BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028128
(213 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O82352|RTNLE_ARATH Reticulon-like protein B5 OS=Arabidopsis thaliana GN=RTNLB5 PE=1
SV=1
Length = 255
Score = 230 bits (586), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 127/204 (62%), Positives = 150/204 (73%), Gaps = 9/204 (4%)
Query: 1 MAEREENPA---EPPMEKVSEKIHDHDSSSSSSSDSDNEEPAAQSSVKADIYRLFGRERP 57
MAE E E MEK+SEKIH HDSSSSS S+ E+P + S+VKA IYR+FGRE+P
Sbjct: 1 MAEEIEKSVPTEESLMEKISEKIHHHDSSSSSESEY--EKPDSPSAVKAKIYRMFGREKP 58
Query: 58 VHQVFGGGKPADVFLWRNKKISAGVLGGATAIWVLFELFEYHLLTLVCHTLILALAILFL 117
VH+V GGGKPADVFLWR+KK+S VLG ATAIWVLFEL EYHLL+L+CH ILAL LFL
Sbjct: 59 VHKVLGGGKPADVFLWRDKKLSGAVLGVATAIWVLFELVEYHLLSLLCHISILALGGLFL 118
Query: 118 WANAHTFIKKAPPCIPEVHLPEEPFLQVASAFRIELNHAFAVLRSIASGRDLKSFLMVCA 177
W+NAHT I K P IPE+H+PEE FL VAS+ R ELN AF +LRSIA GRDLK FLMV
Sbjct: 119 WSNAHTLINKTSPQIPEIHVPEEAFLVVASSLRNELNQAFVILRSIALGRDLKKFLMVVV 178
Query: 178 --FSIHLICELFSFLLKHELYCCY 199
+ I ++ F+FL +Y C+
Sbjct: 179 GLWIISVVGNWFNFLTL--VYICF 200
>sp|Q9SH59|RTNLC_ARATH Reticulon-like protein B3 OS=Arabidopsis thaliana GN=RTNLB3 PE=1
SV=1
Length = 255
Score = 214 bits (546), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 117/177 (66%), Positives = 140/177 (79%), Gaps = 3/177 (1%)
Query: 1 MAEREENPAEPPMEKVSEKIHDHDSSSSSSSDSDNEEPAAQSSVKADIYRLFGRERPVHQ 60
MAE E E MEK+SEKIH HD SSSSSSDSD+++ +A S+K IYRLFGRE+P+H+
Sbjct: 1 MAE-EHKHEESIMEKISEKIHGHDDSSSSSSDSDDDKNSA--SLKTKIYRLFGREQPLHK 57
Query: 61 VFGGGKPADVFLWRNKKISAGVLGGATAIWVLFELFEYHLLTLVCHTLILALAILFLWAN 120
+FGGGKPAD+FLWRNKK+S GVLG AT W+LFEL EY+LLTL H ILALA+LFLW++
Sbjct: 58 LFGGGKPADIFLWRNKKVSGGVLGAATVSWILFELLEYNLLTLFGHISILALAVLFLWSS 117
Query: 121 AHTFIKKAPPCIPEVHLPEEPFLQVASAFRIELNHAFAVLRSIASGRDLKSFLMVCA 177
A TFI K+P IPEVH+PE+ LQ+AS RIE+N F VLR IASGRDLK FL+V A
Sbjct: 118 ASTFIHKSPLHIPEVHIPEDVVLQLASGLRIEINRGFTVLRDIASGRDLKKFLLVIA 174
>sp|Q6DBN4|RTNLF_ARATH Reticulon-like protein B6 OS=Arabidopsis thaliana GN=RTNLB6 PE=1
SV=1
Length = 253
Score = 211 bits (536), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 120/199 (60%), Positives = 148/199 (74%), Gaps = 6/199 (3%)
Query: 3 EREENPAEPPMEKVSEKIHDHDSSSSSSSDSDNEEPAAQSSVKADIYRLFGRERPVHQVF 62
E+ + E MEK+++KIHD SSSSSDS++E+P + S++KA IYRLFGRE+PVH+V
Sbjct: 6 EKSMHKEESLMEKIADKIHD--HDSSSSSDSEHEKPESPSALKAKIYRLFGREKPVHKVL 63
Query: 63 GGGKPADVFLWRNKKISAGVLGGATAIWVLFELFEYHLLTLVCHTLILALAILFLWANAH 122
GGG PADVFLWR+KK+SA VLG ATAIWVLFEL EYH L+LVCH LI ALA LFL +NAH
Sbjct: 64 GGGLPADVFLWRDKKLSASVLGVATAIWVLFELVEYHFLSLVCHILIFALAALFLLSNAH 123
Query: 123 TFIKKAPPCIPEVHLPEEPFLQVASAFRIELNHAFAVLRSIASGRDLKSFLMVC--AFSI 180
F+ K PP IPE+H+ EE FL + SA R ELN AF +LRSIA GRDLK FLMV + I
Sbjct: 124 AFMNKTPPKIPEIHIKEEHFLMIVSALRNELNQAFVILRSIALGRDLKKFLMVVFGLWII 183
Query: 181 HLICELFSFLLKHELYCCY 199
++ F+FL +Y C+
Sbjct: 184 SVVGNWFNFL--TLVYICF 200
>sp|Q9SUR3|RTNLA_ARATH Reticulon-like protein B1 OS=Arabidopsis thaliana GN=RTNLB1 PE=1
SV=1
Length = 275
Score = 209 bits (531), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 94/145 (64%), Positives = 118/145 (81%), Gaps = 2/145 (1%)
Query: 48 IYRLFGRERPVHQVFGGGKPADVFLWRNKKISAGVLGGATAIWVLFELFEYHLLTLVCHT 107
+YRLFGRE+PVH+V GGGKPAD+F+W+NKK+S GVLGGATA WV+FEL EYHLLTL+CH
Sbjct: 70 VYRLFGREQPVHKVLGGGKPADIFMWKNKKMSGGVLGGATAAWVVFELMEYHLLTLLCHV 129
Query: 108 LILALAILFLWANAHTFIKKAPPCIPEVHLPEEPFLQVASAFRIELNHAFAVLRSIASGR 167
+I+ LA+LFLW+NA FI K+PP IPEVH+PEEP LQ+AS RIE+N F+ LR IASGR
Sbjct: 130 MIVVLAVLFLWSNATMFINKSPPKIPEVHIPEEPILQLASGLRIEINRGFSSLREIASGR 189
Query: 168 DLKSFLMVCA--FSIHLICELFSFL 190
DLK FL+ A + + ++ F+FL
Sbjct: 190 DLKKFLIAIAGLWVLSILGGCFNFL 214
>sp|Q9SUT9|RTNLB_ARATH Reticulon-like protein B2 OS=Arabidopsis thaliana GN=RTNLB2 PE=1
SV=1
Length = 271
Score = 209 bits (531), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 111/187 (59%), Positives = 136/187 (72%), Gaps = 6/187 (3%)
Query: 10 EPPMEKVSEKIHDHDSSSSSSSDSDNEEPAAQSSVKAD----IYRLFGRERPVHQVFGGG 65
E MEK+SEKIH SSSSSS D E + SS +YRLFGRERPVH+V GGG
Sbjct: 24 ESLMEKLSEKIHHKGDSSSSSSSDDENEKKSSSSSPKSLKSKVYRLFGRERPVHKVLGGG 83
Query: 66 KPADVFLWRNKKISAGVLGGATAIWVLFELFEYHLLTLVCHTLILALAILFLWANAHTFI 125
KPAD+F+W++KK+S GV GGAT WVLFEL EYHLLTL+CH +I+ALA+LFLW+NA FI
Sbjct: 84 KPADIFMWKDKKMSGGVFGGATVAWVLFELMEYHLLTLLCHVMIVALAVLFLWSNATMFI 143
Query: 126 KKAPPCIPEVHLPEEPFLQVASAFRIELNHAFAVLRSIASGRDLKSFLMVCA--FSIHLI 183
K+PP IPEVH+PEEP LQ+AS RIE+N + LR IASGRD+K FL A + + ++
Sbjct: 144 HKSPPKIPEVHIPEEPLLQLASGLRIEINRGISSLREIASGRDIKKFLSAIAGLWVLSIL 203
Query: 184 CELFSFL 190
+SFL
Sbjct: 204 GGCYSFL 210
>sp|Q9FFS0|RTNLD_ARATH Reticulon-like protein B4 OS=Arabidopsis thaliana GN=RTNLB4 PE=1
SV=1
Length = 257
Score = 200 bits (509), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 106/185 (57%), Positives = 134/185 (72%), Gaps = 4/185 (2%)
Query: 10 EPPMEKVSEKIHDHDSSSSSSSDSDNEEPAAQSSVKAD--IYRLFGRERPVHQVFGGGKP 67
E +EK+ EKIH H SSS S D+++ + SS IYRLFGRE+PVH+V GGGKP
Sbjct: 9 ESILEKIVEKIHGHGDSSSLSDSDDDKKSTSSSSSSFKSKIYRLFGREKPVHKVLGGGKP 68
Query: 68 ADVFLWRNKKISAGVLGGATAIWVLFELFEYHLLTLVCHTLILALAILFLWANAHTFIKK 127
AD+FLWRNKK+S GVLG TA WVLFELFEYHLL +CH I ALA LFLW+NA TFI K
Sbjct: 69 ADIFLWRNKKVSGGVLGAVTASWVLFELFEYHLLAFLCHFAIFALAALFLWSNACTFIHK 128
Query: 128 APPCIPEVHLPEEPFLQVASAFRIELNHAFAVLRSIASGRDLKSFLMVCA--FSIHLICE 185
+ P IPEVH+PE+P LQ+ S RIE+N +LR+IASG+D+K F++V A + + +I
Sbjct: 129 STPHIPEVHIPEDPILQLVSGLRIEINRGLTLLRNIASGKDVKKFILVIAGLWVLSIIGS 188
Query: 186 LFSFL 190
++FL
Sbjct: 189 CYNFL 193
>sp|Q9M145|RTNLG_ARATH Reticulon-like protein B7 OS=Arabidopsis thaliana GN=RTNLB7 PE=3
SV=2
Length = 244
Score = 145 bits (367), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 80/166 (48%), Positives = 109/166 (65%), Gaps = 7/166 (4%)
Query: 36 EEPAAQSSVKADIYRLFGRERPVHQVFGGGKPADVFLWRNKKISAGVLGGATAIWVLFEL 95
E+P + + A IYR+FGRERP+H V GGGKPADV LWR+KK++ G+L T IW+LF
Sbjct: 39 EKPDSPVPINAPIYRMFGRERPIHMVLGGGKPADVLLWRDKKVTLGLLSAVTVIWLLFGF 98
Query: 96 FEYHLLTLVCHTLILALAILFLWANAHTFIKKAPPCIPEVHLPEEPFLQVASAFRIELNH 155
LLT +C IL L + FLW+NA + K+P + ++++PE+P LQ ASA ELN
Sbjct: 99 GGRRLLTSLCRGSILFLLLSFLWSNA---LNKSPENMMDIYIPEKPLLQAASAMTFELNC 155
Query: 156 AFAVLRSIASGRDLKSFLM--VCAFSIHLICELFSFLLKHELYCCY 199
AFA LRSIA RD+K+F+M + + + +I FSFL LY C+
Sbjct: 156 AFATLRSIALERDIKNFVMAVIGLWLVSVIGNWFSFL--SLLYICF 199
>sp|Q9SS37|RTNLH_ARATH Reticulon-like protein B8 OS=Arabidopsis thaliana GN=RTNLB8 PE=1
SV=1
Length = 247
Score = 138 bits (347), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 68/167 (40%), Positives = 100/167 (59%)
Query: 8 PAEPPMEKVSEKIHDHDSSSSSSSDSDNEEPAAQSSVKADIYRLFGRERPVHQVFGGGKP 67
P + +E V + D+ + + + + + SV + RLF R++P+H V GGGK
Sbjct: 2 PDKNIVEDVIGDLVDNFTETVQKNKHGSSFFEQEDSVSSRFNRLFDRQKPIHHVLGGGKS 61
Query: 68 ADVFLWRNKKISAGVLGGATAIWVLFELFEYHLLTLVCHTLILALAILFLWANAHTFIKK 127
ADV LWRNKKISA VL GATAIWVLFE +H L+LVC+ L+L + F+W+NA F+ +
Sbjct: 62 ADVLLWRNKKISASVLMGATAIWVLFEWINFHFLSLVCYALLLGMIAQFVWSNASGFLNR 121
Query: 128 APPCIPEVHLPEEPFLQVASAFRIELNHAFAVLRSIASGRDLKSFLM 174
+ +P + LP++ F +V A E+N L+ +A +LK FLM
Sbjct: 122 SQSRVPRLVLPKDFFAEVGVAVGKEVNRGLLFLQDLACKGNLKQFLM 168
>sp|Q9LJQ5|RTNLI_ARATH Reticulon-like protein B9 OS=Arabidopsis thaliana GN=RTNLB9 PE=2
SV=1
Length = 225
Score = 123 bits (309), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 59/166 (35%), Positives = 96/166 (57%), Gaps = 8/166 (4%)
Query: 27 SSSSSDSDNEEPAAQSSVKADIYRLFGRERPVHQVFGGGKPADVFLWRNKKISAGVLGGA 86
+ SSSDS++E +++ +LF R+R +H +FGGGK AD+ LWR KI+A ++ G
Sbjct: 5 TGSSSDSEDERTIHKTT------KLFTRQRSIHSIFGGGKVADILLWREPKIAATLVIGV 58
Query: 87 TAIWVLFELFEYHLLTLVCHTLILALAILFLWANAHTFIKKAPPCIPEVHLPEEPFLQVA 146
+ +W L E+ EY+ +TL+CH + ++ F+W+ A F+ P IPEV L E F Q+A
Sbjct: 59 SILWFLMEVVEYNFITLICHASMTSMLFFFIWSTASDFLNWERPLIPEVVLDESSFKQLA 118
Query: 147 SAFRIELNHAFAVLRSIASGRDLKSFLM--VCAFSIHLICELFSFL 190
+F + N L +A GRD F + + + + +I F+F+
Sbjct: 119 RSFHVRFNQILTKLLDVACGRDPPLFFLTTISLYIVSIIGTYFNFV 164
>sp|Q8GYH6|RTNLP_ARATH Reticulon-like protein B16 OS=Arabidopsis thaliana GN=RTNLB16 PE=2
SV=1
Length = 226
Score = 96.7 bits (239), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 53/153 (34%), Positives = 76/153 (49%), Gaps = 4/153 (2%)
Query: 24 DSSSSSSSDSDNEEPAAQSSVKADIYRLFGRERPVHQVFGGGKPADVFLWRNKKISAGVL 83
DS S D D SS YRL GR+ VHQ GGGK AD+ LWR + +S GV+
Sbjct: 2 DSLSDIDGDFDGRNEGGSSSD----YRLLGRQITVHQFMGGGKAADLLLWRRRHLSLGVI 57
Query: 84 GGATAIWVLFELFEYHLLTLVCHTLILALAILFLWANAHTFIKKAPPCIPEVHLPEEPFL 143
+T W++FE L++ L++ + I F+ A F + +PE+ L EE
Sbjct: 58 IISTVAWLIFEFSGLPFLSVSSDVLLIVIMISFVHARVSAFRNRQLHSLPELVLSEEMVN 117
Query: 144 QVASAFRIELNHAFAVLRSIASGRDLKSFLMVC 176
A++FRI+LNH + + G D + F V
Sbjct: 118 SAAASFRIKLNHLLVMAHDVTVGNDFRLFFKVV 150
>sp|Q6NPD8|RTNLJ_ARATH Reticulon-like protein B10 OS=Arabidopsis thaliana GN=RTNLB10 PE=2
SV=1
Length = 201
Score = 84.7 bits (208), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 45/138 (32%), Positives = 69/138 (50%), Gaps = 2/138 (1%)
Query: 55 ERPVHQVFGGGKPADVFLWRNKKISAGVLGGATAIWVLFELFEYHLLTLVCHTLILALAI 114
E VHQ G AD+ +W+N++ +LG T +W LFE Y V +T +L++ I
Sbjct: 2 EESVHQSIRFGSVADLIMWKNRRGGFLLLGSTTLLWFLFEKCGYSFFPFVVNTQLLSVVI 61
Query: 115 LFLWANAHTFIKKAPPCIPEVHLPEEPFLQVASAFRIELNHAFAVLRSIASGRDLKSFLM 174
LFLWA + + P +P + + EE VA A R+ +N AV R I GR+ K
Sbjct: 62 LFLWAKSAILFNRPMPQLPNLEITEEFVFMVADAIRVWINTVLAVAREIYVGRNAKQLFR 121
Query: 175 VCA--FSIHLICELFSFL 190
V +++ + +FL
Sbjct: 122 VSVVLWTVSFVGNFLNFL 139
>sp|Q9LT71|RTNLK_ARATH Reticulon-like protein B11 OS=Arabidopsis thaliana GN=RTNLB11 PE=2
SV=1
Length = 200
Score = 84.0 bits (206), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 41/118 (34%), Positives = 64/118 (54%)
Query: 59 HQVFGGGKPADVFLWRNKKISAGVLGGATAIWVLFELFEYHLLTLVCHTLILALAILFLW 118
HQ G G AD+ LWRN+ + +L +T W LFE Y+LL+ V + L+L +AI FLW
Sbjct: 14 HQSLGAGSVADLLLWRNRTGAVILLISSTGFWFLFERAGYNLLSFVSNVLLLLVAIFFLW 73
Query: 119 ANAHTFIKKAPPCIPEVHLPEEPFLQVASAFRIELNHAFAVLRSIASGRDLKSFLMVC 176
A + T + + P +P + +PEE + A R+ +N+ ++ I R+ L V
Sbjct: 74 AKSATVLNRPLPPVPNMEIPEEFANKAADDLRVWINYVLSIASDITIARNPIRLLQVS 131
>sp|Q9M392|RTNLL_ARATH Reticulon-like protein B12 OS=Arabidopsis thaliana GN=RTNLB12 PE=2
SV=1
Length = 203
Score = 79.0 bits (193), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 52/142 (36%), Positives = 79/142 (55%), Gaps = 2/142 (1%)
Query: 50 RLFGRERPVHQVFGGGKPADVFLWRNKKISAGVLGGATAIWVLFELFEYHLLTLVCHTLI 109
+LF R+R +H++ GGG ADV LWR K +S G++ A W++FE F Y + TL+ L+
Sbjct: 7 KLFNRDRTIHEILGGGIVADVMLWRKKNVSVGIVTVTIASWMVFEAFAYTIFTLISSVLL 66
Query: 110 LALAILFLWANAHTFIKKAPPCIPEVHLPEEPFLQVASAFRIELNHAFAVLRSIASGRD- 168
L L+ILFLW+ + + + + P +PE + E + + RI +N V IA RD
Sbjct: 67 LLLSILFLWSKSASILNRPSPPLPEFQISEAMAEEASIWLRIHVNKLLQVSHDIAMARDS 126
Query: 169 -LKSFLMVCAFSIHLICELFSF 189
L + + V F + LI L F
Sbjct: 127 ELYTKVAVSLFLLSLIGSLMDF 148
>sp|A2RVT6|RTNLN_ARATH Reticulon-like protein B14 OS=Arabidopsis thaliana GN=RTNLB14 PE=2
SV=2
Length = 215
Score = 65.5 bits (158), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 41/121 (33%), Positives = 66/121 (54%), Gaps = 7/121 (5%)
Query: 63 GGGKPADVFLWRNKKISAGVLGGATAIWVLFELFEYHLLTLVCHTLILALAILFLWA--N 120
GGG+ AD+ W+NKK S +LG T IW LFE+ EY +T +C L+L + I +W+
Sbjct: 27 GGGRFADIMFWKNKKESGTILGVFTLIWFLFEVVEYPFITFLCQILLLFIFIFLIWSYIG 86
Query: 121 AHTFIKKAPPCIPEVHLPEEPFLQVASAFRIELNHAFAVLRSIASGRDLK-SFLMVCAFS 179
+ I+ PP I ++ + E + + + ++N L I+SG+D + FL V +
Sbjct: 87 SSQLIQSKPPSINDLRISESNWRFLFN----KINWFIIKLYDISSGKDFRLLFLAVVSLW 142
Query: 180 I 180
I
Sbjct: 143 I 143
>sp|Q9ZU43|RTNLO_ARATH Reticulon-like protein B15 OS=Arabidopsis thaliana GN=RTNLB15 PE=2
SV=2
Length = 191
Score = 53.9 bits (128), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 50/143 (34%), Positives = 74/143 (51%), Gaps = 7/143 (4%)
Query: 58 VHQVFGGGKPADVFLWRNKKISAGVLGGATAIWVLFELFEYHLLTLVCHTLILALAILFL 117
V Q+ G G AD+ LW++K S L AT W L E E L+ L+C L+L + ILFL
Sbjct: 4 VDQILGDGAVADLCLWKDKINSGITLVMATLFWFLLEFMEARLVPLLCSILLLLMLILFL 63
Query: 118 WAN-AHTFIKKAPPCIPEVHLPEEPFLQVASAFRIELNHAFAVLRSIASGRDLKSFLMVC 176
WA F + PP E++ P+ P + + F + H +L IA G+D K+FL
Sbjct: 64 WAKFGEVFFTRRPPTPEELNQPDSP---LKALFSMMEGH-LLMLYEIAYGKDNKTFLKTI 119
Query: 177 AFSIHLICELFSFL-LKHELYCC 198
+ + +I + S++ L LY C
Sbjct: 120 LY-VAIIYNIGSYISLLTILYIC 141
>sp|O64837|RTNLM_ARATH Reticulon-like protein B13 OS=Arabidopsis thaliana GN=RTNLB13 PE=2
SV=1
Length = 206
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 45/83 (54%)
Query: 69 DVFLWRNKKISAGVLGGATAIWVLFELFEYHLLTLVCHTLILALAILFLWANAHTFIKKA 128
D++LWR KK++ L +T+ W+L + + +T+V I ++++FLW + + K
Sbjct: 18 DIYLWRRKKLAFSTLLVSTSTWILLSFYGFTTITIVSWIGIAVVSMIFLWGSLLRLLSKV 77
Query: 129 PPCIPEVHLPEEPFLQVASAFRI 151
P + + + EE ++ + R+
Sbjct: 78 EPELSGLEVSEEFVVETVRSCRM 100
>sp|Q67ZE1|HSDD2_ARATH 3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 2
OS=Arabidopsis thaliana GN=3BETAHSD/D2 PE=2 SV=2
Length = 564
Score = 35.8 bits (81), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 43/180 (23%), Positives = 68/180 (37%), Gaps = 37/180 (20%)
Query: 8 PAEPPMEKVSEKIHDHDSSSSSSSDSDNEEPAAQSSVKADIYRLFGRERPVHQVFGGGKP 67
P P E + I D S ++ S S E P+ S ++ GGGK
Sbjct: 343 PVVPLQEGIRRTI-DSFSHLTAGSQSKREGPSKAS-----------------RILGGGKV 384
Query: 68 ADVFLWRNKKISAGVLGGATAIWVLFELFEYHLLTLVCHTLILALAILFLWANAHTFIKK 127
AD LW++ K + AI++L + Y+ T++ AL+ L A+ F+
Sbjct: 385 ADTLLWKDLKQT------LIAIFILISI--YYNFVATGSTVVTALSKALLVASVFLFLHG 436
Query: 128 APP---------CIP--EVHLPEEPFLQVASAFRIELNHAFAVLRSIASGRDLKSFLMVC 176
P IP + HL ++ ++ + N LRS+ G D F V
Sbjct: 437 ILPEKIFGYTVEKIPASQFHLSKDSSHDLSLSVISSWNTTVKALRSLCQGNDWSFFFKVV 496
>sp|Q7Z6E9|RBBP6_HUMAN E3 ubiquitin-protein ligase RBBP6 OS=Homo sapiens GN=RBBP6 PE=1 SV=1
Length = 1792
Score = 33.5 bits (75), Expect = 1.2, Method: Composition-based stats.
Identities = 15/37 (40%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Query: 2 AEREENP-AEPPMEKVSEKIHDHDSSSSSSSDSDNEE 37
ERE +P +EPP++K E+ D++ SSSS +E+
Sbjct: 1047 GERERSPRSEPPIKKAKEETPKTDNTKSSSSSQKDEK 1083
>sp|A3KGB4|TBC8B_MOUSE TBC1 domain family member 8B OS=Mus musculus GN=Tbc1d8b PE=2 SV=1
Length = 1114
Score = 32.7 bits (73), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 24/36 (66%)
Query: 13 MEKVSEKIHDHDSSSSSSSDSDNEEPAAQSSVKADI 48
ME+V K+H SS+S++ DS E A+SSVK D+
Sbjct: 1025 MEEVGRKLHSPASSASTARDSGPSEGNAESSVKKDL 1060
>sp|Q1LTT6|HSLV_BAUCH ATP-dependent protease subunit HslV OS=Baumannia cicadellinicola
subsp. Homalodisca coagulata GN=hslV PE=3 SV=1
Length = 180
Score = 32.7 bits (73), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 31/76 (40%), Gaps = 13/76 (17%)
Query: 56 RPVHQVFGGGKPADVF-------------LWRNKKISAGVLGGATAIWVLFELFEYHLLT 102
R H V GG A + L+ N K+ AG GG + LFELFE L +
Sbjct: 9 RNGHVVIGGDGQATIGNTIMKGNVRKVRRLYYNDKVIAGFAGGTADAFTLFELFERKLES 68
Query: 103 LVCHTLILALAILFLW 118
H + A+ + W
Sbjct: 69 YQGHLVKAAVELAKDW 84
>sp|A9X4U2|HSDD3_ARATH 3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 3
OS=Arabidopsis thaliana GN=3BETAHSD/D3 PE=2 SV=2
Length = 561
Score = 32.7 bits (73), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 59/138 (42%), Gaps = 16/138 (11%)
Query: 55 ERPVHQVFGGGKPADVFLWRNKK---ISAGVLGGATAIWVLFELFEYHLLTLVCHTLILA 111
+ Q+ G GK AD+ LWRN+K +S VL ++ + F + T L+
Sbjct: 367 QSTADQLLGCGKVADILLWRNEKKTFVSFLVLN----LFYYWFFFSGNTFTSSAAQLLFI 422
Query: 112 LAIL-----FLWANAHTF-IKKAPPCIPEVHLPEEPFLQVASAFRIELNHAFAVLRSIAS 165
A+ F+ + F + K PP E+ E ++S + N +S++S
Sbjct: 423 FAVALYGVSFVPSKIFGFQVNKIPPWRFEI--SESAVRDLSSDIVVVWNQGVRSFKSLSS 480
Query: 166 GRDLKSFLMVCAFSIHLI 183
G D F + S++L+
Sbjct: 481 GGDWIKFFKIAG-SLYLL 497
>sp|O94356|MEU6_SCHPO Meiotic expression up-regulated protein 6 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=meu6 PE=2 SV=1
Length = 651
Score = 32.0 bits (71), Expect = 2.8, Method: Composition-based stats.
Identities = 20/56 (35%), Positives = 33/56 (58%), Gaps = 12/56 (21%)
Query: 3 EREENPAEPPMEKVSEKIHDHDSSSSS----------SSDSDNEEPAAQSSVKADI 48
ER E AEP E VSE ++HDS S+ S+++DN++ A +++V A++
Sbjct: 8 ERPEQIAEPTFENVSEH-NEHDSGSAEAQVETLEVPLSNETDNDD-ATENAVPAEV 61
>sp|P75421|Y359_MYCPN Uncharacterized protein MG256 homolog OS=Mycoplasma pneumoniae
(strain ATCC 29342 / M129) GN=MPN_359 PE=4 SV=1
Length = 258
Score = 32.0 bits (71), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 3/80 (3%)
Query: 100 LLTLVCHTLILALAILFLWANAHTFIKKAPPCIPEVHLPEEPFLQVASAFRIELNHAFAV 159
L+ L+C + +L + W + F + I + +P L +A+ I LN AF
Sbjct: 42 LIALICFSNVLCFLFIATWFSTKGFGQHYRALIFTLFIPFVTSL-LANIIFINLNRAFRE 100
Query: 160 LRSIASGRDLKSFLMVCAFS 179
I+S +SFL++CAFS
Sbjct: 101 YFKISSKS--RSFLVICAFS 118
>sp|P34216|EDE1_YEAST EH domain-containing and endocytosis protein 1 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=EDE1 PE=1
SV=2
Length = 1381
Score = 31.2 bits (69), Expect = 4.9, Method: Composition-based stats.
Identities = 29/129 (22%), Positives = 53/129 (41%), Gaps = 7/129 (5%)
Query: 5 EENPAEPPMEKVSEKIHDHDSSSSSSSDSDNEEPAAQSSVKADIYRLFGRERPVHQVFGG 64
E P + +++ S S++ + ++ + PA S+ A +LF R Q G
Sbjct: 96 ESTPTQLASFSINQNPAPMQSGSATGNTNNTDIPALSSNDIAKFSQLFDRTAKGAQTVAG 155
Query: 65 GKPADVFLWRNKKISAGVLGGATAIWVLFELFEYHLLTLVCHTLILALAILFLWANAHTF 124
K D+FL ++ LG IW L + +L I+A+ ++ L + H
Sbjct: 156 DKAKDIFL--KARLPNQTLG---EIWALCDRDASGVLDK--SEFIMAMYLIQLCMSHHPS 208
Query: 125 IKKAPPCIP 133
+ P +P
Sbjct: 209 MNTPPAVLP 217
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.324 0.138 0.436
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 80,216,557
Number of Sequences: 539616
Number of extensions: 3134942
Number of successful extensions: 21988
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 21846
Number of HSP's gapped (non-prelim): 125
length of query: 213
length of database: 191,569,459
effective HSP length: 113
effective length of query: 100
effective length of database: 130,592,851
effective search space: 13059285100
effective search space used: 13059285100
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 59 (27.3 bits)