Query 028128
Match_columns 213
No_of_seqs 163 out of 322
Neff 5.0
Searched_HMMs 29240
Date Mon Mar 25 10:37:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028128.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028128hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ko2_A Reticulon-4; NOGO, memb 98.6 7.5E-09 2.6E-13 76.4 0.1 60 115-174 12-79 (79)
2 2g31_A Reticulon-4; NOGO, heli 97.9 1.3E-07 4.5E-12 66.3 -5.3 51 118-168 3-60 (60)
3 3mjh_B Early endosome antigen 41.9 7.8 0.00027 23.8 0.7 10 204-213 3-12 (34)
4 2knc_A Integrin alpha-IIB; tra 38.5 59 0.002 21.8 4.8 32 100-133 16-47 (54)
5 2l8s_A Integrin alpha-1; trans 35.3 73 0.0025 21.4 4.8 30 100-131 13-42 (54)
6 3arc_T Photosystem II reaction 34.1 70 0.0024 19.4 4.1 11 123-133 20-30 (32)
7 4g8t_A Glucarate dehydratase; 29.0 21 0.00071 32.8 1.7 30 42-71 132-163 (464)
8 2elm_A Zinc finger protein 406 26.8 21 0.00073 19.7 0.9 11 203-213 6-16 (37)
9 2elx_A Zinc finger protein 406 26.7 20 0.0007 19.0 0.8 11 203-213 4-14 (35)
10 2elt_A Zinc finger protein 406 24.8 23 0.00079 19.0 0.8 11 203-213 6-16 (36)
11 1srk_A Zinc finger protein ZFP 24.7 24 0.00082 18.9 0.8 11 203-213 4-14 (35)
12 2k1a_A Integrin alpha-IIB; sin 23.8 1E+02 0.0035 19.5 3.8 28 101-130 15-42 (42)
13 1p7a_A BF3, BKLF, kruppel-like 22.5 27 0.00091 18.9 0.7 11 203-213 8-18 (37)
14 2elv_A Zinc finger protein 406 22.2 29 0.00098 18.7 0.8 11 203-213 6-16 (36)
15 2elq_A Zinc finger protein 406 22.2 30 0.001 18.7 0.9 12 202-213 5-16 (36)
16 2elp_A Zinc finger protein 406 21.9 29 0.001 18.8 0.8 11 203-213 6-16 (37)
17 2elr_A Zinc finger protein 406 21.6 29 0.00098 18.6 0.7 12 202-213 5-16 (36)
18 3pfr_A Mandelate racemase/muco 21.5 36 0.0012 31.2 1.8 29 43-71 116-146 (455)
19 3p0w_A Mandelate racemase/muco 20.4 38 0.0013 31.2 1.7 30 42-71 130-161 (470)
20 3mzn_A Glucarate dehydratase; 20.3 40 0.0014 30.8 1.8 30 42-71 111-143 (450)
21 1g2c_B Fusion protein (F); mem 20.2 1.8E+02 0.006 18.7 4.3 28 135-162 5-32 (43)
No 1
>2ko2_A Reticulon-4; NOGO, membrane protein, peripheral, DPC micelle, myelin INHI endoplasmic reticulum, membrane, phosphoprotein, transmembr; NMR {Mus musculus}
Probab=98.57 E-value=7.5e-09 Score=76.43 Aligned_cols=60 Identities=22% Similarity=0.195 Sum_probs=56.8
Q ss_pred HH-HHHHHHhhhccCCCCCC-------ccccChHHHHHHHHHHHHHHHHHHHHHhhhhcccChHHHHH
Q 028128 115 LF-LWANAHTFIKKAPPCIP-------EVHLPEEPFLQVASAFRIELNHAFAVLRSIASGRDLKSFLM 174 (213)
Q Consensus 115 lF-lws~~~~~lnks~p~iP-------~v~lsee~v~~~a~~l~~~iN~~l~~lr~Ia~gkDl~~flk 174 (213)
.| +|.++.+.++|++..+| |+.||+|.++++++.+...+|.++..+|++++++|+.+|+|
T Consensus 12 sfRiYk~vlqavqKtd~~hPFk~YLd~Di~ls~E~~~~~~~~~v~~in~~l~~LRrLfLVedlvDSLK 79 (79)
T 2ko2_A 12 GMRIYKGVIQAIQKSDEGHPFRAYLESEVAISEELVQKYSNSALGHVNSTIKELRRLFLVDDLVDSLK 79 (79)
T ss_dssp -CTHHHHTHHHHHCTTTTCCSHHHHHHHHHHTTCHHHHHHHCTTTHHHHHHHHHHHHHHHTCTTGGGC
T ss_pred HHHHHHHHHHHHHhCCCCCCccccccccccCCHHHHHHHHHHHHHHHHHHHHHHhHHhhcccHHHhcC
Confidence 44 89999999999999999 99999999999999999999999999999999999999875
No 2
>2g31_A Reticulon-4; NOGO, helix, signaling protein; NMR {Homo sapiens} PDB: 2jv5_A
Probab=97.91 E-value=1.3e-07 Score=66.28 Aligned_cols=51 Identities=22% Similarity=0.204 Sum_probs=47.2
Q ss_pred HHHHHhhhccCCCCCC-------ccccChHHHHHHHHHHHHHHHHHHHHHhhhhcccC
Q 028128 118 WANAHTFIKKAPPCIP-------EVHLPEEPFLQVASAFRIELNHAFAVLRSIASGRD 168 (213)
Q Consensus 118 ws~~~~~lnks~p~iP-------~v~lsee~v~~~a~~l~~~iN~~l~~lr~Ia~gkD 168 (213)
|.++.+.++|++..+| |+.||+|.++++++.+..++|.++..+|++++++|
T Consensus 3 Yk~vlqavqKt~~~hPFk~yLd~di~ls~e~~~~~~~~~v~~in~~l~~lrrLfLVed 60 (60)
T 2g31_A 3 YKGVIQAIQKSDEGHPFRAYLESEVAISEELVQKYSNSALGHVNCTIKELRRLFLVDD 60 (60)
T ss_dssp CCTTTTHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHGGGTCHHHHHHHHTSSCTTC
T ss_pred HHHHHHHHHhCCCCCCchhccccCcCCCHHHHHHHHHHHHHHHHHHHHHHhHhhccCC
Confidence 4566788899998999 99999999999999999999999999999999987
No 3
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=41.86 E-value=7.8 Score=23.77 Aligned_cols=10 Identities=50% Similarity=1.185 Sum_probs=8.3
Q ss_pred CceeccccCC
Q 028128 204 KEHFICDLCV 213 (213)
Q Consensus 204 ~~~~~~~~~~ 213 (213)
+|-|+|++|.
T Consensus 3 ~EGFiCP~C~ 12 (34)
T 3mjh_B 3 SEGFICPQCM 12 (34)
T ss_dssp SEEEECTTTC
T ss_pred CcccCCcHHH
Confidence 5679999994
No 4
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=38.50 E-value=59 Score=21.81 Aligned_cols=32 Identities=25% Similarity=0.567 Sum_probs=22.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCC
Q 028128 100 LLTLVCHTLILALAILFLWANAHTFIKKAPPCIP 133 (213)
Q Consensus 100 llSlv~~illl~L~~lFlws~~~~~lnks~p~iP 133 (213)
++++++-++++++++..+|. .+|++|.-|+..
T Consensus 16 i~svl~GLllL~li~~~LwK--~GFFkR~~~~~~ 47 (54)
T 2knc_A 16 LVGVLGGLLLLTILVLAMWK--VGFFKRNRPPLE 47 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--HHHTTTTCCSCC
T ss_pred HHHHHHHHHHHHHHHHHHHH--cCcccCCCCCcc
Confidence 35666667777777777884 578888765443
No 5
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=35.28 E-value=73 Score=21.41 Aligned_cols=30 Identities=37% Similarity=0.532 Sum_probs=21.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhccCCCC
Q 028128 100 LLTLVCHTLILALAILFLWANAHTFIKKAPPC 131 (213)
Q Consensus 100 llSlv~~illl~L~~lFlws~~~~~lnks~p~ 131 (213)
++++++-++++++++..+|. .+|++|.-|+
T Consensus 13 i~svl~GLLLL~Lii~~LwK--~GFFKR~~~~ 42 (54)
T 2l8s_A 13 LLSAFAGLLLLMLLILALWK--IGFFKRPLKK 42 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--HHHTTSCCSC
T ss_pred HHHHHHHHHHHHHHHHHHHH--cCcccCCCcc
Confidence 35666667777777777884 5788887543
No 6
>3arc_T Photosystem II reaction center protein T; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_T* 2axt_T* 3bz1_T* 3bz2_T* 3kzi_T* 3prq_T* 3prr_T* 3a0b_T* 3a0h_T*
Probab=34.08 E-value=70 Score=19.38 Aligned_cols=11 Identities=27% Similarity=0.579 Sum_probs=7.8
Q ss_pred hhhccCCCCCC
Q 028128 123 TFIKKAPPCIP 133 (213)
Q Consensus 123 ~~lnks~p~iP 133 (213)
..+=|.||++|
T Consensus 20 AI~FRePPri~ 30 (32)
T 3arc_T 20 AIFFREPPRIT 30 (32)
T ss_dssp HHHTSCCCCCC
T ss_pred hhhhcCCCCCC
Confidence 34458899887
No 7
>4g8t_A Glucarate dehydratase; enolase, enzyme function INI EFI, structural genomics, lyase; 1.70A {Actinobacillus succinogenes} PDB: 1ec7_A 1ec8_A* 1ec9_A* 1ecq_A* 1jdf_A* 3pwi_A* 1jct_A* 3pwg_A* 1bqg_A
Probab=28.99 E-value=21 Score=32.78 Aligned_cols=30 Identities=23% Similarity=0.535 Sum_probs=22.6
Q ss_pred ccchhccccccCC--CCchhhhcCCCccccee
Q 028128 42 SSVKADIYRLFGR--ERPVHQVFGGGKPADVF 71 (213)
Q Consensus 42 ~~~~~~~~rlfgr--~~~vh~~LGGGkvADvl 71 (213)
+++.-....+.|+ .+||+++||||++.|-+
T Consensus 132 sAID~ALWDl~gK~~g~Pv~~LLGgG~~Rd~V 163 (464)
T 4g8t_A 132 TAIEAAMLDLLGQFLGVTVASLLGDGQQRDAV 163 (464)
T ss_dssp HHHHHHHHHHHHHHHTSBTGGGSTTSCCCSEE
T ss_pred HHHHHHHHHHHHHHcCCcHHHHhCCCCCCceE
Confidence 4555566667765 57999999999988754
No 8
>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=26.82 E-value=21 Score=19.73 Aligned_cols=11 Identities=18% Similarity=0.670 Sum_probs=8.7
Q ss_pred CCceeccccCC
Q 028128 203 GKEHFICDLCV 213 (213)
Q Consensus 203 ~~~~~~~~~~~ 213 (213)
|..+|.|+.|-
T Consensus 6 ~~k~~~C~~C~ 16 (37)
T 2elm_A 6 SGHLYYCSQCH 16 (37)
T ss_dssp SSCEEECSSSS
T ss_pred CCcCeECCCCC
Confidence 56789999993
No 9
>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=26.73 E-value=20 Score=19.03 Aligned_cols=11 Identities=36% Similarity=1.277 Sum_probs=8.8
Q ss_pred CCceeccccCC
Q 028128 203 GKEHFICDLCV 213 (213)
Q Consensus 203 ~~~~~~~~~~~ 213 (213)
|...|.|+.|.
T Consensus 4 ~~k~~~C~~C~ 14 (35)
T 2elx_A 4 GSSGYVCALCL 14 (35)
T ss_dssp CCCSEECSSSC
T ss_pred CCCCeECCCCc
Confidence 56789999993
No 10
>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.84 E-value=23 Score=19.00 Aligned_cols=11 Identities=18% Similarity=0.670 Sum_probs=8.7
Q ss_pred CCceeccccCC
Q 028128 203 GKEHFICDLCV 213 (213)
Q Consensus 203 ~~~~~~~~~~~ 213 (213)
+...|.|+.|-
T Consensus 6 ~~k~~~C~~C~ 16 (36)
T 2elt_A 6 SGKPYKCPQCS 16 (36)
T ss_dssp CCCSEECSSSS
T ss_pred CCCCCCCCCCC
Confidence 56689999993
No 11
>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1
Probab=24.70 E-value=24 Score=18.88 Aligned_cols=11 Identities=45% Similarity=1.407 Sum_probs=8.8
Q ss_pred CCceeccccCC
Q 028128 203 GKEHFICDLCV 213 (213)
Q Consensus 203 ~~~~~~~~~~~ 213 (213)
|...|.|+.|.
T Consensus 4 ~~k~~~C~~C~ 14 (35)
T 1srk_A 4 GKRPFVCRICL 14 (35)
T ss_dssp CCSCEECSSSC
T ss_pred CCcCeeCCCCC
Confidence 56789999993
No 12
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=23.76 E-value=1e+02 Score=19.49 Aligned_cols=28 Identities=25% Similarity=0.610 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccCCC
Q 028128 101 LTLVCHTLILALAILFLWANAHTFIKKAPP 130 (213)
Q Consensus 101 lSlv~~illl~L~~lFlws~~~~~lnks~p 130 (213)
+++++-++++++++..+|. .+|++|.-|
T Consensus 15 ~s~l~GLllL~li~~~LwK--~GFFkR~~~ 42 (42)
T 2k1a_A 15 VGVLGGLLLLTILVLAMWK--VGFFKRNRP 42 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHH--TTTTCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHH--cCcccCCCC
Confidence 4566667777777777884 468877643
No 13
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Probab=22.51 E-value=27 Score=18.95 Aligned_cols=11 Identities=36% Similarity=0.760 Sum_probs=8.7
Q ss_pred CCceeccccCC
Q 028128 203 GKEHFICDLCV 213 (213)
Q Consensus 203 ~~~~~~~~~~~ 213 (213)
|...|.|+.|.
T Consensus 8 ~~k~~~C~~C~ 18 (37)
T 1p7a_A 8 GIKPFQCPDCD 18 (37)
T ss_dssp CSSSBCCTTTC
T ss_pred CCCCccCCCCC
Confidence 56789999983
No 14
>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.25 E-value=29 Score=18.74 Aligned_cols=11 Identities=18% Similarity=0.613 Sum_probs=8.6
Q ss_pred CCceeccccCC
Q 028128 203 GKEHFICDLCV 213 (213)
Q Consensus 203 ~~~~~~~~~~~ 213 (213)
+...|.|+.|.
T Consensus 6 ~~k~~~C~~C~ 16 (36)
T 2elv_A 6 SGLLYDCHICE 16 (36)
T ss_dssp CCCCEECSSSC
T ss_pred CCCCeECCCCC
Confidence 45679999993
No 15
>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.25 E-value=30 Score=18.68 Aligned_cols=12 Identities=33% Similarity=0.836 Sum_probs=9.1
Q ss_pred CCCceeccccCC
Q 028128 202 EGKEHFICDLCV 213 (213)
Q Consensus 202 ~~~~~~~~~~~~ 213 (213)
.+...|.|+.|-
T Consensus 5 ~~~k~~~C~~C~ 16 (36)
T 2elq_A 5 SSGKPFKCSLCE 16 (36)
T ss_dssp CCCCSEECSSSS
T ss_pred CCCCCccCCCCC
Confidence 356789999993
No 16
>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.89 E-value=29 Score=18.82 Aligned_cols=11 Identities=18% Similarity=0.540 Sum_probs=8.6
Q ss_pred CCceeccccCC
Q 028128 203 GKEHFICDLCV 213 (213)
Q Consensus 203 ~~~~~~~~~~~ 213 (213)
+...|.|+.|-
T Consensus 6 ~~k~~~C~~C~ 16 (37)
T 2elp_A 6 SGRAMKCPYCD 16 (37)
T ss_dssp CCCCEECSSSS
T ss_pred CCCCeECCCCC
Confidence 55679999993
No 17
>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.61 E-value=29 Score=18.60 Aligned_cols=12 Identities=25% Similarity=0.841 Sum_probs=9.2
Q ss_pred CCCceeccccCC
Q 028128 202 EGKEHFICDLCV 213 (213)
Q Consensus 202 ~~~~~~~~~~~~ 213 (213)
.+...|.|+.|-
T Consensus 5 ~~~~~~~C~~C~ 16 (36)
T 2elr_A 5 SSGKTHLCDMCG 16 (36)
T ss_dssp CCCSSCBCTTTC
T ss_pred CCCCCeecCcCC
Confidence 456789999983
No 18
>3pfr_A Mandelate racemase/muconate lactonizing protein; emolase superfamily fold, D-glucarate dehydratase, D-glucara isomerase; HET: GKR; 1.90A {Actinobacillus succinogenes} PDB: 3n6j_A 3n6h_A* 4gyp_C*
Probab=21.50 E-value=36 Score=31.17 Aligned_cols=29 Identities=31% Similarity=0.601 Sum_probs=20.1
Q ss_pred cchhccccccCC--CCchhhhcCCCccccee
Q 028128 43 SVKADIYRLFGR--ERPVHQVFGGGKPADVF 71 (213)
Q Consensus 43 ~~~~~~~rlfgr--~~~vh~~LGGGkvADvl 71 (213)
++.-....+.|+ .+||+++||||++.|-+
T Consensus 116 AID~ALWDl~gK~~g~Pv~~LLGgG~~r~~v 146 (455)
T 3pfr_A 116 ALEAALLDLMGQFLGVPVAELLGPGKQRDEV 146 (455)
T ss_dssp HHHHHHHHHHHHHHTSBGGGGSTTSCCCSEE
T ss_pred HHHHHHHHHHHHHcCCcHHHHhCCCCcCCeE
Confidence 444445555553 57999999998877654
No 19
>3p0w_A Mandelate racemase/muconate lactonizing protein; structural genomics, PSI-2, protein structure initiative; HET: GKR; 1.71A {Ralstonia pickettii} PDB: 4hn8_A 3nxl_A
Probab=20.39 E-value=38 Score=31.22 Aligned_cols=30 Identities=33% Similarity=0.656 Sum_probs=20.9
Q ss_pred ccchhccccccCC--CCchhhhcCCCccccee
Q 028128 42 SSVKADIYRLFGR--ERPVHQVFGGGKPADVF 71 (213)
Q Consensus 42 ~~~~~~~~rlfgr--~~~vh~~LGGGkvADvl 71 (213)
+++.-....+.|+ .+||+++||||++.|-+
T Consensus 130 sAID~ALWDl~gK~~g~Pv~~LLGgG~~r~~v 161 (470)
T 3p0w_A 130 TAVEAALLDLLGQFLEVPVAELLGAGQQRDSA 161 (470)
T ss_dssp HHHHHHHHHHHHHHHTSBGGGTSTTSCCCSEE
T ss_pred HHHHHHHHHHHHHHcCCcHHHHhCCCCCCCeE
Confidence 3444455556653 57999999988887754
No 20
>3mzn_A Glucarate dehydratase; lyase, structural genomics, protein structure initiative, PS nysgrc; 1.85A {Chromohalobacter salexigens} PDB: 3nfu_A
Probab=20.32 E-value=40 Score=30.82 Aligned_cols=30 Identities=27% Similarity=0.709 Sum_probs=21.5
Q ss_pred ccchhccccccCC--CCchhhhcCC-Cccccee
Q 028128 42 SSVKADIYRLFGR--ERPVHQVFGG-GKPADVF 71 (213)
Q Consensus 42 ~~~~~~~~rlfgr--~~~vh~~LGG-GkvADvl 71 (213)
+++.-....+.|+ .+||+++||| |++.|-+
T Consensus 111 sAID~ALwDl~gK~~g~Pv~~LLG~~G~~r~~v 143 (450)
T 3mzn_A 111 TAIESALFDLFGQALGMPVADLLGQYGRQRDEV 143 (450)
T ss_dssp HHHHHHHHHHHHHHHTCBGGGGSTTTCCCCSEE
T ss_pred HHHHHHHHHHHHHHcCCcHHHHhCCCCCcCceE
Confidence 3455555666664 5799999999 9988754
No 21
>1g2c_B Fusion protein (F); membrane fusion, pneumovirus, HRSV, viral protein; 2.30A {Human respiratory syncytial virus} SCOP: h.3.2.1
Probab=20.21 E-value=1.8e+02 Score=18.69 Aligned_cols=28 Identities=21% Similarity=0.414 Sum_probs=23.6
Q ss_pred cccChHHHHHHHHHHHHHHHHHHHHHhh
Q 028128 135 VHLPEEPFLQVASAFRIELNHAFAVLRS 162 (213)
Q Consensus 135 v~lsee~v~~~a~~l~~~iN~~l~~lr~ 162 (213)
+..||+++.-.-+.+-..||+....++.
T Consensus 5 l~FP~DqFdvai~qV~esI~qS~~~i~~ 32 (43)
T 1g2c_B 5 LVFPSDEFDASISQVNEKINQSLAFIRK 32 (43)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5689999998889999999998877763
Done!