Query 028127
Match_columns 213
No_of_seqs 164 out of 476
Neff 4.5
Searched_HMMs 29240
Date Mon Mar 25 10:35:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028127.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028127hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1tr8_A Conserved protein (MTH1 100.0 2.2E-36 7.4E-41 234.7 9.9 97 74-212 2-102 (102)
2 3mce_A Nascent polypeptide-ass 99.9 6E-23 2.1E-27 146.4 4.6 57 73-129 5-61 (61)
3 3mcb_A Nascent polypeptide-ass 99.9 3.2E-22 1.1E-26 139.5 5.8 54 75-128 1-54 (54)
4 3mcb_B Transcription factor BT 99.2 2.2E-11 7.4E-16 85.9 7.0 48 82-129 2-49 (58)
5 3lkx_A Transcription factor BT 99.2 4.2E-11 1.4E-15 86.4 7.4 48 82-129 2-49 (66)
6 1wj7_A Hypothetical protein (R 98.5 5.9E-08 2E-12 75.5 3.8 36 176-211 40-75 (104)
7 2cp9_A EF-TS, EF-TSMT, elongat 98.2 1.7E-06 5.8E-11 61.9 4.5 41 172-212 6-46 (64)
8 1z96_A DNA-damage, UBA-domain 97.0 0.00061 2.1E-08 42.7 3.8 35 176-211 5-39 (40)
9 2g3q_A Protein YBL047C; endocy 94.9 0.015 5.1E-07 37.2 2.4 33 176-209 5-37 (43)
10 2ooa_A E3 ubiquitin-protein li 94.4 0.045 1.5E-06 37.6 4.1 29 177-206 13-41 (52)
11 2d9s_A CBL E3 ubiquitin protei 94.4 0.049 1.7E-06 37.6 4.2 29 178-207 12-40 (53)
12 1wji_A Tudor domain containing 94.4 0.045 1.5E-06 38.3 4.1 35 174-209 8-42 (63)
13 2dak_A Ubiquitin carboxyl-term 93.6 0.065 2.2E-06 37.1 3.7 34 174-208 8-41 (63)
14 1wgn_A UBAP1, ubiquitin associ 93.5 0.05 1.7E-06 38.7 2.9 32 176-208 20-51 (63)
15 1wiv_A UBP14, ubiquitin-specif 93.2 0.092 3.1E-06 37.7 4.1 37 173-210 27-63 (73)
16 1vg5_A RSGI RUH-014, rhomboid 93.0 0.099 3.4E-06 37.8 3.9 36 174-210 28-63 (73)
17 1whc_A RSGI RUH-027, UBA/UBX 3 92.9 0.14 4.7E-06 35.7 4.5 35 173-208 7-42 (64)
18 1veg_A NEDD8 ultimate buster-1 92.8 0.11 3.9E-06 38.5 4.1 35 173-208 27-61 (83)
19 2cpw_A CBL-interacting protein 92.7 0.15 5E-06 35.7 4.5 34 174-208 18-52 (64)
20 2dai_A Ubadc1, ubiquitin assoc 92.1 0.17 5.7E-06 37.3 4.3 35 173-208 27-61 (83)
21 1ify_A HHR23A, UV excision rep 91.8 0.12 4.2E-06 34.1 2.9 32 177-209 10-41 (49)
22 2jy5_A Ubiquilin-1; UBA, alter 91.7 0.18 6.2E-06 33.7 3.8 35 176-211 13-48 (52)
23 2ekk_A UBA domain from E3 ubiq 91.7 0.17 5.9E-06 32.8 3.6 34 173-208 7-40 (47)
24 2knz_A Ubiquilin-4; cytoplasm, 91.5 0.18 6.2E-06 33.8 3.6 33 178-211 14-47 (53)
25 2dag_A Ubiquitin carboxyl-term 90.8 0.23 7.9E-06 35.6 3.8 35 173-208 7-42 (74)
26 2crn_A Ubash3A protein; compac 90.7 0.39 1.3E-05 33.5 4.8 35 173-208 7-42 (64)
27 2bwb_A Ubiquitin-like protein 90.7 0.28 9.5E-06 32.2 3.8 33 178-211 10-43 (46)
28 2dah_A Ubiquilin-3; UBA domain 90.1 0.21 7.2E-06 33.9 2.9 34 177-211 11-45 (54)
29 1v92_A NSFL1 cofactor P47; 3-h 89.9 0.33 1.1E-05 30.8 3.7 33 178-210 8-40 (46)
30 2oo9_A E3 ubiquitin-protein li 89.4 0.41 1.4E-05 32.1 3.8 30 177-207 6-35 (46)
31 1wr1_B Ubiquitin-like protein 88.9 0.41 1.4E-05 33.0 3.7 33 178-211 20-53 (58)
32 2juj_A E3 ubiquitin-protein li 88.1 0.41 1.4E-05 33.3 3.2 30 176-206 8-37 (56)
33 2lbc_A Ubiquitin carboxyl-term 88.1 0.45 1.5E-05 36.7 3.9 37 174-211 77-113 (126)
34 2dkl_A Trinucleotide repeat co 87.2 0.67 2.3E-05 34.2 4.2 33 175-208 21-53 (85)
35 2dal_A Protein KIAA0794; FAS a 86.6 0.84 2.9E-05 31.4 4.2 33 178-210 18-50 (62)
36 1vek_A UBP14, ubiquitin-specif 85.1 0.99 3.4E-05 33.0 4.2 36 172-208 26-62 (84)
37 1vej_A Riken cDNA 4931431F19; 84.6 1 3.5E-05 32.6 3.9 35 176-211 30-65 (74)
38 4ae4_A Ubiquitin-associated pr 84.5 0.72 2.5E-05 35.8 3.3 24 186-209 86-109 (118)
39 2dzl_A Protein FAM100B; UBA-li 83.9 1.3 4.5E-05 31.0 4.2 33 178-210 20-52 (66)
40 1otr_A Protein CUE2; protein-p 83.9 0.91 3.1E-05 30.4 3.2 36 176-211 5-41 (49)
41 2dna_A Unnamed protein product 82.3 1 3.5E-05 32.1 3.1 33 178-211 22-55 (67)
42 2cp8_A NEXT to BRCA1 gene 1 pr 82.2 0.92 3.1E-05 31.2 2.7 25 187-211 20-45 (54)
43 1dv0_A DNA repair protein HHR2 76.8 1.9 6.4E-05 28.2 2.8 30 178-208 7-36 (47)
44 2cwb_A Chimera of immunoglobul 75.9 2.4 8.3E-05 32.7 3.6 28 184-211 74-102 (108)
45 2dam_A ETEA protein; KIAA0887, 75.6 3.4 0.00012 28.9 4.1 33 178-210 21-54 (67)
46 1wgl_A TOLL-interacting protei 72.9 3.4 0.00012 28.4 3.5 38 174-211 8-46 (59)
47 3e21_A HFAF1, FAS-associated f 71.7 4.3 0.00015 26.6 3.6 33 179-211 9-42 (45)
48 1nri_A Hypothetical protein HI 70.2 1.2 4.1E-05 38.6 0.8 36 176-211 245-280 (306)
49 3k9o_A Ubiquitin-conjugating e 65.3 5.6 0.00019 32.7 3.9 34 177-211 165-198 (201)
50 4dbg_B Ring finger protein 31; 62.5 4.3 0.00015 33.5 2.6 36 177-212 104-139 (162)
51 4dbg_B Ring finger protein 31; 60.9 6.8 0.00023 32.3 3.5 24 187-210 74-97 (162)
52 2cos_A Serine/threonine protei 59.4 4.7 0.00016 27.7 1.9 33 174-207 8-40 (54)
53 1eej_A Thiol:disulfide interch 58.3 21 0.00071 28.6 6.0 43 69-122 2-51 (216)
54 4ae4_A Ubiquitin-associated pr 58.1 7.3 0.00025 30.1 3.1 25 185-210 17-41 (118)
55 3k6g_A Telomeric repeat-bindin 57.0 15 0.0005 28.5 4.6 36 176-211 14-49 (111)
56 3ihp_A Ubiquitin carboxyl-term 51.5 11 0.00037 37.6 3.9 36 173-209 718-753 (854)
57 1vdl_A Ubiquitin carboxyl-term 49.6 8.2 0.00028 28.4 2.0 19 194-212 44-62 (80)
58 2dhy_A CUE domain-containing p 44.4 20 0.00067 25.2 3.3 25 187-211 31-55 (67)
59 1oai_A Nuclear RNA export fact 42.9 36 0.0012 23.1 4.3 33 179-211 11-43 (59)
60 1nri_A Hypothetical protein HI 37.2 7.1 0.00024 33.7 0.0 30 179-208 275-304 (306)
61 3e46_A Ubiquitin-conjugating e 34.7 35 0.0012 29.4 4.0 32 179-211 219-250 (253)
62 3bny_A Aristolochene synthase; 32.9 24 0.00081 29.8 2.6 24 177-200 243-266 (320)
63 1oqy_A HHR23A, UV excision rep 32.0 21 0.00071 32.4 2.2 34 177-211 170-203 (368)
64 2lva_A Ubiquitin carboxyl-term 36.5 11 0.00037 30.0 0.0 19 194-212 38-56 (129)
65 2jp7_A MRNA export factor MEX6 29.4 58 0.002 22.0 3.6 33 179-211 10-42 (57)
66 1di1_A Aristolochene synthase; 29.4 30 0.001 28.8 2.6 24 177-200 229-252 (300)
67 2xvc_A ESCRT-III, SSO0910; cel 27.3 52 0.0018 22.8 3.1 22 178-199 27-48 (59)
68 1tte_A Ubiquitin-conjugating e 26.3 49 0.0017 27.6 3.4 32 172-204 166-197 (215)
69 1ps1_A Pentalenene synthase; a 25.7 45 0.0015 28.3 3.1 25 175-199 233-257 (337)
70 2fpn_A YWMB; structural genomo 24.5 35 0.0012 28.8 2.1 54 69-123 144-211 (216)
71 1wj7_A Hypothetical protein (R 24.1 62 0.0021 24.7 3.3 33 171-203 49-81 (104)
72 4ham_A LMO2241 protein; struct 23.4 50 0.0017 24.7 2.7 20 180-199 42-61 (134)
73 3tqn_A Transcriptional regulat 22.1 67 0.0023 23.3 3.1 22 178-199 35-56 (113)
74 1t3b_A Thiol:disulfide interch 21.5 47 0.0016 26.5 2.3 41 71-122 4-51 (211)
75 2qsf_X RAD23, UV excision repa 21.3 99 0.0034 25.3 4.2 31 177-208 132-162 (171)
76 4fp9_B Mterf domain-containing 20.8 21 0.00071 31.8 0.0 7 27-33 302-308 (335)
77 1cw0_A Protein (DNA mismatch e 20.4 63 0.0022 25.9 2.8 20 63-82 18-37 (155)
No 1
>1tr8_A Conserved protein (MTH177); chaperones, nascent polypeptide-associated complex, ribosome domain, ubiquitin, chaperone; 2.27A {Methanothermobacter marburgensis}
Probab=100.00 E-value=2.2e-36 Score=234.71 Aligned_cols=97 Identities=37% Similarity=0.558 Sum_probs=81.7
Q ss_pred HHHHHcCC--eecCCeeEEEEEecCceEEEecCCeEEe--eCCCceEEEecceeecchhhHHHHHHHHHhcCCCCCCCCC
Q 028127 74 KAMLKLGM--KPVTGVSRVTIKRTKNILFFISKPDVFK--SPNSETYVIFGEAKIEDLSTQLQTQAAQQFRMPDMGSVMA 149 (213)
Q Consensus 74 KamkKLGl--k~v~gV~rVtIrk~d~~~fVI~~PeV~k--~~gs~TYvIfGeak~ed~s~q~q~~aae~~~~~~~~~~~~ 149 (213)
|||+|||| ++|+||+||+||+.+ .+|||++|+||+ ++|++||+|||+++++++.
T Consensus 2 k~lkKLGl~~~~I~gV~eV~i~k~d-~~iv~~~P~V~~~~~~~~~Ty~I~Ge~~~~d~~--------------------- 59 (102)
T 1tr8_A 2 SHMKQMGMDMKDLRGVEEVVIKLKR-KEIIIKNPKVNVMEFMGQKTYQVTGKARERSLE--------------------- 59 (102)
T ss_dssp --------CCEEECCCCEEEEECSS-EEEEEESCEEEEEEETTEEEEEEESCEEEEEEE---------------------
T ss_pred chHHHcCCCceeCCCcEEEEEEeCC-EEEEECCCEEEEEcCCCCcEEEEEcCceeeccc---------------------
Confidence 68999999 799999999999999 899999999996 8999999999999987640
Q ss_pred CCCcchhhccCCCCccchhhccCCCCcccHHHHHhhhCCCHHHHHHHHHhcCCcHHHHHhhhc
Q 028127 150 KPDASSAAAGAQQDEEEEEVDETGVEPRDIDLVMTQAGVSRSKAVKALKTHNGDIVSAIMELT 212 (213)
Q Consensus 150 ~~~~~~~~~~~~~~e~eeevde~gi~eeDIeLVM~QagvSRekAikALke~nGDIV~AIM~Lt 212 (213)
+ +++|+++||+|||+||||||++|++||++||||||+|||.||
T Consensus 60 -----------------~---e~~i~~edi~lv~~q~~vs~~~A~~aL~~~~gDiv~Ai~~Lt 102 (102)
T 1tr8_A 60 -----------------A---EMEIPEDDIELVMNQTGASREDATRALQETGGDLAEAIMRLS 102 (102)
T ss_dssp -----------------E---ECCCCHHHHHHHHHHHCCCHHHHHHHHHHTTTCHHHHHHHC-
T ss_pred -----------------c---cCCCCHHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHhC
Confidence 0 168999999999999999999999999999999999999997
No 2
>3mce_A Nascent polypeptide-associated complex subunit Al; beta-barrel like structure, NAC, homodimer, chaperone; 2.40A {Homo sapiens}
Probab=99.87 E-value=6e-23 Score=146.37 Aligned_cols=57 Identities=65% Similarity=1.073 Sum_probs=51.0
Q ss_pred HHHHHHcCCeecCCeeEEEEEecCceEEEecCCeEEeeCCCceEEEecceeecchhh
Q 028127 73 RKAMLKLGMKPVTGVSRVTIKRTKNILFFISKPDVFKSPNSETYVIFGEAKIEDLST 129 (213)
Q Consensus 73 rKamkKLGlk~v~gV~rVtIrk~d~~~fVI~~PeV~k~~gs~TYvIfGeak~ed~s~ 129 (213)
|++|+||||++|+||+||+|||++|.+|+|++|+||++++++||+|||+++.+|+++
T Consensus 5 ~kal~KLglk~v~gI~rVtirK~~~~lf~i~~PdV~ksp~snTyvVFGeak~ed~~q 61 (61)
T 3mce_A 5 SPEFSKLGLRQVTGVTRVTIRKSKNILFVITKPDVYKSPASDTYIVFGEAKIEDLSQ 61 (61)
T ss_dssp SCCGGGTTCEECSSEEEEEEEETTTEEEEESSCEEEEC---CEEEEESCEEEECCC-
T ss_pred HHHHHHcCCeECCCEEEEEEEecCCEEEEECCCcEEEcCCCCeEEEEcccccccCCC
Confidence 467999999999999999999999999999999999999999999999999999863
No 3
>3mcb_A Nascent polypeptide-associated complex subunit Al; beta-barrel like structure, NAC, heterodimer, chaperone; 1.90A {Homo sapiens} PDB: 3lkx_B
Probab=99.86 E-value=3.2e-22 Score=139.52 Aligned_cols=54 Identities=72% Similarity=1.169 Sum_probs=51.9
Q ss_pred HHHHcCCeecCCeeEEEEEecCceEEEecCCeEEeeCCCceEEEecceeecchh
Q 028127 75 AMLKLGMKPVTGVSRVTIKRTKNILFFISKPDVFKSPNSETYVIFGEAKIEDLS 128 (213)
Q Consensus 75 amkKLGlk~v~gV~rVtIrk~d~~~fVI~~PeV~k~~gs~TYvIfGeak~ed~s 128 (213)
+|+||||++|+||+||+|||++|.+|+|++|+||++++++||+|||+++.+|++
T Consensus 1 al~KLglk~v~gI~rVti~K~~~~lf~i~~P~V~ksp~s~TyvVfGeak~ed~~ 54 (54)
T 3mcb_A 1 AMSKLGLRQVTGVTRVTIRKSKNILFVITKPDVYKSPASDTYIVFGEAKIEDLS 54 (54)
T ss_dssp CGGGGTCEECTTEEEEEEESSSSEEEEESSCEEEECTTSSEEEEESCEEEEECC
T ss_pred CccccCCEECCCEEEEEEEeCCCEEEEECCCcEEEcCCCCeEEEEcceeeccCC
Confidence 589999999999999999999999999999999999999999999999999874
No 4
>3mcb_B Transcription factor BTF3; beta-barrel like structure, NAC, heterodimer, chaperone; 1.90A {Homo sapiens}
Probab=99.22 E-value=2.2e-11 Score=85.91 Aligned_cols=48 Identities=21% Similarity=0.431 Sum_probs=45.2
Q ss_pred eecCCeeEEEEEecCceEEEecCCeEEeeCCCceEEEecceeecchhh
Q 028127 82 KPVTGVSRVTIKRTKNILFFISKPDVFKSPNSETYVIFGEAKIEDLST 129 (213)
Q Consensus 82 k~v~gV~rVtIrk~d~~~fVI~~PeV~k~~gs~TYvIfGeak~ed~s~ 129 (213)
..|+||+||+|+|.+|.+|+|++|.|+.++.+|||+|+|.+++++++.
T Consensus 2 ~~i~gIeEVnmfk~dg~vihF~nPkVqaS~~aNTfvv~G~~e~K~l~e 49 (58)
T 3mcb_B 2 NNISGIEEVNMFTNQGTVIHFNNPKVQASLAANTFTITGHAETKQLTE 49 (58)
T ss_dssp CEECCCCEEEEEETTSEEEEEESCEEEEETTTTEEEEESCEEEEEGGG
T ss_pred cccCCeeEEEEEecCCEEEEecCcceEEeeccceEEEecCCeeeEHHH
Confidence 478999999999999999999999999999999999999999998764
No 5
>3lkx_A Transcription factor BTF3; beta-barrel, chaperone; 2.50A {Homo sapiens}
Probab=99.19 E-value=4.2e-11 Score=86.41 Aligned_cols=48 Identities=21% Similarity=0.431 Sum_probs=44.3
Q ss_pred eecCCeeEEEEEecCceEEEecCCeEEeeCCCceEEEecceeecchhh
Q 028127 82 KPVTGVSRVTIKRTKNILFFISKPDVFKSPNSETYVIFGEAKIEDLST 129 (213)
Q Consensus 82 k~v~gV~rVtIrk~d~~~fVI~~PeV~k~~gs~TYvIfGeak~ed~s~ 129 (213)
..|+||+||+|+|.+|++|+|++|.|+.++.+|||+|+|.+++++++.
T Consensus 2 ~~i~gIeEVnmfk~dg~vihF~nPkVqaS~~aNT~vv~G~~e~K~l~e 49 (66)
T 3lkx_A 2 NNISGIEEVNMFTNQGTVIHFNNPKVQASLAANTFTITGHAETKQLTE 49 (66)
T ss_dssp EECCCEEEEEEEETTSEEEEEESCEEEEECC-CEEEEESCEEEEEGGG
T ss_pred cccCCeeEEEEEecCCEEEEecCcceEEeeccCeeEecCCCEEeEHHH
Confidence 578999999999999999999999999999999999999999998764
No 6
>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1
Probab=98.51 E-value=5.9e-08 Score=75.46 Aligned_cols=36 Identities=28% Similarity=0.409 Sum_probs=34.6
Q ss_pred cccHHHHHhhhCCCHHHHHHHHHhcCCcHHHHHhhh
Q 028127 176 PRDIDLVMTQAGVSRSKAVKALKTHNGDIVSAIMEL 211 (213)
Q Consensus 176 eeDIeLVM~QagvSRekAikALke~nGDIV~AIM~L 211 (213)
+++|++||++||||+++|++||.++||||..||+.|
T Consensus 40 eekVk~L~EmtG~seeeAr~AL~~~ngDl~~AI~~L 75 (104)
T 1wj7_A 40 EEKVKQLIDITGKNQDECVIALHDCNGDVNRAINVL 75 (104)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHhhCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 469999999999999999999999999999999988
No 7
>2cp9_A EF-TS, EF-TSMT, elongation factor TS, mitochondrial; UBA, structural genomics, human, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.2
Probab=98.17 E-value=1.7e-06 Score=61.90 Aligned_cols=41 Identities=27% Similarity=0.266 Sum_probs=38.3
Q ss_pred CCCCcccHHHHHhhhCCCHHHHHHHHHhcCCcHHHHHhhhc
Q 028127 172 TGVEPRDIDLVMTQAGVSRSKAVKALKTHNGDIVSAIMELT 212 (213)
Q Consensus 172 ~gi~eeDIeLVM~QagvSRekAikALke~nGDIV~AIM~Lt 212 (213)
..|+.++|+.+.++||++...+++||.++||||..||.-|.
T Consensus 6 ~~it~~~Vk~LRe~TGag~~dcKkAL~e~~GDi~~Ai~~Lr 46 (64)
T 2cp9_A 6 SGSSKELLMKLRRKTGYSFVNCKKALETCGGDLKQAEIWLH 46 (64)
T ss_dssp SCCCCHHHHHHHHHHCCCHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 35889999999999999999999999999999999998873
No 8
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=97.04 E-value=0.00061 Score=42.69 Aligned_cols=35 Identities=29% Similarity=0.342 Sum_probs=30.4
Q ss_pred cccHHHHHhhhCCCHHHHHHHHHhcCCcHHHHHhhh
Q 028127 176 PRDIDLVMTQAGVSRSKAVKALKTHNGDIVSAIMEL 211 (213)
Q Consensus 176 eeDIeLVM~QagvSRekAikALke~nGDIV~AIM~L 211 (213)
++.|..+|+. |.||+.|++||+.++||+-.|+--|
T Consensus 5 ~~~i~~L~~m-Gf~~~~a~~AL~~~~~n~e~A~~~L 39 (40)
T 1z96_A 5 NSKIAQLVSM-GFDPLEAAQALDAANGDLDVAASFL 39 (40)
T ss_dssp HHHHHHHHHT-TCCHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHc-CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 3468889987 9999999999999999998887544
No 9
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=94.86 E-value=0.015 Score=37.21 Aligned_cols=33 Identities=21% Similarity=0.236 Sum_probs=27.2
Q ss_pred cccHHHHHhhhCCCHHHHHHHHHhcCCcHHHHHh
Q 028127 176 PRDIDLVMTQAGVSRSKAVKALKTHNGDIVSAIM 209 (213)
Q Consensus 176 eeDIeLVM~QagvSRekAikALke~nGDIV~AIM 209 (213)
++.|..+|+ .|.+|+.|++||+.++||+=.|+=
T Consensus 5 e~~i~~L~~-MGF~~~~a~~AL~~~~~n~e~A~~ 37 (43)
T 2g3q_A 5 SLAVEELSG-MGFTEEEAHNALEKCNWDLEAATN 37 (43)
T ss_dssp HHHHHHHHT-TTSCHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHH-cCCCHHHHHHHHHHhCcCHHHHHH
Confidence 345777776 699999999999999999976653
No 10
>2ooa_A E3 ubiquitin-protein ligase CBL-B; alpha-helical domain; 1.56A {Homo sapiens} PDB: 2oob_A 2jnh_A 2do6_A
Probab=94.43 E-value=0.045 Score=37.61 Aligned_cols=29 Identities=17% Similarity=0.275 Sum_probs=26.0
Q ss_pred ccHHHHHhhhCCCHHHHHHHHHhcCCcHHH
Q 028127 177 RDIDLVMTQAGVSRSKAVKALKTHNGDIVS 206 (213)
Q Consensus 177 eDIeLVM~QagvSRekAikALke~nGDIV~ 206 (213)
+-|+-.|+. |.||+.|++||+-++|||--
T Consensus 13 ~~Ia~Lm~m-GFsr~~ai~AL~~a~nnve~ 41 (52)
T 2ooa_A 13 AKIAKLMGE-GYAFEEVKRALEIAQNNVEV 41 (52)
T ss_dssp HHHHHHHHT-TCCHHHHHHHHHHTTTCHHH
T ss_pred HHHHHHHHc-CCCHHHHHHHHHHhCCCHHH
Confidence 578888887 99999999999999999843
No 11
>2d9s_A CBL E3 ubiquitin protein ligase; UBA domain, dimer, protein binding, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=94.39 E-value=0.049 Score=37.57 Aligned_cols=29 Identities=34% Similarity=0.406 Sum_probs=25.8
Q ss_pred cHHHHHhhhCCCHHHHHHHHHhcCCcHHHH
Q 028127 178 DIDLVMTQAGVSRSKAVKALKTHNGDIVSA 207 (213)
Q Consensus 178 DIeLVM~QagvSRekAikALke~nGDIV~A 207 (213)
-|+..|++ |.||+.|++||.-++|||--|
T Consensus 12 ~I~~L~~l-GF~r~~ai~AL~~a~nnve~A 40 (53)
T 2d9s_A 12 EIERLMSQ-GYSYQDIQKALVIAHNNIEMA 40 (53)
T ss_dssp HHHHHHHH-TCCHHHHHHHHHHTTTCHHHH
T ss_pred HHHHHHHc-CCCHHHHHHHHHHhcCCHHHH
Confidence 39999987 999999999999999999443
No 12
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=94.35 E-value=0.045 Score=38.31 Aligned_cols=35 Identities=17% Similarity=0.357 Sum_probs=29.7
Q ss_pred CCcccHHHHHhhhCCCHHHHHHHHHhcCCcHHHHHh
Q 028127 174 VEPRDIDLVMTQAGVSRSKAVKALKTHNGDIVSAIM 209 (213)
Q Consensus 174 i~eeDIeLVM~QagvSRekAikALke~nGDIV~AIM 209 (213)
++++.|+.+|+ .|.+|+.|++||+.++||+=.|+=
T Consensus 8 ~~~~~I~~L~~-MGF~~~~a~~AL~~~~~nve~A~e 42 (63)
T 1wji_A 8 VDEKALKHITE-MGFSKEASRQALMDNGNNLEAALN 42 (63)
T ss_dssp SCHHHHHHHHT-TTCCHHHHHHHHHHTTSCHHHHHH
T ss_pred CCHHHHHHHHH-cCCCHHHHHHHHHHhCCCHHHHHH
Confidence 56777888876 699999999999999999866654
No 13
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=93.62 E-value=0.065 Score=37.11 Aligned_cols=34 Identities=26% Similarity=0.435 Sum_probs=28.6
Q ss_pred CCcccHHHHHhhhCCCHHHHHHHHHhcCCcHHHHH
Q 028127 174 VEPRDIDLVMTQAGVSRSKAVKALKTHNGDIVSAI 208 (213)
Q Consensus 174 i~eeDIeLVM~QagvSRekAikALke~nGDIV~AI 208 (213)
++++-|..+|+ .|.+|+.|++||+.++|++=.|+
T Consensus 8 ~~~~~v~~L~~-MGF~~~~a~~AL~~t~~nve~A~ 41 (63)
T 2dak_A 8 PPEDCVTTIVS-MGFSRDQALKALRATNNSLERAV 41 (63)
T ss_dssp CCHHHHHHHHH-HTCCHHHHHHHHHHTTSCSHHHH
T ss_pred CCHHHHHHHHH-cCCCHHHHHHHHHHcCCCHHHHH
Confidence 56677887777 79999999999999999975555
No 14
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=93.45 E-value=0.05 Score=38.71 Aligned_cols=32 Identities=19% Similarity=0.312 Sum_probs=26.9
Q ss_pred cccHHHHHhhhCCCHHHHHHHHHhcCCcHHHHH
Q 028127 176 PRDIDLVMTQAGVSRSKAVKALKTHNGDIVSAI 208 (213)
Q Consensus 176 eeDIeLVM~QagvSRekAikALke~nGDIV~AI 208 (213)
++.|+.|+. .|.|+..|++|||.++|+|-.|.
T Consensus 20 ~e~V~~Lvs-MGFs~~qA~kALKat~~NvErAa 51 (63)
T 1wgn_A 20 RQCVETVVN-MGYSYECVLRAMKKKGENIEQIL 51 (63)
T ss_dssp HHHHHHHHH-HHCCHHHHHHHHHHHCSCHHHHH
T ss_pred HHHHHHHHH-cCCCHHHHHHHHHHcCCCHHHHH
Confidence 356777774 59999999999999999997764
No 15
>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=93.24 E-value=0.092 Score=37.66 Aligned_cols=37 Identities=30% Similarity=0.409 Sum_probs=30.9
Q ss_pred CCCcccHHHHHhhhCCCHHHHHHHHHhcCCcHHHHHhh
Q 028127 173 GVEPRDIDLVMTQAGVSRSKAVKALKTHNGDIVSAIME 210 (213)
Q Consensus 173 gi~eeDIeLVM~QagvSRekAikALke~nGDIV~AIM~ 210 (213)
.++++.|..+|+ .|.+|..|++||+.++|++=.|+=-
T Consensus 27 ~~~~~~v~~L~~-MGF~~~~a~~AL~~t~~nve~Ave~ 63 (73)
T 1wiv_A 27 DIDQSSVDTLLS-FGFAEDVARKALKASGGDIEKATDW 63 (73)
T ss_dssp SSCHHHHHHHHH-HTCCHHHHHHHHHHTTSCHHHHHHH
T ss_pred CCCHHHHHHHHH-cCCCHHHHHHHHHHhCCCHHHHHHH
Confidence 467778888775 6999999999999999999777643
No 16
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=92.97 E-value=0.099 Score=37.79 Aligned_cols=36 Identities=19% Similarity=0.316 Sum_probs=30.0
Q ss_pred CCcccHHHHHhhhCCCHHHHHHHHHhcCCcHHHHHhh
Q 028127 174 VEPRDIDLVMTQAGVSRSKAVKALKTHNGDIVSAIME 210 (213)
Q Consensus 174 i~eeDIeLVM~QagvSRekAikALke~nGDIV~AIM~ 210 (213)
..++.|..+|+ .|.+|+.|++||+.++||+=.|+=-
T Consensus 28 ~~ee~I~~L~e-MGF~r~~a~~AL~~~~~nve~Ave~ 63 (73)
T 1vg5_A 28 ASEEQIQKLVA-MGFDRTQVEVALAAADDDLTVAVEI 63 (73)
T ss_dssp CCHHHHHHHHT-TTCCHHHHHHHHHHHTSCHHHHHHH
T ss_pred ccHHHHHHHHH-cCCCHHHHHHHHHHhCCCHHHHHHH
Confidence 34667888886 6999999999999999999777643
No 17
>1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.5.2.1
Probab=92.86 E-value=0.14 Score=35.73 Aligned_cols=35 Identities=31% Similarity=0.462 Sum_probs=29.4
Q ss_pred CCCcccHHHHHhhhCCCHHHHHHHHHhc-CCcHHHHH
Q 028127 173 GVEPRDIDLVMTQAGVSRSKAVKALKTH-NGDIVSAI 208 (213)
Q Consensus 173 gi~eeDIeLVM~QagvSRekAikALke~-nGDIV~AI 208 (213)
.+++.-|..+|+ .|.+|..|++||+.+ ||++=.|+
T Consensus 7 ~~~~~~v~~L~~-MGF~~~~a~~AL~~t~~~nve~A~ 42 (64)
T 1whc_A 7 GAELTALESLIE-MGFPRGRAEKALALTGNQGIEAAM 42 (64)
T ss_dssp CCCCCHHHHHHT-TTCCHHHHHHHHHHHTSCCHHHHH
T ss_pred CCCHHHHHHHHH-cCCCHHHHHHHHHHhcCCCHHHHH
Confidence 467778888886 799999999999999 79976554
No 18
>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=92.77 E-value=0.11 Score=38.48 Aligned_cols=35 Identities=20% Similarity=0.274 Sum_probs=29.6
Q ss_pred CCCcccHHHHHhhhCCCHHHHHHHHHhcCCcHHHHH
Q 028127 173 GVEPRDIDLVMTQAGVSRSKAVKALKTHNGDIVSAI 208 (213)
Q Consensus 173 gi~eeDIeLVM~QagvSRekAikALke~nGDIV~AI 208 (213)
.++++-|..+|+ .|.+|..|++||+.++||+=.|+
T Consensus 27 ~~~ee~I~~Lv~-MGF~~~~A~~AL~~t~gdve~A~ 61 (83)
T 1veg_A 27 SPSQESINQLVY-MGFDTVVAEAALRVFGGNVQLAA 61 (83)
T ss_dssp CCCHHHHHHHHH-HSCCHHHHHHHHHHTTTCHHHHH
T ss_pred CCCHHHHHHHHH-cCCCHHHHHHHHHHcCCCHHHHH
Confidence 346778888886 59999999999999999986665
No 19
>2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=92.74 E-value=0.15 Score=35.66 Aligned_cols=34 Identities=26% Similarity=0.492 Sum_probs=28.2
Q ss_pred CCcccHHHHHhhhCCCHHHHHHHHHhcCC-cHHHHH
Q 028127 174 VEPRDIDLVMTQAGVSRSKAVKALKTHNG-DIVSAI 208 (213)
Q Consensus 174 i~eeDIeLVM~QagvSRekAikALke~nG-DIV~AI 208 (213)
+++..|..+|+ .|.+|+.|++||+.++| ++=.|+
T Consensus 18 ~~e~~i~~L~~-MGF~~~~a~~AL~~t~~~nve~A~ 52 (64)
T 2cpw_A 18 KHGSALDVLLS-MGFPRARAQKALASTGGRSVQTAC 52 (64)
T ss_dssp SCCCHHHHHHH-HTCCHHHHHHHHHHTTTSCHHHHH
T ss_pred CCHHHHHHHHH-cCCCHHHHHHHHHHcCCCCHHHHH
Confidence 45667887776 79999999999999998 886654
No 20
>2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=92.14 E-value=0.17 Score=37.27 Aligned_cols=35 Identities=20% Similarity=0.326 Sum_probs=30.1
Q ss_pred CCCcccHHHHHhhhCCCHHHHHHHHHhcCCcHHHHH
Q 028127 173 GVEPRDIDLVMTQAGVSRSKAVKALKTHNGDIVSAI 208 (213)
Q Consensus 173 gi~eeDIeLVM~QagvSRekAikALke~nGDIV~AI 208 (213)
.++++-|..+|+ .|.+|..|++||+.++|++=.|+
T Consensus 27 ~~~e~~i~~L~~-MGF~~~~a~~AL~~t~~nve~A~ 61 (83)
T 2dai_A 27 RVDEAALRQLTE-MGFPENRATKALQLNHMSVPQAM 61 (83)
T ss_dssp SCCHHHHHHHHH-HTCCHHHHHHHHHHTTSCHHHHH
T ss_pred CCCHHHHHHHHH-cCCCHHHHHHHHHHhCCCHHHHH
Confidence 467788888886 79999999999999999986665
No 21
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=91.75 E-value=0.12 Score=34.14 Aligned_cols=32 Identities=22% Similarity=0.322 Sum_probs=25.7
Q ss_pred ccHHHHHhhhCCCHHHHHHHHHhcCCcHHHHHh
Q 028127 177 RDIDLVMTQAGVSRSKAVKALKTHNGDIVSAIM 209 (213)
Q Consensus 177 eDIeLVM~QagvSRekAikALke~nGDIV~AIM 209 (213)
+.|..+|+ .|.+|+.|++||+.++||+=.|+=
T Consensus 10 ~~i~~L~~-MGF~~~~a~~AL~~~~~n~e~A~e 41 (49)
T 1ify_A 10 TMLTEIMS-MGYERERVVAALRASYNNPHRAVE 41 (49)
T ss_dssp HHHHHHHH-TTCCHHHHHHHHHTTTSCSHHHHH
T ss_pred HHHHHHHH-cCCCHHHHHHHHHHhCCCHHHHHH
Confidence 35655554 599999999999999999877763
No 22
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=91.73 E-value=0.18 Score=33.75 Aligned_cols=35 Identities=29% Similarity=0.472 Sum_probs=28.8
Q ss_pred cccHHHHHhhhCC-CHHHHHHHHHhcCCcHHHHHhhh
Q 028127 176 PRDIDLVMTQAGV-SRSKAVKALKTHNGDIVSAIMEL 211 (213)
Q Consensus 176 eeDIeLVM~Qagv-SRekAikALke~nGDIV~AIM~L 211 (213)
+..|..+++ .|. +|..|++||+.++||+=.||--|
T Consensus 13 ~~~l~~L~~-MGF~~~~~~~~AL~~t~gn~e~A~e~L 48 (52)
T 2jy5_A 13 QQQLEQLSA-MGFLNREANLQALIATGGDINAAIERL 48 (52)
T ss_dssp HHHHHHHHH-TTCCCHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHH-cCCCCHHHHHHHHHHhCCCHHHHHHHH
Confidence 446777665 588 99999999999999998887655
No 23
>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=91.70 E-value=0.17 Score=32.85 Aligned_cols=34 Identities=26% Similarity=0.467 Sum_probs=28.0
Q ss_pred CCCcccHHHHHhhhCCCHHHHHHHHHhcCCcHHHHH
Q 028127 173 GVEPRDIDLVMTQAGVSRSKAVKALKTHNGDIVSAI 208 (213)
Q Consensus 173 gi~eeDIeLVM~QagvSRekAikALke~nGDIV~AI 208 (213)
.++++.|..+|+ .|.+|+.|++||+.++ ++=.|+
T Consensus 7 ~~~~~~v~~L~~-MGF~~~~a~~AL~~~~-n~e~A~ 40 (47)
T 2ekk_A 7 GVNQQQLQQLMD-MGFTREHAMEALLNTS-TMEQAT 40 (47)
T ss_dssp SSCHHHHHHHHH-HHCCHHHHHHHHHHSC-SHHHHH
T ss_pred CCCHHHHHHHHH-cCCCHHHHHHHHHHcC-CHHHHH
Confidence 467778888887 7999999999999994 765554
No 24
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=91.55 E-value=0.18 Score=33.81 Aligned_cols=33 Identities=30% Similarity=0.489 Sum_probs=26.8
Q ss_pred cHHHHHhhhCC-CHHHHHHHHHhcCCcHHHHHhhh
Q 028127 178 DIDLVMTQAGV-SRSKAVKALKTHNGDIVSAIMEL 211 (213)
Q Consensus 178 DIeLVM~Qagv-SRekAikALke~nGDIV~AIM~L 211 (213)
.|..+++ .|. +|..|++||+.++||+=.||--|
T Consensus 14 ~l~~L~~-MGF~~~~~~~~AL~~t~gnve~Ave~L 47 (53)
T 2knz_A 14 QLEQLNS-MGFINREANLQALIATGGDINAAIERL 47 (53)
T ss_dssp HHHHHHT-TTCCCHHHHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHH-cCCCCHHHHHHHHHHhCCCHHHHHHHH
Confidence 4666664 588 99999999999999998887544
No 25
>2dag_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5 (USP 5), UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=90.83 E-value=0.23 Score=35.61 Aligned_cols=35 Identities=17% Similarity=0.192 Sum_probs=28.1
Q ss_pred CCCcccHHHHHhhhCCCHHHHHHHHHhcCC-cHHHHH
Q 028127 173 GVEPRDIDLVMTQAGVSRSKAVKALKTHNG-DIVSAI 208 (213)
Q Consensus 173 gi~eeDIeLVM~QagvSRekAikALke~nG-DIV~AI 208 (213)
.++++-|..+|+ .|.+|+.|++||+.++| ++=.|+
T Consensus 7 ~~~e~~v~~L~~-MGF~~~~a~~AL~~t~n~~ve~A~ 42 (74)
T 2dag_A 7 GLDESVIIQLVE-MGFPMDACRKAVYYTGNSGAEAAM 42 (74)
T ss_dssp SSCHHHHHHHHH-HSCCHHHHHHHHHHHTSCCHHHHH
T ss_pred CCCHHHHHHHHH-cCCCHHHHHHHHHHhCCCCHHHHH
Confidence 356677777776 79999999999999997 775554
No 26
>2crn_A Ubash3A protein; compact three-helix bundle, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=90.69 E-value=0.39 Score=33.54 Aligned_cols=35 Identities=23% Similarity=0.360 Sum_probs=28.7
Q ss_pred CCCcccHHHHHhhhCCCHHHHHHHHHhcCC-cHHHHH
Q 028127 173 GVEPRDIDLVMTQAGVSRSKAVKALKTHNG-DIVSAI 208 (213)
Q Consensus 173 gi~eeDIeLVM~QagvSRekAikALke~nG-DIV~AI 208 (213)
..+++.|.-+|+ .|.+|+.|++||..++| ++=.|+
T Consensus 7 ~~~e~~v~~L~~-MGF~~~~a~~AL~~t~n~~~e~A~ 42 (64)
T 2crn_A 7 GSSPSLLEPLLA-MGFPVHTALKALAATGRKTAEEAL 42 (64)
T ss_dssp CCSCSSHHHHHH-TSCCHHHHHHHHHHHTSCCHHHHH
T ss_pred CCCHHHHHHHHH-cCCCHHHHHHHHHHhCCCCHHHHH
Confidence 456778888877 79999999999999987 775554
No 27
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=90.67 E-value=0.28 Score=32.18 Aligned_cols=33 Identities=21% Similarity=0.333 Sum_probs=25.4
Q ss_pred cHHHHHhhhCCC-HHHHHHHHHhcCCcHHHHHhhh
Q 028127 178 DIDLVMTQAGVS-RSKAVKALKTHNGDIVSAIMEL 211 (213)
Q Consensus 178 DIeLVM~QagvS-RekAikALke~nGDIV~AIM~L 211 (213)
-|.-++ ..|.+ |..+++||+.++||+=.||--|
T Consensus 10 ~i~~L~-~MGF~d~~~~~~AL~~~~gnv~~Ave~L 43 (46)
T 2bwb_A 10 QLRQLN-DMGFFDFDRNVAALRRSGGSVQGALDSL 43 (46)
T ss_dssp HHHHHH-HTTCCCHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHH-HcCCCcHHHHHHHHHHhCCCHHHHHHHH
Confidence 454444 45875 7788999999999998888655
No 28
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=90.15 E-value=0.21 Score=33.86 Aligned_cols=34 Identities=21% Similarity=0.370 Sum_probs=25.7
Q ss_pred ccHHHHHhhhCCCHHH-HHHHHHhcCCcHHHHHhhh
Q 028127 177 RDIDLVMTQAGVSRSK-AVKALKTHNGDIVSAIMEL 211 (213)
Q Consensus 177 eDIeLVM~QagvSRek-AikALke~nGDIV~AIM~L 211 (213)
.-|..++ ..|.++.. +++||+.++|||=.||--|
T Consensus 11 ~~l~~L~-~MGF~d~~~n~~AL~~~~Gdv~~Ave~L 45 (54)
T 2dah_A 11 VQLEQLR-SMGFLNREANLQALIATGGDVDAAVEKL 45 (54)
T ss_dssp HHHHHHH-HHTCCCHHHHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHH-HcCCCcHHHHHHHHHHcCCCHHHHHHHH
Confidence 3465555 45997765 5999999999998888655
No 29
>1v92_A NSFL1 cofactor P47; 3-helix bundle, recombination; NMR {Rattus norvegicus} SCOP: a.5.2.3
Probab=89.95 E-value=0.33 Score=30.85 Aligned_cols=33 Identities=15% Similarity=0.177 Sum_probs=29.0
Q ss_pred cHHHHHhhhCCCHHHHHHHHHhcCCcHHHHHhh
Q 028127 178 DIDLVMTQAGVSRSKAVKALKTHNGDIVSAIME 210 (213)
Q Consensus 178 DIeLVM~QagvSRekAikALke~nGDIV~AIM~ 210 (213)
-|.-.++=|||++..|+..|..+++||-.||-.
T Consensus 8 ~i~~F~~iTg~~~~~A~~~L~~~~wdle~Ai~~ 40 (46)
T 1v92_A 8 ALREFVAVTGAEEDRARFFLESAGWDLQIALAS 40 (46)
T ss_dssp HHHHHHHHTCCCHHHHHHHHHHTTSCSHHHHHH
T ss_pred HHHHHHHHhCcCHHHHHHHHHHcCCCHHHHHHH
Confidence 467778889999999999999999999988743
No 30
>2oo9_A E3 ubiquitin-protein ligase CBL; alpha-helical domain, homodimer; 2.10A {Homo sapiens}
Probab=89.44 E-value=0.41 Score=32.07 Aligned_cols=30 Identities=33% Similarity=0.376 Sum_probs=26.1
Q ss_pred ccHHHHHhhhCCCHHHHHHHHHhcCCcHHHH
Q 028127 177 RDIDLVMTQAGVSRSKAVKALKTHNGDIVSA 207 (213)
Q Consensus 177 eDIeLVM~QagvSRekAikALke~nGDIV~A 207 (213)
.-|...|++ |.||+.|++||--+++||--|
T Consensus 6 ~~I~~L~s~-Gf~~~~~~rAL~ia~Nnie~A 35 (46)
T 2oo9_A 6 SEIENLMSQ-GYSYQDIQKALVIAQNNIEMA 35 (46)
T ss_dssp HHHHHHHHT-TBCHHHHHHHHHHTTTCHHHH
T ss_pred HHHHHHHHc-CCCHHHHHHHHHHhhccHHHH
Confidence 357888887 999999999999999999654
No 31
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=88.90 E-value=0.41 Score=32.96 Aligned_cols=33 Identities=21% Similarity=0.324 Sum_probs=25.9
Q ss_pred cHHHHHhhhCCC-HHHHHHHHHhcCCcHHHHHhhh
Q 028127 178 DIDLVMTQAGVS-RSKAVKALKTHNGDIVSAIMEL 211 (213)
Q Consensus 178 DIeLVM~QagvS-RekAikALke~nGDIV~AIM~L 211 (213)
-|..+++ .|.+ |..+++||+.++|||=.||--|
T Consensus 20 qi~~L~~-MGF~d~~~~~~AL~~~~gnve~Ave~L 53 (58)
T 1wr1_B 20 QLRQLND-MGFFDFDRNVAALRRSGGSVQGALDSL 53 (58)
T ss_dssp HHHHHHH-HTCCCHHHHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHH-cCCCcHHHHHHHHHHhCCCHHHHHHHH
Confidence 4655554 5875 8888999999999998888655
No 32
>2juj_A E3 ubiquitin-protein ligase CBL; alpha helix, UBA domain, calcium, cytoplasm, metal- binding, phosphorylation, proto-oncogene, SH2 domain; NMR {Homo sapiens}
Probab=88.11 E-value=0.41 Score=33.26 Aligned_cols=30 Identities=30% Similarity=0.354 Sum_probs=26.2
Q ss_pred cccHHHHHhhhCCCHHHHHHHHHhcCCcHHH
Q 028127 176 PRDIDLVMTQAGVSRSKAVKALKTHNGDIVS 206 (213)
Q Consensus 176 eeDIeLVM~QagvSRekAikALke~nGDIV~ 206 (213)
+.-|...|++ |.||+.|++||.-++|||--
T Consensus 8 e~~Ia~L~sm-Gfsr~da~~AL~ia~Ndv~~ 37 (56)
T 2juj_A 8 SSEIENLMSQ-GYSYQDIQKALVIAQNNIEM 37 (56)
T ss_dssp HHHHHHHHTT-TCCHHHHHHHHHHTTTCSHH
T ss_pred hHHHHHHHHc-CCCHHHHHHHHHHhcccHHH
Confidence 3478888987 99999999999999999844
No 33
>2lbc_A Ubiquitin carboxyl-terminal hydrolase 13; tandem UBA of USP13; NMR {Homo sapiens}
Probab=88.09 E-value=0.45 Score=36.65 Aligned_cols=37 Identities=19% Similarity=0.370 Sum_probs=30.4
Q ss_pred CCcccHHHHHhhhCCCHHHHHHHHHhcCCcHHHHHhhh
Q 028127 174 VEPRDIDLVMTQAGVSRSKAVKALKTHNGDIVSAIMEL 211 (213)
Q Consensus 174 i~eeDIeLVM~QagvSRekAikALke~nGDIV~AIM~L 211 (213)
+.+.-|.-+|+ .|++|..|++||+.++||+-.|+=-|
T Consensus 77 ~~e~~v~~L~~-MGF~~~~a~~AL~~~~~~~e~A~e~L 113 (126)
T 2lbc_A 77 PPEEIVAIITS-MGFQRNQAIQALRATNNNLERALDWI 113 (126)
T ss_dssp CCHHHHHHHHH-HTSCHHHHHHHHHHHTSCHHHHHHHH
T ss_pred cCHHHHHHHHH-cCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 56667887776 79999999999999999997776443
No 34
>2dkl_A Trinucleotide repeat containing 6C protein; TNRC6C, KIAA1582 protein, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=87.25 E-value=0.67 Score=34.16 Aligned_cols=33 Identities=30% Similarity=0.359 Sum_probs=27.5
Q ss_pred CcccHHHHHhhhCCCHHHHHHHHHhcCCcHHHHH
Q 028127 175 EPRDIDLVMTQAGVSRSKAVKALKTHNGDIVSAI 208 (213)
Q Consensus 175 ~eeDIeLVM~QagvSRekAikALke~nGDIV~AI 208 (213)
+++-|..+++ .|.+|..|++||+.++|++=.|+
T Consensus 21 n~~~I~qL~~-MGF~~~~a~~AL~~~n~n~e~A~ 53 (85)
T 2dkl_A 21 MSRLIKQLTD-MGFPREPAEEALKSNNMNLDQAM 53 (85)
T ss_dssp HHHHHHHHHH-HTCCHHHHHHHHHHTTSCHHHHH
T ss_pred CHHHHHHHHH-cCCCHHHHHHHHHHcCCCHHHHH
Confidence 4556776665 69999999999999999997776
No 35
>2dal_A Protein KIAA0794; FAS associted factor 1, UBA-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=86.63 E-value=0.84 Score=31.42 Aligned_cols=33 Identities=24% Similarity=0.222 Sum_probs=29.9
Q ss_pred cHHHHHhhhCCCHHHHHHHHHhcCCcHHHHHhh
Q 028127 178 DIDLVMTQAGVSRSKAVKALKTHNGDIVSAIME 210 (213)
Q Consensus 178 DIeLVM~QagvSRekAikALke~nGDIV~AIM~ 210 (213)
-|.-.|.=|||++..|+..|..+++||-.||-.
T Consensus 18 ~i~qF~~iTg~~~~~A~~~Le~~~WnLe~Av~~ 50 (62)
T 2dal_A 18 LIQQFTTITGASESVGKHMLEACNNNLEMAVTM 50 (62)
T ss_dssp HHHHHHHHTCCCHHHHHHHHHTTTSCHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 588888999999999999999999999999854
No 36
>1vek_A UBP14, ubiquitin-specific protease 14, putative; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=85.12 E-value=0.99 Score=33.04 Aligned_cols=36 Identities=14% Similarity=0.164 Sum_probs=29.1
Q ss_pred CCCCcccHHHHHhhhCCCHHHHHHHHHhcC-CcHHHHH
Q 028127 172 TGVEPRDIDLVMTQAGVSRSKAVKALKTHN-GDIVSAI 208 (213)
Q Consensus 172 ~gi~eeDIeLVM~QagvSRekAikALke~n-GDIV~AI 208 (213)
..++++-|..+|+ .|.+|..|++||+.++ |++=.|+
T Consensus 26 ~~~~e~~v~~L~~-MGF~~~~a~~AL~~t~n~n~e~A~ 62 (84)
T 1vek_A 26 PVANEEIVAQLVS-MGFSQLHCQKAAINTSNAGVEEAM 62 (84)
T ss_dssp CCCCHHHHHHHHH-HTCCHHHHHHHHHHTTTCCHHHHH
T ss_pred CCCCHHHHHHHHH-cCCCHHHHHHHHHHHcCCCHHHHH
Confidence 3467788888886 7999999999999985 6886554
No 37
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=84.55 E-value=1 Score=32.57 Aligned_cols=35 Identities=29% Similarity=0.476 Sum_probs=27.3
Q ss_pred cccHHHHHhhhCC-CHHHHHHHHHhcCCcHHHHHhhh
Q 028127 176 PRDIDLVMTQAGV-SRSKAVKALKTHNGDIVSAIMEL 211 (213)
Q Consensus 176 eeDIeLVM~Qagv-SRekAikALke~nGDIV~AIM~L 211 (213)
+.-|..+++ .|. .|..+++||+.++|||=.||=-|
T Consensus 30 e~qi~qL~e-MGF~dr~~~~~AL~~t~Gnve~Ave~L 65 (74)
T 1vej_A 30 QQELEELKA-LGFANRDANLQALVATDGDIHAAIEML 65 (74)
T ss_dssp HHHHHHHHH-HTCCCHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHHH-cCCCcHHHHHHHHHHhCCCHHHHHHHH
Confidence 345666664 587 58999999999999998887554
No 38
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=84.47 E-value=0.72 Score=35.81 Aligned_cols=24 Identities=25% Similarity=0.255 Sum_probs=21.7
Q ss_pred hCCCHHHHHHHHHhcCCcHHHHHh
Q 028127 186 AGVSRSKAVKALKTHNGDIVSAIM 209 (213)
Q Consensus 186 agvSRekAikALke~nGDIV~AIM 209 (213)
.|.++..|++||+.||||+=.|+=
T Consensus 86 MGF~~~~a~~AL~~~~nd~erAle 109 (118)
T 4ae4_A 86 MGFELKDIKEVLLLHNNDQDNALE 109 (118)
T ss_dssp TTCCHHHHHHHHHHTTTCHHHHHH
T ss_pred cCCCHHHHHHHHHHcCCCHHHHHH
Confidence 499999999999999999988863
No 39
>2dzl_A Protein FAM100B; UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=83.93 E-value=1.3 Score=31.04 Aligned_cols=33 Identities=18% Similarity=0.224 Sum_probs=29.7
Q ss_pred cHHHHHhhhCCCHHHHHHHHHhcCCcHHHHHhh
Q 028127 178 DIDLVMTQAGVSRSKAVKALKTHNGDIVSAIME 210 (213)
Q Consensus 178 DIeLVM~QagvSRekAikALke~nGDIV~AIM~ 210 (213)
-|.-.|.-|||++..|+..|..+++||-.||-.
T Consensus 20 ~i~qF~~iTg~~~~~A~~~Le~~~WdLe~Al~~ 52 (66)
T 2dzl_A 20 MINQFVLAAGCAADQAKQLLQAAHWQFETALST 52 (66)
T ss_dssp HHHHHHHHHCCCHHHHHHHHHTTTTCHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 478888999999999999999999999988754
No 40
>1otr_A Protein CUE2; protein-protein complex, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.4
Probab=83.92 E-value=0.91 Score=30.42 Aligned_cols=36 Identities=25% Similarity=0.274 Sum_probs=30.3
Q ss_pred cccHHHHHhhh-CCCHHHHHHHHHhcCCcHHHHHhhh
Q 028127 176 PRDIDLVMTQA-GVSRSKAVKALKTHNGDIVSAIMEL 211 (213)
Q Consensus 176 eeDIeLVM~Qa-gvSRekAikALke~nGDIV~AIM~L 211 (213)
+++|.++++=. +|++..++.+|+.+|||+=.||-.|
T Consensus 5 e~~v~~L~EMFP~~~~~~ik~~L~~~~Gd~d~Ai~~L 41 (49)
T 1otr_A 5 ESKLSILMDMFPAISKSKLQVHLLENNNDLDLTIGLL 41 (49)
T ss_dssp HHHHHHHHHHCSSSCHHHHHHHHHHTTTCSHHHHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 35778888775 9999999999999999998777554
No 41
>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=82.34 E-value=1 Score=32.06 Aligned_cols=33 Identities=24% Similarity=0.447 Sum_probs=23.7
Q ss_pred cHHHHHhhhCC-CHHHHHHHHHhcCCcHHHHHhhh
Q 028127 178 DIDLVMTQAGV-SRSKAVKALKTHNGDIVSAIMEL 211 (213)
Q Consensus 178 DIeLVM~Qagv-SRekAikALke~nGDIV~AIM~L 211 (213)
-|..+++ .|. .|...++||+.++|||-.||=-|
T Consensus 22 ql~qL~~-MGF~d~~an~~AL~at~Gnve~Ave~L 55 (67)
T 2dna_A 22 EMECLQA-MGFVNYNANLQALIATDGDTNAAIYKL 55 (67)
T ss_dssp HHHHHHH-HTCCCHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHH-cCCCcHHHHHHHHHHcCCCHHHHHHHH
Confidence 4444443 475 45566999999999998888554
No 42
>2cp8_A NEXT to BRCA1 gene 1 protein; UBA domain, structural genomics, human, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=82.19 E-value=0.92 Score=31.15 Aligned_cols=25 Identities=36% Similarity=0.594 Sum_probs=22.9
Q ss_pred CC-CHHHHHHHHHhcCCcHHHHHhhh
Q 028127 187 GV-SRSKAVKALKTHNGDIVSAIMEL 211 (213)
Q Consensus 187 gv-SRekAikALke~nGDIV~AIM~L 211 (213)
|. .+..-++||+.+||+|=.||..|
T Consensus 20 GF~D~~~N~~aL~~~~gnv~~aI~~L 45 (54)
T 2cp8_A 20 GFCDRQLNLRLLKKHNYNILQVVTEL 45 (54)
T ss_dssp TCCCHHHHHHHHTTTTTCHHHHHHHH
T ss_pred CCCcHHHHHHHHHHcCCCHHHHHHHH
Confidence 54 89999999999999999999887
No 43
>1dv0_A DNA repair protein HHR23A; helical bundle, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 1f4i_A
Probab=76.78 E-value=1.9 Score=28.18 Aligned_cols=30 Identities=17% Similarity=0.119 Sum_probs=23.6
Q ss_pred cHHHHHhhhCCCHHHHHHHHHhcCCcHHHHH
Q 028127 178 DIDLVMTQAGVSRSKAVKALKTHNGDIVSAI 208 (213)
Q Consensus 178 DIeLVM~QagvSRekAikALke~nGDIV~AI 208 (213)
-|+.++ ..|.+|..|++||..+++|+=.|.
T Consensus 7 aI~rL~-~mGF~~~~a~~Al~a~~~n~e~A~ 36 (47)
T 1dv0_A 7 AIERLK-ALGFPESLVIQAYFACEKNENLAA 36 (47)
T ss_dssp HHTTTT-TTTCCHHHHHHHHTTTTSCHHHHH
T ss_pred HHHHHH-HcCCCHHHHHHHHHHcCCCHHHHH
Confidence 344444 349999999999999999986664
No 44
>2cwb_A Chimera of immunoglobulin G binding protein G and ubiquitin-like protein SB132; helical bundle, protein binding; NMR {Streptococcus SP} PDB: 2den_A
Probab=75.88 E-value=2.4 Score=32.66 Aligned_cols=28 Identities=25% Similarity=0.481 Sum_probs=22.8
Q ss_pred hhhCC-CHHHHHHHHHhcCCcHHHHHhhh
Q 028127 184 TQAGV-SRSKAVKALKTHNGDIVSAIMEL 211 (213)
Q Consensus 184 ~Qagv-SRekAikALke~nGDIV~AIM~L 211 (213)
...|. .|..+++||+.++|||=.||=.|
T Consensus 74 ~eMGF~d~~~ni~AL~~t~Gdve~AVe~L 102 (108)
T 2cwb_A 74 RDMGIQDDELSLRALQATGGDIQAALELI 102 (108)
T ss_dssp HTTTCCCHHHHHHHHHHHTSCHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHhCCCHHHHHHHH
Confidence 34587 56899999999999998887655
No 45
>2dam_A ETEA protein; KIAA0887, UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=75.61 E-value=3.4 Score=28.88 Aligned_cols=33 Identities=21% Similarity=0.267 Sum_probs=29.1
Q ss_pred cHHHHHhhhC-CCHHHHHHHHHhcCCcHHHHHhh
Q 028127 178 DIDLVMTQAG-VSRSKAVKALKTHNGDIVSAIME 210 (213)
Q Consensus 178 DIeLVM~Qag-vSRekAikALke~nGDIV~AIM~ 210 (213)
-|.--|.=|| ++...|+..|..||+||-.||-.
T Consensus 21 ~i~qF~~ITg~~d~~~A~~~Le~~~WnLe~Av~~ 54 (67)
T 2dam_A 21 KLLQFQDLTGIESMDQCRHTLEQHNWNIEAAVQD 54 (67)
T ss_dssp HHHHHHHHHCCSCHHHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 4777788899 99999999999999999988854
No 46
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=72.87 E-value=3.4 Score=28.36 Aligned_cols=38 Identities=16% Similarity=0.232 Sum_probs=31.5
Q ss_pred CCcccHHHHHhhh-CCCHHHHHHHHHhcCCcHHHHHhhh
Q 028127 174 VEPRDIDLVMTQA-GVSRSKAVKALKTHNGDIVSAIMEL 211 (213)
Q Consensus 174 i~eeDIeLVM~Qa-gvSRekAikALke~nGDIV~AIM~L 211 (213)
+.+++|..+.+-. +++++....+|+.++||+=.||=.|
T Consensus 8 ~~ee~l~~L~emFP~ld~~~I~~vL~a~~gdvd~aI~~L 46 (59)
T 1wgl_A 8 CSEEDLKAIQDMFPNMDQEVIRSVLEAQRGNKDAAINSL 46 (59)
T ss_dssp SCHHHHHHHHHHCSSSCHHHHHHHHTTTTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 5667888777766 9999999999999999997777555
No 47
>3e21_A HFAF1, FAS-associated factor 1; UBA, alternative splicing, apoptosis, nucleus, phosphoprotein; 1.73A {Homo sapiens}
Probab=71.70 E-value=4.3 Score=26.62 Aligned_cols=33 Identities=24% Similarity=0.366 Sum_probs=27.2
Q ss_pred HHHHHhhhCCCH-HHHHHHHHhcCCcHHHHHhhh
Q 028127 179 IDLVMTQAGVSR-SKAVKALKTHNGDIVSAIMEL 211 (213)
Q Consensus 179 IeLVM~QagvSR-ekAikALke~nGDIV~AIM~L 211 (213)
|.--.+=||++- ++|+.-|..||.||-.|+-..
T Consensus 9 ia~F~~iTG~~d~~~A~~~Lea~nWDLe~Av~~f 42 (45)
T 3e21_A 9 LADFQACTGIENIDEAITLLEQNNWDLVAAINGV 42 (45)
T ss_dssp HHHHHHHHCCCCHHHHHHHHHHTTTCHHHHHTTC
T ss_pred HHHHHHHHCCCCHHHHHHHHHHcCCcHHHHHHHH
Confidence 444556789995 999999999999999998653
No 48
>1nri_A Hypothetical protein HI0754; structural genomics, haemophilus influ PSI, protein structure initiative, midwest center for struc genomics; 1.90A {Haemophilus influenzae} SCOP: c.80.1.3
Probab=70.22 E-value=1.2 Score=38.64 Aligned_cols=36 Identities=22% Similarity=0.329 Sum_probs=11.9
Q ss_pred cccHHHHHhhhCCCHHHHHHHHHhcCCcHHHHHhhh
Q 028127 176 PRDIDLVMTQAGVSRSKAVKALKTHNGDIVSAIMEL 211 (213)
Q Consensus 176 eeDIeLVM~QagvSRekAikALke~nGDIV~AIM~L 211 (213)
..-...|+..+|||++.|.++|+.++|.+=-||+-+
T Consensus 245 ~r~~~~i~~~~~~~~~~~~~~l~~~~~~~~~a~~~~ 280 (306)
T 1nri_A 245 ARAVRIVMQATDCNKTLAEQTLLEADQNAKLAIMMI 280 (306)
T ss_dssp HHHHHHHHHHSCCCC---------------------
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCCChHHHHHHH
Confidence 344778899999999999999999999988888754
No 49
>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A
Probab=65.25 E-value=5.6 Score=32.68 Aligned_cols=34 Identities=24% Similarity=0.346 Sum_probs=27.1
Q ss_pred ccHHHHHhhhCCCHHHHHHHHHhcCCcHHHHHhhh
Q 028127 177 RDIDLVMTQAGVSRSKAVKALKTHNGDIVSAIMEL 211 (213)
Q Consensus 177 eDIeLVM~QagvSRekAikALke~nGDIV~AIM~L 211 (213)
+-|+..++. |.+|.+|+.||..+++|+-.|+=.|
T Consensus 165 ekV~~l~~M-Gf~~~~a~~AL~~~~wd~~~A~e~L 198 (201)
T 3k9o_A 165 KKIENLCAM-GFDRNAVIVALSSKSWDVETATELL 198 (201)
T ss_dssp HHHHHHHTT-TCCHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHc-CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 345555554 9999999999999999998876444
No 50
>4dbg_B Ring finger protein 31; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens}
Probab=62.46 E-value=4.3 Score=33.50 Aligned_cols=36 Identities=25% Similarity=0.356 Sum_probs=31.2
Q ss_pred ccHHHHHhhhCCCHHHHHHHHHhcCCcHHHHHhhhc
Q 028127 177 RDIDLVMTQAGVSRSKAVKALKTHNGDIVSAIMELT 212 (213)
Q Consensus 177 eDIeLVM~QagvSRekAikALke~nGDIV~AIM~Lt 212 (213)
.-+..+|+--...|+..++||..|+||+--||.+|+
T Consensus 104 ~K~~eL~s~G~~~~~~~~~aL~~~~Gdv~~Al~eLq 139 (162)
T 4dbg_B 104 RKVQELQSLGFGPEEGSLQALFQHGGDVSRALTELQ 139 (162)
T ss_dssp HHHHHHHHTTCCGGGTHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHhcCCchHHHHHHHHHHcCCcHHHHHHHHH
Confidence 457788888899999999999999999999998874
No 51
>4dbg_B Ring finger protein 31; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens}
Probab=60.87 E-value=6.8 Score=32.32 Aligned_cols=24 Identities=25% Similarity=0.314 Sum_probs=21.2
Q ss_pred CCCHHHHHHHHHhcCCcHHHHHhh
Q 028127 187 GVSRSKAVKALKTHNGDIVSAIME 210 (213)
Q Consensus 187 gvSRekAikALke~nGDIV~AIM~ 210 (213)
++|+++|++||..++||+=.|+-.
T Consensus 74 ~~s~~EAr~Aw~~~~Gd~~~Av~~ 97 (162)
T 4dbg_B 74 AFSCQEARRAWLDRHGNLDEAVEE 97 (162)
T ss_dssp CCCHHHHHHHHHHTTTCHHHHHHH
T ss_pred cccHHHHHHHHHHccCChHHHHHH
Confidence 479999999999999999888754
No 52
>2cos_A Serine/threonine protein kinase LATS2; UBA domain, structure genomics, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=59.40 E-value=4.7 Score=27.74 Aligned_cols=33 Identities=24% Similarity=0.327 Sum_probs=22.4
Q ss_pred CCcccHHHHHhhhCCCHHHHHHHHHhcCCcHHHH
Q 028127 174 VEPRDIDLVMTQAGVSRSKAVKALKTHNGDIVSA 207 (213)
Q Consensus 174 i~eeDIeLVM~QagvSRekAikALke~nGDIV~A 207 (213)
++..-++..+ ..||+++.|.+||+.++|-=+++
T Consensus 8 vn~qmlq~L~-eMGFd~erae~Alk~Tg~~Gle~ 40 (54)
T 2cos_A 8 VNRQMLQELV-NAGCDQEMAGRALKQTGSRSIEA 40 (54)
T ss_dssp CCHHHHHHHH-HHHCCHHHHHHHHHHHTSCCHHH
T ss_pred hHHHHHHHHH-HcCCCHHHHHHHHHHhCcccHHH
Confidence 3444443333 46999999999999998843443
No 53
>1eej_A Thiol:disulfide interchange protein; oxidoreductase, protein disulfide isomerase, protein folding, redox protein, redox-active center; HET: MES; 1.90A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1tjd_A 1jzd_A 1jzo_A 1g0t_A 2iyj_A
Probab=58.27 E-value=21 Score=28.64 Aligned_cols=43 Identities=21% Similarity=0.448 Sum_probs=27.5
Q ss_pred HHHHHHHHHHcCCe-------ecCCeeEEEEEecCceEEEecCCeEEeeCCCceEEEecce
Q 028127 69 EKKSRKAMLKLGMK-------PVTGVSRVTIKRTKNILFFISKPDVFKSPNSETYVIFGEA 122 (213)
Q Consensus 69 eKK~rKamkKLGlk-------~v~gV~rVtIrk~d~~~fVI~~PeV~k~~gs~TYvIfGea 122 (213)
+..+++.|+++|++ +++|+.+|++ ..+ -+|.++. ..|+|+|..
T Consensus 2 ~~~~~~~l~~~~~~v~~v~~~p~~Gl~~v~~--~~~--------~~y~~~d-g~~~i~G~l 51 (216)
T 1eej_A 2 DAAIQQTLAKMGIKSSDIQPAPVAGMKTVLT--NSG--------VLYITDD-GKHIIQGPM 51 (216)
T ss_dssp HHHHHHHHHHTTCCEEEEEECSSTTEEEEEE--TTE--------EEEEETT-SCEEEESCE
T ss_pred hHHHHHHHHHcCCceeeeecCCCCCcEEEEE--CCe--------EEEEcCC-CCEEEEeee
Confidence 45678889888886 4567777665 222 2355543 458888873
No 54
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=58.12 E-value=7.3 Score=30.06 Aligned_cols=25 Identities=20% Similarity=0.425 Sum_probs=19.8
Q ss_pred hhCCCHHHHHHHHHhcCCcHHHHHhh
Q 028127 185 QAGVSRSKAVKALKTHNGDIVSAIME 210 (213)
Q Consensus 185 QagvSRekAikALke~nGDIV~AIM~ 210 (213)
.-|.++..++|||+.+++| ++++|+
T Consensus 17 ~MGFp~~~~~kAl~~~g~~-~e~ame 41 (118)
T 4ae4_A 17 NMGYSYECVLRAMKAAGAN-IEQILD 41 (118)
T ss_dssp HTTCCHHHHHHHHHHHCSC-HHHHHH
T ss_pred HcCCCHHHHHHHHHHHCcC-HHHHHH
Confidence 4599999999999999886 555543
No 55
>3k6g_A Telomeric repeat-binding factor 2-interacting Pro; helix, chromosomal protein, nucleus, phosphoprotein, telomer cycle, DNA-binding, protein binding; 1.95A {Homo sapiens}
Probab=56.97 E-value=15 Score=28.51 Aligned_cols=36 Identities=17% Similarity=0.206 Sum_probs=31.2
Q ss_pred cccHHHHHhhhCCCHHHHHHHHHhcCCcHHHHHhhh
Q 028127 176 PRDIDLVMTQAGVSRSKAVKALKTHNGDIVSAIMEL 211 (213)
Q Consensus 176 eeDIeLVM~QagvSRekAikALke~nGDIV~AIM~L 211 (213)
.+=|.-.|++++..--..-+||-+|+||+-.|-.-|
T Consensus 14 ~~~i~~lMeef~~DL~sVTqAlLK~SGel~at~~fL 49 (111)
T 3k6g_A 14 IKIIRQLMEKFNLDLSTVTQAFLKNSGELEATSAFL 49 (111)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHccccHHHHHHHH
Confidence 567888999999999999999999999998775443
No 56
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens}
Probab=51.49 E-value=11 Score=37.59 Aligned_cols=36 Identities=25% Similarity=0.369 Sum_probs=30.1
Q ss_pred CCCcccHHHHHhhhCCCHHHHHHHHHhcCCcHHHHHh
Q 028127 173 GVEPRDIDLVMTQAGVSRSKAVKALKTHNGDIVSAIM 209 (213)
Q Consensus 173 gi~eeDIeLVM~QagvSRekAikALke~nGDIV~AIM 209 (213)
.++++.|..+.+ .|.++..|++||+.++||+-.||=
T Consensus 718 ~~~~e~i~~l~~-mGf~~~~a~~aL~~t~~~~eraid 753 (854)
T 3ihp_A 718 PPPEDCVTTIVS-MGFSRDQALKALRATNNSLERAVD 753 (854)
T ss_dssp -CCHHHHHHHHT-TTCCHHHHHHHHHHTTTCHHHHHH
T ss_pred CCCHHHHHHHHH-cCCCHHHHHHHHHhhcCcHHHHHH
Confidence 357778887765 699999999999999999988873
No 57
>1vdl_A Ubiquitin carboxyl-terminal hydrolase 25; UBA domain, mouse cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.5.2.1
Probab=49.57 E-value=8.2 Score=28.36 Aligned_cols=19 Identities=42% Similarity=0.496 Sum_probs=16.5
Q ss_pred HHHHHhcCCcHHHHHhhhc
Q 028127 194 VKALKTHNGDIVSAIMELT 212 (213)
Q Consensus 194 ikALke~nGDIV~AIM~Lt 212 (213)
-.||+..+|||..|+--||
T Consensus 44 ~~ALkas~Gdl~~AV~~LT 62 (80)
T 1vdl_A 44 QQALKDSNGNLELAVAFLT 62 (80)
T ss_dssp HHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHhccCCHHHHHHHHh
Confidence 3599999999999998776
No 58
>2dhy_A CUE domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=44.35 E-value=20 Score=25.22 Aligned_cols=25 Identities=16% Similarity=0.242 Sum_probs=20.0
Q ss_pred CCCHHHHHHHHHhcCCcHHHHHhhh
Q 028127 187 GVSRSKAVKALKTHNGDIVSAIMEL 211 (213)
Q Consensus 187 gvSRekAikALke~nGDIV~AIM~L 211 (213)
.++++-...+|+.++|++-.||=.|
T Consensus 31 ~lD~~vI~~vL~a~~G~vd~aId~L 55 (67)
T 2dhy_A 31 NMDYDIIECVLRANSGAVDATIDQL 55 (67)
T ss_dssp SSCHHHHHHHHHHHTSCHHHHHHHH
T ss_pred CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 7888888888888999887776544
No 59
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=42.90 E-value=36 Score=23.09 Aligned_cols=33 Identities=21% Similarity=0.264 Sum_probs=29.1
Q ss_pred HHHHHhhhCCCHHHHHHHHHhcCCcHHHHHhhh
Q 028127 179 IDLVMTQAGVSRSKAVKALKTHNGDIVSAIMEL 211 (213)
Q Consensus 179 IeLVM~QagvSRekAikALke~nGDIV~AIM~L 211 (213)
|..++.|||...+=+.+.|..++-|.=.|+-.+
T Consensus 11 v~~~s~~Tgmn~~~s~~cL~~~~Wd~~~A~~~F 43 (59)
T 1oai_A 11 LQAFSTQSGMNLEWSQKCLQDNNWDYTRSAQAF 43 (59)
T ss_dssp HHHHHHHHCCCHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 667889999999999999999999998887543
No 60
>1nri_A Hypothetical protein HI0754; structural genomics, haemophilus influ PSI, protein structure initiative, midwest center for struc genomics; 1.90A {Haemophilus influenzae} SCOP: c.80.1.3
Probab=37.23 E-value=7.1 Score=33.72 Aligned_cols=30 Identities=27% Similarity=0.474 Sum_probs=0.0
Q ss_pred HHHHHhhhCCCHHHHHHHHHhcCCcHHHHH
Q 028127 179 IDLVMTQAGVSRSKAVKALKTHNGDIVSAI 208 (213)
Q Consensus 179 IeLVM~QagvSRekAikALke~nGDIV~AI 208 (213)
+-++|-.+|||.++|++.|..++|-|-.||
T Consensus 275 ~a~~~~~~~~~~~~a~~~l~~~~~~~~~~~ 304 (306)
T 1nri_A 275 LAIMMILSTLSKSEAKVLLERHQGKLRNAL 304 (306)
T ss_dssp ------------------------------
T ss_pred HHHHHHHhCCCHHHHHHHHHHcCCcHHHHh
Confidence 346777889999999999999999988876
No 61
>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting, ligase, alternative splicing, cytoplasm, UBL conjugation, UBL conjugation pathway; 1.86A {Homo sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A*
Probab=34.72 E-value=35 Score=29.35 Aligned_cols=32 Identities=25% Similarity=0.343 Sum_probs=25.7
Q ss_pred HHHHHhhhCCCHHHHHHHHHhcCCcHHHHHhhh
Q 028127 179 IDLVMTQAGVSRSKAVKALKTHNGDIVSAIMEL 211 (213)
Q Consensus 179 IeLVM~QagvSRekAikALke~nGDIV~AIM~L 211 (213)
|+.+++. |.+|..|+.||..+|+|+-.|+=.|
T Consensus 219 v~~l~~m-gf~~~~~~~al~~~nWd~~~A~e~L 250 (253)
T 3e46_A 219 IENLCAA-GFDRNAVIVALSSKSWDVETATELL 250 (253)
T ss_dssp HHHHHHT-TCCHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHc-CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 4444443 9999999999999999998887544
No 62
>3bny_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid, farnesyl diphosphate, magnesium, cyclization, lyase; HET: FPF; 1.89A {Aspergillus terreus} PDB: 2e4o_A 2oa6_A* 3bnx_A* 3cke_A*
Probab=32.86 E-value=24 Score=29.81 Aligned_cols=24 Identities=17% Similarity=0.271 Sum_probs=20.9
Q ss_pred ccHHHHHhhhCCCHHHHHHHHHhc
Q 028127 177 RDIDLVMTQAGVSRSKAVKALKTH 200 (213)
Q Consensus 177 eDIeLVM~QagvSRekAikALke~ 200 (213)
.=|.++|.|.|||.++|+..+.+-
T Consensus 243 N~V~~~m~~~g~s~eeA~~~~~~~ 266 (320)
T 3bny_A 243 TSVQILAQEADVTAEAAKRVLFVM 266 (320)
T ss_dssp SHHHHHHHHHTCCHHHHHHHHHHH
T ss_pred chHHHHHHHcCCCHHHHHHHHHHH
Confidence 569999999999999999888654
No 63
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=31.97 E-value=21 Score=32.38 Aligned_cols=34 Identities=24% Similarity=0.316 Sum_probs=26.8
Q ss_pred ccHHHHHhhhCCCHHHHHHHHHhcCCcHHHHHhhh
Q 028127 177 RDIDLVMTQAGVSRSKAVKALKTHNGDIVSAIMEL 211 (213)
Q Consensus 177 eDIeLVM~QagvSRekAikALke~nGDIV~AIM~L 211 (213)
+-|.-+|+ .|.+|+.+++||+.++||+=.|+=-|
T Consensus 170 ~~i~~l~~-MGf~~~~~~~AL~a~~nn~~~A~e~L 203 (368)
T 1oqy_A 170 TMLTEIMS-MGYERERVVAALRASYNNPHRAVEYL 203 (368)
T ss_dssp HHHHHHHT-TTCCSHHHHHHHHHSCSSTTHHHHTT
T ss_pred HHHHHHHH-cCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 34555553 59999999999999999997776544
No 64
>2lva_A Ubiquitin carboxyl-terminal hydrolase 28; UIM, ubiquitin interacting motif, UBA domain, NESG, northeas structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=36.47 E-value=11 Score=30.05 Aligned_cols=19 Identities=53% Similarity=0.637 Sum_probs=16.7
Q ss_pred HHHHHhcCCcHHHHHhhhc
Q 028127 194 VKALKTHNGDIVSAIMELT 212 (213)
Q Consensus 194 ikALke~nGDIV~AIM~Lt 212 (213)
.+|||.+||||..|+--||
T Consensus 38 ~~ALkAsnGdl~qAV~~LT 56 (129)
T 2lva_A 38 HEALKASNGDITQAVSLLT 56 (129)
Confidence 5699999999999987776
No 65
>2jp7_A MRNA export factor MEX67; solution MEX67, UBA, translation; NMR {Saccharomyces cerevisiae} PDB: 2khh_A
Probab=29.39 E-value=58 Score=22.02 Aligned_cols=33 Identities=9% Similarity=0.063 Sum_probs=28.6
Q ss_pred HHHHHhhhCCCHHHHHHHHHhcCCcHHHHHhhh
Q 028127 179 IDLVMTQAGVSRSKAVKALKTHNGDIVSAIMEL 211 (213)
Q Consensus 179 IeLVM~QagvSRekAikALke~nGDIV~AIM~L 211 (213)
|..++.|||...+=+.+.|..|+=|.=.||-.+
T Consensus 10 v~~~s~~T~Mn~e~S~~cL~~n~Wd~~~A~~~F 42 (57)
T 2jp7_A 10 LNKLHLETKLNAEYTFMLAEQSNWNYEVAIKGF 42 (57)
T ss_dssp HHHHHHHHCSCHHHHHHHHHHTTTCSHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 567889999999999999999999988887543
No 66
>1di1_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid biosynthesis, lyase; 2.50A {Penicillium roqueforti} SCOP: a.128.1.4 PDB: 1dgp_A
Probab=29.36 E-value=30 Score=28.75 Aligned_cols=24 Identities=4% Similarity=0.138 Sum_probs=21.0
Q ss_pred ccHHHHHhhhCCCHHHHHHHHHhc
Q 028127 177 RDIDLVMTQAGVSRSKAVKALKTH 200 (213)
Q Consensus 177 eDIeLVM~QagvSRekAikALke~ 200 (213)
.=|.++|.|.|||.++|+..+.+-
T Consensus 229 n~V~~~m~~~g~s~eeA~~~~~~~ 252 (300)
T 1di1_A 229 SAVKVLAEESKLGIPATKRVLWSM 252 (300)
T ss_dssp CHHHHHHHHHTCCHHHHHHHHHHH
T ss_pred hhHHHHHHHcCCCHHHHHHHHHHH
Confidence 579999999999999999887653
No 67
>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus}
Probab=27.32 E-value=52 Score=22.84 Aligned_cols=22 Identities=32% Similarity=0.459 Sum_probs=20.8
Q ss_pred cHHHHHhhhCCCHHHHHHHHHh
Q 028127 178 DIDLVMTQAGVSRSKAVKALKT 199 (213)
Q Consensus 178 DIeLVM~QagvSRekAikALke 199 (213)
||..+.+.-||||++...+|+.
T Consensus 27 dI~~~a~kygV~kdeV~~~Lrr 48 (59)
T 2xvc_A 27 DIEHFSKVYGVEKQEVVKLLEA 48 (59)
T ss_dssp EHHHHHHHHCCCHHHHHHHHHH
T ss_pred eHHHHHHHhCCCHHHHHHHHHH
Confidence 8999999999999999999985
No 68
>1tte_A Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiquitin-dependent degradation, ligase; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1 d.20.1.1
Probab=26.33 E-value=49 Score=27.65 Aligned_cols=32 Identities=22% Similarity=0.293 Sum_probs=26.0
Q ss_pred CCCCcccHHHHHhhhCCCHHHHHHHHHhcCCcH
Q 028127 172 TGVEPRDIDLVMTQAGVSRSKAVKALKTHNGDI 204 (213)
Q Consensus 172 ~gi~eeDIeLVM~QagvSRekAikALke~nGDI 204 (213)
.|++.+-|+.+++ .|.++.+|+.||..+++|-
T Consensus 166 ~g~~~~~v~~~~~-mg~~~~~~~~al~~~~~~~ 197 (215)
T 1tte_A 166 YGIDHDLIDEFES-QGFEKDKIVEVLRRLGVKS 197 (215)
T ss_dssp CCCSHHHHHHHHH-HTCCHHHHHHHHHHSCCSS
T ss_pred ccccHHHHHHHHH-cCCCHHHHHHHHHHcCCCc
Confidence 4677777777655 4999999999999999883
No 69
>1ps1_A Pentalenene synthase; antibiotic biosynthesis, sesquiterpene cyclase, lyase; 2.60A {Streptomyces SP} SCOP: a.128.1.4 PDB: 1hm7_A 1hm4_A
Probab=25.74 E-value=45 Score=28.29 Aligned_cols=25 Identities=16% Similarity=0.324 Sum_probs=21.2
Q ss_pred CcccHHHHHhhhCCCHHHHHHHHHh
Q 028127 175 EPRDIDLVMTQAGVSRSKAVKALKT 199 (213)
Q Consensus 175 ~eeDIeLVM~QagvSRekAikALke 199 (213)
-..=|.++|.|.|||.++|+..+.+
T Consensus 233 ~~n~V~~~m~~~g~s~eeA~~~v~~ 257 (337)
T 1ps1_A 233 QNNMVMILRREHGWSKSRSVSHMQN 257 (337)
T ss_dssp CCSHHHHHHHHHCCCHHHHHHHHHH
T ss_pred cchHHHHHHHHcCCCHHHHHHHHHH
Confidence 3457899999999999999988755
No 70
>2fpn_A YWMB; structural genomocs, domain swappin structural genomics, PSI, protein structure initiative, MID center for structural genomics, MCSG; 2.49A {Bacillus subtilis} SCOP: d.129.10.1
Probab=24.46 E-value=35 Score=28.80 Aligned_cols=54 Identities=15% Similarity=0.191 Sum_probs=26.8
Q ss_pred HHHHHHHHHHcCCeecCCeeEEEEE-----ec--CceEEEecCC----eE---EeeCCCceEEEeccee
Q 028127 69 EKKSRKAMLKLGMKPVTGVSRVTIK-----RT--KNILFFISKP----DV---FKSPNSETYVIFGEAK 123 (213)
Q Consensus 69 eKK~rKamkKLGlk~v~gV~rVtIr-----k~--d~~~fVI~~P----eV---~k~~gs~TYvIfGeak 123 (213)
.++++++|++|+.++|+++...++. .+ ++. +-+..- +| |..-+..||+.+|.|=
T Consensus 144 ~~~~~~~l~~l~A~~vE~~~e~~~vSiSaYs~~~~~~-i~~~~~k~NlqvAlR~~~~~~kT~I~iGTPI 211 (216)
T 2fpn_A 144 QKKANQLLNEFQARSVEHVVEPNFVSISAFTDEWEEY-IMTSKHKMNLQIALRSAGMGGKHTVTVGTPI 211 (216)
T ss_dssp HHHHHHHHHHHC---CCCCCBTTEEEEEECCTTSSCC-EEETTEEECEEEEEEC------CEEEEESSC
T ss_pred HHHHHHHHHHcCCeeeeeeccccEEEEEEEChhhhhH-hhcCCeEEEEEEEEEecCCCCcEEEEEecce
Confidence 6889999999999998877543322 11 111 122221 22 2244777999999873
No 71
>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1
Probab=24.13 E-value=62 Score=24.70 Aligned_cols=33 Identities=18% Similarity=0.239 Sum_probs=29.9
Q ss_pred cCCCCcccHHHHHhhhCCCHHHHHHHHHhcCCc
Q 028127 171 ETGVEPRDIDLVMTQAGVSRSKAVKALKTHNGD 203 (213)
Q Consensus 171 e~gi~eeDIeLVM~QagvSRekAikALke~nGD 203 (213)
-+|++++.+......++-.-++|+..|.+..+|
T Consensus 49 mtG~seeeAr~AL~~~ngDl~~AI~~Lleg~~~ 81 (104)
T 1wj7_A 49 ITGKNQDECVIALHDCNGDVNRAINVLLEGNPD 81 (104)
T ss_dssp HTCCCHHHHHHHHHHHTSCHHHHHHHHHTCSSS
T ss_pred hhCCCHHHHHHHHHHcCCCHHHHHHHHHhCCCc
Confidence 459999999999999999999999999987654
No 72
>4ham_A LMO2241 protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, winged helix-turn-helix, four helix bundle; 1.91A {Listeria monocytogenes}
Probab=23.38 E-value=50 Score=24.67 Aligned_cols=20 Identities=20% Similarity=0.262 Sum_probs=17.3
Q ss_pred HHHHhhhCCCHHHHHHHHHh
Q 028127 180 DLVMTQAGVSRSKAVKALKT 199 (213)
Q Consensus 180 eLVM~QagvSRekAikALke 199 (213)
.-++++.||||.-.++||+.
T Consensus 42 r~La~~~gVSr~tVReAl~~ 61 (134)
T 4ham_A 42 REFASRIGVNPNTVSKAYQE 61 (134)
T ss_dssp HHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHH
Confidence 45899999999999999875
No 73
>3tqn_A Transcriptional regulator, GNTR family; regulatory functions; 2.80A {Coxiella burnetii}
Probab=22.13 E-value=67 Score=23.32 Aligned_cols=22 Identities=18% Similarity=0.208 Sum_probs=18.4
Q ss_pred cHHHHHhhhCCCHHHHHHHHHh
Q 028127 178 DIDLVMTQAGVSRSKAVKALKT 199 (213)
Q Consensus 178 DIeLVM~QagvSRekAikALke 199 (213)
-+.-++.+.||||.-.++||..
T Consensus 35 s~~~La~~~~vSr~tvr~al~~ 56 (113)
T 3tqn_A 35 SIRKISTEYQINPLTVSKAYQS 56 (113)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHHHH
Confidence 3567899999999998888864
No 74
>1t3b_A Thiol:disulfide interchange protein DSBC; oxidoreductase, protein disulfide isomerase, protein folding, redox protein; 2.50A {Haemophilus influenzae} SCOP: c.47.1.9 d.17.3.1
Probab=21.51 E-value=47 Score=26.53 Aligned_cols=41 Identities=12% Similarity=0.383 Sum_probs=23.9
Q ss_pred HHHHHHHHcCCe-------ecCCeeEEEEEecCceEEEecCCeEEeeCCCceEEEecce
Q 028127 71 KSRKAMLKLGMK-------PVTGVSRVTIKRTKNILFFISKPDVFKSPNSETYVIFGEA 122 (213)
Q Consensus 71 K~rKamkKLGlk-------~v~gV~rVtIrk~d~~~fVI~~PeV~k~~gs~TYvIfGea 122 (213)
.+++.|.++|++ +++|+-+|++ ...-+|.++ ...|+|+|..
T Consensus 4 ~~~~~l~~~~~~v~~v~~~~~~Gl~~v~~----------~~~~~y~~~-dg~~~i~G~l 51 (211)
T 1t3b_A 4 AIKRKLQSFNISNIVIKSSPISGIKTAVT----------DQGILYVSE-DGKYLFEGKL 51 (211)
T ss_dssp TTHHHHHTTTCCSCCCCBCSSTTEECCEE----------TTEECEEES-SSSCEECSCC
T ss_pred HHHHHHHHcCCceeeeecCCCCCeEEEEE----------CCEEEEEcC-CCCEEEEeeE
Confidence 356778888876 3445555544 222335554 3468888873
No 75
>2qsf_X RAD23, UV excision repair protein RAD23; alpha-beta structure, beta hairpin, transglutaminase fold, DNA-damage recognition, DNA repair; HET: DNA; 2.35A {Saccharomyces cerevisiae} PDB: 2qsg_X* 2qsh_X* 1x3z_B* 1x3w_B* 3esw_B*
Probab=21.34 E-value=99 Score=25.30 Aligned_cols=31 Identities=13% Similarity=0.162 Sum_probs=24.9
Q ss_pred ccHHHHHhhhCCCHHHHHHHHHhcCCcHHHHH
Q 028127 177 RDIDLVMTQAGVSRSKAVKALKTHNGDIVSAI 208 (213)
Q Consensus 177 eDIeLVM~QagvSRekAikALke~nGDIV~AI 208 (213)
+-|+-+++- |.+|..||+||..+++|.--|.
T Consensus 132 eaI~rL~~m-GF~r~~viqA~~ac~knee~Aa 162 (171)
T 2qsf_X 132 QAISRLCEL-GFERDLVIQVYFACDKNEEAAA 162 (171)
T ss_dssp HHHHHHHTT-TCCHHHHHHHHHHTTTCHHHHH
T ss_pred HHHHHHHHc-CCCHHHHHHHHHHcCCCHHHHH
Confidence 347666654 9999999999999999985554
No 76
>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}
Probab=20.76 E-value=21 Score=31.85 Aligned_cols=7 Identities=14% Similarity=0.197 Sum_probs=0.0
Q ss_pred ceecCCC
Q 028127 27 VVEDVKD 33 (213)
Q Consensus 27 ~~~~~~~ 33 (213)
.+++++.
T Consensus 302 ~~~~~~~ 308 (335)
T 4fp9_B 302 EEDNDED 308 (335)
T ss_dssp -------
T ss_pred cccccCc
Confidence 3333333
No 77
>1cw0_A Protein (DNA mismatch endonuclease); protein-DNA complex, intercalation, zinc, hydrolase/DNA; HET: DNA; 2.30A {Escherichia coli} SCOP: c.52.1.15
Probab=20.41 E-value=63 Score=25.95 Aligned_cols=20 Identities=15% Similarity=0.297 Sum_probs=17.9
Q ss_pred cccCccHHHHHHHHHHcCCe
Q 028127 63 SKQSRSEKKSRKAMLKLGMK 82 (213)
Q Consensus 63 ~k~sR~eKK~rKamkKLGlk 82 (213)
++.++.|..++++|..+|++
T Consensus 18 ~~~T~pE~~lr~~L~~~G~r 37 (155)
T 1cw0_A 18 TRDTAIEKRLASLLTGQGLA 37 (155)
T ss_dssp SSSCHHHHHHHHHHHHTTCC
T ss_pred cCCCcHHHHHHHHHHHCCCe
Confidence 56788899999999999997
Done!