Query 028128
Match_columns 213
No_of_seqs 163 out of 322
Neff 5.0
Searched_HMMs 13730
Date Mon Mar 25 10:37:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028128.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/028128hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1i5za1 a.4.5.4 (A:138-206) Ca 44.2 10 0.00075 23.8 3.4 31 134-164 27-57 (69)
2 d1wjpa1 g.37.1.1 (A:1-42) Zinc 33.7 6.4 0.00047 23.5 0.9 12 202-213 12-23 (42)
3 d2ds5a1 g.39.1.11 (A:11-48) Cl 33.4 2.7 0.00019 25.0 -0.9 11 203-213 20-30 (38)
4 d2gaua1 a.4.5.4 (A:152-232) Tr 33.0 26 0.0019 22.2 4.1 31 134-164 27-57 (81)
5 d2ct1a2 g.37.1.1 (A:8-43) Tran 31.5 6.8 0.00049 22.5 0.7 11 203-213 5-15 (36)
6 d1srka_ g.37.1.1 (A:) Zinc fin 27.6 9.1 0.00066 21.9 0.8 12 202-213 3-14 (35)
7 d1a1ia3 g.37.1.1 (A:160-187) Z 25.8 8.8 0.00064 21.3 0.5 9 205-213 2-10 (28)
8 d1p7aa_ g.37.1.1 (A:) Kruppel- 23.4 11 0.00084 21.4 0.7 12 202-213 7-18 (37)
9 d1x6ha2 g.37.1.1 (A:8-43) Tran 21.1 14 0.001 20.9 0.8 11 203-213 5-15 (36)
10 d2gdqa2 d.54.1.1 (A:4-118) Hyp 19.1 16 0.0012 24.6 0.9 23 42-64 91-115 (115)
No 1
>d1i5za1 a.4.5.4 (A:138-206) Catabolite gene activator protein (CAP), C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=44.15 E-value=10 Score=23.84 Aligned_cols=31 Identities=10% Similarity=0.220 Sum_probs=28.1
Q ss_pred ccccChHHHHHHHHHHHHHHHHHHHHHhhhh
Q 028128 134 EVHLPEEPFLQVASAFRIELNHAFAVLRSIA 164 (213)
Q Consensus 134 ~v~lsee~v~~~a~~l~~~iN~~l~~lr~Ia 164 (213)
++.++++...++...-+..+|+.++.+++-.
T Consensus 27 ~l~lt~~~lA~~~G~sRetvsr~L~~l~~~g 57 (69)
T d1i5za1 27 QIKITRQEIGQIVGCSRETVGRILKMLEDQN 57 (69)
T ss_dssp EEECCHHHHHHHHTCCHHHHHHHHHHHHHTT
T ss_pred ecCCCHHHHHHHHCCCHHHHHHHHHHHHHCC
Confidence 6789999999999999999999999998754
No 2
>d1wjpa1 g.37.1.1 (A:1-42) Zinc finger protein 295, ZNF295 {Human (Homo sapiens) [TaxId: 9606]}
Probab=33.67 E-value=6.4 Score=23.48 Aligned_cols=12 Identities=50% Similarity=1.013 Sum_probs=10.1
Q ss_pred CCCceeccccCC
Q 028128 202 EGKEHFICDLCV 213 (213)
Q Consensus 202 ~~~~~~~~~~~~ 213 (213)
+.||-|.|.+|-
T Consensus 12 enke~y~crlcn 23 (42)
T d1wjpa1 12 ENKEVYQCRLCN 23 (42)
T ss_dssp CCCCCCBCTTTC
T ss_pred cccceeeeeehh
Confidence 469999999993
No 3
>d2ds5a1 g.39.1.11 (A:11-48) ClpX chaperone zinc binding domain {Escherichia coli [TaxId: 562]}
Probab=33.37 E-value=2.7 Score=25.04 Aligned_cols=11 Identities=55% Similarity=1.259 Sum_probs=8.7
Q ss_pred CCceeccccCC
Q 028128 203 GKEHFICDLCV 213 (213)
Q Consensus 203 ~~~~~~~~~~~ 213 (213)
|...||||.||
T Consensus 20 G~~~~ICd~CV 30 (38)
T d2ds5a1 20 GPSVYICDECV 30 (38)
T ss_dssp CSSCEEEHHHH
T ss_pred CCCCEEcHHHH
Confidence 56789999885
No 4
>d2gaua1 a.4.5.4 (A:152-232) Transcriptional regulator PG0396, C-terminal domain {Porphyromonas gingivalis [TaxId: 837]}
Probab=32.98 E-value=26 Score=22.16 Aligned_cols=31 Identities=10% Similarity=0.077 Sum_probs=27.9
Q ss_pred ccccChHHHHHHHHHHHHHHHHHHHHHhhhh
Q 028128 134 EVHLPEEPFLQVASAFRIELNHAFAVLRSIA 164 (213)
Q Consensus 134 ~v~lsee~v~~~a~~l~~~iN~~l~~lr~Ia 164 (213)
++.++++...++...-+..+|+.++.+++-.
T Consensus 27 ~~~lt~~eLA~~~G~sretvsr~L~~l~~~g 57 (81)
T d2gaua1 27 SIYLSREELATLSNMTVSNAIRTLSTFVSER 57 (81)
T ss_dssp SCCCCHHHHHHHTTSCHHHHHHHHHHHHHTT
T ss_pred eecCCHHHHHHHHCCCHHHHHHHHHHHHHCC
Confidence 6789999999999999999999999998754
No 5
>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}
Probab=31.52 E-value=6.8 Score=22.45 Aligned_cols=11 Identities=27% Similarity=0.948 Sum_probs=9.4
Q ss_pred CCceeccccCC
Q 028128 203 GKEHFICDLCV 213 (213)
Q Consensus 203 ~~~~~~~~~~~ 213 (213)
|..+|.|+.|.
T Consensus 5 gekP~~C~~C~ 15 (36)
T d2ct1a2 5 GEKPYECYICH 15 (36)
T ss_dssp CCCSEECTTTC
T ss_pred CCCCEeCCCCc
Confidence 67899999993
No 6
>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=27.60 E-value=9.1 Score=21.90 Aligned_cols=12 Identities=42% Similarity=1.295 Sum_probs=10.1
Q ss_pred CCCceeccccCC
Q 028128 202 EGKEHFICDLCV 213 (213)
Q Consensus 202 ~~~~~~~~~~~~ 213 (213)
-|..+|.|+.|-
T Consensus 3 TGekPy~C~~C~ 14 (35)
T d1srka_ 3 SGKRPFVCRICL 14 (35)
T ss_dssp SCCSCEECSSSC
T ss_pred CCCccccCCCCC
Confidence 478899999993
No 7
>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=25.75 E-value=8.8 Score=21.25 Aligned_cols=9 Identities=44% Similarity=1.239 Sum_probs=7.5
Q ss_pred ceeccccCC
Q 028128 205 EHFICDLCV 213 (213)
Q Consensus 205 ~~~~~~~~~ 213 (213)
.+|.||.|.
T Consensus 2 kPf~C~~Cg 10 (28)
T d1a1ia3 2 KPFACDICG 10 (28)
T ss_dssp CCEECTTTC
T ss_pred CCcccchhh
Confidence 479999994
No 8
>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]}
Probab=23.40 E-value=11 Score=21.39 Aligned_cols=12 Identities=33% Similarity=0.695 Sum_probs=9.6
Q ss_pred CCCceeccccCC
Q 028128 202 EGKEHFICDLCV 213 (213)
Q Consensus 202 ~~~~~~~~~~~~ 213 (213)
-|..+|.|+.|-
T Consensus 7 TgeKPy~C~~C~ 18 (37)
T d1p7aa_ 7 TGIKPFQCPDCD 18 (37)
T ss_dssp CCSSSBCCTTTC
T ss_pred CCccCeEeCCCC
Confidence 367899999993
No 9
>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.13 E-value=14 Score=20.85 Aligned_cols=11 Identities=27% Similarity=0.936 Sum_probs=9.3
Q ss_pred CCceeccccCC
Q 028128 203 GKEHFICDLCV 213 (213)
Q Consensus 203 ~~~~~~~~~~~ 213 (213)
|..+|.|+.|-
T Consensus 5 gekPy~C~~C~ 15 (36)
T d1x6ha2 5 GEKPYACSHCD 15 (36)
T ss_dssp CCCCEECSSSS
T ss_pred CCCCEECCCCC
Confidence 67899999993
No 10
>d2gdqa2 d.54.1.1 (A:4-118) Hypothetical protein YitF {Bacillus subtilis [TaxId: 1423]}
Probab=19.07 E-value=16 Score=24.64 Aligned_cols=23 Identities=22% Similarity=0.495 Sum_probs=16.8
Q ss_pred ccchhccccccCC--CCchhhhcCC
Q 028128 42 SSVKADIYRLFGR--ERPVHQVFGG 64 (213)
Q Consensus 42 ~~~~~~~~rlfgr--~~~vh~~LGG 64 (213)
+++.-....++|+ ++|++++|||
T Consensus 91 aaid~AlwDl~~K~~~~Pl~~lLGG 115 (115)
T d2gdqa2 91 SAVSMALTEIAAKAADCSVCELWGG 115 (115)
T ss_dssp HHHHHHHHHHHHHHTTSBHHHHTTC
T ss_pred HHHHHHHHHHHHHHhCCCHHHHcCC
Confidence 4555556666764 6799999998
Done!