Query 028126
Match_columns 213
No_of_seqs 118 out of 229
Neff 4.9
Searched_HMMs 46136
Date Fri Mar 29 06:39:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028126.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028126hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0836 F-actin capping protei 100.0 3E-57 6.4E-62 399.1 12.8 167 5-171 2-261 (282)
2 PF01267 F-actin_cap_A: F-acti 100.0 1.3E-55 2.8E-60 392.1 11.9 160 11-170 1-253 (271)
3 PF01115 F_actin_cap_B: F-acti 76.3 57 0.0012 29.4 11.6 83 12-102 1-96 (242)
4 KOG3174 F-actin capping protei 48.7 18 0.00038 32.9 3.0 68 7-86 1-71 (275)
5 PF01267 F-actin_cap_A: F-acti 46.0 15 0.00033 33.1 2.3 112 42-159 107-247 (271)
6 PF07661 MORN_2: MORN repeat v 44.3 21 0.00046 19.1 1.9 15 103-117 4-18 (22)
7 PF08265 YL1_C: YL1 nuclear pr 36.0 16 0.00036 22.6 0.6 14 83-96 9-22 (30)
8 PF13708 Methyltransf_27: Meth 31.8 2E+02 0.0042 24.5 6.7 69 6-77 23-95 (194)
9 PLN03113 DNA ligase 1; Provisi 30.3 82 0.0018 32.6 4.8 32 6-40 259-290 (744)
10 cd06239 Peptidase_M14-like_1_2 26.6 21 0.00045 31.5 -0.1 46 160-205 166-213 (231)
11 PF12574 120_Rick_ant: 120 KDa 25.5 1.1E+02 0.0023 27.8 4.2 80 32-116 88-185 (255)
12 PF08006 DUF1700: Protein of u 25.2 68 0.0015 26.5 2.8 35 7-41 1-35 (181)
13 cd00495 Ribosomal_L25_TL5_CTC 22.2 1.3E+02 0.0029 22.2 3.6 47 47-100 44-90 (91)
14 PF14969 DUF4508: Domain of un 22.0 1.3E+02 0.0029 23.6 3.6 36 7-42 15-50 (98)
15 COG0641 AslB Arylsulfatase reg 20.8 2.3E+02 0.0049 26.9 5.6 61 7-69 37-124 (378)
16 PF08863 YolD: YolD-like prote 20.7 71 0.0015 23.0 1.8 17 103-119 45-61 (92)
17 PF14201 DUF4318: Domain of un 20.7 1.5E+02 0.0033 21.9 3.5 30 46-75 17-46 (74)
No 1
>KOG0836 consensus F-actin capping protein, alpha subunit [Cytoskeleton]
Probab=100.00 E-value=3e-57 Score=399.07 Aligned_cols=167 Identities=34% Similarity=0.544 Sum_probs=163.3
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCcHHHHHHHHHHhhCCCccchHHHhhhHHHHhhhCceeeEcCCCCCeeEEeeccccCCC
Q 028126 5 VELNPKQKKEIAKWFLLNSPAGEIQYVAKDLRLVLNDNEVYDEAVSESFPIYNKSHMICLQMPAGAGDVLVTSFGELGEN 84 (213)
Q Consensus 5 ~~mS~~ek~~Ii~~fI~~APPGE~neV~~DLr~Ll~dd~~~~~~i~~a~~~YN~eq~~~V~l~g~~~~vIIS~~nkl~~~ 84 (213)
.+||+++|++||++||++|||||||+|++|||.|+.+|.++++++.+||++||++||+||+++|..++||||+||+++++
T Consensus 2 ~~lS~~~k~rii~kfi~~APPGEfneVf~Dlr~ll~~d~l~~e~~~~A~~qYn~~~~vpv~i~g~~~~viIS~~n~lg~~ 81 (282)
T KOG0836|consen 2 SELSDAEKVRIISKFILHAPPGEFNEVFNDLRLLLSNDELLKEAAHEAFAQYNVDQMVPVEIDGGANQVIISEYNDLGNN 81 (282)
T ss_pred CcccHHHHHHHHHHHHhhCCChHHHHHHHHHHHHhcchhHHHHHHHHHHHHhchhcceeEecCCCCCceEEecccccCcc
Confidence 47999999999999999999999999999999999999999999999999999999999999998899999999999999
Q ss_pred ceecCCCCeEEEEecccc--------------------------------------------------------------
Q 028126 85 EYLDPRTAQVAIVDHVKQ-------------------------------------------------------------- 102 (213)
Q Consensus 85 ry~DP~sk~sF~~DHl~~-------------------------------------------------------------- 102 (213)
|||||+++++|+|||+++
T Consensus 82 rf~Dp~~k~sFk~dhl~kea~d~qp~~~~~~~~E~~r~~l~~~l~~y~~~hy~~~~t~~vkk~dg~~~~l~icIesh~y~ 161 (282)
T KOG0836|consen 82 RFLDPVNKKSFKYDHLRKEAEDVQPYEAEINIIEIWRYALDAQLKKYVSDHYPKGVTFVVKKSDGEQETLTICIESHQYQ 161 (282)
T ss_pred eecchhhceeeeHHHHHHHhccCCCcchhhhhhHHHHHHHHHHHHHHHHhccCCCceEEEeccCCcceEEEEEEeecccC
Confidence 999999999999999988
Q ss_pred ----------------------------eeeEEEeeeeEEEeecccccccccccCCCccHHHHHHHHHHHHHHHHHHHHH
Q 028126 103 ----------------------------VGAHYFEEGNVQLDAKHECGDSTLFQSPDDSAISISNILRHHETEYLASLEV 154 (213)
Q Consensus 103 ----------------------------V~VHYYEDGNVqL~ssK~v~~s~~~~~~~~~A~~IVk~I~~~En~yQ~~L~e 154 (213)
|||||||||||||.++|++.+++.++++.+.|+++++.|+++|++||+++++
T Consensus 162 pkNfwNG~WRS~w~~~v~~~~~l~G~i~vqvHYyEdGNV~l~s~Kd~qds~~vsn~~q~a~e~~~iI~~~Eneyq~ai~e 241 (282)
T KOG0836|consen 162 PKNFWNGRWRSEWNYDVQPTTELKGRIKVQVHYYEDGNVQLVSSKDIQDSLTVSNEVQTAKEFIKIIEEAENEYQAAISE 241 (282)
T ss_pred cccccCCceeeeeeeccCchheeeeEEEEEEEEEecCcEEEEecCcchhhheeechHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999999999999999999999999999999
Q ss_pred hcccc---cchhhhhhhhhh
Q 028126 155 LNFLL---IFKCLIIYSLVL 171 (213)
Q Consensus 155 ~f~~L---tFKaLRr~~~~~ 171 (213)
+|++| +||+|||+.-|-
T Consensus 242 ~yq~lsD~tFKaLRRqLPVT 261 (282)
T KOG0836|consen 242 NYQTLSDTTFKALRRQLPVT 261 (282)
T ss_pred HHHhcChhHHHHHHhhCCce
Confidence 99999 999999998774
No 2
>PF01267 F-actin_cap_A: F-actin capping protein alpha subunit; InterPro: IPR002189 This entry represents a component of the WASH complex. The WASH complex is present at the surface of endosomes and recruits and activates the Arp2/3 complex to induce actin polymerisation. The WASH complex plays a key role in the fission of tubules that serve as transport intermediates during endosome sorting []. The WASH complex's subunit structure: F-actin-capping protein subunit alpha (CAPZA1, CAPZA2 or CAPZA3), F-actin-capping protein subunit beta (CAPZB), WASH (WASH1, WASH2P, WASH3P, WASH4P, WASH5P or WASH6P), FAM21 (FAM21A, FAM21B or FAM21C), KIAA1033, KIAA0196 (strumpellin) and CCDC53. The actin filament system, a prominent part of the cytoskeleton in eukaryotic cells, is both a static structure and a dynamic network that can undergo rearrangements: it is thought to be involved in processes such as cell movement and phagocytosis [], as well as muscle contraction. The F-actin capping protein binds in a calcium-independent manner to the fast growing ends of actin filaments (barbed end) thereby blocking the exchange of subunits at these ends. Unlike gelsolin and severin this protein does not sever actin filaments. The F-actin capping protein is a heterodimer composed of two unrelated subunits: alpha and beta (see IPR001698 from INTERPRO). Neither of the subunits shows sequence similarity to other filament-capping proteins []. The alpha subunit is a protein of about 268 to 286 amino acid residues whose sequence is well conserved in eukaryotic species [].; GO: 0003779 actin binding, 0030036 actin cytoskeleton organization, 0008290 F-actin capping protein complex; PDB: 1MQ1_D 1MWN_X 2KBM_Y 2KZ7_A 3AAE_C 3AA6_A 3LK4_G 1IZN_A 3AA7_A 3AAA_A ....
Probab=100.00 E-value=1.3e-55 Score=392.08 Aligned_cols=160 Identities=35% Similarity=0.590 Sum_probs=143.4
Q ss_pred HHHHHHHHHhhcCCCCcHHHHHHHHHHhhCCCccchHHHhhhHHHHhhhCceeeEcCCCCCeeEEeeccccCCCceecCC
Q 028126 11 QKKEIAKWFLLNSPAGEIQYVAKDLRLVLNDNEVYDEAVSESFPIYNKSHMICLQMPAGAGDVLVTSFGELGENEYLDPR 90 (213)
Q Consensus 11 ek~~Ii~~fI~~APPGE~neV~~DLr~Ll~dd~~~~~~i~~a~~~YN~eq~~~V~l~g~~~~vIIS~~nkl~~~ry~DP~ 90 (213)
||++||++||++|||||+++|++|||.|++||.++++++++|+++||++||+||++||.+++||||+||+++++||+||+
T Consensus 1 ek~~ii~~fl~~aPPGE~~~V~~Dlr~l~~dd~~~~~~i~~a~~~yn~~q~~~v~~~~~~~~viis~~n~~~~~ry~Dp~ 80 (271)
T PF01267_consen 1 EKVEIISSFLLQAPPGEFNEVFNDLRTLLGDDSLLKEGIAEAFEQYNEEQFIPVKLPGSDHKVIISKYNKLGGNRYFDPR 80 (271)
T ss_dssp HHHHHHHHHHHT--TT-HHHHHHHHHHHHT-HHHHHHHSHHHHHHHHHHTTEEE--TTSSS-EEE-GGGBESTTEEEETT
T ss_pred CHHHHHHHHHHcCCCccHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHCcEEEEeCCCCcceEEecccccCCCeEEEec
Confidence 68999999999999999999999999999999999999999999999999999999998889999999999999999999
Q ss_pred CCeEEEEecccc--------------------------------------------------------------------
Q 028126 91 TAQVAIVDHVKQ-------------------------------------------------------------------- 102 (213)
Q Consensus 91 sk~sF~~DHl~~-------------------------------------------------------------------- 102 (213)
++++|+|||+++
T Consensus 81 ~~~~F~~DHl~~~~~d~e~~~~~~~~~e~~R~~l~~~l~~Yv~~hy~~g~~~V~~~~~~~~~~l~i~I~~~k~n~~Nfwn 160 (271)
T PF01267_consen 81 SKKSFSVDHLKQKASDVEPYEPPDEELESYRDALDKALEKYVKEHYPSGACGVYPKSEEDKETLVICIVAHKYNPKNFWN 160 (271)
T ss_dssp TTEEEEEETTTTEEEEEEE-----TSSHHHHHHHHHHHHHHHHHHSTTEEEEEEEEEETTEEEEEEEEEEEEEEGGGTEE
T ss_pred cCcEEEEeeeccEEccCccccccccchHHHHHHHHHHHHHHHHHhccCceeEEEeccCCCccEEEEEEEecccccccccC
Confidence 999999999998
Q ss_pred ----------------------eeeEEEeeeeEEEeecccccccccccCCCccHHHHHHHHHHHHHHHHHHHHHhcccc-
Q 028126 103 ----------------------VGAHYFEEGNVQLDAKHECGDSTLFQSPDDSAISISNILRHHETEYLASLEVLNFLL- 159 (213)
Q Consensus 103 ----------------------V~VHYYEDGNVqL~ssK~v~~s~~~~~~~~~A~~IVk~I~~~En~yQ~~L~e~f~~L- 159 (213)
|+|||||||||||+++|+++.++.++++.++|++||++|+++|++||++|+++|++|
T Consensus 161 G~WrS~w~~~~~~~~~l~G~I~V~vHYyEdGNVqL~~~k~~~~~~~~~~~~~~a~~iv~~I~~~E~~~q~~L~e~~~~ls 240 (271)
T PF01267_consen 161 GRWRSEWTVDFSSSGTLSGKIKVQVHYYEDGNVQLNSSKEVSETVSVSNDEQFASDIVKAIKEAENKYQTSLNESYNNLS 240 (271)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEEE-TTEEEEEEEEEEEEEEEE--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceeeEEEEEecCCCceEEEEEEeeEEEEeecEEEEEEccccceeeccCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999998888788999999999999999999999999999
Q ss_pred --cchhhhhhhhh
Q 028126 160 --IFKCLIIYSLV 170 (213)
Q Consensus 160 --tFKaLRr~~~~ 170 (213)
+||+|||+.-|
T Consensus 241 ~~tFK~LRR~LPV 253 (271)
T PF01267_consen 241 EKTFKALRRQLPV 253 (271)
T ss_dssp HTHHHHHS-SS-T
T ss_pred HHHHHHhhhhCCC
Confidence 99999999754
No 3
>PF01115 F_actin_cap_B: F-actin capping protein, beta subunit; InterPro: IPR001698 This entry represents a component of the WASH complex. The WASH complex is present at the surface of endosomes and recruits and activates the Arp2/3 complex to induce actin polymerisation. The WASH complex plays a key role in the fission of tubules that serve as transport intermediates during endosome sorting []. The WASH complex's subunit structure: F-actin-capping protein subunit alpha (CAPZA1, CAPZA2 or CAPZA3), F-actin-capping protein subunit beta (CAPZB), WASH (WASH1, WASH2P, WASH3P, WASH4P, WASH5P or WASH6P), FAM21 (FAM21A, FAM21B or FAM21C), KIAA1033, KIAA0196 (strumpellin) and CCDC53. The actin filament system, a prominent part of the cytoskeleton in eukaryotic cells, is both a static structure and a dynamic network that can undergo rearrangements: it is thought to be involved in processes such as cell movement and phagocytosis [], as well as muscle contraction. The F-actin capping protein binds in a calcium-independent manner to the fast growing ends of actin filaments (barbed end) thereby blocking the exchange of subunits at these ends. Unlike gelsolin (see IPR007122 from INTERPRO) and severin this protein does not sever actin filaments. The F-actin capping protein is a heterodimer composed of two unrelated subunits: alpha and beta. Neither of the subunits shows sequence similarity to other filament-capping proteins []. The beta subunit is a protein of about 280 amino acid residues whose sequence is well conserved in eukaryotic species [].; GO: 0003779 actin binding, 0030036 actin cytoskeleton organization, 0005737 cytoplasm, 0008290 F-actin capping protein complex; PDB: 3AAE_D 3LK4_Q 2KXP_B 2KZ7_B 3AA1_B 3LK2_B 3AA7_B 3AAA_B 1IZN_B 3AA0_B ....
Probab=76.30 E-value=57 Score=29.41 Aligned_cols=83 Identities=18% Similarity=0.220 Sum_probs=47.0
Q ss_pred HHHHHHHHhhcCCCCcHHHHHHHHHHhhCCCccchHHHhhhHHHHhhhCceeeEc-CCCCCeeEEeeccccC-------C
Q 028126 12 KKEIAKWFLLNSPAGEIQYVAKDLRLVLNDNEVYDEAVSESFPIYNKSHMICLQM-PAGAGDVLVTSFGELG-------E 83 (213)
Q Consensus 12 k~~Ii~~fI~~APPGE~neV~~DLr~Ll~dd~~~~~~i~~a~~~YN~eq~~~V~l-~g~~~~vIIS~~nkl~-------~ 83 (213)
|.+.+-+++..=||-.+.+-+++|..|.++ +.+.+... .+|-..|.- +.....+|.|.||+-+ .
T Consensus 1 k~d~aLdLlRRlpP~~ie~nl~~l~~L~Pd---l~edLLss-----VD~PLkv~~d~~~~k~yL~CdYNRDgDSYRSPwS 72 (242)
T PF01115_consen 1 KLDAALDLLRRLPPKKIEKNLSNLIDLVPD---LTEDLLSS-----VDQPLKVARDKETGKDYLLCDYNRDGDSYRSPWS 72 (242)
T ss_dssp HHHHHHHHHTTS-GGGHHHHHHHHHHHSGG---GHHHHHHH-----S----EEEEETTTTEEEEESGGGEETTEEE-TTT
T ss_pred ChhHHHHHHhhCChHHHHHHHHHHHHHHHH---HHHHHHHh-----CCCcceEEEchhhCCeeEeecccCCcccccCCCC
Confidence 356677899999999999999999999874 23333333 334433333 3334679999999943 2
Q ss_pred CceecCCC-----CeEEEEecccc
Q 028126 84 NEYLDPRT-----AQVAIVDHVKQ 102 (213)
Q Consensus 84 ~ry~DP~s-----k~sF~~DHl~~ 102 (213)
++|+-|-. --.+-=++|++
T Consensus 73 NkY~P~~~~~~~~dg~~PS~~LR~ 96 (242)
T PF01115_consen 73 NKYYPPLEGDDLEDGPVPSERLRK 96 (242)
T ss_dssp --EES--S-----S-----HHHHH
T ss_pred cccCCCccccccCCCCCChHHHHH
Confidence 45655555 34455555555
No 4
>KOG3174 consensus F-actin capping protein, beta subunit [Cytoskeleton]
Probab=48.66 E-value=18 Score=32.92 Aligned_cols=68 Identities=15% Similarity=0.190 Sum_probs=44.2
Q ss_pred CCHHHHHHHHHHHhhcCCCCcHHHHHHHHHHhhCCCccchHHHhhhHHHHhhhCceeeEcC---CCCCeeEEeeccccCC
Q 028126 7 LNPKQKKEIAKWFLLNSPAGEIQYVAKDLRLVLNDNEVYDEAVSESFPIYNKSHMICLQMP---AGAGDVLVTSFGELGE 83 (213)
Q Consensus 7 mS~~ek~~Ii~~fI~~APPGE~neV~~DLr~Ll~dd~~~~~~i~~a~~~YN~eq~~~V~l~---g~~~~vIIS~~nkl~~ 83 (213)
|| ++..+-|-+++..=||-.+..=++||-.|.++ +.+-+...+.+ |.++. ....+++.|.||. ++
T Consensus 1 Ms-dqQlD~ALDLmRrLpPqqieKnL~nLIdL~P~---L~edLLsSVdq-------plKia~dke~g~~yllcDynr-dg 68 (275)
T KOG3174|consen 1 MS-DQQLDCALDLMRRLPPQQIEKNLSNLIDLAPH---LCEDLLSSVDQ-------PLKIARDKESGKQYLLCDYNR-DG 68 (275)
T ss_pred Cc-hHHHHHHHHHHhcCCHHHHHHHHHHHHHhchH---HHHHHHhhccc-------ceeehhhhhcCCeeeeeecCC-Cc
Confidence 45 34457888999999999999999999988764 33333333221 22221 1125699999998 44
Q ss_pred Cce
Q 028126 84 NEY 86 (213)
Q Consensus 84 ~ry 86 (213)
..|
T Consensus 69 Dsy 71 (275)
T KOG3174|consen 69 DSY 71 (275)
T ss_pred ccc
Confidence 444
No 5
>PF01267 F-actin_cap_A: F-actin capping protein alpha subunit; InterPro: IPR002189 This entry represents a component of the WASH complex. The WASH complex is present at the surface of endosomes and recruits and activates the Arp2/3 complex to induce actin polymerisation. The WASH complex plays a key role in the fission of tubules that serve as transport intermediates during endosome sorting []. The WASH complex's subunit structure: F-actin-capping protein subunit alpha (CAPZA1, CAPZA2 or CAPZA3), F-actin-capping protein subunit beta (CAPZB), WASH (WASH1, WASH2P, WASH3P, WASH4P, WASH5P or WASH6P), FAM21 (FAM21A, FAM21B or FAM21C), KIAA1033, KIAA0196 (strumpellin) and CCDC53. The actin filament system, a prominent part of the cytoskeleton in eukaryotic cells, is both a static structure and a dynamic network that can undergo rearrangements: it is thought to be involved in processes such as cell movement and phagocytosis [], as well as muscle contraction. The F-actin capping protein binds in a calcium-independent manner to the fast growing ends of actin filaments (barbed end) thereby blocking the exchange of subunits at these ends. Unlike gelsolin and severin this protein does not sever actin filaments. The F-actin capping protein is a heterodimer composed of two unrelated subunits: alpha and beta (see IPR001698 from INTERPRO). Neither of the subunits shows sequence similarity to other filament-capping proteins []. The alpha subunit is a protein of about 268 to 286 amino acid residues whose sequence is well conserved in eukaryotic species [].; GO: 0003779 actin binding, 0030036 actin cytoskeleton organization, 0008290 F-actin capping protein complex; PDB: 1MQ1_D 1MWN_X 2KBM_Y 2KZ7_A 3AAE_C 3AA6_A 3LK4_G 1IZN_A 3AA7_A 3AAA_A ....
Probab=45.98 E-value=15 Score=33.13 Aligned_cols=112 Identities=17% Similarity=0.119 Sum_probs=67.8
Q ss_pred CccchHHHhhhHHHHhhhCce-----eeEcCCCCC--eeEEeeccccCCCceecCCCCeEEEEec-----------ccc-
Q 028126 42 NEVYDEAVSESFPIYNKSHMI-----CLQMPAGAG--DVLVTSFGELGENEYLDPRTAQVAIVDH-----------VKQ- 102 (213)
Q Consensus 42 d~~~~~~i~~a~~~YN~eq~~-----~V~l~g~~~--~vIIS~~nkl~~~ry~DP~sk~sF~~DH-----------l~~- 102 (213)
-..++.++..++++|-.++|. +...++++. -+|+-..++.....||-.+|+..|.||. +.-
T Consensus 107 ~e~~R~~l~~~l~~Yv~~hy~~g~~~V~~~~~~~~~~l~i~I~~~k~n~~NfwnG~WrS~w~~~~~~~~~l~G~I~V~vH 186 (271)
T PF01267_consen 107 LESYRDALDKALEKYVKEHYPSGACGVYPKSEEDKETLVICIVAHKYNPKNFWNGRWRSEWTVDFSSSGTLSGKIKVQVH 186 (271)
T ss_dssp SHHHHHHHHHHHHHHHHHHSTTEEEEEEEEEETTEEEEEEEEEEEEEEGGGTEEEEEEEEEEEEEETTEEEEEEEEEEEE
T ss_pred hHHHHHHHHHHHHHHHHHhccCceeEEEeccCCCccEEEEEEEecccccccccCceeeEEEEEecCCCceEEEEEEeeEE
Confidence 345678899999999999981 122222221 3444455567889999999999999992 433
Q ss_pred ------eeeEEEeeeeEEEeecccccccccccCCCccHHHHHHHHHHHHHHHHHH----HHHhcccc
Q 028126 103 ------VGAHYFEEGNVQLDAKHECGDSTLFQSPDDSAISISNILRHHETEYLAS----LEVLNFLL 159 (213)
Q Consensus 103 ------V~VHYYEDGNVqL~ssK~v~~s~~~~~~~~~A~~IVk~I~~~En~yQ~~----L~e~f~~L 159 (213)
||..+=++-+..+....+ ... ....++.|-++=.+.+.+.... =++.|.+|
T Consensus 187 YyEdGNVqL~~~k~~~~~~~~~~~-~~~-----a~~iv~~I~~~E~~~q~~L~e~~~~ls~~tFK~L 247 (271)
T PF01267_consen 187 YYEDGNVQLNSSKEVSETVSVSND-EQF-----ASDIVKAIKEAENKYQTSLNESYNNLSEKTFKAL 247 (271)
T ss_dssp E-TTEEEEEEEEEEEEEEEE--SH-HHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred EEeecEEEEEEccccceeeccCCh-hhh-----HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHh
Confidence 777777777776665543 111 1234555554444444444433 33355555
No 6
>PF07661 MORN_2: MORN repeat variant; InterPro: IPR011652 This entry represents an apparent variant of the IPR003409 from INTERPRO repeat.
Probab=44.30 E-value=21 Score=19.11 Aligned_cols=15 Identities=20% Similarity=0.507 Sum_probs=11.4
Q ss_pred eeeEEEeeeeEEEee
Q 028126 103 VGAHYFEEGNVQLDA 117 (213)
Q Consensus 103 V~VHYYEDGNVqL~s 117 (213)
....|||+|+++-..
T Consensus 4 ~~~~yy~nG~l~~~~ 18 (22)
T PF07661_consen 4 EWKFYYENGKLKSEG 18 (22)
T ss_pred eEEEEeCCCCEEEEE
Confidence 356899999987654
No 7
>PF08265 YL1_C: YL1 nuclear protein C-terminal domain; InterPro: IPR013272 This domain is found at the C terminus in proteins of the YL1 family []. These proteins have been shown to be DNA-binding and may be transcription factors []. This domain is also found in proteins that do not belong to the YL1 family.
Probab=36.04 E-value=16 Score=22.62 Aligned_cols=14 Identities=29% Similarity=0.401 Sum_probs=11.3
Q ss_pred CCceecCCCCeEEE
Q 028126 83 ENEYLDPRTAQVAI 96 (213)
Q Consensus 83 ~~ry~DP~sk~sF~ 96 (213)
..+|.||+++.-|.
T Consensus 9 pA~Y~DP~T~l~Y~ 22 (30)
T PF08265_consen 9 PARYRDPKTGLPYA 22 (30)
T ss_pred CccccCCCCCCccc
Confidence 57899999987663
No 8
>PF13708 Methyltransf_27: Methyltransferase domain
Probab=31.76 E-value=2e+02 Score=24.49 Aligned_cols=69 Identities=9% Similarity=0.155 Sum_probs=44.7
Q ss_pred CCCHHHHHHHHHHHhh-cCCCCcHHHHHHHHHHhhCC-CccchHHHhhhHHHHhhhCc--eeeEcCCCCCeeEEee
Q 028126 6 ELNPKQKKEIAKWFLL-NSPAGEIQYVAKDLRLVLND-NEVYDEAVSESFPIYNKSHM--ICLQMPAGAGDVLVTS 77 (213)
Q Consensus 6 ~mS~~ek~~Ii~~fI~-~APPGE~neV~~DLr~Ll~d-d~~~~~~i~~a~~~YN~eq~--~~V~l~g~~~~vIIS~ 77 (213)
-||.+.+.+.-+.|-. ..||=....|+.=+..|..+ +..+.+++.++|+.-..+.- .|.++. .++|+..
T Consensus 23 ~m~~~~r~~~~~~l~~~~~p~ft~~NI~~t~~~l~~~r~~~~~~~v~~vF~~Ls~~yKTN~~~~~g---kkiIi~~ 95 (194)
T PF13708_consen 23 FMSAQARDEWDKQLEEDDPPEFTEENIYSTFEQLHANRGEIFERGVIDVFRSLSWDYKTNSPCKFG---KKIIINN 95 (194)
T ss_pred HhCHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHCHHHHHHHHHHHHHHHhchhhccCCCeeec---cceeecC
Confidence 3777788888777774 45555666777778888766 55667888888866433222 444544 3566643
No 9
>PLN03113 DNA ligase 1; Provisional
Probab=30.34 E-value=82 Score=32.65 Aligned_cols=32 Identities=25% Similarity=0.334 Sum_probs=25.8
Q ss_pred CCCHHHHHHHHHHHhhcCCCCcHHHHHHHHHHhhC
Q 028126 6 ELNPKQKKEIAKWFLLNSPAGEIQYVAKDLRLVLN 40 (213)
Q Consensus 6 ~mS~~ek~~Ii~~fI~~APPGE~neV~~DLr~Ll~ 40 (213)
.-|.++|..++..++..+.|-|..-+ +|.|++
T Consensus 259 ~~sq~~K~~~i~~Ll~~~~~~E~k~l---iR~l~g 290 (744)
T PLN03113 259 KDSQEKKKNRIKALLVAATDCEPLYL---IRLLQT 290 (744)
T ss_pred ccCHHHHHHHHHHHHHhCCHHHHHHH---HHHHhc
Confidence 35667899999999999999998877 555554
No 10
>cd06239 Peptidase_M14-like_1_2 Peptidase M14-like domain of a functionally uncharacterized subgroup of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Two major subfamilies of the M14 family, defined based on sequence and structural homology, are the A/B and N/E subfamilies. Enzymes belonging to the A/B subfamily are normally synthesized as inactive precursors containing preceding signal peptide, followed by an N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The A/B enzymes can be further divided based on their substrate specificity; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. Th
Probab=26.64 E-value=21 Score=31.50 Aligned_cols=46 Identities=20% Similarity=0.231 Sum_probs=28.4
Q ss_pred cchhhhhhhhhhh-hccccccccccceeeeecceeccceeEE-eeccc
Q 028126 160 IFKCLIIYSLVLT-LNSHINRSLTPICQITHSRIFGGNFQLL-VPCSL 205 (213)
Q Consensus 160 tFKaLRr~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 205 (213)
.-|+++-+...-. |.+.++-.+.-.-+-...|.||++||.+ +|+-|
T Consensus 166 r~~a~~~i~~~~~~l~~~~~~~i~~y~d~~~~~~~gd~~~~~g~~til 213 (231)
T cd06239 166 RKSAMLLIAAMNAMLQSYIPGQIGRYDDGFNPNCVGDTFQYLGTPTVL 213 (231)
T ss_pred HHHHHHHHHHHHHHHHHhcCCceeeecCCCCCCcchhhHhhcCCceEE
Confidence 4455655555444 5555554444444445678899999998 77654
No 11
>PF12574 120_Rick_ant: 120 KDa Rickettsia surface antigen; InterPro: IPR020954 This domain family is found in bacteria, and is approximately 40 amino acids in length. This family is a Rickettsia surface antigen of 120 kDa which may be used as an antigen for immune response against the bacterial species [].
Probab=25.45 E-value=1.1e+02 Score=27.83 Aligned_cols=80 Identities=20% Similarity=0.231 Sum_probs=49.3
Q ss_pred HHHHHH-hhCCCccchHHHhhhHHHHhhhC-ceeeEcCCCCCeeEEeeccccCCCceecCCCCeEEEEecccc-------
Q 028126 32 AKDLRL-VLNDNEVYDEAVSESFPIYNKSH-MICLQMPAGAGDVLVTSFGELGENEYLDPRTAQVAIVDHVKQ------- 102 (213)
Q Consensus 32 ~~DLr~-Ll~dd~~~~~~i~~a~~~YN~eq-~~~V~l~g~~~~vIIS~~nkl~~~ry~DP~sk~sF~~DHl~~------- 102 (213)
..|+|. ++.+|.- +.+..+.++=.+.+ |+..+.+| ..|.+++|-.+.=-.=+|+ .+.+|++-.+-+
T Consensus 88 ~~~~r~~vvknd~G--~ei~~L~E~TikT~p~~~~k~nG--~~V~V~sYRsid~P~tle~-~~gtm~LSLVa~~~nG~k~ 162 (255)
T PF12574_consen 88 ASDTRSKVVKNDAG--DEICTLQEETIKTSPLTVAKQNG--TQVEVKSYRSIDFPITLEK-AKGTMHLSLVAKYSNGKKP 162 (255)
T ss_pred cccceeeeeecCCc--chhhhhhhhhhhcchhheeecCC--cEEEEeeeeEEecCccccc-CCCcEEEEEEEeccCCCCC
Confidence 345554 3455554 66776665555544 88899888 5699999977432223444 444555444322
Q ss_pred -------eeeEEEee--eeEEEe
Q 028126 103 -------VGAHYFEE--GNVQLD 116 (213)
Q Consensus 103 -------V~VHYYED--GNVqL~ 116 (213)
..+||=+| ||=+|+
T Consensus 163 s~d~AvyltaHY~~~png~gKLk 185 (255)
T PF12574_consen 163 SKDDAVYLTAHYEEDPNGKGKLK 185 (255)
T ss_pred CcccceeEEEEeccCCCCCccee
Confidence 79999999 554443
No 12
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=25.17 E-value=68 Score=26.49 Aligned_cols=35 Identities=14% Similarity=0.156 Sum_probs=31.1
Q ss_pred CCHHHHHHHHHHHhhcCCCCcHHHHHHHHHHhhCC
Q 028126 7 LNPKQKKEIAKWFLLNSPAGEIQYVAKDLRLVLND 41 (213)
Q Consensus 7 mS~~ek~~Ii~~fI~~APPGE~neV~~DLr~Ll~d 41 (213)
|+.+|..+..+.-|+.-|+.|.+|.++|-+....|
T Consensus 1 M~k~efL~~L~~~L~~lp~~e~~e~l~~Y~e~f~d 35 (181)
T PF08006_consen 1 MNKNEFLNELEKYLKKLPEEEREEILEYYEEYFDD 35 (181)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 66789999999999999999999999999888754
No 13
>cd00495 Ribosomal_L25_TL5_CTC Ribosomal_L25_TL5_CTC: Ribosomal L25/TL5/CTC N-terminal 5S rRNA binding domain. L25 is a single-domain protein, homologous to the N-terminal domain of TL5 and CTC, which each contain two domains. CTC is a known stress protein, and proteins of this family are believed to have two functions, acting as both ribosomal and stress proteins. In Escherichia coli, cells deleted for L25 were found to be viable; however, these cells grew slowly and had impaired protein synthesis capability. In Bacillus subtilis, CTC is induced under stress conditions and located in the ribosome; it has been proposed that CTC may be necessary for accurate translation under stress conditions. Ribosomal_L25_TL5_CTC is found only in bacteria and some plastids. Due to its limited taxonomic diversity and the viability of cells deleted for L25, this protein is not believed to be necessary for ribosomal assembly. Eukaryotes contain a protein called L25, which is not homologous to bacterial L
Probab=22.17 E-value=1.3e+02 Score=22.20 Aligned_cols=47 Identities=17% Similarity=0.279 Sum_probs=32.6
Q ss_pred HHHhhhHHHHhhhCceeeEcCCCCCeeEEeeccccCCCceecCCCCeEEEEecc
Q 028126 47 EAVSESFPIYNKSHMICLQMPAGAGDVLVTSFGELGENEYLDPRTAQVAIVDHV 100 (213)
Q Consensus 47 ~~i~~a~~~YN~eq~~~V~l~g~~~~vIIS~~nkl~~~ry~DP~sk~sF~~DHl 100 (213)
..+..++........+.++++|....++|-+.- +||.+....++|+.
T Consensus 44 ~~l~k~l~~~~~~~~~~L~i~g~~~~~~ikevQ-------~~pv~~~i~HvDF~ 90 (91)
T cd00495 44 KELEKLLRKEGRSTLIELNIDGKKENVLIKDVQ-------RHPVKDKILHVDFL 90 (91)
T ss_pred HHHHHHHhhcCCceEEEEEECCEEEEEEEehhh-------hccCCCCEEEEecc
Confidence 334445555555566778888876777776554 58999999999875
No 14
>PF14969 DUF4508: Domain of unknown function (DUF4508)
Probab=22.05 E-value=1.3e+02 Score=23.56 Aligned_cols=36 Identities=8% Similarity=0.147 Sum_probs=31.6
Q ss_pred CCHHHHHHHHHHHhhcCCCCcHHHHHHHHHHhhCCC
Q 028126 7 LNPKQKKEIAKWFLLNSPAGEIQYVAKDLRLVLNDN 42 (213)
Q Consensus 7 mS~~ek~~Ii~~fI~~APPGE~neV~~DLr~Ll~dd 42 (213)
-|+-++.+.+..|+.-|-||.++.+++.+..|.-.|
T Consensus 15 WS~~QRe~Fl~~Lv~ka~p~~v~~Ll~~l~~l~v~d 50 (98)
T PF14969_consen 15 WSELQREDFLQDLVEKAVPGKVNGLLDSLENLSVQD 50 (98)
T ss_pred cCHHHHHHHHHHHHHHhccchHHHHHHHHHhCcCCC
Confidence 477899999999999999999999999999986543
No 15
>COG0641 AslB Arylsulfatase regulator (Fe-S oxidoreductase) [General function prediction only]
Probab=20.75 E-value=2.3e+02 Score=26.85 Aligned_cols=61 Identities=7% Similarity=0.098 Sum_probs=49.7
Q ss_pred CCHHHHHHHHHHHhhcCCCCc-------------HHHHHHHHHH--------------hhCCCccchHHHhhhHHHHhhh
Q 028126 7 LNPKQKKEIAKWFLLNSPAGE-------------IQYVAKDLRL--------------VLNDNEVYDEAVSESFPIYNKS 59 (213)
Q Consensus 7 mS~~ek~~Ii~~fI~~APPGE-------------~neV~~DLr~--------------Ll~dd~~~~~~i~~a~~~YN~e 59 (213)
||++..++++..++...+... .-++++.+.. |.-|.-++.+.+++-|+++..
T Consensus 37 Ms~etle~~i~~~~~~~~~~~v~~~w~GGEPlL~~~~f~~~~~~l~~k~~~~~~i~~siqTNg~LL~~e~~e~l~~~~~- 115 (378)
T COG0641 37 MSDETLEEYVRQYIAASNGDKVTFTWQGGEPLLAGLDFYRKAVALQQKYANGKTISNALQTNGTLLNDEWAEFLAEHDF- 115 (378)
T ss_pred CCHHHHHHHHHHHHhhCCCCeeEEEEECCccccchHHHHHHHHHHHHHHhcCCeeEEEEEEcccccCHHHHHHHHhcCc-
Confidence 999999999999999988666 3567777766 556777888889988998888
Q ss_pred CceeeEcCCC
Q 028126 60 HMICLQMPAG 69 (213)
Q Consensus 60 q~~~V~l~g~ 69 (213)
.+-++++|-
T Consensus 116 -~IgISiDGp 124 (378)
T COG0641 116 -LIGISIDGP 124 (378)
T ss_pred -eEEEeccCc
Confidence 888888883
No 16
>PF08863 YolD: YolD-like protein; InterPro: IPR014962 These proteins are functionally uncharacterised. However it has been predicted that these proteins are functionally equivalent to the UmuD subunit of polymerase V from Gram-negative bacteria [].
Probab=20.68 E-value=71 Score=23.02 Aligned_cols=17 Identities=29% Similarity=0.421 Sum_probs=13.3
Q ss_pred eeeEEEeeeeEEEeecc
Q 028126 103 VGAHYFEEGNVQLDAKH 119 (213)
Q Consensus 103 V~VHYYEDGNVqL~ssK 119 (213)
|.+.||++|+.+=.+.+
T Consensus 45 v~ity~~~g~~~~~~G~ 61 (92)
T PF08863_consen 45 VTITYYEDGYYQSVTGT 61 (92)
T ss_pred EEEEEEECCeeEEEEEE
Confidence 89999999988765543
No 17
>PF14201 DUF4318: Domain of unknown function (DUF4318)
Probab=20.65 E-value=1.5e+02 Score=21.95 Aligned_cols=30 Identities=13% Similarity=0.159 Sum_probs=20.6
Q ss_pred hHHHhhhHHHHhhhCceeeEcCCCCCeeEE
Q 028126 46 DEAVSESFPIYNKSHMICLQMPAGAGDVLV 75 (213)
Q Consensus 46 ~~~i~~a~~~YN~eq~~~V~l~g~~~~vII 75 (213)
.+.+-.|++.|..++...++--+...++++
T Consensus 17 ~e~i~~aIE~YC~~~~~~l~Fisr~~Pi~~ 46 (74)
T PF14201_consen 17 KEEICEAIEKYCIKNGESLEFISRDKPITF 46 (74)
T ss_pred HHHHHHHHHHHHHHcCCceEEEecCCcEEE
Confidence 477889999999998766554443344444
Done!