Query 028128
Match_columns 213
No_of_seqs 163 out of 322
Neff 5.0
Searched_HMMs 46136
Date Fri Mar 29 06:41:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028128.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028128hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1792 Reticulon [Intracellul 100.0 5.9E-47 1.3E-51 330.1 16.8 172 27-201 4-181 (230)
2 PF02453 Reticulon: Reticulon; 99.9 5.4E-27 1.2E-31 189.9 -7.6 132 67-200 1-140 (169)
3 PF06398 Pex24p: Integral pero 89.9 4.1 8.8E-05 37.3 10.7 40 43-88 14-53 (359)
4 PF08372 PRT_C: Plant phosphor 89.7 0.078 1.7E-06 44.4 -0.6 55 40-94 53-112 (156)
5 PF04842 DUF639: Plant protein 85.9 8.8 0.00019 39.1 10.9 109 67-181 506-624 (683)
6 PRK15489 nfrB bacteriophage N4 75.0 19 0.00042 36.8 9.2 106 64-192 348-454 (703)
7 COG1458 Predicted DNA-binding 72.9 5.7 0.00012 35.0 4.3 47 117-163 72-118 (221)
8 PF02453 Reticulon: Reticulon; 63.1 2.8 6E-05 33.6 0.4 29 66-94 99-127 (169)
9 PF08372 PRT_C: Plant phosphor 56.9 73 0.0016 26.7 7.8 54 149-202 74-128 (156)
10 TIGR03875 RNA_lig_partner RNA 50.5 18 0.00038 31.9 3.2 40 123-162 74-113 (206)
11 PRK14716 bacteriophage N4 adso 49.3 99 0.0021 30.4 8.5 13 180-192 429-441 (504)
12 PRK05702 flhB flagellar biosyn 49.3 1.6E+02 0.0035 27.7 9.7 18 157-174 131-148 (359)
13 PRK04358 hypothetical protein; 47.9 21 0.00045 31.7 3.3 40 123-162 78-117 (217)
14 PRK11234 nfrB bacteriophage N4 46.6 83 0.0018 32.3 7.8 44 147-192 403-446 (727)
15 COG0053 MMT1 Predicted Co/Zn/C 38.5 2.3E+02 0.0051 25.7 8.8 83 102-184 85-176 (304)
16 KOG1889 Putative phosphoinosit 37.7 87 0.0019 31.5 6.1 82 53-135 485-577 (579)
17 COG1377 FlhB Flagellar biosynt 33.2 2.3E+02 0.005 27.0 8.0 27 74-100 31-57 (363)
18 PHA03049 IMV membrane protein; 33.1 1.4E+02 0.003 22.0 5.1 20 148-167 48-68 (68)
19 PF07332 DUF1469: Protein of u 32.8 2.2E+02 0.0048 21.6 6.9 6 122-127 94-99 (121)
20 PRK13109 flhB flagellar biosyn 29.0 4.9E+02 0.011 24.5 10.0 18 157-174 133-150 (358)
21 PF13465 zf-H2C2_2: Zinc-finge 28.4 27 0.00059 20.2 0.7 12 202-213 10-21 (26)
22 PRK03072 heat shock protein Ht 27.6 2.7E+02 0.0058 25.1 7.2 19 73-91 4-22 (288)
23 PF08745 UPF0278: UPF0278 fami 27.3 21 0.00045 31.4 0.0 44 119-162 70-113 (205)
24 PF07406 NICE-3: NICE-3 protei 26.3 1.6E+02 0.0034 25.4 5.2 61 95-164 8-73 (186)
25 COG4795 PulJ Type II secretory 26.2 3.8E+02 0.0082 23.2 7.6 29 97-125 8-36 (194)
26 PF14995 TMEM107: Transmembran 26.0 1.2E+02 0.0026 24.3 4.2 63 53-117 22-95 (124)
27 PRK11875 psbT photosystem II r 25.7 1.5E+02 0.0032 18.7 3.6 11 123-133 20-30 (31)
28 CHL00031 psbT photosystem II p 25.1 1.3E+02 0.0029 19.2 3.3 11 123-133 20-30 (33)
29 PRK04897 heat shock protein Ht 24.5 2E+02 0.0042 26.0 5.8 21 73-93 7-27 (298)
30 PF14355 Abi_C: Abortive infec 24.4 2.2E+02 0.0048 20.4 5.1 43 117-165 4-46 (80)
31 PF13994 PgaD: PgaD-like prote 23.2 3.9E+02 0.0085 21.3 6.8 22 102-123 63-86 (138)
32 PHA02690 hypothetical protein; 21.8 59 0.0013 24.8 1.5 25 71-96 62-86 (90)
33 PF11444 DUF2895: Protein of u 21.4 2.1E+02 0.0045 25.1 5.1 42 114-155 28-76 (199)
34 PF11460 DUF3007: Protein of u 20.1 3.4E+02 0.0073 21.5 5.5 51 78-128 9-61 (104)
No 1
>KOG1792 consensus Reticulon [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.9e-47 Score=330.06 Aligned_cols=172 Identities=52% Similarity=0.831 Sum_probs=161.8
Q ss_pred CCCCCCCCCCCccccccchhccccccCCCCchhhhcCCCcccceeeeccCcchhhHHHHHHHHHHHHHHhccchHHHHHH
Q 028128 27 SSSSSDSDNEEPAAQSSVKADIYRLFGRERPVHQVFGGGKPADVFLWRNKKISAGVLGGATAIWVLFELFEYHLLTLVCH 106 (213)
Q Consensus 27 ~~s~s~~~~~~~~~~~~~~~~~~rlfgr~~~vh~~LGGGkvADvlLWRdkk~Sg~VL~~~t~iw~LFel~~ysllSlv~~ 106 (213)
++|++|+++++.++++ .+++++|+|+||+|+|+++|||++||++||||+|.||+||+++|++|++||..+|+++|++|+
T Consensus 4 ~~s~~~~~~~~~~~~s-~~~~~~rlf~~~~~v~~~lg~~~vaDlllWrdkk~s~~vl~~~~~~w~lf~~~~~~~vt~~~~ 82 (230)
T KOG1792|consen 4 LISSSNSESEKLKFTS-AIEKSSRLFGREGPVHKVLGGGKVADLLLWRDKKKSGTVLGVATALWLLFEFFSYNSVTLLCH 82 (230)
T ss_pred cccccccccccccccc-ccchhccccCCCccccccCCCCchhheeeeeccccceeehHHHHHHHHHHHHhhhhHHHHHHH
Confidence 3444488888877666 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhcc-CCC--CCC-ccccChHHHHHHHHHHHHHHHHHHHHHhhhhcccChHHHHHHHHHHHH-
Q 028128 107 TLILALAILFLWANAHTFIKK-APP--CIP-EVHLPEEPFLQVASAFRIELNHAFAVLRSIASGRDLKSFLMVCAFSIH- 181 (213)
Q Consensus 107 illl~L~~lFlws~~~~~lnk-s~p--~iP-~v~lsee~v~~~a~~l~~~iN~~l~~lr~Ia~gkDl~~flkvi~~Lwv- 181 (213)
+++++++++|+|+|+..++|| ++| .+| ++++|||.++++|++++.++|++++.+|++++|||+++|+|++++||+
T Consensus 83 i~ll~~~i~F~w~~~~~~~~k~~~~~~~lp~~i~ipee~~~~~a~~~~~~in~~l~~l~~ia~~~d~~~~lk~~v~lw~l 162 (230)
T KOG1792|consen 83 ILLLALAILFLWSKAVTFLNKKSEPGAYLPVEITIPEEFVLALASSLRVEINQALSELRDIALGRDLKDFLKVAVGLWIL 162 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCccccCCceeecCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 999999999999999998888 677 788 999999999999999999999999999999999999999999999999
Q ss_pred -HHHhhcchhHHHHHHHHHhc
Q 028128 182 -LICELFSFLLKHELYCCYWS 201 (213)
Q Consensus 182 -~VGs~fn~LTL~~l~ig~~~ 201 (213)
+||+||||+|+ +|+|+-.
T Consensus 163 S~vGs~fn~lTl--l~ig~v~ 181 (230)
T KOG1792|consen 163 SYVGSLFNFLTL--LYIGLVL 181 (230)
T ss_pred HHHHHhhhHHHH--HHHHHHH
Confidence 99999999999 7777643
No 2
>PF02453 Reticulon: Reticulon; InterPro: IPR003388 Eukaryotic proteins of the reticulon (RTN) family all share an association with the endoplasmic reticulum (ER). Whereas amino-terminal regions are not related to one another, all reticulon proteins share a 200 amino acid residue region of sequence similarity at the C-terminal. This region contains two large hydrophobic regions separated by a 66 residue hydrophilic segment. The conserved hydrophobic C-terminal portion has been shown to play an essential role in the association of reticulons with the ER membrane. The hydrophobic portions are supposed to be membrane-embedded and the hydrophilic 66 residue localized to the lumenal/extracellular face of the membrane. Most reticulons have a di-lysine ER retention motif at the C-terminal. Because of their likely association with the rough as well as the smooth ER, the reticulons might play some role in transport processes or in regulation of intracellular calcium levels. It has been suggested that the reticulons may be serving as ER-associated channel-like complexes [, , , ].; GO: 0005783 endoplasmic reticulum; PDB: 2KO2_A 2JV5_A 2G31_A.
Probab=99.90 E-value=5.4e-27 Score=189.91 Aligned_cols=132 Identities=33% Similarity=0.513 Sum_probs=50.4
Q ss_pred ccceeeeccCcchhhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHhhhccCC------CCCCccccChH
Q 028128 67 PADVFLWRNKKISAGVLGGATAIWVLFELFEYHLLTLVCHTLILALAILFLWANAHTFIKKAP------PCIPEVHLPEE 140 (213)
Q Consensus 67 vADvlLWRdkk~Sg~VL~~~t~iw~LFel~~ysllSlv~~illl~L~~lFlws~~~~~lnks~------p~iP~v~lsee 140 (213)
|+|+++||||+.||.+|++++++|++|++++||++|++|+++++++.+.++|....+++++.+ |+.++.++|||
T Consensus 1 V~dll~W~~~~~S~~v~~~~~~~~~l~~~~~~s~is~~s~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (169)
T PF02453_consen 1 VADLLLWRDPKKSGIVFGAILLFWLLFWLFNYSLISLVSYILLLLLAISFLYRLLSKVLSRSPKGPFKEPLDYDLEISEE 80 (169)
T ss_dssp ----------------------------------------------------THCCCTCCHHHHCTTHHHHCHHHHHCCH
T ss_pred CceeeEecCCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCccCCccccccccHH
Confidence 689999999999999999999999999999999999999999999999999999989888876 55568999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcccChHHHHHHHHHHHH--HHHhhcchhHHHHHHHHHh
Q 028128 141 PFLQVASAFRIELNHAFAVLRSIASGRDLKSFLMVCAFSIH--LICELFSFLLKHELYCCYW 200 (213)
Q Consensus 141 ~v~~~a~~l~~~iN~~l~~lr~Ia~gkDl~~flkvi~~Lwv--~VGs~fn~LTL~~l~ig~~ 200 (213)
.++++++.++..+|..+..+|++..++|.+.+++++++||+ ++|+++|+.|| +|+++.
T Consensus 81 ~~~~~~~~~~~~~n~~~~~~~~l~~~~~~~~~l~~~~~l~~l~~lg~~~s~~~L--~~l~~~ 140 (169)
T PF02453_consen 81 RVERLADSVAEWINSVLSWLRRLVFGEDPKKSLKVFVVLYILSFLGSWFSFLTL--LYLGVL 140 (169)
T ss_dssp HHHHHHHHCCCCCCHHHHHHHCCCHCT-TTGGG-----------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHcCHHHH--HHHHHH
Confidence 99999999999999999999999999999999999999999 99999999999 554443
No 3
>PF06398 Pex24p: Integral peroxisomal membrane peroxin; InterPro: IPR010482 Peroxisomes play diverse roles in the cell, compartmentalising many activities related to lipid metabolism and functioning in the decomposition of toxic hydrogen peroxide. Sequence similarity was identified between two hypothetical proteins and the peroxin integral membrane protein Pex24p [].
Probab=89.95 E-value=4.1 Score=37.33 Aligned_cols=40 Identities=13% Similarity=0.158 Sum_probs=25.7
Q ss_pred cchhccccccCCCCchhhhcCCCcccceeeeccCcchhhHHHHHHH
Q 028128 43 SVKADIYRLFGRERPVHQVFGGGKPADVFLWRNKKISAGVLGGATA 88 (213)
Q Consensus 43 ~~~~~~~rlfgr~~~vh~~LGGGkvADvlLWRdkk~Sg~VL~~~t~ 88 (213)
.+.++..++|-=+..++ .+.+++.|+|+-.+-.++...|.
T Consensus 14 ~l~~~l~~~f~~~~~~d------~vl~il~W~~p~~t~~~L~l~t~ 53 (359)
T PF06398_consen 14 RLSSRLGPIFPFQLILD------RVLRILTWTNPDYTLSFLLLYTF 53 (359)
T ss_pred HHHHHHHHhhHHHHHHH------HHHHeEEeCCCCcchHHHHHHHH
Confidence 34445555554443333 35689999999998888766653
No 4
>PF08372 PRT_C: Plant phosphoribosyltransferase C-terminal; InterPro: IPR013583 This domain is found at the C terminus of phosphoribosyltransferases and phosphoribosyltransferase-like proteins. It contains putative transmembrane regions. It often appears together with calcium-ion dependent C2 domains (IPR000008 from INTERPRO).
Probab=89.73 E-value=0.078 Score=44.44 Aligned_cols=55 Identities=20% Similarity=0.269 Sum_probs=39.5
Q ss_pred ccccchhccccccCCCCchhhhcC-----CCcccceeeeccCcchhhHHHHHHHHHHHHH
Q 028128 40 AQSSVKADIYRLFGRERPVHQVFG-----GGKPADVFLWRNKKISAGVLGGATAIWVLFE 94 (213)
Q Consensus 40 ~~~~~~~~~~rlfgr~~~vh~~LG-----GGkvADvlLWRdkk~Sg~VL~~~t~iw~LFe 94 (213)
++.+++.+..|+-.=-.-|-.++| |.++..++-|||+..|+....+..++-+.+.
T Consensus 53 ~~~~lr~Rydrlr~va~rvQ~vlgd~At~gERl~allsWrdP~aT~lf~~~clv~avvly 112 (156)
T PF08372_consen 53 PPDSLRMRYDRLRSVAGRVQNVLGDVATQGERLQALLSWRDPRATALFVVFCLVAAVVLY 112 (156)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccHHHHHHHHHHHHHHHHH
Confidence 455677777777643334666676 7899999999999999988877765444333
No 5
>PF04842 DUF639: Plant protein of unknown function (DUF639); InterPro: IPR006927 The sequences in this family are plant proteins of unknown function.
Probab=85.93 E-value=8.8 Score=39.12 Aligned_cols=109 Identities=16% Similarity=0.154 Sum_probs=69.0
Q ss_pred ccceeeeccCcchhhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHhhhcc--------CCCCCCcc--c
Q 028128 67 PADVFLWRNKKISAGVLGGATAIWVLFELFEYHLLTLVCHTLILALAILFLWANAHTFIKK--------APPCIPEV--H 136 (213)
Q Consensus 67 vADvlLWRdkk~Sg~VL~~~t~iw~LFel~~ysllSlv~~illl~L~~lFlws~~~~~lnk--------s~p~iP~v--~ 136 (213)
.-++..|+||.+|.++++..+.+ +.=+|.+|-+-++ ++.+++..+|.+-..-.+| .||+--.+ .
T Consensus 506 ~~~l~~We~P~kt~~Fl~~~~~i-I~r~wl~Y~~p~~-----Ll~~a~~Ml~~r~~~~~g~~~~~v~V~~pP~~nTvEqi 579 (683)
T PF04842_consen 506 LQKLASWEEPLKTLVFLALFLYI-IYRGWLGYIFPAF-----LLFSAVFMLWLRYQGRLGKSFGEVTVRDPPPKNTVEQI 579 (683)
T ss_pred HHHHhhccCcchhHHHHHHHHHH-HHHHHHHHHHHHH-----HHHHHHHHHHHHhhhccCCccceEEecCCCCccHHHHH
Confidence 44678999999999999887754 4456888865433 2333334456433322222 12222111 1
Q ss_pred cChHHHHHHHHHHHHHHHHHHHHHhhhhcccChHHHHHHHHHHHH
Q 028128 137 LPEEPFLQVASAFRIELNHAFAVLRSIASGRDLKSFLMVCAFSIH 181 (213)
Q Consensus 137 lsee~v~~~a~~l~~~iN~~l~~lr~Ia~gkDl~~flkvi~~Lwv 181 (213)
+.-..+-.-++......|=++-.+|.|.+-+..+..-+|++.|-.
T Consensus 580 lalQ~Ais~~E~~iQ~~NI~LLKiRsllls~~PqaT~~Va~~Ll~ 624 (683)
T PF04842_consen 580 LALQEAISQLEEYIQAANIVLLKIRSLLLSKFPQATNKVALALLG 624 (683)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 222222334566777889999999999999999998888877766
No 6
>PRK15489 nfrB bacteriophage N4 adsorption protein B; Provisional
Probab=74.96 E-value=19 Score=36.80 Aligned_cols=106 Identities=13% Similarity=0.090 Sum_probs=57.0
Q ss_pred CCcccceeeeccCcchhhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCc-cccChHHH
Q 028128 64 GGKPADVFLWRNKKISAGVLGGATAIWVLFELFEYHLLTLVCHTLILALAILFLWANAHTFIKKAPPCIPE-VHLPEEPF 142 (213)
Q Consensus 64 GGkvADvlLWRdkk~Sg~VL~~~t~iw~LFel~~ysllSlv~~illl~L~~lFlws~~~~~lnks~p~iP~-v~lsee~v 142 (213)
|...-.-++|||.|- ..| +++++++|++++..+.+.+ ....+..++..|. +..+.=..
T Consensus 348 ~~~~~~y~~~rdrkg------~~t-----------~~~~~~~y~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~ 406 (703)
T PRK15489 348 GSLATRYLLFRDRKG------IVT-----------SLVSIIAYVLLLNFLLLAV----LRRAGWWTMSFPSLFVTGGWMQ 406 (703)
T ss_pred chHhhhhhhhhccch------hHH-----------HHHHHHHHHHHHHHHHHHH----HHHcCCCccccccccCCcHHHH
Confidence 445555778999883 222 3456666776665443332 2333444454443 34444333
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcccChHHHHHHHHHHHHHHHhhcchhHH
Q 028128 143 LQVASAFRIELNHAFAVLRSIASGRDLKSFLMVCAFSIHLICELFSFLLK 192 (213)
Q Consensus 143 ~~~a~~l~~~iN~~l~~lr~Ia~gkDl~~flkvi~~Lwv~VGs~fn~LTL 192 (213)
.-+.--+...+|+.++..+=+..---+..-+.. ..-..+||+.||+..
T Consensus 407 ~~l~~n~~~~~~r~~~r~~f~~~~yg~~~~~~~--~~r~~~~n~in~~a~ 454 (703)
T PRK15489 407 YLLAANAVALANRLAQRFYFVGRLYGWEQGLLS--IPRMVVGNFINFMAV 454 (703)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhHHHHhcc--hHHHHHHHHHHHHHH
Confidence 334445556667666655544444444443311 111199999999987
No 7
>COG1458 Predicted DNA-binding protein containing PIN domain [General function prediction only]
Probab=72.94 E-value=5.7 Score=34.99 Aligned_cols=47 Identities=26% Similarity=0.369 Sum_probs=37.8
Q ss_pred HHHHHHhhhccCCCCCCccccChHHHHHHHHHHHHHHHHHHHHHhhh
Q 028128 117 LWANAHTFIKKAPPCIPEVHLPEEPFLQVASAFRIELNHAFAVLRSI 163 (213)
Q Consensus 117 lws~~~~~lnks~p~iP~v~lsee~v~~~a~~l~~~iN~~l~~lr~I 163 (213)
+|.++-..+-|.+|+--++.||-+.+.+++..+|..+|+++....+-
T Consensus 72 ~~~ki~twivkKtPnryevkiPa~ifyeyV~diR~RinkGlRvAE~~ 118 (221)
T COG1458 72 VIAKIETWIVKKTPNRYEVKIPAAIFYEYVEDIRERINKGLRVAEEA 118 (221)
T ss_pred HHHhhheeeEecCCCceeecCcHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence 35555555556677777999999999999999999999999876543
No 8
>PF02453 Reticulon: Reticulon; InterPro: IPR003388 Eukaryotic proteins of the reticulon (RTN) family all share an association with the endoplasmic reticulum (ER). Whereas amino-terminal regions are not related to one another, all reticulon proteins share a 200 amino acid residue region of sequence similarity at the C-terminal. This region contains two large hydrophobic regions separated by a 66 residue hydrophilic segment. The conserved hydrophobic C-terminal portion has been shown to play an essential role in the association of reticulons with the ER membrane. The hydrophobic portions are supposed to be membrane-embedded and the hydrophilic 66 residue localized to the lumenal/extracellular face of the membrane. Most reticulons have a di-lysine ER retention motif at the C-terminal. Because of their likely association with the rough as well as the smooth ER, the reticulons might play some role in transport processes or in regulation of intracellular calcium levels. It has been suggested that the reticulons may be serving as ER-associated channel-like complexes [, , , ].; GO: 0005783 endoplasmic reticulum; PDB: 2KO2_A 2JV5_A 2G31_A.
Probab=63.12 E-value=2.8 Score=33.58 Aligned_cols=29 Identities=14% Similarity=-0.116 Sum_probs=12.1
Q ss_pred cccceeeeccCcchhhHHHHHHHHHHHHH
Q 028128 66 KPADVFLWRNKKISAGVLGGATAIWVLFE 94 (213)
Q Consensus 66 kvADvlLWRdkk~Sg~VL~~~t~iw~LFe 94 (213)
...+++.|+|++.|..++.+..+++.+..
T Consensus 99 ~~~~l~~~~~~~~~l~~~~~l~~l~~lg~ 127 (169)
T PF02453_consen 99 WLRRLVFGEDPKKSLKVFVVLYILSFLGS 127 (169)
T ss_dssp HHHCCCHCT-TTGGG--------------
T ss_pred HHHHHHcCccHHHHHHHHHHHHHHHHHHH
Confidence 45688999999999998877766555543
No 9
>PF08372 PRT_C: Plant phosphoribosyltransferase C-terminal; InterPro: IPR013583 This domain is found at the C terminus of phosphoribosyltransferases and phosphoribosyltransferase-like proteins. It contains putative transmembrane regions. It often appears together with calcium-ion dependent C2 domains (IPR000008 from INTERPRO).
Probab=56.89 E-value=73 Score=26.74 Aligned_cols=54 Identities=13% Similarity=0.076 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHhhhhcccChHHHHHHHHHHHH-HHHhhcchhHHHHHHHHHhcC
Q 028128 149 FRIELNHAFAVLRSIASGRDLKSFLMVCAFSIH-LICELFSFLLKHELYCCYWSE 202 (213)
Q Consensus 149 l~~~iN~~l~~lr~Ia~gkDl~~flkvi~~Lwv-~VGs~fn~LTL~~l~ig~~~~ 202 (213)
+...+......++.+++++|-..+..+++++++ .+..++--+-..+++.|++--
T Consensus 74 vlgd~At~gERl~allsWrdP~aT~lf~~~clv~avvly~vP~r~l~l~~gly~~ 128 (156)
T PF08372_consen 74 VLGDVATQGERLQALLSWRDPRATALFVVFCLVAAVVLYFVPFRVLVLIWGLYKL 128 (156)
T ss_pred HHHHHHHHHHHHHHhhccCCccHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 344556777888899999999999998888888 666666666665566666543
No 10
>TIGR03875 RNA_lig_partner RNA ligase partner, MJ_0950 family. This uncharacterized protein family is found almost perfectly in the same set of genomes as the Pab1020 family described by model TIGR01209. These pairs are found mostly in Archaea, but also in a few bacteria (e.g. Alkalilimnicola ehrlichei MLHE-1, Aquifex aeolicus). While the partner protein has been described as homodimeric ligase that has RNA circularization activity, the function of this protein (also called UPF0278) is unknown.
Probab=50.49 E-value=18 Score=31.89 Aligned_cols=40 Identities=25% Similarity=0.416 Sum_probs=32.2
Q ss_pred hhhccCCCCCCccccChHHHHHHHHHHHHHHHHHHHHHhh
Q 028128 123 TFIKKAPPCIPEVHLPEEPFLQVASAFRIELNHAFAVLRS 162 (213)
Q Consensus 123 ~~lnks~p~iP~v~lsee~v~~~a~~l~~~iN~~l~~lr~ 162 (213)
..+-+.+|.-=++.||-+.+.++.+-+|..||++++...+
T Consensus 74 twv~~KsP~rye~~IPA~i~ye~I~e~R~RInkGLRVAEe 113 (206)
T TIGR03875 74 TWVVKKSPNRYEVKIPAEIFYEYIEEVRERIDKGLRVAEE 113 (206)
T ss_pred eEEEEcCCCeeeeeccHHHHHHHHHHHHHHHhcchhHHHH
Confidence 3334455555599999999999999999999999987644
No 11
>PRK14716 bacteriophage N4 adsorption protein B; Provisional
Probab=49.34 E-value=99 Score=30.37 Aligned_cols=13 Identities=8% Similarity=0.245 Sum_probs=10.4
Q ss_pred HHHHHhhcchhHH
Q 028128 180 IHLICELFSFLLK 192 (213)
Q Consensus 180 wv~VGs~fn~LTL 192 (213)
...+|++.|++.-
T Consensus 429 r~~~~n~in~~a~ 441 (504)
T PRK14716 429 RMVVGNIINFAAT 441 (504)
T ss_pred HHHHHHHHHHHHH
Confidence 3399999999876
No 12
>PRK05702 flhB flagellar biosynthesis protein FlhB; Reviewed
Probab=49.25 E-value=1.6e+02 Score=27.68 Aligned_cols=18 Identities=22% Similarity=0.305 Sum_probs=13.7
Q ss_pred HHHHhhhhcccChHHHHH
Q 028128 157 FAVLRSIASGRDLKSFLM 174 (213)
Q Consensus 157 l~~lr~Ia~gkDl~~flk 174 (213)
++-++++++.+.+..++|
T Consensus 131 i~G~KriFS~~~l~el~K 148 (359)
T PRK05702 131 LKGLKRMFSAQGLVELLK 148 (359)
T ss_pred HHHHHHhcCHHHHHHHHH
Confidence 667888888888777666
No 13
>PRK04358 hypothetical protein; Provisional
Probab=47.94 E-value=21 Score=31.70 Aligned_cols=40 Identities=28% Similarity=0.444 Sum_probs=32.2
Q ss_pred hhhccCCCCCCccccChHHHHHHHHHHHHHHHHHHHHHhh
Q 028128 123 TFIKKAPPCIPEVHLPEEPFLQVASAFRIELNHAFAVLRS 162 (213)
Q Consensus 123 ~~lnks~p~iP~v~lsee~v~~~a~~l~~~iN~~l~~lr~ 162 (213)
..+-+.+|.-=++.||-+.+.++.+-+|..||++++...+
T Consensus 78 twi~~KsP~ry~v~IPA~i~ye~I~~mR~RInkGLRVAEe 117 (217)
T PRK04358 78 TWIVKKSPNRYEIKIPAEIFYEYIEDMRERINKGLRVAEE 117 (217)
T ss_pred eEEEEcCCCceeeeccHHHHHHHHHHHHHHHhcchHHHHH
Confidence 3334445555599999999999999999999999987654
No 14
>PRK11234 nfrB bacteriophage N4 adsorption protein B; Provisional
Probab=46.57 E-value=83 Score=32.35 Aligned_cols=44 Identities=16% Similarity=0.136 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHhhhhcccChHHHHHHHHHHHHHHHhhcchhHH
Q 028128 147 SAFRIELNHAFAVLRSIASGRDLKSFLMVCAFSIHLICELFSFLLK 192 (213)
Q Consensus 147 ~~l~~~iN~~l~~lr~Ia~gkDl~~flkvi~~Lwv~VGs~fn~LTL 192 (213)
--+...+|+.++..+=+..---+..-+.. .+=..+||+.||+.-
T Consensus 403 ~n~~~~~~r~~~r~~~~~~~yg~~~~~~s--~~r~~~~n~in~~a~ 446 (727)
T PRK11234 403 LNFGLMVNRIVQRVIFVTGYYGLTQGLLS--VLRLLWGNLINFMAN 446 (727)
T ss_pred HHHHHHHHHHHHHHhhhhhhhhHHHHhcc--cccccHHHHHHHHHH
Confidence 33445556665554444333333332211 111189999999976
No 15
>COG0053 MMT1 Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]
Probab=38.51 E-value=2.3e+02 Score=25.72 Aligned_cols=83 Identities=17% Similarity=0.176 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCcc--------ccChHHHHHHHHHHHHHHHHHHHHHhhhhcccChHHHH
Q 028128 102 TLVCHTLILALAILFLWANAHTFIKKAPPCIPEV--------HLPEEPFLQVASAFRIELNHAFAVLRSIASGRDLKSFL 173 (213)
Q Consensus 102 Slv~~illl~L~~lFlws~~~~~lnks~p~iP~v--------~lsee~v~~~a~~l~~~iN~~l~~lr~Ia~gkDl~~fl 173 (213)
+++.-++++...+..+|.-...+++..++..|.. .+..+.+.++...+..++|.-.-..--.=.--|...++
T Consensus 85 sl~~~~~i~~~g~~i~~~a~~~~~~~~~~~~~~~~~~v~l~s~~~~~~l~~~~~~~~kk~~S~aL~Ada~h~~sD~~ts~ 164 (304)
T COG0053 85 SLIVSILIFAAGFEILLEAIKRLISPQPVEPPLLALGVALISIVIKEALYRYLRRVGKKTNSQALIADALHHRSDVLTSL 164 (304)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHhHHHHHHHHHHH
Confidence 3333344445555567777777777555555422 22334444444445444443322222111222666666
Q ss_pred HHHHHHHH-HHH
Q 028128 174 MVCAFSIH-LIC 184 (213)
Q Consensus 174 kvi~~Lwv-~VG 184 (213)
-+++++-. ..|
T Consensus 165 ~~lvgl~~~~~g 176 (304)
T COG0053 165 AVLVGLLGSLLG 176 (304)
T ss_pred HHHHHHHHHHhC
Confidence 65555544 444
No 16
>KOG1889 consensus Putative phosphoinositide phosphatase [Lipid transport and metabolism]
Probab=37.74 E-value=87 Score=31.53 Aligned_cols=82 Identities=15% Similarity=0.170 Sum_probs=49.7
Q ss_pred CCCCchhhhcCCCcccceee----------eccCcchhhHHHHHHHHHHHHHHhc-cchHHHHHHHHHHHHHHHHHHHHH
Q 028128 53 GRERPVHQVFGGGKPADVFL----------WRNKKISAGVLGGATAIWVLFELFE-YHLLTLVCHTLILALAILFLWANA 121 (213)
Q Consensus 53 gr~~~vh~~LGGGkvADvlL----------WRdkk~Sg~VL~~~t~iw~LFel~~-ysllSlv~~illl~L~~lFlws~~ 121 (213)
-||.+..-+||+=.|+|... |+---.- +++..++.+...-.++. =+++-.+-+..+.+++..+++.+.
T Consensus 485 ~rQDsiDL~lG~f~v~~s~s~~~pl~~~~~~~~~~~p-~i~lva~~m~~is~l~~~~~l~~~l~w~~~~~~s~~~i~~~g 563 (579)
T KOG1889|consen 485 TRQDSIDLFLGNFRVDVSRSDLSPLPLRRGLYILAAP-IIFLVALSMFIISLLFSTPNLLYRLFWFAIMVVSIAVILING 563 (579)
T ss_pred cccchHHHhcCCcccccccccCCCcccccCceeehhh-HHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhheech
Confidence 48999999999999888875 2221111 12222222222222222 233444445556666667888999
Q ss_pred HhhhccCCCCCCcc
Q 028128 122 HTFIKKAPPCIPEV 135 (213)
Q Consensus 122 ~~~lnks~p~iP~v 135 (213)
.+++|+|-+..|..
T Consensus 564 ~~fvnwPrl~~p~~ 577 (579)
T KOG1889|consen 564 DQFVNWPRLVLPQF 577 (579)
T ss_pred HHhcCCccccCccc
Confidence 99999998888754
No 17
>COG1377 FlhB Flagellar biosynthesis pathway, component FlhB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=33.24 E-value=2.3e+02 Score=27.00 Aligned_cols=27 Identities=22% Similarity=0.289 Sum_probs=18.8
Q ss_pred ccCcchhhHHHHHHHHHHHHHHhccch
Q 028128 74 RNKKISAGVLGGATAIWVLFELFEYHL 100 (213)
Q Consensus 74 Rdkk~Sg~VL~~~t~iw~LFel~~ysl 100 (213)
||-...++.++|++.+|++++...-++
T Consensus 31 ~el~~a~~ll~g~~~l~~~~~~~~~~l 57 (363)
T COG1377 31 RELTSAASLLVGFLLLFFFGSYFARRL 57 (363)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556677777888888888885544333
No 18
>PHA03049 IMV membrane protein; Provisional
Probab=33.14 E-value=1.4e+02 Score=22.01 Aligned_cols=20 Identities=10% Similarity=0.195 Sum_probs=10.9
Q ss_pred HHHHHHH-HHHHHHhhhhccc
Q 028128 148 AFRIELN-HAFAVLRSIASGR 167 (213)
Q Consensus 148 ~l~~~iN-~~l~~lr~Ia~gk 167 (213)
..+.+++ .-++.++++++|+
T Consensus 48 ~yvD~L~~~hl~SfyklFs~~ 68 (68)
T PHA03049 48 GYVDKLKSSHLNSFYKLFSSK 68 (68)
T ss_pred hHHhhcCHHHHHHHHHHhcCC
Confidence 3343333 2466777777764
No 19
>PF07332 DUF1469: Protein of unknown function (DUF1469); InterPro: IPR009937 This entry represents proteins found in hypothetical bacterial proteins where is is annotated as ycf49 or ycf49-like. The function is not known.
Probab=32.75 E-value=2.2e+02 Score=21.62 Aligned_cols=6 Identities=0% Similarity=0.301 Sum_probs=2.4
Q ss_pred Hhhhcc
Q 028128 122 HTFIKK 127 (213)
Q Consensus 122 ~~~lnk 127 (213)
.+-+++
T Consensus 94 ~~~l~~ 99 (121)
T PF07332_consen 94 RRRLRR 99 (121)
T ss_pred HHHHhc
Confidence 334443
No 20
>PRK13109 flhB flagellar biosynthesis protein FlhB; Reviewed
Probab=29.03 E-value=4.9e+02 Score=24.49 Aligned_cols=18 Identities=17% Similarity=0.080 Sum_probs=13.4
Q ss_pred HHHHhhhhcccChHHHHH
Q 028128 157 FAVLRSIASGRDLKSFLM 174 (213)
Q Consensus 157 l~~lr~Ia~gkDl~~flk 174 (213)
++-++++++.+.+..++|
T Consensus 133 i~GlKriFS~~~l~el~K 150 (358)
T PRK13109 133 MKGWTRIFGTSGQVEFLK 150 (358)
T ss_pred HHHHHHhcCHHHHHHHHH
Confidence 566788888888776666
No 21
>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A ....
Probab=28.43 E-value=27 Score=20.19 Aligned_cols=12 Identities=25% Similarity=0.827 Sum_probs=9.4
Q ss_pred CCCceeccccCC
Q 028128 202 EGKEHFICDLCV 213 (213)
Q Consensus 202 ~~~~~~~~~~~~ 213 (213)
.|...|.|+.|-
T Consensus 10 ~~~k~~~C~~C~ 21 (26)
T PF13465_consen 10 TGEKPYKCPYCG 21 (26)
T ss_dssp SSSSSEEESSSS
T ss_pred CCCCCCCCCCCc
Confidence 367789999993
No 22
>PRK03072 heat shock protein HtpX; Provisional
Probab=27.61 E-value=2.7e+02 Score=25.07 Aligned_cols=19 Identities=37% Similarity=0.408 Sum_probs=13.2
Q ss_pred eccCcchhhHHHHHHHHHH
Q 028128 73 WRNKKISAGVLGGATAIWV 91 (213)
Q Consensus 73 WRdkk~Sg~VL~~~t~iw~ 91 (213)
|+|..+|..++++.+++..
T Consensus 4 ~~~~~~t~~l~~~~~~~~~ 22 (288)
T PRK03072 4 HANGLKTALLLGGMSALIV 22 (288)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5677788888877776433
No 23
>PF08745 UPF0278: UPF0278 family; InterPro: IPR022785 This entry contains proteins of the UPF0278 family and proteins containing PIN domains. Members of the UPF0278 family are uncharacterised and about 200 amino acids in length.; PDB: 2LCQ_A.
Probab=27.33 E-value=21 Score=31.45 Aligned_cols=44 Identities=25% Similarity=0.400 Sum_probs=0.0
Q ss_pred HHHHhhhccCCCCCCccccChHHHHHHHHHHHHHHHHHHHHHhh
Q 028128 119 ANAHTFIKKAPPCIPEVHLPEEPFLQVASAFRIELNHAFAVLRS 162 (213)
Q Consensus 119 s~~~~~lnks~p~iP~v~lsee~v~~~a~~l~~~iN~~l~~lr~ 162 (213)
.++-..+-+.+|.-=++.||-+.+.++.+-+|..||++++...+
T Consensus 70 ~k~~twvv~KsP~ryev~IPA~i~yEyI~emR~RInKGLRVAEe 113 (205)
T PF08745_consen 70 SKLDTWVVKKSPDRYEVKIPAEIFYEYIEEMRERINKGLRVAEE 113 (205)
T ss_dssp --------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccc
Confidence 33344444455555599999999999999999999999987654
No 24
>PF07406 NICE-3: NICE-3 protein; InterPro: IPR010876 This family consists of several eukaryotic NICE-3 and related proteins. The gene coding for NICE-3 is part of the epidermal differentiation complex (EDC), which comprises a large number of genes that are of crucial importance for the maturation of the human epidermis []. The function of NICE-3 is unknown.
Probab=26.35 E-value=1.6e+02 Score=25.37 Aligned_cols=61 Identities=16% Similarity=0.404 Sum_probs=34.5
Q ss_pred HhccchHHHHHHHHHHHHHHHHHHHH--HHhhh--ccCCCCCC-ccccChHHHHHHHHHHHHHHHHHHHHHhhhh
Q 028128 95 LFEYHLLTLVCHTLILALAILFLWAN--AHTFI--KKAPPCIP-EVHLPEEPFLQVASAFRIELNHAFAVLRSIA 164 (213)
Q Consensus 95 l~~ysllSlv~~illl~L~~lFlws~--~~~~l--nks~p~iP-~v~lsee~v~~~a~~l~~~iN~~l~~lr~Ia 164 (213)
++|.+++=+++|..++++ .+|+|.+ ..++- .|-.|.+| .-.-|. .++.+|++.+....+|-
T Consensus 8 lsGv~vvlv~a~g~l~~v-llfIfaKRQI~Rf~lrsrrgphvp~G~~a~K--------~lk~eIe~rL~~v~~i~ 73 (186)
T PF07406_consen 8 LSGVNVVLVIAYGSLVFV-LLFIFAKRQIMRFALRSRRGPHVPVGHGAPK--------SLKEEIERRLSRVQKIK 73 (186)
T ss_pred ccceeeehhhHHHHHHHH-HHHHHHHHHHHHHHHhccCCCcccccCCCcH--------hHHHHHHHHHhhhhhee
Confidence 567788888887776553 3344444 55543 34456667 333333 45555666666655554
No 25
>COG4795 PulJ Type II secretory pathway, component PulJ [Intracellular trafficking and secretion]
Probab=26.17 E-value=3.8e+02 Score=23.20 Aligned_cols=29 Identities=21% Similarity=0.316 Sum_probs=21.5
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHhhh
Q 028128 97 EYHLLTLVCHTLILALAILFLWANAHTFI 125 (213)
Q Consensus 97 ~ysllSlv~~illl~L~~lFlws~~~~~l 125 (213)
|||++-++--+.+++++.+-.|....+..
T Consensus 8 GFTLLEvmvAl~i~All~l~a~~~L~s~~ 36 (194)
T COG4795 8 GFTLLEVLVALAIFALLLLLAFRFLDSAQ 36 (194)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888777777777776666665544
No 26
>PF14995 TMEM107: Transmembrane protein
Probab=26.00 E-value=1.2e+02 Score=24.30 Aligned_cols=63 Identities=17% Similarity=0.227 Sum_probs=42.3
Q ss_pred CCCCchhhhcCCCcccceeeeccCcchhhHHHHHHHHHHHHHHhc-----------cchHHHHHHHHHHHHHHHHH
Q 028128 53 GRERPVHQVFGGGKPADVFLWRNKKISAGVLGGATAIWVLFELFE-----------YHLLTLVCHTLILALAILFL 117 (213)
Q Consensus 53 gr~~~vh~~LGGGkvADvlLWRdkk~Sg~VL~~~t~iw~LFel~~-----------ysllSlv~~illl~L~~lFl 117 (213)
+|+..+..-+.++...| -|++++.+-.+-...+.+-+.+|+.| -++++..||..-..+...|+
T Consensus 22 ~~~~nv~a~lp~~~~~~--~y~~~~~~l~v~L~~s~~~l~ie~~g~~sG~smf~~~~nllsi~~H~~a~v~l~~f~ 95 (124)
T PF14995_consen 22 SREENVRACLPLDYTQA--EYSTADTSLVVALSVSLLCLAIEFWGFFSGVSMFSPTQNLLSICAHASAAVLLSFFI 95 (124)
T ss_pred hHHhhhHhhCCCCCcHH--HHHHhhhheehHHHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHHHHHHHHHH
Confidence 34444444444443333 38888887777777777777888755 36788999988887777764
No 27
>PRK11875 psbT photosystem II reaction center protein T; Reviewed
Probab=25.71 E-value=1.5e+02 Score=18.68 Aligned_cols=11 Identities=27% Similarity=0.474 Sum_probs=7.5
Q ss_pred hhhccCCCCCC
Q 028128 123 TFIKKAPPCIP 133 (213)
Q Consensus 123 ~~lnks~p~iP 133 (213)
..+=|.||++|
T Consensus 20 AIfFRepPri~ 30 (31)
T PRK11875 20 AIAFRDPPKID 30 (31)
T ss_pred hhhccCCCCCC
Confidence 34457888876
No 28
>CHL00031 psbT photosystem II protein T
Probab=25.14 E-value=1.3e+02 Score=19.16 Aligned_cols=11 Identities=27% Similarity=0.760 Sum_probs=7.7
Q ss_pred hhhccCCCCCC
Q 028128 123 TFIKKAPPCIP 133 (213)
Q Consensus 123 ~~lnks~p~iP 133 (213)
..+=|.||++|
T Consensus 20 AI~FRePPri~ 30 (33)
T CHL00031 20 AIFFREPPKVP 30 (33)
T ss_pred hheecCCCCCC
Confidence 34457888887
No 29
>PRK04897 heat shock protein HtpX; Provisional
Probab=24.46 E-value=2e+02 Score=26.03 Aligned_cols=21 Identities=19% Similarity=0.002 Sum_probs=17.1
Q ss_pred eccCcchhhHHHHHHHHHHHH
Q 028128 73 WRNKKISAGVLGGATAIWVLF 93 (213)
Q Consensus 73 WRdkk~Sg~VL~~~t~iw~LF 93 (213)
|||+.+|..++++.+++..++
T Consensus 7 ~~n~~~t~~ll~~~~~~~~~~ 27 (298)
T PRK04897 7 ASNKRKTVFLLVVFFLLLALV 27 (298)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 689999999999888765554
No 30
>PF14355 Abi_C: Abortive infection C-terminus
Probab=24.45 E-value=2.2e+02 Score=20.39 Aligned_cols=43 Identities=12% Similarity=0.155 Sum_probs=31.3
Q ss_pred HHHHHHhhhccCCCCCCccccChHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 028128 117 LWANAHTFIKKAPPCIPEVHLPEEPFLQVASAFRIELNHAFAVLRSIAS 165 (213)
Q Consensus 117 lws~~~~~lnks~p~iP~v~lsee~v~~~a~~l~~~iN~~l~~lr~Ia~ 165 (213)
+|..+...++-.+...++ +.++++...+...+ .++..+|+-..
T Consensus 4 L~k~~~~~L~~~~~~~~~-----~~ik~il~~l~~i~-~~i~~lRN~~g 46 (80)
T PF14355_consen 4 LVKKVKKALGLSPDSQSD-----KDIKKILSSLNSIV-SGINELRNKYG 46 (80)
T ss_pred HHHHHHHHHccCCcccch-----HHHHHHHHHHHHHH-HHHHHHHCCCC
Confidence 566777777777666665 77788888877777 78888887543
No 31
>PF13994 PgaD: PgaD-like protein
Probab=23.17 E-value=3.9e+02 Score=21.32 Aligned_cols=22 Identities=41% Similarity=0.557 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHH--HHHHHHHHHh
Q 028128 102 TLVCHTLILALA--ILFLWANAHT 123 (213)
Q Consensus 102 Slv~~illl~L~--~lFlws~~~~ 123 (213)
++.-|++++++. ++++|+...+
T Consensus 63 ~l~~y~~i~~~~a~~Li~Wa~yn~ 86 (138)
T PF13994_consen 63 TLQIYLLIALVNAVILILWAKYNR 86 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555443 4668988764
No 32
>PHA02690 hypothetical protein; Provisional
Probab=21.79 E-value=59 Score=24.83 Aligned_cols=25 Identities=36% Similarity=0.659 Sum_probs=15.2
Q ss_pred eeeccCcchhhHHHHHHHHHHHHHHh
Q 028128 71 FLWRNKKISAGVLGGATAIWVLFELF 96 (213)
Q Consensus 71 lLWRdkk~Sg~VL~~~t~iw~LFel~ 96 (213)
+.|||+-.-+ .++.+.++|+||...
T Consensus 62 l~~RN~gaca-mlAlaAA~~yLflcL 86 (90)
T PHA02690 62 LIWRNPGACA-MLALAAAVYYLFLCL 86 (90)
T ss_pred HHHcChhHHH-HHHHHHHHHHHHHHH
Confidence 3488876654 445555667777643
No 33
>PF11444 DUF2895: Protein of unknown function (DUF2895); InterPro: IPR021548 This is a bacterial family of uncharacterised proteins.
Probab=21.37 E-value=2.1e+02 Score=25.06 Aligned_cols=42 Identities=21% Similarity=0.306 Sum_probs=30.3
Q ss_pred HHHHHHHHHhhhcc-CCCCC------CccccChHHHHHHHHHHHHHHHH
Q 028128 114 ILFLWANAHTFIKK-APPCI------PEVHLPEEPFLQVASAFRIELNH 155 (213)
Q Consensus 114 ~lFlws~~~~~lnk-s~p~i------P~v~lsee~v~~~a~~l~~~iN~ 155 (213)
..+.|.+++.-+.- .||.+ |--++|.+.|...|-.+..++|+
T Consensus 28 ~~~gw~~aP~~ltih~PPDLrsGstr~~~eVP~~~VYaFa~yIfQQlN~ 76 (199)
T PF11444_consen 28 LIIGWMRAPKRLTIHNPPDLRSGSTRKWWEVPPETVYAFAFYIFQQLNR 76 (199)
T ss_pred HHHHHHhCCCceEEECCCccCCCceeEcccCChHHHHHHHHHHHHHHcc
Confidence 34578888774332 33332 36689999999999999999986
No 34
>PF11460 DUF3007: Protein of unknown function (DUF3007); InterPro: IPR021562 This is a family of uncharacterised proteins found in bacteria and eukaryotes.
Probab=20.12 E-value=3.4e+02 Score=21.54 Aligned_cols=51 Identities=14% Similarity=0.077 Sum_probs=32.7
Q ss_pred chhhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHH--HHHhhhccC
Q 028128 78 ISAGVLGGATAIWVLFELFEYHLLTLVCHTLILALAILFLWA--NAHTFIKKA 128 (213)
Q Consensus 78 ~Sg~VL~~~t~iw~LFel~~ysllSlv~~illl~L~~lFlws--~~~~~lnks 128 (213)
+..++|+..-+.+..|...|+--++.=-..-.++++++..|- -+.+..++.
T Consensus 9 Iglgv~~~Gg~~Y~~l~~~G~d~~~AGi~sq~~lv~glvgW~~sYlfRV~t~~ 61 (104)
T PF11460_consen 9 IGLGVFLLGGLLYGGLQAAGLDSLSAGIWSQALLVLGLVGWVSSYLFRVVTGK 61 (104)
T ss_pred ecHHHHHHHHHHHHHHHHcCCCchhhhHHHHHHHHHHHHHHHhHHHhhhccCC
Confidence 677788888888999999998877654444344444445453 344545443
Done!