BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028129
(213 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P72817|Y1654_SYNY3 Universal stress protein Sll1654 OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=sll1654 PE=3 SV=1
Length = 157
Score = 38.1 bits (87), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 70/162 (43%), Gaps = 27/162 (16%)
Query: 67 KSPESEINSVAEAFTNFKHLLLPITDQNPYLSEGTRQAAATTAALAKKYGADITVVVIDE 126
+SP I + FK +L P+ S R AA A L K + + + ++ + E
Sbjct: 7 RSPNRAIGKSSGGVIMFKTILFPLDR-----SREARDAAQMVADLVKIHQSQLILLSVVE 61
Query: 127 RQKESLPEHENR-----------LSSIRWHLSEGGFQEFRLLERLGEGSSKPTAIIGDVA 175
+ +HE L + + S+ G + +ER G S I DVA
Sbjct: 62 KNPPG-QDHEAHGMDSPEAVAKLLEAAQAVFSQQGIAT-KTIEREGMASFT----ICDVA 115
Query: 176 DELNLDLVIISMEAIH--SKHVDANLLAEFI---PCPVLLLP 212
DE+N DL+++ + ++ V ++ A I PCPVL++P
Sbjct: 116 DEVNADLIVMGCRGLGLTTEGVAESVTARVINLSPCPVLVVP 157
>sp|Q8GY23|UPL1_ARATH E3 ubiquitin-protein ligase UPL1 OS=Arabidopsis thaliana GN=UPL1 PE=1
SV=3
Length = 3681
Score = 33.9 bits (76), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 25/47 (53%)
Query: 135 HENRLSSIRWHLSEGGFQEFRLLERLGEGSSKPTAIIGDVADELNLD 181
HENR+ +RW + G F++L R G G+ I + + +N+D
Sbjct: 2192 HENRVIEVRWREALDGLDHFQILGRSGGGNGFIDDITAEPFEGVNVD 2238
>sp|A8XPY4|BNIP3_CAEBR BNIP3 homolog OS=Caenorhabditis briggsae GN=dct-1 PE=3 SV=2
Length = 220
Score = 32.7 bits (73), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 39/75 (52%), Gaps = 10/75 (13%)
Query: 86 LLLPITDQNPYLSEGTRQAAATTAALAKKYGADITVVVIDERQKESLPEHENRLSSIRWH 145
+ P+T+ P +SE + A + +L DI +V+IDE+ K+S RLS +
Sbjct: 54 FITPMTESTPGMSESWVELAPSRTSLCS--SVDINMVIIDEKDKDS------RLSPVS-- 103
Query: 146 LSEGGFQEFRLLERL 160
+++ EF LE++
Sbjct: 104 IAQSPHVEFESLEQV 118
>sp|Q82UK8|HEMH_NITEU Ferrochelatase OS=Nitrosomonas europaea (strain ATCC 19718 / NBRC
14298) GN=hemH PE=3 SV=1
Length = 364
Score = 32.7 bits (73), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 23/41 (56%)
Query: 22 KISILPLFTSSSSSSSSVSTQSLFSKARKLSLFPRFRRIGH 62
+I +LPLF ++SS+ +FS+ RK+ P R + H
Sbjct: 138 RILVLPLFPQYAASSTGCVLDGVFSELRKMRNIPDIRTVRH 178
>sp|Q09969|BNIP3_CAEEL NIP3 homolog OS=Caenorhabditis elegans GN=dct-1 PE=1 SV=2
Length = 221
Score = 32.7 bits (73), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 44/84 (52%), Gaps = 12/84 (14%)
Query: 77 AEAFTNFKHLLLPITDQNPYLSEGTRQAAATTAALAKKYGADITVVVIDERQKESLPEHE 136
A+A +N + P+T+ P +SE + A + +L DI +V+IDE+ K+S
Sbjct: 49 AKAVSN--PFITPLTESTPGMSESWVELAPSRTSLCS--SVDINMVIIDEKDKDS----- 99
Query: 137 NRLSSIRWHLSEGGFQEFRLLERL 160
RLS + +++ EF LE++
Sbjct: 100 -RLSPV--SIAQSPHVEFESLEQV 120
>sp|Q54HY8|BCS1A_DICDI Probable mitochondrial chaperone BCS1-A OS=Dictyostelium discoideum
GN=bcs1la PE=3 SV=1
Length = 421
Score = 30.8 bits (68), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 55/95 (57%), Gaps = 6/95 (6%)
Query: 120 TVVVIDERQKESLPEHENRLSSIRWHLSEG-GFQEFRLLERLGEGSSKPTAIIGDVADEL 178
+V++ D+ + + + + ++ +++ W+ + G ++ LL GE + +++I +A EL
Sbjct: 188 SVILADDLKSKLIEDIKSFITNESWYRNRGIPYRRGYLL--YGEPGNGKSSLINAIAGEL 245
Query: 179 NLDLVIISMEA--IHSKHVDANLLAEFIPCPVLLL 211
NLD+ I+S+ + I K ++ +LL P +LL+
Sbjct: 246 NLDICIVSLSSKDIDDKQIN-HLLNNAPPKSILLI 279
>sp|A1KV60|Y1568_NEIMF UPF0210 protein NMC1568 OS=Neisseria meningitidis serogroup C /
serotype 2a (strain ATCC 700532 / FAM18) GN=NMC1568 PE=3
SV=1
Length = 451
Score = 30.8 bits (68), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 39/85 (45%), Gaps = 8/85 (9%)
Query: 1 MAFAHYLTAVRPVPVVTSEQTKISILPL--FTSSSSSSSSVSTQSLFSKARK---LSLFP 55
+A A YL+A VP+V +IS+ P+ ++S + S VS KA K +S
Sbjct: 58 VATAKYLSAKYGVPIV---NQRISVTPIAQIAAASKADSYVSVAQTLDKAAKAIGVSFIG 114
Query: 56 RFRRIGHKAKVKSPESEINSVAEAF 80
F + K S E I S+ EA
Sbjct: 115 GFSALVQKGMSPSDEVLIRSIPEAM 139
>sp|A9M1M1|Y1554_NEIM0 UPF0210 protein NMCC_1554 OS=Neisseria meningitidis serogroup C
(strain 053442) GN=NMCC_1554 PE=3 SV=1
Length = 451
Score = 30.8 bits (68), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 39/85 (45%), Gaps = 8/85 (9%)
Query: 1 MAFAHYLTAVRPVPVVTSEQTKISILPL--FTSSSSSSSSVSTQSLFSKARK---LSLFP 55
+A A YL+A VP+V +IS+ P+ ++S + S VS KA K +S
Sbjct: 58 VATAKYLSAKYGVPIV---NQRISVTPIAQIAAASKADSYVSVAQTLDKAAKAIGVSFIG 114
Query: 56 RFRRIGHKAKVKSPESEINSVAEAF 80
F + K S E I S+ EA
Sbjct: 115 GFSALVQKGMSPSDEVLIRSIPEAM 139
>sp|Q9WYC4|Y288_THEMA Uncharacterized ABC transporter ATP-binding protein TM_0288
OS=Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM
3109 / JCM 10099) GN=TM_0288 PE=1 SV=1
Length = 598
Score = 30.4 bits (67), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 4/60 (6%)
Query: 90 ITDQNPYLSEGTRQAAATTAALAKKYGADITVVVIDERQKESLPEHENRLSSIRWHLSEG 149
+TD LS+G RQ A T A + A+ ++++DE + E + + W L EG
Sbjct: 485 LTDNGEDLSQGQRQLLAITRA----FLANPKILILDEATSNVDTKTEKSIQAAMWKLMEG 540
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.131 0.361
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 70,279,915
Number of Sequences: 539616
Number of extensions: 2651549
Number of successful extensions: 11522
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 11505
Number of HSP's gapped (non-prelim): 31
length of query: 213
length of database: 191,569,459
effective HSP length: 113
effective length of query: 100
effective length of database: 130,592,851
effective search space: 13059285100
effective search space used: 13059285100
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)