCceEEEEe-----CCCCChhHH---------------HHHHHHHHh
Q 028125 33 VIFIGQN-----IDEEFSNQILATMLYLDSVDDSKRVYMYIN-----GPGGDVTPT---------------LAIYDTMQS 87 (213)
Q Consensus 33 iI~i~G~-----I~~~~~~~l~~~l~~l~~~~~~~~I~l~IN-----SpGG~v~~~---------------~~I~~~i~~ 87 (213)
+|+|+-+ ++.++.+.+.+.+..++.+++.+.|+|.=. |.|+++..- ..+++.|..
T Consensus 7 ~itlnrp~~~Nal~~~~~~~l~~~~~~~~~d~~vr~vVl~g~~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~ 86 (251)
T PLN02600 7 ELRLDRPEAKNAIGKEMLRGLRSAFEKIQADASARVVMLRSSVPGVFCAGADLKERRKMSPSEVQKFVNSLRSTFSSLEA 86 (251)
T ss_pred EEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCceEEEEecCCCCceeeCcCHHHHhccChHHHHHHHHHHHHHHHHHHh
Confidence 4556554 566777888888887776665665555311 334554321 124456778
Q ss_pred cCCCeEEEEccccchHHHHHHhcCCCCcEeeccCCeEEEeCCCccCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH
Q 028125 88 LKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFE 167 (213)
Q Consensus 88 ~~~~v~t~~~G~aaSaa~~I~~ag~~~~r~~~p~s~i~iH~p~~~~~G~~~d~~~~~~~l~~~~~~~~~~~a~~tg~~~~ 167 (213)
+++||++.+.|.|..+|.-++++||. |++.+++.|.+-....+.. .+.. ....+.+ . +...
T Consensus 87 ~~kPvIAav~G~a~GgG~~lala~D~--~ia~~~a~f~~pe~~~Gl~---p~~g----~~~~l~~--------~--~G~~ 147 (251)
T PLN02600 87 LSIPTIAVVEGAALGGGLELALSCDL--RICGEEAVFGLPETGLAII---PGAG----GTQRLPR--------L--VGRS 147 (251)
T ss_pred CCCCEEEEecCeecchhHHHHHhCCE--EEeeCCCEEeCcccccCcC---CCch----HHHHHHH--------H--hCHH
Confidence 89999999999999999999999998 9999999987643333211 0000 0011111 1 2233
Q ss_pred HHHHHhcCCceeCHHHHHHcCCceEecCCccc
Q 028125 168 KITKDLSRIKRFGSQEALEYGLIDRIIRPPRI 199 (213)
Q Consensus 168 ~i~~~~~~~~~~sa~EA~~~GLiD~I~~~~~~ 199 (213)
...+++-.+..|+++||+++||||+|...+++
T Consensus 148 ~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~~ 179 (251)
T PLN02600 148 RAKELIFTGRRIGAREAASMGLVNYCVPAGEA 179 (251)
T ss_pred HHHHHHHhCCccCHHHHHHcCCCcEeeChhHH
Confidence 34455545678999999999999999887664
No 56
>PRK06210 enoyl-CoA hydratase; Provisional
Probab=98.87 E-value=4.3e-08 Score=84.29 Aligned_cols=145 Identities=16% Similarity=0.153 Sum_probs=98.3
Q ss_pred EEEEccc-----cCcchHHHHHHHHHhhccCCCCCceEEEEe----CCCCChhHH-------------------------
Q 028125 33 VIFIGQN-----IDEEFSNQILATMLYLDSVDDSKRVYMYIN----GPGGDVTPT------------------------- 78 (213)
Q Consensus 33 iI~i~G~-----I~~~~~~~l~~~l~~l~~~~~~~~I~l~IN----SpGG~v~~~------------------------- 78 (213)
+|+++-+ ++.++.+.+.+.+..++.+++.+.|+|.=+ |-|+++...
T Consensus 18 ~itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (272)
T PRK06210 18 VITLNRPDRLNAWTPVMEAEVYAAMDRAEADPAVRVIVLTGAGRGFCAGADMGELQTIDPSDGRRDTDVRPFVGNRRPDY 97 (272)
T ss_pred EEEeCCcccccCCCHHHHHHHHHHHHHhccCCCeeEEEEECCCCCcccccCHHHHhccCcccccccccchhhhhhhhhhH
Confidence 4667655 667777888888888776555555555411 223443321
Q ss_pred HHHHHHHHhcCCCeEEEEccccchHHHHHHhcCCCCcEeeccCCeEEEeCCCccC---CCChHHHHHHHHHHHHHHHHHH
Q 028125 79 LAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAA---RGQADDIRNEADELLRVRDYIF 155 (213)
Q Consensus 79 ~~I~~~i~~~~~~v~t~~~G~aaSaa~~I~~ag~~~~r~~~p~s~i~iH~p~~~~---~G~~~d~~~~~~~l~~~~~~~~ 155 (213)
..+++.|..+++||++.+.|.|..+|.-++++||. |++.++++|.+..+..+. .|... .+.+
T Consensus 98 ~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~--~ia~~~a~f~~pe~~~Gl~p~~g~~~----------~l~~--- 162 (272)
T PRK06210 98 QTRYHFLTALRKPVIAAINGACAGIGLTHALMCDV--RFAADGAKFTTAFARRGLIAEHGISW----------ILPR--- 162 (272)
T ss_pred HHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCE--EEEeCCCEEechHHhcCCCCCCchhh----------hhHh---
Confidence 12346677889999999999999999999999998 999999999876554432 11110 0111
Q ss_pred HHHHHHhCCCHHHHHHHhcCCceeCHHHHHHcCCceEecCCccc
Q 028125 156 KELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRIIRPPRI 199 (213)
Q Consensus 156 ~~~a~~tg~~~~~i~~~~~~~~~~sa~EA~~~GLiD~I~~~~~~ 199 (213)
. +......+++-.+..++++||+++||||+|...+++
T Consensus 163 -----~--ig~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l 199 (272)
T PRK06210 163 -----L--VGHANALDLLLSARTFYAEEALRLGLVNRVVPPDEL 199 (272)
T ss_pred -----h--hCHHHHHHHHHcCCccCHHHHHHcCCcceecCHHHH
Confidence 1 123445555545677899999999999999876653
No 57
>PRK05981 enoyl-CoA hydratase; Provisional
Probab=98.86 E-value=5.9e-08 Score=83.14 Aligned_cols=149 Identities=8% Similarity=0.075 Sum_probs=96.5
Q ss_pred cEEEEccc-----cCcchHHHHHHHHHhhccCCC-CCceEEEEe----CCCCChhH--------------H-------HH
Q 028125 32 RVIFIGQN-----IDEEFSNQILATMLYLDSVDD-SKRVYMYIN----GPGGDVTP--------------T-------LA 80 (213)
Q Consensus 32 ~iI~i~G~-----I~~~~~~~l~~~l~~l~~~~~-~~~I~l~IN----SpGG~v~~--------------~-------~~ 80 (213)
.+|+++-+ ++.++...+.+.+..++.+++ .+.|+|.=. |.|+++.. . ..
T Consensus 15 ~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (266)
T PRK05981 15 AILTLDHPEVMNAVSIDMLGGLAEALDAIEDGKAEVRCLVLTGAGRGFCTGANLQGRGSGGRESDSGGDAGAALETAYHP 94 (266)
T ss_pred EEEEecCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcccccCHHhhhcccccccccchhHHHHHHHHHH
Confidence 34666654 566677788888877765432 454554421 33344432 1 23
Q ss_pred HHHHHHhcCCCeEEEEccccchHHHHHHhcCCCCcEeeccCCeEEEeCCCccCCCChHHHHHHHHHHHHHHHHHHHHHHH
Q 028125 81 IYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSR 160 (213)
Q Consensus 81 I~~~i~~~~~~v~t~~~G~aaSaa~~I~~ag~~~~r~~~p~s~i~iH~p~~~~~G~~~d~~~~~~~l~~~~~~~~~~~a~ 160 (213)
++..|..+++||++.+.|.|..+|.-++++||. |++.+++.|.+..+..+..-.. .. ...+.+.
T Consensus 95 ~~~~l~~~~kpvIaav~G~a~GgG~~lalacD~--~ia~~~a~f~~~e~~lG~~p~~---g~----~~~l~~~------- 158 (266)
T PRK05981 95 FLRRLRNLPCPIVTAVNGPAAGVGMSFALMGDL--ILCARSAYFLQAFRRIGLVPDG---GS----TWLLPRL------- 158 (266)
T ss_pred HHHHHHhCCCCEEEEECCEeehHHHHHHHhCCE--EEecCCCEEechHhhcCCCCCc---cH----HHHHHHH-------
Confidence 556778889999999999999999999999998 9999999998665544321100 00 0011111
Q ss_pred HhCCCHHHHHHHhcCCceeCHHHHHHcCCceEecCCccc
Q 028125 161 KTGQPFEKITKDLSRIKRFGSQEALEYGLIDRIIRPPRI 199 (213)
Q Consensus 161 ~tg~~~~~i~~~~~~~~~~sa~EA~~~GLiD~I~~~~~~ 199 (213)
.......+++-.+..|+++||+++||||+|...+++
T Consensus 159 ---vg~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~ 194 (266)
T PRK05981 159 ---VGKARAMELSLLGEKLPAETALQWGLVNRVVDDAEL 194 (266)
T ss_pred ---hHHHHHHHHHHhCCCcCHHHHHHcCCceEeeCHhHH
Confidence 122333444444677999999999999999987654
No 58
>PRK08150 enoyl-CoA hydratase; Provisional
Probab=98.86 E-value=8.9e-08 Score=81.73 Aligned_cols=147 Identities=16% Similarity=0.140 Sum_probs=95.8
Q ss_pred cEEEEccc-----cCcchHHHHHHHHHhhccCCCCCceEEEEe----CCCCChhH---------------HHHHHHHHHh
Q 028125 32 RVIFIGQN-----IDEEFSNQILATMLYLDSVDDSKRVYMYIN----GPGGDVTP---------------TLAIYDTMQS 87 (213)
Q Consensus 32 ~iI~i~G~-----I~~~~~~~l~~~l~~l~~~~~~~~I~l~IN----SpGG~v~~---------------~~~I~~~i~~ 87 (213)
.+|.++-+ ++.++...+.+.+..++ ++.+.|+|.=+ |.|+++.. ...+++.|..
T Consensus 13 ~~itlnrp~~~Nal~~~~~~~l~~al~~~~--~~vr~vvltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~ 90 (255)
T PRK08150 13 ATIGLNRPAKRNALNDGLIAALRAAFARLP--EGVRAVVLHGEGDHFCAGLDLSELRERDAGEGMHHSRRWHRVFDKIQY 90 (255)
T ss_pred EEEEEcCCccccCCCHHHHHHHHHHHHHhh--cCCeEEEEECCCCceecCcCHHHHhhccchhHHHHHHHHHHHHHHHHh
Confidence 34566654 55667778888887765 44555555422 23455432 1235567788
Q ss_pred cCCCeEEEEccccchHHHHHHhcCCCCcEeeccCCeEEEeCCCccCC-CChHHHHHHHHHHHHHHHHHHHHHHHHhCCCH
Q 028125 88 LKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAAR-GQADDIRNEADELLRVRDYIFKELSRKTGQPF 166 (213)
Q Consensus 88 ~~~~v~t~~~G~aaSaa~~I~~ag~~~~r~~~p~s~i~iH~p~~~~~-G~~~d~~~~~~~l~~~~~~~~~~~a~~tg~~~ 166 (213)
+++||++.+.|.|..+|.-++++||. |++.+++.|.+-....+.. +-.. ...+.+ .. ..
T Consensus 91 ~~kPvIaav~G~a~GgG~~lalacD~--~ia~~~a~f~~pe~~~Gl~p~~g~--------~~~l~~--------~i--G~ 150 (255)
T PRK08150 91 GRVPVIAALHGAVVGGGLELASAAHI--RVADESTYFALPEGQRGIFVGGGG--------SVRVPR--------LI--GV 150 (255)
T ss_pred CCCCEEEEECCEEEcHHHHHHHhCCE--EEEeCCCEEeccccccCCCCCccH--------HHHHHH--------Hh--CH
Confidence 89999999999999999999999998 9999999887644433321 1100 011111 11 22
Q ss_pred HHHHHHhcCCceeCHHHHHHcCCceEecCCcccc
Q 028125 167 EKITKDLSRIKRFGSQEALEYGLIDRIIRPPRIK 200 (213)
Q Consensus 167 ~~i~~~~~~~~~~sa~EA~~~GLiD~I~~~~~~~ 200 (213)
....+++-.+..|+++||+++||||+|...+++.
T Consensus 151 ~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~ 184 (255)
T PRK08150 151 ARMTDMMLTGRVYDAQEGERLGLAQYLVPAGEAL 184 (255)
T ss_pred HHHHHHHHcCCcCCHHHHHHcCCccEeeCchHHH
Confidence 3334444446789999999999999999876643
No 59
>PRK05980 enoyl-CoA hydratase; Provisional
Probab=98.85 E-value=4.9e-08 Score=83.41 Aligned_cols=146 Identities=15% Similarity=0.190 Sum_probs=97.9
Q ss_pred cEEEEccc-----cCcchHHHHHHHHHhhccCCCCCceEEEEe-----CCCCChhH------------H-------HHHH
Q 028125 32 RVIFIGQN-----IDEEFSNQILATMLYLDSVDDSKRVYMYIN-----GPGGDVTP------------T-------LAIY 82 (213)
Q Consensus 32 ~iI~i~G~-----I~~~~~~~l~~~l~~l~~~~~~~~I~l~IN-----SpGG~v~~------------~-------~~I~ 82 (213)
.+|+++-+ ++.++.+.+.+.+..++.+++.+.|+|.=+ |-|+++.. . ..++
T Consensus 14 ~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (260)
T PRK05980 14 ALLTLNRPEKLNALNYALIDRLLARLDAIEVDESVRAVILTGAGDRAFSAGADIHEFSASVAAGADVALRDFVRRGQAMT 93 (260)
T ss_pred EEEEECCcccccCCCHHHHHHHHHHHHHHhhCCCcEEEEEEeCCCCceEcCcCHHHHhhhccccchhhHHHHHHHHHHHH
Confidence 44666654 566777888888887776665665555322 23344421 0 1245
Q ss_pred HHHHhcCCCeEEEEccccchHHHHHHhcCCCCcEeeccCCeEEEeCCCccCC---CChHHHHHHHHHHHHHHHHHHHHHH
Q 028125 83 DTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAAR---GQADDIRNEADELLRVRDYIFKELS 159 (213)
Q Consensus 83 ~~i~~~~~~v~t~~~G~aaSaa~~I~~ag~~~~r~~~p~s~i~iH~p~~~~~---G~~~d~~~~~~~l~~~~~~~~~~~a 159 (213)
+.|..+++||++.+.|.|..+|.-++++||. |++.++++|.+-....+.. |.. ..+.
T Consensus 94 ~~l~~~~kPvIaav~G~a~GgG~~lal~cD~--ria~~~a~f~~pe~~~Gl~p~~g~~----------~~l~-------- 153 (260)
T PRK05980 94 ARLEAFPKPVIAAVNGLAFGGGCEITEAVHL--AIASERALFAKPEIRLGMPPTFGGT----------QRLP-------- 153 (260)
T ss_pred HHHHhCCCCEEEEEcCEEEhhhhHHhHhCCE--EEecCCCEecCcccccCCCCCchHh----------hHHH--------
Confidence 5677889999999999999999999999998 9999999987644433311 111 1111
Q ss_pred HHhCCCHHHHHHHhcCCceeCHHHHHHcCCceEecCCccc
Q 028125 160 RKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRIIRPPRI 199 (213)
Q Consensus 160 ~~tg~~~~~i~~~~~~~~~~sa~EA~~~GLiD~I~~~~~~ 199 (213)
+. +......+++-.++.++++||+++||||+|...+++
T Consensus 154 ~~--vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l 191 (260)
T PRK05980 154 RL--AGRKRALELLLTGDAFSAERALEIGLVNAVVPHEEL 191 (260)
T ss_pred hh--cCHHHHHHHHHcCCccCHHHHHHcCCCCcccCHHHH
Confidence 11 123344555555678999999999999999877653
No 60
>PLN02888 enoyl-CoA hydratase
Probab=98.85 E-value=7.6e-08 Score=82.64 Aligned_cols=149 Identities=13% Similarity=0.098 Sum_probs=97.8
Q ss_pred cEEEEccc-----cCcchHHHHHHHHHhhccCCCCCceEEEEe----CCCCChhHH------------HHHHHHHHhcCC
Q 028125 32 RVIFIGQN-----IDEEFSNQILATMLYLDSVDDSKRVYMYIN----GPGGDVTPT------------LAIYDTMQSLKS 90 (213)
Q Consensus 32 ~iI~i~G~-----I~~~~~~~l~~~l~~l~~~~~~~~I~l~IN----SpGG~v~~~------------~~I~~~i~~~~~ 90 (213)
.+|.++-+ ++.++...+.+.+..++.+++.+.|+|.=+ |-|+++... ..++..|..+++
T Consensus 21 ~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~i~~~~k 100 (265)
T PLN02888 21 ATITINRPKALNALTRPMMVELAAAFKRLDEDDSVKVIILTGSGRAFCSGVDLTAAEEVFKGDVKDVETDPVAQMERCRK 100 (265)
T ss_pred EEEEEcCCCcccCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCcccCCCCHHHHHhhccchhhHHHHHHHHHHHhCCC
Confidence 34666655 666777888888888776665665555311 233555321 234556778899
Q ss_pred CeEEEEccccchHHHHHHhcCCCCcEeeccCCeEEEeCCCccCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHH
Q 028125 91 PVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKIT 170 (213)
Q Consensus 91 ~v~t~~~G~aaSaa~~I~~ag~~~~r~~~p~s~i~iH~p~~~~~G~~~d~~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~ 170 (213)
||++.+.|.|..+|..++++||. |++.+++.|.+-....+.. ....- ...+. +. +......
T Consensus 101 PvIaav~G~a~GgG~~lal~cD~--ria~~~a~f~~pe~~~Gl~---p~~g~----~~~l~--------~~--vG~~~a~ 161 (265)
T PLN02888 101 PIIGAINGFAITAGFEIALACDI--LVASRGAKFIDTHAKFGIF---PSWGL----SQKLS--------RI--IGANRAR 161 (265)
T ss_pred CEEEEECCeeechHHHHHHhCCE--EEecCCCEecCccccccCC---CCccH----hhHHH--------HH--hCHHHHH
Confidence 99999999999999999999998 9999999987643333221 00000 01111 11 1233344
Q ss_pred HHhcCCceeCHHHHHHcCCceEecCCccc
Q 028125 171 KDLSRIKRFGSQEALEYGLIDRIIRPPRI 199 (213)
Q Consensus 171 ~~~~~~~~~sa~EA~~~GLiD~I~~~~~~ 199 (213)
+++-.+..|+++||+++||||+|...++.
T Consensus 162 ~l~ltg~~~~a~eA~~~Glv~~vv~~~~l 190 (265)
T PLN02888 162 EVSLTAMPLTAETAERWGLVNHVVEESEL 190 (265)
T ss_pred HHHHhCCccCHHHHHHcCCccEeeChHHH
Confidence 45444678999999999999999876654
No 61
>PRK07938 enoyl-CoA hydratase; Provisional
Probab=98.85 E-value=5.8e-08 Score=82.58 Aligned_cols=146 Identities=13% Similarity=0.123 Sum_probs=98.8
Q ss_pred cEEEEccc----cCcchHHHHHHHHHhhccCCCCCceEEEE----eCCCCChhHH----------------HHHHHHHHh
Q 028125 32 RVIFIGQN----IDEEFSNQILATMLYLDSVDDSKRVYMYI----NGPGGDVTPT----------------LAIYDTMQS 87 (213)
Q Consensus 32 ~iI~i~G~----I~~~~~~~l~~~l~~l~~~~~~~~I~l~I----NSpGG~v~~~----------------~~I~~~i~~ 87 (213)
.+|+|+-+ ++.++...+.+.+..++.++..+.|+|.= =|-|+++..- ..+++.|..
T Consensus 13 ~~itlnrp~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~G~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 92 (249)
T PRK07938 13 AEVTVDYPPVNALPSAGWFALADAITAAGADPDTRVVVLRAEGRGFNAGVDIKELQATPGFTALIDANRGCFAAFRAVYE 92 (249)
T ss_pred EEEEECCCCcccCCHHHHHHHHHHHHHhhcCCCeEEEEEECCCCceecCcCHHHHhhccchhHHHHHHHHHHHHHHHHHh
Confidence 45667665 56666778888888776665555555531 1344665321 124556778
Q ss_pred cCCCeEEEEccccchHHHHHHhcCCCCcEeeccCCeEEEeCCCccCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH
Q 028125 88 LKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFE 167 (213)
Q Consensus 88 ~~~~v~t~~~G~aaSaa~~I~~ag~~~~r~~~p~s~i~iH~p~~~~~G~~~d~~~~~~~l~~~~~~~~~~~a~~tg~~~~ 167 (213)
+++||++.+.|.|..+|.-++++||. |++.+++.|.+-....+..|.. ..+ .+. ....
T Consensus 93 ~~kPvIAav~G~a~GgG~~Lal~cD~--ria~~~a~f~~pe~~~G~~g~~----------~~l--------~~~--vg~~ 150 (249)
T PRK07938 93 CAVPVIAAVHGFCLGGGIGLVGNADV--IVASDDATFGLPEVDRGALGAA----------THL--------QRL--VPQH 150 (249)
T ss_pred CCCCEEEEEcCEEeehHHHHHHhCCE--EEEeCCCEeeCccceecCchhH----------HHH--------HHh--cCHH
Confidence 89999999999999999999999998 9999999987644433322211 011 111 2334
Q ss_pred HHHHHhcCCceeCHHHHHHcCCceEecCCccc
Q 028125 168 KITKDLSRIKRFGSQEALEYGLIDRIIRPPRI 199 (213)
Q Consensus 168 ~i~~~~~~~~~~sa~EA~~~GLiD~I~~~~~~ 199 (213)
...+++-.+..++++||+++||||+|...+++
T Consensus 151 ~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l 182 (249)
T PRK07938 151 LMRALFFTAATITAAELHHFGSVEEVVPRDQL 182 (249)
T ss_pred HHHHHHHhCCcCCHHHHHHCCCccEEeCHHHH
Confidence 44555545688999999999999999876554
No 62
>PRK06023 enoyl-CoA hydratase; Provisional
Probab=98.84 E-value=6.5e-08 Score=82.30 Aligned_cols=149 Identities=17% Similarity=0.135 Sum_probs=98.3
Q ss_pred cEEEEccc-----cCcchHHHHHHHHHhhccCCCCCceEEEEe----CCCCChhH--------------HHHHHHHHHhc
Q 028125 32 RVIFIGQN-----IDEEFSNQILATMLYLDSVDDSKRVYMYIN----GPGGDVTP--------------TLAIYDTMQSL 88 (213)
Q Consensus 32 ~iI~i~G~-----I~~~~~~~l~~~l~~l~~~~~~~~I~l~IN----SpGG~v~~--------------~~~I~~~i~~~ 88 (213)
.+|+++-+ ++.++.+.+.+.+..++.+++.+.|+|.=+ |.|+++.. ...+++.|+.+
T Consensus 17 ~~itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~l~~~ 96 (251)
T PRK06023 17 QVIRFNRPEKKNAITRAMYATMAKALKAADADDAIRAHVFLGTEGCFSAGNDMQDFLAAAMGGTSFGSEILDFLIALAEA 96 (251)
T ss_pred EEEEecCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCeecCcCHHHHhhccccchhhHHHHHHHHHHHHhC
Confidence 34666654 667778888888888876655565554211 33444421 12456678888
Q ss_pred CCCeEEEEccccchHHHHHHhcCCCCcEeeccCCeEEEeCCCccCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHH
Q 028125 89 KSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEK 168 (213)
Q Consensus 89 ~~~v~t~~~G~aaSaa~~I~~ag~~~~r~~~p~s~i~iH~p~~~~~G~~~d~~~~~~~l~~~~~~~~~~~a~~tg~~~~~ 168 (213)
++||++.+.|.|..+|.-++++||. |++.++++|.+.....+..-. ... ...+ .+. .....
T Consensus 97 ~kPvIAav~G~a~GgG~~la~acD~--ria~~~a~f~~pe~~~Gl~p~---~g~----~~~l--------~~~--~g~~~ 157 (251)
T PRK06023 97 EKPIVSGVDGLAIGIGTTIHLHCDL--TFASPRSLFRTPFVDLALVPE---AGS----SLLA--------PRL--MGHQR 157 (251)
T ss_pred CCCEEEEeCCceecHHHHHHHhCCE--EEEeCCCEecCcccccCCCCC---chH----HHHH--------HHH--HhHHH
Confidence 9999999999999999999999998 999999999865444332100 000 0000 011 12233
Q ss_pred HHHHhcCCceeCHHHHHHcCCceEecCCccc
Q 028125 169 ITKDLSRIKRFGSQEALEYGLIDRIIRPPRI 199 (213)
Q Consensus 169 i~~~~~~~~~~sa~EA~~~GLiD~I~~~~~~ 199 (213)
..+++-.++.++++||+++||||+|...++.
T Consensus 158 a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l 188 (251)
T PRK06023 158 AFALLALGEGFSAEAAQEAGLIWKIVDEEAV 188 (251)
T ss_pred HHHHHHhCCCCCHHHHHHcCCcceeeCHHHH
Confidence 3444444678999999999999999876653
No 63
>PRK08260 enoyl-CoA hydratase; Provisional
Probab=98.84 E-value=6.6e-08 Score=84.24 Aligned_cols=149 Identities=14% Similarity=0.115 Sum_probs=98.5
Q ss_pred cEEEEccc-----cCcchHHHHHHHHHhhccCCCCCceEEEEe----CCCCChhHH------------------------
Q 028125 32 RVIFIGQN-----IDEEFSNQILATMLYLDSVDDSKRVYMYIN----GPGGDVTPT------------------------ 78 (213)
Q Consensus 32 ~iI~i~G~-----I~~~~~~~l~~~l~~l~~~~~~~~I~l~IN----SpGG~v~~~------------------------ 78 (213)
.+|+|+.+ ++.++...+.+.+..++.+++.+.|+|.=+ |.|+++...
T Consensus 15 ~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (296)
T PRK08260 15 ATITLNRPDKLNAFTVTMARELIEAFDAADADDAVRAVIVTGAGRAFCAGADLSAGGNTFDLDAPRTPVEADEEDRADPS 94 (296)
T ss_pred EEEEeCCCcccCCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCCCCeecCcChHHhhhcccccccccccccccccccchh
Confidence 34666654 566777888888887776655555544211 334444320
Q ss_pred --------HHHHHHHHhcCCCeEEEEccccchHHHHHHhcCCCCcEeeccCCeEEEeCCCccCCCChHHHHHHHHHHHHH
Q 028125 79 --------LAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRV 150 (213)
Q Consensus 79 --------~~I~~~i~~~~~~v~t~~~G~aaSaa~~I~~ag~~~~r~~~p~s~i~iH~p~~~~~G~~~d~~~~~~~l~~~ 150 (213)
..++..|..+++||++.+.|.|..+|.-++++||- |++.++++|.+.....+..- +... ...+
T Consensus 95 ~~~~~~~~~~~~~~l~~~pkPvIAav~G~a~GgG~~LalacD~--ria~~~a~f~~pe~~~Gl~p---~~g~----~~~l 165 (296)
T PRK08260 95 DDGVRDGGGRVTLRIFDSLKPVIAAVNGPAVGVGATMTLAMDI--RLASTAARFGFVFGRRGIVP---EAAS----SWFL 165 (296)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEECCeeehHhHHHHHhCCE--EEeeCCCEEecchhhcCcCC---Ccch----hhhH
Confidence 12556788889999999999999999999999998 99999999987655433210 0000 0011
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHhcCCceeCHHHHHHcCCceEecCCccc
Q 028125 151 RDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRIIRPPRI 199 (213)
Q Consensus 151 ~~~~~~~~a~~tg~~~~~i~~~~~~~~~~sa~EA~~~GLiD~I~~~~~~ 199 (213)
.+. +......+++-.++.++++||+++||||+|....++
T Consensus 166 ~r~----------vG~~~A~~llltg~~~~a~eA~~~GLv~~vv~~~~l 204 (296)
T PRK08260 166 PRL----------VGLQTALEWVYSGRVFDAQEALDGGLVRSVHPPDEL 204 (296)
T ss_pred HHh----------hCHHHHHHHHHcCCccCHHHHHHCCCceeecCHHHH
Confidence 111 123444555555677999999999999999876653
No 64
>TIGR01929 menB naphthoate synthase (dihydroxynaphthoic acid synthetase). This model represents an enzyme, naphthoate synthase (dihydroxynaphthoic acid synthetase), which is involved in the fifth step of the menaquinone biosynthesis pathway. Together with o-succinylbenzoate-CoA ligase (menE: TIGR01923), this enzyme takes 2-succinylbenzoate and converts it into 1,4-di-hydroxy-2-naphthoate. Included above the trusted cutoff are two enzymes from Arabadopsis thaliana and one from Staphylococcus aureus which are identified as putative enoyl-CoA hydratase/isomerases. These enzymes group with the naphthoate synthases when building a tree and when doing BLAST searches.
Probab=98.83 E-value=7e-08 Score=82.52 Aligned_cols=148 Identities=16% Similarity=0.146 Sum_probs=97.4
Q ss_pred cEEEEccc-----cCcchHHHHHHHHHhhccCCCCCceEEEEe-----CCCCChhH----------------HHHHHHHH
Q 028125 32 RVIFIGQN-----IDEEFSNQILATMLYLDSVDDSKRVYMYIN-----GPGGDVTP----------------TLAIYDTM 85 (213)
Q Consensus 32 ~iI~i~G~-----I~~~~~~~l~~~l~~l~~~~~~~~I~l~IN-----SpGG~v~~----------------~~~I~~~i 85 (213)
.+|+|+-+ ++.++.+.+.+.+..++.+++.+.|+|.=. |-|+++.. ...+++.|
T Consensus 14 ~~itlnrp~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l 93 (259)
T TIGR01929 14 AKITINRPQVRNAFRPLTVKEIIQALDDAREDPDIGVVILTGAGDKAFCSGGDQKVRGDYGYIDDSGVHRLNVLDVQRQI 93 (259)
T ss_pred EEEEecCCccccCCCHHHHHHHHHHHHHHhhCCCeEEEEEEeCCCCceEeCcChHhHhhccccchhhHHHHHHHHHHHHH
Confidence 34666654 556667788888887766555555554321 23344321 12355678
Q ss_pred HhcCCCeEEEEccccchHHHHHHhcCCCCcEeeccCCeEEEeCCCccCC-CChHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 028125 86 QSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAAR-GQADDIRNEADELLRVRDYIFKELSRKTGQ 164 (213)
Q Consensus 86 ~~~~~~v~t~~~G~aaSaa~~I~~ag~~~~r~~~p~s~i~iH~p~~~~~-G~~~d~~~~~~~l~~~~~~~~~~~a~~tg~ 164 (213)
..+++|+++.+.|.|..+|.-++++||. |++.+++.|.+.....+.. +-.. ...+.+. .
T Consensus 94 ~~~~kPvIAav~G~a~GgG~~lalacD~--~ia~~~a~f~~pe~~~G~~p~~~~--------~~~l~~~--------v-- 153 (259)
T TIGR01929 94 RTCPKPVIAMVNGYAIGGGHVLHVVCDL--TIAAENARFGQTGPKVGSFDGGYG--------SSYLARI--------V-- 153 (259)
T ss_pred HhCCCCEEEEEcCEEehHHHHHHHhCCE--EEecCCCEecCcccccccCCCccH--------HHHHHHH--------h--
Confidence 8889999999999999999999999998 9999999998765554321 1000 0011111 1
Q ss_pred CHHHHHHHhcCCceeCHHHHHHcCCceEecCCccc
Q 028125 165 PFEKITKDLSRIKRFGSQEALEYGLIDRIIRPPRI 199 (213)
Q Consensus 165 ~~~~i~~~~~~~~~~sa~EA~~~GLiD~I~~~~~~ 199 (213)
......+++-.+..++++||+++||||+|...++.
T Consensus 154 G~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l 188 (259)
T TIGR01929 154 GQKKAREIWFLCRQYDAEQALDMGLVNTVVPLADL 188 (259)
T ss_pred HHHHHHHHHHhCCccCHHHHHHcCCcccccCHHHH
Confidence 12233445545678999999999999999876553
No 65
>PRK08788 enoyl-CoA hydratase; Validated
Probab=98.83 E-value=7e-08 Score=83.92 Aligned_cols=172 Identities=12% Similarity=0.004 Sum_probs=102.6
Q ss_pred eeeeecCCCCCCchhhhHHhhccCcEEEEccc----cCcchHHHHHHHHHhhcc-----CCCCCceEEEEe-----CCCC
Q 028125 8 KVLYRTPGEGSWQWVDLWNALYRERVIFIGQN----IDEEFSNQILATMLYLDS-----VDDSKRVYMYIN-----GPGG 73 (213)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~iI~i~G~----I~~~~~~~l~~~l~~l~~-----~~~~~~I~l~IN-----SpGG 73 (213)
+-||..+++-+..-+ .++.--...+|+++-+ ++.++.+.+.+.+..++. +++.+.|+|.=+ |.|+
T Consensus 5 ~~~~~~~~~~~~~~i-~~e~~~~ia~itl~p~~~Nal~~~~~~eL~~al~~~~~~~~~~d~~vrvVVltg~~gk~FcaG~ 83 (287)
T PRK08788 5 VRPFPEAGELSQLRV-YYEEERNVMWMYMRAQPRPCFNLELLDDIMNLQRAIRQRLDDSGLPVDFWVLASDVPGVFNLGG 83 (287)
T ss_pred ccccccccccCceEE-EEEccCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHhhccCCCCCeEEEEEEcCCCCceEeCc
Confidence 457888887663222 2222122234556521 555567778888877765 333444444222 3344
Q ss_pred ChhHH----------------HHHHHHHH------hcCCCeEEEEccccchHHHHHHhcCCCCcEeeccCCeEEEeCCCc
Q 028125 74 DVTPT----------------LAIYDTMQ------SLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAG 131 (213)
Q Consensus 74 ~v~~~----------------~~I~~~i~------~~~~~v~t~~~G~aaSaa~~I~~ag~~~~r~~~p~s~i~iH~p~~ 131 (213)
++... ..+++.+. .+++||++.+.|.|..+|.-++++||. |++.+++.|.+-....
T Consensus 84 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~pkPvIAaV~G~a~GgG~~LalacD~--ria~~~a~f~~pev~l 161 (287)
T PRK08788 84 DLALFAELIRAGDRDALLAYARACVDGVHAFHRGFGAGAISIALVQGDALGGGFEAALSHHT--IIAERGAKMGFPEILF 161 (287)
T ss_pred CHHHHhhhccccchHHHHHHHHHHHHHHHHHHHhcCCCCCEEEEECCeeehHHHHHHHhCCE--EEecCCCEeeCchhhh
Confidence 44321 11233332 578999999999999999999999998 9999999887544333
Q ss_pred cCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhcCCceeCHHHHHHcCCceEecCCccc
Q 028125 132 AARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRIIRPPRI 199 (213)
Q Consensus 132 ~~~G~~~d~~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~~~~~~sa~EA~~~GLiD~I~~~~~~ 199 (213)
+.. .+..- ...+ .+.. ......+++-.+..|+++||+++||||++...++.
T Consensus 162 Gl~---p~~g~----~~~l--------~~~v--G~~~A~ellltG~~l~A~eA~~~GLV~~vv~~~el 212 (287)
T PRK08788 162 NLF---PGMGA----YSFL--------ARRV--GPKLAEELILSGKLYTAEELHDMGLVDVLVEDGQG 212 (287)
T ss_pred CcC---CCchH----HHHH--------HHHh--hHHHHHHHHHcCCCCCHHHHHHCCCCcEecCchHH
Confidence 211 01000 0111 1112 23444555555678999999999999999877654
No 66
>PRK08139 enoyl-CoA hydratase; Validated
Probab=98.83 E-value=1.2e-07 Score=81.38 Aligned_cols=146 Identities=16% Similarity=0.190 Sum_probs=97.6
Q ss_pred cEEEEccc-----cCcchHHHHHHHHHhhccCCCCCceEEEEeCCC------CChhH---------H-------HHHHHH
Q 028125 32 RVIFIGQN-----IDEEFSNQILATMLYLDSVDDSKRVYMYINGPG------GDVTP---------T-------LAIYDT 84 (213)
Q Consensus 32 ~iI~i~G~-----I~~~~~~~l~~~l~~l~~~~~~~~I~l~INSpG------G~v~~---------~-------~~I~~~ 84 (213)
.+|+++.+ ++.++.+.+.+.+..++.+++.+.|+| .+.| +++.. . ..++..
T Consensus 22 ~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVl--tg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (266)
T PRK08139 22 ATLTLNRPQAFNALSEAMLAALQAALDAIAADPSVRVVVL--AAAGKAFCAGHDLKEMRAARGLAYFRALFARCSRVMQA 99 (266)
T ss_pred EEEEeCCcccccCCCHHHHHHHHHHHHHHhcCCCeeEEEE--ecCCCcceeccCHHHHhcccchhHHHHHHHHHHHHHHH
Confidence 34666654 566677788888877765554554444 3433 44321 0 134556
Q ss_pred HHhcCCCeEEEEccccchHHHHHHhcCCCCcEeeccCCeEEEeCCCccCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 028125 85 MQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQ 164 (213)
Q Consensus 85 i~~~~~~v~t~~~G~aaSaa~~I~~ag~~~~r~~~p~s~i~iH~p~~~~~G~~~d~~~~~~~l~~~~~~~~~~~a~~tg~ 164 (213)
|..+++||++.+.|.|..+|.-++++||- |++.++++|.+-....+...... .. .+. +. +
T Consensus 100 l~~~~kPvIAav~G~a~GgG~~lalacD~--ria~~~a~f~~pe~~~Gl~p~~~---~~--~l~-----------r~--v 159 (266)
T PRK08139 100 IVALPQPVIARVHGIATAAGCQLVASCDL--AVAADTARFAVPGVNIGLFCSTP---MV--ALS-----------RN--V 159 (266)
T ss_pred HHhCCCCEEEEECceeeHHHHHHHHhCCE--EEEeCCCEEeCcccCcCCCCCcc---HH--HHH-----------HH--h
Confidence 77889999999999999999999999998 99999999876555444321110 00 011 11 2
Q ss_pred CHHHHHHHhcCCceeCHHHHHHcCCceEecCCccc
Q 028125 165 PFEKITKDLSRIKRFGSQEALEYGLIDRIIRPPRI 199 (213)
Q Consensus 165 ~~~~i~~~~~~~~~~sa~EA~~~GLiD~I~~~~~~ 199 (213)
......+++-.++.++++||+++||||+|....+.
T Consensus 160 G~~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l 194 (266)
T PRK08139 160 PRKQAMEMLLTGEFIDAATAREWGLVNRVVPADAL 194 (266)
T ss_pred CHHHHHHHHHcCCccCHHHHHHcCCccEeeChhHH
Confidence 23444555555678999999999999999986553
No 67
>PRK07854 enoyl-CoA hydratase; Provisional
Probab=98.83 E-value=1.1e-07 Score=80.55 Aligned_cols=144 Identities=15% Similarity=0.170 Sum_probs=94.0
Q ss_pred cEEEEccc-----cCcchHHHHHHHHHhhccCCCCCceEEE----EeCCCCChhH----------HHHHHHHHHhcCCCe
Q 028125 32 RVIFIGQN-----IDEEFSNQILATMLYLDSVDDSKRVYMY----INGPGGDVTP----------TLAIYDTMQSLKSPV 92 (213)
Q Consensus 32 ~iI~i~G~-----I~~~~~~~l~~~l~~l~~~~~~~~I~l~----INSpGG~v~~----------~~~I~~~i~~~~~~v 92 (213)
.+|+|+-+ ++.++...+.+.+..++. ++.+.|+|. .=|.|+++.. ...+++.|..+++|+
T Consensus 11 ~~itlnrp~~~Nal~~~~~~~l~~al~~~~~-~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~l~~~~kP~ 89 (243)
T PRK07854 11 LTIELQRPERRNALNAELCEELREAVRKAVD-ESARAIVLTGQGTVFCAGADLSGDVYADDFPDALIEMLHAIDAAPVPV 89 (243)
T ss_pred EEEEeCCCccccCCCHHHHHHHHHHHHHHhc-CCceEEEEECCCCceecccCCccchhHHHHHHHHHHHHHHHHhCCCCE
Confidence 35667654 677777888888877663 345444443 1133455431 134566788889999
Q ss_pred EEEEccccchHHHHHHhcCCCCcEeeccCCeEEEeCCCccCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHH
Q 028125 93 GTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKD 172 (213)
Q Consensus 93 ~t~~~G~aaSaa~~I~~ag~~~~r~~~p~s~i~iH~p~~~~~G~~~d~~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~ 172 (213)
++.+.|.|..+|.-++++||- |++.++++|.+-....+.. + +.. ....+ .+..| .....++
T Consensus 90 Iaav~G~a~GgG~~lal~cD~--~ia~~~a~f~~pe~~~G~~--p-~~g----~~~~l--------~~~~G--~~~a~~l 150 (243)
T PRK07854 90 IAAINGPAIGAGLQLAMACDL--RVVAPEAYFQFPVAKYGIA--L-DNW----TIRRL--------SSLVG--GGRARAM 150 (243)
T ss_pred EEEecCcccccHHHHHHhCCE--EEEcCCCEEeccccccccC--C-Ccc----HHHHH--------HHHhC--HHHHHHH
Confidence 999999999999999999998 9999999987533333211 0 000 00111 11122 3344455
Q ss_pred hcCCceeCHHHHHHcCCceEecC
Q 028125 173 LSRIKRFGSQEALEYGLIDRIIR 195 (213)
Q Consensus 173 ~~~~~~~sa~EA~~~GLiD~I~~ 195 (213)
+-.+..|+++||+++||||+|.+
T Consensus 151 ~ltg~~~~a~eA~~~Glv~~v~~ 173 (243)
T PRK07854 151 LLGAEKLTAEQALATGMANRIGT 173 (243)
T ss_pred HHcCCCcCHHHHHHCCCcccccC
Confidence 54567899999999999999964
No 68
>PLN02921 naphthoate synthase
Probab=98.83 E-value=1.1e-07 Score=84.15 Aligned_cols=148 Identities=14% Similarity=0.106 Sum_probs=98.9
Q ss_pred EEEEccc-----cCcchHHHHHHHHHhhccCCCCCceEEEEe-----CCCCChhHH----------------HHHHHHHH
Q 028125 33 VIFIGQN-----IDEEFSNQILATMLYLDSVDDSKRVYMYIN-----GPGGDVTPT----------------LAIYDTMQ 86 (213)
Q Consensus 33 iI~i~G~-----I~~~~~~~l~~~l~~l~~~~~~~~I~l~IN-----SpGG~v~~~----------------~~I~~~i~ 86 (213)
+|.|+-+ ++.++...+.+.+..++.++..+.|+|.=+ |.|+++... ..++..|+
T Consensus 79 ~ItLnrP~~~Nal~~~~~~eL~~al~~~~~d~~vrvVVLtg~G~k~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~l~ 158 (327)
T PLN02921 79 KITINRPERRNAFRPRTVKELQRAFNDARDDSSVGVIILTGKGTKAFCSGGDQAVRGKDGYVGPDDAGRLNVLDLQIQIR 158 (327)
T ss_pred EEEECCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEecCCCCceecCcChhhhhcccccchhHHHHHHHHHHHHHHH
Confidence 4556544 566677888888887776655554444321 344554310 12456778
Q ss_pred hcCCCeEEEEccccchHHHHHHhcCCCCcEeeccCCeEEEeCCCccCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCCCH
Q 028125 87 SLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPF 166 (213)
Q Consensus 87 ~~~~~v~t~~~G~aaSaa~~I~~ag~~~~r~~~p~s~i~iH~p~~~~~G~~~d~~~~~~~l~~~~~~~~~~~a~~tg~~~ 166 (213)
.+++||++.+.|.|..+|.-++++||- |++.+++.|.+..+..+..... .. ...+. +. +..
T Consensus 159 ~~~kPvIAaVnG~a~GGG~~LalacD~--riA~~~A~f~~pe~~~Gl~p~~--gg-----~~~L~--------rl--iG~ 219 (327)
T PLN02921 159 RLPKPVIAMVAGYAVGGGHILHMVCDL--TIAADNAVFGQTGPKVGSFDAG--YG-----SSIMA--------RL--VGQ 219 (327)
T ss_pred hCCCCEEEEECCEEecHHHHHHHhCCE--EEEeCCCEEeCcccccCCCCCc--cH-----HHHHH--------HH--hCH
Confidence 889999999999999999999999998 9999999998766654421100 00 00111 11 123
Q ss_pred HHHHHHhcCCceeCHHHHHHcCCceEecCCccc
Q 028125 167 EKITKDLSRIKRFGSQEALEYGLIDRIIRPPRI 199 (213)
Q Consensus 167 ~~i~~~~~~~~~~sa~EA~~~GLiD~I~~~~~~ 199 (213)
....+++-.++.|+++||+++||||+|...++.
T Consensus 220 ~~A~ellltG~~~~A~eA~~~GLV~~vv~~~~l 252 (327)
T PLN02921 220 KKAREMWFLARFYTASEALKMGLVNTVVPLDEL 252 (327)
T ss_pred HHHHHHHHcCCcCCHHHHHHCCCceEEeCHHHH
Confidence 444555555678999999999999999977654
No 69
>PLN03214 probable enoyl-CoA hydratase/isomerase; Provisional
Probab=98.82 E-value=7.6e-08 Score=83.23 Aligned_cols=151 Identities=13% Similarity=0.083 Sum_probs=100.1
Q ss_pred cEEEEccc----cCcchHHHHHHHHHhhccCCCCCceEEEEe------CCCCChhHH-----------------HHHHHH
Q 028125 32 RVIFIGQN----IDEEFSNQILATMLYLDSVDDSKRVYMYIN------GPGGDVTPT-----------------LAIYDT 84 (213)
Q Consensus 32 ~iI~i~G~----I~~~~~~~l~~~l~~l~~~~~~~~I~l~IN------SpGG~v~~~-----------------~~I~~~ 84 (213)
.+|+++.+ ++.++...+.+.+..++.+++.+.|+|.=+ |.|+++..- ..++..
T Consensus 23 a~itlnr~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (278)
T PLN03214 23 AVVWLAKEPVNSMTLAMWRSLDDALTALENDPTVRGVVFASGLRRDVFTAGNDIAELYAPKTSAARYAEFWLTQTTFLVR 102 (278)
T ss_pred EEEEECCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeCCCCCCcccCccCHHHHhccccchHHHHHHHHHHHHHHHH
Confidence 45677654 555667888888888876666666655321 344444320 124456
Q ss_pred HHhcCCCeEEEEccccchHHHHHHhcCCCCcEeeccCCeEEEeCCCccCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 028125 85 MQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQ 164 (213)
Q Consensus 85 i~~~~~~v~t~~~G~aaSaa~~I~~ag~~~~r~~~p~s~i~iH~p~~~~~G~~~d~~~~~~~l~~~~~~~~~~~a~~tg~ 164 (213)
|+.+++||++.+.|.|..+|.-++++||. |++.+++.|.+.....+.. ..+... .. .+.+. +
T Consensus 103 l~~~~kPvIAaV~G~a~GgG~~lalacD~--ria~~~a~f~~pe~~lGl~--~p~~~~----~~--------~l~~~--~ 164 (278)
T PLN03214 103 LLRSRLATVCAIRGACPAGGCAVSLCCDY--RLQTTEGTMGLNEVALGIP--VPKFWA----RL--------FMGRV--I 164 (278)
T ss_pred HHcCCCCEEEEEcCcccchHHHHHHhCCE--EEecCCCEecCcHHHhCCC--CCChhH----HH--------HHHHh--c
Confidence 77889999999999999999999999998 9999999987644433321 001000 00 11122 2
Q ss_pred CHHHHHHHhcCCceeCHHHHHHcCCceEecCCcccc
Q 028125 165 PFEKITKDLSRIKRFGSQEALEYGLIDRIIRPPRIK 200 (213)
Q Consensus 165 ~~~~i~~~~~~~~~~sa~EA~~~GLiD~I~~~~~~~ 200 (213)
......+++-.++.|+++||+++||||+|...++..
T Consensus 165 G~~~a~~llltg~~~~a~eA~~~Glv~~vv~~~~l~ 200 (278)
T PLN03214 165 DRKVAESLLLRGRLVRPAEAKQLGLIDEVVPAAALM 200 (278)
T ss_pred CHHHHHHHHHcCCccCHHHHHHcCCCcEecChHHHH
Confidence 345555566557789999999999999998766543
No 70
>PRK06494 enoyl-CoA hydratase; Provisional
Probab=98.82 E-value=1.3e-07 Score=80.82 Aligned_cols=149 Identities=13% Similarity=0.147 Sum_probs=96.5
Q ss_pred cEEEEccc-----cCcchHHHHHHHHHhhccCCCCCceEEEEe-----CCCCChhHHH----------HH--HHHHHhcC
Q 028125 32 RVIFIGQN-----IDEEFSNQILATMLYLDSVDDSKRVYMYIN-----GPGGDVTPTL----------AI--YDTMQSLK 89 (213)
Q Consensus 32 ~iI~i~G~-----I~~~~~~~l~~~l~~l~~~~~~~~I~l~IN-----SpGG~v~~~~----------~I--~~~i~~~~ 89 (213)
.+|+++-+ ++.++.+.+.+.+..++.+++.+.|+|.=+ |.|+++.... .+ +..+..++
T Consensus 15 ~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (259)
T PRK06494 15 TIVTLNRPEVMNALHLDAHFELEEVFDDFAADPEQWVAIVTGAGDKAFSAGNDLKEQAAGGKRGWPESGFGGLTSRFDLD 94 (259)
T ss_pred EEEEEcCccccCCCCHHHHHHHHHHHHHHhhCCCcEEEEEEcCCCCceeccccHHhHhhcCcchhhhHHHHHHHHHhcCC
Confidence 34666654 555667788888887776665665555322 2255553210 11 12234678
Q ss_pred CCeEEEEccccchHHHHHHhcCCCCcEeeccCCeEEEeCCCccCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHH
Q 028125 90 SPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKI 169 (213)
Q Consensus 90 ~~v~t~~~G~aaSaa~~I~~ag~~~~r~~~p~s~i~iH~p~~~~~G~~~d~~~~~~~l~~~~~~~~~~~a~~tg~~~~~i 169 (213)
+||++.+.|.|..+|.-++++||. |++.++++|.+.....+..-..-- ...+ .+. +.....
T Consensus 95 kPvIaav~G~a~GgG~~lalacD~--ria~~~a~f~~pe~~~Gl~p~~g~-------~~~l--------~~~--vg~~~a 155 (259)
T PRK06494 95 KPIIAAVNGVAMGGGFELALACDL--IVAAENATFALPEPRVGLAALAGG-------LHRL--------PRQ--IGLKRA 155 (259)
T ss_pred CCEEEEECCEEecHHHHHHHhCCE--EEEeCCCEEeCcccccCCCCCchH-------HHHH--------HHH--cCHHHH
Confidence 999999999999999999999998 999999999875554432110000 0111 111 234444
Q ss_pred HHHhcCCceeCHHHHHHcCCceEecCCccc
Q 028125 170 TKDLSRIKRFGSQEALEYGLIDRIIRPPRI 199 (213)
Q Consensus 170 ~~~~~~~~~~sa~EA~~~GLiD~I~~~~~~ 199 (213)
.+++-.+..++++||+++||||+|....+.
T Consensus 156 ~~lll~g~~~~a~eA~~~GLv~~vv~~~~l 185 (259)
T PRK06494 156 MGMILTGRRVTAREGLELGFVNEVVPAGEL 185 (259)
T ss_pred HHHHHcCCcCCHHHHHHcCCCcEecCHhHH
Confidence 455555678999999999999999886553
No 71
>PRK07327 enoyl-CoA hydratase; Provisional
Probab=98.82 E-value=9.8e-08 Score=82.02 Aligned_cols=148 Identities=14% Similarity=0.079 Sum_probs=95.5
Q ss_pred cEEEEccc-----cCcchHHHHHHHHHhhccCCCCCceEEEEe----CCCCChhHH-----------------HHHHHHH
Q 028125 32 RVIFIGQN-----IDEEFSNQILATMLYLDSVDDSKRVYMYIN----GPGGDVTPT-----------------LAIYDTM 85 (213)
Q Consensus 32 ~iI~i~G~-----I~~~~~~~l~~~l~~l~~~~~~~~I~l~IN----SpGG~v~~~-----------------~~I~~~i 85 (213)
.+|+++.+ ++.++...+.+.+..++.+++.+.|+|.=. |.|+++... ..++..|
T Consensus 23 ~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l 102 (268)
T PRK07327 23 LEIVLNGPGALNAADARMHRELADIWRDVDRDPDVRVVLIRGEGKAFSAGGDLALVEEMADDFEVRARVWREARDLVYNV 102 (268)
T ss_pred EEEEEcCCCccCCCCHHHHHHHHHHHHHhhhCCCceEEEEECCCCCcccccCHHHHhhccCcHHHHHHHHHHHHHHHHHH
Confidence 34666655 566677788888888876665565555311 333444210 1234556
Q ss_pred HhcCCCeEEEEccccchHHHHHHhcCCCCcEeeccCCeEEEeCCCccCC-CChHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 028125 86 QSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAAR-GQADDIRNEADELLRVRDYIFKELSRKTGQ 164 (213)
Q Consensus 86 ~~~~~~v~t~~~G~aaSaa~~I~~ag~~~~r~~~p~s~i~iH~p~~~~~-G~~~d~~~~~~~l~~~~~~~~~~~a~~tg~ 164 (213)
..+++||++.+.|.|..+|.-++++||. |++.++++|.+-....+.. +.... ..+.+. .
T Consensus 103 ~~~~kPvIAav~G~a~GgG~~lalacD~--ria~~~a~f~~pe~~~Gl~p~~g~~--------~~l~~~--------v-- 162 (268)
T PRK07327 103 INCDKPIVSAIHGPAVGAGLVAALLADI--SIAAKDARIIDGHTRLGVAAGDHAA--------IVWPLL--------C-- 162 (268)
T ss_pred HcCCCCEEEEEcCeeeehhhHHHHhCCE--EEecCCCEEeCcccccCCCCCcchh--------hHHHHH--------h--
Confidence 7788999999999999999999999998 9999999987543333321 11000 011110 1
Q ss_pred CHHHHHHHhcCCceeCHHHHHHcCCceEecCCccc
Q 028125 165 PFEKITKDLSRIKRFGSQEALEYGLIDRIIRPPRI 199 (213)
Q Consensus 165 ~~~~i~~~~~~~~~~sa~EA~~~GLiD~I~~~~~~ 199 (213)
......+++-.+..|+++||+++||||+|...++.
T Consensus 163 G~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l 197 (268)
T PRK07327 163 GMAKAKYYLLLCEPVSGEEAERIGLVSLAVDDDEL 197 (268)
T ss_pred CHHHHHHHHHcCCccCHHHHHHcCCcceecCHHHH
Confidence 12233344445678999999999999999876553
No 72
>PLN02664 enoyl-CoA hydratase/delta3,5-delta2,4-dienoyl-CoA isomerase
Probab=98.82 E-value=1.1e-07 Score=82.09 Aligned_cols=146 Identities=14% Similarity=0.134 Sum_probs=95.8
Q ss_pred cEEEEccc-----cCcchHHHHHHHHHhhccCCCCCceEEEE----eCCCCChhHH------------------------
Q 028125 32 RVIFIGQN-----IDEEFSNQILATMLYLDSVDDSKRVYMYI----NGPGGDVTPT------------------------ 78 (213)
Q Consensus 32 ~iI~i~G~-----I~~~~~~~l~~~l~~l~~~~~~~~I~l~I----NSpGG~v~~~------------------------ 78 (213)
.+|.|+-+ ++.++.+.+.+.+..++.+++.+.|+|.= =|-|+++...
T Consensus 19 ~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vrvvVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (275)
T PLN02664 19 FHLNLNRPSQRNALSLDFFTEFPKALSSLDQNPNVSVIILSGAGDHFCSGIDLKTLNSISEQSSSGDRGRSGERLRRKIK 98 (275)
T ss_pred EEEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCcEEEEEECCCCceeeCcChHHhhhcccccccccchhhHHHHHHHHH
Confidence 34667655 66677788888888777665555444421 1233444311
Q ss_pred --HHHHHHHHhcCCCeEEEEccccchHHHHHHhcCCCCcEeeccCCeEEEeCCCccCCCChHHHHHHHHHHHHHHHHHHH
Q 028125 79 --LAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFK 156 (213)
Q Consensus 79 --~~I~~~i~~~~~~v~t~~~G~aaSaa~~I~~ag~~~~r~~~p~s~i~iH~p~~~~~G~~~d~~~~~~~l~~~~~~~~~ 156 (213)
..+++.|..+++||++.+.|.|..+|.-++++||- |++.+++.|.+-....+... +... ...+.+
T Consensus 99 ~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~--~ia~~~a~f~~pe~~~Gl~p---~~g~----~~~l~~---- 165 (275)
T PLN02664 99 FLQDAITAIEQCRKPVIAAIHGACIGGGVDIVTACDI--RYCSEDAFFSVKEVDLAITA---DLGT----LQRLPS---- 165 (275)
T ss_pred HHHHHHHHHHhCCCCEEEEECCccccchHHHHHhCCE--EEecCCCEeccHHHhhCCCC---CccH----HHHHHH----
Confidence 13456678889999999999999999999999998 99999999876444333211 1000 111111
Q ss_pred HHHHHhCCCHHHHHHHhcCCceeCHHHHHHcCCceEecCC
Q 028125 157 ELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRIIRP 196 (213)
Q Consensus 157 ~~a~~tg~~~~~i~~~~~~~~~~sa~EA~~~GLiD~I~~~ 196 (213)
. .......+++-.+..|+++||+++||||+|..+
T Consensus 166 ----~--vG~~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~ 199 (275)
T PLN02664 166 ----I--VGYGNAMELALTGRRFSGSEAKELGLVSRVFGS 199 (275)
T ss_pred ----H--hCHHHHHHHHHhCCCCCHHHHHHcCCCceeeCC
Confidence 1 222334445444678999999999999999874
No 73
>PRK09245 enoyl-CoA hydratase; Provisional
Probab=98.82 E-value=1.1e-07 Score=81.57 Aligned_cols=149 Identities=15% Similarity=0.132 Sum_probs=95.0
Q ss_pred cEEEEccc-----cCc-chHHHHHHHHHhhccCCCCCceEEEEe----CCCCChhHH----------------------H
Q 028125 32 RVIFIGQN-----IDE-EFSNQILATMLYLDSVDDSKRVYMYIN----GPGGDVTPT----------------------L 79 (213)
Q Consensus 32 ~iI~i~G~-----I~~-~~~~~l~~~l~~l~~~~~~~~I~l~IN----SpGG~v~~~----------------------~ 79 (213)
.+|.++-+ ++. ++.+.+.+.+..++.+++.+.|+|.=+ |.|+++..- .
T Consensus 14 ~~itlnrp~~~Nal~~~~~~~~l~~~l~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (266)
T PRK09245 14 VTLTMNRPETRNALSDNDAVDALVAACAAINADRSVRAVILTGAGTAFSSGGNVKDMRARVGAFGGSPADIRQGYRHGIQ 93 (266)
T ss_pred EEEEECCcccccCCChHHHHHHHHHHHHHHhcCCCceEEEEECCCCCcccCcCHHHHhhccccccccchhHHHHHHHHHH
Confidence 34666554 443 556677777777766555555555321 334443211 1
Q ss_pred HHHHHHHhcCCCeEEEEccccchHHHHHHhcCCCCcEeeccCCeEEEeCCCccCCCChHHHHHHHHHHHHHHHHHHHHHH
Q 028125 80 AIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELS 159 (213)
Q Consensus 80 ~I~~~i~~~~~~v~t~~~G~aaSaa~~I~~ag~~~~r~~~p~s~i~iH~p~~~~~G~~~d~~~~~~~l~~~~~~~~~~~a 159 (213)
.+++.|..+++|+++.+.|.|..+|.-++++||- |++.+++.|.+.....+..-..-- ...+.+
T Consensus 94 ~~~~~l~~~~kpvIaav~G~a~GgG~~lalacD~--ria~~~a~f~~pe~~~G~~p~~g~-------~~~l~~------- 157 (266)
T PRK09245 94 RIPLALYNLEVPVIAAVNGPAIGAGCDLACMCDI--RIASETARFAESFVKLGLIPGDGG-------AWLLPR------- 157 (266)
T ss_pred HHHHHHHcCCCCEEEEECCEeecHHHHHHHhCCE--EEecCCCEEcccccccCcCCCcch-------hhhHHH-------
Confidence 2456777889999999999999999999999998 999999998765544332100000 001111
Q ss_pred HHhCCCHHHHHHHhcCCceeCHHHHHHcCCceEecCCccc
Q 028125 160 RKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRIIRPPRI 199 (213)
Q Consensus 160 ~~tg~~~~~i~~~~~~~~~~sa~EA~~~GLiD~I~~~~~~ 199 (213)
.. ......+++-.+..|+++||+++||||+|....+.
T Consensus 158 -~v--G~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l 194 (266)
T PRK09245 158 -II--GMARAAEMAFTGDAIDAATALEWGLVSRVVPADQL 194 (266)
T ss_pred -Hh--hHHHHHHHHHcCCCcCHHHHHHcCCcceecCHHHH
Confidence 11 12233444444678999999999999999876653
No 74
>PRK07509 enoyl-CoA hydratase; Provisional
Probab=98.81 E-value=1e-07 Score=81.51 Aligned_cols=145 Identities=17% Similarity=0.165 Sum_probs=95.9
Q ss_pred cEEEEccc-----cCcchHHHHHHHHHhhccCCCCCceEEE----EeCCCCChhHH----------------------HH
Q 028125 32 RVIFIGQN-----IDEEFSNQILATMLYLDSVDDSKRVYMY----INGPGGDVTPT----------------------LA 80 (213)
Q Consensus 32 ~iI~i~G~-----I~~~~~~~l~~~l~~l~~~~~~~~I~l~----INSpGG~v~~~----------------------~~ 80 (213)
.+|+|+-+ ++.++.+.+.+.+..++.+++.+.|+|. .=|.|+++... ..
T Consensus 14 ~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (262)
T PRK07509 14 ADVRLNRPDKMNALDFAMFEELIATIKRLKKDRGIRAVILSGEGGAFCAGLDVKSVASSPGNAVKLLFKRLPGNANLAQR 93 (262)
T ss_pred EEEEecCcccccCCCHHHHHHHHHHHHHHhhCCCCeEEEEECCCCCcCCCcCHHHHhcccchhhhhHhhhhHHHHHHHHH
Confidence 45667654 5667778888888887766555555552 01344444210 11
Q ss_pred HHHHHHhcCCCeEEEEccccchHHHHHHhcCCCCcEeeccCCeEEEeCCCccCCCChHHHHHHHHHHHHHHHHHHHHHHH
Q 028125 81 IYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSR 160 (213)
Q Consensus 81 I~~~i~~~~~~v~t~~~G~aaSaa~~I~~ag~~~~r~~~p~s~i~iH~p~~~~~G~~~d~~~~~~~l~~~~~~~~~~~a~ 160 (213)
++..|+.+++||++.+.|.|..+|.-++++||. |++.+++.|.+.....+..-.. . ....+.+
T Consensus 94 ~~~~~~~~~kpvIaav~G~a~GgG~~lalacD~--~ia~~~a~f~~pe~~~Gl~p~~---g----~~~~l~~-------- 156 (262)
T PRK07509 94 VSLGWRRLPVPVIAALEGVCFGGGLQIALGADI--RIAAPDTKLSIMEAKWGLVPDM---A----GTVSLRG-------- 156 (262)
T ss_pred HHHHHHhCCCCEEEEECCeeecchHHHHHhCCE--EEecCCCEeecchhccCCCCCc---h----HHHHHHH--------
Confidence 334567889999999999999999999999998 9999999988755444321100 0 0011111
Q ss_pred HhCCCHHHHHHHhcCCceeCHHHHHHcCCceEecC
Q 028125 161 KTGQPFEKITKDLSRIKRFGSQEALEYGLIDRIIR 195 (213)
Q Consensus 161 ~tg~~~~~i~~~~~~~~~~sa~EA~~~GLiD~I~~ 195 (213)
. +......+++-.++.++++||+++||||++.+
T Consensus 157 ~--~g~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~ 189 (262)
T PRK07509 157 L--VRKDVARELTYTARVFSAEEALELGLVTHVSD 189 (262)
T ss_pred H--hCHHHHHHHHHcCCCcCHHHHHHcCChhhhhc
Confidence 1 23344455555567899999999999999975
No 75
>TIGR02280 PaaB1 phenylacetate degradation probable enoyl-CoA hydratase paaB. This family of proteins are found within apparent operons for the degradation of phenylacetic acid. These proteins contain the enoyl-CoA hydratase domain as detected by pfam00378. This activity is consistent with current hypotheses for the degradation pathway which involve the ligation of phenylacetate with coenzyme A (paaF), hydroxylation (paaGHIJK), ring-opening (paaN) and degradation of the resulting fatty acid-like compound to a Krebs cycle intermediate (paaABCDE).
Probab=98.81 E-value=1.1e-07 Score=81.21 Aligned_cols=148 Identities=13% Similarity=0.103 Sum_probs=95.9
Q ss_pred cEEEEccc-----cCcchHHHHHHHHHhhccCCCCCceEEEEe----CCCCChhH-------------H-----HHHHHH
Q 028125 32 RVIFIGQN-----IDEEFSNQILATMLYLDSVDDSKRVYMYIN----GPGGDVTP-------------T-----LAIYDT 84 (213)
Q Consensus 32 ~iI~i~G~-----I~~~~~~~l~~~l~~l~~~~~~~~I~l~IN----SpGG~v~~-------------~-----~~I~~~ 84 (213)
.+|+++-+ ++.++...+.+.+..++.++ .+.|+|.=+ |.|+++.. . ..+++.
T Consensus 10 ~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~-v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (256)
T TIGR02280 10 ARLTLNRPDKLNSFTAEMHLELREALERVERDD-ARALMLTGAGRGFCAGQDLSERNPTPGGAPDLGRTIETFYNPLVRR 88 (256)
T ss_pred EEEEecCcccccCCCHHHHHHHHHHHHHHhcCC-cEEEEEECCCCCcccCcCHHHHhhccccchhHHHHHHHHHHHHHHH
Confidence 34666654 56677788888888887655 665555311 23344321 0 123456
Q ss_pred HHhcCCCeEEEEccccchHHHHHHhcCCCCcEeeccCCeEEEeCCCccCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 028125 85 MQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQ 164 (213)
Q Consensus 85 i~~~~~~v~t~~~G~aaSaa~~I~~ag~~~~r~~~p~s~i~iH~p~~~~~G~~~d~~~~~~~l~~~~~~~~~~~a~~tg~ 164 (213)
|..+++||++.+.|.|..+|.-++++||. |++.+++.|.+-....+.. + ...- ...+. +. +
T Consensus 89 l~~~~kPvIaav~G~a~GgG~~lala~D~--ria~~~a~f~~pe~~lG~~--p-~~g~----~~~l~--------~~--v 149 (256)
T TIGR02280 89 LRALPLPVVCAVNGVAAGAGANLALACDI--VLAAESARFIQAFAKIGLI--P-DSGG----TWSLP--------RL--V 149 (256)
T ss_pred HHhCCCCEEEEECCeeehHHHHHHHhCCE--EEecCCCEEeChhhhcCCC--C-CccH----HHHHH--------HH--h
Confidence 78889999999999999999999999998 9999999987543333211 0 0000 00111 11 1
Q ss_pred CHHHHHHHhcCCceeCHHHHHHcCCceEecCCccc
Q 028125 165 PFEKITKDLSRIKRFGSQEALEYGLIDRIIRPPRI 199 (213)
Q Consensus 165 ~~~~i~~~~~~~~~~sa~EA~~~GLiD~I~~~~~~ 199 (213)
......+++-.+..++++||+++||||+|...++.
T Consensus 150 G~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l 184 (256)
T TIGR02280 150 GRARAMGLAMLGEKLDARTAASWGLIWQVVDDAAL 184 (256)
T ss_pred CHHHHHHHHHcCCCCCHHHHHHcCCcceeeChHHH
Confidence 22333444445677999999999999999877653
No 76
>PRK05864 enoyl-CoA hydratase; Provisional
Probab=98.81 E-value=6.1e-08 Score=83.64 Aligned_cols=150 Identities=13% Similarity=0.098 Sum_probs=97.8
Q ss_pred cEEEEccc-----cCcchHHHHHHHHHhhccCCCCCceEEEEe----CCCCChhHH----------------------HH
Q 028125 32 RVIFIGQN-----IDEEFSNQILATMLYLDSVDDSKRVYMYIN----GPGGDVTPT----------------------LA 80 (213)
Q Consensus 32 ~iI~i~G~-----I~~~~~~~l~~~l~~l~~~~~~~~I~l~IN----SpGG~v~~~----------------------~~ 80 (213)
.+|.++-+ ++.++.+.+.+.+..++.+++.+.|+|.=+ |.|+++... ..
T Consensus 21 ~~itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~vrvvVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (276)
T PRK05864 21 ALITLNRPERMNSMAFDVMVPLKEALAEVSYDNSVRVVVLTGAGRGFSSGADHKSAGVVPHVEGLTRPTYALRSMELLDD 100 (276)
T ss_pred EEEEecCCccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCeecCcchhhhhcccccccccchhHHHHHHHHHHH
Confidence 34667655 666677788888888776665565555321 344554321 13
Q ss_pred HHHHHHhcCCCeEEEEccccchHHHHHHhcCCCCcEeeccCCeEEEeCCCccCCCChHHHHHHHHHHHHHHHHHHHHHHH
Q 028125 81 IYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSR 160 (213)
Q Consensus 81 I~~~i~~~~~~v~t~~~G~aaSaa~~I~~ag~~~~r~~~p~s~i~iH~p~~~~~G~~~d~~~~~~~l~~~~~~~~~~~a~ 160 (213)
+++.|..+++||++.+.|.|..+|.-++++||- |++.+++.|.+-....+..- .+... ... +.+
T Consensus 101 ~~~~l~~~~kPvIaav~G~a~GgG~~LalacD~--ria~~~a~f~~pe~~~Gl~p--~~~g~----~~~--------l~~ 164 (276)
T PRK05864 101 VILALRRLHQPVIAAVNGPAIGGGLCLALAADI--RVASSSAYFRAAGINNGLTA--SELGL----SYL--------LPR 164 (276)
T ss_pred HHHHHHhCCCCEEEEECCEeehhHHHHHHhCCE--EEeeCCCEecCcccccCCCC--CCcch----hee--------hHh
Confidence 456677889999999999999999999999998 99999998875443332210 00000 000 111
Q ss_pred HhCCCHHHHHHHhcCCceeCHHHHHHcCCceEecCCccc
Q 028125 161 KTGQPFEKITKDLSRIKRFGSQEALEYGLIDRIIRPPRI 199 (213)
Q Consensus 161 ~tg~~~~~i~~~~~~~~~~sa~EA~~~GLiD~I~~~~~~ 199 (213)
.. ......+++-.+..++++||+++||||+|...++.
T Consensus 165 ~v--G~~~A~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l 201 (276)
T PRK05864 165 AI--GSSRAFEIMLTGRDVDAEEAERIGLVSRQVPDEQL 201 (276)
T ss_pred hh--CHHHHHHHHHcCCccCHHHHHHcCCcceeeCHHHH
Confidence 12 23344444444567899999999999999877654
No 77
>PRK07396 dihydroxynaphthoic acid synthetase; Validated
Probab=98.81 E-value=1.2e-07 Score=81.61 Aligned_cols=148 Identities=16% Similarity=0.160 Sum_probs=98.9
Q ss_pred cEEEEccc-----cCcchHHHHHHHHHhhccCCCCCceEEEEe-----CCCCChhH----------------HHHHHHHH
Q 028125 32 RVIFIGQN-----IDEEFSNQILATMLYLDSVDDSKRVYMYIN-----GPGGDVTP----------------TLAIYDTM 85 (213)
Q Consensus 32 ~iI~i~G~-----I~~~~~~~l~~~l~~l~~~~~~~~I~l~IN-----SpGG~v~~----------------~~~I~~~i 85 (213)
.+|+|+-+ ++.++...+.+.+..++.+++.+.|+|.=+ |.|+++.. ...+++.|
T Consensus 24 ~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l 103 (273)
T PRK07396 24 AKITINRPEVRNAFRPKTVKEMIDAFADARDDDNIGVIILTGAGDKAFCSGGDQKVRGYGGYVDDDGVPRLNVLDLQRLI 103 (273)
T ss_pred EEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCceEEEEEeCCCCceEeCcChhhhhcccccchhhhhhhHHHHHHHHH
Confidence 34666654 666777888888888876666666655321 33454421 01245677
Q ss_pred HhcCCCeEEEEccccchHHHHHHhcCCCCcEeeccCCeEEEeCCCccCC-CChHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 028125 86 QSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAAR-GQADDIRNEADELLRVRDYIFKELSRKTGQ 164 (213)
Q Consensus 86 ~~~~~~v~t~~~G~aaSaa~~I~~ag~~~~r~~~p~s~i~iH~p~~~~~-G~~~d~~~~~~~l~~~~~~~~~~~a~~tg~ 164 (213)
..+++||++.+.|.|..+|.-++++||. |++.+++.|.+-.+..+.. +-.. ...+. +..
T Consensus 104 ~~~~kPvIAav~G~a~GgG~~lalacD~--ria~~~a~f~~pe~~~Gl~p~~~~--------~~~l~--------~~v-- 163 (273)
T PRK07396 104 RTCPKPVIAMVAGYAIGGGHVLHLVCDL--TIAADNAIFGQTGPKVGSFDGGYG--------ASYLA--------RIV-- 163 (273)
T ss_pred HhCCCCEEEEECCEEehHHHHHHHhCCE--EEeeCCcEEecccccccccCCchH--------HHHHH--------HHh--
Confidence 8889999999999999999999999998 9999999988655543321 1000 00111 111
Q ss_pred CHHHHHHHhcCCceeCHHHHHHcCCceEecCCccc
Q 028125 165 PFEKITKDLSRIKRFGSQEALEYGLIDRIIRPPRI 199 (213)
Q Consensus 165 ~~~~i~~~~~~~~~~sa~EA~~~GLiD~I~~~~~~ 199 (213)
......+++-.+..|+++||+++||||+|....+.
T Consensus 164 G~~~a~~l~ltg~~~~A~eA~~~GLv~~vv~~~~l 198 (273)
T PRK07396 164 GQKKAREIWFLCRQYDAQEALDMGLVNTVVPLADL 198 (273)
T ss_pred hHHHHHHHHHhCCCcCHHHHHHcCCcCeecCHHHH
Confidence 22334445545678999999999999999876553
No 78
>PRK05995 enoyl-CoA hydratase; Provisional
Probab=98.81 E-value=1.2e-07 Score=81.06 Aligned_cols=147 Identities=18% Similarity=0.153 Sum_probs=97.0
Q ss_pred cEEEEccc-----cCcchHHHHHHHHHhhccCCCCCceEEEEe----CCCCChhH------------------HHHHHHH
Q 028125 32 RVIFIGQN-----IDEEFSNQILATMLYLDSVDDSKRVYMYIN----GPGGDVTP------------------TLAIYDT 84 (213)
Q Consensus 32 ~iI~i~G~-----I~~~~~~~l~~~l~~l~~~~~~~~I~l~IN----SpGG~v~~------------------~~~I~~~ 84 (213)
.+|+++-+ ++.++.+.+.+.+..++.+++.+.|+|.=. |.|+++.. ...++..
T Consensus 15 ~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (262)
T PRK05995 15 ATVTLNRPDVRNAFNETVIAELTAAFRALDADDSVRAVVLAGAGKAFCAGADLNWMKKMAGYSDDENRADARRLADMLRA 94 (262)
T ss_pred EEEEEcCcccccCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCCCccccCcCHHHHhhhcccCchhhhhHHHHHHHHHHH
Confidence 35666654 566677888888887766555554444311 23344421 0234566
Q ss_pred HHhcCCCeEEEEccccchHHHHHHhcCCCCcEeeccCCeEEEeCCCccCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 028125 85 MQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQ 164 (213)
Q Consensus 85 i~~~~~~v~t~~~G~aaSaa~~I~~ag~~~~r~~~p~s~i~iH~p~~~~~G~~~d~~~~~~~l~~~~~~~~~~~a~~tg~ 164 (213)
|..+++||++.+.|.|..+|.-++++||- |++.++++|.+-....+... +... ..+ .+. +
T Consensus 95 l~~~~kPvIaav~G~a~GgG~~lalacD~--ria~~~a~f~~pe~~~Gl~p---~~g~-----~~l--------~~~--v 154 (262)
T PRK05995 95 IYRCPKPVIARVHGDAYAGGMGLVAACDI--AVAADHAVFCLSEVRLGLIP---ATIS-----PYV--------IRA--M 154 (262)
T ss_pred HHcCCCCEEEEECCEEEhhHHHHHHhCCE--EEeeCCCEEeCcccccccCc---cchH-----HHH--------HHH--h
Confidence 77889999999999999999999999998 99999999976554443211 1100 001 111 2
Q ss_pred CHHHHHHHhcCCceeCHHHHHHcCCceEecCCcc
Q 028125 165 PFEKITKDLSRIKRFGSQEALEYGLIDRIIRPPR 198 (213)
Q Consensus 165 ~~~~i~~~~~~~~~~sa~EA~~~GLiD~I~~~~~ 198 (213)
......+++-.+..++++||+++||||+|...++
T Consensus 155 g~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~ 188 (262)
T PRK05995 155 GERAARRYFLTAERFDAAEALRLGLVHEVVPAEA 188 (262)
T ss_pred CHHHHHHHHHcCCccCHHHHHHcCCCCeecCHHH
Confidence 3344455555567799999999999999986554
No 79
>PRK06144 enoyl-CoA hydratase; Provisional
Probab=98.80 E-value=1.2e-07 Score=81.16 Aligned_cols=149 Identities=13% Similarity=0.149 Sum_probs=96.6
Q ss_pred cEEEEccc-----cCcchHHHHHHHHHhhccCCCCCceEEEEe-----CCCCChhH----------------HHHHHHHH
Q 028125 32 RVIFIGQN-----IDEEFSNQILATMLYLDSVDDSKRVYMYIN-----GPGGDVTP----------------TLAIYDTM 85 (213)
Q Consensus 32 ~iI~i~G~-----I~~~~~~~l~~~l~~l~~~~~~~~I~l~IN-----SpGG~v~~----------------~~~I~~~i 85 (213)
.+|.++-+ ++.++.+.+.+.+..++.+++.+.|+|.=+ |.|+++.. ...+++.|
T Consensus 19 ~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l 98 (262)
T PRK06144 19 ARITFNRPAARNAMTWAMYEGLAEICEAIAADPSIRAVVLRGAGDKAFVAGTDIAQFRAFSTAEDAVAYERRIDRVLGAL 98 (262)
T ss_pred EEEEecCCcccCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCceecCcCHHHHhhccchhHHHHHHHHHHHHHHHH
Confidence 34556544 456667888888887776655565555321 23454421 12344567
Q ss_pred HhcCCCeEEEEccccchHHHHHHhcCCCCcEeeccCCeEEEeCCC-ccCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 028125 86 QSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPA-GAARGQADDIRNEADELLRVRDYIFKELSRKTGQ 164 (213)
Q Consensus 86 ~~~~~~v~t~~~G~aaSaa~~I~~ag~~~~r~~~p~s~i~iH~p~-~~~~G~~~d~~~~~~~l~~~~~~~~~~~a~~tg~ 164 (213)
..+++||++.+.|.|..+|.-++++||. |++.+++.|.+-... .+.. .... ....+ .+..
T Consensus 99 ~~~~kPvIaav~G~a~GgG~~lala~D~--~ia~~~a~f~~pe~~~~G~~---p~~g----~~~~l--------~~~v-- 159 (262)
T PRK06144 99 EQLRVPTIAAIAGACVGGGAAIAAACDL--RIATPSARFGFPIARTLGNC---LSMS----NLARL--------VALL-- 159 (262)
T ss_pred HhCCCCEEEEECCeeeehHHHHHHhCCE--EEecCCCEeechhHHhccCC---CCcc----HHHHH--------HHHh--
Confidence 7889999999999999999999999998 999999998753321 2211 0000 01111 1112
Q ss_pred CHHHHHHHhcCCceeCHHHHHHcCCceEecCCccc
Q 028125 165 PFEKITKDLSRIKRFGSQEALEYGLIDRIIRPPRI 199 (213)
Q Consensus 165 ~~~~i~~~~~~~~~~sa~EA~~~GLiD~I~~~~~~ 199 (213)
......+++-.+..|+++||+++||||+|...+++
T Consensus 160 G~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l 194 (262)
T PRK06144 160 GAARVKDMLFTARLLEAEEALAAGLVNEVVEDAAL 194 (262)
T ss_pred CHHHHHHHHHcCCCcCHHHHHHcCCcCeecCHHHH
Confidence 23444555555788999999999999999987654
No 80
>PRK07468 enoyl-CoA hydratase; Provisional
Probab=98.80 E-value=9.9e-08 Score=81.68 Aligned_cols=148 Identities=14% Similarity=0.157 Sum_probs=98.1
Q ss_pred cEEEEccc-----cCcchHHHHHHHHHhhccCCCCCceEEEEe----CCCCChhHH------------------HHHHHH
Q 028125 32 RVIFIGQN-----IDEEFSNQILATMLYLDSVDDSKRVYMYIN----GPGGDVTPT------------------LAIYDT 84 (213)
Q Consensus 32 ~iI~i~G~-----I~~~~~~~l~~~l~~l~~~~~~~~I~l~IN----SpGG~v~~~------------------~~I~~~ 84 (213)
.+|+++.+ ++.++...+.+.+..++.++..+.|+|.=+ |-|+++..- ..+++.
T Consensus 16 ~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (262)
T PRK07468 16 ATLTLNRPEKHNALSARMIAELTTAARRLAADAAVRVVVLTGAGKSFCAGGDLGWMRAQMTADRATRIEEARRLAMMLKA 95 (262)
T ss_pred EEEEEcCcccccCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCCCcccCCcCHHHHHhhcccchhhHHHHHHHHHHHHHH
Confidence 35667654 556677778887877765554555555422 233554310 125677
Q ss_pred HHhcCCCeEEEEccccchHHHHHHhcCCCCcEeeccCCeEEEeCCCccCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 028125 85 MQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQ 164 (213)
Q Consensus 85 i~~~~~~v~t~~~G~aaSaa~~I~~ag~~~~r~~~p~s~i~iH~p~~~~~G~~~d~~~~~~~l~~~~~~~~~~~a~~tg~ 164 (213)
|+.+++||++.+.|.|..+|.-++++||. |++.++++|.+.....+..- +..-. .+ ..+ +
T Consensus 96 l~~~~kPvIaav~G~a~GgG~~lala~D~--ria~~~a~f~~pe~~~Gl~p---~~g~~--~~-----------~~~--v 155 (262)
T PRK07468 96 LNDLPKPLIGRIQGQAFGGGVGLISVCDV--AIAVSGARFGLTETRLGLIP---ATISP--YV-----------VAR--M 155 (262)
T ss_pred HHcCCCCEEEEECCEEEhHHHHHHHhCCE--EEEeCCCEEeCchhccCCCc---ccchh--hH-----------Hhh--c
Confidence 88899999999999999999999999998 99999998876544433210 00000 00 011 2
Q ss_pred CHHHHHHHhcCCceeCHHHHHHcCCceEecCCccc
Q 028125 165 PFEKITKDLSRIKRFGSQEALEYGLIDRIIRPPRI 199 (213)
Q Consensus 165 ~~~~i~~~~~~~~~~sa~EA~~~GLiD~I~~~~~~ 199 (213)
......+++-.+..++++||+++||||+|...+++
T Consensus 156 G~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l 190 (262)
T PRK07468 156 GEANARRVFMSARLFDAEEAVRLGLLSRVVPAERL 190 (262)
T ss_pred cHHHHHHHHHhCCccCHHHHHHcCCcceecCHHHH
Confidence 33444555555788999999999999999876553
No 81
>PRK06142 enoyl-CoA hydratase; Provisional
Probab=98.79 E-value=1.1e-07 Score=81.88 Aligned_cols=148 Identities=15% Similarity=0.166 Sum_probs=96.4
Q ss_pred cEEEEccc-----cCcchHHHHHHHHHhhccCCCCCceEEEEe----CCCCChhH-------------------------
Q 028125 32 RVIFIGQN-----IDEEFSNQILATMLYLDSVDDSKRVYMYIN----GPGGDVTP------------------------- 77 (213)
Q Consensus 32 ~iI~i~G~-----I~~~~~~~l~~~l~~l~~~~~~~~I~l~IN----SpGG~v~~------------------------- 77 (213)
.+|+++-+ ++.++...+.+.+..++.+++.+.|+|.=+ |-|+++..
T Consensus 17 ~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (272)
T PRK06142 17 AQVTLNRPGKGNAMNPAFWSELPEIFRWLDADPEVRAVVLSGSGKHFSYGIDLPAMAGVFGQLGKDGLARPRTDLRREIL 96 (272)
T ss_pred EEEEEcCCCccCCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCceecccCHHHHhhhcccccccccccchHHHHHHHH
Confidence 34666665 677777888888887766555555554321 22344321
Q ss_pred -HHHHHHHHHhcCCCeEEEEccccchHHHHHHhcCCCCcEeeccCCeEEEeCCCccCCCChHHHHHHHHHHHHHHHHHHH
Q 028125 78 -TLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFK 156 (213)
Q Consensus 78 -~~~I~~~i~~~~~~v~t~~~G~aaSaa~~I~~ag~~~~r~~~p~s~i~iH~p~~~~~G~~~d~~~~~~~l~~~~~~~~~ 156 (213)
...+++.|..+++||++.+.|.|..+|.-++++||. |++.++++|.+.....+.. + .... ...+.+
T Consensus 97 ~~~~~~~~i~~~~kpvIAav~G~a~GgG~~lalacD~--~ia~~~a~f~~pe~~~Gl~--p-~~g~----~~~l~~---- 163 (272)
T PRK06142 97 RLQAAINAVADCRKPVIAAVQGWCIGGGVDLISACDM--RYASADAKFSVREVDLGMV--A-DVGS----LQRLPR---- 163 (272)
T ss_pred HHHHHHHHHHhCCCCEEEEecCccccchHHHHHhCCE--EEecCCCeecchhhhhCCC--C-CchH----HHHHHH----
Confidence 123455678889999999999999999999999998 9999999887654443321 0 0000 011111
Q ss_pred HHHHHhCCCHHHHHHHhcCCceeCHHHHHHcCCceEecCC-cc
Q 028125 157 ELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRIIRP-PR 198 (213)
Q Consensus 157 ~~a~~tg~~~~~i~~~~~~~~~~sa~EA~~~GLiD~I~~~-~~ 198 (213)
. +......+++-.+..++++||+++||||+|..+ ++
T Consensus 164 ----~--~G~~~a~~l~l~g~~~~a~eA~~~GLv~~vv~~~~~ 200 (272)
T PRK06142 164 ----I--IGDGHLRELALTGRDIDAAEAEKIGLVNRVYDDADA 200 (272)
T ss_pred ----H--hCHHHHHHHHHhCCCcCHHHHHHcCCccEecCCHHH
Confidence 1 122334444444677999999999999999975 44
No 82
>PRK08290 enoyl-CoA hydratase; Provisional
Probab=98.79 E-value=8e-08 Score=83.50 Aligned_cols=146 Identities=13% Similarity=0.068 Sum_probs=95.8
Q ss_pred EEEEccc-----cCcchHHHHHHHHHhhccCCCCCceEEEEe----CCCCChhH--------------------------
Q 028125 33 VIFIGQN-----IDEEFSNQILATMLYLDSVDDSKRVYMYIN----GPGGDVTP-------------------------- 77 (213)
Q Consensus 33 iI~i~G~-----I~~~~~~~l~~~l~~l~~~~~~~~I~l~IN----SpGG~v~~-------------------------- 77 (213)
+|.|+.+ ++.++.+.+.+.+..++.+++.+.|+|.=+ |-|+++..
T Consensus 16 ~ItlnrP~~~Nal~~~~~~eL~~~l~~~~~d~~vrvvVltg~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (288)
T PRK08290 16 RITLNRPEARNAQNRQMLYELDAAFRRAEADDAVRVIVLAGAGKHFSAGHDLGSGTPGRDRDPGPDQHPTLWWDGATKPG 95 (288)
T ss_pred EEEecCccccCCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCccccCCCccccccccccccccccccccccccccccc
Confidence 4566554 566677788888887766555555555321 22344321
Q ss_pred -----------HHHHHHHHHhcCCCeEEEEccccchHHHHHHhcCCCCcEeeccCCeEEEeCCCccCCCChHHHHHHHHH
Q 028125 78 -----------TLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADE 146 (213)
Q Consensus 78 -----------~~~I~~~i~~~~~~v~t~~~G~aaSaa~~I~~ag~~~~r~~~p~s~i~iH~p~~~~~G~~~d~~~~~~~ 146 (213)
...++..|+.+++||++.+.|.|..+|.-++++||. |++.+++.|.+-....+..|. ..
T Consensus 96 ~~~~~~~~~~~~~~~~~~l~~~pkPvIAaVnG~a~GgG~~lalacD~--ria~e~a~f~~pe~~lGl~~~----~~---- 165 (288)
T PRK08290 96 VEQRYAREWEVYLGMCRRWRDLPKPTIAQVQGACIAGGLMLAWVCDL--IVASDDAFFSDPVVRMGIPGV----EY---- 165 (288)
T ss_pred hhhHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeeHHHHHHHHhCCE--EEeeCCCEecCcccccCcCcc----hH----
Confidence 012345677889999999999999999999999998 999999998754444443221 00
Q ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHhcCCceeCHHHHHHcCCceEecCCccc
Q 028125 147 LLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRIIRPPRI 199 (213)
Q Consensus 147 l~~~~~~~~~~~a~~tg~~~~~i~~~~~~~~~~sa~EA~~~GLiD~I~~~~~~ 199 (213)
+ .+.+ . +......+++-.++.++++||+++||||++...++.
T Consensus 166 ~-~l~~--------~--iG~~~A~~llltG~~i~A~eA~~~GLV~~vv~~~~l 207 (288)
T PRK08290 166 F-AHPW--------E--LGPRKAKELLFTGDRLTADEAHRLGMVNRVVPRDEL 207 (288)
T ss_pred H-HHHH--------H--hhHHHHHHHHHcCCCCCHHHHHHCCCccEeeCHHHH
Confidence 0 0101 1 123444555555678999999999999999876553
No 83
>PRK06127 enoyl-CoA hydratase; Provisional
Probab=98.79 E-value=1.8e-07 Score=80.36 Aligned_cols=149 Identities=15% Similarity=0.149 Sum_probs=99.2
Q ss_pred cEEEEccc-----cCcchHHHHHHHHHhhccCCCCCceEEEEeC-----CCCChhH----------H-------HHHHHH
Q 028125 32 RVIFIGQN-----IDEEFSNQILATMLYLDSVDDSKRVYMYING-----PGGDVTP----------T-------LAIYDT 84 (213)
Q Consensus 32 ~iI~i~G~-----I~~~~~~~l~~~l~~l~~~~~~~~I~l~INS-----pGG~v~~----------~-------~~I~~~ 84 (213)
.+|.|+-+ ++.++...+.+.+..++.+++.+.|+|.=+. .|+++.. . ..+++.
T Consensus 22 ~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (269)
T PRK06127 22 GRITFNNPARHNAMSLDMWEALPQALAAAEDDDAIRVVVLTGAGEKAFVSGADISQFEESRSDAEAVAAYEQAVEAAQAA 101 (269)
T ss_pred EEEEecCCCccCCCCHHHHHHHHHHHHHHHhCCCcEEEEEEeCCCCceecCcCHHHHhhcccchHHHHHHHHHHHHHHHH
Confidence 34666655 6667778888888887766555555543221 1344321 0 124466
Q ss_pred HHhcCCCeEEEEccccchHHHHHHhcCCCCcEeeccCCeEEEeCCCccCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 028125 85 MQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQ 164 (213)
Q Consensus 85 i~~~~~~v~t~~~G~aaSaa~~I~~ag~~~~r~~~p~s~i~iH~p~~~~~G~~~d~~~~~~~l~~~~~~~~~~~a~~tg~ 164 (213)
|..+++||++.+.|.|..+|.-++++||. |++.++++|.+.....+..-..-- ...+.+. +
T Consensus 102 i~~~~kPvIaav~G~a~GgG~~LalacD~--~ia~~~a~f~~pe~~~Gl~p~~g~-------~~~l~~~----------v 162 (269)
T PRK06127 102 LADYAKPTIACIRGYCIGGGMGIALACDI--RIAAEDSRFGIPAARLGLGYGYDG-------VKNLVDL----------V 162 (269)
T ss_pred HHhCCCCEEEEECCEEecHHHHHHHhCCE--EEeeCCCEeeCchhhhCCCCCccH-------HHHHHHH----------h
Confidence 77889999999999999999999999998 999999999876554432110000 0111111 1
Q ss_pred CHHHHHHHhcCCceeCHHHHHHcCCceEecCCccc
Q 028125 165 PFEKITKDLSRIKRFGSQEALEYGLIDRIIRPPRI 199 (213)
Q Consensus 165 ~~~~i~~~~~~~~~~sa~EA~~~GLiD~I~~~~~~ 199 (213)
......+++-.+..++++||+++||||+|...++.
T Consensus 163 G~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l 197 (269)
T PRK06127 163 GPSAAKDLFYTARRFDAAEALRIGLVHRVTAADDL 197 (269)
T ss_pred CHHHHHHHHHcCCCCCHHHHHHcCCCCEeeCHHHH
Confidence 23444555555778999999999999999976654
No 84
>PRK07657 enoyl-CoA hydratase; Provisional
Probab=98.79 E-value=1.6e-07 Score=80.35 Aligned_cols=147 Identities=16% Similarity=0.182 Sum_probs=97.1
Q ss_pred cEEEEccc-----cCcchHHHHHHHHHhhccCCCCCceEEEEeCCC-------CChhH---------------HHHHHHH
Q 028125 32 RVIFIGQN-----IDEEFSNQILATMLYLDSVDDSKRVYMYINGPG-------GDVTP---------------TLAIYDT 84 (213)
Q Consensus 32 ~iI~i~G~-----I~~~~~~~l~~~l~~l~~~~~~~~I~l~INSpG-------G~v~~---------------~~~I~~~ 84 (213)
.+|+|+-+ ++.++...+.+.+..++.+++.+.|+| .+.| +++.. ...+++.
T Consensus 15 ~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~v~~vVl--~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 92 (260)
T PRK07657 15 VKITLNRPRAANALSLALLEELQNILTQINEEANVRVVIL--TGAGEKAFCAGADLKERAGMNEEQVRHAVSLIRTTMEM 92 (260)
T ss_pred EEEEEeCCcccCCCCHHHHHHHHHHHHHHHhCCCeEEEEE--ecCCCCceEcCcChHhhhcCChhhHHHHHHHHHHHHHH
Confidence 34666654 666777888888887776655554444 4444 33321 1235567
Q ss_pred HHhcCCCeEEEEccccchHHHHHHhcCCCCcEeeccCCeEEEeCCCccCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 028125 85 MQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQ 164 (213)
Q Consensus 85 i~~~~~~v~t~~~G~aaSaa~~I~~ag~~~~r~~~p~s~i~iH~p~~~~~G~~~d~~~~~~~l~~~~~~~~~~~a~~tg~ 164 (213)
|..+++||++.+.|.|..+|.-++++||- |++.+++.|.+.....+..-..-- ...+.+. .
T Consensus 93 l~~~~kPvIaav~G~a~GgG~~lal~cD~--~ia~~~a~f~~pe~~~G~~p~~g~-------~~~l~~~--------v-- 153 (260)
T PRK07657 93 VEQLPQPVIAAINGIALGGGLELALACDF--RIAAESASLGLTETTLAIIPGAGG-------TQRLPRL--------I-- 153 (260)
T ss_pred HHhCCCCEEEEEcCEeechHHHHHHhCCE--EEeeCCCEEcCchhccCcCCCccH-------HHHHHHH--------h--
Confidence 78889999999999999999999999998 999999998765544432111000 0011111 1
Q ss_pred CHHHHHHHhcCCceeCHHHHHHcCCceEecCCccc
Q 028125 165 PFEKITKDLSRIKRFGSQEALEYGLIDRIIRPPRI 199 (213)
Q Consensus 165 ~~~~i~~~~~~~~~~sa~EA~~~GLiD~I~~~~~~ 199 (213)
......+++-.+..++++||+++||||+|...++.
T Consensus 154 G~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l 188 (260)
T PRK07657 154 GVGRAKELIYTGRRISAQEAKEIGLVEFVVPAHLL 188 (260)
T ss_pred CHHHHHHHHHhCCCCCHHHHHHcCCCCeecCHHHH
Confidence 12233444444567999999999999999887654
No 85
>PRK05862 enoyl-CoA hydratase; Provisional
Probab=98.78 E-value=1.9e-07 Score=79.67 Aligned_cols=148 Identities=13% Similarity=0.175 Sum_probs=96.3
Q ss_pred EEEEccc-----cCcchHHHHHHHHHhhccCCCCCceEEEEe----CCCCChhH-------------HHHHHHHHHhcCC
Q 028125 33 VIFIGQN-----IDEEFSNQILATMLYLDSVDDSKRVYMYIN----GPGGDVTP-------------TLAIYDTMQSLKS 90 (213)
Q Consensus 33 iI~i~G~-----I~~~~~~~l~~~l~~l~~~~~~~~I~l~IN----SpGG~v~~-------------~~~I~~~i~~~~~ 90 (213)
+|+++-+ ++.++...+.+.+..++.+++.+.|+|.=+ |-|+++.. ...++..|..+++
T Consensus 16 ~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~l~~~~k 95 (257)
T PRK05862 16 LITLNRPKALNALNDALMDELGAALAAFDADEGIGAIVITGSEKAFAAGADIKEMADLSFMDVYKGDYITNWEKVARIRK 95 (257)
T ss_pred EEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCeeEEEEECCCCceECCcChHhHhccchhHHHHHHHHHHHHHHHhCCC
Confidence 4666654 566677788888887776665565555411 12344321 1234567788899
Q ss_pred CeEEEEccccchHHHHHHhcCCCCcEeeccCCeEEEeCCCccCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHH
Q 028125 91 PVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKIT 170 (213)
Q Consensus 91 ~v~t~~~G~aaSaa~~I~~ag~~~~r~~~p~s~i~iH~p~~~~~G~~~d~~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~ 170 (213)
||++.+.|.|..+|.-++++||. |++.++++|.+-....+.. .+... ...+ .+.. ......
T Consensus 96 pvIaav~G~a~GgG~~lalacD~--~ia~~~a~f~~pe~~~Gl~---p~~g~----~~~l--------~~~v--G~~~a~ 156 (257)
T PRK05862 96 PVIAAVAGYALGGGCELAMMCDI--IIAADTAKFGQPEIKLGVL---PGMGG----SQRL--------TRAV--GKAKAM 156 (257)
T ss_pred CEEEEEccEEeHHHHHHHHHCCE--EEEeCCCEEeCchhccCcC---CCccH----HHHH--------HHHh--CHHHHH
Confidence 99999999999999999999998 9999999987644333221 00000 0111 1111 223334
Q ss_pred HHhcCCceeCHHHHHHcCCceEecCCccc
Q 028125 171 KDLSRIKRFGSQEALEYGLIDRIIRPPRI 199 (213)
Q Consensus 171 ~~~~~~~~~sa~EA~~~GLiD~I~~~~~~ 199 (213)
+++-.+..++++||+++||||+|...+++
T Consensus 157 ~l~l~g~~~~a~eA~~~Glv~~vv~~~~l 185 (257)
T PRK05862 157 DLCLTGRMMDAAEAERAGLVSRVVPADKL 185 (257)
T ss_pred HHHHhCCccCHHHHHHcCCCCEeeCHhHH
Confidence 44545678999999999999999876553
No 86
>PRK07260 enoyl-CoA hydratase; Provisional
Probab=98.78 E-value=1.3e-07 Score=80.59 Aligned_cols=143 Identities=15% Similarity=0.184 Sum_probs=95.7
Q ss_pred EEEEccc-----cCcchHHHHHHHHHhhccCCCCCceEEEEeCCC------CChhH-------------------HHHHH
Q 028125 33 VIFIGQN-----IDEEFSNQILATMLYLDSVDDSKRVYMYINGPG------GDVTP-------------------TLAIY 82 (213)
Q Consensus 33 iI~i~G~-----I~~~~~~~l~~~l~~l~~~~~~~~I~l~INSpG------G~v~~-------------------~~~I~ 82 (213)
+|+++.+ ++.++...+.+.+..++.+++.+.|+| .+.| +++.. ...++
T Consensus 14 ~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl--~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (255)
T PRK07260 14 TLTLNRPEVSNGFNIPMCQEILEALRLAEEDPSVRFLLI--NANGKVFSVGGDLVEMKRAVDEDDVQSLVKIAELVNEIS 91 (255)
T ss_pred EEEeCCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEE--ECCCCCcccccCHHHHHhhccccchhhHHHHHHHHHHHH
Confidence 4666654 566777888888887766555554444 4444 34321 12344
Q ss_pred HHHHhcCCCeEEEEccccchHHHHHHhcCCCCcEeeccCCeEEEeCCCccC---CCChHHHHHHHHHHHHHHHHHHHHHH
Q 028125 83 DTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAA---RGQADDIRNEADELLRVRDYIFKELS 159 (213)
Q Consensus 83 ~~i~~~~~~v~t~~~G~aaSaa~~I~~ag~~~~r~~~p~s~i~iH~p~~~~---~G~~~d~~~~~~~l~~~~~~~~~~~a 159 (213)
..|+.+++||++.+.|.|..+|.-++++||. |++.+++.|.+-....+. .|... .+.
T Consensus 92 ~~l~~~~kPvIaav~G~a~GgG~~lala~D~--ria~~~a~f~~pe~~~Gl~p~~g~~~----------~l~-------- 151 (255)
T PRK07260 92 FAIKQLPKPVIMCVDGAVAGAAANMAVAADF--CIASTKTKFIQAFVGVGLAPDAGGLF----------LLT-------- 151 (255)
T ss_pred HHHHcCCCCEEEEecCeeehhhHHHHHhCCE--EEEeCCCEEechHhhcCCCCCCchhh----------hhH--------
Confidence 5677889999999999999999999999998 999999988753222221 11110 111
Q ss_pred HHhCCCHHHHHHHhcCCceeCHHHHHHcCCceEecCCccc
Q 028125 160 RKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRIIRPPRI 199 (213)
Q Consensus 160 ~~tg~~~~~i~~~~~~~~~~sa~EA~~~GLiD~I~~~~~~ 199 (213)
+. .......+++-.+..+|++||+++||||+|.+.+++
T Consensus 152 ~~--vg~~~a~~l~l~g~~~sa~eA~~~Glv~~vv~~~~l 189 (255)
T PRK07260 152 RA--IGLNRATHLAMTGEALTAEKALEYGFVYRVAESEKL 189 (255)
T ss_pred Hh--hCHHHHHHHHHhCCccCHHHHHHcCCcceecCHhHH
Confidence 11 123344555555788999999999999999877654
No 87
>PRK08140 enoyl-CoA hydratase; Provisional
Probab=98.77 E-value=2.5e-07 Score=79.11 Aligned_cols=148 Identities=11% Similarity=0.097 Sum_probs=96.8
Q ss_pred cEEEEccc-----cCcchHHHHHHHHHhhccCCCCCceEEEEe----CCCCChhHH-------------------HHHHH
Q 028125 32 RVIFIGQN-----IDEEFSNQILATMLYLDSVDDSKRVYMYIN----GPGGDVTPT-------------------LAIYD 83 (213)
Q Consensus 32 ~iI~i~G~-----I~~~~~~~l~~~l~~l~~~~~~~~I~l~IN----SpGG~v~~~-------------------~~I~~ 83 (213)
.+|+|+-+ ++.++.+.+.+.+..++ +++.+.|+|.=+ |.|+++..- ..++.
T Consensus 15 ~~itlnrp~~~Nal~~~~~~~l~~~~~~~~-d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (262)
T PRK08140 15 ATLTLNRPDKLNSFTREMHRELREALDQVE-DDGARALLLTGAGRGFCAGQDLADRDVTPGGAMPDLGESIETFYNPLVR 93 (262)
T ss_pred EEEEecCCcccCCCCHHHHHHHHHHHHHhc-CCCceEEEEECCCCCcccCcChHHHhccccccchhhHHHHHHHHHHHHH
Confidence 34666654 56677788888888887 665665555311 334444210 12455
Q ss_pred HHHhcCCCeEEEEccccchHHHHHHhcCCCCcEeeccCCeEEEeCCCccCCCChHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 028125 84 TMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTG 163 (213)
Q Consensus 84 ~i~~~~~~v~t~~~G~aaSaa~~I~~ag~~~~r~~~p~s~i~iH~p~~~~~G~~~d~~~~~~~l~~~~~~~~~~~a~~tg 163 (213)
.|..+++||++.+.|.|..+|.-++++||- |++.+++.|.+-....+.. + .... ...+.+.
T Consensus 94 ~l~~~~kPvIaav~G~a~GgG~~lalacD~--ria~~~a~f~~pe~~~G~~--p-~~g~----~~~l~~~---------- 154 (262)
T PRK08140 94 RLRALPLPVIAAVNGVAAGAGANLALACDI--VLAARSASFIQAFVKIGLV--P-DSGG----TWFLPRL---------- 154 (262)
T ss_pred HHHhCCCCEEEEECCeeehhHHHHHHhCCE--EEecCCCEEeccccccCCC--C-CccH----HHHHHHH----------
Confidence 777889999999999999999999999998 9999999987533332211 0 0000 0011111
Q ss_pred CCHHHHHHHhcCCceeCHHHHHHcCCceEecCCccc
Q 028125 164 QPFEKITKDLSRIKRFGSQEALEYGLIDRIIRPPRI 199 (213)
Q Consensus 164 ~~~~~i~~~~~~~~~~sa~EA~~~GLiD~I~~~~~~ 199 (213)
+......+++-.++.|+++||+++||||+|...++.
T Consensus 155 vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l 190 (262)
T PRK08140 155 VGMARALGLALLGEKLSAEQAEQWGLIWRVVDDAAL 190 (262)
T ss_pred hCHHHHHHHHHcCCCcCHHHHHHcCCccEeeChHHH
Confidence 122333445545678999999999999999987653
No 88
>PRK08259 enoyl-CoA hydratase; Provisional
Probab=98.75 E-value=2.6e-07 Score=78.85 Aligned_cols=150 Identities=14% Similarity=0.107 Sum_probs=96.1
Q ss_pred cEEEEccc-----cCcchHHHHHHHHHhhccCCCCCceEEEEe----CCCCChhHHH-----H--------HHHHHHhcC
Q 028125 32 RVIFIGQN-----IDEEFSNQILATMLYLDSVDDSKRVYMYIN----GPGGDVTPTL-----A--------IYDTMQSLK 89 (213)
Q Consensus 32 ~iI~i~G~-----I~~~~~~~l~~~l~~l~~~~~~~~I~l~IN----SpGG~v~~~~-----~--------I~~~i~~~~ 89 (213)
.+|+++-+ ++.++...+.+.+..++.+++.+.|+|.=+ |.|+++.... . ....+..++
T Consensus 14 ~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (254)
T PRK08259 14 TTVILNRPEVRNAVDGPTAAALADAFRAFDADDAASVAVLWGAGGTFCAGADLKAVGTGRGNRLHPSGDGPMGPSRMRLS 93 (254)
T ss_pred EEEEecCCccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCccCCcChHHHhcccchhhhhhhcchhhhHHhcCC
Confidence 45666654 566677888888888776665665555321 3455543210 0 111223578
Q ss_pred CCeEEEEccccchHHHHHHhcCCCCcEeeccCCeEEEeCCCccCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHH
Q 028125 90 SPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKI 169 (213)
Q Consensus 90 ~~v~t~~~G~aaSaa~~I~~ag~~~~r~~~p~s~i~iH~p~~~~~G~~~d~~~~~~~l~~~~~~~~~~~a~~tg~~~~~i 169 (213)
+||++.+.|.|..+|.-++++||. |++.+++.|.+-....+.. .... ....+ .+.. .....
T Consensus 94 kPvIaav~G~a~GgG~~lalacD~--~ia~~~a~f~~pe~~~Gl~---p~~g----~~~~l--------~~~i--G~~~a 154 (254)
T PRK08259 94 KPVIAAVSGYAVAGGLELALWCDL--RVAEEDAVFGVFCRRWGVP---LIDG----GTVRL--------PRLI--GHSRA 154 (254)
T ss_pred CCEEEEECCEEEhHHHHHHHhCCE--EEecCCCEecCcccccCCC---CCcc----HHHHH--------HHHh--CHHHH
Confidence 999999999999999999999998 9999999886543332211 0000 00111 1111 23444
Q ss_pred HHHhcCCceeCHHHHHHcCCceEecCCcccc
Q 028125 170 TKDLSRIKRFGSQEALEYGLIDRIIRPPRIK 200 (213)
Q Consensus 170 ~~~~~~~~~~sa~EA~~~GLiD~I~~~~~~~ 200 (213)
.+++-.+..|+++||+++||||+|...++..
T Consensus 155 ~~lll~g~~~~a~eA~~~Glv~~vv~~~~l~ 185 (254)
T PRK08259 155 MDLILTGRPVDADEALAIGLANRVVPKGQAR 185 (254)
T ss_pred HHHHHcCCccCHHHHHHcCCCCEeeChhHHH
Confidence 5555556789999999999999999876643
No 89
>PRK06072 enoyl-CoA hydratase; Provisional
Probab=98.75 E-value=3e-07 Score=78.17 Aligned_cols=142 Identities=12% Similarity=0.067 Sum_probs=91.8
Q ss_pred cEEEEccc-----cCcchHHHHHHHHHhhccCCCCCceEEEEe----CCCCChhHH------------HHHHHHHHhcCC
Q 028125 32 RVIFIGQN-----IDEEFSNQILATMLYLDSVDDSKRVYMYIN----GPGGDVTPT------------LAIYDTMQSLKS 90 (213)
Q Consensus 32 ~iI~i~G~-----I~~~~~~~l~~~l~~l~~~~~~~~I~l~IN----SpGG~v~~~------------~~I~~~i~~~~~ 90 (213)
.+|+|+-+ ++.++.+.+.+.+..++.+++.+.|+|.=. |.|+++..- ..++..|..+++
T Consensus 11 ~~itlnrp~~~Nal~~~~~~~l~~a~~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~~k 90 (248)
T PRK06072 11 AIVTMSRPDKLNALNLEMRNEFISKLKQINADPKIRVVIVTGEGRAFCVGADLSEFAPDFAIDLRETFYPIIREIRFSDK 90 (248)
T ss_pred EEEEECCcccccCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCCcccCcCHHHHhhhhHHHHHHHHHHHHHHHHhCCC
Confidence 45677654 666777888888888776655555554311 345555321 234556778889
Q ss_pred CeEEEEccccchHHHHHHhcCCCCcEeeccCCeEEEeCCCccCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHH
Q 028125 91 PVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKIT 170 (213)
Q Consensus 91 ~v~t~~~G~aaSaa~~I~~ag~~~~r~~~p~s~i~iH~p~~~~~G~~~d~~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~ 170 (213)
||++.+.|.|..+|.-++++||- |++.+++.|.+.....+..- +..- ...+.+ ..| . ...
T Consensus 91 PvIaav~G~a~GgG~~lal~cD~--~ia~~~a~f~~~~~~~Gl~p---~~g~----~~~l~~--------~~g--~-~a~ 150 (248)
T PRK06072 91 IYISAINGVTAGACIGIALSTDF--KFASRDVKFVTAFQRLGLAS---DTGV----AYFLLK--------LTG--Q-RFY 150 (248)
T ss_pred CEEEEECCeeehHHHHHHHhCCE--EEEcCCCEEecchhhcCcCC---CchH----HHHHHH--------Hhh--H-HHH
Confidence 99999999999999999999998 99999999876554433211 1000 001111 112 1 222
Q ss_pred HHhcCCceeCHHHHHHcCCceEe
Q 028125 171 KDLSRIKRFGSQEALEYGLIDRI 193 (213)
Q Consensus 171 ~~~~~~~~~sa~EA~~~GLiD~I 193 (213)
+++-.+..|+++||+++||||.+
T Consensus 151 ~lll~g~~~~a~eA~~~Glv~~~ 173 (248)
T PRK06072 151 EILVLGGEFTAEEAERWGLLKIS 173 (248)
T ss_pred HHHHhCCccCHHHHHHCCCcccc
Confidence 33333566899999999999964
No 90
>PRK06213 enoyl-CoA hydratase; Provisional
Probab=98.75 E-value=2.9e-07 Score=77.23 Aligned_cols=145 Identities=19% Similarity=0.269 Sum_probs=92.2
Q ss_pred cEEEEccc----cCcchHHHHHHHHHhhccCCCCCceEEEEeCCC------CChhH--------------HHHHHHHHHh
Q 028125 32 RVIFIGQN----IDEEFSNQILATMLYLDSVDDSKRVYMYINGPG------GDVTP--------------TLAIYDTMQS 87 (213)
Q Consensus 32 ~iI~i~G~----I~~~~~~~l~~~l~~l~~~~~~~~I~l~INSpG------G~v~~--------------~~~I~~~i~~ 87 (213)
.+|.|+.+ ++.++.+.+.+.+..++ ++.+.| .|.+.| +++.. ...++..|..
T Consensus 14 ~~itln~~~~Nal~~~~~~~l~~~l~~~~--~~~~vv--vl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~l~~~l~~ 89 (229)
T PRK06213 14 ATITLDDGKVNALSPAMIDALNAALDQAE--DDRAVV--VITGQPGIFSGGFDLKVMTSGAQAAIALLTAGSTLARRLLS 89 (229)
T ss_pred EEEEeCCCCCCCCCHHHHHHHHHHHHHhh--ccCcEE--EEeCCCCceEcCcCHHHHhcchHhHHHHHHHHHHHHHHHHc
Confidence 34666654 56666777888877665 223333 334444 33321 1235566777
Q ss_pred cCCCeEEEEccccchHHHHHHhcCCCCcEeeccC-CeEEEeCCCccCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCCCH
Q 028125 88 LKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPL-SRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPF 166 (213)
Q Consensus 88 ~~~~v~t~~~G~aaSaa~~I~~ag~~~~r~~~p~-s~i~iH~p~~~~~G~~~d~~~~~~~l~~~~~~~~~~~a~~tg~~~ 166 (213)
+++|+++.+.|.|..+|.-++++||. |++.++ +.|.+-....+.. +... ....+ .++. ..
T Consensus 90 ~~kPvIAav~G~a~GgG~~lal~~D~--rva~~~~a~f~~pe~~~Gl~--~~~~-----~~~~l--------~~~~--g~ 150 (229)
T PRK06213 90 HPKPVIVACTGHAIAKGAFLLLSADY--RIGVHGPFKIGLNEVAIGMT--MPHA-----AIELA--------RDRL--TP 150 (229)
T ss_pred CCCCEEEEEcCeeeHHHHHHHHhCCe--eeEecCCcEEECchhhhCCc--CChH-----HHHHH--------HHHc--CH
Confidence 89999999999999999999999998 999999 8887644333211 1100 00011 1111 22
Q ss_pred HHHHHHhcCCceeCHHHHHHcCCceEecCCccc
Q 028125 167 EKITKDLSRIKRFGSQEALEYGLIDRIIRPPRI 199 (213)
Q Consensus 167 ~~i~~~~~~~~~~sa~EA~~~GLiD~I~~~~~~ 199 (213)
....+++-.+..++++||+++||||+|...+++
T Consensus 151 ~~a~~lll~g~~~~a~eA~~~Glv~~vv~~~~l 183 (229)
T PRK06213 151 SAFQRAVINAEMFDPEEAVAAGFLDEVVPPEQL 183 (229)
T ss_pred HHHHHHHHcCcccCHHHHHHCCCceeccChHHH
Confidence 333344445678999999999999999876654
No 91
>PRK07799 enoyl-CoA hydratase; Provisional
Probab=98.75 E-value=2.8e-07 Score=78.86 Aligned_cols=149 Identities=15% Similarity=0.140 Sum_probs=97.4
Q ss_pred cEEEEccc-----cCcchHHHHHHHHHhhccCCCCCceEEEEe----CCCCChhHHH----------------HH--HHH
Q 028125 32 RVIFIGQN-----IDEEFSNQILATMLYLDSVDDSKRVYMYIN----GPGGDVTPTL----------------AI--YDT 84 (213)
Q Consensus 32 ~iI~i~G~-----I~~~~~~~l~~~l~~l~~~~~~~~I~l~IN----SpGG~v~~~~----------------~I--~~~ 84 (213)
.+|+++-+ ++.++.+.+.+.+..++.+++.+.|+|.=+ |.|+++.... .+ ...
T Consensus 16 ~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (263)
T PRK07799 16 LIVTMNRPEARNALSTEMLRIMVDAWDRVDNDPDIRSCILTGAGGAFCAGMDLKAATKKPPGDSFKDGSYDPSRIDALLK 95 (263)
T ss_pred EEEEECCCcccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCccccccCHHHHhhccccchhhhhhhhhhHHHHHHH
Confidence 45677665 666778888888888877666665555321 3345443210 01 112
Q ss_pred HHhcCCCeEEEEccccchHHHHHHhcCCCCcEeeccCCeEEEeCCCccCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 028125 85 MQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQ 164 (213)
Q Consensus 85 i~~~~~~v~t~~~G~aaSaa~~I~~ag~~~~r~~~p~s~i~iH~p~~~~~G~~~d~~~~~~~l~~~~~~~~~~~a~~tg~ 164 (213)
++.+++||++.+.|.|..+|.-++++||- |++.+++.|.+.....+..- +... ...+.+ . +
T Consensus 96 ~~~~~kpvIaav~G~a~GgG~~lalacD~--ria~~~a~f~~pe~~~Gl~p---~~g~----~~~l~r--------~--v 156 (263)
T PRK07799 96 GRRLTKPLIAAVEGPAIAGGTEILQGTDI--RVAGESAKFGISEAKWSLFP---MGGS----AVRLVR--------Q--I 156 (263)
T ss_pred HhcCCCCEEEEECCeEeccHHHHHHhCCE--EEecCCCEecCcccccCcCC---CccH----HHHHHH--------H--h
Confidence 35678999999999999999999999998 99999999876544433210 0000 011111 1 2
Q ss_pred CHHHHHHHhcCCceeCHHHHHHcCCceEecCCccc
Q 028125 165 PFEKITKDLSRIKRFGSQEALEYGLIDRIIRPPRI 199 (213)
Q Consensus 165 ~~~~i~~~~~~~~~~sa~EA~~~GLiD~I~~~~~~ 199 (213)
......+++-.+..|+++||+++||||+|...++.
T Consensus 157 G~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l 191 (263)
T PRK07799 157 PYTVACDLLLTGRHITAAEAKEIGLIGHVVPDGQA 191 (263)
T ss_pred CHHHHHHHHHcCCCCCHHHHHHcCCccEecCcchH
Confidence 33444555555678999999999999999987654
No 92
>PRK08321 naphthoate synthase; Validated
Probab=98.75 E-value=3.5e-07 Score=80.02 Aligned_cols=147 Identities=12% Similarity=0.074 Sum_probs=99.8
Q ss_pred EEEEccc-----cCcchHHHHHHHHHhhccCCCCCceEEE-----------EeCCCCChhHH------------------
Q 028125 33 VIFIGQN-----IDEEFSNQILATMLYLDSVDDSKRVYMY-----------INGPGGDVTPT------------------ 78 (213)
Q Consensus 33 iI~i~G~-----I~~~~~~~l~~~l~~l~~~~~~~~I~l~-----------INSpGG~v~~~------------------ 78 (213)
+|+|+-+ ++.++...+.+.+..++.+++.+.|+|. .=|.|+++...
T Consensus 37 ~itlnrP~~~Nal~~~~~~~l~~al~~~~~d~~vrvvVltg~g~~~~~~~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~ 116 (302)
T PRK08321 37 RIAFDRPEVRNAFRPHTVDELYRALDHARMSPDVGCVLLTGNGPSPKDGGWAFCSGGDQRIRGRDGYQYAEGDEADTVDP 116 (302)
T ss_pred EEEeCCcccccCCCHHHHHHHHHHHHHHhhCCCcEEEEEeCCCCCCCCCCCeeecCcChhhhccccccccccccccchhh
Confidence 4666655 6667778888888888776666666664 23667765320
Q ss_pred -----H---HHHHHHHhcCCCeEEEEccccchHHHHHHhcCCCCcEeec-cCCeEEEeCCCccCC-CChHHHHHHHHHHH
Q 028125 79 -----L---AIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAM-PLSRIALDSPAGAAR-GQADDIRNEADELL 148 (213)
Q Consensus 79 -----~---~I~~~i~~~~~~v~t~~~G~aaSaa~~I~~ag~~~~r~~~-p~s~i~iH~p~~~~~-G~~~d~~~~~~~l~ 148 (213)
. .+.+.|..+++||++.+.|.|..+|.-++++||. |++. ++++|.+-....+.. +-.. ..
T Consensus 117 ~~~~~~~~~~~~~~l~~~pkP~IAaV~G~a~GgG~~lalacD~--ria~~~~a~f~~pe~~~Gl~p~~~~--------~~ 186 (302)
T PRK08321 117 ARAGRLHILEVQRLIRFMPKVVIAVVPGWAAGGGHSLHVVCDL--TLASREHARFKQTDADVGSFDGGYG--------SA 186 (302)
T ss_pred hHHHHHHHHHHHHHHHcCCCCEEEEEcCeeehHHHHHHHhCCE--EEEecCCCEEECCccccccCCCchH--------HH
Confidence 0 2445677889999999999999999999999998 9999 588887544333211 1000 00
Q ss_pred HHHHHHHHHHHHHhCCCHHHHHHHhcCCceeCHHHHHHcCCceEecCCccc
Q 028125 149 RVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRIIRPPRI 199 (213)
Q Consensus 149 ~~~~~~~~~~a~~tg~~~~~i~~~~~~~~~~sa~EA~~~GLiD~I~~~~~~ 199 (213)
.+ .+.. ......+++-.+..++++||+++||||+|....+.
T Consensus 187 ~L--------~r~v--G~~~A~~l~ltG~~~~A~eA~~~GLv~~vv~~~~l 227 (302)
T PRK08321 187 YL--------ARQV--GQKFAREIFFLGRTYSAEEAHDMGAVNAVVPHAEL 227 (302)
T ss_pred HH--------HHHh--CHHHHHHHHHcCCccCHHHHHHCCCceEeeCHHHH
Confidence 11 1112 23334455555678999999999999999986653
No 93
>PRK08252 enoyl-CoA hydratase; Provisional
Probab=98.74 E-value=3.2e-07 Score=78.19 Aligned_cols=148 Identities=17% Similarity=0.152 Sum_probs=95.3
Q ss_pred EEEEccc-----cCcchHHHHHHHHHhhccCCCCCceEEE----EeCCCCChhHH---------H-HHHHHH-HhcCCCe
Q 028125 33 VIFIGQN-----IDEEFSNQILATMLYLDSVDDSKRVYMY----INGPGGDVTPT---------L-AIYDTM-QSLKSPV 92 (213)
Q Consensus 33 iI~i~G~-----I~~~~~~~l~~~l~~l~~~~~~~~I~l~----INSpGG~v~~~---------~-~I~~~i-~~~~~~v 92 (213)
+|+++-+ ++.++.+.+.+.+..++.+++.+.|+|. .=|.|+++... . .+...+ ..+++||
T Consensus 15 ~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~kPv 94 (254)
T PRK08252 15 IITINRPEARNAVNAAVAQGLAAALDELDADPDLSVGILTGAGGTFCAGMDLKAFARGERPSIPGRGFGGLTERPPRKPL 94 (254)
T ss_pred EEEECCCcccCCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCceEcCcCHHHHhcccchhhhHHHHHHHHHhcCCCCE
Confidence 4666654 5667778888888888766656655552 11344554321 0 111111 3577999
Q ss_pred EEEEccccchHHHHHHhcCCCCcEeeccCCeEEEeCCCccCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHH
Q 028125 93 GTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKD 172 (213)
Q Consensus 93 ~t~~~G~aaSaa~~I~~ag~~~~r~~~p~s~i~iH~p~~~~~G~~~d~~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~ 172 (213)
++.+.|.|..+|.-++++||- |++.+++.|.+-....+..- +.. ....+ .+. .......++
T Consensus 95 Iaav~G~a~GgG~~lalacD~--~ia~~~a~f~~pe~~~Gl~p---~~g----~~~~l--------~~~--vg~~~a~~l 155 (254)
T PRK08252 95 IAAVEGYALAGGFELALACDL--IVAARDAKFGLPEVKRGLVA---AGG----GLLRL--------PRR--IPYHIAMEL 155 (254)
T ss_pred EEEECCEEehHHHHHHHhCCE--EEEeCCCEEeCchhhcCCCC---Cch----HHHHH--------HHH--cCHHHHHHH
Confidence 999999999999999999998 99999999875443333210 100 01111 111 234445555
Q ss_pred hcCCceeCHHHHHHcCCceEecCCccc
Q 028125 173 LSRIKRFGSQEALEYGLIDRIIRPPRI 199 (213)
Q Consensus 173 ~~~~~~~sa~EA~~~GLiD~I~~~~~~ 199 (213)
+-.+..++++||+++||||+|...++.
T Consensus 156 ~l~g~~~~a~eA~~~Glv~~vv~~~~l 182 (254)
T PRK08252 156 ALTGDMLTAERAHELGLVNRLTEPGQA 182 (254)
T ss_pred HHcCCccCHHHHHHcCCcceecCcchH
Confidence 555678999999999999999887654
No 94
>PRK06563 enoyl-CoA hydratase; Provisional
Probab=98.74 E-value=2.7e-07 Score=78.67 Aligned_cols=146 Identities=16% Similarity=0.179 Sum_probs=94.1
Q ss_pred cEEEEccc-----cCcchHHHHHHHHHhhccCCCCCceEEEEeCCC------CChhH---------------HHH-HHHH
Q 028125 32 RVIFIGQN-----IDEEFSNQILATMLYLDSVDDSKRVYMYINGPG------GDVTP---------------TLA-IYDT 84 (213)
Q Consensus 32 ~iI~i~G~-----I~~~~~~~l~~~l~~l~~~~~~~~I~l~INSpG------G~v~~---------------~~~-I~~~ 84 (213)
.+|+|+-+ ++.++.+.+.+.+..++.+++.+.|+| .+.| +++.. ... +...
T Consensus 10 ~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vrvvvl--~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (255)
T PRK06563 10 LLIGLDRPAKRNAFDSAMLDDLALALGEYEADDELRVAVL--FAHGEHFTAGLDLADVAPKLAAGGFPFPEGGIDPWGTV 87 (255)
T ss_pred EEEEECCcccccCCCHHHHHHHHHHHHHHhhCCCcEEEEE--ECCCCCCcCCcCHHHHhhccccchhhhhhhhhHHHHHH
Confidence 34666654 566677788888877766554444333 3333 44321 011 1234
Q ss_pred HHhcCCCeEEEEccccchHHHHHHhcCCCCcEeeccCCeEEEeCCCccCC-CChHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 028125 85 MQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAAR-GQADDIRNEADELLRVRDYIFKELSRKTG 163 (213)
Q Consensus 85 i~~~~~~v~t~~~G~aaSaa~~I~~ag~~~~r~~~p~s~i~iH~p~~~~~-G~~~d~~~~~~~l~~~~~~~~~~~a~~tg 163 (213)
++.+++||++.+.|.|..+|..++++||. |++.+++.|.+.....+.. +-.. ...+.+ ..
T Consensus 88 l~~~~kPvIAav~G~a~GgG~~lal~cD~--ria~~~a~f~~pe~~~Gl~p~~g~--------~~~l~~--------~v- 148 (255)
T PRK06563 88 GRRLSKPLVVAVQGYCLTLGIELMLAADI--VVAADNTRFAQLEVQRGILPFGGA--------TLRFPQ--------AA- 148 (255)
T ss_pred HhcCCCCEEEEEcCeeecHHHHHHHhCCE--EEecCCCEEeChhhhcCCCCCccH--------HHHHHH--------Hh-
Confidence 67788999999999999999999999998 9999999987655443321 0000 011111 11
Q ss_pred CCHHHHHHHhcCCceeCHHHHHHcCCceEecCCccc
Q 028125 164 QPFEKITKDLSRIKRFGSQEALEYGLIDRIIRPPRI 199 (213)
Q Consensus 164 ~~~~~i~~~~~~~~~~sa~EA~~~GLiD~I~~~~~~ 199 (213)
......+++-.+..|+++||+++||||+|...++.
T Consensus 149 -G~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l 183 (255)
T PRK06563 149 -GWGNAMRYLLTGDEFDAQEALRLGLVQEVVPPGEQ 183 (255)
T ss_pred -hHHHHHHHHHcCCCcCHHHHHHcCCCcEeeCHHHH
Confidence 22333445445678999999999999999877653
No 95
>TIGR03200 dearomat_oah 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase. Members of this protein family are 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase, a ring-hydrolyzing enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=98.74 E-value=3e-07 Score=81.87 Aligned_cols=146 Identities=13% Similarity=0.116 Sum_probs=97.5
Q ss_pred EEEEccc-----cCcchHHHHHHHHHhhccCCCCCceEEEEe-----CCCCChhH------------------HHHHHHH
Q 028125 33 VIFIGQN-----IDEEFSNQILATMLYLDSVDDSKRVYMYIN-----GPGGDVTP------------------TLAIYDT 84 (213)
Q Consensus 33 iI~i~G~-----I~~~~~~~l~~~l~~l~~~~~~~~I~l~IN-----SpGG~v~~------------------~~~I~~~ 84 (213)
+|.|+-+ ++.++...+.+.+..++.+++.+.|+|.=+ |-|+++.+ ...+++.
T Consensus 40 ~ItLNRP~k~NAls~~ml~eL~~al~~~~~D~dVrvVVLTG~G~kaFCAG~DLke~~~~~~~~~~~~~~~~~~~~~l~~~ 119 (360)
T TIGR03200 40 WIILDNPKQYNSYTTDMVKAIILAFRRASSDRDVVAVVFTAVGDKAFCTGGNTKEYAEYYAGNPQEYRQYMRLFNDMVSA 119 (360)
T ss_pred EEEECCCCccCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCCcccCCcCHHHHhhhcccChhHHHHHHHHHHHHHHH
Confidence 4667765 666777888888887776555555554221 22344321 1245567
Q ss_pred HHhcCCCeEEEEccccchHHHHHHhcCCCCcEeeccCCeEEEeCCCccCC--CChHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028125 85 MQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAAR--GQADDIRNEADELLRVRDYIFKELSRKT 162 (213)
Q Consensus 85 i~~~~~~v~t~~~G~aaSaa~~I~~ag~~~~r~~~p~s~i~iH~p~~~~~--G~~~d~~~~~~~l~~~~~~~~~~~a~~t 162 (213)
|..+++||++.+.|.|..+|.-|+++||. |++.+++.|.+.....+.. +-.. ..+.+. .
T Consensus 120 i~~~pKPVIAAVnG~AiGGGleLALaCDl--rIAse~A~Fg~PE~rlGl~P~~Ggt---------~rLprl--------v 180 (360)
T TIGR03200 120 ILGCDKPVICRVNGMRIGGGQEIGMAADF--TIAQDLANFGQAGPKHGSAPIGGAT---------DFLPLM--------I 180 (360)
T ss_pred HHhCCCCEEEEECCEeeeHHHHHHHhCCE--EEEcCCCEEeCchhccCCCCCccHH---------HHHHHh--------h
Confidence 88889999999999999999999999998 9999999998755443321 1111 111111 1
Q ss_pred CCCHHHHHHHhcCCceeCHHHHHHcCCceEecCCccc
Q 028125 163 GQPFEKITKDLSRIKRFGSQEALEYGLIDRIIRPPRI 199 (213)
Q Consensus 163 g~~~~~i~~~~~~~~~~sa~EA~~~GLiD~I~~~~~~ 199 (213)
.......++-.+..|+|+||+++||||+|....++
T Consensus 181 --G~~rA~~llltGe~~sA~EA~~~GLVd~VVp~~~~ 215 (360)
T TIGR03200 181 --GCEQAMVSGTLCEPWSAHKAKRLGIIMDVVPALKV 215 (360)
T ss_pred --CHHHHHHHHHhCCcCcHHHHHHcCChheecCchhc
Confidence 12233333334568999999999999999987775
No 96
>PRK05674 gamma-carboxygeranoyl-CoA hydratase; Validated
Probab=98.73 E-value=2.5e-07 Score=79.44 Aligned_cols=146 Identities=12% Similarity=0.114 Sum_probs=95.3
Q ss_pred EEEEccc-----cCcchHHHHHHHHHhhccCCCCCceEEEEe----CCCCChhH------------------HHHHHHHH
Q 028125 33 VIFIGQN-----IDEEFSNQILATMLYLDSVDDSKRVYMYIN----GPGGDVTP------------------TLAIYDTM 85 (213)
Q Consensus 33 iI~i~G~-----I~~~~~~~l~~~l~~l~~~~~~~~I~l~IN----SpGG~v~~------------------~~~I~~~i 85 (213)
+|+++-+ ++.++...+.+.+..++.+++.+.|+|.=+ |.|+++.. ...+...|
T Consensus 18 ~itlnrp~~~Nal~~~~~~el~~al~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l 97 (265)
T PRK05674 18 TLWLSRADKNNAFNAQMIRELILALDQVQSDASLRFLLLRGRGRHFSAGADLAWMQQSADLDYNTNLDDARELAELMYNL 97 (265)
T ss_pred EEEecCcccccCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCCcccCcCHHHHhhcccccchhhhHHHHHHHHHHHHH
Confidence 3555543 566667778888887776665565555221 33444431 02345567
Q ss_pred HhcCCCeEEEEccccchHHHHHHhcCCCCcEeeccCCeEEEeCCCccCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 028125 86 QSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQP 165 (213)
Q Consensus 86 ~~~~~~v~t~~~G~aaSaa~~I~~ag~~~~r~~~p~s~i~iH~p~~~~~G~~~d~~~~~~~l~~~~~~~~~~~a~~tg~~ 165 (213)
+.+++||++.+.|.|..+|.-++++||- |++.++++|.+-....+.. + +... ..+ .+.. .
T Consensus 98 ~~~~kPvIaaV~G~a~GgG~~lal~~D~--~ia~~~a~f~~pe~~~Gi~--p-~~~~-----~~l--------~~~v--G 157 (265)
T PRK05674 98 YRLKIPTLAVVQGAAFGGALGLISCCDM--AIGADDAQFCLSEVRIGLA--P-AVIS-----PFV--------VKAI--G 157 (265)
T ss_pred HcCCCCEEEEEcCEEEechhhHhhhcCE--EEEeCCCEEeCcccccCCC--c-chhH-----HHH--------HHHh--C
Confidence 7889999999999999999999999998 9999999987644333321 1 1110 001 1111 2
Q ss_pred HHHHHHHhcCCceeCHHHHHHcCCceEecCCcc
Q 028125 166 FEKITKDLSRIKRFGSQEALEYGLIDRIIRPPR 198 (213)
Q Consensus 166 ~~~i~~~~~~~~~~sa~EA~~~GLiD~I~~~~~ 198 (213)
.....+++-.+..|+++||+++||||+|...++
T Consensus 158 ~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~ 190 (265)
T PRK05674 158 ERAARRYALTAERFDGRRARELGLLAESYPAAE 190 (265)
T ss_pred HHHHHHHHHhCcccCHHHHHHCCCcceecCHHH
Confidence 234444444567799999999999999987654
No 97
>PRK09120 p-hydroxycinnamoyl CoA hydratase/lyase; Validated
Probab=98.73 E-value=3.3e-07 Score=79.11 Aligned_cols=146 Identities=11% Similarity=0.129 Sum_probs=96.7
Q ss_pred cEEEEccc-----cCcchHHHHHHHHHhhccCCCCCceEEEEe----CCCCChhHH-------------------HHHHH
Q 028125 32 RVIFIGQN-----IDEEFSNQILATMLYLDSVDDSKRVYMYIN----GPGGDVTPT-------------------LAIYD 83 (213)
Q Consensus 32 ~iI~i~G~-----I~~~~~~~l~~~l~~l~~~~~~~~I~l~IN----SpGG~v~~~-------------------~~I~~ 83 (213)
.+|+++-+ ++.++...+.+.+..++.+++.+.|+|.=+ |-|+++... ..++.
T Consensus 19 a~itlnrp~~~Nal~~~m~~el~~al~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (275)
T PRK09120 19 AWVTLNRPEKRNAMSPTLNREMIDVLDALEFDDDAGVLVLTGAGDAWSAGMDLKEYFRETDAQPEILQERIRREAYGWWR 98 (275)
T ss_pred EEEEecCcccccCCCHHHHHHHHHHHHHHHhCCCceEEEEEcCCCceecCcCHHHHhhccccchhHHHHHHHHHHHHHHH
Confidence 34555544 666777788888887776665565555321 233443220 12455
Q ss_pred HHHhcCCCeEEEEccccchHHHHHHhcCCCCcEeeccCCeEEEeCCCccCC---CChHHHHHHHHHHHHHHHHHHHHHHH
Q 028125 84 TMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAAR---GQADDIRNEADELLRVRDYIFKELSR 160 (213)
Q Consensus 84 ~i~~~~~~v~t~~~G~aaSaa~~I~~ag~~~~r~~~p~s~i~iH~p~~~~~---G~~~d~~~~~~~l~~~~~~~~~~~a~ 160 (213)
.|..+++||++.+.|.|..+|.-++++||. |++.++++|.+-....+.. |.. ..+ .+
T Consensus 99 ~l~~~~kPvIAav~G~a~GgG~~lal~cD~--~ia~~~a~f~~pe~~~Gl~p~~g~~----------~~l--------~~ 158 (275)
T PRK09120 99 RLRWYQKPTIAMVNGWCFGGGFSPLVACDL--AIAADEAQFGLSEINWGIPPGGGVS----------KAM--------AD 158 (275)
T ss_pred HHHhCCCCEEEEEcCEEechhHHHHHhCCE--EEEeCCcEecCCccccCCCCCcchH----------HHH--------HH
Confidence 677889999999999999999999999998 9999999987644333211 111 011 11
Q ss_pred HhCCCHHHHHHHhcCCceeCHHHHHHcCCceEecCCccc
Q 028125 161 KTGQPFEKITKDLSRIKRFGSQEALEYGLIDRIIRPPRI 199 (213)
Q Consensus 161 ~tg~~~~~i~~~~~~~~~~sa~EA~~~GLiD~I~~~~~~ 199 (213)
. +......+++-.+..|+++||+++||||+|...++.
T Consensus 159 ~--iG~~~a~~llltg~~~~A~eA~~~Glv~~vv~~~~l 195 (275)
T PRK09120 159 T--VGHRDALYYIMTGETFTGRKAAEMGLVNESVPLAQL 195 (275)
T ss_pred H--cCHHHHHHHHhcCCccCHHHHHHcCCcceecCHHHH
Confidence 1 123444555545677999999999999999887654
No 98
>PRK08272 enoyl-CoA hydratase; Provisional
Probab=98.71 E-value=2.8e-07 Score=80.55 Aligned_cols=146 Identities=12% Similarity=0.076 Sum_probs=98.3
Q ss_pred cEEEEccc-----cCcchHHHHHHHHHhhccCCCCCceEEEEe----CCCCChhHH------------------------
Q 028125 32 RVIFIGQN-----IDEEFSNQILATMLYLDSVDDSKRVYMYIN----GPGGDVTPT------------------------ 78 (213)
Q Consensus 32 ~iI~i~G~-----I~~~~~~~l~~~l~~l~~~~~~~~I~l~IN----SpGG~v~~~------------------------ 78 (213)
.+|+|+.+ ++.++...+.+.+..++.+++.+.|+|.=+ |-|+++.+.
T Consensus 21 ~~Itlnrp~~~Nal~~~m~~eL~~al~~~~~d~~vrvvVl~G~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (302)
T PRK08272 21 ARITLNRPEKGNAITADTPLELRAAVERADLDPGVHVILVSGAGKGFCAGYDLSAYAEGSSSGGGGGAYPGKRQAVNHLP 100 (302)
T ss_pred EEEEecCccccCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCCcccCcCHHHHhhcccccccccccccccccccccc
Confidence 44667665 667778888888888776665665554322 233444221
Q ss_pred ----------------HHHHHHHHhcCCCeEEEEccccchHHHHHHhcCCCCcEeeccCCeEEEeCCCccCCCChHHHHH
Q 028125 79 ----------------LAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRN 142 (213)
Q Consensus 79 ----------------~~I~~~i~~~~~~v~t~~~G~aaSaa~~I~~ag~~~~r~~~p~s~i~iH~p~~~~~G~~~d~~~ 142 (213)
..++..|..+++||++.+.|.|..+|.-++++||- |++.+++.|.+-.... .|-+..
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~lalacD~--~ias~~a~f~~pe~~~--gg~~~~--- 173 (302)
T PRK08272 101 DDPWDPMIDYQMMSRFVRGFMSLWHAHKPTVAKVHGYCVAGGTDIALHCDQ--VIAADDAKIGYPPTRV--WGVPAT--- 173 (302)
T ss_pred cccccchhhHHHHHHHHHHHHHHHhCCCCEEEEEccEeehhhHHHHHhCCE--EEEeCCCEecCcchhc--ccCChH---
Confidence 12456677889999999999999999999999998 9999999886533321 121110
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhcCCceeCHHHHHHcCCceEecCCccc
Q 028125 143 EADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRIIRPPRI 199 (213)
Q Consensus 143 ~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~~~~~~sa~EA~~~GLiD~I~~~~~~ 199 (213)
. .+ ... +......+++-.+..|+++||+++||||++...++.
T Consensus 174 -~----~~--------~~~--vG~~~A~~llltG~~i~a~eA~~~GLv~~vv~~~~l 215 (302)
T PRK08272 174 -G----MW--------AYR--LGPQRAKRLLFTGDCITGAQAAEWGLAVEAVPPEEL 215 (302)
T ss_pred -H----HH--------HHH--hhHHHHHHHHHcCCccCHHHHHHcCCCceecCHHHH
Confidence 0 00 111 234445556655788999999999999999876554
No 99
>PRK12478 enoyl-CoA hydratase; Provisional
Probab=98.71 E-value=1.8e-07 Score=81.73 Aligned_cols=145 Identities=14% Similarity=0.051 Sum_probs=99.2
Q ss_pred cEEEEccc-----cCcchHHHHHHHHHhhccCCCCCceEEEEe----CCCCChhH-------------------H-----
Q 028125 32 RVIFIGQN-----IDEEFSNQILATMLYLDSVDDSKRVYMYIN----GPGGDVTP-------------------T----- 78 (213)
Q Consensus 32 ~iI~i~G~-----I~~~~~~~l~~~l~~l~~~~~~~~I~l~IN----SpGG~v~~-------------------~----- 78 (213)
.+|+|+-+ ++.++.+.+.+.+..++.+++++.|+|.=+ |-|+++.. .
T Consensus 16 a~ItLnrP~~~NAl~~~~~~eL~~al~~~~~d~~vrvvVLtG~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (298)
T PRK12478 16 ATITLNRPEQLNTIVPPMPDEIEAAIGLAERDQDIKVIVLRGAGRAFSGGYDFGGGFQHWGEAMMTDGRWDPGKDFAMVT 95 (298)
T ss_pred EEEEecCCcccCCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCcccCcCccccccccchhcccccccCchhhhhhhh
Confidence 34667655 667777888888888876665665555321 23344421 0
Q ss_pred ------HHHHHHHHhcCCCeEEEEccccchHHHHHHhcCCCCcEeeccCCeEEEeCCCc-cCCCChHHHHHHHHHHHHHH
Q 028125 79 ------LAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAG-AARGQADDIRNEADELLRVR 151 (213)
Q Consensus 79 ------~~I~~~i~~~~~~v~t~~~G~aaSaa~~I~~ag~~~~r~~~p~s~i~iH~p~~-~~~G~~~d~~~~~~~l~~~~ 151 (213)
...+..|..+++||++.+.|.|..+|.-++++||- |++.+++.|.+-.... +... .. . +
T Consensus 96 ~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~LalacD~--ria~~~A~f~~pe~~l~G~~~--~~-------~--~- 161 (298)
T PRK12478 96 ARETGPTQKFMAIWRASKPVIAQVHGWCVGGASDYALCADI--VIASDDAVIGTPYSRMWGAYL--TG-------M--W- 161 (298)
T ss_pred hhhcchHHHHHHHHhCCCCEEEEEccEEehhHHHHHHHCCE--EEEcCCcEEeccccccccCCc--hh-------H--H-
Confidence 01345677889999999999999999999999998 9999999998655442 3221 00 0 0
Q ss_pred HHHHHHHHHHhCCCHHHHHHHhcCCceeCHHHHHHcCCceEecCCccc
Q 028125 152 DYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRIIRPPRI 199 (213)
Q Consensus 152 ~~~~~~~a~~tg~~~~~i~~~~~~~~~~sa~EA~~~GLiD~I~~~~~~ 199 (213)
..+ +......+++-.+..|+++||+++||||+|...++.
T Consensus 162 -------~~~--vG~~~A~~llltg~~i~A~eA~~~GLV~~vv~~~~l 200 (298)
T PRK12478 162 -------LYR--LSLAKVKWHSLTGRPLTGVQAAEAELINEAVPFERL 200 (298)
T ss_pred -------HHH--hhHHHHHHHHHcCCccCHHHHHHcCCcceecCHHHH
Confidence 011 234455566655788999999999999999876653
No 100
>PRK07112 polyketide biosynthesis enoyl-CoA hydratase; Validated
Probab=98.69 E-value=4.3e-07 Score=77.48 Aligned_cols=145 Identities=12% Similarity=0.027 Sum_probs=94.7
Q ss_pred cEEEEccc-----cCcchHHHHHHHHHhhccCCCCCceEEEE----eCCCCChhH-----------------HHHHHHHH
Q 028125 32 RVIFIGQN-----IDEEFSNQILATMLYLDSVDDSKRVYMYI----NGPGGDVTP-----------------TLAIYDTM 85 (213)
Q Consensus 32 ~iI~i~G~-----I~~~~~~~l~~~l~~l~~~~~~~~I~l~I----NSpGG~v~~-----------------~~~I~~~i 85 (213)
.+|+++-+ ++.++...+.+.+..++ ++.+.|+|.= =|.|+++.. ...++..|
T Consensus 15 ~~itlnrp~~~Nal~~~~~~~L~~~l~~~~--~~vr~vVl~g~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l 92 (255)
T PRK07112 15 CFLQLHRPEAQNTINDRLIAECMDVLDRCE--HAATIVVLEGLPEVFCFGADFSAIAEKPDAGRADLIDAEPLYDLWHRL 92 (255)
T ss_pred EEEEEcCCCccCCCCHHHHHHHHHHHHHhh--cCceEEEEEcCCCCcccCcCHHHHhhccccchhhhhhHHHHHHHHHHH
Confidence 44666655 56667777888887765 2344444421 134444321 01345567
Q ss_pred HhcCCCeEEEEccccchHHHHHHhcCCCCcEeeccCCeEEEeCCCccCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 028125 86 QSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQP 165 (213)
Q Consensus 86 ~~~~~~v~t~~~G~aaSaa~~I~~ag~~~~r~~~p~s~i~iH~p~~~~~G~~~d~~~~~~~l~~~~~~~~~~~a~~tg~~ 165 (213)
..+++||++.+.|.|..+|..++++||. |++.+++.|.+.....+... ... ...+ .+. +.
T Consensus 93 ~~~~kPvIaav~G~a~GgG~~lala~D~--~ia~~~a~f~~pe~~~Gl~p---~~~-----~~~l--------~~~--vg 152 (255)
T PRK07112 93 ATGPYVTIAHVRGKVNAGGIGFVAASDI--VIADETAPFSLSELLFGLIP---ACV-----LPFL--------IRR--IG 152 (255)
T ss_pred HcCCCCEEEEEecEEEcchhHHHHcCCE--EEEcCCCEEeCchhhhccCc---chh-----hHHH--------HHH--hC
Confidence 7789999999999999999999999998 99999999987555443311 100 0011 111 23
Q ss_pred HHHHHHHhcCCceeCHHHHHHcCCceEecCCcc
Q 028125 166 FEKITKDLSRIKRFGSQEALEYGLIDRIIRPPR 198 (213)
Q Consensus 166 ~~~i~~~~~~~~~~sa~EA~~~GLiD~I~~~~~ 198 (213)
.....+++-.+..++++||+++||||+|..+.+
T Consensus 153 ~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~ 185 (255)
T PRK07112 153 TQKAHYMTLMTQPVTAQQAFSWGLVDAYGANSD 185 (255)
T ss_pred HHHHHHHHHhCCcccHHHHHHcCCCceecCcHH
Confidence 344444554567799999999999999987654
No 101
>PLN02267 enoyl-CoA hydratase/isomerase family protein
Probab=98.68 E-value=9.1e-07 Score=74.89 Aligned_cols=146 Identities=15% Similarity=0.125 Sum_probs=92.3
Q ss_pred cEEEEccc----cCcchHHHHHHHHHhhccCCCCCceEEEEe-----CCCCChhH-----------------HHHHHHHH
Q 028125 32 RVIFIGQN----IDEEFSNQILATMLYLDSVDDSKRVYMYIN-----GPGGDVTP-----------------TLAIYDTM 85 (213)
Q Consensus 32 ~iI~i~G~----I~~~~~~~l~~~l~~l~~~~~~~~I~l~IN-----SpGG~v~~-----------------~~~I~~~i 85 (213)
.+|.|+.+ ++.+....+.+.+..++.+++...+++.=. |.|+++.. ...++..|
T Consensus 11 ~~i~Lnrp~~Nal~~~~~~eL~~al~~~~~d~~~~~vVV~~g~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l 90 (239)
T PLN02267 11 FILTLTGDGEHRLNPTLIDSIRSALRQVKSQATPGSVLITTAEGKFFSNGFDLAWAQAAGSAPSRLHLMVAKLRPLVADL 90 (239)
T ss_pred EEEEeCCCCcCcCCHHHHHHHHHHHHHHHhCCCCceEEEEcCCCCceeCCcCHHHHhccccCHHHHHHHHHHHHHHHHHH
Confidence 45667665 666777788888877765543333443322 33455421 01244567
Q ss_pred HhcCCCeEEEEccccchHHHHHHhcCCCCcEeecc-CCeEEEeCCCccCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 028125 86 QSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMP-LSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQ 164 (213)
Q Consensus 86 ~~~~~~v~t~~~G~aaSaa~~I~~ag~~~~r~~~p-~s~i~iH~p~~~~~G~~~d~~~~~~~l~~~~~~~~~~~a~~tg~ 164 (213)
..+++||++.+.|.|..+|..++++||. |++.+ .+.|.+.....+... .... ...+.++.|.
T Consensus 91 ~~~~kPvIAaV~G~a~GgG~~lalacD~--ria~~~~a~f~~pe~~~Gl~~--p~~~-------------~~~l~~~vG~ 153 (239)
T PLN02267 91 ISLPMPTIAAVTGHASAAGFILALSHDY--VLMRKDRGVLYMSEVDIGLPL--PDYF-------------MALLRAKIGS 153 (239)
T ss_pred hcCCCCEEEEECCcchHHHHHHHHHCCE--EEecCCCCeEeccccccCCCC--ChHH-------------HHHHHHHcCh
Confidence 7888999999999999999999999998 99985 456765444433211 1100 0111222232
Q ss_pred CHHHH-HHHhcCCceeCHHHHHHcCCceEecCC
Q 028125 165 PFEKI-TKDLSRIKRFGSQEALEYGLIDRIIRP 196 (213)
Q Consensus 165 ~~~~i-~~~~~~~~~~sa~EA~~~GLiD~I~~~ 196 (213)
... .+++-.+..|+++||+++||||+|...
T Consensus 154 --~~a~~~llltG~~~~a~eA~~~Glv~~vv~~ 184 (239)
T PLN02267 154 --PAARRDVLLRAAKLTAEEAVEMGIVDSAHDS 184 (239)
T ss_pred --HHHHHHHHHcCCcCCHHHHHHCCCcceecCC
Confidence 223 244545688999999999999999874
No 102
>PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional
Probab=98.65 E-value=2.9e-07 Score=86.59 Aligned_cols=143 Identities=12% Similarity=0.067 Sum_probs=91.6
Q ss_pred cCcchHHHHHHHHHhhc-cCCCCCceEEEEe-----CCCCChhHH---------------HH----HHHHHHhcCCCeEE
Q 028125 40 IDEEFSNQILATMLYLD-SVDDSKRVYMYIN-----GPGGDVTPT---------------LA----IYDTMQSLKSPVGT 94 (213)
Q Consensus 40 I~~~~~~~l~~~l~~l~-~~~~~~~I~l~IN-----SpGG~v~~~---------------~~----I~~~i~~~~~~v~t 94 (213)
++.++...+.+.+..++ .+++.+.|+|.=+ |.|+++... .. +.+.++.+++||++
T Consensus 49 l~~~m~~eL~~al~~~~~~d~~vrvVVLtg~ggk~FcaG~DL~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~pkPvIA 128 (550)
T PRK08184 49 YDLGVDIELHDALQRIRFEHPEVRTVVVTSAKDRVFCSGANIFMLGGSSHAWKVNFCKFTNETRNGIEDSSRHSGLKFIA 128 (550)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCeEEEEEecCCCCCCCCccCHHhHhccccchhhhHHHHHHHHHHHHHHHHHhCCCCEEE
Confidence 55566777888888776 4455566666432 455654321 01 34567778999999
Q ss_pred EEccccchHHHHHHhcCCCCcEeeccC--CeEEEeCCC-ccCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHH
Q 028125 95 HCVGFAYHLAGFLLAGGEKGNRSAMPL--SRIALDSPA-GAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITK 171 (213)
Q Consensus 95 ~~~G~aaSaa~~I~~ag~~~~r~~~p~--s~i~iH~p~-~~~~G~~~d~~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~ 171 (213)
.+.|.|..+|..++++||. |++.++ ++|.+-... .+.. ..... +..+ ...+........+
T Consensus 129 AVnG~a~GGG~~LALacD~--rIas~~~~a~fg~pEv~~~Gl~---P~~gg----~~rl--------~~~~~vg~~~A~~ 191 (550)
T PRK08184 129 AVNGTCAGGGYELALACDE--IVLVDDRSSAVSLPEVPLLGVL---PGTGG----LTRV--------TDKRKVRRDLADI 191 (550)
T ss_pred EECCEeehHHHHHHHhCCE--EEEecCCCcEEEccchhccccC---CCcch----HHHh--------hhhhhcCHHHHHH
Confidence 9999999999999999998 999987 666653331 2110 00000 0011 1112233444455
Q ss_pred HhcCCceeCHHHHHHcCCceEecCCccc
Q 028125 172 DLSRIKRFGSQEALEYGLIDRIIRPPRI 199 (213)
Q Consensus 172 ~~~~~~~~sa~EA~~~GLiD~I~~~~~~ 199 (213)
++-.+..|+++||+++||||++..++++
T Consensus 192 llltG~~i~AeeA~~~GLVd~vv~~d~l 219 (550)
T PRK08184 192 FCTIEEGVRGKRAVDWRLVDEVVKPSKF 219 (550)
T ss_pred HHHhCCcccHHHHHHcCCccEeeCHHHH
Confidence 5444678999999999999999986654
No 103
>PRK07659 enoyl-CoA hydratase; Provisional
Probab=98.63 E-value=5.3e-07 Score=77.09 Aligned_cols=140 Identities=19% Similarity=0.207 Sum_probs=93.7
Q ss_pred EEEEccc-----cCcchHHHHHHHHHhhccCCCCCceEEEEeCCC------CChhHH----------------HHHHHHH
Q 028125 33 VIFIGQN-----IDEEFSNQILATMLYLDSVDDSKRVYMYINGPG------GDVTPT----------------LAIYDTM 85 (213)
Q Consensus 33 iI~i~G~-----I~~~~~~~l~~~l~~l~~~~~~~~I~l~INSpG------G~v~~~----------------~~I~~~i 85 (213)
+|+++-+ ++.++...+.+.+..+ .+++.+.| .+.+.| +++..- ..++..|
T Consensus 18 ~itlnrp~~~Nal~~~~~~~l~~~l~~~-~d~~vrvv--vl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l 94 (260)
T PRK07659 18 TIMLNRPEALNALDEPMLKELLQALKEV-AESSAHIV--VLRGNGRGFSAGGDIKMMLSSNDESKFDGVMNTISEIVVTL 94 (260)
T ss_pred EEEeCCcccccCCCHHHHHHHHHHHHHh-cCCCeeEE--EEECCCCCcccccCHHHHhhccCchhHHHHHHHHHHHHHHH
Confidence 4566554 5666778888888877 34444433 334444 444321 1234556
Q ss_pred HhcCCCeEEEEccccchHHHHHHhcCCCCcEeeccCCeEEEeCCCccCC---CChHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028125 86 QSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAAR---GQADDIRNEADELLRVRDYIFKELSRKT 162 (213)
Q Consensus 86 ~~~~~~v~t~~~G~aaSaa~~I~~ag~~~~r~~~p~s~i~iH~p~~~~~---G~~~d~~~~~~~l~~~~~~~~~~~a~~t 162 (213)
..+++||++.+.|.|..+|.-++++||. |++.++++|.+.....+.. |... .+. +.
T Consensus 95 ~~~~~pvIaav~G~a~GgG~~lalacD~--ria~~~a~f~~pe~~~Gl~p~~g~~~----------~L~--------~~- 153 (260)
T PRK07659 95 YTMPKLTISAIHGPAAGLGLSIALTADY--VIADISAKLAMNFIGIGLIPDGGGHF----------FLQ--------KR- 153 (260)
T ss_pred HhCCCCEEEEecCceecHHHHHHHhCCE--EEEcCCCEEcCchhhcCCCCCCchhh----------hHH--------Hh-
Confidence 6788999999999999999999999998 9999999987655443321 1111 111 11
Q ss_pred CCCHHHHHHHhcCCceeCHHHHHHcCCceEecCCcc
Q 028125 163 GQPFEKITKDLSRIKRFGSQEALEYGLIDRIIRPPR 198 (213)
Q Consensus 163 g~~~~~i~~~~~~~~~~sa~EA~~~GLiD~I~~~~~ 198 (213)
+......+++-.+..|+++||+++||||+|. .++
T Consensus 154 -vg~~~a~~l~ltg~~~~a~eA~~~Glv~~vv-~~~ 187 (260)
T PRK07659 154 -VGENKAKQIIWEGKKLSATEALDLGLIDEVI-GGD 187 (260)
T ss_pred -cCHHHHHHHHHhCCccCHHHHHHcCChHHHh-hhH
Confidence 3345555666567889999999999999997 544
No 104
>PRK05870 enoyl-CoA hydratase; Provisional
Probab=98.62 E-value=5e-07 Score=76.79 Aligned_cols=141 Identities=18% Similarity=0.095 Sum_probs=93.8
Q ss_pred cEEEEccc-----cCcchHHHHHHHHHhhccCCCCCceEEEEe----CCCCChhHH---------------HHHHHHHHh
Q 028125 32 RVIFIGQN-----IDEEFSNQILATMLYLDSVDDSKRVYMYIN----GPGGDVTPT---------------LAIYDTMQS 87 (213)
Q Consensus 32 ~iI~i~G~-----I~~~~~~~l~~~l~~l~~~~~~~~I~l~IN----SpGG~v~~~---------------~~I~~~i~~ 87 (213)
.+|+++-+ ++.++.+.+.+.+..++.+++.+.|+|.=. |.|+++..- ...+..|..
T Consensus 14 ~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~ 93 (249)
T PRK05870 14 ALITVNDPDRRNAVTAEMSAQLRAAVAAAEADPDVHALVVTGAGKAFCAGADLTALGAAPGRPAEDGLRRIYDGFLAVAS 93 (249)
T ss_pred EEEEEcCCCccCCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCCeecCcChHHHhcccccchHHHHHHHHHHHHHHHh
Confidence 34666654 566677888888887776655555554311 233443221 123455778
Q ss_pred cCCCeEEEEccccchHHHHHHhcCCCCcEeeccCCeEEEeCCCccC---CCChHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 028125 88 LKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAA---RGQADDIRNEADELLRVRDYIFKELSRKTGQ 164 (213)
Q Consensus 88 ~~~~v~t~~~G~aaSaa~~I~~ag~~~~r~~~p~s~i~iH~p~~~~---~G~~~d~~~~~~~l~~~~~~~~~~~a~~tg~ 164 (213)
+++||++.+.|.|..+|.-++++||- |++.+++.|.+.....+. .|-.. .+ .+. .
T Consensus 94 ~~kPvIaav~G~a~GgG~~lal~cD~--ria~~~a~f~~pe~~~G~~p~~g~~~----------~l--------~~~--~ 151 (249)
T PRK05870 94 CPLPTIAAVNGAAVGAGLNLALAADV--RIAGPKALFDARFQKLGLHPGGGATW----------ML--------QRA--V 151 (249)
T ss_pred CCCCEEEEECCEeEchhHHHHHhCCE--EEEcCCCEEeCcccccCcCCCCccee----------eH--------Hhh--h
Confidence 89999999999999999999999998 999999998765544331 11110 01 111 2
Q ss_pred CHHHHHHHhcCCceeCHHHHHHcCCceEec
Q 028125 165 PFEKITKDLSRIKRFGSQEALEYGLIDRII 194 (213)
Q Consensus 165 ~~~~i~~~~~~~~~~sa~EA~~~GLiD~I~ 194 (213)
......+++-.++.++++||+++||||+|.
T Consensus 152 G~~~a~~l~ltg~~~~a~eA~~~Glv~~vv 181 (249)
T PRK05870 152 GPQVARAALLFGMRFDAEAAVRHGLALMVA 181 (249)
T ss_pred CHHHHHHHHHhCCccCHHHHHHcCCHHHHH
Confidence 334445555456789999999999999987
No 105
>PRK12319 acetyl-CoA carboxylase subunit alpha; Provisional
Probab=98.59 E-value=8e-07 Score=76.02 Aligned_cols=135 Identities=21% Similarity=0.178 Sum_probs=91.5
Q ss_pred cEEEEccccCcchHHHHHHHHHhhccCCCCCceEEEEeCCCCChhH-------HHHHHHHHH---hcCCCeEEEEccccc
Q 028125 32 RVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTP-------TLAIYDTMQ---SLKSPVGTHCVGFAY 101 (213)
Q Consensus 32 ~iI~i~G~I~~~~~~~l~~~l~~l~~~~~~~~I~l~INSpGG~v~~-------~~~I~~~i~---~~~~~v~t~~~G~aa 101 (213)
++....|.++++.++.....+..+++ -.-+|+-.+||||..+.. +..+...+. ...+|+++++.|.|.
T Consensus 71 ~~~~~~G~~~~~g~rKa~R~~~lA~~--~~lPvV~lvDtpGa~~g~~aE~~G~~~~ia~~~~~~s~~~VP~IsVI~G~~~ 148 (256)
T PRK12319 71 NLKRNFGQPHPEGYRKALRLMKQAEK--FGRPVVTFINTAGAYPGVGAEERGQGEAIARNLMEMSDLKVPIIAIIIGEGG 148 (256)
T ss_pred ceeeeCCCCCHHHHHHHHHHHHHHHH--cCCCEEEEEECCCcCCCHhHHhccHHHHHHHHHHHHhCCCCCEEEEEeCCcC
Confidence 33445576777777776665554332 356899999999987522 234544444 346899999999999
Q ss_pred hHHHHHHhcCCCCcEeeccCCeEEEeCCCccCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhcCCceeCH
Q 028125 102 HLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGS 181 (213)
Q Consensus 102 Saa~~I~~ag~~~~r~~~p~s~i~iH~p~~~~~G~~~d~~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~~~~~~sa 181 (213)
|+|++.+..+|. .+|.|++.+.+-.|.... .+ .++ + ....++..+.+ -+|+
T Consensus 149 gGgA~a~~~~D~--v~m~~~a~~~v~~pe~~a-----~i--l~~------~----------~~~a~~aa~~~----~~~a 199 (256)
T PRK12319 149 SGGALALAVADQ--VWMLENTMYAVLSPEGFA-----SI--LWK------D----------GSRATEAAELM----KITA 199 (256)
T ss_pred cHHHHHhhcCCE--EEEecCceEEEcCHHHHH-----HH--Hhc------C----------cccHHHHHHHc----CCCH
Confidence 999999999998 999999998876664321 00 000 0 01223333333 2599
Q ss_pred HHHHHcCCceEecCCc
Q 028125 182 QEALEYGLIDRIIRPP 197 (213)
Q Consensus 182 ~EA~~~GLiD~I~~~~ 197 (213)
.++.+.|+||+|+...
T Consensus 200 ~~l~~~g~iD~ii~e~ 215 (256)
T PRK12319 200 GELLEMGVVDKVIPEH 215 (256)
T ss_pred HHHHHCCCCcEecCCC
Confidence 9999999999999864
No 106
>TIGR00513 accA acetyl-CoA carboxylase, carboxyl transferase, alpha subunit. The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the alpha chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.
Probab=98.57 E-value=7.8e-07 Score=78.01 Aligned_cols=136 Identities=21% Similarity=0.198 Sum_probs=92.4
Q ss_pred CcEEEEccccCcchHHHHHHHHHhhccCCCCCceEEEEeCCCCChhH-------HHHHHHHH---HhcCCCeEEEEcccc
Q 028125 31 ERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTP-------TLAIYDTM---QSLKSPVGTHCVGFA 100 (213)
Q Consensus 31 ~~iI~i~G~I~~~~~~~l~~~l~~l~~~~~~~~I~l~INSpGG~v~~-------~~~I~~~i---~~~~~~v~t~~~G~a 100 (213)
+++-...|.++++.++.....+..++. -.-+|+-.+||||..+.. +..+...+ ....+|+++++.|.|
T Consensus 123 e~~~~~~G~~~p~g~rKa~R~m~lA~~--f~iPvVtlvDTpGa~~g~~aE~~G~~~aia~~l~a~s~~~VP~IsVViGeg 200 (316)
T TIGR00513 123 EKLRRNFGMPAPEGYRKALRLMKMAER--FKMPIITFIDTPGAYPGIGAEERGQSEAIARNLREMARLGVPVICTVIGEG 200 (316)
T ss_pred ccccccCCCCCHHHHHHHHHHHHHHHH--cCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeccc
Confidence 344445677777777776666554432 356999999999987322 33455555 355699999999999
Q ss_pred chHHHHHHhcCCCCcEeeccCCeEEEeCCCccCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhcCCceeC
Q 028125 101 YHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFG 180 (213)
Q Consensus 101 aSaa~~I~~ag~~~~r~~~p~s~i~iH~p~~~~~G~~~d~~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~~~~~~s 180 (213)
+|+|++.+..+|. .+|.|++.+.+-.|.+.. . ..++. . ...++..+. .-+|
T Consensus 201 gsGGAla~~~aD~--v~m~~~a~~sVisPEg~a-----~--Il~kd--~--------------~~a~~aae~----~~~t 251 (316)
T TIGR00513 201 GSGGALAIGVGDK--VNMLEYSTYSVISPEGCA-----A--ILWKD--A--------------SKAPKAAEA----MKIT 251 (316)
T ss_pred ccHHHhhhccCCE--EEEecCceEEecCHHHHH-----H--Hhccc--h--------------hhHHHHHHH----ccCC
Confidence 9999998888988 999999999876665421 0 00000 0 001222322 3368
Q ss_pred HHHHHHcCCceEecCCc
Q 028125 181 SQEALEYGLIDRIIRPP 197 (213)
Q Consensus 181 a~EA~~~GLiD~I~~~~ 197 (213)
++++++.|+||+|+...
T Consensus 252 a~~l~~~G~iD~II~ep 268 (316)
T TIGR00513 252 APDLKELGLIDSIIPEP 268 (316)
T ss_pred HHHHHHCCCCeEeccCC
Confidence 99999999999999754
No 107
>PLN03230 acetyl-coenzyme A carboxylase carboxyl transferase; Provisional
Probab=98.56 E-value=6.9e-07 Score=80.52 Aligned_cols=130 Identities=16% Similarity=0.152 Sum_probs=87.9
Q ss_pred ccccCcchHHHHHHHHHhhccCCCCCceEEEEeCCCCChhH-------HHHHHHHH---HhcCCCeEEEEccccchHHHH
Q 028125 37 GQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTP-------TLAIYDTM---QSLKSPVGTHCVGFAYHLAGF 106 (213)
Q Consensus 37 ~G~I~~~~~~~l~~~l~~l~~~~~~~~I~l~INSpGG~v~~-------~~~I~~~i---~~~~~~v~t~~~G~aaSaa~~ 106 (213)
.|.++++.+......+..++. -.-+|+-+|||||..+.. +..|...+ -...+|+++++.|.+.|+|++
T Consensus 199 fG~~~peGyRKAlR~mklAek--f~lPIVtLVDTpGA~pG~~AEe~Gqa~aIAr~l~ams~l~VPiISVViGeGgSGGAl 276 (431)
T PLN03230 199 FAMPQPNGYRKALRFMRHAEK--FGFPILTFVDTPGAYAGIKAEELGQGEAIAFNLREMFGLRVPIIATVIGEGGSGGAL 276 (431)
T ss_pred CCCCCHHHHHHHHHHHHHHHH--cCCCEEEEEeCCCcCCCHHHHHHhHHHHHHHHHHHHhcCCCCEEEEEeCCCCcHHHH
Confidence 466777777766666554433 256899999999976422 23455544 455689999999999999999
Q ss_pred HHhcCCCCcEeeccCCeEEEeCCCccCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhcCCceeCHHHHHH
Q 028125 107 LLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALE 186 (213)
Q Consensus 107 I~~ag~~~~r~~~p~s~i~iH~p~~~~~G~~~d~~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~~~~~~sa~EA~~ 186 (213)
.+.+||. .+|.+++.+.+-.|.... ...++ + . ...++..+. .-+||+++++
T Consensus 277 alg~aD~--VlMle~A~ysVisPEgaA-------sILwk------d---------~-~~A~eAAea----lkitA~dL~~ 327 (431)
T PLN03230 277 AIGCGNR--MLMMENAVYYVASPEACA-------AILWK------S---------A-AAAPKAAEA----LRITAAELVK 327 (431)
T ss_pred HhhcCCE--EEEecCCEEEecCHHHHH-------HHHhc------c---------c-cchHHHHHH----cCCCHHHHHh
Confidence 9999988 999999988766654310 00000 0 0 001112222 2479999999
Q ss_pred cCCceEecCCc
Q 028125 187 YGLIDRIIRPP 197 (213)
Q Consensus 187 ~GLiD~I~~~~ 197 (213)
+|+||+|+...
T Consensus 328 ~GiID~II~Ep 338 (431)
T PLN03230 328 LGVVDEIVPEP 338 (431)
T ss_pred CCCCeEeccCC
Confidence 99999999754
No 108
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=98.54 E-value=1.5e-06 Score=84.09 Aligned_cols=148 Identities=15% Similarity=0.170 Sum_probs=97.8
Q ss_pred cEEEEccc------cCcchHHHHHHHHHhhccCCCCCceEEEE-----eCCCCChhH----------------HHHHHHH
Q 028125 32 RVIFIGQN------IDEEFSNQILATMLYLDSVDDSKRVYMYI-----NGPGGDVTP----------------TLAIYDT 84 (213)
Q Consensus 32 ~iI~i~G~------I~~~~~~~l~~~l~~l~~~~~~~~I~l~I-----NSpGG~v~~----------------~~~I~~~ 84 (213)
.+|.|+-+ ++.++...+.+.+..++.+++.+.|+|.= =|-|+++.. ...+++.
T Consensus 12 a~itlnrp~~~~Nal~~~~~~eL~~~l~~~~~d~~vr~VVl~~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (699)
T TIGR02440 12 AILTIDVPGEKMNTLKAEFADQVSEILSQLKRDKSIRGLVLVSGKPDNFIAGADISMLAACQTAGEAKALAQQGQVLFAE 91 (699)
T ss_pred EEEEECCCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCceeeccCchhhhccCChhHHHHHHHHHHHHHHH
Confidence 45667655 56666778888888777665555554431 134455432 1346677
Q ss_pred HHhcCCCeEEEEccccchHHHHHHhcCCCCcEeeccC--CeEEEeCCCccCC-CChHHHHHHHHHHHHHHHHHHHHHHHH
Q 028125 85 MQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPL--SRIALDSPAGAAR-GQADDIRNEADELLRVRDYIFKELSRK 161 (213)
Q Consensus 85 i~~~~~~v~t~~~G~aaSaa~~I~~ag~~~~r~~~p~--s~i~iH~p~~~~~-G~~~d~~~~~~~l~~~~~~~~~~~a~~ 161 (213)
|..+++||++.+.|.|..+|.-++++||. |++.++ +.|.+.....+.. +.-. ...+.+ .
T Consensus 92 l~~~~kPvIAaVnG~a~GgG~~LaLacD~--ria~~~~~a~fg~pev~lGl~p~~g~--------~~~L~r--------~ 153 (699)
T TIGR02440 92 LEALPIPVVAAIHGACLGGGLELALACHS--RVCSDDDKTVLGLPEVQLGLLPGSGG--------TQRLPR--------L 153 (699)
T ss_pred HHhCCCCEEEEECCEeecHHHHHHHhCCE--EEEcCCCCcEEechhhcccCCCCccH--------HHHHHH--------h
Confidence 88899999999999999999999999998 999987 5666554443321 1100 011111 1
Q ss_pred hCCCHHHHHHHhcCCceeCHHHHHHcCCceEecCCccc
Q 028125 162 TGQPFEKITKDLSRIKRFGSQEALEYGLIDRIIRPPRI 199 (213)
Q Consensus 162 tg~~~~~i~~~~~~~~~~sa~EA~~~GLiD~I~~~~~~ 199 (213)
.......+++-.+..++++||+++||||+|...++.
T Consensus 154 --vG~~~A~~llltG~~~~a~eA~~~GLV~~vv~~~~l 189 (699)
T TIGR02440 154 --IGVSTALDMILTGKQLRAKQALKLGLVDDVVPQSIL 189 (699)
T ss_pred --cCHHHHHHHHHcCCcCCHHHHHhCCCCcEecChhHH
Confidence 122333455555788999999999999999987653
No 109
>PRK05724 acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated
Probab=98.54 E-value=1.2e-06 Score=76.92 Aligned_cols=135 Identities=20% Similarity=0.208 Sum_probs=90.9
Q ss_pred cEEEEccccCcchHHHHHHHHHhhccCCCCCceEEEEeCCCCChhH-------HHHHHHHHH---hcCCCeEEEEccccc
Q 028125 32 RVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTP-------TLAIYDTMQ---SLKSPVGTHCVGFAY 101 (213)
Q Consensus 32 ~iI~i~G~I~~~~~~~l~~~l~~l~~~~~~~~I~l~INSpGG~v~~-------~~~I~~~i~---~~~~~v~t~~~G~aa 101 (213)
++-...|.++++.++.....+..++. -.-+|+-.+||||..+.. +..+...+. ...+|+++++.|.|.
T Consensus 124 ~~~~~~G~~~peg~rKa~R~m~lA~~--f~lPIVtlvDTpGa~~G~~aE~~G~~~aia~~l~~~a~~~VP~IsVIiGeg~ 201 (319)
T PRK05724 124 KIRRNFGMPRPEGYRKALRLMKMAEK--FGLPIITFIDTPGAYPGIGAEERGQSEAIARNLREMARLKVPIICTVIGEGG 201 (319)
T ss_pred cccccCCCCCHHHHHHHHHHHHHHHH--cCCCEEEEEeCCCCCCCHHHHhccHHHHHHHHHHHHhCCCCCEEEEEeCCcc
Confidence 33445666777777766665554432 356999999999976431 234444444 566999999999999
Q ss_pred hHHHHHHhcCCCCcEeeccCCeEEEeCCCccCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhcCCceeCH
Q 028125 102 HLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGS 181 (213)
Q Consensus 102 Saa~~I~~ag~~~~r~~~p~s~i~iH~p~~~~~G~~~d~~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~~~~~~sa 181 (213)
|+|++.+..+|. .+|.|++.+.+-.|.+.. . ..++ + . ...++..+ ..-+|+
T Consensus 202 sGGAla~~~aD~--v~m~~~A~~svisPEg~a-----~--Il~~------~---------~-~~a~~aae----~~~ita 252 (319)
T PRK05724 202 SGGALAIGVGDR--VLMLEYSTYSVISPEGCA-----S--ILWK------D---------A-SKAPEAAE----AMKITA 252 (319)
T ss_pred HHHHHHHhccCe--eeeecCceEeecCHHHHH-----H--HHhc------C---------c-hhHHHHHH----HcCCCH
Confidence 999999999998 999999998766665321 0 0000 0 0 01223333 233799
Q ss_pred HHHHHcCCceEecCCc
Q 028125 182 QEALEYGLIDRIIRPP 197 (213)
Q Consensus 182 ~EA~~~GLiD~I~~~~ 197 (213)
+++++.|+||+|+...
T Consensus 253 ~~l~~~g~iD~II~Ep 268 (319)
T PRK05724 253 QDLKELGIIDEIIPEP 268 (319)
T ss_pred HHHHHCCCceEeccCC
Confidence 9999999999999754
No 110
>PRK07827 enoyl-CoA hydratase; Provisional
Probab=98.53 E-value=2.1e-06 Score=73.37 Aligned_cols=142 Identities=16% Similarity=0.146 Sum_probs=89.6
Q ss_pred cEEEEccc-----cCcchHHHHHHHHHhhccCCCCCceEEEEeCCC------CChhH------------------HHHHH
Q 028125 32 RVIFIGQN-----IDEEFSNQILATMLYLDSVDDSKRVYMYINGPG------GDVTP------------------TLAIY 82 (213)
Q Consensus 32 ~iI~i~G~-----I~~~~~~~l~~~l~~l~~~~~~~~I~l~INSpG------G~v~~------------------~~~I~ 82 (213)
.+|.++-+ ++.++...+.+.+..++.+++.+.|+| .+.| +++.. ...++
T Consensus 17 ~~i~lnrp~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVl--tg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (260)
T PRK07827 17 ATLTLDSPHNRNALSARLVAQLHDGLRAAAADPAVRAVVL--THTGGTFCAGADLSEAGGGGGDPYDAAVARAREMTALL 94 (260)
T ss_pred EEEEEcCccccCCCCHHHHHHHHHHHHHHhcCCCeeEEEE--EcCCCCccCCcChHHHhhcccCchhHHHHHHHHHHHHH
Confidence 44666654 566667778888877765554444444 4444 33321 02245
Q ss_pred HHHHhcCCCeEEEEccccchHHHHHHhcCCCCcEeeccCCeEEEeCCCccCCCChHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028125 83 DTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKT 162 (213)
Q Consensus 83 ~~i~~~~~~v~t~~~G~aaSaa~~I~~ag~~~~r~~~p~s~i~iH~p~~~~~G~~~d~~~~~~~l~~~~~~~~~~~a~~t 162 (213)
+.|..+++||++.+.|.|..+|.-++++||. |++.+++.|.+-....+.. + +... ...+.+.
T Consensus 95 ~~l~~~~kPvIaav~G~a~GgG~~lalacD~--ria~~~a~f~~pe~~~Gl~--p-~~g~----~~~l~~l--------- 156 (260)
T PRK07827 95 RAIVELPKPVIAAIDGHVRAGGFGLVGACDI--VVAGPESTFALTEARIGVA--P-AIIS----LTLLPRL--------- 156 (260)
T ss_pred HHHHhCCCCEEEEEcCeeecchhhHHHhCCE--EEEcCCCEEeCcccccCCC--C-Cccc----chhHHhh---------
Confidence 6677889999999999999999999999998 9999999887644333221 0 0000 0011110
Q ss_pred CCCHHHHHHHhcCCceeCHHHHHHcCCceEecC
Q 028125 163 GQPFEKITKDLSRIKRFGSQEALEYGLIDRIIR 195 (213)
Q Consensus 163 g~~~~~i~~~~~~~~~~sa~EA~~~GLiD~I~~ 195 (213)
+ .....+++-.+..++++||+++||||++.+
T Consensus 157 ~--~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~ 187 (260)
T PRK07827 157 S--PRAAARYYLTGEKFGAAEAARIGLVTAAAD 187 (260)
T ss_pred h--HHHHHHHHHhCCccCHHHHHHcCCcccchH
Confidence 0 011233333457789999999999999863
No 111
>COG1024 CaiD Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism]
Probab=98.51 E-value=1.5e-06 Score=74.13 Aligned_cols=144 Identities=19% Similarity=0.200 Sum_probs=99.0
Q ss_pred CcEEEEccc-----cCcchHHHHHHHHHhhccCCCCCceEEEEe----CCCCChhHHH----------------HHHHHH
Q 028125 31 ERVIFIGQN-----IDEEFSNQILATMLYLDSVDDSKRVYMYIN----GPGGDVTPTL----------------AIYDTM 85 (213)
Q Consensus 31 ~~iI~i~G~-----I~~~~~~~l~~~l~~l~~~~~~~~I~l~IN----SpGG~v~~~~----------------~I~~~i 85 (213)
..+|+|+-+ ++.++...+.+.+..++.++.++.|+|.=+ |-|+++..-. .+...|
T Consensus 15 v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vvltg~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l 94 (257)
T COG1024 15 IAVITLNRPEKLNALNLEMLDELAEALDEAEADPDVRVVVLTGAGKAFSAGADLKELLSPEDGNAAENLMQPGQDLLRAL 94 (257)
T ss_pred EEEEEecCcccccCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCceecccCHHHHhcccchhHHHHHHhHHHHHHHHH
Confidence 345666543 667778888888888877655554444322 3345554311 266788
Q ss_pred HhcCCCeEEEEccccchHHHHHHhcCCCCcEeeccCCeEEEeCCCccCC---CChHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028125 86 QSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAAR---GQADDIRNEADELLRVRDYIFKELSRKT 162 (213)
Q Consensus 86 ~~~~~~v~t~~~G~aaSaa~~I~~ag~~~~r~~~p~s~i~iH~p~~~~~---G~~~d~~~~~~~l~~~~~~~~~~~a~~t 162 (213)
+.+++||++.+.|.|..+|.-++++||. |++.++++|.+.....+.. |...- +.+ .
T Consensus 95 ~~~~kPvIAav~G~a~GgG~eLal~~D~--ria~~~a~f~~pe~~iGl~Pg~g~~~~-------l~r-----------~- 153 (257)
T COG1024 95 ADLPKPVIAAVNGYALGGGLELALACDI--RIAAEDAKFGLPEVNLGLLPGDGGTQR-------LPR-----------L- 153 (257)
T ss_pred HhCCCCEEEEEcceEeechhhhhhcCCe--EEecCCcEecCcccccccCCCCcHHHH-------HHH-----------h-
Confidence 9999999999999999999999999998 9999999998777654321 21111 111 1
Q ss_pred CCCHHHHHHHhcCCceeCHHHHHHcCCceEecCC
Q 028125 163 GQPFEKITKDLSRIKRFGSQEALEYGLIDRIIRP 196 (213)
Q Consensus 163 g~~~~~i~~~~~~~~~~sa~EA~~~GLiD~I~~~ 196 (213)
.......+++-.+..++++||+++||||++...
T Consensus 154 -~G~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~ 186 (257)
T COG1024 154 -LGRGRAKELLLTGEPISAAEALELGLVDEVVPD 186 (257)
T ss_pred -cCHHHHHHHHHcCCcCCHHHHHHcCCcCeeeCC
Confidence 122333334444678999999999999998875
No 112
>KOG1680 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=98.50 E-value=1.5e-06 Score=74.24 Aligned_cols=146 Identities=18% Similarity=0.180 Sum_probs=100.8
Q ss_pred cEEEEccc-----cCcchHHHHHHHHHhhccCCCCCceEEEEe----CCCCChhH-------------HHHHHHHHHhcC
Q 028125 32 RVIFIGQN-----IDEEFSNQILATMLYLDSVDDSKRVYMYIN----GPGGDVTP-------------TLAIYDTMQSLK 89 (213)
Q Consensus 32 ~iI~i~G~-----I~~~~~~~l~~~l~~l~~~~~~~~I~l~IN----SpGG~v~~-------------~~~I~~~i~~~~ 89 (213)
.+|.|+-| ++..+...+.+.+..+++++....|+|+=. +-|.++.+ -+.-++.+..++
T Consensus 48 ~lItlNRP~~~Nal~~~~m~eL~~A~~~~e~D~s~~viVltG~gksFcsG~Dl~e~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (290)
T KOG1680|consen 48 ALITLNRPKALNALCRATMLELAEAFKDFESDDSVGVIVLTGSGKSFCSGADLKEMKKDEFQDVSDGIFLRVWDLVSRLK 127 (290)
T ss_pred EEEEeCChHHhccccHHHHHHHHHHHHHhhccCcccEEEEEcCCCccccccCHHHHhhccccccccccccchhhhhhhcc
Confidence 34555544 555667888899988888776666555421 12233222 223446666788
Q ss_pred CCeEEEEccccchHHHHHHhcCCCCcEeeccCCeEEEeCCCccC---CCChHHHHHHHHHHHHHHHHHHHHHHHHhCCCH
Q 028125 90 SPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAA---RGQADDIRNEADELLRVRDYIFKELSRKTGQPF 166 (213)
Q Consensus 90 ~~v~t~~~G~aaSaa~~I~~ag~~~~r~~~p~s~i~iH~p~~~~---~G~~~d~~~~~~~l~~~~~~~~~~~a~~tg~~~ 166 (213)
+||++-+.|+|-.+|.-+++.||- |+|.+++.|++-++..+. .|-.. ++-+. .-+
T Consensus 128 KPvIaainG~AlgGG~ELalmCDi--rva~~~Akfg~~~~~~Gi~p~~GGT~----------rl~r~----------vG~ 185 (290)
T KOG1680|consen 128 KPVIAAINGFALGGGLELALMCDI--RVAGEGAKFGFFEIRMGIIPSWGGTQ----------RLPRI----------VGK 185 (290)
T ss_pred cceeEeeeceeeccchhhhhhcce--EeccCCCeecccccccCCccCCCchh----------hHHHH----------hCh
Confidence 999999999999999999999999 999999999987766441 22111 11111 123
Q ss_pred HHHHHHhcCCceeCHHHHHHcCCceEecCCccc
Q 028125 167 EKITKDLSRIKRFGSQEALEYGLIDRIIRPPRI 199 (213)
Q Consensus 167 ~~i~~~~~~~~~~sa~EA~~~GLiD~I~~~~~~ 199 (213)
....+++-..+.++++||++.|||++|....+.
T Consensus 186 s~Ale~~ltg~~~~AqeA~~~GlVn~Vvp~~~~ 218 (290)
T KOG1680|consen 186 SRALEMILTGRRLGAQEAKKIGLVNKVVPSGDA 218 (290)
T ss_pred HHHHHHHHhcCcccHHHHHhCCceeEeecchhH
Confidence 444556666788999999999999999987763
No 113
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=98.49 E-value=2.8e-06 Score=82.35 Aligned_cols=148 Identities=17% Similarity=0.208 Sum_probs=98.1
Q ss_pred cEEEEccc-----cCcchHHHHHHHHHhhccCCCCCceEEEEe----CCCCChhH------------------HHHHHHH
Q 028125 32 RVIFIGQN-----IDEEFSNQILATMLYLDSVDDSKRVYMYIN----GPGGDVTP------------------TLAIYDT 84 (213)
Q Consensus 32 ~iI~i~G~-----I~~~~~~~l~~~l~~l~~~~~~~~I~l~IN----SpGG~v~~------------------~~~I~~~ 84 (213)
.+|+|+-+ ++.++...+.+.+..++.++..+.|+|.=+ |-|+++.. ...+++.
T Consensus 18 ~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (715)
T PRK11730 18 AELVFDAPGSVNKLDRATLASLGEALDALEAQSDLKGLLLTSAKDAFIVGADITEFLSLFAAPEEELSQWLHFANSIFNR 97 (715)
T ss_pred EEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCcEEEEEECCCCccccCcCHHHHhhhccCCHHHHHHHHHHHHHHHHH
Confidence 45667653 566677888888887766655555555322 33444422 1234566
Q ss_pred HHhcCCCeEEEEccccchHHHHHHhcCCCCcEeeccCCeEEEeCCCccCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 028125 85 MQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQ 164 (213)
Q Consensus 85 i~~~~~~v~t~~~G~aaSaa~~I~~ag~~~~r~~~p~s~i~iH~p~~~~~G~~~d~~~~~~~l~~~~~~~~~~~a~~tg~ 164 (213)
|..+++||++.+.|.|..+|.-++++||. |++.+++.|.+-....+..-. ... ...+.+ . .
T Consensus 98 i~~~~kPvIAav~G~a~GgG~~LAlacD~--ria~~~a~f~~pe~~lGl~p~---~g~----~~~L~r--------l--v 158 (715)
T PRK11730 98 LEDLPVPTVAAINGYALGGGCECVLATDY--RVASPDARIGLPETKLGIMPG---FGG----TVRLPR--------L--I 158 (715)
T ss_pred HHcCCCCEEEEECCEeehHHHHHHHhCCE--EEEcCCCEEeCchhhcCCCCC---chH----HHHHHH--------h--c
Confidence 78889999999999999999999999998 999999998865544332110 000 011111 1 1
Q ss_pred CHHHHHHHhcCCceeCHHHHHHcCCceEecCCcc
Q 028125 165 PFEKITKDLSRIKRFGSQEALEYGLIDRIIRPPR 198 (213)
Q Consensus 165 ~~~~i~~~~~~~~~~sa~EA~~~GLiD~I~~~~~ 198 (213)
......+++-.++.++++||+++||||+|...++
T Consensus 159 G~~~A~~llltG~~~~A~eA~~~GLv~~vv~~~~ 192 (715)
T PRK11730 159 GADNALEWIAAGKDVRAEDALKVGAVDAVVAPEK 192 (715)
T ss_pred CHHHHHHHHHcCCcCCHHHHHHCCCCeEecCHHH
Confidence 2334445555567899999999999999987655
No 114
>PRK05617 3-hydroxyisobutyryl-CoA hydrolase; Provisional
Probab=98.49 E-value=1.2e-06 Score=77.96 Aligned_cols=144 Identities=19% Similarity=0.157 Sum_probs=94.5
Q ss_pred cEEEEccc-----cCcchHHHHHHHHHhhccCCCCCceEEEEeCCC-------CChhHH-------------------HH
Q 028125 32 RVIFIGQN-----IDEEFSNQILATMLYLDSVDDSKRVYMYINGPG-------GDVTPT-------------------LA 80 (213)
Q Consensus 32 ~iI~i~G~-----I~~~~~~~l~~~l~~l~~~~~~~~I~l~INSpG-------G~v~~~-------------------~~ 80 (213)
.+|+|+-+ ++.++...+.+.+..++.++..+.|+| .+.| +++..- ..
T Consensus 14 ~~itLnrP~~~Nal~~~m~~~L~~~l~~~~~d~~vrvvVl--tg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 91 (342)
T PRK05617 14 GVITLNRPKALNALSLEMIRAIDAALDAWEDDDAVAAVVI--EGAGERGFCAGGDIRALYEAARAGDPLAADRFFREEYR 91 (342)
T ss_pred EEEEECCCccccCCCHHHHHHHHHHHHHHhhCCCeEEEEE--EcCCCCceeCCcCHHHHHhhhccCCchhHHHHHHHHHH
Confidence 44666655 666677788888877765554444444 3433 443210 12
Q ss_pred HHHHHHhcCCCeEEEEccccchHHHHHHhcCCCCcEeeccCCeEEEeCCCccC---CCChHHHHHHHHHHHHHHHHHHHH
Q 028125 81 IYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAA---RGQADDIRNEADELLRVRDYIFKE 157 (213)
Q Consensus 81 I~~~i~~~~~~v~t~~~G~aaSaa~~I~~ag~~~~r~~~p~s~i~iH~p~~~~---~G~~~d~~~~~~~l~~~~~~~~~~ 157 (213)
++..|..+++||++.+.|.|..+|.-++++||- |++.++++|.+-....+. .|...- +.+
T Consensus 92 ~~~~i~~~~kPvIAaVnG~a~GgG~~LalacD~--ria~~~a~f~~pe~~lGl~P~~g~~~~-------L~r-------- 154 (342)
T PRK05617 92 LNALIARYPKPYIALMDGIVMGGGVGISAHGSH--RIVTERTKMAMPETGIGFFPDVGGTYF-------LSR-------- 154 (342)
T ss_pred HHHHHHhCCCCEEEEEcCEEEccHhHHhhhCCE--EEEcCCCEeeCCccccCcCCCccceeE-------ehh--------
Confidence 445677889999999999999999999999998 999999998765444331 111100 000
Q ss_pred HHHHhCCCHHHHHHHhcCCceeCHHHHHHcCCceEecCCcccc
Q 028125 158 LSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRIIRPPRIK 200 (213)
Q Consensus 158 ~a~~tg~~~~~i~~~~~~~~~~sa~EA~~~GLiD~I~~~~~~~ 200 (213)
.+. ....+++-.+..++++||+++||||++...++..
T Consensus 155 ----~~g--~~a~~llltG~~i~A~eA~~~GLv~~vv~~~~l~ 191 (342)
T PRK05617 155 ----APG--ALGTYLALTGARISAADALYAGLADHFVPSADLP 191 (342)
T ss_pred ----ccc--HHHHHHHHcCCCCCHHHHHHcCCcceecCHHHHH
Confidence 001 1123333346779999999999999999876543
No 115
>CHL00198 accA acetyl-CoA carboxylase carboxyltransferase alpha subunit; Provisional
Probab=98.48 E-value=1.7e-06 Score=75.91 Aligned_cols=132 Identities=17% Similarity=0.121 Sum_probs=89.9
Q ss_pred EEccccCcchHHHHHHHHHhhccCCCCCceEEEEeCCCCChh-------HHHHHHHHH---HhcCCCeEEEEccccchHH
Q 028125 35 FIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVT-------PTLAIYDTM---QSLKSPVGTHCVGFAYHLA 104 (213)
Q Consensus 35 ~i~G~I~~~~~~~l~~~l~~l~~~~~~~~I~l~INSpGG~v~-------~~~~I~~~i---~~~~~~v~t~~~G~aaSaa 104 (213)
...|-.+++..+.....+..++. -.-+|+-.++|||..+. .+..|...+ ....+|+++++.|.|.|+|
T Consensus 130 ~~~G~~~p~g~rKa~Rlm~lA~~--f~lPIItlvDTpGA~~G~~AE~~G~~~aiar~l~~~a~~~VP~IsVViGeggsGG 207 (322)
T CHL00198 130 RNFGMPSPGGYRKALRLMKHANK--FGLPILTFIDTPGAWAGVKAEKLGQGEAIAVNLREMFSFEVPIICTIIGEGGSGG 207 (322)
T ss_pred hcCCCCCHHHHHHHHHHHHHHHH--cCCCEEEEEeCCCcCcCHHHHHHhHHHHHHHHHHHHHcCCCCEEEEEeCcccHHH
Confidence 34566667666666665554332 35689999999998742 133455544 4556999999999999999
Q ss_pred HHHHhcCCCCcEeeccCCeEEEeCCCccCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhcCCceeCHHHH
Q 028125 105 GFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEA 184 (213)
Q Consensus 105 ~~I~~ag~~~~r~~~p~s~i~iH~p~~~~~G~~~d~~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~~~~~~sa~EA 184 (213)
++.++.+|. .+|.+++.+.+-.|.+.. . . + . .+.+...+... ..-+||++-
T Consensus 208 Alal~~aD~--V~m~e~a~~sVisPEg~a-----~--I----l---~------------~d~~~a~~aA~-~~~ita~dL 258 (322)
T CHL00198 208 ALGIGIGDS--IMMLEYAVYTVATPEACA-----A--I----L---W------------KDSKKSLDAAE-ALKITSEDL 258 (322)
T ss_pred HHhhhcCCe--EEEeCCeEEEecCHHHHH-----H--H----H---h------------cchhhHHHHHH-HcCCCHHHH
Confidence 999999988 999999998876665321 0 0 0 0 11122222222 233899999
Q ss_pred HHcCCceEecCCc
Q 028125 185 LEYGLIDRIIRPP 197 (213)
Q Consensus 185 ~~~GLiD~I~~~~ 197 (213)
+++|+||+|+...
T Consensus 259 ~~~giiD~ii~Ep 271 (322)
T CHL00198 259 KVLGIIDEIIPEP 271 (322)
T ss_pred HhCCCCeEeccCC
Confidence 9999999999754
No 116
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=98.48 E-value=3.4e-06 Score=81.81 Aligned_cols=147 Identities=15% Similarity=0.151 Sum_probs=98.8
Q ss_pred cEEEEccc-----cCcchHHHHHHHHHhhccCCCCCceEEEEe----CCCCChhH------------------HHHHHHH
Q 028125 32 RVIFIGQN-----IDEEFSNQILATMLYLDSVDDSKRVYMYIN----GPGGDVTP------------------TLAIYDT 84 (213)
Q Consensus 32 ~iI~i~G~-----I~~~~~~~l~~~l~~l~~~~~~~~I~l~IN----SpGG~v~~------------------~~~I~~~ 84 (213)
.+|.|+-+ ++.++...+.+.+..++.+++.+.|+|.=+ |-|+++.. ...+++.
T Consensus 18 a~Itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (714)
T TIGR02437 18 AELKFDAPGSVNKFDRATLASLDQALDAIKAQSSLKGVILTSGKDAFIVGADITEFLGLFALPDAELIQWLLFANSIFNK 97 (714)
T ss_pred EEEEECCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCccccCcCHHHHhhcccCCHHHHHHHHHHHHHHHHH
Confidence 45667654 566677888888888876666665555322 23344321 2346678
Q ss_pred HHhcCCCeEEEEccccchHHHHHHhcCCCCcEeeccCCeEEEeCCCccCC-CChHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 028125 85 MQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAAR-GQADDIRNEADELLRVRDYIFKELSRKTG 163 (213)
Q Consensus 85 i~~~~~~v~t~~~G~aaSaa~~I~~ag~~~~r~~~p~s~i~iH~p~~~~~-G~~~d~~~~~~~l~~~~~~~~~~~a~~tg 163 (213)
|..+++||++.+.|.|..+|.-++++||. |++.+++.|.+-....+.. |--. ..++-+. .
T Consensus 98 i~~~pkPvIAai~G~alGGGleLalacD~--ria~~~a~fglPEv~lGl~Pg~Gg--------t~rL~rl--------i- 158 (714)
T TIGR02437 98 LEDLPVPTVAAINGIALGGGCECVLATDF--RIADDTAKIGLPETKLGIMPGFGG--------TVRLPRV--------I- 158 (714)
T ss_pred HHhCCCCEEEEECCeeecHHHHHHHhCCE--EEEeCCCEEecchhhcCCCCCccH--------HHHHHHH--------h-
Confidence 88899999999999999999999999998 9999999998755443321 1000 0111111 1
Q ss_pred CCHHHHHHHhcCCceeCHHHHHHcCCceEecCCcc
Q 028125 164 QPFEKITKDLSRIKRFGSQEALEYGLIDRIIRPPR 198 (213)
Q Consensus 164 ~~~~~i~~~~~~~~~~sa~EA~~~GLiD~I~~~~~ 198 (213)
......+++-.+..++++||+++||||++...++
T Consensus 159 -G~~~A~~llltG~~~~A~eA~~~GLvd~vv~~~~ 192 (714)
T TIGR02437 159 -GADNALEWIASGKENRAEDALKVGAVDAVVTADK 192 (714)
T ss_pred -CHHHHHHHHHcCCcCCHHHHHHCCCCcEeeChhH
Confidence 2223344444567799999999999999987554
No 117
>PLN02874 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=98.48 E-value=2.7e-06 Score=76.75 Aligned_cols=150 Identities=14% Similarity=0.070 Sum_probs=96.4
Q ss_pred CcEEEEccc-----cCcchHHHHHHHHHhhccCCCCCceEEEEe----CCCCChhHH----------H-------HHHHH
Q 028125 31 ERVIFIGQN-----IDEEFSNQILATMLYLDSVDDSKRVYMYIN----GPGGDVTPT----------L-------AIYDT 84 (213)
Q Consensus 31 ~~iI~i~G~-----I~~~~~~~l~~~l~~l~~~~~~~~I~l~IN----SpGG~v~~~----------~-------~I~~~ 84 (213)
..+|+|+-+ ++.++...+.+.+..++.++.++.|+|.=+ |-||++..- . .+...
T Consensus 21 v~~ItLnrP~~~Nal~~~m~~eL~~al~~~~~d~~vrvvVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~l~~~ 100 (379)
T PLN02874 21 VRVITLNRPRQLNVISLSVVSLLAEFLEQWEKDDSVELIIIKGAGRAFSAGGDLKMFYDGRESDDSCLEVVYRMYWLCYH 100 (379)
T ss_pred EEEEEECCCccccCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCCccCccCHHHHHhhcccchHHHHHHHHHHHHHHH
Confidence 356778776 666777888888887776655555544211 234554321 0 11235
Q ss_pred HHhcCCCeEEEEccccchHHHHHHhcCCCCcEeeccCCeEEEeCCCccCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 028125 85 MQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQ 164 (213)
Q Consensus 85 i~~~~~~v~t~~~G~aaSaa~~I~~ag~~~~r~~~p~s~i~iH~p~~~~~G~~~d~~~~~~~l~~~~~~~~~~~a~~tg~ 164 (213)
|..+++||++.+.|.|..+|.-++++||. |++.+++.|.+-....+..- +.... -.+.++ ...
T Consensus 101 i~~~~kPvIAaV~G~a~GgG~~LalacD~--ria~~~a~f~~pe~~iGl~p---~~g~~-~~L~rl----~g~------- 163 (379)
T PLN02874 101 IHTYKKTQVALVHGLVMGGGAGLMVPMKF--RVVTEKTVFATPEASVGFHT---DCGFS-YILSRL----PGH------- 163 (379)
T ss_pred HHhCCCCEEEEecCeEEecHHHHHHhCCe--EEEeCCeEEeccccccCcCC---ChhHH-HHHHhh----hHH-------
Confidence 77789999999999999999999999998 99999999876554443211 11100 001111 110
Q ss_pred CHHHHHHHhcCCceeCHHHHHHcCCceEecCCcccc
Q 028125 165 PFEKITKDLSRIKRFGSQEALEYGLIDRIIRPPRIK 200 (213)
Q Consensus 165 ~~~~i~~~~~~~~~~sa~EA~~~GLiD~I~~~~~~~ 200 (213)
...+++-.+..++++||+++||||++...+++.
T Consensus 164 ---~a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~ 196 (379)
T PLN02874 164 ---LGEYLALTGARLNGKEMVACGLATHFVPSEKLP 196 (379)
T ss_pred ---HHHHHHHcCCcccHHHHHHcCCccEEeCHHHHH
Confidence 112233345779999999999999999876653
No 118
>TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH.
Probab=98.48 E-value=1.6e-06 Score=81.40 Aligned_cols=143 Identities=13% Similarity=0.070 Sum_probs=89.9
Q ss_pred cCcchHHHHHHHHHhhc-cCCCCCceEEEEe-----CCCCChhHH-------------------HHHHHHHHhcCCCeEE
Q 028125 40 IDEEFSNQILATMLYLD-SVDDSKRVYMYIN-----GPGGDVTPT-------------------LAIYDTMQSLKSPVGT 94 (213)
Q Consensus 40 I~~~~~~~l~~~l~~l~-~~~~~~~I~l~IN-----SpGG~v~~~-------------------~~I~~~i~~~~~~v~t 94 (213)
++.++.+.+.+.+..++ .++..+.|+|.-. |.|+++... ..+.+.|+.+++||++
T Consensus 45 l~~~~l~eL~~al~~~~~~d~~vRvVVLtg~~Gk~FcaG~DL~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~pkPvIA 124 (546)
T TIGR03222 45 YDLGVDIELHDAVQRIRFEHPEVRTVVMTSGKDRVFCSGANIFMLGLSTHAWKVNFCKFTNETRNGIEDSSRHSGLKFLA 124 (546)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCeeEEEEecCCCCCCcCCcCHHHHhccccchhhhHHHHHHHHHHHHHHHHHhCCCCEEE
Confidence 45556677888888776 4455555555432 456665431 1244566788999999
Q ss_pred EEccccchHHHHHHhcCCCCcEeeccC--CeEEEeCCC-ccCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHH
Q 028125 95 HCVGFAYHLAGFLLAGGEKGNRSAMPL--SRIALDSPA-GAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITK 171 (213)
Q Consensus 95 ~~~G~aaSaa~~I~~ag~~~~r~~~p~--s~i~iH~p~-~~~~G~~~d~~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~ 171 (213)
.+.|.|..+|.-++++||- |++.++ ++|.+-... .+.. ..... +..+ ............+
T Consensus 125 AVnG~a~GGG~~LALacD~--rvAs~~a~a~f~~pEv~~lGl~---P~~gg----~~~l--------~~~~~vg~~~A~~ 187 (546)
T TIGR03222 125 AVNGTCAGGGYELALACDE--IMLVDDRSSSVSLPEVPLLGVL---PGTGG----LTRV--------TDKRRVRRDHADI 187 (546)
T ss_pred EECCEeehHHHHHHHhCCE--EEEecCCCcEEEccchhccCcC---Cccch----hhhc--------cccchhCHHHHHH
Confidence 9999999999999999998 999986 566553321 2110 00000 0111 0001122334444
Q ss_pred HhcCCceeCHHHHHHcCCceEecCCccc
Q 028125 172 DLSRIKRFGSQEALEYGLIDRIIRPPRI 199 (213)
Q Consensus 172 ~~~~~~~~sa~EA~~~GLiD~I~~~~~~ 199 (213)
++-.++.++++||+++||||++...+++
T Consensus 188 llltG~~i~A~eA~~~GLV~~vv~~~~l 215 (546)
T TIGR03222 188 FCTIEEGVRGKRAKEWRLVDEVVKPSQF 215 (546)
T ss_pred HHHcCCCccHHHHHHcCCceEEeChHHH
Confidence 4444677999999999999999887543
No 119
>PLN02157 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=98.48 E-value=3.1e-06 Score=76.80 Aligned_cols=149 Identities=15% Similarity=0.070 Sum_probs=99.2
Q ss_pred CcEEEEccc-----cCcchHHHHHHHHHhhccCCCCCceEEEEe----CCCCChhHH------------H----H---HH
Q 028125 31 ERVIFIGQN-----IDEEFSNQILATMLYLDSVDDSKRVYMYIN----GPGGDVTPT------------L----A---IY 82 (213)
Q Consensus 31 ~~iI~i~G~-----I~~~~~~~l~~~l~~l~~~~~~~~I~l~IN----SpGG~v~~~------------~----~---I~ 82 (213)
..+|+|+-+ ++.++...+.+.|..++.++..+.|+|.=+ |-||++.+- . . +.
T Consensus 47 v~~ItLNRP~~lNALs~~m~~~L~~al~~~~~D~~vrvVVl~G~GkaFcAGgDl~~l~~~~~~~~~~~~~~~~~~~~~l~ 126 (401)
T PLN02157 47 SRTAILNRPPALNALTTHMGYRLQKLYKNWEEDPNIGFVMMKGSGRAFCAGGDIVSLYHLRKRGSPDAIREFFSSLYSFI 126 (401)
T ss_pred EEEEEECCCCccCCCCHHHHHHHHHHHHHHhhCCCCeEEEEECCCCCccCCcCHHHHHhhccccchHHHHHHHHHHHHHH
Confidence 456777776 677788888888888877666665555422 446766421 0 1 23
Q ss_pred HHHHhcCCCeEEEEccccchHHHHHHhcCCCCcEeeccCCeEEEeCCCccCCCChHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028125 83 DTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKT 162 (213)
Q Consensus 83 ~~i~~~~~~v~t~~~G~aaSaa~~I~~ag~~~~r~~~p~s~i~iH~p~~~~~G~~~d~~~~~~~l~~~~~~~~~~~a~~t 162 (213)
..|..+++|+++.+.|.|..+|.-|+++||. |++.+++.|.+-....+.. .+.... -.+.++ .
T Consensus 127 ~~i~~~pkPvIA~v~G~a~GGG~~Lal~cD~--rvate~a~fa~PE~~iGl~---Pd~G~s-~~L~rl-----------~ 189 (401)
T PLN02157 127 YLLGTYLKPHVAILNGVTMGGGTGVSIPGTF--RVATDRTIFATPETIIGFH---PDAGAS-FNLSHL-----------P 189 (401)
T ss_pred HHHHhCCCCEEEEEeCeEeehhHHHHHhCCE--EEEeCCCEEEChhhhcCCC---CCccHH-HHHHHh-----------h
Confidence 4477889999999999999999999999998 9999999987654443321 111100 011111 1
Q ss_pred CCCHHHHHHHhcCCceeCHHHHHHcCCceEecCCccc
Q 028125 163 GQPFEKITKDLSRIKRFGSQEALEYGLIDRIIRPPRI 199 (213)
Q Consensus 163 g~~~~~i~~~~~~~~~~sa~EA~~~GLiD~I~~~~~~ 199 (213)
|. ....++-.+..|+++||+++||+|++...++.
T Consensus 190 G~---~a~~L~LTG~~i~A~eA~~~GLv~~vVp~~~l 223 (401)
T PLN02157 190 GR---LGEYLGLTGLKLSGAEMLACGLATHYIRSEEI 223 (401)
T ss_pred hH---HHHHHHHcCCcCCHHHHHHcCCceEEeCHhHH
Confidence 11 11233334678999999999999999977653
No 120
>PLN02988 3-hydroxyisobutyryl-CoA hydrolase
Probab=98.47 E-value=3.7e-06 Score=75.92 Aligned_cols=150 Identities=17% Similarity=0.120 Sum_probs=97.4
Q ss_pred CcEEEEccc-----cCcchHHHHHHHHHhhccCCCCCceEEEEe----CCCCChhHH------------H-------HHH
Q 028125 31 ERVIFIGQN-----IDEEFSNQILATMLYLDSVDDSKRVYMYIN----GPGGDVTPT------------L-------AIY 82 (213)
Q Consensus 31 ~~iI~i~G~-----I~~~~~~~l~~~l~~l~~~~~~~~I~l~IN----SpGG~v~~~------------~-------~I~ 82 (213)
..+|+|+-+ ++.++...+.+.|..++.+++.+.|+|.=+ |-||++..- . .+.
T Consensus 19 i~~ItLnRP~~lNALs~~m~~~L~~al~~~~~d~~v~~VVl~G~G~~FcAGgDl~~l~~~~~~~~~~~~~~~f~~~~~l~ 98 (381)
T PLN02988 19 VRILTLNRPKQLNALSFHMISRLLQLFLAFEEDPSVKLVILKGHGRAFCAGGDVAAVVRDIEQGNWRLGANFFSDEYMLN 98 (381)
T ss_pred EEEEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCeeEEEEECCCCCcccCcCHHHHHhhhcccchhHHHHHHHHHHHHH
Confidence 356777766 666778889999988876665665555322 335665431 0 122
Q ss_pred HHHHhcCCCeEEEEccccchHHHHHHhcCCCCcEeeccCCeEEEeCCCccCCCChHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028125 83 DTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKT 162 (213)
Q Consensus 83 ~~i~~~~~~v~t~~~G~aaSaa~~I~~ag~~~~r~~~p~s~i~iH~p~~~~~G~~~d~~~~~~~l~~~~~~~~~~~a~~t 162 (213)
..|..+++|+++.+.|.|..+|.-|+++||. |++.++++|.+-....+.. .+... .-.+.++ ....
T Consensus 99 ~~i~~~pKPvIa~v~G~a~GGG~~Lal~~D~--rvate~a~f~mPE~~iGl~---Pd~G~-s~~L~rl----~G~~---- 164 (381)
T PLN02988 99 YVMATYSKAQVSILNGIVMGGGAGVSVHGRF--RIATENTVFAMPETALGLF---PDVGA-SYFLSRL----PGFF---- 164 (381)
T ss_pred HHHHHCCCCEEEEecCeEeehhhHHhhcCCe--EEEcCCcEEeChhhhcCcC---CCccH-HHHHHHH----HHHH----
Confidence 3677889999999999999999999999998 9999999887544333321 11100 0011111 1110
Q ss_pred CCCHHHHHHHhcCCceeCHHHHHHcCCceEecCCcccc
Q 028125 163 GQPFEKITKDLSRIKRFGSQEALEYGLIDRIIRPPRIK 200 (213)
Q Consensus 163 g~~~~~i~~~~~~~~~~sa~EA~~~GLiD~I~~~~~~~ 200 (213)
-..++--+..++++||+++||+|++....++.
T Consensus 165 ------~~~l~LTG~~i~a~eA~~~GLv~~vv~~~~l~ 196 (381)
T PLN02988 165 ------GEYVGLTGARLDGAEMLACGLATHFVPSTRLT 196 (381)
T ss_pred ------HHHHHHcCCCCCHHHHHHcCCceEecCHhHHH
Confidence 11233335679999999999999999876543
No 121
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=98.45 E-value=4e-06 Score=81.25 Aligned_cols=148 Identities=18% Similarity=0.179 Sum_probs=97.5
Q ss_pred cEEEEccc------cCcchHHHHHHHHHhhccCCCCCceEEEEe-----CCCCChhH----------------HHHHHHH
Q 028125 32 RVIFIGQN------IDEEFSNQILATMLYLDSVDDSKRVYMYIN-----GPGGDVTP----------------TLAIYDT 84 (213)
Q Consensus 32 ~iI~i~G~------I~~~~~~~l~~~l~~l~~~~~~~~I~l~IN-----SpGG~v~~----------------~~~I~~~ 84 (213)
.+|+|+-+ ++.++...+.+.+..++.+++.+.|+|.=. |-|+++.. ...+++.
T Consensus 17 a~itlnrp~~~~Nal~~~~~~~L~~~l~~~~~d~~vr~vVl~~~~~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (708)
T PRK11154 17 AVITIDVPGEKMNTLKAEFAEQVRAILKQLREDKELKGVVFISGKPDNFIAGADINMLAACKTAQEAEALARQGQQLFAE 96 (708)
T ss_pred EEEEECCCCCCCcCCCHHHHHHHHHHHHHHHhCCCceEEEEecCCCCCcccCcChHHhhccCCHHHHHHHHHHHHHHHHH
Confidence 45677644 556667788888887766554554444311 23444421 1235678
Q ss_pred HHhcCCCeEEEEccccchHHHHHHhcCCCCcEeeccCC--eEEEeCCCccCC-CChHHHHHHHHHHHHHHHHHHHHHHHH
Q 028125 85 MQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLS--RIALDSPAGAAR-GQADDIRNEADELLRVRDYIFKELSRK 161 (213)
Q Consensus 85 i~~~~~~v~t~~~G~aaSaa~~I~~ag~~~~r~~~p~s--~i~iH~p~~~~~-G~~~d~~~~~~~l~~~~~~~~~~~a~~ 161 (213)
|..+++||++.+.|.|..+|.-++++||. |++.+++ .|.+.....+.. +--. ...+.+ .
T Consensus 97 i~~~~kPvIAaV~G~a~GgG~~LalacD~--ria~~~a~a~fg~pe~~lGl~p~~gg--------~~~L~r--------~ 158 (708)
T PRK11154 97 IEALPIPVVAAIHGACLGGGLELALACHY--RVCTDDPKTVLGLPEVQLGLLPGSGG--------TQRLPR--------L 158 (708)
T ss_pred HHhCCCCEEEEECCeeechHHHHHHhCCE--EEEeCCCCceEeCccccCCCCCCccH--------HhHHHh--------h
Confidence 88899999999999999999999999998 9999985 666555443321 1100 011111 1
Q ss_pred hCCCHHHHHHHhcCCceeCHHHHHHcCCceEecCCccc
Q 028125 162 TGQPFEKITKDLSRIKRFGSQEALEYGLIDRIIRPPRI 199 (213)
Q Consensus 162 tg~~~~~i~~~~~~~~~~sa~EA~~~GLiD~I~~~~~~ 199 (213)
.......+++-.+..++++||+++||||++...++.
T Consensus 159 --vG~~~A~~llltG~~i~a~eA~~~GLv~~vv~~~~l 194 (708)
T PRK11154 159 --IGVSTALDMILTGKQLRAKQALKLGLVDDVVPHSIL 194 (708)
T ss_pred --cCHHHHHHHHHhCCcCCHHHHHHCCCCcEecChHHH
Confidence 223444555555778999999999999999987653
No 122
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=98.44 E-value=3.9e-06 Score=80.10 Aligned_cols=136 Identities=20% Similarity=0.234 Sum_probs=91.5
Q ss_pred CcEEEEccccCcchHHHHHHHHHhhccCCCCCceEEEEeCCCCChh-------HHHHHHHHHH---hcCCCeEEEEcccc
Q 028125 31 ERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVT-------PTLAIYDTMQ---SLKSPVGTHCVGFA 100 (213)
Q Consensus 31 ~~iI~i~G~I~~~~~~~l~~~l~~l~~~~~~~~I~l~INSpGG~v~-------~~~~I~~~i~---~~~~~v~t~~~G~a 100 (213)
+++-+..|..+++.++.....+..++. -.-+|+-+|||||..+. .+..|...+. ...+|+++++.|.|
T Consensus 214 e~~~rnfG~~~peGyRKAlRlmkLAek--fgLPIVtLVDTpGA~pG~~AEe~Gq~~aIArnl~amasl~VP~ISVViGeg 291 (762)
T PLN03229 214 ENIMRNFGMPTPHGYRKALRMMYYADH--HGFPIVTFIDTPGAYADLKSEELGQGEAIAHNLRTMFGLKVPIVSIVIGEG 291 (762)
T ss_pred ccccccCCCCCHHHHHHHHHHHHHHHH--cCCCEEEEEECCCcCCCchhHHHhHHHHHHHHHHHHhCCCCCEEEEEeCCc
Confidence 344455666666666666665554332 25689999999998762 3445655555 45689999999999
Q ss_pred chHHHHHHhcCCCCcEeeccCCeEEEeCCCccCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhcCCceeC
Q 028125 101 YHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFG 180 (213)
Q Consensus 101 aSaa~~I~~ag~~~~r~~~p~s~i~iH~p~~~~~G~~~d~~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~~~~~~s 180 (213)
+|+|++.++.||. .+|.|++.+.+-.|.+.. .+. + + ......+..+. .-+|
T Consensus 292 gSGGAlA~g~aD~--VlMle~A~~sVisPEgaA------------sIL-w---------k-d~~~A~eAAe~----lkiT 342 (762)
T PLN03229 292 GSGGALAIGCANK--LLMLENAVFYVASPEACA------------AIL-W---------K-SAKAAPKAAEK----LRIT 342 (762)
T ss_pred chHHHHHhhcCCE--EEEecCCeEEecCHHHHH------------HHH-h---------c-CcccHHHHHHH----cCCC
Confidence 9999999999998 999999987665554310 000 0 0 00112223333 3389
Q ss_pred HHHHHHcCCceEecCCc
Q 028125 181 SQEALEYGLIDRIIRPP 197 (213)
Q Consensus 181 a~EA~~~GLiD~I~~~~ 197 (213)
|++-+++|+||+|+...
T Consensus 343 a~dL~~lGiiD~IIpEp 359 (762)
T PLN03229 343 AQELCRLQIADGIIPEP 359 (762)
T ss_pred HHHHHhCCCCeeeccCC
Confidence 99999999999999753
No 123
>PLN02851 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=98.42 E-value=6.2e-06 Score=74.99 Aligned_cols=149 Identities=13% Similarity=0.027 Sum_probs=97.6
Q ss_pred CcEEEEccc-----cCcchHHHHHHHHHhhccCCCCCceEEEEe----CCCCChhHH------------H-------HHH
Q 028125 31 ERVIFIGQN-----IDEEFSNQILATMLYLDSVDDSKRVYMYIN----GPGGDVTPT------------L-------AIY 82 (213)
Q Consensus 31 ~~iI~i~G~-----I~~~~~~~l~~~l~~l~~~~~~~~I~l~IN----SpGG~v~~~------------~-------~I~ 82 (213)
..+|+|+-+ ++.++...+.+.|..++.+++.+.|+|.=+ |-||++... . .+.
T Consensus 52 ~~~ItLNRP~~lNALs~~m~~eL~~al~~~~~D~~vrvVVL~G~GkaFcAGgDl~~l~~~~~~~~~~~~~~~f~~~~~l~ 131 (407)
T PLN02851 52 SRAAILNRPSSLNALTIPMVARLKRLYESWEENPDIGFVLMKGSGRAFCSGADVVSLYHLINEGNVEECKLFFENLYKFV 131 (407)
T ss_pred EEEEEECCCCcCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCccCCcCHHHHHhhccccchHHHHHHHHHHHHHH
Confidence 456777776 667788889999988877766665554422 335655321 1 122
Q ss_pred HHHHhcCCCeEEEEccccchHHHHHHhcCCCCcEeeccCCeEEEeCCCccCCCChHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028125 83 DTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKT 162 (213)
Q Consensus 83 ~~i~~~~~~v~t~~~G~aaSaa~~I~~ag~~~~r~~~p~s~i~iH~p~~~~~G~~~d~~~~~~~l~~~~~~~~~~~a~~t 162 (213)
..|..+++|+++.+.|.|+.+|.-|+++||. |++.+++.|.+-....+.. .++... -.+.++.
T Consensus 132 ~~i~~~pKPvIA~v~G~amGGG~gLal~~D~--rVate~a~famPE~~iGl~---PdvG~s-~~L~rl~----------- 194 (407)
T PLN02851 132 YLQGTYLKPNVAIMDGITMGCGAGISIPGMF--RVVTDKTVFAHPEVQMGFH---PDAGAS-YYLSRLP----------- 194 (407)
T ss_pred HHHHhCCCCEEEEEcCEEeeHHHHHHHhCCE--EEEeCCceEecchhccCCC---CCccHH-HHHHHhc-----------
Confidence 3456778999999999999999999999998 9999999987655443321 111100 0112111
Q ss_pred CCCHHHHHHHhcCCceeCHHHHHHcCCceEecCCccc
Q 028125 163 GQPFEKITKDLSRIKRFGSQEALEYGLIDRIIRPPRI 199 (213)
Q Consensus 163 g~~~~~i~~~~~~~~~~sa~EA~~~GLiD~I~~~~~~ 199 (213)
|.. -..++-.+..++++||+++||+|++..+.+.
T Consensus 195 g~~---g~~L~LTG~~i~a~eA~~~GLa~~~v~~~~l 228 (407)
T PLN02851 195 GYL---GEYLALTGQKLNGVEMIACGLATHYCLNARL 228 (407)
T ss_pred CHH---HHHHHHhCCcCCHHHHHHCCCceeecCHhhH
Confidence 110 1122223577999999999999999977654
No 124
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=98.30 E-value=1.2e-05 Score=78.25 Aligned_cols=143 Identities=17% Similarity=0.215 Sum_probs=92.9
Q ss_pred EEEEccc------cCcchHHHHHHHHHhhccCCCCCceEEEEeCC------CCChhH----------------HHHHHHH
Q 028125 33 VIFIGQN------IDEEFSNQILATMLYLDSVDDSKRVYMYINGP------GGDVTP----------------TLAIYDT 84 (213)
Q Consensus 33 iI~i~G~------I~~~~~~~l~~~l~~l~~~~~~~~I~l~INSp------GG~v~~----------------~~~I~~~ 84 (213)
+|+|+.+ ++.++...+.+.+..++.++..+.++| +.+. |+++.. ...+++.
T Consensus 25 ~itlnrP~~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVv-ltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~ 103 (737)
T TIGR02441 25 VVKIDSPNSKVNTLSKELFAEFKEVMNELWTNEAIKSAVL-ISGKPGSFVAGADIQMIAACKTAQEVTQLSQEGQEMFER 103 (737)
T ss_pred EEEEcCCCCCCCCCCHHHHHHHHHHHHHHhhCCCCEEEEE-EECCCCcceeCcCHHHHhccCChHHHHHHHHHHHHHHHH
Confidence 4566643 445566778888887766554543333 3333 344421 2356778
Q ss_pred HHhcCCCeEEEEccccchHHHHHHhcCCCCcEeeccCC--eEEEeCCCccCC-CChHHHHHHHHHHHHHHHHHHHHHHHH
Q 028125 85 MQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLS--RIALDSPAGAAR-GQADDIRNEADELLRVRDYIFKELSRK 161 (213)
Q Consensus 85 i~~~~~~v~t~~~G~aaSaa~~I~~ag~~~~r~~~p~s--~i~iH~p~~~~~-G~~~d~~~~~~~l~~~~~~~~~~~a~~ 161 (213)
|..+++||++.+.|.|..+|.-++++||. |++.+++ .|.+.....+.. |--. ...+- +.
T Consensus 104 i~~~~kPvIAav~G~a~GgG~eLALacD~--ria~~~a~a~fglpEv~lGl~Pg~Gg--------t~rLp--------rl 165 (737)
T TIGR02441 104 IEKSQKPIVAAISGSCLGGGLELALACHY--RIATKDRKTLLGLPEVMLGLLPGAGG--------TQRLP--------KL 165 (737)
T ss_pred HHhCCCCEEEEECCEeecHHHHHHHhCCE--EEEcCCCCCeEecchhhhCCCCCccH--------hhhHH--------Hh
Confidence 88999999999999999999999999998 9999985 566544433311 1000 01111 11
Q ss_pred hCCCHHHHHHHhcCCceeCHHHHHHcCCceEecCC
Q 028125 162 TGQPFEKITKDLSRIKRFGSQEALEYGLIDRIIRP 196 (213)
Q Consensus 162 tg~~~~~i~~~~~~~~~~sa~EA~~~GLiD~I~~~ 196 (213)
.| .....+++-.+..++++||+++||||+|...
T Consensus 166 iG--~~~A~~l~ltG~~i~a~eA~~~GLVd~vv~~ 198 (737)
T TIGR02441 166 TG--VPAALDMMLTGKKIRADRAKKMGIVDQLVDP 198 (737)
T ss_pred hC--HHHHHHHHHcCCcCCHHHHHHCCCCeEecCC
Confidence 12 2333445555788999999999999999876
No 125
>TIGR03134 malonate_gamma malonate decarboxylase, gamma subunit. Members of this protein family are the gamma subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase, while the gamma subunit appears either to mediate subunit interaction or to act as a co-decarboxylase with the beta subunit. The beta and gamma subunits exhibit some local sequence similarity.
Probab=98.27 E-value=1.6e-05 Score=67.36 Aligned_cols=132 Identities=13% Similarity=0.118 Sum_probs=84.4
Q ss_pred cCcchHHHHHHHHHhhccCCCCCceEEEEeCCCCCh----------hHHHHHHHHHHh---cCCCeEEEEccccchHHHH
Q 028125 40 IDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDV----------TPTLAIYDTMQS---LKSPVGTHCVGFAYHLAGF 106 (213)
Q Consensus 40 I~~~~~~~l~~~l~~l~~~~~~~~I~l~INSpGG~v----------~~~~~I~~~i~~---~~~~v~t~~~G~aaSaa~~ 106 (213)
++-..+.+....+.....++...+|+..+|+||-.+ ...-.+..++.. .+.|+++++.|.+.|+|++
T Consensus 45 ~g~~~~~k~A~~v~~~~d~~f~~PIv~lvDtpG~~~g~~aE~~G~~~a~A~l~~a~a~a~~~~vP~IsvI~g~a~ggg~l 124 (238)
T TIGR03134 45 VGLDEALALAQAVLDVIEADDKRPIVVLVDTPSQAYGRREELLGINQALAHLAKALALARLAGHPVIGLIYGKAISGAFL 124 (238)
T ss_pred CChHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhcCCCCEEEEEeCCccHHHHH
Confidence 443445555555554322234679999999999654 223333344444 4499999999999999988
Q ss_pred HHhc-CCCCcEeeccCCeEEEeCCCccCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhcC--CceeCHHH
Q 028125 107 LLAG-GEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSR--IKRFGSQE 183 (213)
Q Consensus 107 I~~a-g~~~~r~~~p~s~i~iH~p~~~~~G~~~d~~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~~--~~~~sa~E 183 (213)
.+.. +|. .++.|++.+.+-.|.... +-+.++.++..+.... ..-.+++.
T Consensus 125 amg~~ad~--v~Alp~A~i~vm~~e~aa--------------------------~I~~~~~~~~~e~a~~~~~~a~~~~~ 176 (238)
T TIGR03134 125 AHGLQADR--IIALPGAMVHVMDLESMA--------------------------RVTKRSVEELEALAKSSPVFAPGIEN 176 (238)
T ss_pred HHccCcCe--EEEcCCcEEEecCHHHHH--------------------------HHHccCHhHHHHHHHhhhhhccCHHH
Confidence 8863 666 999999988765543210 0011222333333221 23467889
Q ss_pred HHHcCCceEecCCccc
Q 028125 184 ALEYGLIDRIIRPPRI 199 (213)
Q Consensus 184 A~~~GLiD~I~~~~~~ 199 (213)
+.++|+||+|+++.+.
T Consensus 177 ~~~~G~vd~vi~~~~~ 192 (238)
T TIGR03134 177 FVKLGGVHALLDVADA 192 (238)
T ss_pred HHhCCCccEEeCCCCc
Confidence 9999999999997663
No 126
>TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH.
Probab=98.21 E-value=2.6e-05 Score=73.41 Aligned_cols=140 Identities=11% Similarity=0.021 Sum_probs=89.0
Q ss_pred cCcchHHHHHHHHHhhccC-CCCCceEEEEe-----CCCCChh-----------HH----HHHHHHHHhcCCCeEEEE-c
Q 028125 40 IDEEFSNQILATMLYLDSV-DDSKRVYMYIN-----GPGGDVT-----------PT----LAIYDTMQSLKSPVGTHC-V 97 (213)
Q Consensus 40 I~~~~~~~l~~~l~~l~~~-~~~~~I~l~IN-----SpGG~v~-----------~~----~~I~~~i~~~~~~v~t~~-~ 97 (213)
++.++...+.+.+..++.+ ++.+.|+|.=. |-|+++. .. ..++..|..+++||++.+ .
T Consensus 295 l~~~~~~~L~~a~~~~~~~d~~vr~vVl~g~G~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpviAav~~ 374 (546)
T TIGR03222 295 WPLKLARELDDAILHLRTNELDIGLWVFRTQGDAELVLAADALLEAHKDHWFVRETIGYLRRTLARLDVSSRSLFALIEP 374 (546)
T ss_pred CCHHHHHHHHHHHHHHhhCCCCeEEEEEEcCCCCceecCcCccccccccchhHHHHHHHHHHHHHHHHcCCCCEEEEECC
Confidence 4455667777777777643 33444433221 2233331 10 125667888999999999 8
Q ss_pred cccchHH-HHHHhcCCCCcEee-------ccCCeEEEeCCCccCC---CChHHHHHHHHHHHHHHHHHHHHHHHHh-CCC
Q 028125 98 GFAYHLA-GFLLAGGEKGNRSA-------MPLSRIALDSPAGAAR---GQADDIRNEADELLRVRDYIFKELSRKT-GQP 165 (213)
Q Consensus 98 G~aaSaa-~~I~~ag~~~~r~~-------~p~s~i~iH~p~~~~~---G~~~d~~~~~~~l~~~~~~~~~~~a~~t-g~~ 165 (213)
|.|..+| .-++++||- |++ .+++.|.+-....+.. |-.. .+ .+.. |.+
T Consensus 375 G~a~GgG~~eLalacD~--~ia~~~~~~~~~~a~f~~~e~~lGl~p~~gg~~----------~L--------~~~v~G~~ 434 (546)
T TIGR03222 375 GSCFAGTLAELAFAADR--SYMLAFPDNNDPEPAITLSELNFGLYPMVNGLS----------RL--------ATRFYAEP 434 (546)
T ss_pred CeEeHHHHHHHHHhCce--eeecCCCCCCCCCCEEeCCccccccCCCcCcHH----------HH--------HHHhcCch
Confidence 9999999 999999998 999 8999987665554321 1111 11 1222 333
Q ss_pred HHHHHHHhcCCceeCHHHHHHcCCceEecCCccc
Q 028125 166 FEKITKDLSRIKRFGSQEALEYGLIDRIIRPPRI 199 (213)
Q Consensus 166 ~~~i~~~~~~~~~~sa~EA~~~GLiD~I~~~~~~ 199 (213)
...-.+++-.+..|+++||+++|||+++...++.
T Consensus 435 ~a~~~~~~ltg~~i~A~eA~~~Glv~~vv~~~~l 468 (546)
T TIGR03222 435 APVAAVRDKIGQALDAEEAERLGLVTAAPDDIDW 468 (546)
T ss_pred hHHHHHHHHhCCCCCHHHHHHcCCcccccCchHH
Confidence 2222222223577999999999999999877653
No 127
>TIGR01117 mmdA methylmalonyl-CoA decarboxylase alpha subunit. This model describes methymalonyl-CoA decarboxylase aplha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane.
Probab=98.05 E-value=3.6e-05 Score=72.03 Aligned_cols=140 Identities=21% Similarity=0.231 Sum_probs=91.0
Q ss_pred cccCcchHHHHHHHHHhhccCCCCCceEEEEeCCCC----------ChhHHHHHHHHHHhcCCCeEEEEccccchHHHHH
Q 028125 38 QNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGG----------DVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFL 107 (213)
Q Consensus 38 G~I~~~~~~~l~~~l~~l~~~~~~~~I~l~INSpGG----------~v~~~~~I~~~i~~~~~~v~t~~~G~aaSaa~~I 107 (213)
|.++...+++....+..+++ ..-+|+..+||||- .+..+-.++.++.....|.++++.|.++++|++.
T Consensus 329 G~~~~~~~~K~~r~i~~a~~--~~lPlV~lvDs~G~~~g~~~E~~g~~~~~a~~~~a~~~~~vP~isvi~g~~~Gga~~a 406 (512)
T TIGR01117 329 GCLDIDSSDKIARFIRFCDA--FNIPIVTFVDVPGFLPGVNQEYGGIIRHGAKVLYAYSEATVPKVTIITRKAYGGAYLA 406 (512)
T ss_pred CCCCHHHHHHHHHHHHHHHH--cCCCEEEEEeCcCccccHHHHHHHHHHHHHHHHHHHHhCCCCEEEEEcCCCchHHHHH
Confidence 55666677777777765433 36699999999996 3455566677777778999999999999998777
Q ss_pred Hhc----CCCCcEeeccCCeEEEeCCCccCC-CChHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhcCCceeCHH
Q 028125 108 LAG----GEKGNRSAMPLSRIALDSPAGAAR-GQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQ 182 (213)
Q Consensus 108 ~~a----g~~~~r~~~p~s~i~iH~p~~~~~-G~~~d~~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~~~~~~sa~ 182 (213)
+++ +|. .++.|++.+.+-.|..... --.+++... +.-... -.+++.+... .+.++.
T Consensus 407 m~~~~~~~d~--~~a~p~a~~~v~~pe~a~~i~~~~~l~~~-~~~~~~--------------~~~~~~~~~~--~~~~~~ 467 (512)
T TIGR01117 407 MCSKHLGADQ--VYAWPTAEIAVMGPAGAANIIFRKDIKEA-KDPAAT--------------RKQKIAEYRE--EFANPY 467 (512)
T ss_pred hccccCCCCE--EEEcCCCeEeecCHHHHHHHHhhhhcccc-cCHHHH--------------HHHHHHHHHH--hhcCHH
Confidence 764 555 8999999998777754210 000111000 000000 0122222222 245888
Q ss_pred HHHHcCCceEecCCcc
Q 028125 183 EALEYGLIDRIIRPPR 198 (213)
Q Consensus 183 EA~~~GLiD~I~~~~~ 198 (213)
.+.+.|+||.|+.+.+
T Consensus 468 ~~a~~g~vD~VI~P~~ 483 (512)
T TIGR01117 468 KAAARGYVDDVIEPKQ 483 (512)
T ss_pred HHHhcCCCCeeEChHH
Confidence 9999999999998765
No 128
>PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional
Probab=97.90 E-value=0.0001 Score=69.56 Aligned_cols=141 Identities=13% Similarity=0.064 Sum_probs=87.1
Q ss_pred cCcchHHHHHHHHHhhcc-CCCCCceEEEEe-----CCCCChh-----------HH----HHHHHHHHhcCCCeEEEEc-
Q 028125 40 IDEEFSNQILATMLYLDS-VDDSKRVYMYIN-----GPGGDVT-----------PT----LAIYDTMQSLKSPVGTHCV- 97 (213)
Q Consensus 40 I~~~~~~~l~~~l~~l~~-~~~~~~I~l~IN-----SpGG~v~-----------~~----~~I~~~i~~~~~~v~t~~~- 97 (213)
++.++...+.+.+..++. +++.+.|+|.=. |-|+++. .. ..++..|..+++||++.+.
T Consensus 299 l~~~~~~eL~~al~~~~~~d~~vr~vVltg~G~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~~ 378 (550)
T PRK08184 299 WPLQMARELDDAILHLRTNELDIGTWVLKTEGDAAAVLAADATLLAHKDHWLVRETRGYLRRTLKRLDVTSRSLFALIEP 378 (550)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCeEEEEEEcCCCCcEEeCCChhhhcccchHHHHHHHHHHHHHHHHHHhCCCCEEEEECC
Confidence 455566777777777654 344444444321 2234421 00 1245567788899999997
Q ss_pred cccchHH-HHHHhcCCCCcEeec-------cCCeEEEeCCCccCC---CChHHHHHHHHHHHHHHHHHHHHHHHHhCCCH
Q 028125 98 GFAYHLA-GFLLAGGEKGNRSAM-------PLSRIALDSPAGAAR---GQADDIRNEADELLRVRDYIFKELSRKTGQPF 166 (213)
Q Consensus 98 G~aaSaa-~~I~~ag~~~~r~~~-------p~s~i~iH~p~~~~~---G~~~d~~~~~~~l~~~~~~~~~~~a~~tg~~~ 166 (213)
|.|..+| .-++++||. |++. +++.|.+-....+.. |-.. .+-+++ -|...
T Consensus 379 G~a~GgG~~eLalacD~--~ia~~~~~~~~~~a~f~~pe~~~Gl~p~~gg~~----------~L~r~~-------vG~~~ 439 (550)
T PRK08184 379 GSCFAGTLAELALAADR--SYMLALPDDNDPAPAITLSALNFGLYPMVNGLS----------RLARRF-------YGEPD 439 (550)
T ss_pred CceehhHHHHHHHHCCh--hhhcCCCCCCCCCCEEECccccccCCCCCCcHH----------HhHHHh-------cChHH
Confidence 9999999 999999998 9999 999988665544321 1111 111110 12221
Q ss_pred HHHHHHhcCCceeCHHHHHHcCCceEecCCccc
Q 028125 167 EKITKDLSRIKRFGSQEALEYGLIDRIIRPPRI 199 (213)
Q Consensus 167 ~~i~~~~~~~~~~sa~EA~~~GLiD~I~~~~~~ 199 (213)
..-..++-.+..++++||+++|||+++...++.
T Consensus 440 A~~~~l~~tg~~i~A~eA~~~GLv~~vv~~~~l 472 (550)
T PRK08184 440 PLAAVRAKIGQPLDADAAEELGLVTAAPDDIDW 472 (550)
T ss_pred HHHHHHHHhCCcCCHHHHHHcCCcccccChHHH
Confidence 111111123577999999999999999887654
No 129
>COG0825 AccA Acetyl-CoA carboxylase alpha subunit [Lipid metabolism]
Probab=97.79 E-value=0.00012 Score=63.05 Aligned_cols=108 Identities=19% Similarity=0.281 Sum_probs=77.8
Q ss_pred CCceEEEEeCCCCCh-------hHHHHHHHHHHh---cCCCeEEEEccccchHHHHHHhcCCCCcEeeccCCeEEEeCCC
Q 028125 61 SKRVYMYINGPGGDV-------TPTLAIYDTMQS---LKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPA 130 (213)
Q Consensus 61 ~~~I~l~INSpGG~v-------~~~~~I~~~i~~---~~~~v~t~~~G~aaSaa~~I~~ag~~~~r~~~p~s~i~iH~p~ 130 (213)
.-+|..+|++||-.. -.+.+|...|.. +++|+++++.|...|+|++-...||+ .+|..||++.+-.|.
T Consensus 150 ~lPiitfIDT~GAypG~~AEErGQ~eAIA~nL~em~~LkvPiI~iVIGEGgSGGALAi~vad~--V~mle~s~ySVisPE 227 (317)
T COG0825 150 GLPIITFIDTPGAYPGIGAEERGQSEAIARNLREMARLKVPIISIVIGEGGSGGALAIGVADR--VLMLENSTYSVISPE 227 (317)
T ss_pred CCCEEEEecCCCCCCCcchhhcccHHHHHHHHHHHhCCCCCEEEEEecCCCchhhHHhhHHHH--HHHHHhceeeecChh
Confidence 569999999999543 345566655554 56899999999999999999999998 899999999877776
Q ss_pred ccCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhcCCceeCHHHHHHcCCceEecCCc
Q 028125 131 GAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRIIRPP 197 (213)
Q Consensus 131 ~~~~G~~~d~~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~~~~~~sa~EA~~~GLiD~I~~~~ 197 (213)
+-.. ..|+.-.+ .++..+.|. +|+++-+++||||.|+...
T Consensus 228 G~As-------ILWkD~~k----------------a~eAAe~mk----ita~dLk~lgiID~II~Ep 267 (317)
T COG0825 228 GCAS-------ILWKDASK----------------AKEAAEAMK----ITAHDLKELGIIDGIIPEP 267 (317)
T ss_pred hhhh-------hhhcChhh----------------hHHHHHHcC----CCHHHHHhCCCcceeccCC
Confidence 4210 01111110 122233333 7899999999999998753
No 130
>KOG1681 consensus Enoyl-CoA isomerase [Lipid transport and metabolism]
Probab=97.65 E-value=8.8e-05 Score=62.14 Aligned_cols=103 Identities=17% Similarity=0.194 Sum_probs=76.1
Q ss_pred HHHHHHHHHhcCCCeEEEEccccchHHHHHHhcCCCCcEeeccCCeEEEeCCCccCCCChHHHHHHHHHHHHHHHHHHHH
Q 028125 78 TLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKE 157 (213)
Q Consensus 78 ~~~I~~~i~~~~~~v~t~~~G~aaSaa~~I~~ag~~~~r~~~p~s~i~iH~p~~~~~G~~~d~~~~~~~l~~~~~~~~~~ 157 (213)
...-+.+|..+++||++-+.|.|-.+|.=+..|||. ||+...+.|-+...-.+. +.|+. .++++.+.+
T Consensus 115 ~Q~~~t~ie~CpKPVIaavHg~CiGagvDLiTAcDI--RycsqDAffsvkEVDvgl---aADvG----TL~RlpkvV--- 182 (292)
T KOG1681|consen 115 YQDTFTAIERCPKPVIAAVHGACIGAGVDLITACDI--RYCSQDAFFSVKEVDVGL---AADVG----TLNRLPKVV--- 182 (292)
T ss_pred HHHHHHHHHhCChhHHHHHHhhhccccccceeecce--eeecccceeeeeeeeeeh---hhchh----hHhhhhHHh---
Confidence 345567888899999999999999999999999999 999999999887765532 23332 234443321
Q ss_pred HHHHhCCCHHHHHHHhcCCceeCHHHHHHcCCceEecCCcc
Q 028125 158 LSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRIIRPPR 198 (213)
Q Consensus 158 ~a~~tg~~~~~i~~~~~~~~~~sa~EA~~~GLiD~I~~~~~ 198 (213)
| +...+.++.-..+-|++.||++.||+.+|....+
T Consensus 183 -----G-n~s~~~elafTar~f~a~EAl~~GLvSrvf~dk~ 217 (292)
T KOG1681|consen 183 -----G-NQSLARELAFTARKFSADEALDSGLVSRVFPDKE 217 (292)
T ss_pred -----c-chHHHHHHHhhhhhcchhhhhhcCcchhhcCCHH
Confidence 1 1233444444467899999999999999998765
No 131
>PF01039 Carboxyl_trans: Carboxyl transferase domain; InterPro: IPR000022 Members in this domain include biotin dependent carboxylases [, ]. The carboxyl transferase domain carries out the following reaction; transcarboxylation from biotin to an acceptor molecule. There are two recognised types of carboxyl transferase. One of them uses acyl-CoA and the other uses 2-oxo acid as the acceptor molecule of carbon dioxide. All of the members in this family utilise acyl-CoA as the acceptor molecule.; GO: 0016874 ligase activity; PDB: 2F9Y_B 1XO6_B 1XNV_B 3MFM_C 3IBB_A 1XNW_F 3IAV_B 1XNY_A 3IB9_A 3U9S_F ....
Probab=97.62 E-value=8.3e-05 Score=69.32 Aligned_cols=147 Identities=22% Similarity=0.222 Sum_probs=88.9
Q ss_pred cccCcchHHHHHHHHHhhccCCCCCceEEEEeCCC----------CChhHHHHHHHHHHhcCCCeEEEEccccchHHHHH
Q 028125 38 QNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPG----------GDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFL 107 (213)
Q Consensus 38 G~I~~~~~~~l~~~l~~l~~~~~~~~I~l~INSpG----------G~v~~~~~I~~~i~~~~~~v~t~~~G~aaSaa~~I 107 (213)
|.++.+.+.+....+..++.. .-+|+..+|+|| |.+..+-.+.+++..+..|+++++.+.+.++|++.
T Consensus 308 G~~~~~~a~K~arfi~lcd~~--~iPlv~l~dtpGf~~g~~~E~~g~~~~ga~~~~a~~~~~vP~itvi~~~~~Gga~~a 385 (493)
T PF01039_consen 308 GALDPDGARKAARFIRLCDAF--NIPLVTLVDTPGFMPGPEAERAGIIRAGARLLYALAEATVPKITVIVRKAYGGAYYA 385 (493)
T ss_dssp GEB-HHHHHHHHHHHHHHHHT--T--EEEEEEECEB--SHHHHHTTHHHHHHHHHHHHHHH-S-EEEEEEEEEEHHHHHH
T ss_pred ccCChHHHHHHHHHHHHHHhh--CCceEEEeecccccccchhhhcchHHHHHHHHHHHHcCCCCEEEEEeCCccCcchhh
Confidence 567777777777776655442 458999999999 55677888999999999999999999999998888
Q ss_pred HhcCCC--CcEeeccCCeEEEeCCCccCCCChHHHHHHHHHHHHHH-HHHHHHHHHHhCCCHHHHHHHhcCCceeCHHHH
Q 028125 108 LAGGEK--GNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVR-DYIFKELSRKTGQPFEKITKDLSRIKRFGSQEA 184 (213)
Q Consensus 108 ~~ag~~--~~r~~~p~s~i~iH~p~~~~~G~~~d~~~~~~~l~~~~-~~~~~~~a~~tg~~~~~i~~~~~~~~~~sa~EA 184 (213)
+++... ...++.|++.+.+..|.... .+. ..+++.... +. .+.-+. ..+.+.+..+ ...++..|
T Consensus 386 m~~~~~~~~~~~Awp~a~~~vm~~e~a~-----~i~-~~~~~~~~~~~~-~~~~~~----~~~~~~~~~~--~~~~~~~~ 452 (493)
T PF01039_consen 386 MCGRGYGPDFVFAWPTAEIGVMGPEGAA-----SIL-YRDELEAAEAEG-ADPEAQ----RAEKIAEYED--ELSSPYRA 452 (493)
T ss_dssp TTGGGGTTSEEEEETT-EEESS-HHHHH-----HHH-THHHHHHSCHCC-HSHHHH----HHHHHHHHHH--HHSSHHHH
T ss_pred hcccccchhhhhhhhcceeeecChhhhh-----eee-ehhhhhhhhccc-chhHHH----HHHHHHHHHH--hcCCHHHH
Confidence 876611 12789999988766654321 000 000010000 00 000000 1122222222 23578999
Q ss_pred HHcCCceEecCCccc
Q 028125 185 LEYGLIDRIIRPPRI 199 (213)
Q Consensus 185 ~~~GLiD~I~~~~~~ 199 (213)
.+.+++|.|+++.+.
T Consensus 453 a~~~~~D~ii~p~~t 467 (493)
T PF01039_consen 453 ASRGYVDDIIDPAET 467 (493)
T ss_dssp HHTTSSSEESSGGGH
T ss_pred HhcCCCCCccCHHHH
Confidence 999999999998764
No 132
>PLN02820 3-methylcrotonyl-CoA carboxylase, beta chain
Probab=97.59 E-value=0.00056 Score=64.77 Aligned_cols=151 Identities=13% Similarity=-0.005 Sum_probs=89.0
Q ss_pred cccCcchHHHHHHHHHhhccCCCCCceEEEEeCCCCC----------hhHHHHHHHHHHhcCCCeEEEEccccchHHHHH
Q 028125 38 QNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGD----------VTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFL 107 (213)
Q Consensus 38 G~I~~~~~~~l~~~l~~l~~~~~~~~I~l~INSpGG~----------v~~~~~I~~~i~~~~~~v~t~~~G~aaSaa~~I 107 (213)
|.++.+.+++....+...+. -.-+|+..+|+||-. +..+-.+..++....+|+++++.|.|+++|++.
T Consensus 380 g~l~~~~a~Kaarfi~lc~~--~~iPlv~l~D~pGf~~G~~~E~~G~~~~~a~l~~A~a~~~VP~isvi~g~a~G~g~~a 457 (569)
T PLN02820 380 GILFTESALKGAHFIELCAQ--RGIPLLFLQNITGFMVGSRSEASGIAKAGAKMVMAVACAKVPKITIIVGGSFGAGNYG 457 (569)
T ss_pred CccCHHHHHHHHHHHHHHHh--cCCCEEEEEECCCCCCCHHHHHhhHHHHHHHHHHHHHhCCCCEEEEEECCcchHHHHH
Confidence 55776677776666654433 356899999999954 445556777777888999999999999999998
Q ss_pred HhcC--CCCcEeeccCCeEEEeCCCccCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhcCCceeCHHHHH
Q 028125 108 LAGG--EKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEAL 185 (213)
Q Consensus 108 ~~ag--~~~~r~~~p~s~i~iH~p~~~~~G~~~d~~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~~~~~~sa~EA~ 185 (213)
++.. .....++.|++.+.+-.|.... .+. ..+++.+..+.-...-.+....-.+++.+..+ ...++-.|-
T Consensus 458 M~g~~~~~d~~~awp~A~i~vmg~e~aa-----~il-~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~p~~aa 529 (569)
T PLN02820 458 MCGRAYSPNFLFMWPNARIGVMGGAQAA-----GVL-AQIERENKKRQGIQWSKEEEEAFKAKTVEAYE--REANPYYST 529 (569)
T ss_pred hcCcCCCCCEEEECCCCeEEecCHHHHH-----HHH-HHHHhhhhhhccccCCccHHHHHHHHHHHHHH--HhCCHHHHH
Confidence 8733 1123888899888765554321 000 00111110000000000000000122222222 245788899
Q ss_pred HcCCceEecCCcc
Q 028125 186 EYGLIDRIIRPPR 198 (213)
Q Consensus 186 ~~GLiD~I~~~~~ 198 (213)
+.|++|.|+++.+
T Consensus 530 ~~~~vD~VIdP~d 542 (569)
T PLN02820 530 ARLWDDGVIDPAD 542 (569)
T ss_pred HcCCcCcccCHHH
Confidence 9999999998755
No 133
>PRK05654 acetyl-CoA carboxylase subunit beta; Validated
Probab=97.44 E-value=0.0016 Score=56.84 Aligned_cols=125 Identities=14% Similarity=0.116 Sum_probs=81.7
Q ss_pred ccCcchHHHHHHHHHhhccCCCCCceEEEEeCCCCChhHHHH-------HHHH---HHhcCCCeEEEEccccchHHHHHH
Q 028125 39 NIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLA-------IYDT---MQSLKSPVGTHCVGFAYHLAGFLL 108 (213)
Q Consensus 39 ~I~~~~~~~l~~~l~~l~~~~~~~~I~l~INSpGG~v~~~~~-------I~~~---i~~~~~~v~t~~~G~aaSaa~~I~ 108 (213)
.++....+.+...+...... .-++++..+|+|....++.. +..+ +.....|.++++.|.|+.++++.+
T Consensus 136 S~g~~~~eKi~r~~e~A~~~--~lPlV~l~dsgGarmqEgi~sL~~~ak~~~a~~~~~~a~vP~IsVv~gpt~GG~aas~ 213 (292)
T PRK05654 136 SMGSVVGEKIVRAVERAIEE--KCPLVIFSASGGARMQEGLLSLMQMAKTSAALKRLSEAGLPYISVLTDPTTGGVSASF 213 (292)
T ss_pred CccHHHHHHHHHHHHHHHHc--CCCEEEEEcCCCcchhhhhhHHHhHHHHHHHHHHHHcCCCCEEEEEeCCCchHHHHHH
Confidence 34444567777776654332 45888899999988766552 2223 333458999999999998877765
Q ss_pred hc-CCCCcEeeccCCeEEEeCCCccCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhcCCceeCHHHHHHc
Q 028125 109 AG-GEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEY 187 (213)
Q Consensus 109 ~a-g~~~~r~~~p~s~i~iH~p~~~~~G~~~d~~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~~~~~~sa~EA~~~ 187 (213)
.. +|- +++.|++.+++-.|... . +.++ +++.+ -+-+++-+.+.
T Consensus 214 a~~~D~--iia~p~A~ig~aGprvi---------------e-----------~~~~---e~lpe-----~~~~ae~~~~~ 257 (292)
T PRK05654 214 AMLGDI--IIAEPKALIGFAGPRVI---------------E-----------QTVR---EKLPE-----GFQRAEFLLEH 257 (292)
T ss_pred HHcCCE--EEEecCcEEEecCHHHH---------------H-----------hhhh---hhhhh-----hhcCHHHHHhC
Confidence 54 776 89999999987666210 0 0011 11111 13367777889
Q ss_pred CCceEecCCccccc
Q 028125 188 GLIDRIIRPPRIKE 201 (213)
Q Consensus 188 GLiD~I~~~~~~~~ 201 (213)
|+||.|+.+.+..+
T Consensus 258 G~vD~Vv~~~e~r~ 271 (292)
T PRK05654 258 GAIDMIVHRRELRD 271 (292)
T ss_pred CCCcEEECHHHHHH
Confidence 99999998877553
No 134
>TIGR00515 accD acetyl-CoA carboxylase, carboxyl transferase, beta subunit. The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the beta chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.
Probab=97.38 E-value=0.0019 Score=56.14 Aligned_cols=124 Identities=17% Similarity=0.161 Sum_probs=83.2
Q ss_pred cCcchHHHHHHHHHhhccCCCCCceEEEEeCCCCChhHHHHHH-------HH---HHhcCCCeEEEEccccchHHHHHHh
Q 028125 40 IDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIY-------DT---MQSLKSPVGTHCVGFAYHLAGFLLA 109 (213)
Q Consensus 40 I~~~~~~~l~~~l~~l~~~~~~~~I~l~INSpGG~v~~~~~I~-------~~---i~~~~~~v~t~~~G~aaSaa~~I~~ 109 (213)
++....+.+...+..+.. ..-++++..+|+|..+.++.... .+ +.....|.++++.|.|+.++++.+.
T Consensus 136 mg~~~geKi~r~~e~A~~--~~lPlV~l~dSgGaRmqEg~~sL~~~ak~~~~~~~~~~~~vP~IsVv~gpt~GG~aas~a 213 (285)
T TIGR00515 136 MGSVVGEKFVRAIEKALE--DNCPLIIFSASGGARMQEALLSLMQMAKTSAALAKMSERGLPYISVLTDPTTGGVSASFA 213 (285)
T ss_pred ccHHHHHHHHHHHHHHHH--cCCCEEEEEcCCCcccccchhHHHhHHHHHHHHHHHHcCCCCEEEEEeCCcchHHHHHHH
Confidence 333456777776665433 35589999999998876665222 12 2333589999999999988877764
Q ss_pred -cCCCCcEeeccCCeEEEeCCCccCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhcCCceeCHHHHHHcC
Q 028125 110 -GGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYG 188 (213)
Q Consensus 110 -ag~~~~r~~~p~s~i~iH~p~~~~~G~~~d~~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~~~~~~sa~EA~~~G 188 (213)
.+|- +++.|++.+++-.|.. +.+.++ +.+. +-+-+++-+.+.|
T Consensus 214 ~~~D~--iia~p~A~ig~aGprV--------------------------ie~ti~-------e~lp-e~~q~ae~~~~~G 257 (285)
T TIGR00515 214 MLGDL--NIAEPKALIGFAGPRV--------------------------IEQTVR-------EKLP-EGFQTSEFLLEHG 257 (285)
T ss_pred hCCCE--EEEECCeEEEcCCHHH--------------------------HHHHhc-------Cccc-hhcCCHHHHHhCC
Confidence 7877 9999999998765531 111111 1111 2244778788899
Q ss_pred CceEecCCccccc
Q 028125 189 LIDRIIRPPRIKE 201 (213)
Q Consensus 189 LiD~I~~~~~~~~ 201 (213)
+||.|+.+.+.++
T Consensus 258 ~vD~iv~~~~~r~ 270 (285)
T TIGR00515 258 AIDMIVHRPEMKK 270 (285)
T ss_pred CCcEEECcHHHHH
Confidence 9999999877654
No 135
>KOG1679 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=97.36 E-value=0.00046 Score=57.43 Aligned_cols=129 Identities=17% Similarity=0.167 Sum_probs=91.3
Q ss_pred HHHHHHHHhhccCCCCCceEEEEeCCCCC--------------------hhHHHHHHHHHHhcCCCeEEEEccccchHHH
Q 028125 46 NQILATMLYLDSVDDSKRVYMYINGPGGD--------------------VTPTLAIYDTMQSLKSPVGTHCVGFAYHLAG 105 (213)
Q Consensus 46 ~~l~~~l~~l~~~~~~~~I~l~INSpGG~--------------------v~~~~~I~~~i~~~~~~v~t~~~G~aaSaa~ 105 (213)
+.+.+.+..+..+++.+.|.|+=-+||=- |..-..+++.|.+++.||++-++|.|..+|.
T Consensus 61 ~~l~~~l~~lk~D~~~RvvilrS~vpgvFCaGADLKER~~Ms~~Ev~~fV~~lR~~~~dIe~Lp~P~IAAidG~ALGGGL 140 (291)
T KOG1679|consen 61 KQLREVLDELKYDNKVRVVILRSLVPGVFCAGADLKERKTMSPSEVTRFVNGLRGLFNDIERLPQPVIAAIDGAALGGGL 140 (291)
T ss_pred HHHHHHHHHHhhCCceeEEEEecCCCceeecCcchHhhhcCCHHHHHHHHHHHHHHHHHHHhCCccceehhcchhcccch
Confidence 44555555666666666677766778721 3444567888899999999999999999999
Q ss_pred HHHhcCCCCcEeeccCCeEEEeCCCc----cCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhcCCceeCH
Q 028125 106 FLLAGGEKGNRSAMPLSRIALDSPAG----AARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGS 181 (213)
Q Consensus 106 ~I~~ag~~~~r~~~p~s~i~iH~p~~----~~~G~~~d~~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~~~~~~sa 181 (213)
=+++|||. |++..++.+++-.-.. +..|+- ++-+.+ ......++.-..+.|++
T Consensus 141 ElALACDi--Rva~s~akmGLvET~laiiPGaGGtQ-----------RLpR~v----------g~alaKELIftarvl~g 197 (291)
T KOG1679|consen 141 ELALACDI--RVAASSAKMGLVETKLAIIPGAGGTQ-----------RLPRIV----------GVALAKELIFTARVLNG 197 (291)
T ss_pred hhhhhccc--eehhhhccccccccceeeecCCCccc-----------hhHHHH----------hHHHHHhHhhhheeccc
Confidence 99999998 9999999987655432 233331 221111 12233445555788999
Q ss_pred HHHHHcCCceEecCCc
Q 028125 182 QEALEYGLIDRIIRPP 197 (213)
Q Consensus 182 ~EA~~~GLiD~I~~~~ 197 (213)
.||..+|||.++.+..
T Consensus 198 ~eA~~lGlVnhvv~qn 213 (291)
T KOG1679|consen 198 AEAAKLGLVNHVVEQN 213 (291)
T ss_pred hhHHhcchHHHHHhcC
Confidence 9999999999987654
No 136
>TIGR03133 malonate_beta malonate decarboxylase, beta subunit. Members of this protein family are the beta subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase.
Probab=97.17 E-value=0.0027 Score=54.95 Aligned_cols=86 Identities=13% Similarity=0.114 Sum_probs=63.6
Q ss_pred chHHHHHHHHHhhccCC---CCCceEEEEeCCCCChhHHH-------HHHHHHHhcC--CCeEEEEccc--cchHHHHHH
Q 028125 43 EFSNQILATMLYLDSVD---DSKRVYMYINGPGGDVTPTL-------AIYDTMQSLK--SPVGTHCVGF--AYHLAGFLL 108 (213)
Q Consensus 43 ~~~~~l~~~l~~l~~~~---~~~~I~l~INSpGG~v~~~~-------~I~~~i~~~~--~~v~t~~~G~--aaSaa~~I~ 108 (213)
-..+++...+..+..++ ..-++++.++|.|+.+.++. .++..+..++ .|+++++.|. |+.++++++
T Consensus 78 ~~g~Ki~r~~e~A~~~~~~~~~~PvV~l~dSgGaRlqEg~~~L~~~a~i~~~~~~ls~~vP~Isvv~Gp~gc~GG~a~~a 157 (274)
T TIGR03133 78 VHGAKIVGALRLAIEDNRKGQPTAVVLLLDTGGVRLQEANAGLIAIAEIMRAILDARAAVPVIGVIGGRVGCFGGMGIAA 157 (274)
T ss_pred HHHHHHHHHHHHHHhhhhccCCCCEEEEEcCCCcChhhhHHHHHHHHHHHHHHHHHhCCCCEEEEEeCCCCcchHHHHHH
Confidence 34567777666543311 23489999999999887644 3343333333 7999999999 789999999
Q ss_pred hcCCCCcEeeccCCeEEEeCCC
Q 028125 109 AGGEKGNRSAMPLSRIALDSPA 130 (213)
Q Consensus 109 ~ag~~~~r~~~p~s~i~iH~p~ 130 (213)
+.||. .+|.|++.+.+-.|.
T Consensus 158 ~l~D~--vim~~~a~i~~aGP~ 177 (274)
T TIGR03133 158 GLCSY--LIMTEEGRLGLSGPE 177 (274)
T ss_pred hcCCE--EEEeCCcEEeccCHH
Confidence 99998 999999999887774
No 137
>COG0447 MenB Dihydroxynaphthoic acid synthase [Coenzyme metabolism]
Probab=97.07 E-value=0.0023 Score=53.45 Aligned_cols=137 Identities=17% Similarity=0.218 Sum_probs=92.0
Q ss_pred CcchHHHHHHHHHhhccCCCCCceEEEEeCCCC-----------------Ch-------hHHHHHHHHHHhcCCCeEEEE
Q 028125 41 DEEFSNQILATMLYLDSVDDSKRVYMYINGPGG-----------------DV-------TPTLAIYDTMQSLKSPVGTHC 96 (213)
Q Consensus 41 ~~~~~~~l~~~l~~l~~~~~~~~I~l~INSpGG-----------------~v-------~~~~~I~~~i~~~~~~v~t~~ 96 (213)
.+.++..+++.+..++.+.+...|.|.=|+-|+ .+ ...+.+-..||.+++||++.|
T Consensus 44 rP~TV~Em~~Af~~Ar~d~~vGvi~lTG~~~G~~AFCsGGDQ~vRg~~~gY~~d~~~~rLnvLdlQrlIR~~PKpViA~V 123 (282)
T COG0447 44 RPKTVDEMIDAFADARDDPNVGVILLTGNGDGDKAFCSGGDQKVRGDSGGYVDDDGIPRLNVLDLQRLIRTMPKPVIAMV 123 (282)
T ss_pred CCccHHHHHHHHHhhhcCCCccEEEEecCCCCCeeeecCCCceecccCCCccCCccCcccchhhHHHHHHhCCcceEEEE
Confidence 345677888888877666656666665453332 22 223466678999999999999
Q ss_pred ccccchHHHHHHhcCCCCcEeeccCCeEEEeCCCccCC--CChHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhc
Q 028125 97 VGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAAR--GQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLS 174 (213)
Q Consensus 97 ~G~aaSaa~~I~~ag~~~~r~~~p~s~i~iH~p~~~~~--G~~~d~~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~ 174 (213)
.|.|..+|-.+-+-||- -++..|+.|.-..|..++. |--+ ..|.+ ++ |. ++.+++.-
T Consensus 124 ~G~AiGGGhvlhvvCDL--TiAa~nA~FgQTgp~VGSFD~G~Gs------~ylar-------~V----Gq--KkArEIwf 182 (282)
T COG0447 124 AGYAIGGGHVLHVVCDL--TIAADNAIFGQTGPKVGSFDGGYGS------SYLAR-------IV----GQ--KKAREIWF 182 (282)
T ss_pred eeEeccCccEEEEEeee--eeehhcchhcCCCCCcccccCcccH------HHHHH-------Hh----hh--hhhHHhhh
Confidence 99999999999999998 8899999998777775432 1111 01111 11 11 22233322
Q ss_pred CCceeCHHHHHHcCCceEecCCcc
Q 028125 175 RIKRFGSQEALEYGLIDRIIRPPR 198 (213)
Q Consensus 175 ~~~~~sa~EA~~~GLiD~I~~~~~ 198 (213)
=-+.++|+||++.|+|..|....+
T Consensus 183 LcR~Y~A~eal~MGlVN~Vvp~~~ 206 (282)
T COG0447 183 LCRQYDAEEALDMGLVNTVVPHAD 206 (282)
T ss_pred hhhhccHHHHHhcCceeeeccHHH
Confidence 235679999999999999886543
No 138
>PRK07189 malonate decarboxylase subunit beta; Reviewed
Probab=96.97 E-value=0.004 Score=54.53 Aligned_cols=85 Identities=14% Similarity=0.120 Sum_probs=62.5
Q ss_pred hHHHHHHHHHhhccCC---CCCceEEEEeCCCCChhHHH-------HHHHHHHhcC--CCeEEEEccc--cchHHHHHHh
Q 028125 44 FSNQILATMLYLDSVD---DSKRVYMYINGPGGDVTPTL-------AIYDTMQSLK--SPVGTHCVGF--AYHLAGFLLA 109 (213)
Q Consensus 44 ~~~~l~~~l~~l~~~~---~~~~I~l~INSpGG~v~~~~-------~I~~~i~~~~--~~v~t~~~G~--aaSaa~~I~~ 109 (213)
...++...++.+.+.. .--++++.++|.|+.+.++. .++..+..++ .|+++++.|. |+.++++.++
T Consensus 88 ~g~Ki~r~~e~A~~~~~~~~~~PvV~l~dSGGaRlqEg~~~L~~~a~i~~~~~~ls~~VP~I~vv~G~~gc~GG~a~~a~ 167 (301)
T PRK07189 88 HGAKLAGALELAAEDNRNGIPTAVLLLFETGGVRLQEANAGLAAIAEIMRAIVDLRAAVPVIGLIGGRVGCFGGMGIAAA 167 (301)
T ss_pred HHHHHHHHHHHHHHhCCCCCCCCEEEEecCCCcCccchHHHHHHHHHHHHHHHHHhCCCCEEEEEcCCCCCcHHHHHHHh
Confidence 4566666665433221 12689999999999876543 3444433333 7999999999 9999999999
Q ss_pred cCCCCcEeeccCCeEEEeCCC
Q 028125 110 GGEKGNRSAMPLSRIALDSPA 130 (213)
Q Consensus 110 ag~~~~r~~~p~s~i~iH~p~ 130 (213)
.||. .+|.+++.+++-.|.
T Consensus 168 l~D~--iIm~~~a~iglaGP~ 186 (301)
T PRK07189 168 LCSY--LIVSEEGRLGLSGPE 186 (301)
T ss_pred cCCE--EEEECCcEEeccCHH
Confidence 9998 999999999887774
No 139
>KOG1682 consensus Enoyl-CoA isomerase [Lipid transport and metabolism]
Probab=96.90 E-value=0.0025 Score=52.75 Aligned_cols=102 Identities=18% Similarity=0.200 Sum_probs=70.8
Q ss_pred HHHHHHHhcCCCeEEEEccccchHHHHHHhcCCCCcEeeccCCeEEEeCCCccCCCChHHHHHHHHHHHHHHHHHHHHHH
Q 028125 80 AIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELS 159 (213)
Q Consensus 80 ~I~~~i~~~~~~v~t~~~G~aaSaa~~I~~ag~~~~r~~~p~s~i~iH~p~~~~~G~~~d~~~~~~~l~~~~~~~~~~~a 159 (213)
.+.+.||++++||++-|.|.|+-+|+-+.++||- .++.++|.|..-....+..-+..-+. +.+
T Consensus 116 dvmn~Irn~pVPVia~VNG~AaAAGcQLVaSCD~--vVa~k~SkF~tPG~~vGlFCSTPGvA-----laR---------- 178 (287)
T KOG1682|consen 116 DVMNDIRNLPVPVIAKVNGYAAAAGCQLVASCDM--VVATKNSKFSTPGAGVGLFCSTPGVA-----LAR---------- 178 (287)
T ss_pred HHHHHHhcCCCceEEEecchhhhccceEEEeeeE--EEEecCccccCCCCceeeEecCcchh-----Hhh----------
Confidence 4568899999999999999999999999999997 88899998854332222111111110 111
Q ss_pred HHhCCCHHHHHHHhcCCceeCHHHHHHcCCceEecCCccccc
Q 028125 160 RKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRIIRPPRIKE 201 (213)
Q Consensus 160 ~~tg~~~~~i~~~~~~~~~~sa~EA~~~GLiD~I~~~~~~~~ 201 (213)
-.+.+....++-.+..+|+|||+--||+.++...++++.
T Consensus 179 ---avpRkva~~ML~Tg~Pi~~eeAl~sGlvskvVp~~el~~ 217 (287)
T KOG1682|consen 179 ---AVPRKVAAYMLMTGLPITGEEALISGLVSKVVPAEELDK 217 (287)
T ss_pred ---hcchhHHHHHHHhCCCCchHHHHHhhhhhhcCCHHHHHH
Confidence 123333334444467789999999999999988777653
No 140
>PF06833 MdcE: Malonate decarboxylase gamma subunit (MdcE); InterPro: IPR009648 This family consists of several bacterial malonate decarboxylase gamma subunit proteins. Malonate decarboxylase of Klebsiella pneumoniae consists of four different subunits and catalyses the conversion of malonate plus H+ to acetate and CO2. The catalysis proceeds via acetyl and malonyl thioester residues with the phosphribosyl-dephospho-CoA prosthetic group of the acyl carrier protein (ACP) subunit. MdcD and E together probably function as malonyl-S-ACP decarboxylase []. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase, while the gamma subunit appears either to mediate subunit interaction or to act as a co-decarboxylase with the beta subunit. The beta and gamma subunits exhibit some local sequence similarity.
Probab=96.15 E-value=0.054 Score=45.75 Aligned_cols=111 Identities=17% Similarity=0.190 Sum_probs=71.6
Q ss_pred cCCCCCceEEEEeCCCC---ChhHHHH----------HHHHHHhcCCCeEEEEccccchHHHHHHh-cCCCCcEeeccCC
Q 028125 57 SVDDSKRVYMYINGPGG---DVTPTLA----------IYDTMQSLKSPVGTHCVGFAYHLAGFLLA-GGEKGNRSAMPLS 122 (213)
Q Consensus 57 ~~~~~~~I~l~INSpGG---~v~~~~~----------I~~~i~~~~~~v~t~~~G~aaSaa~~I~~-ag~~~~r~~~p~s 122 (213)
.+....+|++.+++||- .-++.+- -|..-|..+.||++.+.|.|.|+|.+-.- .+++ .++.|.+
T Consensus 60 ~~~~krpIv~lVD~~sQa~grreEllGi~~alAhla~a~a~AR~~GHpvI~Lv~G~A~SGaFLA~GlqA~r--l~AL~ga 137 (234)
T PF06833_consen 60 RSGPKRPIVALVDVPSQAYGRREELLGINQALAHLAKAYALARLAGHPVIGLVYGKAMSGAFLAHGLQANR--LIALPGA 137 (234)
T ss_pred hcCCCCCEEEEEeCCccccchHHHHhhHHHHHHHHHHHHHHHHHcCCCeEEEEecccccHHHHHHHHHhcc--hhcCCCC
Confidence 34567899999999994 3344443 34555666789999999999999976543 4555 8888854
Q ss_pred eEEEeCCCccCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhcCCcee--CHHHHHHcCCceEecC
Q 028125 123 RIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRF--GSQEALEYGLIDRIIR 195 (213)
Q Consensus 123 ~i~iH~p~~~~~G~~~d~~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~~~~~~--sa~EA~~~GLiD~I~~ 195 (213)
.+ |-..- ...++-|.+|.++++++...--.| ..+-=.++|.++++.+
T Consensus 138 ~i--~vM~~------------------------~s~ARVTk~~ve~Le~la~s~PvfA~gi~ny~~lG~l~~l~~ 186 (234)
T PF06833_consen 138 MI--HVMGK------------------------PSAARVTKRPVEELEELAKSVPVFAPGIENYAKLGALDELWD 186 (234)
T ss_pred ee--ecCCh------------------------HHhHHHhhcCHHHHHHHhhcCCCcCCCHHHHHHhccHHHHhc
Confidence 43 33211 112444667777777766433333 4556666777777666
No 141
>COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism]
Probab=95.96 E-value=0.027 Score=52.77 Aligned_cols=92 Identities=18% Similarity=0.218 Sum_probs=67.5
Q ss_pred ccccCcchHHHHHHHHHhhccCCCCCceEEEEeCCC----------CChhHHHHHHHHHHhcCCCeEEEEccccchHHHH
Q 028125 37 GQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPG----------GDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGF 106 (213)
Q Consensus 37 ~G~I~~~~~~~l~~~l~~l~~~~~~~~I~l~INSpG----------G~v~~~~~I~~~i~~~~~~v~t~~~G~aaSaa~~ 106 (213)
.|.|+.+++.+--..++..+. ..-+|++..|.|| |-+-.|-.|..++-++.+|.+|++.+.+..+|++
T Consensus 337 ~G~l~~~sa~KaArFI~~cd~--~~iPlv~L~d~pGFm~G~~~E~~giik~Gakl~~A~aeatVPkitvI~rkayGga~~ 414 (526)
T COG4799 337 GGVLDIDSADKAARFIRLCDA--FNIPLVFLVDTPGFMPGTDQEYGGIIKHGAKLLYAVAEATVPKITVITRKAYGGAYY 414 (526)
T ss_pred ccccchHHHHHHHHHHHhhhc--cCCCeEEEeCCCCCCCChhHHhChHHHhhhHHHhhHhhccCCeEEEEecccccceee
Confidence 677888877766655543322 3558999999999 4467777899999999999999999999999888
Q ss_pred HHhcCCC--CcEeeccCCeEEEeCCC
Q 028125 107 LLAGGEK--GNRSAMPLSRIALDSPA 130 (213)
Q Consensus 107 I~~ag~~--~~r~~~p~s~i~iH~p~ 130 (213)
.+++..- ...++.|++.+.+..|.
T Consensus 415 ~M~~~~~~~~~~~AwP~a~iaVMG~e 440 (526)
T COG4799 415 VMGGKALGPDFNYAWPTAEIAVMGPE 440 (526)
T ss_pred eecCccCCCceeEecCcceeeecCHH
Confidence 8775432 12566777776654443
No 142
>PLN02820 3-methylcrotonyl-CoA carboxylase, beta chain
Probab=95.52 E-value=0.097 Score=49.83 Aligned_cols=89 Identities=11% Similarity=0.054 Sum_probs=61.5
Q ss_pred ccccCcchHHHHHHHHHhhccCCCCCceEEEEeCCCCChh---H-------HHHHHHH-HHhc--CCCeEEEEccccchH
Q 028125 37 GQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVT---P-------TLAIYDT-MQSL--KSPVGTHCVGFAYHL 103 (213)
Q Consensus 37 ~G~I~~~~~~~l~~~l~~l~~~~~~~~I~l~INSpGG~v~---~-------~~~I~~~-i~~~--~~~v~t~~~G~aaSa 103 (213)
.|.++....+++...+....+ ..-+|+..++|+|+.+. . .-.|+.. .+.+ ..|.++++.|.|+++
T Consensus 142 GGs~g~~~~~Ki~r~~elA~~--~~lPlV~l~DSgGarl~~q~e~~~~~~~~g~if~~~~~ls~~~VP~Isvv~G~~~gG 219 (569)
T PLN02820 142 GGTYYPITVKKHLRAQEIAAQ--CRLPCIYLVDSGGANLPRQAEVFPDRDHFGRIFYNQARMSSAGIPQIALVLGSCTAG 219 (569)
T ss_pred CCCCCHHHHHHHHHHHHHHHH--cCCCEEEEEeCCCcCCcccccccchHhHHHHHHHHHHHHhCCCCCEEEEEeCCCChH
Confidence 344455556777776654433 24589999999998862 1 1134433 2323 479999999999999
Q ss_pred HHHHHhcCCCCcEeecc-CCeEEEeCC
Q 028125 104 AGFLLAGGEKGNRSAMP-LSRIALDSP 129 (213)
Q Consensus 104 a~~I~~ag~~~~r~~~p-~s~i~iH~p 129 (213)
++|+...+|. .+|.+ ++.+.+-.|
T Consensus 220 gAy~~a~~D~--vim~~~~a~i~~aGP 244 (569)
T PLN02820 220 GAYVPAMADE--SVIVKGNGTIFLAGP 244 (569)
T ss_pred HHHHHHhCCc--eEEecCCcEEEecCH
Confidence 9999988886 66664 677877766
No 143
>CHL00174 accD acetyl-CoA carboxylase beta subunit; Reviewed
Probab=94.51 E-value=0.24 Score=43.39 Aligned_cols=83 Identities=16% Similarity=0.070 Sum_probs=59.0
Q ss_pred hHHHHHHHHHhhccCCCCCceEEEEeCCCCChhHHH-------HH----HHHHHhcCCCeEEEEccccchHHHHHHhc-C
Q 028125 44 FSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTL-------AI----YDTMQSLKSPVGTHCVGFAYHLAGFLLAG-G 111 (213)
Q Consensus 44 ~~~~l~~~l~~l~~~~~~~~I~l~INSpGG~v~~~~-------~I----~~~i~~~~~~v~t~~~G~aaSaa~~I~~a-g 111 (213)
..+.+...+..+.. ..-++++...|-|+.+.++. .+ ....+.-..|.++++.|-++.++++.++. |
T Consensus 153 ~geKi~ra~e~A~~--~rlPlV~l~~SGGARmQEg~~sL~qmak~saa~~~~~~~~~vP~Isvl~gPt~GG~aas~a~l~ 230 (296)
T CHL00174 153 VGEKITRLIEYATN--ESLPLIIVCASGGARMQEGSLSLMQMAKISSALYDYQSNKKLFYISILTSPTTGGVTASFGMLG 230 (296)
T ss_pred HHHHHHHHHHHHHH--cCCCEEEEECCCCccccccchhhhhhHHHHHHHHHHHHcCCCCEEEEEcCCCchHHHHHHHHcc
Confidence 35677666654432 34689999999998876554 12 11122344799999999999888888765 8
Q ss_pred CCCcEeeccCCeEEEeCCC
Q 028125 112 EKGNRSAMPLSRIALDSPA 130 (213)
Q Consensus 112 ~~~~r~~~p~s~i~iH~p~ 130 (213)
|. +++.|++.+.+-.|.
T Consensus 231 Di--iiae~~A~IgfAGPr 247 (296)
T CHL00174 231 DI--IIAEPNAYIAFAGKR 247 (296)
T ss_pred cE--EEEeCCeEEEeeCHH
Confidence 87 889999999877664
No 144
>KOG0016 consensus Enoyl-CoA hydratase/isomerase [Lipid transport and metabolism]
Probab=94.09 E-value=0.38 Score=41.19 Aligned_cols=99 Identities=18% Similarity=0.154 Sum_probs=62.8
Q ss_pred HHHHHHhcCCCeEEEEccccchHHHHHHhcCCCCcEeeccCCeEEEeCCCccCCCChHHHHHHHHHHHHHHHHHHHHHHH
Q 028125 81 IYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSR 160 (213)
Q Consensus 81 I~~~i~~~~~~v~t~~~G~aaSaa~~I~~ag~~~~r~~~p~s~i~iH~p~~~~~G~~~d~~~~~~~l~~~~~~~~~~~a~ 160 (213)
..++.-.+++|+++.+.|-|-..|..|+--||. -++.. ...+|.|.+.. |...|--.. . .+-..
T Consensus 99 ~v~~fi~f~Kplia~vNGPAIGlgasil~lcD~--V~A~D--ka~F~TPfa~l-Gq~PEG~Ss--~--t~p~i------- 162 (266)
T KOG0016|consen 99 FVNTFINFPKPLVALVNGPAIGLGASILPLCDY--VWASD--KAWFQTPFAKL-GQSPEGCSS--V--TLPKI------- 162 (266)
T ss_pred HHHHHhcCCCCEEEEecCCccchhhHHhhhhhe--EEecc--ceEEeccchhc-CCCCCccee--e--eehHh-------
Confidence 557788889999999999999999999999986 66664 44556665421 110000000 0 00000
Q ss_pred HhCCCHHHHHHHhcCCceeCHHHHHHcCCceEecCCcc
Q 028125 161 KTGQPFEKITKDLSRIKRFGSQEALEYGLIDRIIRPPR 198 (213)
Q Consensus 161 ~tg~~~~~i~~~~~~~~~~sa~EA~~~GLiD~I~~~~~ 198 (213)
+......+++=-..-|+++||.+.|||++|.....
T Consensus 163 ---mG~~~A~E~ll~~~kltA~Ea~~~glVskif~~~t 197 (266)
T KOG0016|consen 163 ---MGSASANEMLLFGEKLTAQEACEKGLVSKIFPAET 197 (266)
T ss_pred ---hchhhHHHHHHhCCcccHHHHHhcCchhhhcChHH
Confidence 11223334443456789999999999999987644
No 145
>TIGR01117 mmdA methylmalonyl-CoA decarboxylase alpha subunit. This model describes methymalonyl-CoA decarboxylase aplha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane.
Probab=93.99 E-value=0.37 Score=45.36 Aligned_cols=84 Identities=12% Similarity=0.032 Sum_probs=60.1
Q ss_pred chHHHHHHHHHhhccCCCCCceEEEEeCCCCChhHHH-------HHH-HHHHh-cCCCeEEEEccccchHHHHHHhcCCC
Q 028125 43 EFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTL-------AIY-DTMQS-LKSPVGTHCVGFAYHLAGFLLAGGEK 113 (213)
Q Consensus 43 ~~~~~l~~~l~~l~~~~~~~~I~l~INSpGG~v~~~~-------~I~-~~i~~-~~~~v~t~~~G~aaSaa~~I~~ag~~ 113 (213)
...+++...+..+.+ ..-+++..++|-|+.+..+. .++ ...+. -..|.++++.|.|..++++.++.||.
T Consensus 101 ~~~~K~~r~~e~A~~--~~lPlV~l~dSgGarm~eg~~~l~~~~~~~~~~~~~s~~iP~Isvv~G~~~GG~a~~~al~D~ 178 (512)
T TIGR01117 101 MHAAKIVKIMDLAMK--MGAPVVGLNDSGGARIQEAVDALKGYGDIFYRNTIASGVVPQISAIMGPCAGGAVYSPALTDF 178 (512)
T ss_pred HHHHHHHHHHHHHHH--cCCCEEEEecCCCCCccccchhhhhHHHHHHHHHHHcCCCcEEEEEecCCCcHHHHHHHhcCc
Confidence 345677766654433 24689999999999875433 222 22222 23799999999999999999999998
Q ss_pred CcEeeccCC-eEEEeCCC
Q 028125 114 GNRSAMPLS-RIALDSPA 130 (213)
Q Consensus 114 ~~r~~~p~s-~i~iH~p~ 130 (213)
.+|.+++ .+.+-.|.
T Consensus 179 --vim~~~~a~i~~aGP~ 194 (512)
T TIGR01117 179 --IYMVDNTSQMFITGPQ 194 (512)
T ss_pred --eEEeccceEEEecChH
Confidence 9999975 57776664
No 146
>KOG1684 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=91.78 E-value=0.44 Score=42.76 Aligned_cols=93 Identities=17% Similarity=0.140 Sum_probs=68.7
Q ss_pred cCcEEEEccc-----cCcchHHHHHHHHHhhccCCCCCceEEEEe-----CCCCChhHHH-------------------H
Q 028125 30 RERVIFIGQN-----IDEEFSNQILATMLYLDSVDDSKRVYMYIN-----GPGGDVTPTL-------------------A 80 (213)
Q Consensus 30 ~~~iI~i~G~-----I~~~~~~~l~~~l~~l~~~~~~~~I~l~IN-----SpGG~v~~~~-------------------~ 80 (213)
..++|+++-| +|-++...+..+|..++..+..+.|.+.=+ +-||+|-+.- .
T Consensus 47 ~~r~itLNRPKaLNAlnleMv~~~~~~L~~we~s~~~k~vIlkgs~~raFCAGgDI~~~ae~~~d~~~~~~~~fF~~eYs 126 (401)
T KOG1684|consen 47 CARVITLNRPKALNALNLEMVLSIYPKLVEWEKSPLVKLVILKGSGGRAFCAGGDIKAVAESIKDKETPEVKKFFTEEYS 126 (401)
T ss_pred ceeEEEecCchhhccccHHHHHHHHHHHHhhccCCCceEEEEecCCCceeecCccHHHHHHHhhcCCchHHHHHHHHHHH
Confidence 3578888776 677888888999999988776665554444 3467753222 3
Q ss_pred HHHHHHhcCCCeEEEEccccchHHHHHHhcCCCCcEeeccCCeE
Q 028125 81 IYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRI 124 (213)
Q Consensus 81 I~~~i~~~~~~v~t~~~G~aaSaa~~I~~ag~~~~r~~~p~s~i 124 (213)
+...|-.+.+|++++..|.-+.+|.=+...|.- |++...|.|
T Consensus 127 l~~~igtY~KP~ValmdGITMGgG~GLS~hg~f--RVATerT~~ 168 (401)
T KOG1684|consen 127 LNHLIGTYLKPYVALMDGITMGGGVGLSVHGRF--RVATERTVF 168 (401)
T ss_pred HHHHHHHhcCceEEEeeceeecCCcceeeccee--EEeecccee
Confidence 445667778999999999999999999998876 777766653
No 147
>PF08496 Peptidase_S49_N: Peptidase family S49 N-terminal; InterPro: IPR013703 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain is found to the N terminus of bacterial signal peptidases that belong to the MEROPS peptidase family S49 (protease IV family, clan SK) (see also IPR002142 from INTERPRO) [, ]. ; GO: 0004252 serine-type endopeptidase activity, 0005886 plasma membrane
Probab=91.69 E-value=0.29 Score=38.87 Aligned_cols=44 Identities=18% Similarity=0.264 Sum_probs=30.9
Q ss_pred EEEEccccCcchHHHHHHHHHh-hccCCCCCceEEEEeCCCCChh
Q 028125 33 VIFIGQNIDEEFSNQILATMLY-LDSVDDSKRVYMYINGPGGDVT 76 (213)
Q Consensus 33 iI~i~G~I~~~~~~~l~~~l~~-l~~~~~~~~I~l~INSpGG~v~ 76 (213)
++-+.|.|....++.+.+.+-. |....+.+.|.|++-||||-|.
T Consensus 102 VldF~Gdi~A~~v~~LReeisail~~a~~~DeV~~rLES~GG~Vh 146 (155)
T PF08496_consen 102 VLDFKGDIKASEVESLREEISAILSVATPEDEVLVRLESPGGMVH 146 (155)
T ss_pred EEecCCCccHHHHHHHHHHHHHHHHhCCCCCeEEEEEecCCceee
Confidence 4557999998766655554432 2233456899999999999874
No 148
>PF01039 Carboxyl_trans: Carboxyl transferase domain; InterPro: IPR000022 Members in this domain include biotin dependent carboxylases [, ]. The carboxyl transferase domain carries out the following reaction; transcarboxylation from biotin to an acceptor molecule. There are two recognised types of carboxyl transferase. One of them uses acyl-CoA and the other uses 2-oxo acid as the acceptor molecule of carbon dioxide. All of the members in this family utilise acyl-CoA as the acceptor molecule.; GO: 0016874 ligase activity; PDB: 2F9Y_B 1XO6_B 1XNV_B 3MFM_C 3IBB_A 1XNW_F 3IAV_B 1XNY_A 3IB9_A 3U9S_F ....
Probab=91.32 E-value=0.25 Score=46.27 Aligned_cols=84 Identities=14% Similarity=0.132 Sum_probs=58.6
Q ss_pred chHHHHHHHHHhhccCCCCCceEEEEeCCCC--ChhHHH-------HHHHHHHhc--CCCeEEEEccccchHHHHHHhcC
Q 028125 43 EFSNQILATMLYLDSVDDSKRVYMYINGPGG--DVTPTL-------AIYDTMQSL--KSPVGTHCVGFAYHLAGFLLAGG 111 (213)
Q Consensus 43 ~~~~~l~~~l~~l~~~~~~~~I~l~INSpGG--~v~~~~-------~I~~~i~~~--~~~v~t~~~G~aaSaa~~I~~ag 111 (213)
...+++...+....+. .-+++..++|-|+ .+..+. .++..+..+ ..|+++++.|.|..+++|.+..+
T Consensus 76 ~~~~Ki~ra~~~A~~~--~~P~v~l~dsgGa~~r~~eg~~~l~~~g~i~~~~~~~~~~iP~I~vv~G~~~Gg~A~~~~~~ 153 (493)
T PF01039_consen 76 VHGEKIARAIELALEN--GLPLVYLVDSGGAFLRMQEGVESLMGMGRIFRAIARLSGGIPQISVVTGPCTGGGAYLAALS 153 (493)
T ss_dssp HHHHHHHHHHHHHHHH--TEEEEEEEEESSBCGGGGGHHHHHHHHHHHHHHHHHHHTTS-EEEEEESEEEGGGGHHHHHS
T ss_pred ccceeeehHHHHHHHc--CCCcEEeccccccccccchhhhhhhhhHHHHHHHHHHhcCCCeEEEEccccccchhhccccc
Confidence 3456766666544332 4578888999999 443333 222222222 48999999999999999999999
Q ss_pred CCCcEeeccC-CeEEEeCCC
Q 028125 112 EKGNRSAMPL-SRIALDSPA 130 (213)
Q Consensus 112 ~~~~r~~~p~-s~i~iH~p~ 130 (213)
|. .+|.++ +.+.+..|.
T Consensus 154 d~--~i~~~~~a~i~l~GP~ 171 (493)
T PF01039_consen 154 DF--VIMVKGTARIFLAGPR 171 (493)
T ss_dssp SE--EEEETTTCEEESSTHH
T ss_pred Cc--cccCccceEEEecccc
Confidence 87 889997 899887774
No 149
>cd06567 Peptidase_S41 C-terminal processing peptidase family S41. Peptidase family S41 (C-terminal processing peptidase or CTPase family) contains very different subfamilies; it includes photosystem II D1 C-terminal processing protease (CTPase), interphotoreceptor retinoid-binding protein IRBP and tricorn protease (TRI). CTPase and TRI both contain the PDZ domain while IRBP, although being very similar to the tail-specific protease domain, lacks the PDZ insertion domain and hydrolytic activity. These serine proteases have distinctly different active sites: in CTPase, the active site consists of a serine/lysine catalytic dyad while in tricorn core protease, it is a tetrad (serine, histidine, serine, glutamate). CPases with different substrate specificities in different species include processing of D1 protein of the photosystem II reaction center in higher plants and cleavage of a peptide of 11 residues from the precursor form of penicillin-binding protein; and others such as tricorn pr
Probab=91.28 E-value=1.5 Score=36.03 Aligned_cols=70 Identities=11% Similarity=0.181 Sum_probs=53.3
Q ss_pred cchHHHHHHHHHhhccCCCCCceEEEE-eCCCCChhHHHHHHHHHHh--------------------------cCCCeEE
Q 028125 42 EEFSNQILATMLYLDSVDDSKRVYMYI-NGPGGDVTPTLAIYDTMQS--------------------------LKSPVGT 94 (213)
Q Consensus 42 ~~~~~~l~~~l~~l~~~~~~~~I~l~I-NSpGG~v~~~~~I~~~i~~--------------------------~~~~v~t 94 (213)
+...+.+.+.+..+++ ..+.++|-+ +-+||.+..+..|.+.+-. ...|+++
T Consensus 72 ~~~~~~~~~~~~~~~~--~~~~lIiDLR~N~GG~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~v 149 (224)
T cd06567 72 ESTAEELREALAELKK--GVKGLILDLRNNPGGLLSAAVELASLFLPKGKIVVTTRRRGGNETEYVAPGGGSLYDGPLVV 149 (224)
T ss_pred cchHHHHHHHHHHHHc--CCCEEEEEcCCCCCccHHHHHHHHHHhcCCCcEEEEEecCCCceeEEecCCCCcccCCCEEE
Confidence 4455666666665544 478888888 7789999999999988764 2358999
Q ss_pred EEccccchHHHHHHhcCCC
Q 028125 95 HCVGFAYHLAGFLLAGGEK 113 (213)
Q Consensus 95 ~~~G~aaSaa~~I~~ag~~ 113 (213)
.+.+..+|+|-+++.+-+.
T Consensus 150 L~~~~taSaaE~~a~~lk~ 168 (224)
T cd06567 150 LVNEGSASASEIFAGALQD 168 (224)
T ss_pred EECCCCccHHHHHHHHHHh
Confidence 9999999999888876543
No 150
>TIGR00225 prc C-terminal peptidase (prc). A C-terminal peptidase with different substrates in different species including processing of D1 protein of the photosystem II reaction center in higher plants and cleavage of a peptide of 11 residues from the precursor form of penicillin-binding protein in E.coli E.coli and H influenza have the most distal branch of the tree and their proteins have an N-terminal 200 amino acids that show no homology to other proteins in the database.
Probab=88.43 E-value=2.1 Score=37.84 Aligned_cols=72 Identities=11% Similarity=0.148 Sum_probs=55.1
Q ss_pred CcchHHHHHHHHHhhccCCCCCceEEEE-eCCCCChhHHHHHHHHHHh------------------------cCCCeEEE
Q 028125 41 DEEFSNQILATMLYLDSVDDSKRVYMYI-NGPGGDVTPTLAIYDTMQS------------------------LKSPVGTH 95 (213)
Q Consensus 41 ~~~~~~~l~~~l~~l~~~~~~~~I~l~I-NSpGG~v~~~~~I~~~i~~------------------------~~~~v~t~ 95 (213)
+....+.+.+.+..++.. +.+.++|-+ +-+||.+..+..+...+-. ...||+..
T Consensus 162 ~~~~~~~~~~~l~~l~~~-~~~~lIiDLR~N~GG~~~~a~~~a~~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~~pv~vL 240 (334)
T TIGR00225 162 SEHTTEDVKKALDKLEKK-NAKGYILDLRGNPGGLLQSAVDISRLFITKGPIVQTKDRNGSKRHYKANGRQPYNLPLVVL 240 (334)
T ss_pred ccchHHHHHHHHHHHHhc-cCceEEEEcCCCCCCCHHHHHHHHHHhcCCCcEEEEEcCCCcceEEecCCCccCCCCEEEE
Confidence 344567777777776554 478899988 7899999999998887621 23589999
Q ss_pred EccccchHHHHHHhcCCC
Q 028125 96 CVGFAYHLAGFLLAGGEK 113 (213)
Q Consensus 96 ~~G~aaSaa~~I~~ag~~ 113 (213)
+.+..+|+|-+++.+-..
T Consensus 241 vn~~TaSaaE~~a~~l~~ 258 (334)
T TIGR00225 241 VNRGSASASEIFAGALQD 258 (334)
T ss_pred ECCCCCcHHHHHHHHHHh
Confidence 999999999888886643
No 151
>cd07560 Peptidase_S41_CPP C-terminal processing peptidase; serine protease family S41. The C-terminal processing peptidase (CPP, EC 3.4.21.102) also known as tail-specific protease (tsp), the photosystem II D1 C-terminal processing protease (D1P), and other related S41 protease family members are present in this CD. CPP is synthesized as a precursor form with a carboxyl-terminal extension. It specifically recognizes a C-terminal tripeptide, Xaa-Yaa-Zaa, in which Xaa is preferably Ala or Leu, Yaa is preferably Ala or Tyr and Zaa is preferably Ala, but then cleaves at a variable distance from the C-terminus. The C-terminal carboxylate group is essential, and proteins where this group is amidated are not substrates. This family of proteases contains the PDZ domain that promotes protein-protein interactions and is important for substrate recognition. The active site consists of a serine/lysine catalytic dyad. The bacterial CCP-1 is believed to be important for the degradation of incorrectl
Probab=87.80 E-value=4.1 Score=33.70 Aligned_cols=72 Identities=15% Similarity=0.215 Sum_probs=52.3
Q ss_pred CcchHHHHHHHHHhhccCCCCCceEEEE-eCCCCChhHHHHHHHHHHh------------------------cCCCeEEE
Q 028125 41 DEEFSNQILATMLYLDSVDDSKRVYMYI-NGPGGDVTPTLAIYDTMQS------------------------LKSPVGTH 95 (213)
Q Consensus 41 ~~~~~~~l~~~l~~l~~~~~~~~I~l~I-NSpGG~v~~~~~I~~~i~~------------------------~~~~v~t~ 95 (213)
+....+.+.+.+..+...+ .+.++|-+ +.+||.+..+..|...+-. ...|+++.
T Consensus 59 ~~~~~~~~~~~l~~~~~~~-~~~lIlDLR~N~GG~~~~~~~i~~~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~~pvvVL 137 (211)
T cd07560 59 SENTAEELKKALKELKKQG-MKGLILDLRNNPGGLLDEAVEIADLFLPGGPIVSTKGRNGKREAYASDDGGLYDGPLVVL 137 (211)
T ss_pred CchhHHHHHHHHHHHHhcc-CceEEEEcCCCCCCCHHHHHHHHHHhcCCCeEEEEEecCCceEEEecCCCccCCCCEEEE
Confidence 3445566777776665543 67888888 6789999998888765542 24688889
Q ss_pred EccccchHHHHHHhcCCC
Q 028125 96 CVGFAYHLAGFLLAGGEK 113 (213)
Q Consensus 96 ~~G~aaSaa~~I~~ag~~ 113 (213)
+.+..+|+|-+++.+-+.
T Consensus 138 vn~~TaSaaE~~a~~lk~ 155 (211)
T cd07560 138 VNGGSASASEIVAGALQD 155 (211)
T ss_pred eCCCcccHHHHHHHHHhh
Confidence 999999999888876543
No 152
>PLN00049 carboxyl-terminal processing protease; Provisional
Probab=87.23 E-value=2.6 Score=38.18 Aligned_cols=71 Identities=10% Similarity=0.091 Sum_probs=53.8
Q ss_pred CcchHHHHHHHHHhhccCCCCCceEEEE-eCCCCChhHHHHHHHHHHh--------------------------cCCCeE
Q 028125 41 DEEFSNQILATMLYLDSVDDSKRVYMYI-NGPGGDVTPTLAIYDTMQS--------------------------LKSPVG 93 (213)
Q Consensus 41 ~~~~~~~l~~~l~~l~~~~~~~~I~l~I-NSpGG~v~~~~~I~~~i~~--------------------------~~~~v~ 93 (213)
+....+.+.+.+..+... ..+.++|-+ |-|||.+..+..|.+.+-. ...|++
T Consensus 205 ~~~~~~~~~~~l~~l~~~-~~~glIlDLR~N~GG~~~~a~~ia~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pvv 283 (389)
T PLN00049 205 NQNASSAVKEAIETLRAN-GVDAFVLDLRDNSGGLFPAGIEIAKLWLDKGVIVYIADSRGVRDIYDADGSSAIATSEPLA 283 (389)
T ss_pred cchhHHHHHHHHHHHHHC-CCCEEEEEcCCCCCCCHHHHHHHHHHhcCCCcEEEEecCCCceeEEecCCCccccCCCCEE
Confidence 344567777777777654 378899888 7789999999999887721 125889
Q ss_pred EEEccccchHHHHHHhcCC
Q 028125 94 THCVGFAYHLAGFLLAGGE 112 (213)
Q Consensus 94 t~~~G~aaSaa~~I~~ag~ 112 (213)
+.+.+..||++-+++.+=.
T Consensus 284 VLvn~~TaSasEi~a~alk 302 (389)
T PLN00049 284 VLVNKGTASASEILAGALK 302 (389)
T ss_pred EEECCCCccHHHHHHHHHh
Confidence 9999999999988877543
No 153
>PRK11186 carboxy-terminal protease; Provisional
Probab=85.74 E-value=3 Score=40.61 Aligned_cols=67 Identities=10% Similarity=0.221 Sum_probs=52.6
Q ss_pred hHHHHHHHHHhhccCCCCCceEEEE-eCCCCChhHHHHHHHHHHh-------------------------cCCCeEEEEc
Q 028125 44 FSNQILATMLYLDSVDDSKRVYMYI-NGPGGDVTPTLAIYDTMQS-------------------------LKSPVGTHCV 97 (213)
Q Consensus 44 ~~~~l~~~l~~l~~~~~~~~I~l~I-NSpGG~v~~~~~I~~~i~~-------------------------~~~~v~t~~~ 97 (213)
..+.+.+.|..+..+ ..+.++|-+ |-|||.+..+..|...+-. ...|+++.+.
T Consensus 367 ~~~d~~~~l~~l~~~-~v~gLIlDLR~NgGG~l~~a~~la~lFi~~g~vv~~~~~~g~~~~~~~~~~~~~~~gPlvVLVN 445 (667)
T PRK11186 367 LTDDVKKQLQKLEKQ-NVSGIIIDLRGNGGGALTEAVSLSGLFIPSGPVVQVRDNNGRVRVDSDTDGVVYYKGPLVVLVD 445 (667)
T ss_pred hHHHHHHHHHHHHHC-CCCEEEEEcCCCCCCcHHHHHHHHHHHhcCCceEEEecCCCceeccccCCcccccCCCEEEEeC
Confidence 466777777777654 488999999 8899999999999876421 1249999999
Q ss_pred cccchHHHHHHhcC
Q 028125 98 GFAYHLAGFLLAGG 111 (213)
Q Consensus 98 G~aaSaa~~I~~ag 111 (213)
+..|||+-+++.|-
T Consensus 446 ~~SASASEIfA~al 459 (667)
T PRK11186 446 RYSASASEIFAAAM 459 (667)
T ss_pred CCCccHHHHHHHHH
Confidence 99999998888754
No 154
>cd07561 Peptidase_S41_CPP_like C-terminal processing peptidase-like; serine protease family S41. Bacterial protease homologs of the S41 family related to C-terminal processing peptidase (CPP). CPP-1 is believed to be important for the degradation of incorrectly synthesized proteins as well as protection from thermal and osmotic stresses. CPP is synthesized with an extension on its carboxyl-terminus and specifically recognizes a C-terminal tripeptide, but cleaves at variable distance from the C-terminus. The CPP active site consists of a serine/lysine catalytic dyad. Conservation of these residues is seen in the CPP-like proteins of this group. CPP proteins contain a PDZ domain that promotes protein-protein interactions and is important for substrate recognition however, most of CPP-like proteins only have an internal fragment or lack the PDZ domain.
Probab=85.47 E-value=4.2 Score=34.77 Aligned_cols=44 Identities=7% Similarity=0.175 Sum_probs=34.8
Q ss_pred chHHHHHHHHHhhccCCCCCceEEEE-eCCCCChhHHHHHHHHHHh
Q 028125 43 EFSNQILATMLYLDSVDDSKRVYMYI-NGPGGDVTPTLAIYDTMQS 87 (213)
Q Consensus 43 ~~~~~l~~~l~~l~~~~~~~~I~l~I-NSpGG~v~~~~~I~~~i~~ 87 (213)
...+.+.+.+..++++ ..+.++|-+ +-+||.+..+..|.+.+-.
T Consensus 77 ~~~~~l~~a~~~l~~~-~~~~LIlDLR~N~GG~~~~a~~las~f~~ 121 (256)
T cd07561 77 GYDDELNQAFAEFKAQ-GVTELVLDLRYNGGGLVSSANLLASLLAP 121 (256)
T ss_pred chHHHHHHHHHHHHHc-CCCeEEEEeCCCCCccHHHHHHHHHHhcC
Confidence 3557777777777665 478888888 7799999999999888775
No 155
>COG0793 Prc Periplasmic protease [Cell envelope biogenesis, outer membrane]
Probab=84.64 E-value=3.6 Score=37.67 Aligned_cols=69 Identities=10% Similarity=0.120 Sum_probs=55.6
Q ss_pred chHHHHHHHHHhhccCCCCCceEEEE-eCCCCChhHHHHHHHHHHh-------------------------cCCCeEEEE
Q 028125 43 EFSNQILATMLYLDSVDDSKRVYMYI-NGPGGDVTPTLAIYDTMQS-------------------------LKSPVGTHC 96 (213)
Q Consensus 43 ~~~~~l~~~l~~l~~~~~~~~I~l~I-NSpGG~v~~~~~I~~~i~~-------------------------~~~~v~t~~ 96 (213)
...+.+...+..|+++. .++++|-+ |-|||.+.++..+.+.... ...|+++.+
T Consensus 216 ~~~~~~~~al~~L~~~~-~~GlIlDLR~N~GG~L~~av~i~~~f~~~g~iv~~~~r~g~~~~~~~~~~~~~~~~PlvvLv 294 (406)
T COG0793 216 GTYEDLEKALDELKKQG-AKGLILDLRNNPGGLLSQAVKLAGLFLPSGPIVSTRGRNGKVNVYFSASGEALYDGPLVVLV 294 (406)
T ss_pred chHHHHHHHHHHHHhcC-CcEEEEEeCCCCCccHHHHHHHHHcccCCCcEEEEecCCCceeeccccccccCCCCCEEEEE
Confidence 34566777777787765 89999999 8899999999999987762 125899999
Q ss_pred ccccchHHHHHHhcCC
Q 028125 97 VGFAYHLAGFLLAGGE 112 (213)
Q Consensus 97 ~G~aaSaa~~I~~ag~ 112 (213)
.+..||++=+.+.|-.
T Consensus 295 n~~SASAsEI~agalq 310 (406)
T COG0793 295 NEGSASASEIFAGALQ 310 (406)
T ss_pred CCCCccHHHHHHHHHH
Confidence 9999999988877654
No 156
>COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism]
Probab=81.19 E-value=4.6 Score=38.18 Aligned_cols=82 Identities=13% Similarity=0.033 Sum_probs=58.1
Q ss_pred hHHHHHHHHHhhccCCCCCceEEEEeCCCCChhH--------HHHHHHHHHhcC-CCeEEEEccccchHHHHHHhcCCCC
Q 028125 44 FSNQILATMLYLDSVDDSKRVYMYINGPGGDVTP--------TLAIYDTMQSLK-SPVGTHCVGFAYHLAGFLLAGGEKG 114 (213)
Q Consensus 44 ~~~~l~~~l~~l~~~~~~~~I~l~INSpGG~v~~--------~~~I~~~i~~~~-~~v~t~~~G~aaSaa~~I~~ag~~~ 114 (213)
..+.++.....+. + ...+++...+|-|+.+.. +.-.++..+.+. .|.++++.|.|+.+|.|+-.-+|.
T Consensus 111 ~~~Ki~r~~~~A~-~-~g~P~i~l~dsgGari~~~v~~l~g~g~iF~~~a~~Sg~IPqIsvv~G~c~gGgaY~pal~D~- 187 (526)
T COG4799 111 TAKKILRAQELAI-E-NGLPVIGLNDSGGARIQEGVPSLAGYGRIFYRNARASGVIPQISVVMGPCAGGGAYSPALTDF- 187 (526)
T ss_pred ccchHHHHHHHHH-H-cCCCEEEEEcccccccccCccccccchHHHHHHHHhccCCCEEEEEEecCcccccccccccce-
Confidence 4555555444322 2 245677777887766533 445566666665 799999999999999999999998
Q ss_pred cEeeccC-CeEEEeCC
Q 028125 115 NRSAMPL-SRIALDSP 129 (213)
Q Consensus 115 ~r~~~p~-s~i~iH~p 129 (213)
.+|.++ +.+.+-.|
T Consensus 188 -~imv~~~~~mfltGP 202 (526)
T COG4799 188 -VIMVRDQSYMFLTGP 202 (526)
T ss_pred -EEEEcCCccEEeeCH
Confidence 899998 66666555
No 157
>smart00245 TSPc tail specific protease. tail specific protease
Probab=79.81 E-value=10 Score=30.61 Aligned_cols=71 Identities=13% Similarity=0.160 Sum_probs=49.5
Q ss_pred CcchHHHHHHHHHhhccCCCCCceEEEE-eCCCCChhHHHHHHHHHHhc-------------------------CCCeEE
Q 028125 41 DEEFSNQILATMLYLDSVDDSKRVYMYI-NGPGGDVTPTLAIYDTMQSL-------------------------KSPVGT 94 (213)
Q Consensus 41 ~~~~~~~l~~~l~~l~~~~~~~~I~l~I-NSpGG~v~~~~~I~~~i~~~-------------------------~~~v~t 94 (213)
+....+.+.+.+..+... +.+.+.|-+ +.+||.+..+..+.+.+-.- ..||+.
T Consensus 39 ~~~~~~~~~~~~~~l~~~-~~~~lIiDLR~N~GG~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~v 117 (192)
T smart00245 39 SEHTSNLVEKAWKKLEKT-NVEGLILDLRNNPGGLLSAAIDVSSLFLDKGVIVYTIYRRTGELETYPANLGRKYSKPLVV 117 (192)
T ss_pred ChhhHHHHHHHHHHHHhC-CCcEEEEEecCCCCCCHHHHHHHHHHhcCCCcEEEEEecCCCceEEEecCCCcccCCCEEE
Confidence 333445566666666544 478888888 55899999999888877321 146788
Q ss_pred EEccccchHHHHHHhcCC
Q 028125 95 HCVGFAYHLAGFLLAGGE 112 (213)
Q Consensus 95 ~~~G~aaSaa~~I~~ag~ 112 (213)
.+.+..+|+|-+++.+-+
T Consensus 118 L~~~~TaSaaE~~a~~lk 135 (192)
T smart00245 118 LVNEGTASASEIFAGALK 135 (192)
T ss_pred EECCCCeeHHHHHHHHHh
Confidence 888888888877777554
No 158
>KOG0540 consensus 3-Methylcrotonyl-CoA carboxylase, non-biotin containing subunit/Acetyl-CoA carboxylase carboxyl transferase, subunit beta [Amino acid transport and metabolism; Lipid transport and metabolism]
Probab=79.13 E-value=6.7 Score=36.39 Aligned_cols=85 Identities=18% Similarity=0.102 Sum_probs=56.3
Q ss_pred cccCcchHHHHHHHHHhhccCCCCCceEEEEeCCCC----------ChhHHHHHHHHHHhcCCCeEEEEccccchHHHHH
Q 028125 38 QNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGG----------DVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFL 107 (213)
Q Consensus 38 G~I~~~~~~~l~~~l~~l~~~~~~~~I~l~INSpGG----------~v~~~~~I~~~i~~~~~~v~t~~~G~aaSaa~~I 107 (213)
|-+..+++.....-+++..+ ..-++.+..|+||= =.-.+-.+..+....+.|.+|++.|-+.. |.|-
T Consensus 363 G~L~s~sa~KgarfIe~c~q--~~IPLi~l~ni~Gfm~g~~~e~~gIaK~gAklv~a~a~akvpkITiit~~syG-G~y~ 439 (536)
T KOG0540|consen 363 GVLFSESAVKGARFIELCDQ--RNIPLIFLQNITGFMVGRAAEAGGIAKHGAKLVYAVACAKVPKITIITGGSYG-GNYA 439 (536)
T ss_pred cccchhhhhhhHHHHHHHHh--cCCcEEEEEccCCccccchhhhhchhhhhhhhhhhhhhccCceEEEEecCccC-Cccc
Confidence 44555556655555554433 35689999999992 22344455666666778999999998888 4444
Q ss_pred Hh----cCCCCcEeeccCCeEEEe
Q 028125 108 LA----GGEKGNRSAMPLSRIALD 127 (213)
Q Consensus 108 ~~----ag~~~~r~~~p~s~i~iH 127 (213)
+| .+|. .|+.||++|.+.
T Consensus 440 m~sr~~~gd~--~yawP~A~Iavm 461 (536)
T KOG0540|consen 440 MCSRGYSGDI--NYAWPNARIAVM 461 (536)
T ss_pred ccccccCCce--eEEcccceeeec
Confidence 33 4555 789999988643
No 159
>PF03572 Peptidase_S41: Peptidase family S41; InterPro: IPR005151 This group of putative serine peptidases belong to the MEROPS peptidase family S41 (C-terminal processing peptidase family, clan SM). The members of this group include: the tricorn protease of bacteria and archaea, C-terminal peptidases with different substrates specificities in different species including processing of D1 protein of the photosystem II reaction centre in higher plants and cleavage of a peptide of 11 residues from the precursor form of penicillin-binding protein; and some appear to be responsible for degrading oligopeptides, probably derived from the proteasome. ; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 1N6F_D 1N6D_C 1N6E_C 1K32_A 3K50_A 3DJA_B 3DPM_B 3DPN_A 3DOR_B 1J7X_A ....
Probab=78.84 E-value=5.3 Score=30.85 Aligned_cols=67 Identities=12% Similarity=0.129 Sum_probs=46.0
Q ss_pred HHHHHHHHHhhccCCCCCceEEEE-eCCCCChhHHHHHHHHHHh-----------------------------cCCCeEE
Q 028125 45 SNQILATMLYLDSVDDSKRVYMYI-NGPGGDVTPTLAIYDTMQS-----------------------------LKSPVGT 94 (213)
Q Consensus 45 ~~~l~~~l~~l~~~~~~~~I~l~I-NSpGG~v~~~~~I~~~i~~-----------------------------~~~~v~t 94 (213)
.+.+.+.+..+.. .+.+.++|-+ +.+||+...+..+...+.. ...|++.
T Consensus 17 ~~~~~~~~~~~~~-~~~~~lIIDlR~N~GG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v 95 (169)
T PF03572_consen 17 DEELDEFLDKLKS-KDTDGLIIDLRGNGGGSDEYAIELLSYLIPKPIIFYYRDRIGSNKKWVSTIKWSTPKNRFNGPVYV 95 (169)
T ss_dssp HHHHHHHHHHHHH-TTSSEEEEE-TTB--BSHHHHHHHHHCHSSSSEEEEEEEEEEEETTCCHEEEECSSTT-SSSEEEE
T ss_pred HHHHHHHHHHHHH-CCCCEEEEEcccCCCcchHHHHHHHhcccCCCcEEEEecccccccccccCCCCccccccCCCCEEE
Confidence 3445555555544 4578899999 7789999988888876652 2357889
Q ss_pred EEccccchHHHHHHhcCC
Q 028125 95 HCVGFAYHLAGFLLAGGE 112 (213)
Q Consensus 95 ~~~G~aaSaa~~I~~ag~ 112 (213)
++.+.++|+|-+++.+.+
T Consensus 96 L~~~~t~Saae~fa~~lk 113 (169)
T PF03572_consen 96 LTDENTASAAEIFASALK 113 (169)
T ss_dssp EE-TTBBTHHHHHHHHHH
T ss_pred EeCCCCCChhHHHHHHHH
Confidence 999999999988887654
No 160
>cd07562 Peptidase_S41_TRI Tricorn protease; serine protease family S41. The tricorn protease (TRI), a member of the S41 peptidase family and named for its tricorn-like shape, exists only in some archaea and eubacteria. It has been shown to act as a carboxypeptidase, involved in the degradation of proteasomal products to preferentially yield di- and tripeptides, with subsequent and final degradations to free amino acid residues by tricorn interacting factors, F1, F2 and F3. Tricorn is a hexameric D3-symmetric protease of 720kD, and can self-associate further into a giant icosahedral capsid structure containing twenty copies of the complex. Each tricorn peptidase monomer consists of five structural domains: a six-bladed beta-propeller and a seven-bladed beta-propeller that limit access to the active site, the two domains (C1 and C2) that carry the active site residues, and a PDZ-like domain (proposed to be important for substrate recognition) between the C1 and C2 domains. The active sit
Probab=76.08 E-value=20 Score=30.42 Aligned_cols=81 Identities=16% Similarity=0.169 Sum_probs=50.2
Q ss_pred hccCcEEEEccc-cCcchHHHHHHHHHhhccCCCCCceEEEE-eCCCCChhHHHHHHHHHHh------------------
Q 028125 28 LYRERVIFIGQN-IDEEFSNQILATMLYLDSVDDSKRVYMYI-NGPGGDVTPTLAIYDTMQS------------------ 87 (213)
Q Consensus 28 ~~~~~iI~i~G~-I~~~~~~~l~~~l~~l~~~~~~~~I~l~I-NSpGG~v~~~~~I~~~i~~------------------ 87 (213)
+...+|-||.-+ .++.....+++.+. ...+.+.++|-+ +-+||.+. ..|.+.+..
T Consensus 84 ~~~~~igYi~i~~~~~~~~~~~~~~~~---~~~~~~glIiDlR~N~GG~~~--~~l~~~~~~~~~~~~~~r~~~~~~~~p 158 (266)
T cd07562 84 LSDGRIGYVHIPDMGDDGFAEFLRDLL---AEVDKDGLIIDVRFNGGGNVA--DLLLDFLSRRRYGYDIPRGGGKPVTYP 158 (266)
T ss_pred hcCCcEEEEEeCCCChHHHHHHHHHHH---hcCCCceEEEEecCCCCCcHH--HHHHHHhCCCceEEEccCCCCCCCCCc
Confidence 334566665422 23334445555544 222378899988 55777743 344444421
Q ss_pred ---cCCCeEEEEccccchHHHHHHhcCCC
Q 028125 88 ---LKSPVGTHCVGFAYHLAGFLLAGGEK 113 (213)
Q Consensus 88 ---~~~~v~t~~~G~aaSaa~~I~~ag~~ 113 (213)
...||+..+.+.++|+|-+.+.+.+.
T Consensus 159 ~~~~~~pv~vL~~~~t~SaaE~~a~~lk~ 187 (266)
T cd07562 159 SGRWRGPVVVLVNEGSASDAEIFAYGFRA 187 (266)
T ss_pred ccccCCCEEEEECCCCCchHHHHHHHHHH
Confidence 24699999999999999988886643
No 161
>cd07563 Peptidase_S41_IRBP Interphotoreceptor retinoid-binding protein; serine protease family S41. Interphotoreceptor retinoid-binding protein (IRBP) is a homolog of the S41 protease, C-terminal processing peptidase (CTPase) family. It is thought to facilitate the compartmentalization of the visual cycle that requires poorly soluble and potentially toxic retinoids to cross the aqueous subretinal space between the photoreceptors and the retinal pigment epithelium (RPE). IRBP is secreted by photoreceptors into the interphotoreceptor matrix (IPM) where it is rapidly turned over by a combination of RPE and photoreceptor endocytosis. It is the most abundant soluble protein component of the IPM, consisting of homologous modules, each repeat structure arising through the duplication (as in teleost IRBP) or quadruplication (in tetrapods) of an ancient gene, arisen in the early evolution of the vertebrate eye. IRBP has been shown to promote the release of all-trans retinol from photoreceptors
Probab=74.56 E-value=22 Score=29.82 Aligned_cols=53 Identities=9% Similarity=0.078 Sum_probs=40.2
Q ss_pred CCceEEEE-eCCCCChhHHHHHHHHHHh---------------------------------cCCCeEEEEccccchHHHH
Q 028125 61 SKRVYMYI-NGPGGDVTPTLAIYDTMQS---------------------------------LKSPVGTHCVGFAYHLAGF 106 (213)
Q Consensus 61 ~~~I~l~I-NSpGG~v~~~~~I~~~i~~---------------------------------~~~~v~t~~~G~aaSaa~~ 106 (213)
.+.++|-+ +.+||....+..|...+-. .+.||+..+.+.++|+|-.
T Consensus 95 ~~~LIIDLR~N~GG~~~~~~~l~s~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~vL~~~~T~SaaE~ 174 (250)
T cd07563 95 TDALIIDLRYNGGGSDSLVAYLASYFTDEDKPVHLYTIYKRPGNTTTELWTLPVVPGGRYGYTKPVYVLTSPVTFSAAEE 174 (250)
T ss_pred CCeEEEEECCCCCCCHHHHHHHHHHcCCCCCcEEEEEEEECCCCCCcccceeeecCCCcccCCCCEEEEeCCCcCcHHHH
Confidence 37788877 6688999888888877751 1247888888999999988
Q ss_pred HHhcCCC
Q 028125 107 LLAGGEK 113 (213)
Q Consensus 107 I~~ag~~ 113 (213)
.+.+.+.
T Consensus 175 ~a~~lk~ 181 (250)
T cd07563 175 FAYALKQ 181 (250)
T ss_pred HHHHHHh
Confidence 8876643
No 162
>PF09675 Chlamy_scaf: Chlamydia-phage Chp2 scaffold (Chlamy_scaf); InterPro: IPR014131 Members of this entry are encoded by genes in chlamydiaphage such as Vp3. These viruses have around eight genes and infect obligately intracellular bacterial pathogens of the genus Chlamydia. This protein is annotated as VP3 or structural protein (as if a protein of mature viral particles), however, it is displaced from procapsids as DNA is packaged, and therefore is more correctly described as a scaffolding protein.
Probab=73.39 E-value=31 Score=25.75 Aligned_cols=58 Identities=14% Similarity=0.178 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHH---HHHHHhCCCHHHHHHHhcCCceeCHHHHHHcCCceEecCCcc
Q 028125 139 DIRNEADELLRVRDYIFK---ELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRIIRPPR 198 (213)
Q Consensus 139 d~~~~~~~l~~~~~~~~~---~~a~~tg~~~~~i~~~~~~~~~~sa~EA~~~GLiD~I~~~~~ 198 (213)
|..+....+.+-.+.|.. .+.++.+.++.+.-+.+++.. ..+|++++||.+.-.+...
T Consensus 32 DyqeAln~V~e~~eaFd~LPa~iRe~F~N~P~efl~f~~dp~--N~ee~~~Lgl~~~~~~~~a 92 (114)
T PF09675_consen 32 DYQEALNMVAEANEAFDELPAHIRERFNNDPEEFLEFLNDPK--NYEEAIKLGLLEPEETSRA 92 (114)
T ss_pred hHHHHHHHHHHHHHHHHHchHHHHHHhCCCHHHHHHHHhCcc--CHHHHHHhccccCcccccc
Confidence 333333334444444544 366778888888888776544 6799999999986554443
No 163
>PLN00125 Succinyl-CoA ligase [GDP-forming] subunit alpha
Probab=72.95 E-value=11 Score=33.11 Aligned_cols=65 Identities=11% Similarity=0.105 Sum_probs=51.2
Q ss_pred cEEEEccc--cCcchHHHHHHHHHhhccCCCCCceEEEEeCCCCChhHHHHHHHHHHhcCCCeEEEEccccc
Q 028125 32 RVIFIGQN--IDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAY 101 (213)
Q Consensus 32 ~iI~i~G~--I~~~~~~~l~~~l~~l~~~~~~~~I~l~INSpGG~v~~~~~I~~~i~~~~~~v~t~~~G~aa 101 (213)
++|.+..+ .+-. +.+-|.++.+++..+.|.||+.+-|-.+.++..+.++.+. ++||+++..|..+
T Consensus 179 ~~VS~Gn~~~adv~----~~d~L~yl~~Dp~T~~I~ly~E~~G~~~~d~~~f~~aa~~-~KPVV~lk~Grs~ 245 (300)
T PLN00125 179 TCVGIGGDPFNGTN----FVDCLEKFVKDPQTEGIILIGEIGGTAEEDAAAFIKESGT-EKPVVAFIAGLTA 245 (300)
T ss_pred EEEEeCCCCCCCCC----HHHHHHHHhhCCCCcEEEEEeccCCchHHHHHHHHHHhcC-CCCEEEEEecCCC
Confidence 56677766 4443 4555667777888999999999988888889888888664 7999999988875
No 164
>PHA00099 minor capsid protein
Probab=71.37 E-value=33 Score=26.45 Aligned_cols=52 Identities=17% Similarity=0.238 Sum_probs=34.7
Q ss_pred hHHHHHHHHHHHHHHHHHH---HHHHHHhCCCHHHHHHHhcCCceeCHHHHHHcCCc
Q 028125 137 ADDIRNEADELLRVRDYIF---KELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLI 190 (213)
Q Consensus 137 ~~d~~~~~~~l~~~~~~~~---~~~a~~tg~~~~~i~~~~~~~~~~sa~EA~~~GLi 190 (213)
+-|.......+.+.++.|. .-+++++|.+++++...+.+.-- -+||+.+||+
T Consensus 60 p~D~qeAl~~V~~~qeaFdsLPA~iR~~F~NdP~eml~~L~dp~N--ydEa~~LGl~ 114 (147)
T PHA00099 60 PMDYQEALNVVIEAQEAFDSLPAKIRERFGNDPEEMLDFLSDPEN--YDEAKALGLV 114 (147)
T ss_pred chhHHHHHHHHHHHHHHHHhhhHHHHHHhCCCHHHHHHHHcChhh--HHHHHhccee
Confidence 3344444444444444444 34667789999998888876543 4899999999
No 165
>TIGR02763 chlamy_scaf chlamydiaphage internal scaffolding protein. Members of this protein family are encoded by genes in chlamydiaphage such as Chp2, viruses with around eight genes that infect obligately intracellular bacterial pathogens of the genus Chlamydia. This protein, initially designated VP3 (as if a structural protein of mature viral particles), is displaced from procapsids as DNA is packaged, and therefore is described as a scafolding protein.
Probab=70.25 E-value=29 Score=25.68 Aligned_cols=60 Identities=13% Similarity=0.106 Sum_probs=38.5
Q ss_pred hHHHHHHHHHHHHHHHHHH---HHHHHHhCCCHHHHHHHhcCCceeCHHHHHHcCCceEecCCcc
Q 028125 137 ADDIRNEADELLRVRDYIF---KELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRIIRPPR 198 (213)
Q Consensus 137 ~~d~~~~~~~l~~~~~~~~---~~~a~~tg~~~~~i~~~~~~~~~~sa~EA~~~GLiD~I~~~~~ 198 (213)
+-|..+....+.+.++.|. .-+.++.|.+++++.+.+++.-- -+||+.+||.|.-...+.
T Consensus 30 p~D~qeAln~Vie~~eaFdsLPAkvRe~FgNdPeeml~~L~d~~n--yde~~algll~~e~~~~a 92 (114)
T TIGR02763 30 PLDYQEALNIVIEGEEAFDSLPAKVRENFGNDPEEMLSWLEDEAN--YDEVEALGLLDPETKIRA 92 (114)
T ss_pred chhHHHHHHHHHHHHHHHHHhhHHHHHHhCCCHHHHHHHHhChhh--HHHHHHhccccccccccc
Confidence 3444444444444444444 44677889999999888875443 378999999996654433
No 166
>PTZ00187 succinyl-CoA synthetase alpha subunit; Provisional
Probab=65.84 E-value=20 Score=31.74 Aligned_cols=67 Identities=10% Similarity=0.148 Sum_probs=47.5
Q ss_pred cCcEEEEcccc--CcchHHHHHHHHHhhccCCCCCceEEEEeCCCCChhHHHHHHHHHHhcCCCeEEEEccccc
Q 028125 30 RERVIFIGQNI--DEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAY 101 (213)
Q Consensus 30 ~~~iI~i~G~I--~~~~~~~l~~~l~~l~~~~~~~~I~l~INSpGG~v~~~~~I~~~i~~~~~~v~t~~~G~aa 101 (213)
...+|-+.+.- +- .+.+-|.++.+++..+.|.+++-.-|-.-.++....+. ...++||+++..|..+
T Consensus 196 ~S~~VsiGnd~~~g~----~~~D~L~~~~~Dp~T~~Ivl~~E~gG~~e~~aa~fi~~-~~~~KPVVa~~aGrsa 264 (317)
T PTZ00187 196 QSTCVGIGGDPFNGT----NFIDCLKLFLNDPETEGIILIGEIGGTAEEEAAEWIKN-NPIKKPVVSFIAGITA 264 (317)
T ss_pred EEEEEEeCCCCCCCC----CHHHHHHHHhhCCCccEEEEEEecCCchhHHHHHHHHh-hcCCCcEEEEEecCCC
Confidence 34567777763 32 24555666677788999999999877776666665555 3356899999988876
No 167
>COG0777 AccD Acetyl-CoA carboxylase beta subunit [Lipid metabolism]
Probab=62.03 E-value=37 Score=29.60 Aligned_cols=118 Identities=13% Similarity=0.094 Sum_probs=75.1
Q ss_pred CCeeeeecCCCC-CCchhhhHHhh--ccCcEEEEccccCcc-------------------hHHHHHHHHHhhccCCCCCc
Q 028125 6 TPKVLYRTPGEG-SWQWVDLWNAL--YRERVIFIGQNIDEE-------------------FSNQILATMLYLDSVDDSKR 63 (213)
Q Consensus 6 ~~~~~~~~~~~~-~~~~~~~~~~~--~~~~iI~i~G~I~~~-------------------~~~~l~~~l~~l~~~~~~~~ 63 (213)
.|+=|+.++..+ +.+|..-+.+- .++.+|.-.|.|+.- .-+.|+..+.++-.+ .-+
T Consensus 82 ~~~dPL~F~d~k~Y~~rL~~a~~~tg~~davvtg~g~i~G~pvv~av~df~FmgGSmGsVvGeki~ra~E~A~e~--k~P 159 (294)
T COG0777 82 EPKDPLKFPDSKKYKDRLEAARKKTGLDDAVVTGEGTINGLPVVLAVMDFAFMGGSMGSVVGEKITRAIERAIED--KLP 159 (294)
T ss_pred CcCCcccCCcchhhHHHHHHHHhhcCCCcceEEEeeEECCeEEEEEEEeccccccchhHHHHHHHHHHHHHHHHh--CCC
Confidence 356677777643 34455444433 466778777777652 247888888765332 457
Q ss_pred eEEEEeCCCCChhHHHH----------HHHHHHhcCCCeEEEEc-----cccchHHHHHHhcCCCCcEeeccCCeEEEeC
Q 028125 64 VYMYINGPGGDVTPTLA----------IYDTMQSLKSPVGTHCV-----GFAYHLAGFLLAGGEKGNRSAMPLSRIALDS 128 (213)
Q Consensus 64 I~l~INSpGG~v~~~~~----------I~~~i~~~~~~v~t~~~-----G~aaSaa~~I~~ag~~~~r~~~p~s~i~iH~ 128 (213)
++++-.|-|-.+.++.- -.+.++..+.|+++|.. |..||-| +.||. .++-|.+.|+|..
T Consensus 160 ~v~f~aSGGARMQEg~lSLMQMaktsaAl~~l~ea~lpyIsVLt~PTtGGVsASfA----~lGDi--~iAEP~AlIGFAG 233 (294)
T COG0777 160 LVLFSASGGARMQEGILSLMQMAKTSAALKRLSEAGLPYISVLTDPTTGGVSASFA----MLGDI--IIAEPGALIGFAG 233 (294)
T ss_pred EEEEecCcchhHhHHHHHHHHHHHHHHHHHHHHhcCCceEEEecCCCccchhHhHH----hccCe--eecCcccccccCc
Confidence 77777776665555441 22344445579888884 5555544 45887 8999999999888
Q ss_pred CCc
Q 028125 129 PAG 131 (213)
Q Consensus 129 p~~ 131 (213)
|..
T Consensus 234 pRV 236 (294)
T COG0777 234 PRV 236 (294)
T ss_pred chh
Confidence 865
No 168
>COG0757 AroQ 3-dehydroquinate dehydratase II [Amino acid transport and metabolism]
Probab=61.07 E-value=27 Score=27.29 Aligned_cols=46 Identities=17% Similarity=0.263 Sum_probs=32.8
Q ss_pred HHHHHHHhhccCCCCCceEEEEeCCCCChhHHHHHHHHHHhcCCCeEEEEc
Q 028125 47 QILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCV 97 (213)
Q Consensus 47 ~l~~~l~~l~~~~~~~~I~l~INSpGG~v~~~~~I~~~i~~~~~~v~t~~~ 97 (213)
.+++.+.....+ . ..|.|| ||+.--.+.+|.|+|+....|++=+=.
T Consensus 55 ~Lid~Ihea~~~--~--~~IvIN-pga~THTSvAlrDAi~av~iP~vEVHl 100 (146)
T COG0757 55 ELIDWIHEARGK--A--GDIVIN-PGAYTHTSVALRDAIAAVSIPVVEVHL 100 (146)
T ss_pred HHHHHHHHhhcc--C--CeEEEc-CccchhhHHHHHHHHHhcCCCEEEEEe
Confidence 456666543322 1 226666 999999999999999999999776543
No 169
>PF13607 Succ_CoA_lig: Succinyl-CoA ligase like flavodoxin domain; PDB: 2CSU_A.
Probab=60.93 E-value=24 Score=27.29 Aligned_cols=61 Identities=20% Similarity=0.353 Sum_probs=34.9
Q ss_pred CcEEEEccccCcchHHHHHHHHHhhccCCCCCceEEEEeCCCCChhHHHHHHHHHHhcC--CCeEEEEccc
Q 028125 31 ERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLK--SPVGTHCVGF 99 (213)
Q Consensus 31 ~~iI~i~G~I~~~~~~~l~~~l~~l~~~~~~~~I~l~INSpGG~v~~~~~I~~~i~~~~--~~v~t~~~G~ 99 (213)
..+|.+..+.+-. +.+-|.++..++..+.|.+|+.+-+- +..+.++++... +||+++-.|.
T Consensus 29 s~~vs~Gn~~dv~----~~d~l~~~~~D~~t~~I~ly~E~~~d----~~~f~~~~~~a~~~KPVv~lk~Gr 91 (138)
T PF13607_consen 29 SYVVSVGNEADVD----FADLLEYLAEDPDTRVIVLYLEGIGD----GRRFLEAARRAARRKPVVVLKAGR 91 (138)
T ss_dssp SEEEE-TT-SSS-----HHHHHHHHCT-SS--EEEEEES--S-----HHHHHHHHHHHCCCS-EEEEE---
T ss_pred eEEEEeCccccCC----HHHHHHHHhcCCCCCEEEEEccCCCC----HHHHHHHHHHHhcCCCEEEEeCCC
Confidence 3566666666443 34445666677789999999997543 677777777765 8999999887
No 170
>TIGR02886 spore_II_AA anti-sigma F factor antagonist. The anti-sigma F factor antagonist, also called stage II sporulation protein AA, is a protein universal among endospore-forming bacteria, all of which belong to the Firmcutes
Probab=56.71 E-value=19 Score=25.69 Aligned_cols=36 Identities=6% Similarity=0.056 Sum_probs=26.7
Q ss_pred CcEEEEccccCcchHHHHHHHHHhhccCCCCCceEE
Q 028125 31 ERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYM 66 (213)
Q Consensus 31 ~~iI~i~G~I~~~~~~~l~~~l~~l~~~~~~~~I~l 66 (213)
..++.+.|+++-.+++.+.+++..+-...+.+.+.|
T Consensus 9 ~~vi~l~G~L~f~~~~~~~~~l~~~~~~~~~~~vil 44 (106)
T TIGR02886 9 VLIVRLSGELDHHTAERVRRKIDDAIERRPIKHLIL 44 (106)
T ss_pred EEEEEEecccchhhHHHHHHHHHHHHHhCCCCEEEE
Confidence 357889999999999999998876533233556666
No 171
>KOG3877 consensus NADH:ubiquinone oxidoreductase, NDUFA10/42kDa subunit [Energy production and conversion]
Probab=56.23 E-value=24 Score=31.19 Aligned_cols=45 Identities=16% Similarity=0.391 Sum_probs=30.8
Q ss_pred cCcEEEEccccCcc---hHHHHHHHHHhhccCCCCCceEEEEeCCCCCh
Q 028125 30 RERVIFIGQNIDEE---FSNQILATMLYLDSVDDSKRVYMYINGPGGDV 75 (213)
Q Consensus 30 ~~~iI~i~G~I~~~---~~~~l~~~l~~l~~~~~~~~I~l~INSpGG~v 75 (213)
+.++|.+.|.|... .++.+.++|-.. .-...+.=.+++||.|++.
T Consensus 70 nSkvI~VeGnI~sGK~klAKelAe~Lgf~-hfP~~~~d~iyvdsyg~D~ 117 (393)
T KOG3877|consen 70 NSKVIVVEGNIGSGKTKLAKELAEQLGFV-HFPEFRMDDIYVDSYGNDL 117 (393)
T ss_pred cceEEEEeCCcccCchhHHHHHHHHhCCc-ccccccccceeecccCccc
Confidence 44789999999875 356666666422 2233455678999999874
No 172
>TIGR00377 ant_ant_sig anti-anti-sigma factor. This superfamily includes small (105-125 residue) proteins related to SpoIIAA of Bacillus subtilis, an anti-anti-sigma factor. SpoIIAA can bind to and inhibit the anti-sigma F factor SpoIIAB. Also, it can be phosphorylated by SpoIIAB on a Ser residue at position 59 of the seed alignment. A similar arrangement is inferred for RsbV, an anti-anti-sigma factor for sigma B. This Ser is fairly well conserved within a motif resembling MXS[STA]G[VIL]X[VIL][VILF] among homologous known or predicted anti-anti-sigma factors. Regions similar to SpoIIAA and apparently homologous, but differing considerably near the phosphorlated Ser of SpoIIAA, appear in a single copy in several longer proteins.
Probab=56.23 E-value=68 Score=22.56 Aligned_cols=36 Identities=3% Similarity=0.078 Sum_probs=26.0
Q ss_pred CcEEEEccccCcchHHHHHHHHHhhccCCCCCceEE
Q 028125 31 ERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYM 66 (213)
Q Consensus 31 ~~iI~i~G~I~~~~~~~l~~~l~~l~~~~~~~~I~l 66 (213)
.-++.+.|.++-..+..+.+.+..+......+.|.|
T Consensus 13 ~~vi~~~G~l~~~~~~~~~~~l~~~~~~~~~~~vvi 48 (108)
T TIGR00377 13 VVIVRLSGELDAHTAPLLREKVTPAAERTGPRPIVL 48 (108)
T ss_pred EEEEEEecccccccHHHHHHHHHHHHHhcCCCeEEE
Confidence 356789999999988888888876544333555666
No 173
>COG0074 SucD Succinyl-CoA synthetase, alpha subunit [Energy production and conversion]
Probab=53.39 E-value=45 Score=29.16 Aligned_cols=79 Identities=14% Similarity=0.180 Sum_probs=48.8
Q ss_pred cEEEEccccCcchHHHHHHHHHhhccCCCCCceEEEEeCCCCChhHHH-HHHHHHHhcCCCeEEEEccccchHHHHHHhc
Q 028125 32 RVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTL-AIYDTMQSLKSPVGTHCVGFAYHLAGFLLAG 110 (213)
Q Consensus 32 ~iI~i~G~I~~~~~~~l~~~l~~l~~~~~~~~I~l~INSpGG~v~~~~-~I~~~i~~~~~~v~t~~~G~aaSaa~~I~~a 110 (213)
..|=|.|. +-.-..+++.|..++++ +.....+.|-=+||...+-- ..+.. +..++||++++.|..+
T Consensus 174 ~~IGiGGD--pi~Gt~fid~L~~fe~D-p~T~~ivmiGEiGG~aEe~AA~~i~~-~~~~KPVVa~iaG~ta--------- 240 (293)
T COG0074 174 TAIGIGGD--PIPGTSFIDALEMFEAD-PETEAIVMIGEIGGPAEEEAAEYIKA-NATRKPVVAYIAGRTA--------- 240 (293)
T ss_pred EEEEeCCC--CcCCccHHHHHHHHhcC-ccccEEEEEecCCCcHHHHHHHHHHH-hccCCCEEEEEeccCC---------
Confidence 44556554 11223467777766554 45667888999999864422 22222 3455899999999988
Q ss_pred CCCCcEeeccCCeE
Q 028125 111 GEKGNRSAMPLSRI 124 (213)
Q Consensus 111 g~~~~r~~~p~s~i 124 (213)
.+++|...-.+.+
T Consensus 241 -p~gkrmGhaGaiv 253 (293)
T COG0074 241 -PEGKRMGHAGAIV 253 (293)
T ss_pred -Cccchhhhhhhhh
Confidence 4455655555554
No 174
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=53.05 E-value=63 Score=28.11 Aligned_cols=88 Identities=11% Similarity=0.089 Sum_probs=55.6
Q ss_pred CcEEEEccccC-cchHHHHHHHHHhhccCCCCCceEEEEeCC-CCC-----hhHHHHHHHHHHhcCCCeEEEEccccchH
Q 028125 31 ERVIFIGQNID-EEFSNQILATMLYLDSVDDSKRVYMYINGP-GGD-----VTPTLAIYDTMQSLKSPVGTHCVGFAYHL 103 (213)
Q Consensus 31 ~~iI~i~G~I~-~~~~~~l~~~l~~l~~~~~~~~I~l~INSp-GG~-----v~~~~~I~~~i~~~~~~v~t~~~G~aaSa 103 (213)
-.++.+.-.+. +.....++++|..++.......+.+.|=.- ||+ ++.-..+..+|..++.||++=+...--.
T Consensus 42 ~~~~~~p~~vQG~~A~~~I~~al~~~~~~~~~~~~Dviii~RGGGs~eDL~~FN~e~varai~~~~~PvisaIGHe~D~- 120 (319)
T PF02601_consen 42 VEIILYPASVQGEGAAASIVSALRKANEMGQADDFDVIIIIRGGGSIEDLWAFNDEEVARAIAASPIPVISAIGHETDF- 120 (319)
T ss_pred cEEEEEeccccccchHHHHHHHHHHHHhccccccccEEEEecCCCChHHhcccChHHHHHHHHhCCCCEEEecCCCCCc-
Confidence 34444444453 455688999999886544222333333333 444 4677899999999999999877554333
Q ss_pred HHHHHhcCCCCcEeeccCC
Q 028125 104 AGFLLAGGEKGNRSAMPLS 122 (213)
Q Consensus 104 a~~I~~ag~~~~r~~~p~s 122 (213)
++.=..+|. |...|.+
T Consensus 121 -ti~D~vAd~--ra~TPta 136 (319)
T PF02601_consen 121 -TIADFVADL--RAPTPTA 136 (319)
T ss_pred -hHHHHHHHh--hCCCHHH
Confidence 444556666 7777764
No 175
>PLN02727 NAD kinase
Probab=52.60 E-value=66 Score=32.80 Aligned_cols=49 Identities=10% Similarity=0.056 Sum_probs=34.9
Q ss_pred CCceEEEEeCCCC-ChhHHHHHHHHH-HhcCCCeEEEEccccchHHHHHHh
Q 028125 61 SKRVYMYINGPGG-DVTPTLAIYDTM-QSLKSPVGTHCVGFAYHLAGFLLA 109 (213)
Q Consensus 61 ~~~I~l~INSpGG-~v~~~~~I~~~i-~~~~~~v~t~~~G~aaSaa~~I~~ 109 (213)
..-+++-+++++. +......+.+.+ ...+.||.++|..-+-++|+++++
T Consensus 311 L~yVhIPVs~~~apt~EqVe~fa~~l~~slpkPVLvHCKSGarRAGamvA~ 361 (986)
T PLN02727 311 IEVVKIPVEVRTAPSAEQVEKFASLVSDSSKKPIYLHSKEGVWRTSAMVSR 361 (986)
T ss_pred CeEEEeecCCCCCCCHHHHHHHHHHHHhhcCCCEEEECCCCCchHHHHHHH
Confidence 4556666666554 678888888999 668899999998666555554444
No 176
>PRK06091 membrane protein FdrA; Validated
Probab=49.72 E-value=44 Score=31.95 Aligned_cols=70 Identities=19% Similarity=0.283 Sum_probs=48.9
Q ss_pred cEEEEccc-cCcch-HHHHHHHHHhhccCCCCCceEEEEeCCCCChhHHHHHHHHHHhcCCCeEEEEccccchH
Q 028125 32 RVIFIGQN-IDEEF-SNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHL 103 (213)
Q Consensus 32 ~iI~i~G~-I~~~~-~~~l~~~l~~l~~~~~~~~I~l~INSpGG~v~~~~~I~~~i~~~~~~v~t~~~G~aaSa 103 (213)
++|.+.+. +.++. .-.+.+.|.+|..++..+.|.+|+-=|+-.+.. .+.++++..++||+++..|....+
T Consensus 222 ~~Vs~Gn~Dls~~~ggi~~~D~L~~L~~DP~TkvIvly~kppaE~v~~--~fl~aar~~~KPVVvlk~Grs~~g 293 (555)
T PRK06091 222 HAIGLGGRDLSAEVGGISALTALEMLSADEKSEVIAFVSKPPAEAVRL--KIINAMKATGKPVVALFLGYTPAV 293 (555)
T ss_pred EEEECCCCccccccCCCCHHHHHHHHhhCCCCcEEEEEEecCchHHHH--HHHHHHhhCCCCEEEEEecCCchh
Confidence 45666666 11111 123456667777778889999998777766764 888888889999999998875543
No 177
>cd01455 vWA_F11C1-5a_type Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A
Probab=48.42 E-value=1.2e+02 Score=24.96 Aligned_cols=74 Identities=7% Similarity=-0.031 Sum_probs=45.4
Q ss_pred hhHHhhccCcEEEEccccCcchHHHHHHHHHhhc-cCCCCCceEEEE---eCCCCChhHHHHHHHHHHhcCCCeEEEEcc
Q 028125 23 DLWNALYRERVIFIGQNIDEEFSNQILATMLYLD-SVDDSKRVYMYI---NGPGGDVTPTLAIYDTMQSLKSPVGTHCVG 98 (213)
Q Consensus 23 ~~~~~~~~~~iI~i~G~I~~~~~~~l~~~l~~l~-~~~~~~~I~l~I---NSpGG~v~~~~~I~~~i~~~~~~v~t~~~G 98 (213)
+....++.+.-+-+.| +.+++.+.-.+..++ ..+..+.+.|.+ |...|.+.+-..-...-+..+++|+|+..|
T Consensus 75 ~~l~~~l~~~q~g~ag---~~TadAi~~av~rl~~~~~a~~kvvILLTDG~n~~~~i~P~~aAa~lA~~~gV~iytIgiG 151 (191)
T cd01455 75 ETLKMMHAHSQFCWSG---DHTVEATEFAIKELAAKEDFDEAIVIVLSDANLERYGIQPKKLADALAREPNVNAFVIFIG 151 (191)
T ss_pred HHHHHHHHhcccCccC---ccHHHHHHHHHHHHHhcCcCCCcEEEEEeCCCcCCCCCChHHHHHHHHHhCCCEEEEEEec
Confidence 4455556555454444 566677777777775 444445566666 333455665543345556778899999887
Q ss_pred c
Q 028125 99 F 99 (213)
Q Consensus 99 ~ 99 (213)
.
T Consensus 152 ~ 152 (191)
T cd01455 152 S 152 (191)
T ss_pred C
Confidence 6
No 178
>COG1512 Beta-propeller domains of methanol dehydrogenase type [General function prediction only]
Probab=46.72 E-value=33 Score=29.76 Aligned_cols=56 Identities=11% Similarity=0.209 Sum_probs=46.2
Q ss_pred ccCcEEEEccccCcchHHHHHHHHHhhccCCCCCceEEEEeCCCCCh--hHHHHHHHH
Q 028125 29 YRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDV--TPTLAIYDT 84 (213)
Q Consensus 29 ~~~~iI~i~G~I~~~~~~~l~~~l~~l~~~~~~~~I~l~INSpGG~v--~~~~~I~~~ 84 (213)
+..++.-..+.++......+.++|..|+++...+-+++.|.|-+|+- ..+..+++.
T Consensus 32 ~~~~V~D~t~~Ls~~e~~~Leq~l~~L~~kt~~QiaVv~vpSt~g~~IE~ya~rlfd~ 89 (271)
T COG1512 32 LSQRVTDLTGTLSAAERGALEQQLADLEQKTGAQIAVVTVPSTGGETIEQYATRLFDK 89 (271)
T ss_pred ccceeeeccccCChhhHHHHHHHHHHHHhccCCeEEEEEecCCCCCCHHHHHHHHHHh
Confidence 34577788899999999999999999999988899999999999875 334555665
No 179
>COG1366 SpoIIAA Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) [Signal transduction mechanisms]
Probab=44.29 E-value=34 Score=25.06 Aligned_cols=41 Identities=17% Similarity=0.201 Sum_probs=28.0
Q ss_pred cEEEEccccCcchHHHHHHHHHhhccCCCCCceEEEEeCCCCC
Q 028125 32 RVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGD 74 (213)
Q Consensus 32 ~iI~i~G~I~~~~~~~l~~~l~~l~~~~~~~~I~l~INSpGG~ 74 (213)
-++.+.|+||...+..+.+.+.........+. +.||--|=+
T Consensus 15 ~vl~l~G~lD~~~a~~~~e~~~~~~~~~~~~~--ivIDls~v~ 55 (117)
T COG1366 15 LVLPLIGELDAARAPALKETLLEVIAASGARG--LVIDLSGVD 55 (117)
T ss_pred EEEEeeEEEchHHHHHHHHHHHHHHhcCCCcE--EEEECCCCc
Confidence 37889999999999888888874434333333 555555533
No 180
>PF00549 Ligase_CoA: CoA-ligase; InterPro: IPR005811 This entry represents a domain found in both the alpha and beta chains of succinyl-CoA synthase (6.2.1.4 from EC (GDP-forming) and 6.2.1.5 from EC (ADP-forming)) [, ]. This domain can also be found in ATP citrate synthase (2.3.3.8 from EC) and malate-CoA ligase (6.2.1.9 from EC). Some members of the domain utilise ATP others use GTP.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3DMY_B 3MWE_B 3PFF_A 3MWD_B 2YV1_A 1EUC_A 2FP4_A 1EUD_A 2FPI_A 2FPG_A ....
Probab=44.21 E-value=65 Score=25.41 Aligned_cols=56 Identities=16% Similarity=0.177 Sum_probs=38.2
Q ss_pred HHHHHHHhhccCCCCCceEEEEeCC-CCChhHHHHHHHHHHhcC-----CCeEEEEccccch
Q 028125 47 QILATMLYLDSVDDSKRVYMYINGP-GGDVTPTLAIYDTMQSLK-----SPVGTHCVGFAYH 102 (213)
Q Consensus 47 ~l~~~l~~l~~~~~~~~I~l~INSp-GG~v~~~~~I~~~i~~~~-----~~v~t~~~G~aaS 102 (213)
.+.+.|..+.++++++.|.|.+=-- |..-+.+..+..+++..+ .||++++.|..+-
T Consensus 60 ~~~~~l~~~~~Dp~v~vIlvd~~~G~g~~~~~A~~l~~a~~~~~~~~~~~pvVa~v~GT~~d 121 (153)
T PF00549_consen 60 TRNEALEIEAADPEVKVILVDIVGGIGSCEDPAAGLIPAIKEAKAEGRKKPVVARVCGTNAD 121 (153)
T ss_dssp HHHHHHHHHHTSTTESEEEEEEESSSSSHHHHHHHHHHHHSHCTHTTT-SEEEEEEESTTCH
T ss_pred HHHHHHHHHhcCCCccEEEEEeccccCchHHHHHHHHHHHHhccccCCCCcEEEEeeeecCC
Confidence 4455555555556666666555433 445677888999998864 6899999888775
No 181
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=42.38 E-value=1.7e+02 Score=23.08 Aligned_cols=81 Identities=20% Similarity=0.220 Sum_probs=49.8
Q ss_pred eeeecCCCCCCchhhhHHhhcc------CcEEEEccccCcchHHHHHHHHHhhccCCCCCceEEEEeCCC-CChhHHHHH
Q 028125 9 VLYRTPGEGSWQWVDLWNALYR------ERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPG-GDVTPTLAI 81 (213)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~------~~iI~i~G~I~~~~~~~l~~~l~~l~~~~~~~~I~l~INSpG-G~v~~~~~I 81 (213)
+|.+.+| .|+...+++ .++.++.|. ++..+.+.+.|. .. ...+.+.-..+| -+-.+...|
T Consensus 27 ~~~rv~g------~dl~~~l~~~~~~~~~~ifllG~~--~~~~~~~~~~l~---~~--yP~l~ivg~~~g~f~~~~~~~i 93 (172)
T PF03808_consen 27 LPERVTG------SDLFPDLLRRAEQRGKRIFLLGGS--EEVLEKAAANLR---RR--YPGLRIVGYHHGYFDEEEEEAI 93 (172)
T ss_pred CCcccCH------HHHHHHHHHHHHHcCCeEEEEeCC--HHHHHHHHHHHH---HH--CCCeEEEEecCCCCChhhHHHH
Confidence 3455566 455554432 344445544 555666666665 22 334555543333 477789999
Q ss_pred HHHHHhcCCCeEEEEccccch
Q 028125 82 YDTMQSLKSPVGTHCVGFAYH 102 (213)
Q Consensus 82 ~~~i~~~~~~v~t~~~G~aaS 102 (213)
.+.|+.++..++-+.+|.==.
T Consensus 94 ~~~I~~~~pdiv~vglG~PkQ 114 (172)
T PF03808_consen 94 INRINASGPDIVFVGLGAPKQ 114 (172)
T ss_pred HHHHHHcCCCEEEEECCCCHH
Confidence 999999999998888775443
No 182
>COG3904 Predicted periplasmic protein [Function unknown]
Probab=42.34 E-value=98 Score=26.07 Aligned_cols=54 Identities=17% Similarity=0.245 Sum_probs=42.2
Q ss_pred ccccCcchHHHHHHHHHhhccCCCCCceEEEEeCCCCChhHHHHHHHHHHhcCCCeEE
Q 028125 37 GQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGT 94 (213)
Q Consensus 37 ~G~I~~~~~~~l~~~l~~l~~~~~~~~I~l~INSpGG~v~~~~~I~~~i~~~~~~v~t 94 (213)
.+.|-..+...+..++..+ ......+.+|+||+.++++..+-+.+++.+.-+.+
T Consensus 54 tPaiaaG~~~el~r~~~~~----dgr~l~VvVse~~a~~da~sal~~lir~~G~y~~t 107 (245)
T COG3904 54 TPAIAAGTPAELKRTLKTL----DGRQLPVVVSEPGANVDAASALGRLIRKAGLYIAT 107 (245)
T ss_pred CCcccCCCHHHHHHhhhhc----cCceeeEEEcCCCCCccHHHHHHHHHhccCceeEE
Confidence 4456665666666666543 25578899999999999999999999999987777
No 183
>PRK13015 3-dehydroquinate dehydratase; Reviewed
Probab=42.16 E-value=44 Score=26.29 Aligned_cols=48 Identities=23% Similarity=0.338 Sum_probs=33.6
Q ss_pred HHHHHHHHhhccCCCCCceEEEEeCCCCChhHHHHHHHHHHhcCCCeEEEEcc
Q 028125 46 NQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVG 98 (213)
Q Consensus 46 ~~l~~~l~~l~~~~~~~~I~l~INSpGG~v~~~~~I~~~i~~~~~~v~t~~~G 98 (213)
..+++.|... .++.+. +.|| ||+....+.+|.|+|+..+.|++=+=..
T Consensus 55 GelId~i~~a--~~~~dg--iIIN-pga~THtSiAl~DAl~~~~~P~VEVHiS 102 (146)
T PRK13015 55 GELIDWIHEA--RGDVAG--IVIN-PGAYTHTSVAIRDALAALELPVIEVHIS 102 (146)
T ss_pred HHHHHHHHHh--hhcCCE--EEEc-chHHhhhHHHHHHHHHcCCCCEEEEEcC
Confidence 3466666543 123445 3444 9999999999999999999997665433
No 184
>PRK05395 3-dehydroquinate dehydratase; Provisional
Probab=41.74 E-value=52 Score=25.88 Aligned_cols=47 Identities=15% Similarity=0.333 Sum_probs=33.2
Q ss_pred HHHHHHHHhhccCCCCCceEEEEeCCCCChhHHHHHHHHHHhcCCCeEEEEc
Q 028125 46 NQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCV 97 (213)
Q Consensus 46 ~~l~~~l~~l~~~~~~~~I~l~INSpGG~v~~~~~I~~~i~~~~~~v~t~~~ 97 (213)
..+++.|.... ++.+.|.| -||+....+.+|.|+|+..+.|++=+=.
T Consensus 55 GelId~I~~a~--~~~dgiiI---Npga~THtSiAl~DAl~~~~~P~VEVHi 101 (146)
T PRK05395 55 GELIDRIHEAR--DGADGIII---NPGAYTHTSVALRDALAAVSIPVIEVHL 101 (146)
T ss_pred HHHHHHHHhcc--cCCcEEEE---CchHHHHHHHHHHHHHHcCCCCEEEEec
Confidence 35667666432 23444433 3999999999999999999999765443
No 185
>KOG3093 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=41.34 E-value=36 Score=27.93 Aligned_cols=45 Identities=31% Similarity=0.350 Sum_probs=33.0
Q ss_pred HHHHHHHHHhhccCCCCCceEEEEeCCCCChhHHHHHHHHHHhcC
Q 028125 45 SNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLK 89 (213)
Q Consensus 45 ~~~l~~~l~~l~~~~~~~~I~l~INSpGG~v~~~~~I~~~i~~~~ 89 (213)
+..+.+++..+..-.+.+.|.+|+|.++|+|+.+.-|-++++.=+
T Consensus 31 s~ai~~kV~e~~~fk~skrvs~YmSm~~~Ev~T~~Ii~~~fq~gK 75 (200)
T KOG3093|consen 31 SEAISKKVLELPWFKNSKRVSIYMSMDKGEVDTGEIIKEAFQDGK 75 (200)
T ss_pred HHHHHHHHHhhHHHHhcCceEEEEecCcccccHHHHHHHHHhcCC
Confidence 455556665544445578999999999999998887777776643
No 186
>PF00681 Plectin: Plectin repeat; InterPro: IPR001101 Plectin may have a role in cross-linking intermediate filaments, in inter-linking intermediate filaments with microtubules and microfilaments and in anchoring intermediate filaments to the plasma and nuclear membranes. Plectin is recruited into hemidesmosomes, multiprotein complexes that facilitate adhesion of epithelia to the basement membrane, thereby providing linkage between the intracellular keratin filaments to the laminins of the extracellular matrix. Plectin binds to hemidesmosomes through association of its actin-binding domain with the first pair of fibronectin type III repeats and a small part of the connecting segment of the integrin-beta4 subunit, the latter (integrin-alpha6,beta4) acting as a receptor for the extracellular matrix component laminin-5. The plectin repeat is also seen in the cell adhesion junction plaque proteins, desmoplakin, envoplakin, and bullous pemphigoid antigen. The domains in plakins show considerable sequence homology. The N terminus consists of a plakin domain containing a number of subdomains with high alpha-helical content, while the central coiled-coil domain is composed of heptad repeats involved in the dimerisation of plakin, and the C terminus contains one or more homologous repeat sequences referred to plectin repeats []. This entry represents the plectin repeats found in the C terminus of plakin proteins.; GO: 0005856 cytoskeleton; PDB: 1LM7_A 1LM5_A.
Probab=41.05 E-value=21 Score=21.88 Aligned_cols=18 Identities=39% Similarity=0.595 Sum_probs=14.8
Q ss_pred CCceeCHHHHHHcCCceE
Q 028125 175 RIKRFGSQEALEYGLIDR 192 (213)
Q Consensus 175 ~~~~~sa~EA~~~GLiD~ 192 (213)
.+..||-+||++.||||.
T Consensus 18 tg~~lsv~~A~~~glId~ 35 (45)
T PF00681_consen 18 TGERLSVEEAIQRGLIDS 35 (45)
T ss_dssp TTEEEEHHHHHHTTSS-H
T ss_pred CCeEEcHHHHHHCCCcCH
Confidence 467799999999999995
No 187
>PF09862 DUF2089: Protein of unknown function (DUF2089); InterPro: IPR018658 This family consists of various hypothetical prokaryotic proteins.
Probab=40.98 E-value=82 Score=23.66 Aligned_cols=54 Identities=22% Similarity=0.281 Sum_probs=31.2
Q ss_pred CCCChHHHHHHHH-HHHHHHHHHHHHHHHHhC---------CCHHHHHHHhcCCceeCHHHHHHc
Q 028125 133 ARGQADDIRNEAD-ELLRVRDYIFKELSRKTG---------QPFEKITKDLSRIKRFGSQEALEY 187 (213)
Q Consensus 133 ~~G~~~d~~~~~~-~l~~~~~~~~~~~a~~tg---------~~~~~i~~~~~~~~~~sa~EA~~~ 187 (213)
..|+.++++.... .+-..+.++.+++.+--. ....+|.+.+.++. +|++||++.
T Consensus 48 ~rGnlKe~e~~lgiSYPTvR~rLd~ii~~lg~~~~~~~~~~~~~~~IL~~L~~Ge-Is~eeA~~~ 111 (113)
T PF09862_consen 48 NRGNLKEMEKELGISYPTVRNRLDKIIEKLGYEEDEEEEEEDERKEILDKLEKGE-ISVEEALEI 111 (113)
T ss_pred hcCCHHHHHHHHCCCcHHHHHHHHHHHHHhCCCCCcccccchhHHHHHHHHHcCC-CCHHHHHHH
Confidence 5788888766543 234445555555544321 22345666666544 799999873
No 188
>smart00250 PLEC Plectin repeat.
Probab=39.94 E-value=19 Score=21.20 Aligned_cols=18 Identities=39% Similarity=0.503 Sum_probs=15.2
Q ss_pred CceeCHHHHHHcCCceEe
Q 028125 176 IKRFGSQEALEYGLIDRI 193 (213)
Q Consensus 176 ~~~~sa~EA~~~GLiD~I 193 (213)
..-+|-.||++.||||..
T Consensus 19 ~~~lsv~eA~~~glid~~ 36 (38)
T smart00250 19 GQKLSVEEALRRGLIDPE 36 (38)
T ss_pred CCCcCHHHHHHcCCCCcc
Confidence 456899999999999963
No 189
>TIGR01088 aroQ 3-dehydroquinate dehydratase, type II. This model specifies the type II enzyme. The type I enzyme, often found as part of a multifunctional protein, is described by TIGR01093.
Probab=39.28 E-value=62 Score=25.30 Aligned_cols=47 Identities=19% Similarity=0.347 Sum_probs=33.1
Q ss_pred HHHHHHHHhhccCCCCCceEEEEeCCCCChhHHHHHHHHHHhcCCCeEEEEc
Q 028125 46 NQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCV 97 (213)
Q Consensus 46 ~~l~~~l~~l~~~~~~~~I~l~INSpGG~v~~~~~I~~~i~~~~~~v~t~~~ 97 (213)
..+++.|.... ++.+.| .|| ||+..-.+.+|.|+|+..+.|++=+=.
T Consensus 53 GelId~i~~a~--~~~dgi--IIN-pga~THtSiAl~DAl~~~~~P~vEVHi 99 (141)
T TIGR01088 53 GQLIDKIHEAE--GQYDGI--IIN-PGALTHTSVALRDALAAVSLPVVEVHL 99 (141)
T ss_pred HHHHHHHHhcc--ccCCEE--EEc-ChHHhhhHHHHHHHHHcCCCCEEEEEc
Confidence 35666666432 224443 344 999999999999999999999765443
No 190
>cd00466 DHQase_II Dehydroquinase (DHQase), type II. Dehydroquinase (or 3-dehydroquinate dehydratase) catalyzes the reversible dehydration of 3-dehydroquinate to form 3-dehydroshikimate. This reaction is part of two metabolic pathways: the biosynthetic shikimate pathway and the catabolic quinate pathway. There are two types of DHQases, which are distinct from each other in amino acid sequence and three-dimensional structure. Type I enzymes usually catalyze the biosynthetic reaction using a syn elimination mechanism. In contrast, type II enzymes, found in the quinate pathway of fungi and in the shikimate pathway of many bacteria, are dodecameric enzymes that employ an anti elimination reaction mechanism.
Probab=39.25 E-value=55 Score=25.54 Aligned_cols=47 Identities=15% Similarity=0.326 Sum_probs=33.3
Q ss_pred HHHHHHHHhhccCCCCCceEEEEeCCCCChhHHHHHHHHHHhcCCCeEEEEc
Q 028125 46 NQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCV 97 (213)
Q Consensus 46 ~~l~~~l~~l~~~~~~~~I~l~INSpGG~v~~~~~I~~~i~~~~~~v~t~~~ 97 (213)
..+++.|.... ++.+.|.| -||+..-.+.+|.|+|+....|++=+=.
T Consensus 53 gelid~I~~a~--~~~dgiII---Npga~THtSvAi~DAl~~~~~P~VEVHi 99 (140)
T cd00466 53 GELIDWIHEAR--DGADGIII---NPGAYTHTSIALRDALAAVSIPVIEVHI 99 (140)
T ss_pred HHHHHHHHHhh--ccCcEEEE---cchHHHHHHHHHHHHHHcCCCCEEEEec
Confidence 35666666432 23445444 3999999999999999999998765443
No 191
>cd07043 STAS_anti-anti-sigma_factors Sulphate Transporter and Anti-Sigma factor antagonist) domain of anti-anti-sigma factors, key regulators of anti-sigma factors by phosphorylation. Anti-anti-sigma factors play an important role in the regulation of several sigma factors and their corresponding anti-sigma factors. Upon dephosphorylation they bind the anti-sigma factor and induce the release of the sigma factor from the anti-sigma factor. In a feedback mechanism the anti-anti-sigma factor can be inactivated via phosphorylation by the anti-sigma factor. Well studied examples from Bacillus subtilis are SpoIIAA (regulating sigmaF and sigmaC which play an important role in sporulation) and RsbV (regulating sigmaB involved in the general stress response). The STAS domain is also found in the C- terminal region of sulphate transporters and stressosomes.
Probab=39.05 E-value=1.2e+02 Score=20.51 Aligned_cols=80 Identities=11% Similarity=0.086 Sum_probs=48.8
Q ss_pred CcEEEEccccCcchHHHHHHHHHhhccCCCCCceEEEEeCCC-CChhHHHHHHHHHHhcC-CCeEEEEccccchHHHHHH
Q 028125 31 ERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPG-GDVTPTLAIYDTMQSLK-SPVGTHCVGFAYHLAGFLL 108 (213)
Q Consensus 31 ~~iI~i~G~I~~~~~~~l~~~l~~l~~~~~~~~I~l~INSpG-G~v~~~~~I~~~i~~~~-~~v~t~~~G~aaSaa~~I~ 108 (213)
..++.+.|+++-..+..+.+.+....... .+.|.|.+..-. =+......|.+..+.+. ..+...+.|......-++-
T Consensus 9 ~~ii~l~G~l~~~~~~~~~~~~~~~~~~~-~~~viid~~~v~~iDs~g~~~L~~l~~~~~~~g~~v~i~~~~~~~~~~l~ 87 (99)
T cd07043 9 VLVVRLSGELDAATAPELREALEELLAEG-PRRLVLDLSGVTFIDSSGLGVLLGAYKRARAAGGRLVLVNVSPAVRRVLE 87 (99)
T ss_pred EEEEEEeceecccchHHHHHHHHHHHHcC-CCEEEEECCCCCEEcchhHHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHH
Confidence 45788999999998888888876554332 456666653322 34455556666666654 2455555555555555554
Q ss_pred hcC
Q 028125 109 AGG 111 (213)
Q Consensus 109 ~ag 111 (213)
.++
T Consensus 88 ~~g 90 (99)
T cd07043 88 LTG 90 (99)
T ss_pred HhC
Confidence 444
No 192
>PRK13170 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=38.88 E-value=27 Score=28.34 Aligned_cols=29 Identities=28% Similarity=0.676 Sum_probs=21.4
Q ss_pred CC-CChhHHH------HHHHHHHhcCCCeEEEEccc
Q 028125 71 PG-GDVTPTL------AIYDTMQSLKSPVGTHCVGF 99 (213)
Q Consensus 71 pG-G~v~~~~------~I~~~i~~~~~~v~t~~~G~ 99 (213)
|| |...+++ .+.+.++..+.||..+|.|.
T Consensus 45 PG~G~~~~~~~~l~~~~l~~~i~~~~~PilGIClG~ 80 (196)
T PRK13170 45 PGVGTAQAAMDQLRERELIDLIKACTQPVLGICLGM 80 (196)
T ss_pred CCCCchHHHHHHHHHcChHHHHHHcCCCEEEECHHH
Confidence 88 7766663 35678888888988888764
No 193
>PF01740 STAS: STAS domain; InterPro: IPR002645 The STAS (Sulphate Transporter and AntiSigma factor antagonist) domain is found in the C-terminal region of sulphate transporters and bacterial anti-sigma factor antagonists. It has been suggested that this domain may have a general NTP binding function. The establishment of differential gene expression in sporulating Bacillus subtilis involves four protein components one of which is SpoIIAA (P10727 from SWISSPROT). The four components regulate the sporulation sigma factor F. Early in sporulation, SpoIIAA is in the phosphorylated state (SpoIIAA-P), as a result of the activity of the ATP-dependent protein kinase SpoIIAB (P10728 from SWISSPROT). The site at which this protein is a conserved serine. SpoIIAB is an anti-sigma factor that in its free form inhibits F by binding to it. Competition by SpoIIAA (the anti-anti-sigma factor) for binding to SpoIIAB releases Sigma F activity []. The STAS domain is found in the anti-sigma factor antagonist SpoIIAA.; PDB: 3T6O_B 3LKL_B 1H4Z_A 1H4Y_B 1H4X_B 3NY7_A 3OIZ_A 1T6R_A 1VC1_B 1SBO_A ....
Probab=38.42 E-value=1.5e+02 Score=21.22 Aligned_cols=78 Identities=18% Similarity=0.138 Sum_probs=48.5
Q ss_pred cEEEEccccCcchHHHHHHHHHhhccCCC--------CCceEEEEeCCCC-ChhHHHHHHHHHHhcC-CCeEEEEccccc
Q 028125 32 RVIFIGQNIDEEFSNQILATMLYLDSVDD--------SKRVYMYINGPGG-DVTPTLAIYDTMQSLK-SPVGTHCVGFAY 101 (213)
Q Consensus 32 ~iI~i~G~I~~~~~~~l~~~l~~l~~~~~--------~~~I~l~INSpGG-~v~~~~~I~~~i~~~~-~~v~t~~~G~aa 101 (213)
.++.+.|+++-.+++.+.+.+..+....+ .+.|+|.+..--. +..+...|.+..+.+. ..+..+..+...
T Consensus 11 ~ii~~~g~l~f~~~~~~~~~i~~~~~~~~~~~~~~~~~~~vIlD~s~v~~iDssgi~~L~~~~~~~~~~g~~~~l~~~~~ 90 (117)
T PF01740_consen 11 LIIRLDGPLFFANAEEFRDRIRKLIDEDPERIKKRQTIKNVILDMSGVSFIDSSGIQALVDIIKELRRRGVQLVLVGLNP 90 (117)
T ss_dssp EEEEEESEESHHHHHHHHHHHHHHHCCSSS--HTSSSSSEEEEEETTESEESHHHHHHHHHHHHHHHHTTCEEEEESHHH
T ss_pred EEEEEeeEEEHHHHHHHHHHHHHhhhcccccccccccceEEEEEEEeCCcCCHHHHHHHHHHHHHHHHCCCEEEEEECCH
Confidence 67889999999999999999987665543 4677776644322 3444455555555554 344555545444
Q ss_pred hHHHHHHh
Q 028125 102 HLAGFLLA 109 (213)
Q Consensus 102 Saa~~I~~ 109 (213)
...-.+-.
T Consensus 91 ~v~~~l~~ 98 (117)
T PF01740_consen 91 DVRRILER 98 (117)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44444333
No 194
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=38.41 E-value=54 Score=28.35 Aligned_cols=35 Identities=23% Similarity=0.368 Sum_probs=29.9
Q ss_pred eEEEEeCCC-CChhHHHHHHHHHHhcCCCeEEEEccc
Q 028125 64 VYMYINGPG-GDVTPTLAIYDTMQSLKSPVGTHCVGF 99 (213)
Q Consensus 64 I~l~INSpG-G~v~~~~~I~~~i~~~~~~v~t~~~G~ 99 (213)
|.+.+..+| |.++.+..|.++|+. +..|..++.|.
T Consensus 2 il~~~~g~G~GH~~r~~ala~~L~~-g~ev~~~~~~~ 37 (321)
T TIGR00661 2 ILYSVCGEGFGHTTRSVAIGEALKN-DYEVSYIASGR 37 (321)
T ss_pred EEEEEeccCccHHHHHHHHHHHHhC-CCeEEEEEcCC
Confidence 788899999 999999999999998 77776666555
No 195
>PF01220 DHquinase_II: Dehydroquinase class II; InterPro: IPR001874 3-dehydroquinate dehydratase (4.2.1.10 from EC), or dehydroquinase, catalyzes the conversion of 3-dehydroquinate into 3-dehydroshikimate. It is the third step in the shikimate pathway for the biosynthesis of aromatic amino acids from chorismate. Two classes of dehydroquinases exist, known as types I and II. Class-II enzymes are homododecameric enzymes of about 17 kDa. They are found in some bacteria such as actinomycetales [, ] and some fungi where they act in a catabolic pathway that allows the use of quinic acid as a carbon source.; GO: 0003855 3-dehydroquinate dehydratase activity; PDB: 3N8K_J 3N7A_I 3N87_F 3N8N_H 3N86_N 1H0S_A 3N59_J 1H05_A 1H0R_A 2Y71_A ....
Probab=38.23 E-value=74 Score=24.82 Aligned_cols=48 Identities=21% Similarity=0.398 Sum_probs=31.7
Q ss_pred HHHHHHHHhhccCCCCCceEEEEeCCCCChhHHHHHHHHHHhcCCCeEEEEcc
Q 028125 46 NQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVG 98 (213)
Q Consensus 46 ~~l~~~l~~l~~~~~~~~I~l~INSpGG~v~~~~~I~~~i~~~~~~v~t~~~G 98 (213)
..+++.|.... ++.++|.| | |||.-..+.+|.|+|+....|++=+=..
T Consensus 54 Gelid~I~~a~--~~~dgiII--N-pga~thtS~Ai~DAl~~~~~P~vEVHiS 101 (140)
T PF01220_consen 54 GELIDWIHEAR--DDVDGIII--N-PGAYTHTSIAIRDALKAISIPVVEVHIS 101 (140)
T ss_dssp HHHHHHHHHHT--CTTSEEEE--E--GGGGHT-HHHHHHHHCCTS-EEEEESS
T ss_pred HHHHHHHHHHH--hhCCEEEE--c-cchhccccHHHHHHHHcCCCCEEEEEcC
Confidence 45667676432 23555554 3 9999999999999999999997665443
No 196
>cd07041 STAS_RsbR_RsbS_like Sulphate Transporter and Anti-Sigma factor antagonist domain of the "stressosome" complex proteins RsbS and RsbR, regulators of the bacterial stress activated alternative sigma factor sigma-B by phosphorylation. The STAS (Sulphate Transporter and Anti-Sigma factor antagonist) domain of proteins related to RsbS and RsbR which are part of the "stressosome" complex that plays an important role in the regulation of the bacterial stress activated alternative sigma factor sigma-B. During stress conditions RsbS and RsbR are phosphorylated which leads to the release of RsbT, an activator of of the RsbU phosphatase, which in turn activates RsbV which leads to the release and activation of sigma factor B. RsbS is a single domain protein (STAS domain), while RsbR-like proteins have a well-conserved C-terminal STATS domain and a variable N-terminal domain. The STAS domain is also found in the C- terminal region of sulphate transporters and anti-anti-sigma factors.
Probab=37.72 E-value=1.5e+02 Score=21.00 Aligned_cols=80 Identities=19% Similarity=0.157 Sum_probs=44.3
Q ss_pred cEEEEccccCcchHHHHHHHHHhhccCCCCCceEEEEe-CCCCChhHHHHHHHHHHhcC-CCeEEEEccccchHHHHHHh
Q 028125 32 RVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYIN-GPGGDVTPTLAIYDTMQSLK-SPVGTHCVGFAYHLAGFLLA 109 (213)
Q Consensus 32 ~iI~i~G~I~~~~~~~l~~~l~~l~~~~~~~~I~l~IN-SpGG~v~~~~~I~~~i~~~~-~~v~t~~~G~aaSaa~~I~~ 109 (213)
.++.+.|+++...+..+.+.+...-.+...+.|.|.+. .+-=+.+....+.+..+.++ .-+..++.|.-....-.+-.
T Consensus 12 ~v~~l~G~L~~~~a~~~~~~l~~~~~~~~~~~vvlDls~v~~iDssg~~~l~~~~~~~~~~g~~l~l~g~~~~v~~~l~~ 91 (109)
T cd07041 12 LVLPLIGDLDDERAEQLQERLLEAISRRRARGVIIDLTGVPVIDSAVARHLLRLARALRLLGARTILTGIRPEVAQTLVE 91 (109)
T ss_pred EEEeeeeeECHHHHHHHHHHHHHHHHHcCCCEEEEECCCCchhcHHHHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHH
Confidence 56789999999999998887754332234556666542 12122333444444444443 23444444555554544444
Q ss_pred cC
Q 028125 110 GG 111 (213)
Q Consensus 110 ag 111 (213)
+|
T Consensus 92 ~g 93 (109)
T cd07041 92 LG 93 (109)
T ss_pred hC
Confidence 44
No 197
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=37.59 E-value=94 Score=28.69 Aligned_cols=64 Identities=19% Similarity=0.293 Sum_probs=45.5
Q ss_pred cEEEEccccCcchHHHHHHHHHhhccCCCCCceEEEEeCCCCChhHHHHHHHHHHhc--CCCeEEEEccccchH
Q 028125 32 RVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSL--KSPVGTHCVGFAYHL 103 (213)
Q Consensus 32 ~iI~i~G~I~~~~~~~l~~~l~~l~~~~~~~~I~l~INSpGG~v~~~~~I~~~i~~~--~~~v~t~~~G~aaSa 103 (213)
.+|.+..+.+-. +.+-|.++..++..+.|.+|+.+ +.++..+.++.+.. ++||+++..|....+
T Consensus 179 ~~vs~Gn~~d~~----~~d~l~~l~~D~~t~~I~ly~E~----~~~~~~f~~aa~~a~~~KPVv~~k~Grs~~g 244 (447)
T TIGR02717 179 YFVSLGNKADID----ESDLLEYLADDPDTKVILLYLEG----IKDGRKFLKTAREISKKKPIVVLKSGTSEAG 244 (447)
T ss_pred eEEECCchhhCC----HHHHHHHHhhCCCCCEEEEEecC----CCCHHHHHHHHHHHcCCCCEEEEecCCChhh
Confidence 456666665433 34556666677789999999996 44566777777765 599999998886543
No 198
>TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit. ATP citrate lyases appear to form an outgroup.
Probab=36.04 E-value=1.2e+02 Score=26.47 Aligned_cols=63 Identities=13% Similarity=0.149 Sum_probs=41.3
Q ss_pred cEEEEccccC--cchHHHHHHHHHhhccCCCCCceEEEEeCCCCChhHHHHHHHHHHh-cCCCeEEEEccccc
Q 028125 32 RVIFIGQNID--EEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQS-LKSPVGTHCVGFAY 101 (213)
Q Consensus 32 ~iI~i~G~I~--~~~~~~l~~~l~~l~~~~~~~~I~l~INSpGG~v~~~~~I~~~i~~-~~~~v~t~~~G~aa 101 (213)
.++.+..+.+ -. +.+-|.++..++..+.|.+|+.+-|-.-..+ ...++. .++||+++-.|...
T Consensus 172 ~~Vs~Gn~a~~dv~----~~D~l~~l~~Dp~T~~I~lylE~~~~~~~~~---~~~~~~~~~KPVV~lk~Grs~ 237 (286)
T TIGR01019 172 TCVGIGGDPVNGTS----FIDVLEAFEKDPETEAIVMIGEIGGSAEEEA---ADFIKQNMSKPVVGFIAGATA 237 (286)
T ss_pred EEEEeCCCcCCCCC----HHHHHHHHhhCCCCcEEEEEEecCCchHHHH---HHHHHhcCCCCEEEEEecCCC
Confidence 5567777733 33 3444556667788999999999654333322 233444 67999999988865
No 199
>TIGR02364 dha_pts dihydroxyacetone kinase, phosphotransfer subunit. In E. coli and many other bacteria, unlike the yeasts and a few bacteria such as Citrobacter freundii, the dihydroxyacetone kinase (also called glycerone kinase) transfers a phosphate from a phosphoprotein rather than from ATP and contains multiple subunits. This protein, which resembles proteins of PTS transport systems, is found with its gene adjacent to
Probab=35.95 E-value=1.9e+02 Score=21.82 Aligned_cols=69 Identities=13% Similarity=0.190 Sum_probs=43.9
Q ss_pred hhHHhhc--cCcEEEEccccCcc---hHHHHHHHHHhhccCCCCCceEEEEeCCCCChhHHHHHHHHHHhcCCCeEE
Q 028125 23 DLWNALY--RERVIFIGQNIDEE---FSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGT 94 (213)
Q Consensus 23 ~~~~~~~--~~~iI~i~G~I~~~---~~~~l~~~l~~l~~~~~~~~I~l~INSpGG~v~~~~~I~~~i~~~~~~v~t 94 (213)
+..+++. ..++..+.|.-+.. ..+++.+.+..+. +..+.+.+..+= ||++......++.++.-...+++
T Consensus 18 ~~~~~~~g~~~~i~~~gg~~d~~~gt~~~~I~~ai~~~~--~~~dgVlvl~DL-Ggs~~n~e~a~~~l~~~~~~~v~ 91 (125)
T TIGR02364 18 ELIKQMAGDDVTIISAGGTDDGRLGTSPDKIIEAIEKAD--NEADGVLIFYDL-GSAVMNAEMAVELLEDEDRDKVH 91 (125)
T ss_pred HHHHHHcCCCccEEEEecCCCCCccchHHHHHHHHHHhc--CCCCCEEEEEcC-CCcHhHHHHHHHHhccccccEEE
Confidence 3444453 46777777665443 3456666665442 225689999999 99998887777777654444444
No 200
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=35.91 E-value=1.9e+02 Score=26.48 Aligned_cols=85 Identities=15% Similarity=0.122 Sum_probs=53.4
Q ss_pred cEEEEccccC-cchHHHHHHHHHhhccCCCCCceEEEEeCCCCCh-----hHHHHHHHHHHhcCCCeEEEEccccchHHH
Q 028125 32 RVIFIGQNID-EEFSNQILATMLYLDSVDDSKRVYMYINGPGGDV-----TPTLAIYDTMQSLKSPVGTHCVGFAYHLAG 105 (213)
Q Consensus 32 ~iI~i~G~I~-~~~~~~l~~~l~~l~~~~~~~~I~l~INSpGG~v-----~~~~~I~~~i~~~~~~v~t~~~G~aaSaa~ 105 (213)
++..+.-.+. +.....++++|..++..+ . .+. .|-=-||++ +.-..+.++|-.++.||++=+...-- =+
T Consensus 164 ~~~~~~~~vQG~~A~~~i~~al~~~~~~~-~-Dvi-ii~RGGGS~eDL~~Fn~e~v~~ai~~~~~Pvis~IGHE~D--~t 238 (438)
T PRK00286 164 EVIIYPTLVQGEGAAASIVAAIERANARG-E-DVL-IVARGGGSLEDLWAFNDEAVARAIAASRIPVISAVGHETD--FT 238 (438)
T ss_pred eEEEecCcCcCccHHHHHHHHHHHhcCCC-C-CEE-EEecCCCCHHHhhccCcHHHHHHHHcCCCCEEEeccCCCC--cc
Confidence 4444444453 446688999998775532 2 233 333445664 45678999999999999986654432 23
Q ss_pred HHHhcCCCCcEeeccCCe
Q 028125 106 FLLAGGEKGNRSAMPLSR 123 (213)
Q Consensus 106 ~I~~ag~~~~r~~~p~s~ 123 (213)
+.=..+|. |...|.+.
T Consensus 239 l~D~vAd~--ra~TPtaa 254 (438)
T PRK00286 239 IADFVADL--RAPTPTAA 254 (438)
T ss_pred HHHHhhhc--cCCChHHH
Confidence 44455666 77777653
No 201
>cd01026 TOPRIM_OLD TOPRIM_OLD: topoisomerase-primase (TOPRIM) nucleotidyl transferase/hydrolase domain of the type found in bacterial and archaeal nucleases of the OLD (overcome lysogenization defect) family. The bacteriophage P2 OLD protein, which has DNase as well as RNase activity, consists of an N-terminal ABC-type ATPase domain and a C-terminal Toprim domain; the nuclease activity of OLD is stimulated by ATP, though the ATPase activity is not DNA-dependent. Functional details on OLD are scant and further experimentation is required to define the relationship between the ATPase and Toprim nuclease domains. The TOPRIM domain has two conserved motifs, one of which centers at a conserved glutamate and the other one at two conserved aspartates (DxD). The conserved glutamate may act as a general acid in strand cleavage by nucleases. The DXD motif may co-ordinate Mg2+, a cofactor required for full catalytic function.
Probab=35.80 E-value=1.1e+02 Score=21.59 Aligned_cols=69 Identities=16% Similarity=0.190 Sum_probs=40.9
Q ss_pred hccCcEEEEccccCcchHHHHHHHHHhhccCCCCCceEEEEeCCCCChhHHHHHHHHHHhcCCCeEEEEccccchH
Q 028125 28 LYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHL 103 (213)
Q Consensus 28 ~~~~~iI~i~G~I~~~~~~~l~~~l~~l~~~~~~~~I~l~INSpGG~v~~~~~I~~~i~~~~~~v~t~~~G~aaSa 103 (213)
+|.+++|.+.|+=+......+.+.+ ... -..-.+.|=.-||. ........+...+.|+.++...-....
T Consensus 1 fFa~~vIlVEG~tE~~~l~~~~~~~----~~~-~~~~~i~ii~~gG~--~~~~~~~ll~~~~i~~~vi~D~D~~~~ 69 (97)
T cd01026 1 FFADKVILVEGDSEEILLPALAKKL----GLD-LDEAGISIIPVGGK--NFKPFIKLLNALGIPVAVLTDLDAKRN 69 (97)
T ss_pred CCCCeEEEEecHHHHHHHHHHHHHh----CCC-HHHCCEEEEEeCCc--chHHHHHHHHHcCCCEEEEEeCCCCCC
Confidence 4778999999974443333333333 111 12223344344665 455557888888899999887665443
No 202
>KOG3569 consensus RAS signaling inhibitor ST5 [Signal transduction mechanisms]
Probab=35.05 E-value=40 Score=30.64 Aligned_cols=67 Identities=21% Similarity=0.300 Sum_probs=48.0
Q ss_pred CCCCCCeeeeecCCCCCCchhhhHHhhccCcEEEEccccC-cchHHHHHHHHHhhccCCCCCceEEEEeCCCC
Q 028125 2 MPIGTPKVLYRTPGEGSWQWVDLWNALYRERVIFIGQNID-EEFSNQILATMLYLDSVDDSKRVYMYINGPGG 73 (213)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iI~i~G~I~-~~~~~~l~~~l~~l~~~~~~~~I~l~INSpGG 73 (213)
.|-|+|++--..++ -.|..++++++++---++. |. ....+.++..|....--+..+.|.+-..|||-
T Consensus 91 L~~G~~~c~CilS~---l~wF~vF~KlLn~v~~~~~--~~q~~~v~~~l~~l~~~p~P~pg~tv~l~~~~~~~ 158 (425)
T KOG3569|consen 91 LPSGLPECYCILSR---LGWFGVFSKLLNEVEDRRG--ISQEADVEPFLRSLYEAPFPAPGKTVKLKVFSPGS 158 (425)
T ss_pred cCCCCCeEEEEeeC---CChHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhcCCCCCCCCeEEEEecCCCC
Confidence 47788888888887 7899999999986222221 33 34466777777755444567899999999984
No 203
>TIGR00282 metallophosphoesterase, MG_246/BB_0505 family. A member of this family from Mycoplasma Pneumoniae has been crystallized and described as a novel phosphatase.
Probab=34.52 E-value=99 Score=26.65 Aligned_cols=65 Identities=17% Similarity=0.104 Sum_probs=42.7
Q ss_pred cEEEEccccCcchHHHHHHHHHhhccCCCCCceEEEEeCCCCChhHHHHHHHHHHhcCCCeEEEE
Q 028125 32 RVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHC 96 (213)
Q Consensus 32 ~iI~i~G~I~~~~~~~l~~~l~~l~~~~~~~~I~l~INSpGG~v~~~~~I~~~i~~~~~~v~t~~ 96 (213)
+++|+...+...--..+.+.|..+.++.+.+-+...-....|..--...+++.|..++..+.|..
T Consensus 2 ~ilfiGDi~G~~Gr~~l~~~L~~lk~~~~~D~vIaNgEn~~gG~Gi~~~~~~~L~~~GvDviT~G 66 (266)
T TIGR00282 2 KFLFIGDVYGKAGRKIVKNNLPQLKSKYQADLVIANGENTTHGKGLTLKIYEFLKQSGVNYITMG 66 (266)
T ss_pred eEEEEEecCCHHHHHHHHHHHHHHHHhCCCCEEEEcCcccCCCCCCCHHHHHHHHhcCCCEEEcc
Confidence 57777776666444555555556665555555555554444434556889999999999988875
No 204
>PF06972 DUF1296: Protein of unknown function (DUF1296); InterPro: IPR009719 This family represents a conserved region approximately 60 residues long within a number of plant proteins of unknown function.
Probab=33.97 E-value=76 Score=21.07 Aligned_cols=34 Identities=18% Similarity=0.138 Sum_probs=22.9
Q ss_pred HHHHHHHHHhCC-CHHHHHHHhcCCceeCHHHHHHc
Q 028125 153 YIFKELSRKTGQ-PFEKITKDLSRIKRFGSQEALEY 187 (213)
Q Consensus 153 ~~~~~~a~~tg~-~~~~i~~~~~~~~~~sa~EA~~~ 187 (213)
.+++.+.+-+|. +.++|..++. +..|++.||++-
T Consensus 7 k~VQ~iKEiv~~hse~eIya~L~-ecnMDpnea~qr 41 (60)
T PF06972_consen 7 KTVQSIKEIVGCHSEEEIYAMLK-ECNMDPNEAVQR 41 (60)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHH-HhCCCHHHHHHH
Confidence 345555666666 7777777665 577888888764
No 205
>COG0779 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=33.62 E-value=99 Score=24.45 Aligned_cols=37 Identities=16% Similarity=0.246 Sum_probs=23.4
Q ss_pred cccCcchHHHHHHHHHh-hccCCCC-CceEEEEeCCCCC
Q 028125 38 QNIDEEFSNQILATMLY-LDSVDDS-KRVYMYINGPGGD 74 (213)
Q Consensus 38 G~I~~~~~~~l~~~l~~-l~~~~~~-~~I~l~INSpGG~ 74 (213)
|.++-+.+..+..++.. |+.+++. ..-+|.+.|||-+
T Consensus 47 g~v~lddC~~vSr~is~~LD~edpi~~~Y~LEVSSPGld 85 (153)
T COG0779 47 GGVTLDDCADVSRAISALLDVEDPIEGAYFLEVSSPGLD 85 (153)
T ss_pred CCCCHHHHHHHHHHHHHHhccCCcccccEEEEeeCCCCC
Confidence 56665556555555542 3444443 4677999999976
No 206
>PLN02522 ATP citrate (pro-S)-lyase
Probab=31.16 E-value=1.4e+02 Score=28.97 Aligned_cols=67 Identities=13% Similarity=0.164 Sum_probs=45.6
Q ss_pred cCcEEEEccccCcchHHHHHHHHHhhccCCCCCceEEEEeCCCCChhHHHHHHHHHHh--cCCCeEEEEccccc
Q 028125 30 RERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQS--LKSPVGTHCVGFAY 101 (213)
Q Consensus 30 ~~~iI~i~G~I~~~~~~~l~~~l~~l~~~~~~~~I~l~INSpGG~v~~~~~I~~~i~~--~~~~v~t~~~G~aa 101 (213)
...+|.+.+..+..+ .+.+-|.++.+++.++.|.+++-=-|. +.....+++++ .++||+++..|.++
T Consensus 194 ~S~~VsiGnd~~~g~--~~~D~L~~~~~Dp~Tk~IvlygEiGg~---~e~~f~ea~~~a~~~KPVVa~kaGrsa 262 (608)
T PLN02522 194 IYEGIAIGGDVFPGS--TLSDHVLRFNNIPQIKMIVVLGELGGR---DEYSLVEALKQGKVSKPVVAWVSGTCA 262 (608)
T ss_pred eEEEEEeCCCCCCCC--CHHHHHHHHhcCCCCCEEEEEEecCch---hHHHHHHHHHHhcCCCCEEEEeccCCC
Confidence 346677888655322 245566677777888999998873332 44555666665 46899999999877
No 207
>PRK14635 hypothetical protein; Provisional
Probab=31.05 E-value=97 Score=24.54 Aligned_cols=36 Identities=8% Similarity=0.170 Sum_probs=22.1
Q ss_pred ccCcchHHHHHHHHHh-hccCCCCCceEEEEeCCCCC
Q 028125 39 NIDEEFSNQILATMLY-LDSVDDSKRVYMYINGPGGD 74 (213)
Q Consensus 39 ~I~~~~~~~l~~~l~~-l~~~~~~~~I~l~INSpGG~ 74 (213)
.|+-+.+..+...+.. |+..+....-.|.+.|||=+
T Consensus 49 gv~lddC~~vSr~is~~LD~~d~~~~Y~LEVSSPGld 85 (162)
T PRK14635 49 SVSLLECEQVSRKLKEELERISPDLDFTLKVSSAGAE 85 (162)
T ss_pred CcCHHHHHHHHHHHHHHhCCCCCCCCeEEEEcCCCCC
Confidence 3665555555555432 33334446889999999944
No 208
>PF14538 Raptor_N: Raptor N-terminal CASPase like domain
Probab=30.71 E-value=1.3e+02 Score=23.59 Aligned_cols=65 Identities=23% Similarity=0.222 Sum_probs=42.7
Q ss_pred cCcchHHHHHHHHHhhccCCCCCceEEEEeCCCCC-------h---------hHHHHHHHHHHhcCCCeEEEEccccchH
Q 028125 40 IDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGD-------V---------TPTLAIYDTMQSLKSPVGTHCVGFAYHL 103 (213)
Q Consensus 40 I~~~~~~~l~~~l~~l~~~~~~~~I~l~INSpGG~-------v---------~~~~~I~~~i~~~~~~v~t~~~G~aaSa 103 (213)
+|+. .+.+...+..++.+.+.+.|.++-|.-|-- + +.=+.|++.....+.|.+.+.+ |.+|
T Consensus 70 ~dpt-~e~~~~~~~~~R~~a~~~RvLFHYnGhGvP~Pt~~GeIw~f~~~~tqyip~si~dL~~~lg~Psi~V~D--C~~A 146 (154)
T PF14538_consen 70 LDPT-VEDLKRLCQSLRRNAKDERVLFHYNGHGVPRPTENGEIWVFNKNYTQYIPLSIYDLQSWLGSPSIYVFD--CSNA 146 (154)
T ss_pred cCCC-HHHHHHHHHHHHhhCCCceEEEEECCCCCCCCCCCCeEEEEcCCCCcceEEEHHHHHHhcCCCEEEEEE--CCcH
Confidence 4443 344555455555555567899998888732 2 3346899999999999888775 5556
Q ss_pred HHHH
Q 028125 104 AGFL 107 (213)
Q Consensus 104 a~~I 107 (213)
|.+|
T Consensus 147 G~il 150 (154)
T PF14538_consen 147 GSIL 150 (154)
T ss_pred HHHH
Confidence 6554
No 209
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=30.70 E-value=3.4e+02 Score=24.95 Aligned_cols=85 Identities=11% Similarity=0.109 Sum_probs=52.2
Q ss_pred cEEEEccccC-cchHHHHHHHHHhhccCCCCCceEEEEeCCCCCh-----hHHHHHHHHHHhcCCCeEEEEccccchHHH
Q 028125 32 RVIFIGQNID-EEFSNQILATMLYLDSVDDSKRVYMYINGPGGDV-----TPTLAIYDTMQSLKSPVGTHCVGFAYHLAG 105 (213)
Q Consensus 32 ~iI~i~G~I~-~~~~~~l~~~l~~l~~~~~~~~I~l~INSpGG~v-----~~~~~I~~~i~~~~~~v~t~~~G~aaSaa~ 105 (213)
.++.+.-.+. +.....+++.|..++..+..+ +|.|-=-||+. +.-..+..+|..++.||++=+....- =+
T Consensus 158 ~~~~~~~~vQG~~a~~~i~~al~~~~~~~~~d--viii~RGGGs~eDL~~Fn~e~~~rai~~~~~Pvis~iGHe~D--~t 233 (432)
T TIGR00237 158 KVVIYPTLVQGEGAVQSIVESIELANTKNECD--VLIVGRGGGSLEDLWSFNDEKVARAIFLSKIPIISAVGHETD--FT 233 (432)
T ss_pred eEEEecccccCccHHHHHHHHHHHhhcCCCCC--EEEEecCCCCHHHhhhcCcHHHHHHHHcCCCCEEEecCcCCC--cc
Confidence 4554444554 445678999998876533222 23334445654 56778999999999999986653332 13
Q ss_pred HHHhcCCCCcEeeccCC
Q 028125 106 FLLAGGEKGNRSAMPLS 122 (213)
Q Consensus 106 ~I~~ag~~~~r~~~p~s 122 (213)
+.=..+|. |...|.+
T Consensus 234 i~D~vAd~--ra~TPta 248 (432)
T TIGR00237 234 ISDFVADL--RAPTPSA 248 (432)
T ss_pred HHHHhhhc--cCCCcHH
Confidence 33345565 7777754
No 210
>PHA02097 hypothetical protein
Probab=30.49 E-value=45 Score=21.48 Aligned_cols=16 Identities=44% Similarity=0.636 Sum_probs=13.4
Q ss_pred CCCceEEEEeCCCCCh
Q 028125 60 DSKRVYMYINGPGGDV 75 (213)
Q Consensus 60 ~~~~I~l~INSpGG~v 75 (213)
+...+..-+|+|||-+
T Consensus 8 d~~~vt~amntp~gv~ 23 (59)
T PHA02097 8 DSQVVTSAMNTPGGVI 23 (59)
T ss_pred CCceEEEEeeCCCcEE
Confidence 4678999999999964
No 211
>cd06844 STAS Sulphate Transporter and Anti-Sigma factor antagonist domain found in the C-terminal region of sulphate transporters as well as in bacterial and archaeal proteins involved in the regulation of sigma factors. The STAS (Sulphate Transporter and Anti-Sigma factor antagonist) domain is found in the C-terminal region of sulphate transporters as well as in bacterial and archaeal proteins involved in the regulation of sigma factors, like anti-anti-sigma factors and "stressosome" components. The sigma factor regulators are involved in protein-protein interaction which is regulated by phosphorylation.
Probab=30.29 E-value=83 Score=22.09 Aligned_cols=38 Identities=16% Similarity=0.097 Sum_probs=26.5
Q ss_pred CcEEEEccccCcchHHHHHHHHHhhccCCCCCceEEEE
Q 028125 31 ERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYI 68 (213)
Q Consensus 31 ~~iI~i~G~I~~~~~~~l~~~l~~l~~~~~~~~I~l~I 68 (213)
-.++.+.|+++-.++..+.+++..+..+...+.+.|.+
T Consensus 9 v~ii~~~G~l~f~~~~~~~~~l~~~~~~~~~~~vilDl 46 (100)
T cd06844 9 YWVVRLEGELDHHSVEQFKEELLHNITNVAGKTIVIDI 46 (100)
T ss_pred EEEEEEEEEecHhhHHHHHHHHHHHHHhCCCCEEEEEC
Confidence 35788999999999999988876433333345565544
No 212
>PRK02866 cyanate hydratase; Validated
Probab=30.07 E-value=1e+02 Score=24.27 Aligned_cols=32 Identities=16% Similarity=0.112 Sum_probs=27.3
Q ss_pred HHHHHHhCCCHHHHHHHhcCCceeCHHHHHHc
Q 028125 156 KELSRKTGQPFEKITKDLSRIKRFGSQEALEY 187 (213)
Q Consensus 156 ~~~a~~tg~~~~~i~~~~~~~~~~sa~EA~~~ 187 (213)
+-+|+..|++...+.....+...+++++|..+
T Consensus 22 ~~IA~~iG~S~v~vaaa~lGQ~~ls~e~A~kl 53 (147)
T PRK02866 22 ADIAEAIGLSEVWVTAALLGQMTLPAEEAEKV 53 (147)
T ss_pred HHHHHHhCCCHHHHHHHHhCCCCCCHHHHHHH
Confidence 56788889999999888887888999999886
No 213
>PF03610 EIIA-man: PTS system fructose IIA component; InterPro: IPR004701 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. The Man family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of Escherichia coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for IIA and IIB components.; GO: 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016021 integral to membrane; PDB: 3GDW_B 2JZN_A 1VSQ_A 2JZO_B 1VRC_A 1PDO_A 3GX1_A 3B48_B 3BED_B 3IPR_C ....
Probab=29.37 E-value=2e+02 Score=20.82 Aligned_cols=89 Identities=12% Similarity=0.129 Sum_probs=46.2
Q ss_pred eecCCCCCCchhhhHHhhccC---cEEEEccccCcchHHHHHHHHHh-hccCCCCCceEEEEeCCCCChhHHHHHHHHHH
Q 028125 11 YRTPGEGSWQWVDLWNALYRE---RVIFIGQNIDEEFSNQILATMLY-LDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQ 86 (213)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~---~iI~i~G~I~~~~~~~l~~~l~~-l~~~~~~~~I~l~INSpGG~v~~~~~I~~~i~ 86 (213)
.-+||.-..--.+..+.++.+ .+..+...-+... +.+.+++.. +++.+..+.|.+..+-.||++..... ..+.
T Consensus 4 i~sHG~~A~g~~~~~~~i~G~~~~~i~~~~~~~~~~~-~~~~~~l~~~i~~~~~~~~vlil~Dl~ggsp~n~a~--~~~~ 80 (116)
T PF03610_consen 4 IASHGSLAEGLLESAEMILGEDQDNIEAVDLYPDESI-EDFEEKLEEAIEELDEGDGVLILTDLGGGSPFNEAA--RLLL 80 (116)
T ss_dssp EEEETTHHHHHHHHHHHHHTSTCSSEEEEEETTTSCH-HHHHHHHHHHHHHCCTTSEEEEEESSTTSHHHHHHH--HHHC
T ss_pred EEECcHHHHHHHHHHHHHcCCCcccEEEEECcCCCCH-HHHHHHHHHHHHhccCCCcEEEEeeCCCCccchHHH--HHhc
Confidence 345552222233444555555 6777766555432 333333332 23445578999999999998776532 2222
Q ss_pred hcCCCeEEEEccccchHH
Q 028125 87 SLKSPVGTHCVGFAYHLA 104 (213)
Q Consensus 87 ~~~~~v~t~~~G~aaSaa 104 (213)
. .+.+.++.|....+-
T Consensus 81 ~--~~~~~vi~G~Nlpml 96 (116)
T PF03610_consen 81 D--KPNIRVISGVNLPML 96 (116)
T ss_dssp T--STTEEEEES--HHHH
T ss_pred c--CCCEEEEecccHHHH
Confidence 2 233446666655544
No 214
>PF01381 HTH_3: Helix-turn-helix; InterPro: IPR001387 This is large family of DNA binding helix-turn helix proteins that include a bacterial plasmid copy control protein, bacterial methylases, various bacteriophage transcription control proteins and a vegetative specific protein from Dictyostelium discoideum (Slime mould).; GO: 0043565 sequence-specific DNA binding; PDB: 2AXU_A 2AWI_D 2AXV_D 2AXZ_C 2AW6_A 3KXA_C 3BS3_A 2CRO_A 1ZUG_A 3CRO_R ....
Probab=28.98 E-value=1e+02 Score=18.82 Aligned_cols=32 Identities=19% Similarity=0.120 Sum_probs=24.9
Q ss_pred HHHHHHhCCCHHHHHHHhcCCceeCHHHHHHc
Q 028125 156 KELSRKTGQPFEKITKDLSRIKRFGSQEALEY 187 (213)
Q Consensus 156 ~~~a~~tg~~~~~i~~~~~~~~~~sa~EA~~~ 187 (213)
.-+++.+|.++..+..+....+..+.+.+.++
T Consensus 13 ~~la~~~gis~~~i~~~~~g~~~~~~~~~~~i 44 (55)
T PF01381_consen 13 KELAEKLGISRSTISRIENGKRNPSLDTLKKI 44 (55)
T ss_dssp HHHHHHHTS-HHHHHHHHTTSSTSBHHHHHHH
T ss_pred HHHHHHhCCCcchhHHHhcCCCCCCHHHHHHH
Confidence 55788889999999998888788888877653
No 215
>PRK05678 succinyl-CoA synthetase subunit alpha; Validated
Probab=28.87 E-value=2e+02 Score=25.13 Aligned_cols=65 Identities=11% Similarity=0.139 Sum_probs=39.1
Q ss_pred cEEEEccccCcchHHHHHHHHHhhccCCCCCceEEEEeCCCCChhHHHHHHHHHHh-cCCCeEEEEccccc
Q 028125 32 RVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQS-LKSPVGTHCVGFAY 101 (213)
Q Consensus 32 ~iI~i~G~I~~~~~~~l~~~l~~l~~~~~~~~I~l~INSpGG~v~~~~~I~~~i~~-~~~~v~t~~~G~aa 101 (213)
.+|.+..+-+.. -.+.+-|.+|..++..+.|.+|+.+-|-.-..+ ...+.. .++||+++-.|...
T Consensus 174 ~~Vs~Gn~~~~d--v~~~D~l~~l~~Dp~T~~I~lylE~~~~~~~~a---~~~~~~~~~KPVV~lk~Grs~ 239 (291)
T PRK05678 174 TCVGIGGDPING--TNFIDVLEAFEEDPETEAIVMIGEIGGSAEEEA---AEYIKANVTKPVVGYIAGVTA 239 (291)
T ss_pred EEEEeCCCcCCC--CCHHHHHHHHhhCCCCcEEEEEEecCCcHHHHH---HHHHHHcCCCCEEEEEecCCC
Confidence 456676663210 123445666677888999999999433211122 222333 37999999988855
No 216
>PRK14637 hypothetical protein; Provisional
Probab=28.02 E-value=1.2e+02 Score=23.89 Aligned_cols=56 Identities=9% Similarity=0.147 Sum_probs=31.1
Q ss_pred cCcchHHHHHHHHHh-hccCCCCCceEEEEeCCCCChhHHHHHHHHHHhcCCCeEEEE
Q 028125 40 IDEEFSNQILATMLY-LDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHC 96 (213)
Q Consensus 40 I~~~~~~~l~~~l~~-l~~~~~~~~I~l~INSpGG~v~~~~~I~~~i~~~~~~v~t~~ 96 (213)
|+-+.+..+.+++.. |+........+|.+.|||=+= .-...-+..+..+.+|....
T Consensus 49 V~iddC~~vSr~Is~~LD~~~~~~~y~LEVSSPGldR-pL~~~~~f~r~~G~~V~V~l 105 (151)
T PRK14637 49 VGLDDCARVHRILVPRLEALGGVRDVFLEVSSPGIER-VIKNAAEFSIFVGETVKVWF 105 (151)
T ss_pred CCHHHHHHHHHHHHHHhcccccccCcEEEEeCCCCCC-CCCCHHHHHHhCCCEEEEEE
Confidence 666556665555432 222222345799999999651 11224455566665655543
No 217
>PF07819 PGAP1: PGAP1-like protein; InterPro: IPR012908 The sequences found in this family are similar to PGAP1 (Q765A7 from SWISSPROT). This is an endoplasmic reticulum membrane protein with a catalytic serine-containing motif that is conserved in a number of lipases. PGAP1 functions as a GPI inositol-deacylase; this deacylation is important for the efficient transport of GPI-anchored proteins from the endoplasmic reticulum to the Golgi body [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0006505 GPI anchor metabolic process, 0006886 intracellular protein transport, 0031227 intrinsic to endoplasmic reticulum membrane
Probab=27.22 E-value=1e+02 Score=25.53 Aligned_cols=22 Identities=27% Similarity=0.268 Sum_probs=12.0
Q ss_pred CCCeeeeecCCCCC--CchhhhHHhh
Q 028125 5 GTPKVLYRTPGEGS--WQWVDLWNAL 28 (213)
Q Consensus 5 ~~~~~~~~~~~~~~--~~~~~~~~~~ 28 (213)
|+|+| |.||... .+|-++.+.+
T Consensus 4 g~pVl--FIhG~~Gs~~q~rsl~~~~ 27 (225)
T PF07819_consen 4 GIPVL--FIHGNAGSYKQVRSLASEL 27 (225)
T ss_pred CCEEE--EECcCCCCHhHHHHHHHHH
Confidence 55654 5666432 5555666555
No 218
>cd01452 VWA_26S_proteasome_subunit 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins. It is an ATP-dependent protease responsible for the bulk of non-lysosomal proteolysis in eukaryotes, often using covalent modification of proteins by ubiquitylation. It consists of a 20S proteolytic core particle (CP) and a 19S regulatory particle (RP). The CP is an ATP independent peptidase consisting of hydrolyzing activities. One or both ends of CP carry the RP that confers both ubiquitin and ATP dependence to the 26S proteosome. The RP's proposed functions include recognition of substrates and translocation of these to CP for proteolysis. The RP can dissociate into a stable lid and base subcomplexes. The base is composed of three non-ATPase subunits (Rpn 1, 2 and 10). A single residue in the vWA domain of Rpn10 has been implicated to be responsible for stabilizing the lid-base association.
Probab=27.21 E-value=2.2e+02 Score=23.16 Aligned_cols=40 Identities=10% Similarity=0.180 Sum_probs=27.6
Q ss_pred CCceEEEEeCCCCChh-HHHHHHHHHHhcCCCeEEEEcccc
Q 028125 61 SKRVYMYINGPGGDVT-PTLAIYDTMQSLKSPVGTHCVGFA 100 (213)
Q Consensus 61 ~~~I~l~INSpGG~v~-~~~~I~~~i~~~~~~v~t~~~G~a 100 (213)
.+.|.+++.|||-+=. ....+...++..+..|.++..|..
T Consensus 107 ~~rivi~v~S~~~~d~~~i~~~~~~lkk~~I~v~vI~~G~~ 147 (187)
T cd01452 107 KQRIVAFVGSPIEEDEKDLVKLAKRLKKNNVSVDIINFGEI 147 (187)
T ss_pred cceEEEEEecCCcCCHHHHHHHHHHHHHcCCeEEEEEeCCC
Confidence 3589999999987532 223555666666677888887765
No 219
>TIGR03070 couple_hipB transcriptional regulator, y4mF family. Members of this family belong to a clade of helix-turn-helix DNA-binding proteins, among the larger family pfam01381 (HTH_3; Helix-turn-helix). Members are similar in sequence to the HipB protein of E. coli. Genes for members of the seed alignment for this protein family were found to be closely linked to genes encoding proteins related to HipA. The HibBA operon appears to have some features in common with toxin-antitoxin post-segregational killing systems.
Probab=27.18 E-value=1.5e+02 Score=17.90 Aligned_cols=32 Identities=13% Similarity=0.052 Sum_probs=22.6
Q ss_pred HHHHHHHhCCCHHHHHHHhcCCceeCHHHHHH
Q 028125 155 FKELSRKTGQPFEKITKDLSRIKRFGSQEALE 186 (213)
Q Consensus 155 ~~~~a~~tg~~~~~i~~~~~~~~~~sa~EA~~ 186 (213)
..-+++..|.++..+..+.+.....+.+++..
T Consensus 18 q~~lA~~~gvs~~~vs~~e~g~~~~~~~~~~~ 49 (58)
T TIGR03070 18 QADLADLAGVGLRFIRDVENGKPTVRLDKVLR 49 (58)
T ss_pred HHHHHHHhCCCHHHHHHHHCCCCCCCHHHHHH
Confidence 45678888888888888876655566665543
No 220
>COG3093 VapI Plasmid maintenance system antidote protein [General function prediction only]
Probab=26.79 E-value=96 Score=22.96 Aligned_cols=34 Identities=18% Similarity=0.200 Sum_probs=25.6
Q ss_pred HHHHHHHhCCCHHHHHHHhcCCceeCHHHHHHcC
Q 028125 155 FKELSRKTGQPFEKITKDLSRIKRFGSQEALEYG 188 (213)
Q Consensus 155 ~~~~a~~tg~~~~~i~~~~~~~~~~sa~EA~~~G 188 (213)
...+|+..|.+...+.++++..+-+|++-|++++
T Consensus 26 ~~~lA~~lgV~r~~is~ling~~~iT~dmAlrL~ 59 (104)
T COG3093 26 QTELAEALGVTRNTISELINGRRAITADMALRLA 59 (104)
T ss_pred HHHHHHHhCCCHHHHHHHHcCCcCCCHHHHHHHH
Confidence 4556777788888888888777778888887764
No 221
>PRK14642 hypothetical protein; Provisional
Probab=26.56 E-value=1.2e+02 Score=25.09 Aligned_cols=53 Identities=13% Similarity=0.146 Sum_probs=30.3
Q ss_pred cCcchHHHHHHHHHh-hccCCCCCceEEEEeCCCCChhHHHHHHHHHHhcCCCeEE
Q 028125 40 IDEEFSNQILATMLY-LDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGT 94 (213)
Q Consensus 40 I~~~~~~~l~~~l~~-l~~~~~~~~I~l~INSpGG~v~~~~~I~~~i~~~~~~v~t 94 (213)
|+-+.+..+..+|.. |+.++ .+.-+|.+.|||=+ ..-....+..+..+.+|..
T Consensus 52 VtidDC~~vSR~Is~~LDve~-~~y~~LEVSSPGld-RPLk~~~df~rfiG~~V~V 105 (197)
T PRK14642 52 VTVEDCEKVTRQLQFALEVDG-VDYKRLEVSSPGID-RPLRHEQDFERFAGEVIDI 105 (197)
T ss_pred ccHHHHHHHHHHHHHHhcccC-ccccEEEEeCCCCC-CCCCCHHHHHHhCCCeEEE
Confidence 555556666666653 33333 34347999999954 1122345666666655544
No 222
>cd06547 GH85_ENGase Endo-beta-N-acetylglucosaminidase (ENGase) hydrolyzes the N-N'-diacetylchitobiosyl core of N-glycosylproteins. The beta-1,4-glycosyl bond located between two N-acetylglucosamine residues is hydrolyzed such that N-acetylglucosamine 1 remains with the protein and N-acetylglucosamine 2 forms the reducing end of the released glycan. ENGase is a key enzyme in the processing of free oligosaccharides in the cytosol of eukaryotes. Oligosaccharides formed in the lumen of the endoplasmic reticulum are transported into the cytosol where they are catabolized by cytosolic ENGases and other enzymes, possibly to maximize the reutilization of the component sugars. ENGases have an eight-stranded alpha/beta barrel topology and are classified as a family 85 glycosyl hydrolase (GH85) domain. The GH85 ENGases are sequence-similar to the family 18 glycosyl hydrolases, also known as GH18 chitinases. An ENGase-like protein is also found in bacteria and is included in this alignment mod
Probab=25.98 E-value=2.2e+02 Score=25.34 Aligned_cols=74 Identities=14% Similarity=0.069 Sum_probs=42.9
Q ss_pred CCCeeeeecCCCCCCchhhhHHhhccCcEEEEccccCcchHHHHHHHHHhhccCCCCCceEEEEeCCCCChhHHHHHHHH
Q 028125 5 GTPKVLYRTPGEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDT 84 (213)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iI~i~G~I~~~~~~~l~~~l~~l~~~~~~~~I~l~INSpGG~v~~~~~I~~~ 84 (213)
|||+++..+-.-. ...+....++.+. ++....++++|..+...-.-+++.|.+-+.++.......+.+.
T Consensus 59 GV~Vlgti~~e~~--~~~~~~~~lL~~~---------~~~~~~~a~kLv~lak~yGfDGw~iN~E~~~~~~~~~~~l~~F 127 (339)
T cd06547 59 GVPVLGTFIFEWT--GQVEWLEDFLKKD---------EDGSFPVADKLVEVAKYYGFDGWLINIETELGDAEKAKRLIAF 127 (339)
T ss_pred CCeEEEEEEecCC--CchHHHHHHhccC---------cccchHHHHHHHHHHHHhCCCceEeeeeccCCcHHHHHHHHHH
Confidence 6677765542211 1123344454432 2333455555655555556789999999988766666666666
Q ss_pred HHhcC
Q 028125 85 MQSLK 89 (213)
Q Consensus 85 i~~~~ 89 (213)
++.+.
T Consensus 128 ~~~L~ 132 (339)
T cd06547 128 LRYLK 132 (339)
T ss_pred HHHHH
Confidence 66654
No 223
>PRK14640 hypothetical protein; Provisional
Probab=25.69 E-value=1.4e+02 Score=23.30 Aligned_cols=56 Identities=14% Similarity=0.242 Sum_probs=32.3
Q ss_pred cCcchHHHHHHHHHh-hccCCC-CCceEEEEeCCCCChhHHHHHHHHHHhcCCCeEEEE
Q 028125 40 IDEEFSNQILATMLY-LDSVDD-SKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHC 96 (213)
Q Consensus 40 I~~~~~~~l~~~l~~-l~~~~~-~~~I~l~INSpGG~v~~~~~I~~~i~~~~~~v~t~~ 96 (213)
|+-+.+..+..+|.. |+.++. ...-+|.+.|||=+ ..-...-+..+..+.+|....
T Consensus 47 v~lddC~~vSr~is~~LD~~d~i~~~Y~LEVSSPGl~-RpL~~~~~f~r~~G~~v~V~l 104 (152)
T PRK14640 47 VSVENCAEVSHQVGAIMDVEDPITEEYYLEVSSPGLD-RPLFKVAQFEKYVGQEAAVTL 104 (152)
T ss_pred CCHHHHHHHHHHHHHHhcccccCCCCeEEEEeCCCCC-CcCCCHHHHHHhCCCeEEEEE
Confidence 666666666666643 333333 35779999999965 112233455566666655543
No 224
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=25.65 E-value=1.2e+02 Score=27.96 Aligned_cols=61 Identities=20% Similarity=0.265 Sum_probs=43.1
Q ss_pred CCCCeeeeecCC------C--CCCchhhhHHhhccCcEEEEccccCcchHHHHHHHHHhhccCCCCCceEEEEeCCCCC
Q 028125 4 IGTPKVLYRTPG------E--GSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGD 74 (213)
Q Consensus 4 ~~~~~~~~~~~~------~--~~~~~~~~~~~~~~~~iI~i~G~I~~~~~~~l~~~l~~l~~~~~~~~I~l~INSpGG~ 74 (213)
-+.|++|. ++| . |+.+|.+- ..+-.++|+.|.. ..++..+..+|... .+.|.+..-||---
T Consensus 143 ~~~P~iP~-~~G~~~f~g~~~HS~~~~~~-~~~~GKrV~VIG~---GaSA~di~~~l~~~-----ga~vt~~qRs~~~~ 211 (443)
T COG2072 143 LSEPYIPD-FAGLDEFKGRILHSADWPNP-EDLRGKRVLVIGA---GASAVDIAPELAEV-----GASVTLSQRSPPHI 211 (443)
T ss_pred CCCCCCCC-CCCccCCCceEEchhcCCCc-cccCCCeEEEECC---CccHHHHHHHHHhc-----CCeeEEEecCCCce
Confidence 57899998 444 2 66667765 6667778888875 46677888888632 36788888887754
No 225
>TIGR02675 tape_meas_nterm tape measure domain. Proteins containing this domain are strictly bacterial, including bacteriophage and prophage regions of bacterial genomes. Most members are 800 to 1800 amino acids long, making them among the longest predicted proteins of their respective phage genomes, where they are encoded in tail protein regions. This roughly 80-residue domain described here usually begins between residue 100 and 250. Many members are known or predicted to act as phage tail tape measure proteins, a minor tail component that regulates tail length.
Probab=25.46 E-value=1.9e+02 Score=19.66 Aligned_cols=29 Identities=21% Similarity=0.235 Sum_probs=22.7
Q ss_pred HHHHHHHHhCCCHHHHHHHhcCCceeCHHH
Q 028125 154 IFKELSRKTGQPFEKITKDLSRIKRFGSQE 183 (213)
Q Consensus 154 ~~~~~a~~tg~~~~~i~~~~~~~~~~sa~E 183 (213)
+.+.+++.+|.+..++++++..+. +|+++
T Consensus 46 ~~~~lAk~~G~t~~~l~~~~~~Gk-it~~~ 74 (75)
T TIGR02675 46 ALQALAKAMGVTRGELRKMLSDGK-LTADV 74 (75)
T ss_pred HHHHHHHHhCCCHHHHHHHHHCCC-Ccccc
Confidence 567789999999999999987654 55543
No 226
>PRK14481 dihydroxyacetone kinase subunit DhaK; Provisional
Probab=25.24 E-value=3.2e+02 Score=24.47 Aligned_cols=57 Identities=12% Similarity=0.187 Sum_probs=30.5
Q ss_pred hHHHHHHHHHhhccCCCCCceEEEEeCCCCChhHHH-----HHHHHHHhcCCC-eEEEEcccc
Q 028125 44 FSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTL-----AIYDTMQSLKSP-VGTHCVGFA 100 (213)
Q Consensus 44 ~~~~l~~~l~~l~~~~~~~~I~l~INSpGG~v~~~~-----~I~~~i~~~~~~-v~t~~~G~a 100 (213)
.++.+++.|..--.-++.+.+.+.||.-||.-.-=+ .+.+.++..+.. +.+++..++
T Consensus 234 l~~~m~~~ll~~~~~~~gd~v~lLvN~LG~ts~lEl~i~~~~v~~~L~~~gi~i~r~~vG~~~ 296 (331)
T PRK14481 234 IAEELLEKILEDLKLVAGDEVLVLVNGMGATPLMELYIVYNDVAELLEERGVTVARSLVGNYM 296 (331)
T ss_pred HHHHHHHHHHhhcCCCCCCeEEEEEeCCCCCcHHHHHHHHHHHHHHHHHCCCEEEEEEeeccc
Confidence 344555555421122346789999999999843222 333444444544 444444333
No 227
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=25.08 E-value=1.5e+02 Score=28.64 Aligned_cols=89 Identities=17% Similarity=0.184 Sum_probs=59.3
Q ss_pred CCchhhhHHhhccCcEEEEccc----cCcchHHHHHHHHHhhccCCCCCceEEEEeCCCCChhHHHHHHHHHHhcCCCeE
Q 028125 18 SWQWVDLWNALYRERVIFIGQN----IDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVG 93 (213)
Q Consensus 18 ~~~~~~~~~~~~~~~iI~i~G~----I~~~~~~~l~~~l~~l~~~~~~~~I~l~INSpGG~v~~~~~I~~~i~~~~~~v~ 93 (213)
..+..++...+..+..|-+..| +|..++..+++.|+.+.+. .+.|.+-|+=|+.++..- +|.+--+..- .
T Consensus 175 ErkRvsia~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~--grtVi~tIHQPss~lf~l---FD~l~lLs~G-~ 248 (613)
T KOG0061|consen 175 ERKRVSIALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARS--GRTVICTIHQPSSELFEL---FDKLLLLSEG-E 248 (613)
T ss_pred hhhHHHHHHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhC--CCEEEEEEeCCcHHHHHH---HhHhhhhcCC-c
Confidence 3567889998888877776666 4556788999999987654 789999999999877543 3444333322 3
Q ss_pred EEEccccchHHHHHHhcCC
Q 028125 94 THCVGFAYHLAGFLLAGGE 112 (213)
Q Consensus 94 t~~~G~aaSaa~~I~~ag~ 112 (213)
++-.|.+.++--+...+|-
T Consensus 249 ~vy~G~~~~~~~ff~~~G~ 267 (613)
T KOG0061|consen 249 VVYSGSPRELLEFFSSLGF 267 (613)
T ss_pred EEEecCHHHHHHHHHhCCC
Confidence 3334555555555555543
No 228
>COG1160 Predicted GTPases [General function prediction only]
Probab=24.97 E-value=2e+02 Score=26.80 Aligned_cols=39 Identities=15% Similarity=0.234 Sum_probs=34.4
Q ss_pred CCCCceEEEEeCCCCChhHHHHHHHHHHhcCCCeEEEEc
Q 028125 59 DDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCV 97 (213)
Q Consensus 59 ~~~~~I~l~INSpGG~v~~~~~I~~~i~~~~~~v~t~~~ 97 (213)
...+.|.+.+|.-=|-..+-..|++.|+..++|++-++.
T Consensus 82 ~eADvilfvVD~~~Git~~D~~ia~~Lr~~~kpviLvvN 120 (444)
T COG1160 82 EEADVILFVVDGREGITPADEEIAKILRRSKKPVILVVN 120 (444)
T ss_pred HhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEE
Confidence 457799999999999999999999999988899887773
No 229
>PRK14483 DhaKLM operon coactivator DhaQ; Provisional
Probab=24.92 E-value=3.3e+02 Score=24.39 Aligned_cols=56 Identities=9% Similarity=0.017 Sum_probs=30.1
Q ss_pred HHHHHHHHHhhccCCCCCceEEEEeCCCCChhHHH-----HHHHHHHhcCCC-eEEEEcccc
Q 028125 45 SNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTL-----AIYDTMQSLKSP-VGTHCVGFA 100 (213)
Q Consensus 45 ~~~l~~~l~~l~~~~~~~~I~l~INSpGG~v~~~~-----~I~~~i~~~~~~-v~t~~~G~a 100 (213)
++.+++.|+.--.-++.+.+.+.||.-||.-.-=+ .+.+.++..+.. +.+++..++
T Consensus 235 ~~~l~~~ll~~~~~~~gd~v~vlVN~LG~ts~~El~i~~~~v~~~L~~~gi~v~r~~vG~~~ 296 (329)
T PRK14483 235 AIELVNKLKSKYRWQKGDNFILLINGLGATTLMEQYIFANDIRRLLELEGLQITFVKVGTLL 296 (329)
T ss_pred HHHHHHHHHhhcCcCCCCeEEEEEeCCCCCcHHHHHHHHHHHHHHHHHCCCEEEEeEeeccc
Confidence 44555555421122346689999999999843322 333445444544 344444333
No 230
>PHA02127 hypothetical protein
Probab=23.76 E-value=33 Score=21.74 Aligned_cols=6 Identities=67% Similarity=1.492 Sum_probs=4.7
Q ss_pred CCCCCC
Q 028125 1 MMPIGT 6 (213)
Q Consensus 1 ~~~~~~ 6 (213)
|||||+
T Consensus 33 m~pigt 38 (57)
T PHA02127 33 MLPVGT 38 (57)
T ss_pred cccccc
Confidence 788886
No 231
>PRK09726 antitoxin HipB; Provisional
Probab=23.62 E-value=2.2e+02 Score=19.70 Aligned_cols=64 Identities=11% Similarity=0.055 Sum_probs=38.4
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhcCCceeCHHH----HHHcCCceEecCCccc
Q 028125 136 QADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQE----ALEYGLIDRIIRPPRI 199 (213)
Q Consensus 136 ~~~d~~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~~~~~~sa~E----A~~~GLiD~I~~~~~~ 199 (213)
+++.+....+.+......-..-+++..|.+...+..+.++....+.+. |..+|+--.+....++
T Consensus 9 ~~~~l~~~lk~~R~~~gltq~elA~~~gvs~~tis~~e~g~~~ps~~~l~~ia~~lgv~~~~~~~~~~ 76 (88)
T PRK09726 9 SPTQLANAMKLVRQQNGWTQSELAKKIGIKQATISNFENNPDNTTLTTFFKILQSLELSMTLCDAKNA 76 (88)
T ss_pred CHHHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHCCCCCCCHHHHHHHHHHcCCCcchhcccCC
Confidence 345555555555444444456788999999999998887655555554 3345655444444333
No 232
>TIGR00673 cynS cyanate hydratase. Alternate names include cyanate lyase, cyanase and cyanate hydrolase.
Probab=22.76 E-value=1.1e+02 Score=24.21 Aligned_cols=33 Identities=15% Similarity=0.062 Sum_probs=27.5
Q ss_pred HHHHHHHhCCCHHHHHHHhcCCceeCHHHHHHc
Q 028125 155 FKELSRKTGQPFEKITKDLSRIKRFGSQEALEY 187 (213)
Q Consensus 155 ~~~~a~~tg~~~~~i~~~~~~~~~~sa~EA~~~ 187 (213)
.+-+++..|++...+.....+...+++++|..+
T Consensus 24 we~IAe~iG~sevwvaaa~lGQ~~ls~e~A~kl 56 (150)
T TIGR00673 24 FADIADGLGLAEVFVAAALYGQAAAPADEARLV 56 (150)
T ss_pred HHHHHHHHCCCHHHHHHHHhCCCCCCHHHHHHH
Confidence 356788889999888888877888999999875
No 233
>PRK14633 hypothetical protein; Provisional
Probab=22.54 E-value=1.8e+02 Score=22.69 Aligned_cols=54 Identities=13% Similarity=0.167 Sum_probs=30.6
Q ss_pred cCcchHHHHHHHHHh-hccCCC-CCceEEEEeCCCCChhHHHHHHHHHHhcCCCeEE
Q 028125 40 IDEEFSNQILATMLY-LDSVDD-SKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGT 94 (213)
Q Consensus 40 I~~~~~~~l~~~l~~-l~~~~~-~~~I~l~INSpGG~v~~~~~I~~~i~~~~~~v~t 94 (213)
|+-+.+..+.+++.. |+.++. ...-+|.+.|||=+ ..-...-+..+..+.+|..
T Consensus 44 v~lddC~~vSr~i~~~LD~~d~i~~~Y~LEVSSPGld-RpL~~~~~f~r~~G~~v~V 99 (150)
T PRK14633 44 VSVDDCQIVSKEISAVFDVEDPVSGKYILEVSSPGMN-RQIFNIIQAQALVGFNVKA 99 (150)
T ss_pred CCHHHHHHHHHHHHHHhccCcCCCCCeEEEEeCCCCC-CCCCCHHHHHHhCCCeEEE
Confidence 665556656555542 333333 35689999999965 1122334555666655444
No 234
>KOG1283 consensus Serine carboxypeptidases [Posttranslational modification, protein turnover, chaperones]
Probab=22.51 E-value=1.8e+02 Score=26.25 Aligned_cols=62 Identities=11% Similarity=0.159 Sum_probs=41.7
Q ss_pred HHHHhhccCCCCCceEEEEeCCCCChhH--HHHHHHHHHhcC--CCeEEEEccc--------cchHHHHHHhcC
Q 028125 50 ATMLYLDSVDDSKRVYMYINGPGGDVTP--TLAIYDTMQSLK--SPVGTHCVGF--------AYHLAGFLLAGG 111 (213)
Q Consensus 50 ~~l~~l~~~~~~~~I~l~INSpGG~v~~--~~~I~~~i~~~~--~~v~t~~~G~--------aaSaa~~I~~ag 111 (213)
.++.....+-+..+.+|+--|.||.+.+ ++.++++|++=. .....+++|- +.|-|-++..-+
T Consensus 110 k~f~~~h~e~~t~P~~If~ESYGGKma~k~al~l~~aIk~G~i~~nf~~VaLGDSWISP~D~V~SWGP~L~~~S 183 (414)
T KOG1283|consen 110 KGFFTNHPEFKTVPLYIFCESYGGKMAAKFALELDDAIKRGEIKLNFIGVALGDSWISPEDFVFSWGPLLKHVS 183 (414)
T ss_pred HHHHhcCccccccceEEEEhhcccchhhhhhhhHHHHHhcCceeecceeEEccCcccChhHhhhcchHHHHhhh
Confidence 3444344444567899999999999876 567889998854 4566676654 446676666533
No 235
>PRK14643 hypothetical protein; Provisional
Probab=22.51 E-value=1.8e+02 Score=23.22 Aligned_cols=58 Identities=12% Similarity=0.082 Sum_probs=30.6
Q ss_pred cccCcchHHHHHHHHHh-hccCCC-CCceEEEEeCCCCChhHHHHHHHHHHhcCCCeEEEE
Q 028125 38 QNIDEEFSNQILATMLY-LDSVDD-SKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHC 96 (213)
Q Consensus 38 G~I~~~~~~~l~~~l~~-l~~~~~-~~~I~l~INSpGG~v~~~~~I~~~i~~~~~~v~t~~ 96 (213)
|.|+-+.+..+.+++-. |+..+. ...-+|.+.|||=+= .-...-+..+..+.+|....
T Consensus 52 ggvtldDC~~vSr~is~~LD~~d~i~~~Y~LEVSSPGleR-pL~~~~df~r~~G~~V~V~l 111 (164)
T PRK14643 52 KPLDFDILIKANDLVSNKIDQFIKTSEKYLLEISSSGIEK-QIRSQEELVKALNQWVYVQL 111 (164)
T ss_pred CCcCHHHHHHHHHHHHHHhCccCCCCCCeEEEecCCCCCC-CCCCHHHHHHhcCCeEEEEE
Confidence 44666555555554442 333333 356789999999651 11122344455555555443
No 236
>TIGR00566 trpG_papA glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase. This model describes the glutamine amidotransferase domain or peptide of the tryptophan-biosynthetic pathway enzyme anthranilate synthase or of the folate biosynthetic pathway enzyme para-aminobenzoate synthase. In at least one case, a single polypeptide from Bacillus subtilis was shown to have both functions. This model covers a subset of the sequences described by the pfam model GATase.
Probab=21.79 E-value=89 Score=25.04 Aligned_cols=31 Identities=19% Similarity=0.339 Sum_probs=16.8
Q ss_pred CCCC-ChhHHHHHHHHHHh--cCCCeEEEEcccc
Q 028125 70 GPGG-DVTPTLAIYDTMQS--LKSPVGTHCVGFA 100 (213)
Q Consensus 70 SpGG-~v~~~~~I~~~i~~--~~~~v~t~~~G~a 100 (213)
|||- ++.+...-.+.++. .+.||..+|.|.-
T Consensus 50 sgGpg~p~~~~~~~~~i~~~~~~~PvLGIC~G~Q 83 (188)
T TIGR00566 50 SPGPCTPNEAGISLEAIRHFAGKLPILGVCLGHQ 83 (188)
T ss_pred cCCCCChhhcchhHHHHHHhccCCCEEEECHHHH
Confidence 5553 55442222334443 3689888887753
No 237
>cd07382 MPP_DR1281 Deinococcus radiodurans DR1281 and related proteins, metallophosphatase domain. DR1281 is an uncharacterized Deinococcus radiodurans protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=21.77 E-value=2.4e+02 Score=24.09 Aligned_cols=64 Identities=20% Similarity=0.151 Sum_probs=38.5
Q ss_pred cEEEEccccCcchHHHHHHHHHhhccCCCCCceEEEE-eCCCCChhHHHHHHHHHHhcCCCeEEEE
Q 028125 32 RVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYI-NGPGGDVTPTLAIYDTMQSLKSPVGTHC 96 (213)
Q Consensus 32 ~iI~i~G~I~~~~~~~l~~~l~~l~~~~~~~~I~l~I-NSpGG~v~~~~~I~~~i~~~~~~v~t~~ 96 (213)
|++||...+...-...+...|..+.++.+.+-+...- |+-||. --...+++.|+.++..+.|.-
T Consensus 1 ~ilfigdi~g~~G~~~~~~~l~~lk~~~~~D~vi~NgEn~~gg~-gl~~~~~~~L~~~G~D~iTlG 65 (255)
T cd07382 1 KILFIGDIVGKPGRKAVKEHLPKLKKEYKIDFVIANGENAAGGK-GITPKIAKELLSAGVDVITMG 65 (255)
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHHHHHCCCCEEEECCccccCCC-CCCHHHHHHHHhcCCCEEEec
Confidence 5777777777666666666666665544333222222 444552 123678888888888877764
No 238
>cd02787 MopB_CT_ydeP The MopB_CT_ydeP CD includes a group of related uncharacterized bacterial molybdopterin-binding oxidoreductase-like domains with a putative molybdopterin cofactor binding site. This CD is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs.
Probab=21.65 E-value=55 Score=23.64 Aligned_cols=17 Identities=12% Similarity=0.194 Sum_probs=15.3
Q ss_pred CceeCHHHHHHcCCceE
Q 028125 176 IKRFGSQEALEYGLIDR 192 (213)
Q Consensus 176 ~~~~sa~EA~~~GLiD~ 192 (213)
..+|++++|.++||.|.
T Consensus 32 ~v~i~p~dA~~lgI~dG 48 (112)
T cd02787 32 VVFMNPDDIARLGLKAG 48 (112)
T ss_pred EEEECHHHHHHhCCCCC
Confidence 37899999999999994
No 239
>CHL00188 hisH imidazole glycerol phosphate synthase subunit hisH; Provisional
Probab=21.39 E-value=1.2e+02 Score=24.99 Aligned_cols=30 Identities=20% Similarity=0.486 Sum_probs=17.5
Q ss_pred CCC-CChhHHH------HHHHHHHh---cCCCeEEEEccc
Q 028125 70 GPG-GDVTPTL------AIYDTMQS---LKSPVGTHCVGF 99 (213)
Q Consensus 70 SpG-G~v~~~~------~I~~~i~~---~~~~v~t~~~G~ 99 (213)
+|| |+...++ .+.+.|+. -+.|+..+|.|+
T Consensus 45 lPG~g~~~~~~~~l~~~gl~~~i~~~~~~~~pvlGIClG~ 84 (210)
T CHL00188 45 LPGVGSFDLAMKKLEKKGLITPIKKWIAEGNPFIGICLGL 84 (210)
T ss_pred ECCCCchHHHHHHHHHCCHHHHHHHHHHcCCCEEEECHHH
Confidence 699 6655442 12233333 257999888775
No 240
>PRK14639 hypothetical protein; Provisional
Probab=21.19 E-value=2.1e+02 Score=22.13 Aligned_cols=57 Identities=12% Similarity=0.142 Sum_probs=31.3
Q ss_pred ccCcchHHHHHHHHHh-hccCCC-CCceEEEEeCCCCChhHHHHHHHHHHhcCCCeEEEE
Q 028125 39 NIDEEFSNQILATMLY-LDSVDD-SKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHC 96 (213)
Q Consensus 39 ~I~~~~~~~l~~~l~~-l~~~~~-~~~I~l~INSpGG~v~~~~~I~~~i~~~~~~v~t~~ 96 (213)
.|+-+.+..+.+.+.. |+..+. ...-+|.+.|||=+ ..-...-+..+..+.+|....
T Consensus 37 gv~iddC~~vSr~is~~LD~~d~i~~~Y~LEVSSPGl~-RpL~~~~~f~r~~G~~v~v~l 95 (140)
T PRK14639 37 GVNLDDCERLSELLSPIFDVEPPVSGEYFLEVSSPGLE-RKLSKIEHFAKSIGELVKITT 95 (140)
T ss_pred CCCHHHHHHHHHHHHHHhccccccCCCeEEEEeCCCCC-CcCCCHHHHHHhCCCEEEEEE
Confidence 3666656666555542 333333 24678999999954 111223445566665555433
No 241
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=21.09 E-value=3.1e+02 Score=19.44 Aligned_cols=68 Identities=6% Similarity=-0.001 Sum_probs=46.7
Q ss_pred cEEEEccccCcchHHHHHHHHHhhccCCCCCceEEEEeC-CCCChhHHHHHHHHHHhcCCCeEEEEccccchHHHHHH
Q 028125 32 RVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYING-PGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLL 108 (213)
Q Consensus 32 ~iI~i~G~I~~~~~~~l~~~l~~l~~~~~~~~I~l~INS-pGG~v~~~~~I~~~i~~~~~~v~t~~~G~aaSaa~~I~ 108 (213)
.+.+++..+.. +.+.+.+... +.+ .+-+++ ..........+.+.++.....+.+++.|..+|...-.+
T Consensus 30 ~v~~~d~~~~~---~~l~~~~~~~----~pd--~V~iS~~~~~~~~~~~~l~~~~k~~~p~~~iv~GG~~~t~~~~~~ 98 (121)
T PF02310_consen 30 EVDILDANVPP---EELVEALRAE----RPD--VVGISVSMTPNLPEAKRLARAIKERNPNIPIVVGGPHATADPEEI 98 (121)
T ss_dssp EEEEEESSB-H---HHHHHHHHHT----TCS--EEEEEESSSTHHHHHHHHHHHHHTTCTTSEEEEEESSSGHHHHHH
T ss_pred eEEEECCCCCH---HHHHHHHhcC----CCc--EEEEEccCcCcHHHHHHHHHHHHhcCCCCEEEEECCchhcChHHH
Confidence 45555554433 5566665522 122 255566 78888999999999999988899999999888776553
No 242
>PF03855 M-factor: M-factor; InterPro: IPR005555 The M-factor is a pheromone produced upon nitrogen starvation. The production of M-factor is increased by the pheromone signal. The protein undergoes post-translational modification to remove the C-terminal signal peptide, the carboxy-terminal cysteine residue is carboxy-methylated and S-alkylated with a farnesyl residue [].
Probab=21.02 E-value=39 Score=20.44 Aligned_cols=7 Identities=71% Similarity=0.975 Sum_probs=5.7
Q ss_pred CCeeeee
Q 028125 6 TPKVLYR 12 (213)
Q Consensus 6 ~~~~~~~ 12 (213)
+|||||-
T Consensus 34 tpkvpym 40 (44)
T PF03855_consen 34 TPKVPYM 40 (44)
T ss_pred CCCCceE
Confidence 7999984
No 243
>PRK14641 hypothetical protein; Provisional
Probab=20.81 E-value=2e+02 Score=23.21 Aligned_cols=54 Identities=9% Similarity=0.092 Sum_probs=28.8
Q ss_pred cCcchHHHHHHHHHh-hccCCCC-----CceEEEEeCCCCChhHHHHHHHHHHhcCCCeEE
Q 028125 40 IDEEFSNQILATMLY-LDSVDDS-----KRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGT 94 (213)
Q Consensus 40 I~~~~~~~l~~~l~~-l~~~~~~-----~~I~l~INSpGG~v~~~~~I~~~i~~~~~~v~t 94 (213)
|+-+.+..+...+.. |+.++.. ..-+|.+.|||=+= .-....+..+..+..|..
T Consensus 50 v~lDdC~~vSr~Is~~LD~~d~i~~~~~~~Y~LEVSSPGldR-pL~~~~~f~r~~G~~V~V 109 (173)
T PRK14641 50 IRIDQCAFFSRRIRERLEEDEELLGLVGEDFDLMVSSPGLGE-PIILPRQYGRHVGRLLRV 109 (173)
T ss_pred CCHHHHHHHHHHHHHHhCcccccccCCCCCeEEEEeCCCCCC-cCCCHHHHHHhCCCEEEE
Confidence 555555555555542 3333322 47789999999651 112234555555554444
No 244
>PRK14647 hypothetical protein; Provisional
Probab=20.78 E-value=1.9e+02 Score=22.73 Aligned_cols=54 Identities=17% Similarity=0.115 Sum_probs=28.7
Q ss_pred cCcchHHHHHHHHHh-hccCCC-CCceEEEEeCCCCC-hhHHHHHHHHHHhcCCCeEEE
Q 028125 40 IDEEFSNQILATMLY-LDSVDD-SKRVYMYINGPGGD-VTPTLAIYDTMQSLKSPVGTH 95 (213)
Q Consensus 40 I~~~~~~~l~~~l~~-l~~~~~-~~~I~l~INSpGG~-v~~~~~I~~~i~~~~~~v~t~ 95 (213)
|+-+.+..+...+.. |+..+. ...-+|.+.|||=+ ..- ..-+..+..+.+|...
T Consensus 49 vslddC~~vSr~is~~LD~~d~i~~~Y~LEVSSPG~~RpL~--~~~~f~r~~G~~v~V~ 105 (159)
T PRK14647 49 VNLDDCAEVSRELSEILDVEDFIPERYTLEVSSPGLDRPLK--KEADYERYAGRLVKVR 105 (159)
T ss_pred CCHHHHHHHHHHHHHHHcccccCCCCeEEEEcCCCCCCcCC--CHHHHHHhCCcEEEEE
Confidence 655555555555542 333333 24679999999954 221 2334445555554443
No 245
>PRK14630 hypothetical protein; Provisional
Probab=20.74 E-value=2.1e+02 Score=22.19 Aligned_cols=57 Identities=7% Similarity=-0.076 Sum_probs=30.5
Q ss_pred ccCcchHHHHHHHHHhhccCCCCCceEEEEeCCCCChhHHHHHHHHHHhcCCCeEEEE
Q 028125 39 NIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHC 96 (213)
Q Consensus 39 ~I~~~~~~~l~~~l~~l~~~~~~~~I~l~INSpGG~v~~~~~I~~~i~~~~~~v~t~~ 96 (213)
.|+-+.+..+.+++..+-.+.-...-+|.+.|||=+= .-...-+..+..+.++....
T Consensus 48 gV~idDC~~vSr~i~~~ld~~i~~~Y~LEVSSPGldR-pL~~~~df~r~~G~~v~V~l 104 (143)
T PRK14630 48 SFGVDTLCDLHKMILLILEAVLKYNFSLEISTPGINR-KIKSDREFKIFEGKKIKLML 104 (143)
T ss_pred CCCHHHHHHHHHHHHHHhcccCCCCeEEEEeCCCCCC-cCCCHHHHHHhCCCEEEEEE
Confidence 3665555555555543212222356789999999651 11233345566655555433
No 246
>PRK14646 hypothetical protein; Provisional
Probab=20.55 E-value=2e+02 Score=22.62 Aligned_cols=55 Identities=11% Similarity=-0.032 Sum_probs=30.5
Q ss_pred cCcchHHHHHHHHHh-hccCCC-CCceEEEEeCCCCChhHHHHHHHHHHhcCCCeEEE
Q 028125 40 IDEEFSNQILATMLY-LDSVDD-SKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTH 95 (213)
Q Consensus 40 I~~~~~~~l~~~l~~-l~~~~~-~~~I~l~INSpGG~v~~~~~I~~~i~~~~~~v~t~ 95 (213)
|+-+.+..+..++.. |+.++. ...-+|.+.|||=+= .-...-+..+..+.+|...
T Consensus 50 VtldDC~~vSr~is~~LD~~D~i~~~Y~LEVSSPGldR-pL~~~~df~r~~G~~v~V~ 106 (155)
T PRK14646 50 ISLDDCALFNTPASEEIENSNLLNCSYVLEISSQGVSD-ELTSERDFKTFKGFPVNVE 106 (155)
T ss_pred ccHHHHHHHHHHHHHHhCcCCCCCCCeEEEEcCCCCCC-cCCCHHHHHHhCCCEEEEE
Confidence 665555555555542 333333 256789999999651 1122345556666555543
No 247
>PRK14638 hypothetical protein; Provisional
Probab=20.54 E-value=2.1e+02 Score=22.36 Aligned_cols=58 Identities=14% Similarity=0.042 Sum_probs=32.0
Q ss_pred cccCcchHHHHHHHHHh-hccCCC-CCceEEEEeCCCCChhHHHHHHHHHHhcCCCeEEEE
Q 028125 38 QNIDEEFSNQILATMLY-LDSVDD-SKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHC 96 (213)
Q Consensus 38 G~I~~~~~~~l~~~l~~-l~~~~~-~~~I~l~INSpGG~v~~~~~I~~~i~~~~~~v~t~~ 96 (213)
|.|+-+.+..+...|.. |+.++. ...-+|.+.|||=+= +-...-+..+..+.+|....
T Consensus 48 G~v~lddC~~vSr~is~~LD~~d~i~~~Y~LEVSSPGldR-pL~~~~~f~r~~G~~v~V~~ 107 (150)
T PRK14638 48 GYVSVRDCELFSREIERFLDREDLIEHSYTLEVSSPGLDR-PLRGPKDYVRFTGKLAKIVT 107 (150)
T ss_pred CCcCHHHHHHHHHHHHHHhccccccCCceEEEEeCCCCCC-CCCCHHHHHHhCCCEEEEEE
Confidence 44776666666666653 333332 246789999999651 11223344455555555444
No 248
>TIGR02363 dhaK1 dihydroxyacetone kinase, DhaK subunit. Two types of dihydroxyacetone kinase (glycerone kinase) are described. In yeast and a few bacteria, e.g. Citrobacter freundii, the enzyme is a single chain that uses ATP as phosphoryl donor and is designated EC 2.7.1.29. By contract, E. coli and many other bacterial species have a multisubunit form (EC 2.7.1.-) with a phosphoprotein donor related to PTS transport proteins. This family represents the DhaK subunit of the latter type of dihydroxyacetone kinase, but it specifically excludes the DhaK paralog DhaK2 (TIGR02362) found in the same operon as DhaK and DhaK in the Firmicutes.
Probab=20.46 E-value=4.6e+02 Score=23.45 Aligned_cols=56 Identities=16% Similarity=0.212 Sum_probs=29.6
Q ss_pred HHHHHHHHHhhccCCCCCceEEEEeCCCCChhHHH-HH----HHHHHhcCCC-eEEEEcccc
Q 028125 45 SNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTL-AI----YDTMQSLKSP-VGTHCVGFA 100 (213)
Q Consensus 45 ~~~l~~~l~~l~~~~~~~~I~l~INSpGG~v~~~~-~I----~~~i~~~~~~-v~t~~~G~a 100 (213)
++.+++.|..--.-++.+.+.+.||.-||.-.-=+ .+ .+.++..+.. +.+++..++
T Consensus 236 ~~~l~~~l~~~~~~~~gd~v~vlvN~LG~ts~lEl~i~~~~v~~~L~~~gi~v~r~~vG~~~ 297 (329)
T TIGR02363 236 ADELLDKLLDDLGLQSGDRVIVLVNGMGATPLMELYIFYNDVQRLLEQRGVNVARTLVGNYM 297 (329)
T ss_pred HHHHHHHHHhhcCCCCCCeEEEEEeCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEeeccc
Confidence 44555555421122346689999999999843322 22 3444444444 344444333
No 249
>PF14566 PTPlike_phytase: Inositol hexakisphosphate; PDB: 1U24_A 2PSZ_B 3MOZ_A 3D1H_B 2B4P_B 3D1Q_A 2B4O_A 3MMJ_B 1U25_A 1U26_B ....
Probab=20.43 E-value=3.4e+02 Score=20.87 Aligned_cols=58 Identities=12% Similarity=0.224 Sum_probs=33.9
Q ss_pred hHHhhc--cCcEEEEccccCcch------HHHHHHHHHhhccCCCCCceEEEEeCCCCC--hhHHHHHHHHHH
Q 028125 24 LWNALY--RERVIFIGQNIDEEF------SNQILATMLYLDSVDDSKRVYMYINGPGGD--VTPTLAIYDTMQ 86 (213)
Q Consensus 24 ~~~~~~--~~~iI~i~G~I~~~~------~~~l~~~l~~l~~~~~~~~I~l~INSpGG~--v~~~~~I~~~i~ 86 (213)
.+++.. ...+-|..=+|.++. .+.|++.+..+ .+.--|++|+..|. -+.++.||++|+
T Consensus 82 ~~e~~~~~~~g~~Y~Ripitd~~~P~~~~iD~fi~~v~~~-----p~~~~l~fhC~~G~GRTTt~Mv~~~li~ 149 (149)
T PF14566_consen 82 VTEEELVEGNGLRYYRIPITDHQAPDPEDIDAFINFVKSL-----PKDTWLHFHCQAGRGRTTTFMVMYDLIR 149 (149)
T ss_dssp E-HHHHHHHTT-EEEEEEE-TTS---HHHHHHHHHHHHTS------TT-EEEEE-SSSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCceEEEEeCCCcCCCCHHHHHHHHHHHHhC-----CCCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 355443 446666666666653 45566655533 23567888888876 788889998875
No 250
>PF00216 Bac_DNA_binding: Bacterial DNA-binding protein; InterPro: IPR000119 Bacteria synthesise a set of small, usually basic proteins of about 90 residues that bind DNA and are known as histone-like proteins [, ]. Examples include the HU protein in Escherichia coli is a dimer of closely related alpha and beta chains and in other bacteria can be a dimer of identical chains. HU-type proteins have been found in a variety of eubacteria, cyanobacteria and archaebacteria, and are also encoded in the chloroplast genome of some algae []. The integration host factor (IHF), a dimer of closely related chains which seem to function in genetic recombination as well as in translational and transcriptional control [] is found in enterobacteria and viral proteins include the African Swine fever virus protein A104R (or LMW5-AR) []. The exact function of these proteins is not yet clear but they are capable of wrapping DNA and stabilising it from denaturation under extreme environmental conditions. The structure is known for one of these proteins []. The protein exists as a dimer and two "beta-arms" function as the non-specific binding site for bacterial DNA. ; GO: 0003677 DNA binding; PDB: 3C4I_B 2O97_A 1MUL_A 1P78_A 1P51_C 1P71_B 2HT0_A 1OWG_A 2IIF_A 1OUZ_A ....
Probab=20.41 E-value=1.2e+02 Score=20.84 Aligned_cols=39 Identities=23% Similarity=0.193 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHhcCCceeCHHHHHHcCCc
Q 028125 151 RDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLI 190 (213)
Q Consensus 151 ~~~~~~~~a~~tg~~~~~i~~~~~~~~~~sa~EA~~~GLi 190 (213)
++.+.+.++++++++..++.+.++. .+-.-.+++..|=.
T Consensus 3 k~eli~~ia~~~~~s~~~v~~vl~~-~~~~i~~~L~~g~~ 41 (90)
T PF00216_consen 3 KKELIKRIAEKTGLSKKDVEAVLDA-LFDVIKEALKEGES 41 (90)
T ss_dssp HHHHHHHHHHHHTSSHHHHHHHHHH-HHHHHHHHHHTT-E
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHH-HHHHHHHHHhcCCe
Confidence 3567888899999999988887763 33334555555433
No 251
>PF07553 Lipoprotein_Ltp: Host cell surface-exposed lipoprotein; InterPro: IPR011434 This domain is found as 1-3 copies in a small family of proteins of unknown function.
Probab=20.35 E-value=1.7e+02 Score=18.44 Aligned_cols=30 Identities=17% Similarity=0.173 Sum_probs=22.1
Q ss_pred HHHHHHHhCCCHHHHHHHhcCC--ceeCHHHH
Q 028125 155 FKELSRKTGQPFEKITKDLSRI--KRFGSQEA 184 (213)
Q Consensus 155 ~~~~a~~tg~~~~~i~~~~~~~--~~~sa~EA 184 (213)
.+.|.+..++|.+.+.+.+..+ --||.+||
T Consensus 10 Ak~Y~~~~~~Sk~~l~~QL~se~ge~Ft~e~A 41 (48)
T PF07553_consen 10 AKSYLKTMHMSKQGLYDQLTSEYGEGFTEEEA 41 (48)
T ss_pred HHHHHHhccCCHHHHHHHHHhhcccCCCHHHH
Confidence 4567777889999888877543 45887776
No 252
>PRK10753 transcriptional regulator HU subunit alpha; Provisional
Probab=20.18 E-value=1.3e+02 Score=21.27 Aligned_cols=36 Identities=14% Similarity=0.140 Sum_probs=26.2
Q ss_pred HHHHHHHHHHhCCCHHHHHHHhcCCceeCHHHHHHcC
Q 028125 152 DYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYG 188 (213)
Q Consensus 152 ~~~~~~~a~~tg~~~~~i~~~~~~~~~~sa~EA~~~G 188 (213)
..|.+.+++.++++..++.+.++. .+=.-.+++..|
T Consensus 4 ~eli~~ia~~~~~s~~~~~~~v~~-~~~~i~~~L~~g 39 (90)
T PRK10753 4 TQLIDVIADKAELSKTQAKAALES-TLAAITESLKEG 39 (90)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHH-HHHHHHHHHHcC
Confidence 457778889999999998888763 333456777665
Done!