Query 028126
Match_columns 213
No_of_seqs 118 out of 229
Neff 4.9
Searched_HMMs 29240
Date Mon Mar 25 10:33:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028126.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028126hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4akr_A F-actin-capping protein 100.0 1.5E-55 5E-60 392.5 10.3 159 10-170 5-260 (281)
2 3aa0_A F-actin-capping protein 100.0 1.5E-49 5E-54 354.1 11.9 170 1-170 1-264 (286)
3 3aa0_B F-actin-capping protein 82.0 4.2 0.00014 35.4 7.5 70 7-86 1-71 (244)
4 4akr_B F-actin-capping protein 71.8 11 0.00037 33.5 7.3 66 7-81 19-85 (290)
5 3lk4_B F-actin-capping protein 65.9 14 0.00048 32.6 6.7 63 11-81 4-67 (277)
6 4akr_A F-actin-capping protein 56.8 5.3 0.00018 35.1 2.4 110 44-159 113-254 (281)
7 2qkl_B SPAC19A8.12 protein, SP 34.9 14 0.00047 27.6 1.3 31 1-31 1-31 (95)
8 4h4n_A Hypothetical protein BA 30.8 12 0.00042 25.9 0.3 19 170-188 30-48 (67)
9 3rco_A Tudor domain-containing 30.2 80 0.0027 23.1 4.8 53 6-58 7-61 (89)
10 2ajw_A Alpha-conotoxin MII; al 22.4 8.7 0.0003 22.0 -1.4 15 182-196 5-19 (26)
11 3gva_A Alkyltransferase-like p 21.0 45 0.0015 25.5 1.9 60 7-74 1-60 (116)
12 2qya_A Uncharacterized conserv 20.6 78 0.0027 24.7 3.3 38 108-150 31-68 (124)
No 1
>4akr_A F-actin-capping protein subunit alpha; actin-binding protein; 2.20A {Dictyostelium discoideum}
Probab=100.00 E-value=1.5e-55 Score=392.52 Aligned_cols=159 Identities=32% Similarity=0.498 Sum_probs=154.1
Q ss_pred HHHHHHHHHHhhcCCCCcHHHHHHHHHHhhCCCccchHHHhhhHHHHhhhCceeeEcCCCCCeeEEeeccccCCCceecC
Q 028126 10 KQKKEIAKWFLLNSPAGEIQYVAKDLRLVLNDNEVYDEAVSESFPIYNKSHMICLQMPAGAGDVLVTSFGELGENEYLDP 89 (213)
Q Consensus 10 ~ek~~Ii~~fI~~APPGE~neV~~DLr~Ll~dd~~~~~~i~~a~~~YN~eq~~~V~l~g~~~~vIIS~~nkl~~~ry~DP 89 (213)
+||++||++||++||||||++|++|||.|++||.++++++++||++||++||+||++||.+ ||||+||+++++|||||
T Consensus 5 ~ek~~i~~~fl~~aPPGE~~eV~~Dlr~l~~~d~~~~~~~~~a~~~Yn~~q~~~v~~~g~~--viis~~n~l~~~ry~Dp 82 (281)
T 4akr_A 5 QELVQIATNFLLNAPPCEFMEVVSDVRALLPSESLLNASAGSTFREYNTSQMVSVQTSKGS--ALITKEGEISNNEYLDP 82 (281)
T ss_dssp HHHHHHHHHHHHTCCTTCHHHHHHHHHTTCSCTTTTTTTHHHHHHHHHHHHTCEEEETTEE--EECCSTTEEETTEEEEG
T ss_pred HHHHHHHHHHHHcCCCchHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHccEEEEeCCCc--EEEeeccccCCCeEEcc
Confidence 7899999999999999999999999999999999999999999999999999999999954 99999999999999999
Q ss_pred CCCeEEEEecccc-------------------------------------------------------------------
Q 028126 90 RTAQVAIVDHVKQ------------------------------------------------------------------- 102 (213)
Q Consensus 90 ~sk~sF~~DHl~~------------------------------------------------------------------- 102 (213)
+++++|+|||+++
T Consensus 83 ~~k~sF~~DHl~~~a~d~~~~~~~~~~~~e~~R~al~~~l~~Yv~~hYp~g~~~Vy~~~~~~~~~l~i~I~~~k~np~NF 162 (281)
T 4akr_A 83 KNKQVITYDHIKQEVTGERSASGEIEQDIEQYRAAFDEEATKYCNEYYPNGVSAVYGTKVSEGIKITVCISTCIYKPNAF 162 (281)
T ss_dssp GGTEEEEEETTTTEEEEEEECSSCSCGGGHHHHHHHHHHHHHHHHHHCTTCEEEEEEEEETTEEEEEEEEEEEEEEGGGT
T ss_pred CCCeEEEEeccCCEEcCcccccccCccchHHHHHHHHHHHHHHHHhhCCCCcEEEecccCCCCcEEEEEEEeCccCcccc
Confidence 9999999999987
Q ss_pred ---------------------------eeeEEEeeeeEEEeecccccccccccCCCccHHHHHHHHHHHHHHHHHHHHHh
Q 028126 103 ---------------------------VGAHYFEEGNVQLDAKHECGDSTLFQSPDDSAISISNILRHHETEYLASLEVL 155 (213)
Q Consensus 103 ---------------------------V~VHYYEDGNVqL~ssK~v~~s~~~~~~~~~A~~IVk~I~~~En~yQ~~L~e~ 155 (213)
|+|||||||||||+++|+++.+++++++.++|++|++.|+++|++||++|+++
T Consensus 163 wnGrWrS~w~~~~~~~~~~l~~~G~I~V~vHYyEDGNVqL~s~k~~~~s~~~~~~~~~a~~iv~~I~~~E~~~q~~l~~~ 242 (281)
T 4akr_A 163 YSGRWRSVWTCTFKPGSGNVTSNGKVQVNVHYFEDGNVQLNTVTQKQTTSPSADAQSTAVNAFKAIGKAELNLHTALDNN 242 (281)
T ss_dssp EEEEEEEEEEEEECTTSSEEEEEEEEEEEEEECSSEEEEEEEEEEEEEEEECCSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCceEEEEEEEecCCCCeEEECCEEEEEEEEeecceEEEEeccccccccccCCchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999998888899999999999999999999999
Q ss_pred cccc---cchhhhhhhhh
Q 028126 156 NFLL---IFKCLIIYSLV 170 (213)
Q Consensus 156 f~~L---tFKaLRr~~~~ 170 (213)
|++| +||+|||+.-|
T Consensus 243 ~~~ls~~tfK~LRR~LPv 260 (281)
T 4akr_A 243 YSTMGDTTFKALRRALPI 260 (281)
T ss_dssp HHHHHHTTTTTTSCSSCT
T ss_pred HHHhCHHHHHHhhccCCC
Confidence 9999 99999999754
No 2
>3aa0_A F-actin-capping protein subunit alpha-1; actin capping protein, barbed END regulation, carmil family conformational change; 1.70A {Gallus gallus} PDB: 2kz7_A 1izn_A 3aa1_A* 3aa6_A 3aa7_A* 3aaa_A 3aae_A 3lk2_A 3lk3_A 3lk4_A 2kxp_A
Probab=100.00 E-value=1.5e-49 Score=354.12 Aligned_cols=170 Identities=31% Similarity=0.504 Sum_probs=158.9
Q ss_pred CCc-cCCCCHHHHHHHHHHHhhcCCCCcHHHHHHHHHHhhCCCccchHHHhhhHHHHhhhCceeeEcCCCCCeeEEeecc
Q 028126 1 MAE-EVELNPKQKKEIAKWFLLNSPAGEIQYVAKDLRLVLNDNEVYDEAVSESFPIYNKSHMICLQMPAGAGDVLVTSFG 79 (213)
Q Consensus 1 M~~-~~~mS~~ek~~Ii~~fI~~APPGE~neV~~DLr~Ll~dd~~~~~~i~~a~~~YN~eq~~~V~l~g~~~~vIIS~~n 79 (213)
||| +++||+++|.+||.+||.+|||||+++|++||+.|++|+.++++.+++|+++||++||+|+++||.++++|||+||
T Consensus 1 m~~~~~~ms~~~k~~ia~~ll~~aPPge~~~v~~Dl~~L~~dd~ll~~~l~~a~~~yn~dq~~pl~v~~~~~~~li~~yn 80 (286)
T 3aa0_A 1 MADFEDRVSDEEKVRIAAKFITHAPPGEFNEVFNDVRLLLNNDNLLREGAAHAFAQYNMDQFTPVKIEGYDDQVLITEHG 80 (286)
T ss_dssp ------CCCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHCCHHHHHHHTHHHHHHHHHHTTCEECCTTSSSCEECCGGG
T ss_pred CCccccccChHHHHHHHHHHHHhCCcHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcceeEEecCCCCcEEEEecc
Confidence 888 6789999999999999999999999999999999999999999999999999999999999999988899999999
Q ss_pred ccCCCceecCCCCeEEEEecccc---------------------------------------------------------
Q 028126 80 ELGENEYLDPRTAQVAIVDHVKQ--------------------------------------------------------- 102 (213)
Q Consensus 80 kl~~~ry~DP~sk~sF~~DHl~~--------------------------------------------------------- 102 (213)
+++++||+||+++++|+|||+++
T Consensus 81 ~~~~~~Y~dp~s~~~f~~Dh~~~~~~d~~~~~ps~~l~~~r~~~~~~l~~Y~~~~Y~~g~~sVY~~d~e~~~~~a~~I~~ 160 (286)
T 3aa0_A 81 DLGNGRFLDPRNKISFKFDHLRKEASDPQPEDTESALKQWRDACDSALRAYVKDHYPNGFCTVYGKSIDGQQTIIACIES 160 (286)
T ss_dssp EEETTEEEETTTTEEEEEETTTTEEEEEEECCCCCTTHHHHHHHHHHHHHHHHHHSSSCEEEEEEEEETTEEEEEEEEEE
T ss_pred ccCCCceeCcccCceEEeecccceeccCCCCCCchhhHHHHHHHHHHHHHHHHHHcCCCceEEEecccCCCceEEEEEEE
Confidence 99999999999999999999976
Q ss_pred ---------------------------------eeeEEEeeeeEEEeecccccccccccCCCccHHHHHHHHHHHHHHHH
Q 028126 103 ---------------------------------VGAHYFEEGNVQLDAKHECGDSTLFQSPDDSAISISNILRHHETEYL 149 (213)
Q Consensus 103 ---------------------------------V~VHYYEDGNVqL~ssK~v~~s~~~~~~~~~A~~IVk~I~~~En~yQ 149 (213)
|++||||||||||+++|+++.+++++++.+.|++|++.|+++|++||
T Consensus 161 ~k~~~~nfw~G~W~Si~~~~v~~~~~~l~G~i~v~vHY~EdGNV~L~~~k~~~~~~~~~~~~~~a~~i~~~Ie~~E~~~~ 240 (286)
T 3aa0_A 161 HQFQPKNFWNGRWRSEWKFTITPPTAQVAAVLKIQVHYYEDGNVQLVSHKDIQDSVQVSSDVQTAKEFIKIIENAENEYQ 240 (286)
T ss_dssp EEEEGGGTEEEEEEEEEEEEEETTEEEEEEEEEEEEEECTTEEEEEEEEEEEEEEEECCSHHHHHHHHHHHHHHHHHHHH
T ss_pred eccCCccccCceeeeEEEEEeccccceEEEEEEEEEEEecCceEEEeeccccccccccCChHHHHHHHHHHHHHHHHHHH
Confidence 68999999999999999999999888777899999999999999999
Q ss_pred HHHHHhcccc---cchhhhhhhhh
Q 028126 150 ASLEVLNFLL---IFKCLIIYSLV 170 (213)
Q Consensus 150 ~~L~e~f~~L---tFKaLRr~~~~ 170 (213)
.+|++.|.+| +||+|||+.-|
T Consensus 241 ~~L~e~y~~ls~~~fk~LRR~LPv 264 (286)
T 3aa0_A 241 TAISENYQTMSDTTFKALRRQLPV 264 (286)
T ss_dssp HHHHHHHHHHHHTHHHHHCCSSCT
T ss_pred HHHHHHHHHhhHHHHHHHhccCCc
Confidence 9999999999 99999998754
No 3
>3aa0_B F-actin-capping protein subunit beta isoforms 1 A; actin capping protein, barbed END regulation, carmil family conformational change; 1.70A {Gallus gallus} PDB: 3aa1_B* 3aa6_B 3aa7_B* 2kxp_B 3lk2_B
Probab=82.05 E-value=4.2 Score=35.38 Aligned_cols=70 Identities=14% Similarity=0.183 Sum_probs=48.7
Q ss_pred CCHHHHHHHHHHHhhcCCCCcHHHHHHHHHHhhCCCccchHHHhhhHHHHhhhCceeeEc-CCCCCeeEEeeccccCCCc
Q 028126 7 LNPKQKKEIAKWFLLNSPAGEIQYVAKDLRLVLNDNEVYDEAVSESFPIYNKSHMICLQM-PAGAGDVLVTSFGELGENE 85 (213)
Q Consensus 7 mS~~ek~~Ii~~fI~~APPGE~neV~~DLr~Ll~dd~~~~~~i~~a~~~YN~eq~~~V~l-~g~~~~vIIS~~nkl~~~r 85 (213)
|+ +++.+.+-+++..=||-++.+-+++|..|.++ +.+.+.. ..+|-..|.- +.....+|.|.||+ ++..
T Consensus 1 m~-~~~~d~aLdL~RRLpP~~ie~nl~~l~~L~Pd---l~edLLs-----sVDqPLki~~d~~~~k~yL~CdYNR-DgDS 70 (244)
T 3aa0_B 1 MS-DQQLDCALDLMRRLPPQQIEKNLSDLIDLVPS---LCEDLLS-----SVDQPLKIARDKVVGKDYLLCDYNR-DGDS 70 (244)
T ss_dssp -C-HHHHHHHHHHHTTSCGGGHHHHHHHHHHHCGG---GHHHHHH-----HSCCCCEEEEETTTTEEEEECGGGE-ETTE
T ss_pred CC-chHHHHHHHHHhcCCHHHHHHHHHHHHHhChH---HHHHHHh-----ccCCcceEeeccccCCeeeeecccC-CCcc
Confidence 45 67788999999999999999999999999875 2222222 2344444433 33346799999999 4433
Q ss_pred e
Q 028126 86 Y 86 (213)
Q Consensus 86 y 86 (213)
|
T Consensus 71 Y 71 (244)
T 3aa0_B 71 Y 71 (244)
T ss_dssp E
T ss_pred c
Confidence 3
No 4
>4akr_B F-actin-capping protein subunit beta; actin-binding protein; 2.20A {Dictyostelium discoideum}
Probab=71.84 E-value=11 Score=33.55 Aligned_cols=66 Identities=12% Similarity=0.105 Sum_probs=47.5
Q ss_pred CCHHHHHHHHHHHhhcCCCCcHHHHHHHHHHhhCCCccchHHHhhhHHHHhhhCceeeEc-CCCCCeeEEeecccc
Q 028126 7 LNPKQKKEIAKWFLLNSPAGEIQYVAKDLRLVLNDNEVYDEAVSESFPIYNKSHMICLQM-PAGAGDVLVTSFGEL 81 (213)
Q Consensus 7 mS~~ek~~Ii~~fI~~APPGE~neV~~DLr~Ll~dd~~~~~~i~~a~~~YN~eq~~~V~l-~g~~~~vIIS~~nkl 81 (213)
|+ +++.+.+-+|+..=||-.+.+-+++|..|.++ +.+.+... ++|-..|.- +.....+|.|.||+-
T Consensus 19 ~~-~~~~daaLdLlRRLpP~~ie~nL~~Li~L~Pd---l~edLLss-----VDqPLki~~d~~~~k~yL~CDYNRD 85 (290)
T 4akr_B 19 GT-EKQLSCCLDLMRRLPPSQIEDNLAGLLDLVPD---LTEDLLSS-----IDQPLKVAYDAVSKKDYLLCDYNRD 85 (290)
T ss_dssp -C-HHHHHHHHHHHHHSCGGGHHHHHHHHHHHCGG---GHHHHHHH-----CCCCCEEEEETTTTEEEEECGGGEE
T ss_pred cc-hhHHHHHHHHHhhCCHHHHHHHHHHHHhhChH---hHHHHHHh-----CCCcceEeEccccCCeEEeecccCC
Confidence 55 57789999999999999999999999999875 22333332 344444433 333467999999993
No 5
>3lk4_B F-actin-capping protein subunit beta isoforms 1 and 2; CAPZ, CD2AP, actin filaments, uncapping, actin-filament regulators, protein-protein comple, actin capping, actin- binding; 1.99A {Gallus gallus} PDB: 2kz7_B 3aaa_B 3aae_B 3lk3_B 1izn_B
Probab=65.93 E-value=14 Score=32.61 Aligned_cols=63 Identities=16% Similarity=0.116 Sum_probs=45.6
Q ss_pred HHHHHHHHHhhcCCCCcHHHHHHHHHHhhCCCccchHHHhhhHHHHhhhCceeeEcC-CCCCeeEEeecccc
Q 028126 11 QKKEIAKWFLLNSPAGEIQYVAKDLRLVLNDNEVYDEAVSESFPIYNKSHMICLQMP-AGAGDVLVTSFGEL 81 (213)
Q Consensus 11 ek~~Ii~~fI~~APPGE~neV~~DLr~Ll~dd~~~~~~i~~a~~~YN~eq~~~V~l~-g~~~~vIIS~~nkl 81 (213)
++.+.+=+|+..=||-.+.+=+++|..|.++ +.+.+..+ ++|-.-|.-+ .....+|.|.||+-
T Consensus 4 ~~~daaLdLlRRLpP~~ie~nl~~l~~L~P~---L~edLLss-----VDqPLki~~d~~~~k~yL~CDYNRD 67 (277)
T 3lk4_B 4 QQLDCALDLMRRLPPQQIEKNLSDLIDLVPS---LCEDLLSS-----VDQPLKIARDKVVGKDYLLCDYNRD 67 (277)
T ss_dssp CHHHHHHHHHTTSCGGGHHHHHHHHHHHCGG---GHHHHHHH-----SCCCCEEEEETTTTEEEEECGGGEE
T ss_pred hHHHHHHHHHhhCCHHHHHHHHHHHHhhChH---hHHHHHHh-----CCcCceEeEccccCCeeEeecccCC
Confidence 4578899999999999999999999999865 33333332 3454444433 23357999999993
No 6
>4akr_A F-actin-capping protein subunit alpha; actin-binding protein; 2.20A {Dictyostelium discoideum}
Probab=56.76 E-value=5.3 Score=35.13 Aligned_cols=110 Identities=13% Similarity=0.052 Sum_probs=65.7
Q ss_pred cchHHHhhhHHHHhhhCce-------eeEcCCCCCeeEEeeccccCCCceecCCCCeEEEEe--------------cccc
Q 028126 44 VYDEAVSESFPIYNKSHMI-------CLQMPAGAGDVLVTSFGELGENEYLDPRTAQVAIVD--------------HVKQ 102 (213)
Q Consensus 44 ~~~~~i~~a~~~YN~eq~~-------~V~l~g~~~~vIIS~~nkl~~~ry~DP~sk~sF~~D--------------Hl~~ 102 (213)
.++.++..++.+|-.++|. +...+|.+.-+|+-..++.....||..+|+..|.|| ++.-
T Consensus 113 ~~R~al~~~l~~Yv~~hYp~g~~~Vy~~~~~~~~~l~i~I~~~k~np~NFwnGrWrS~w~~~~~~~~~~l~~~G~I~V~v 192 (281)
T 4akr_A 113 QYRAAFDEEATKYCNEYYPNGVSAVYGTKVSEGIKITVCISTCIYKPNAFYSGRWRSVWTCTFKPGSGNVTSNGKVQVNV 192 (281)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCEEEEEEEEETTEEEEEEEEEEEEEEGGGTEEEEEEEEEEEEECTTSSEEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHhhCCCCcEEEecccCCCCcEEEEEEEeCccCcccccCCceEEEEEEEecCCCCeEEECCEEEEEE
Confidence 3668899999999999982 222333222344444556788999999999999999 3443
Q ss_pred -------eeeEEEeeeeEEEeecccccccccccCCCccHHHHHHH----HHHHHHHHHHHHHHhcccc
Q 028126 103 -------VGAHYFEEGNVQLDAKHECGDSTLFQSPDDSAISISNI----LRHHETEYLASLEVLNFLL 159 (213)
Q Consensus 103 -------V~VHYYEDGNVqL~ssK~v~~s~~~~~~~~~A~~IVk~----I~~~En~yQ~~L~e~f~~L 159 (213)
||..+=.+-+-.+..+.+.... ....+.|-++ -.+++..|+.-=++.|..|
T Consensus 193 HYyEDGNVqL~s~k~~~~s~~~~~~~~~a------~~iv~~I~~~E~~~q~~l~~~~~~ls~~tfK~L 254 (281)
T 4akr_A 193 HYFEDGNVQLNTVTQKQTTSPSADAQSTA------VNAFKAIGKAELNLHTALDNNYSTMGDTTFKAL 254 (281)
T ss_dssp EECSSEEEEEEEEEEEEEEEECCSHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTT
T ss_pred EEeecceEEEEeccccccccccCCchhhH------HHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHh
Confidence 6666666655444443321111 1234444433 3344555555555577777
No 7
>2qkl_B SPAC19A8.12 protein, SPBC3B9.21 protein; protein-protein complex, hydrolase; 2.33A {Schizosaccharomyces pombe} SCOP: a.242.1.1
Probab=34.92 E-value=14 Score=27.55 Aligned_cols=31 Identities=26% Similarity=0.284 Sum_probs=23.0
Q ss_pred CCccCCCCHHHHHHHHHHHhhcCCCCcHHHH
Q 028126 1 MAEEVELNPKQKKEIAKWFLLNSPAGEIQYV 31 (213)
Q Consensus 1 M~~~~~mS~~ek~~Ii~~fI~~APPGE~neV 31 (213)
|+..++..++-..+++++||.+.|+-|++++
T Consensus 1 ~~~~~~~~~~iLdDL~~RFIiN~P~eel~s~ 31 (95)
T 2qkl_B 1 MSFTNATFSQVLDDLSARFILNLPAEEQSSV 31 (95)
T ss_dssp -CCTTCCHHHHHHHHHHHHTTTCCGGGSSCH
T ss_pred CCCCcCCHHHHHHHHHHHHHHcCCHHHhhhH
Confidence 5642233356778999999999999998876
No 8
>4h4n_A Hypothetical protein BA_2335; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.10A {Bacillus anthracis}
Probab=30.78 E-value=12 Score=25.93 Aligned_cols=19 Identities=47% Similarity=0.520 Sum_probs=15.7
Q ss_pred hhhhccccccccccceeee
Q 028126 170 VLTLNSHINRSLTPICQIT 188 (213)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~ 188 (213)
|+|--|-||+-+||-||.-
T Consensus 30 vitnvsiinql~t~kcqti 48 (67)
T 4h4n_A 30 VITNVSIINQLSTPKCQTI 48 (67)
T ss_dssp EEEEEEEEECSSSCEEEEE
T ss_pred hhhhHHHHHhhccccceee
Confidence 5566688999999999963
No 9
>3rco_A Tudor domain-containing protein 7; structural genomics, structural genomics consortium, SGC, HL DNA binding protein; 1.80A {Homo sapiens} PDB: 2lh9_A
Probab=30.17 E-value=80 Score=23.14 Aligned_cols=53 Identities=9% Similarity=0.125 Sum_probs=38.6
Q ss_pred CCCH-HHHHHHHHHHhhcCCCC-cHHHHHHHHHHhhCCCccchHHHhhhHHHHhh
Q 028126 6 ELNP-KQKKEIAKWFLLNSPAG-EIQYVAKDLRLVLNDNEVYDEAVSESFPIYNK 58 (213)
Q Consensus 6 ~mS~-~ek~~Ii~~fI~~APPG-E~neV~~DLr~Ll~dd~~~~~~i~~a~~~YN~ 58 (213)
.|.+ ++-.++++++|.++|+| .+.++.+|=|.+.|..--+++--=..++++-.
T Consensus 7 ~m~~~e~V~k~iRslL~S~k~gvtl~~L~~DYr~l~G~~iP~r~lGy~sl~~fL~ 61 (89)
T 3rco_A 7 GMLEGDLVSKMLRAVLQSHKNGVALPRLQGEYRSLTGDWIPFKQLGFPTLEAYLR 61 (89)
T ss_dssp -CCHHHHHHHHHHHHHHTCTTCEEHHHHHHHHHHHHSSCCCTTTTTCSSHHHHHH
T ss_pred eeccHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhCCcCChhhhCcccHHHHHh
Confidence 4665 67778999999999988 57888899999998766555444444455544
No 10
>2ajw_A Alpha-conotoxin MII; alpha-helix, cyclic backbone; NMR {Synthetic}
Probab=22.37 E-value=8.7 Score=22.04 Aligned_cols=15 Identities=40% Similarity=1.110 Sum_probs=13.3
Q ss_pred ccceeeeecceeccc
Q 028126 182 TPICQITHSRIFGGN 196 (213)
Q Consensus 182 ~~~~~~~~~~~~~~~ 196 (213)
.|.|...||.+-||.
T Consensus 5 npvchlehsnlcgga 19 (26)
T 2ajw_A 5 NPVCHLEHSNLCGGA 19 (26)
T ss_dssp SHHHHHHTTTGGGTS
T ss_pred Ccceeeeeccccccc
Confidence 589999999999885
No 11
>3gva_A Alkyltransferase-like protein 1; alkylated DNA damage repair, DNA damage, DNA repair, DNA- binding, DNA binding protein; 2.00A {Schizosaccharomyces pombe} PDB: 3gx4_X* 3gyh_X* 4enj_A* 4enk_A* 4enm_A* 4enn_A* 4hdu_A* 4hdv_A*
Probab=20.96 E-value=45 Score=25.50 Aligned_cols=60 Identities=8% Similarity=-0.028 Sum_probs=41.4
Q ss_pred CCHHHHHHHHHHHhhcCCCCcHHHHHHHHHHhhCCCccchHHHhhhHHHHhhhCceeeEcCCCCCeeE
Q 028126 7 LNPKQKKEIAKWFLLNSPAGEIQYVAKDLRLVLNDNEVYDEAVSESFPIYNKSHMICLQMPAGAGDVL 74 (213)
Q Consensus 7 mS~~ek~~Ii~~fI~~APPGE~neV~~DLr~Ll~dd~~~~~~i~~a~~~YN~eq~~~V~l~g~~~~vI 74 (213)
|+..++.+-|-..|.+-|+|+.-. +.||-.+++.. ....|+-.-+..+-.++.+|= +.||
T Consensus 1 m~~t~Fq~~Vw~~l~~IP~G~v~T-Yg~IA~~~G~p-----~aaRaVG~Al~~Np~~i~IPC--HRVV 60 (116)
T 3gva_A 1 MRMDEFYTKVYDAVCEIPYGKVST-YGEIARYVGMP-----SYARQVGQAMKHLHPETHVPW--HRVI 60 (116)
T ss_dssp -CHHHHHHHHHHHHTTSCTTCBBC-HHHHHHHTTCT-----TCHHHHHHHHHTSCTTCSSCG--GGBC
T ss_pred CCccHHHHHHHHHHhcCCCCCeEe-HHHHHHHhCCC-----CcHHHHHHHHHhCCCCcCCCc--eEEE
Confidence 566788888999999999999865 57777777753 224455555556666677774 4444
No 12
>2qya_A Uncharacterized conserved protein; structural genomics, unknown function, PSI-2, protein structure initiative; 2.17A {Methanopyrus kandleri AV19}
Probab=20.58 E-value=78 Score=24.73 Aligned_cols=38 Identities=11% Similarity=0.032 Sum_probs=28.9
Q ss_pred EeeeeEEEeecccccccccccCCCccHHHHHHHHHHHHHHHHH
Q 028126 108 FEEGNVQLDAKHECGDSTLFQSPDDSAISISNILRHHETEYLA 150 (213)
Q Consensus 108 YEDGNVqL~ssK~v~~s~~~~~~~~~A~~IVk~I~~~En~yQ~ 150 (213)
|++|++.|.-+++|=.. +......+++.+++++.+|+.
T Consensus 31 f~eg~~~l~Vse~FYgg-----e~v~~e~~~~~L~~A~~~~~~ 68 (124)
T 2qya_A 31 LKYKGRTLHISEPFYSG-----KSMEPDRAAKKIREAVQEYED 68 (124)
T ss_dssp EEETTEEEECCTTTSCC-----EEECHHHHHHHHHHHHHHHTT
T ss_pred EecCCEEEEECcCccCC-----CCCCHHHHHHHHHHhhhcccc
Confidence 48999999988886433 234678899999999777653
Done!