BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>028129
MAFAHYLTAVRPVPVVTSEQTKISILPLFTSSSSSSSSVSTQSLFSKARKLSLFPRFRRI
GHKAKVKSPESEINSVAEAFTNFKHLLLPITDQNPYLSEGTRQAAATTAALAKKYGADIT
VVVIDERQKESLPEHENRLSSIRWHLSEGGFQEFRLLERLGEGSSKPTAIIGDVADELNL
DLVIISMEAIHSKHVDANLLAEFIPCPVLLLPL

High Scoring Gene Products

Symbol, full name Information P value
AT5G66090 protein from Arabidopsis thaliana 8.0e-53

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  028129
        (213 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2156892 - symbol:AT5G66090 "AT5G66090" species...   547  8.0e-53   1


>TAIR|locus:2156892 [details] [associations]
            symbol:AT5G66090 "AT5G66090" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0009507
            "chloroplast" evidence=ISM;IDA] [GO:0009570 "chloroplast stroma"
            evidence=IDA] EMBL:CP002688 GO:GO:0009570 EMBL:AB011474
            Gene3D:3.40.50.620 InterPro:IPR014729 EMBL:AY085020 IPI:IPI00540181
            RefSeq:NP_569028.1 UniGene:At.43271 ProteinModelPortal:Q9FKX3
            SMR:Q9FKX3 PRIDE:Q9FKX3 EnsemblPlants:AT5G66090.1 GeneID:836741
            KEGG:ath:AT5G66090 TAIR:At5g66090 InParanoid:Q9FKX3 OMA:KHVDANL
            PhylomeDB:Q9FKX3 ProtClustDB:CLSN2690091 Genevestigator:Q9FKX3
            Uniprot:Q9FKX3
        Length = 210

 Score = 547 (197.6 bits), Expect = 8.0e-53, P = 8.0e-53
 Identities = 117/219 (53%), Positives = 145/219 (66%)

Query:     1 MAFAHYLTAVRPVPVVTSEQTKISILPXXXXXXXXXXXXXXXXXXXKARKLSLFPRFRRI 60
             MA AH + AV  +   + + T    LP                   + + LSL    R +
Sbjct:     1 MASAHSIAAVSVLDAASKQAT----LPSSSSSSSALYPLSSLRSKPRQQLLSL----RSV 52

Query:    61 GHKAKVKSPESEINS------VAEAFTNFKHLLLPITDQNPYLSEGTRQXXXXXXXXXKK 114
               K +VK+   E  +      V +AF+N KHLLLP+ D+NPYLSEGTRQ         KK
Sbjct:    53 ALKGRVKAQAKEAEASPSPVGVGDAFSNVKHLLLPVIDRNPYLSEGTRQAAATTTSLAKK 112

Query:   115 YGADITVVVIDERQKESLPEHENRLSSIRWHLSEGGFQEFRLLERLGEGSSKPTAIIGDV 174
             YGADITVVVIDE ++ES  EHE ++S+IRWHLSEGGF+EF+LLERLGEG  K TAIIG+V
Sbjct:   113 YGADITVVVIDEEKRESSSEHETQVSNIRWHLSEGGFEEFKLLERLGEGK-KATAIIGEV 171

Query:   175 ADELNLDLVIISMEAIHSKHVDANLLAEFIPCPVLLLPL 213
             ADEL ++LV++SMEAIHSK++DANLLAEFIPCPVLLLPL
Sbjct:   172 ADELKMELVVMSMEAIHSKYIDANLLAEFIPCPVLLLPL 210


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.319   0.136   0.387    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      213       185   0.00080  110 3  11 22  0.44    32
                                                     31  0.41    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  583 (62 KB)
  Total size of DFA:  140 KB (2087 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  15.99u 0.22s 16.21t   Elapsed:  00:00:01
  Total cpu time:  15.99u 0.22s 16.21t   Elapsed:  00:00:01
  Start:  Fri May 10 03:44:13 2013   End:  Fri May 10 03:44:14 2013

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