Query 028129
Match_columns 213
No_of_seqs 278 out of 1394
Neff 7.2
Searched_HMMs 46136
Date Fri Mar 29 06:42:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028129.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028129hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK15456 universal stress prot 99.9 1.1E-20 2.5E-25 147.0 15.5 120 82-212 1-142 (142)
2 PRK15005 universal stress prot 99.9 2.5E-20 5.4E-25 144.6 15.5 124 82-212 1-144 (144)
3 PRK15118 universal stress glob 99.8 5.4E-20 1.2E-24 143.2 14.4 123 81-213 1-139 (144)
4 PRK09982 universal stress prot 99.8 7.6E-20 1.6E-24 142.9 13.4 120 82-213 2-139 (142)
5 cd01989 STK_N The N-terminal d 99.8 5.9E-19 1.3E-23 137.3 14.3 119 85-212 1-144 (146)
6 PRK10116 universal stress prot 99.8 2.8E-18 6.1E-23 132.9 15.2 123 82-213 2-139 (142)
7 PF00582 Usp: Universal stress 99.8 4.3E-18 9.4E-23 128.2 13.5 121 82-212 1-140 (140)
8 cd01988 Na_H_Antiporter_C The 99.8 2.1E-17 4.6E-22 125.5 15.3 119 85-212 1-132 (132)
9 PRK11175 universal stress prot 99.7 2.6E-17 5.6E-22 142.8 14.1 152 48-212 121-299 (305)
10 cd01987 USP_OKCHK USP domain i 99.7 8.9E-17 1.9E-21 121.7 14.5 117 85-212 1-124 (124)
11 PRK11175 universal stress prot 99.7 7.7E-17 1.7E-21 139.8 14.3 122 81-212 1-145 (305)
12 cd00293 USP_Like Usp: Universa 99.6 3.2E-14 7E-19 106.0 15.2 117 85-211 1-130 (130)
13 COG0589 UspA Universal stress 99.5 3.1E-13 6.7E-18 104.2 15.2 124 81-212 3-151 (154)
14 PRK12652 putative monovalent c 99.5 1.7E-13 3.6E-18 122.6 14.0 101 80-190 2-124 (357)
15 PRK10490 sensor protein KdpD; 98.8 1E-07 2.3E-12 94.7 15.6 122 80-212 247-373 (895)
16 COG2205 KdpD Osmosensitive K+ 98.4 6.8E-06 1.5E-10 79.6 13.1 123 79-212 244-373 (890)
17 cd01984 AANH_like Adenine nucl 97.7 0.00022 4.8E-09 50.4 7.9 79 86-210 1-85 (86)
18 TIGR02432 lysidine_TilS_N tRNA 96.7 0.056 1.2E-06 43.6 12.7 97 85-190 1-110 (189)
19 PRK12342 hypothetical protein; 96.1 0.058 1.2E-06 46.5 9.7 103 97-209 33-140 (254)
20 PF01012 ETF: Electron transfe 96.1 0.048 1E-06 43.2 8.6 110 86-208 2-117 (164)
21 cd01992 PP-ATPase N-terminal d 95.9 0.23 5E-06 39.7 12.0 97 85-190 1-107 (185)
22 PLN03159 cation/H(+) antiporte 95.9 0.074 1.6E-06 53.1 10.6 69 52-125 594-667 (832)
23 cd01985 ETF The electron trans 95.8 0.38 8.3E-06 38.7 12.8 111 85-208 1-118 (181)
24 PF01171 ATP_bind_3: PP-loop f 95.7 0.38 8.2E-06 38.8 12.6 98 85-190 1-107 (182)
25 PRK03359 putative electron tra 95.6 0.13 2.7E-06 44.4 9.6 104 97-209 34-143 (256)
26 PLN03159 cation/H(+) antiporte 95.1 0.43 9.4E-06 47.7 13.2 46 166-211 557-613 (832)
27 cd01993 Alpha_ANH_like_II This 94.1 1.4 3E-05 35.0 11.7 97 85-189 1-116 (185)
28 COG2086 FixA Electron transfer 93.5 0.57 1.2E-05 40.5 8.9 102 97-208 35-141 (260)
29 cd01715 ETF_alpha The electron 91.3 6.3 0.00014 31.2 11.8 103 85-208 1-110 (168)
30 COG0037 MesJ tRNA(Ile)-lysidin 89.7 9 0.00019 32.9 12.2 97 84-190 22-131 (298)
31 COG0299 PurN Folate-dependent 89.5 3 6.4E-05 34.6 8.4 88 84-188 1-88 (200)
32 COG0041 PurE Phosphoribosylcar 88.3 3.6 7.9E-05 32.8 7.9 70 137-213 16-88 (162)
33 TIGR00591 phr2 photolyase PhrI 87.2 5.8 0.00013 36.7 9.9 85 97-188 33-122 (454)
34 cd01714 ETF_beta The electron 87.2 15 0.00033 30.2 12.1 100 97-207 33-137 (202)
35 TIGR01162 purE phosphoribosyla 86.9 7.4 0.00016 31.1 9.0 70 137-213 12-84 (156)
36 PRK10696 tRNA 2-thiocytidine b 86.3 17 0.00036 31.0 11.7 95 83-190 29-142 (258)
37 PRK05253 sulfate adenylyltrans 85.4 12 0.00026 33.0 10.5 97 81-190 25-138 (301)
38 PLN00200 argininosuccinate syn 83.8 26 0.00057 32.3 12.3 96 81-190 3-124 (404)
39 PF00731 AIRC: AIR carboxylase 83.7 11 0.00024 29.9 8.6 69 137-212 14-85 (150)
40 COG0541 Ffh Signal recognition 83.3 33 0.00071 32.0 12.6 96 85-200 103-201 (451)
41 PRK13820 argininosuccinate syn 82.9 27 0.00058 32.1 12.0 94 82-190 1-120 (394)
42 PRK07313 phosphopantothenoylcy 82.3 14 0.0003 30.1 9.0 35 83-123 1-35 (182)
43 TIGR00268 conserved hypothetic 82.3 24 0.00053 29.9 10.9 96 79-189 8-117 (252)
44 PF00875 DNA_photolyase: DNA p 81.2 17 0.00036 28.5 8.9 77 101-188 13-97 (165)
45 COG1184 GCD2 Translation initi 79.8 16 0.00035 32.3 9.0 91 98-211 129-227 (301)
46 PF02844 GARS_N: Phosphoribosy 79.8 1.8 3.8E-05 32.1 2.6 23 167-189 50-72 (100)
47 PF00072 Response_reg: Respons 79.3 14 0.00031 25.9 7.4 65 139-211 11-77 (112)
48 PF13167 GTP-bdg_N: GTP-bindin 79.1 19 0.0004 26.3 7.8 69 135-209 6-84 (95)
49 KOG1467 Translation initiation 78.7 28 0.0006 32.9 10.5 99 85-211 361-467 (556)
50 PRK08335 translation initiatio 78.1 22 0.00047 31.0 9.3 83 110-211 127-217 (275)
51 TIGR02113 coaC_strep phosphopa 76.4 21 0.00046 28.9 8.3 34 84-123 1-34 (177)
52 PRK05772 translation initiatio 76.4 19 0.00041 32.7 8.7 87 109-211 192-286 (363)
53 PRK05720 mtnA methylthioribose 75.9 18 0.00039 32.6 8.4 59 143-211 199-265 (344)
54 PRK08535 translation initiatio 75.2 32 0.0007 30.3 9.8 79 114-211 142-228 (310)
55 PRK08334 translation initiatio 74.7 26 0.00056 31.8 9.0 59 143-211 212-278 (356)
56 PRK13010 purU formyltetrahydro 74.6 21 0.00045 31.3 8.3 89 82-190 92-180 (289)
57 TIGR02039 CysD sulfate adenyly 74.6 47 0.001 29.3 10.5 96 81-189 17-129 (294)
58 PF01008 IF-2B: Initiation fac 74.2 15 0.00032 31.6 7.3 89 105-211 120-216 (282)
59 PRK13982 bifunctional SbtC-lik 74.2 74 0.0016 30.0 12.3 37 82-124 69-105 (475)
60 TIGR00511 ribulose_e2b2 ribose 73.8 33 0.00071 30.2 9.4 79 114-211 137-223 (301)
61 TIGR00512 salvage_mtnA S-methy 73.6 24 0.00053 31.6 8.6 59 143-211 199-265 (331)
62 PRK00211 sulfur relay protein 73.5 9.9 0.00022 28.7 5.3 42 83-126 1-42 (119)
63 PF00448 SRP54: SRP54-type pro 73.0 50 0.0011 27.0 11.4 81 97-190 11-94 (196)
64 PRK06371 translation initiatio 73.0 28 0.00062 31.1 8.8 59 143-211 189-255 (329)
65 TIGR00524 eIF-2B_rel eIF-2B al 72.6 21 0.00046 31.5 7.9 59 143-211 171-237 (303)
66 PRK00509 argininosuccinate syn 72.2 76 0.0016 29.2 11.6 93 83-190 2-120 (399)
67 PF02601 Exonuc_VII_L: Exonucl 72.2 19 0.00041 31.5 7.6 51 159-210 49-112 (319)
68 PRK06027 purU formyltetrahydro 72.0 28 0.0006 30.4 8.5 90 81-190 87-176 (286)
69 PRK11070 ssDNA exonuclease Rec 71.9 40 0.00087 32.5 10.2 98 79-190 65-162 (575)
70 cd01995 ExsB ExsB is a transcr 71.5 46 0.001 25.9 10.3 86 85-190 1-87 (169)
71 TIGR00655 PurU formyltetrahydr 71.5 28 0.00061 30.3 8.4 89 82-190 83-171 (280)
72 COG0552 FtsY Signal recognitio 71.3 79 0.0017 28.5 12.1 91 82-190 139-232 (340)
73 PRK09860 putative alcohol dehy 69.7 73 0.0016 28.8 11.0 76 104-187 18-97 (383)
74 cd01713 PAPS_reductase This do 69.1 48 0.001 25.1 10.0 22 169-190 95-116 (173)
75 COG1597 LCB5 Sphingosine kinas 69.1 43 0.00093 29.3 9.1 70 135-212 18-90 (301)
76 cd01990 Alpha_ANH_like_I This 68.8 60 0.0013 26.1 10.4 24 167-190 83-106 (202)
77 PRK08091 ribulose-phosphate 3- 68.5 73 0.0016 27.0 10.2 46 137-188 164-209 (228)
78 PRK10660 tilS tRNA(Ile)-lysidi 68.2 63 0.0014 29.9 10.4 65 80-152 12-77 (436)
79 PRK11914 diacylglycerol kinase 67.3 38 0.00083 29.3 8.4 11 82-92 7-17 (306)
80 TIGR03556 photolyase_8HDF deox 66.8 61 0.0013 30.2 10.1 80 98-188 12-99 (471)
81 cd01986 Alpha_ANH_like Adenine 65.8 46 0.001 23.7 8.5 72 86-190 1-72 (103)
82 PRK10867 signal recognition pa 65.8 1.2E+02 0.0025 28.3 12.5 82 97-190 110-194 (433)
83 PRK06036 translation initiatio 65.4 67 0.0014 28.9 9.6 59 143-211 200-265 (339)
84 cd08176 LPO Lactadehyde:propan 64.6 68 0.0015 28.8 9.7 46 139-187 45-94 (377)
85 PRK15454 ethanol dehydrogenase 64.3 44 0.00095 30.4 8.5 85 81-185 25-112 (395)
86 COG1606 ATP-utilizing enzymes 64.1 98 0.0021 26.9 10.0 94 79-188 13-122 (269)
87 PRK08745 ribulose-phosphate 3- 64.0 88 0.0019 26.3 10.1 45 138-188 157-201 (223)
88 PRK12563 sulfate adenylyltrans 63.9 92 0.002 27.7 10.1 96 82-190 36-148 (312)
89 TIGR02765 crypto_DASH cryptoch 63.1 91 0.002 28.5 10.4 80 98-188 12-105 (429)
90 COG1066 Sms Predicted ATP-depe 62.8 1.2E+02 0.0027 28.3 10.8 107 84-211 94-216 (456)
91 PRK10481 hypothetical protein; 62.7 95 0.002 26.3 9.7 43 167-211 167-212 (224)
92 PRK02261 methylaspartate mutas 62.5 47 0.001 25.6 7.2 40 144-189 25-64 (137)
93 PRK05579 bifunctional phosphop 62.4 1.1E+02 0.0024 28.0 10.7 36 82-123 5-40 (399)
94 COG0420 SbcD DNA repair exonuc 61.8 18 0.00038 32.6 5.4 47 166-212 27-82 (390)
95 PLN02331 phosphoribosylglycina 61.6 93 0.002 25.8 9.7 86 85-190 1-89 (207)
96 cd01712 ThiI ThiI is required 60.8 81 0.0017 24.8 11.8 94 85-189 1-113 (177)
97 PRK14057 epimerase; Provisiona 60.1 1.1E+02 0.0025 26.3 10.0 46 137-188 178-223 (254)
98 PRK06029 3-octaprenyl-4-hydrox 59.1 23 0.00051 28.9 5.2 37 83-124 1-37 (185)
99 cd02072 Glm_B12_BD B12 binding 58.5 22 0.00048 27.4 4.7 39 144-188 21-59 (128)
100 cd00950 DHDPS Dihydrodipicolin 58.5 1.2E+02 0.0025 26.0 10.8 44 167-211 83-132 (284)
101 cd08189 Fe-ADH5 Iron-containin 58.4 93 0.002 27.9 9.4 46 139-187 43-92 (374)
102 PLN02948 phosphoribosylaminoim 58.3 65 0.0014 31.0 8.8 71 137-213 424-496 (577)
103 PRK00286 xseA exodeoxyribonucl 58.2 25 0.00054 32.4 5.8 47 159-210 170-229 (438)
104 TIGR00342 thiazole biosynthesi 58.1 1.4E+02 0.0031 26.9 11.7 97 83-189 172-285 (371)
105 PRK13011 formyltetrahydrofolat 57.7 56 0.0012 28.6 7.6 89 82-190 88-176 (286)
106 PRK14665 mnmA tRNA-specific 2- 57.4 1.5E+02 0.0032 26.8 12.5 97 82-190 4-124 (360)
107 cd02071 MM_CoA_mut_B12_BD meth 57.0 46 0.001 24.8 6.2 40 144-189 21-60 (122)
108 TIGR02638 lactal_redase lactal 56.9 82 0.0018 28.4 8.8 46 139-187 46-95 (379)
109 PF07302 AroM: AroM protein; 56.8 84 0.0018 26.6 8.2 43 168-212 164-209 (221)
110 cd00408 DHDPS-like Dihydrodipi 56.7 1.2E+02 0.0027 25.7 11.1 118 86-211 5-129 (281)
111 PRK09590 celB cellobiose phosp 56.6 61 0.0013 23.9 6.6 64 139-212 18-82 (104)
112 COG0745 OmpR Response regulato 56.5 1.1E+02 0.0024 25.6 9.0 63 139-211 13-78 (229)
113 PRK13398 3-deoxy-7-phosphohept 55.7 1.4E+02 0.0029 25.9 12.0 100 98-210 37-139 (266)
114 TIGR00959 ffh signal recogniti 55.7 1.7E+02 0.0038 27.1 11.4 82 97-190 109-193 (428)
115 TIGR01501 MthylAspMutase methy 55.4 32 0.0007 26.7 5.1 41 143-189 22-62 (134)
116 PRK10624 L-1,2-propanediol oxi 54.4 1.1E+02 0.0023 27.6 9.2 76 104-187 17-96 (382)
117 COG0036 Rpe Pentose-5-phosphat 53.8 93 0.002 26.3 8.0 45 137-188 155-199 (220)
118 PRK09722 allulose-6-phosphate 53.7 1.4E+02 0.003 25.3 10.2 46 137-188 154-199 (229)
119 COG2201 CheB Chemotaxis respon 53.6 80 0.0017 28.6 8.0 45 167-211 35-80 (350)
120 PRK05973 replicative DNA helic 53.0 1.4E+02 0.0031 25.3 10.0 138 57-211 38-189 (237)
121 cd06361 PBP1_GPC6A_like Ligand 52.8 1.8E+02 0.0038 26.3 12.5 99 82-190 171-269 (403)
122 PRK14664 tRNA-specific 2-thiou 52.3 1.8E+02 0.004 26.3 12.0 91 83-190 5-119 (362)
123 PF02670 DXP_reductoisom: 1-de 51.7 77 0.0017 24.4 6.7 44 160-209 75-118 (129)
124 TIGR00853 pts-lac PTS system, 51.4 55 0.0012 23.6 5.6 62 139-212 20-82 (95)
125 TIGR00032 argG argininosuccina 51.2 2E+02 0.0043 26.4 11.5 91 85-190 1-117 (394)
126 cd00951 KDGDH 5-dehydro-4-deox 50.9 1.6E+02 0.0035 25.4 11.3 107 100-211 18-131 (289)
127 TIGR00640 acid_CoA_mut_C methy 50.9 34 0.00074 26.3 4.6 41 143-189 23-63 (132)
128 cd08194 Fe-ADH6 Iron-containin 50.8 1.8E+02 0.0039 26.1 10.0 46 138-186 39-88 (375)
129 PRK00143 mnmA tRNA-specific 2- 50.5 1.9E+02 0.004 25.9 12.0 23 168-190 105-127 (346)
130 KOG2310 DNA repair exonuclease 50.5 14 0.0003 35.4 2.7 22 167-188 40-61 (646)
131 TIGR00237 xseA exodeoxyribonuc 50.4 43 0.00092 31.0 6.0 47 159-210 164-224 (432)
132 PLN02828 formyltetrahydrofolat 50.3 1.7E+02 0.0037 25.4 10.1 88 83-190 70-158 (268)
133 cd01997 GMP_synthase_C The C-t 50.2 1.7E+02 0.0038 25.6 9.5 91 85-189 1-110 (295)
134 PF02887 PK_C: Pyruvate kinase 49.8 38 0.00082 25.0 4.7 41 167-211 4-45 (117)
135 cd05564 PTS_IIB_chitobiose_lic 49.3 67 0.0015 23.0 5.8 62 139-212 16-78 (96)
136 PRK04527 argininosuccinate syn 49.0 1.6E+02 0.0036 27.1 9.4 94 83-190 2-120 (400)
137 PF13727 CoA_binding_3: CoA-bi 49.0 21 0.00045 27.5 3.2 44 168-212 130-175 (175)
138 COG0615 TagD Cytidylyltransfer 48.9 34 0.00073 26.9 4.3 33 156-190 65-97 (140)
139 COG1058 CinA Predicted nucleot 48.8 86 0.0019 27.1 7.2 65 137-207 21-89 (255)
140 COG1454 EutG Alcohol dehydroge 48.5 1.9E+02 0.0041 26.4 9.7 82 83-185 7-92 (377)
141 PRK13057 putative lipid kinase 47.4 1.1E+02 0.0024 26.2 7.9 65 139-212 15-81 (287)
142 PRK12755 phospho-2-dehydro-3-d 47.3 1.5E+02 0.0032 26.9 8.7 112 84-210 53-186 (353)
143 KOG0781 Signal recognition par 47.0 1.9E+02 0.0041 27.7 9.5 92 81-190 377-477 (587)
144 KOG1466 Translation initiation 46.8 2E+02 0.0044 25.2 9.7 84 109-211 147-238 (313)
145 PRK13964 coaD phosphopantethei 46.7 1.4E+02 0.003 23.3 9.4 81 97-190 13-93 (140)
146 PF10087 DUF2325: Uncharacteri 45.7 1E+02 0.0023 21.9 6.3 66 139-212 12-82 (97)
147 TIGR01425 SRP54_euk signal rec 45.4 2.6E+02 0.0056 26.1 11.6 81 97-190 110-193 (429)
148 cd08550 GlyDH-like Glycerol_de 45.1 2.2E+02 0.0048 25.2 10.6 16 169-184 67-82 (349)
149 PF01596 Methyltransf_3: O-met 44.9 51 0.0011 27.3 5.1 114 51-188 8-130 (205)
150 PRK03170 dihydrodipicolinate s 44.8 2E+02 0.0044 24.7 11.4 118 86-211 9-133 (292)
151 cd08192 Fe-ADH7 Iron-containin 44.8 1.4E+02 0.0031 26.6 8.4 46 139-187 41-90 (370)
152 cd00578 L-fuc_L-ara-isomerases 44.4 1.1E+02 0.0023 28.3 7.7 18 170-187 54-71 (452)
153 PRK09468 ompR osmolarity respo 44.2 1.6E+02 0.0036 23.5 9.1 42 170-211 40-83 (239)
154 TIGR03010 sulf_tusC_dsrF sulfu 44.1 64 0.0014 23.9 5.1 39 86-126 2-40 (116)
155 cd02067 B12-binding B12 bindin 43.6 78 0.0017 23.1 5.6 39 144-188 21-59 (119)
156 PRK00861 putative lipid kinase 43.5 1.8E+02 0.004 24.9 8.6 18 168-185 46-63 (300)
157 TIGR00715 precor6x_red precorr 43.4 1.7E+02 0.0037 25.1 8.2 63 145-212 166-230 (256)
158 PRK00109 Holliday junction res 43.2 80 0.0017 24.4 5.7 44 167-211 42-95 (138)
159 PF03652 UPF0081: Uncharacteri 43.2 34 0.00075 26.3 3.6 46 166-211 38-93 (135)
160 PRK05370 argininosuccinate syn 42.7 2.9E+02 0.0063 25.9 10.7 24 167-190 110-133 (447)
161 cd05565 PTS_IIB_lactose PTS_II 42.4 99 0.0021 22.6 5.7 62 139-212 17-79 (99)
162 cd08170 GlyDH Glycerol dehydro 42.4 2.4E+02 0.0052 24.9 11.8 15 170-184 68-82 (351)
163 PRK11173 two-component respons 41.6 1.8E+02 0.0039 23.3 8.0 44 168-211 36-80 (237)
164 PRK12555 chemotaxis-specific m 41.6 2.4E+02 0.0052 24.6 9.3 42 170-211 37-79 (337)
165 PLN02476 O-methyltransferase 41.0 1.6E+02 0.0036 25.6 7.8 46 139-189 156-204 (278)
166 KOG0780 Signal recognition par 40.8 2.1E+02 0.0046 26.7 8.7 88 86-191 105-195 (483)
167 TIGR03249 KdgD 5-dehydro-4-deo 40.8 2.4E+02 0.0052 24.4 11.3 108 99-211 22-136 (296)
168 COG0415 PhrB Deoxyribodipyrimi 40.7 1.8E+02 0.0038 27.5 8.4 80 99-188 14-99 (461)
169 TIGR00884 guaA_Cterm GMP synth 40.5 2.6E+02 0.0056 24.7 11.4 93 84-189 17-127 (311)
170 PRK13337 putative lipid kinase 40.4 2.4E+02 0.0052 24.3 9.4 17 169-185 47-63 (304)
171 PRK10816 DNA-binding transcrip 40.2 1.8E+02 0.004 22.8 7.8 62 141-211 15-78 (223)
172 COG1831 Predicted metal-depend 40.1 2.6E+02 0.0056 24.6 9.2 84 99-185 100-192 (285)
173 TIGR02855 spore_yabG sporulati 40.0 1.3E+02 0.0027 26.5 6.8 49 137-189 115-163 (283)
174 cd01974 Nitrogenase_MoFe_beta 40.0 3E+02 0.0065 25.3 10.8 84 83-190 303-388 (435)
175 PRK13054 lipid kinase; Reviewe 39.8 2.5E+02 0.0053 24.2 9.1 17 169-185 46-62 (300)
176 COG3340 PepE Peptidase E [Amin 39.7 2.3E+02 0.0051 24.0 9.7 79 97-187 13-92 (224)
177 PRK12857 fructose-1,6-bisphosp 39.6 1.3E+02 0.0029 26.2 7.1 62 145-210 12-79 (284)
178 PRK12361 hypothetical protein; 39.6 2.2E+02 0.0048 27.0 9.1 43 167-213 285-329 (547)
179 PRK05920 aromatic acid decarbo 39.5 75 0.0016 26.4 5.3 36 82-123 2-37 (204)
180 COG2102 Predicted ATPases of P 39.5 2.4E+02 0.0051 23.9 10.0 85 97-188 9-95 (223)
181 PF05582 Peptidase_U57: YabG p 39.5 1.2E+02 0.0027 26.6 6.7 48 137-188 116-163 (287)
182 PRK10653 D-ribose transporter 39.4 1.9E+02 0.004 24.3 8.0 18 170-187 98-115 (295)
183 PRK15411 rcsA colanic acid cap 39.4 1.9E+02 0.0041 23.5 7.7 42 168-211 36-83 (207)
184 TIGR01286 nifK nitrogenase mol 39.2 3.5E+02 0.0075 25.7 11.7 98 82-209 362-459 (515)
185 cd01537 PBP1_Repressors_Sugar_ 39.0 2E+02 0.0043 22.9 8.9 17 172-188 72-88 (264)
186 PRK05647 purN phosphoribosylgl 38.9 2.2E+02 0.0047 23.4 8.1 89 84-189 2-90 (200)
187 PF02568 ThiI: Thiamine biosyn 38.3 2.3E+02 0.0049 23.4 8.0 93 85-188 5-117 (197)
188 KOG1650 Predicted K+/H+-antipo 38.3 1.2E+02 0.0025 30.5 7.2 38 83-125 614-651 (769)
189 COG0151 PurD Phosphoribosylami 38.3 30 0.00066 32.0 2.9 23 167-189 51-73 (428)
190 PF00148 Oxidored_nitro: Nitro 38.2 2.9E+02 0.0063 24.6 9.6 81 83-189 271-351 (398)
191 PRK02929 L-arabinose isomerase 37.7 3.6E+02 0.0079 25.6 10.3 45 167-212 56-104 (499)
192 PRK06372 translation initiatio 37.7 1E+02 0.0023 26.5 6.0 59 141-211 125-191 (253)
193 PRK06806 fructose-bisphosphate 37.6 1.8E+02 0.004 25.3 7.6 62 145-210 12-79 (281)
194 PF00793 DAHP_synth_1: DAHP sy 37.0 2.8E+02 0.006 24.0 9.3 100 99-210 27-136 (270)
195 cd03364 TOPRIM_DnaG_primases T 36.9 1.3E+02 0.0027 20.4 5.4 35 83-122 43-77 (79)
196 PRK10046 dpiA two-component re 36.8 2.3E+02 0.0049 22.9 9.7 42 170-211 41-84 (225)
197 PRK13856 two-component respons 36.5 2.3E+02 0.0049 22.8 9.3 42 170-211 36-78 (241)
198 TIGR00583 mre11 DNA repair pro 36.5 86 0.0019 28.9 5.6 21 167-187 30-50 (405)
199 PLN02589 caffeoyl-CoA O-methyl 36.5 2E+02 0.0044 24.5 7.6 45 140-189 118-166 (247)
200 TIGR00250 RNAse_H_YqgF RNAse H 36.5 95 0.002 23.7 5.1 44 167-211 36-89 (130)
201 COG1646 Predicted phosphate-bi 36.3 2E+02 0.0044 24.6 7.4 45 167-212 29-77 (240)
202 PF10649 DUF2478: Protein of u 36.2 74 0.0016 25.5 4.5 42 170-211 84-129 (159)
203 PRK08883 ribulose-phosphate 3- 36.1 2.6E+02 0.0056 23.3 9.9 46 137-188 152-197 (220)
204 PRK10161 transcriptional regul 36.0 2.2E+02 0.0047 22.5 7.9 43 169-211 36-82 (229)
205 PRK12738 kbaY tagatose-bisphos 36.0 1.8E+02 0.0038 25.5 7.3 61 146-210 13-79 (286)
206 PRK11083 DNA-binding response 35.9 2.1E+02 0.0046 22.3 7.6 42 170-211 38-81 (228)
207 PRK15347 two component system 35.7 2E+02 0.0043 28.6 8.5 63 140-211 704-772 (921)
208 cd08185 Fe-ADH1 Iron-containin 35.6 3.3E+02 0.0071 24.4 9.6 47 138-187 42-92 (380)
209 PRK06801 hypothetical protein; 35.6 1.9E+02 0.0041 25.3 7.4 62 145-210 12-79 (286)
210 cd01971 Nitrogenase_VnfN_like 35.6 3.5E+02 0.0076 24.7 11.6 86 83-190 293-382 (427)
211 cd00954 NAL N-Acetylneuraminic 35.5 2.9E+02 0.0062 23.7 10.9 43 169-211 86-134 (288)
212 PF00532 Peripla_BP_1: Peripla 35.5 2.8E+02 0.006 23.5 9.1 75 99-188 14-88 (279)
213 COG4126 Hydantoin racemase [Am 35.4 1.9E+02 0.0041 24.6 7.0 39 167-208 162-200 (230)
214 cd03557 L-arabinose_isomerase 35.4 2.4E+02 0.0051 26.7 8.5 45 167-212 50-98 (484)
215 PRK11107 hybrid sensory histid 35.1 2.6E+02 0.0056 27.7 9.2 62 141-211 682-747 (919)
216 PF02441 Flavoprotein: Flavopr 35.1 57 0.0012 24.5 3.6 34 84-123 1-34 (129)
217 PRK04147 N-acetylneuraminate l 34.8 3E+02 0.0064 23.7 11.1 43 169-211 89-136 (293)
218 COG2204 AtoC Response regulato 34.8 3.1E+02 0.0066 25.9 9.0 10 179-188 48-57 (464)
219 TIGR00683 nanA N-acetylneurami 34.7 3E+02 0.0065 23.7 11.6 44 167-211 84-134 (290)
220 PLN02781 Probable caffeoyl-CoA 34.6 2.5E+02 0.0055 23.4 7.9 44 139-187 106-152 (234)
221 PRK12737 gatY tagatose-bisphos 34.6 1.8E+02 0.0038 25.5 7.1 62 145-210 12-79 (284)
222 cd08193 HVD 5-hydroxyvalerate 34.5 2.4E+02 0.0053 25.2 8.2 44 139-185 43-89 (376)
223 PLN02285 methionyl-tRNA formyl 34.4 1.8E+02 0.0039 25.9 7.2 22 169-190 83-104 (334)
224 PRK10674 deoxyribodipyrimidine 34.0 3.6E+02 0.0078 25.1 9.5 84 97-188 12-105 (472)
225 cd08186 Fe-ADH8 Iron-containin 33.9 2.7E+02 0.0059 25.0 8.5 43 139-184 44-89 (383)
226 TIGR01858 tag_bisphos_ald clas 33.9 1.9E+02 0.0041 25.3 7.1 62 145-210 10-77 (282)
227 cd08187 BDH Butanol dehydrogen 33.8 3E+02 0.0064 24.7 8.7 46 139-187 46-95 (382)
228 COG1201 Lhr Lhr-like helicases 33.7 2.8E+02 0.0061 28.1 9.0 118 52-185 7-129 (814)
229 cd06315 PBP1_ABC_sugar_binding 33.6 2.3E+02 0.005 23.5 7.6 16 172-187 74-89 (280)
230 PRK00919 GMP synthase subunit 33.5 3.4E+02 0.0074 24.0 11.5 90 84-188 22-128 (307)
231 PRK09423 gldA glycerol dehydro 33.4 3.5E+02 0.0076 24.1 11.6 9 179-187 108-116 (366)
232 COG2262 HflX GTPases [General 33.4 3.6E+02 0.0077 25.1 9.0 50 136-188 19-78 (411)
233 TIGR03590 PseG pseudaminic aci 33.4 3.1E+02 0.0066 23.4 13.1 90 85-190 1-91 (279)
234 TIGR02154 PhoB phosphate regul 33.3 2.3E+02 0.005 22.0 7.9 43 169-211 36-82 (226)
235 PRK10701 DNA-binding transcrip 33.2 2.5E+02 0.0055 22.4 9.4 17 172-188 38-54 (240)
236 TIGR02313 HpaI-NOT-DapA 2,4-di 33.1 3.2E+02 0.007 23.6 11.0 44 168-211 84-133 (294)
237 PHA02546 47 endonuclease subun 33.0 1E+02 0.0022 27.3 5.5 21 167-187 27-47 (340)
238 PRK09195 gatY tagatose-bisphos 33.0 1.9E+02 0.0041 25.3 7.0 54 156-210 20-79 (284)
239 cd08190 HOT Hydroxyacid-oxoaci 32.7 2.6E+02 0.0057 25.5 8.2 44 139-185 40-86 (414)
240 TIGR00674 dapA dihydrodipicoli 32.7 3.2E+02 0.0069 23.4 11.1 42 169-211 83-130 (285)
241 TIGR01387 cztR_silR_copR heavy 32.2 2.4E+02 0.0051 21.8 7.9 43 169-211 32-76 (218)
242 PF13662 Toprim_4: Toprim doma 32.2 95 0.0021 21.1 4.1 33 83-120 46-78 (81)
243 PF03808 Glyco_tran_WecB: Glyc 31.9 2.6E+02 0.0056 22.1 8.4 23 167-189 89-111 (172)
244 TIGR00559 pdxJ pyridoxine 5'-p 31.9 2E+02 0.0044 24.6 6.7 45 135-187 108-152 (237)
245 TIGR02634 xylF D-xylose ABC tr 31.8 3.1E+02 0.0066 23.3 8.1 77 98-188 10-88 (302)
246 PF00781 DAGK_cat: Diacylglyce 31.8 2.1E+02 0.0046 21.1 7.4 65 140-212 18-89 (130)
247 COG0683 LivK ABC-type branched 31.7 3.6E+02 0.0079 23.8 10.5 80 103-190 134-214 (366)
248 PF07476 MAAL_C: Methylasparta 31.7 3.3E+02 0.0072 23.3 9.5 86 99-190 86-172 (248)
249 PF02310 B12-binding: B12 bind 31.6 2E+02 0.0042 20.7 6.1 21 167-187 39-59 (121)
250 TIGR00930 2a30 K-Cl cotranspor 31.6 5.3E+02 0.012 26.6 10.8 94 85-189 577-677 (953)
251 PRK05234 mgsA methylglyoxal sy 31.6 2.5E+02 0.0054 21.8 8.4 76 82-187 3-83 (142)
252 cd01994 Alpha_ANH_like_IV This 31.4 2.9E+02 0.0062 22.5 10.3 92 85-189 1-98 (194)
253 PF01933 UPF0052: Uncharacteri 31.4 73 0.0016 28.1 4.2 43 166-211 172-221 (300)
254 COG1570 XseA Exonuclease VII, 31.3 1.4E+02 0.003 27.9 6.1 46 159-209 170-229 (440)
255 COG2876 AroA 3-deoxy-D-arabino 31.1 2.2E+02 0.0047 25.0 6.8 103 98-212 54-159 (286)
256 PRK06988 putative formyltransf 30.2 2.6E+02 0.0056 24.6 7.5 43 141-190 46-88 (312)
257 TIGR00639 PurN phosphoribosylg 30.2 3E+02 0.0065 22.4 9.8 89 85-190 2-90 (190)
258 TIGR01284 alt_nitrog_alph nitr 30.2 4.5E+02 0.0098 24.4 11.2 83 82-190 324-406 (457)
259 cd06294 PBP1_ycjW_transcriptio 30.1 3E+02 0.0064 22.3 8.7 73 102-188 20-92 (270)
260 cd06282 PBP1_GntR_like_2 Ligan 30.1 2.9E+02 0.0063 22.2 9.1 78 98-188 11-88 (266)
261 cd01545 PBP1_SalR Ligand-bindi 30.1 3E+02 0.0064 22.2 9.6 76 101-188 14-89 (270)
262 PF00834 Ribul_P_3_epim: Ribul 30.0 1.6E+02 0.0034 24.3 5.7 45 137-187 151-195 (201)
263 PRK00207 sulfur transfer compl 29.8 1.8E+02 0.0039 22.0 5.7 40 85-126 2-42 (128)
264 PRK08576 hypothetical protein; 29.7 4.7E+02 0.01 24.4 10.3 88 85-189 236-340 (438)
265 PRK10643 DNA-binding transcrip 29.7 2.7E+02 0.0058 21.6 9.0 17 172-188 37-53 (222)
266 cd00003 PNPsynthase Pyridoxine 29.7 2.3E+02 0.005 24.2 6.7 45 135-187 108-152 (234)
267 PF14582 Metallophos_3: Metall 29.7 1.1E+02 0.0023 26.4 4.6 21 166-186 19-39 (255)
268 PRK05437 isopentenyl pyrophosp 29.5 3.3E+02 0.0072 24.4 8.2 49 135-189 171-220 (352)
269 cd08181 PPD-like 1,3-propanedi 29.5 3.3E+02 0.0071 24.2 8.1 17 169-185 73-89 (357)
270 cd06533 Glyco_transf_WecG_TagA 29.5 2.3E+02 0.0049 22.5 6.4 23 167-189 87-109 (171)
271 COG0761 lytB 4-Hydroxy-3-methy 29.3 2.5E+02 0.0054 24.8 7.0 87 100-190 15-125 (294)
272 cd06267 PBP1_LacI_sugar_bindin 29.2 2.9E+02 0.0063 21.9 8.3 17 172-188 71-87 (264)
273 cd07044 CofD_YvcK Family of Co 29.2 46 0.001 29.5 2.5 44 166-212 163-213 (309)
274 PF01729 QRPTase_C: Quinolinat 29.2 2E+02 0.0044 23.0 6.1 29 156-187 128-156 (169)
275 PRK08673 3-deoxy-7-phosphohept 29.1 4.2E+02 0.0092 23.7 11.2 101 98-211 103-206 (335)
276 PRK05265 pyridoxine 5'-phospha 28.9 2.3E+02 0.005 24.3 6.6 44 135-186 111-154 (239)
277 PRK15029 arginine decarboxylas 28.9 6E+02 0.013 25.6 10.4 64 139-211 21-91 (755)
278 PF03740 PdxJ: Pyridoxal phosp 28.5 2.3E+02 0.0049 24.3 6.5 45 135-187 109-153 (239)
279 TIGR00420 trmU tRNA (5-methyla 28.5 4.3E+02 0.0094 23.7 12.4 21 169-189 106-127 (352)
280 PRK11466 hybrid sensory histid 28.4 3.7E+02 0.008 26.7 9.1 63 141-211 696-760 (914)
281 PF06415 iPGM_N: BPG-independe 28.3 2.3E+02 0.005 23.9 6.5 81 97-181 8-96 (223)
282 PF02571 CbiJ: Precorrin-6x re 28.2 3.8E+02 0.0081 22.8 10.5 29 40-73 73-101 (249)
283 TIGR03025 EPS_sugtrans exopoly 28.1 4E+02 0.0087 24.3 8.7 42 169-212 178-222 (445)
284 COG3969 Predicted phosphoadeno 28.0 1.1E+02 0.0024 27.9 4.7 44 79-127 23-67 (407)
285 cd06313 PBP1_ABC_sugar_binding 28.0 3.4E+02 0.0075 22.3 8.0 21 168-188 69-89 (272)
286 TIGR03023 WcaJ_sugtrans Undeca 27.9 4.2E+02 0.0091 24.2 8.8 43 168-212 180-225 (451)
287 PRK11091 aerobic respiration c 27.8 3.3E+02 0.0072 26.6 8.5 63 140-211 539-606 (779)
288 TIGR03151 enACPred_II putative 27.7 2.2E+02 0.0047 25.0 6.6 33 144-185 103-135 (307)
289 PRK08185 hypothetical protein; 27.7 1.8E+02 0.004 25.4 6.0 45 166-210 24-73 (283)
290 TIGR00289 conserved hypothetic 27.5 3.7E+02 0.0081 22.6 10.2 91 85-188 2-94 (222)
291 PRK00074 guaA GMP synthase; Re 27.5 5.3E+02 0.012 24.4 11.6 92 84-188 216-325 (511)
292 cd01998 tRNA_Me_trans tRNA met 27.4 4.5E+02 0.0097 23.4 11.5 23 168-190 102-124 (349)
293 COG4122 Predicted O-methyltran 27.2 3.3E+02 0.007 22.9 7.2 46 137-188 95-141 (219)
294 cd06271 PBP1_AglR_RafR_like Li 27.2 3.3E+02 0.0072 21.9 8.8 18 171-188 74-91 (268)
295 TIGR01520 FruBisAldo_II_A fruc 27.1 3.1E+02 0.0068 24.9 7.4 46 141-190 17-62 (357)
296 TIGR03573 WbuX N-acetyl sugar 27.0 4.5E+02 0.0097 23.3 10.5 23 167-189 148-170 (343)
297 PRK10336 DNA-binding transcrip 27.0 3E+02 0.0065 21.3 9.0 15 174-188 39-53 (219)
298 cd06296 PBP1_CatR_like Ligand- 26.9 3.4E+02 0.0074 21.9 8.9 77 98-188 11-87 (270)
299 COG0788 PurU Formyltetrahydrof 26.9 4.2E+02 0.009 23.3 7.8 133 52-190 19-177 (287)
300 PRK13015 3-dehydroquinate dehy 26.9 3.2E+02 0.0069 21.6 7.7 69 136-212 29-100 (146)
301 cd06318 PBP1_ABC_sugar_binding 26.9 3.5E+02 0.0076 22.1 8.7 18 170-187 71-88 (282)
302 cd06309 PBP1_YtfQ_like Peripla 26.7 3.5E+02 0.0076 22.0 8.2 79 98-188 11-89 (273)
303 PRK00766 hypothetical protein; 26.5 1.4E+02 0.0031 24.6 4.8 55 156-211 45-104 (194)
304 cd00946 FBP_aldolase_IIA Class 26.5 3.4E+02 0.0074 24.5 7.6 45 141-189 6-50 (345)
305 TIGR00064 ftsY signal recognit 26.5 4.1E+02 0.009 22.8 11.1 81 97-190 82-165 (272)
306 TIGR03156 GTP_HflX GTP-binding 26.1 3.3E+02 0.0072 24.3 7.6 39 167-208 54-92 (351)
307 KOG3111 D-ribulose-5-phosphate 26.1 4E+02 0.0086 22.4 8.6 67 106-189 78-144 (224)
308 cd06277 PBP1_LacI_like_1 Ligan 26.1 3.6E+02 0.0077 21.9 8.3 73 101-188 17-89 (268)
309 cd02069 methionine_synthase_B1 26.1 1.5E+02 0.0033 24.6 5.0 40 144-189 110-149 (213)
310 PLN00022 electron transfer fla 26.0 5E+02 0.011 23.5 13.1 95 85-190 28-128 (356)
311 PRK09197 fructose-bisphosphate 25.8 2.7E+02 0.0058 25.3 6.8 46 140-189 10-55 (350)
312 cd01977 Nitrogenase_VFe_alpha 25.8 5.1E+02 0.011 23.5 10.1 83 82-190 287-369 (415)
313 TIGR00619 sbcd exonuclease Sbc 25.7 1.6E+02 0.0035 24.8 5.3 6 184-189 81-86 (253)
314 PF11215 DUF3010: Protein of u 25.7 2.3E+02 0.0049 22.2 5.5 43 169-211 51-100 (138)
315 TIGR00167 cbbA ketose-bisphosp 25.7 3.7E+02 0.0081 23.5 7.6 63 144-210 11-82 (288)
316 PRK12822 phospho-2-dehydro-3-d 25.7 3.1E+02 0.0067 25.0 7.1 109 84-210 52-185 (356)
317 PRK13558 bacterio-opsin activa 25.5 4.7E+02 0.01 25.0 9.0 19 170-188 42-60 (665)
318 TIGR03787 marine_sort_RR prote 25.5 3.3E+02 0.0072 21.3 7.9 43 169-211 34-80 (227)
319 COG1553 DsrE Uncharacterized c 25.5 3.2E+02 0.0069 21.1 6.7 29 94-122 10-38 (126)
320 PF09967 DUF2201: VWA-like dom 25.3 2E+02 0.0043 21.6 5.2 42 86-127 1-42 (126)
321 cd06322 PBP1_ABC_sugar_binding 25.2 3.7E+02 0.008 21.7 8.1 20 169-188 70-89 (267)
322 cd00947 TBP_aldolase_IIB Tagat 25.2 2.9E+02 0.0063 24.1 6.7 54 156-210 15-74 (276)
323 PRK13059 putative lipid kinase 25.1 4.4E+02 0.0096 22.6 9.3 8 205-212 82-89 (295)
324 cd06324 PBP1_ABC_sugar_binding 25.1 4.2E+02 0.009 22.3 8.7 21 168-188 71-91 (305)
325 cd01540 PBP1_arabinose_binding 25.0 3.6E+02 0.0077 22.2 7.2 21 168-188 68-88 (289)
326 cd08171 GlyDH-like2 Glycerol d 25.0 4.8E+02 0.01 23.0 9.1 8 84-91 23-30 (345)
327 PF05690 ThiG: Thiazole biosyn 25.0 4.5E+02 0.0097 22.6 10.4 104 97-210 71-180 (247)
328 PRK11916 electron transfer fla 25.0 4.9E+02 0.011 23.1 10.1 84 83-190 4-90 (312)
329 cd06278 PBP1_LacI_like_2 Ligan 24.8 3.7E+02 0.008 21.6 9.1 75 99-188 12-86 (266)
330 COG1927 Mtd Coenzyme F420-depe 24.8 2.4E+02 0.0053 23.9 5.9 43 169-211 50-93 (277)
331 cd02173 ECT CTP:phosphoethanol 24.6 2.6E+02 0.0055 21.9 5.8 23 167-189 76-98 (152)
332 PHA02031 putative DnaG-like pr 24.3 1.8E+02 0.0039 25.3 5.2 38 84-126 207-244 (266)
333 PRK03620 5-dehydro-4-deoxygluc 24.3 4.7E+02 0.01 22.7 11.2 45 167-211 89-138 (303)
334 COG0482 TrmU Predicted tRNA(5- 24.3 5.4E+02 0.012 23.4 9.0 24 167-190 104-127 (356)
335 TIGR00696 wecB_tagA_cpsF bacte 24.3 3.8E+02 0.0082 21.5 8.6 16 171-186 92-107 (177)
336 cd08175 G1PDH Glycerol-1-phosp 24.2 5E+02 0.011 22.9 11.1 8 84-91 24-31 (348)
337 COG0069 GltB Glutamate synthas 24.1 3.9E+02 0.0083 25.4 7.7 49 156-208 306-355 (485)
338 PRK03670 competence damage-ind 24.1 4.3E+02 0.0093 22.6 7.5 64 139-207 22-89 (252)
339 KOG2862 Alanine-glyoxylate ami 24.1 4.8E+02 0.01 23.7 7.8 63 54-127 56-126 (385)
340 TIGR03702 lip_kinase_YegS lipi 24.1 4.6E+02 0.0099 22.4 8.9 65 141-213 18-88 (293)
341 PRK03673 hypothetical protein; 23.8 4.4E+02 0.0094 24.2 7.9 65 140-209 24-91 (396)
342 TIGR02069 cyanophycinase cyano 23.7 4.5E+02 0.0097 22.3 7.6 76 101-187 13-90 (250)
343 PF00107 ADH_zinc_N: Zinc-bind 23.7 2.4E+02 0.0052 20.3 5.3 22 167-189 71-92 (130)
344 cd07388 MPP_Tt1561 Thermus the 23.7 2.3E+02 0.005 23.7 5.7 8 182-189 66-73 (224)
345 PRK03692 putative UDP-N-acetyl 23.6 3.8E+02 0.0082 22.8 7.1 22 168-189 146-167 (243)
346 TIGR02151 IPP_isom_2 isopenten 23.5 5.2E+02 0.011 22.8 8.9 83 102-189 130-213 (333)
347 PF01116 F_bP_aldolase: Fructo 23.5 1.3E+02 0.0029 26.3 4.3 62 145-210 11-78 (287)
348 cd06319 PBP1_ABC_sugar_binding 23.5 4E+02 0.0088 21.6 8.4 20 169-188 70-89 (277)
349 COG5012 Predicted cobalamin bi 23.4 1.8E+02 0.0039 24.7 4.9 38 144-187 126-163 (227)
350 COG0301 ThiI Thiamine biosynth 23.2 5.9E+02 0.013 23.4 8.8 23 107-129 190-212 (383)
351 TIGR00147 lipid kinase, YegS/R 23.2 4.7E+02 0.01 22.2 8.3 17 104-120 20-36 (293)
352 COG0191 Fba Fructose/tagatose 23.0 3.5E+02 0.0075 23.9 6.7 63 144-210 11-80 (286)
353 PRK10841 hybrid sensory kinase 22.8 5.2E+02 0.011 26.4 9.0 62 141-211 816-879 (924)
354 PLN02501 digalactosyldiacylgly 22.7 8.1E+02 0.018 24.8 10.7 126 81-209 320-463 (794)
355 cd07015 Clp_protease_NfeD Nodu 22.6 2.3E+02 0.005 22.8 5.3 18 168-185 47-64 (172)
356 cd06295 PBP1_CelR Ligand bindi 22.5 4.3E+02 0.0092 21.5 9.2 20 169-188 77-96 (275)
357 PF07279 DUF1442: Protein of u 22.5 4.8E+02 0.01 22.1 10.0 38 82-126 41-79 (218)
358 PRK10766 DNA-binding transcrip 22.4 3.8E+02 0.0082 20.9 9.3 18 171-188 38-55 (221)
359 COG0075 Serine-pyruvate aminot 22.4 4.4E+02 0.0095 24.2 7.6 89 82-187 79-169 (383)
360 PLN03194 putative disease resi 22.3 2.3E+02 0.0049 23.4 5.2 53 137-190 41-93 (187)
361 PRK10124 putative UDP-glucose 22.1 1.7E+02 0.0036 27.3 5.0 43 168-212 192-237 (463)
362 TIGR00646 MG010 DNA primase-re 22.1 4.8E+02 0.01 22.0 7.8 38 83-125 154-191 (218)
363 PRK09483 response regulator; P 22.1 3.8E+02 0.0082 20.7 9.7 42 170-211 38-81 (217)
364 PF01645 Glu_synthase: Conserv 22.1 2.1E+02 0.0046 26.0 5.5 31 156-188 206-236 (368)
365 PF02729 OTCace_N: Aspartate/o 22.0 1.4E+02 0.003 23.2 3.8 36 169-209 85-120 (142)
366 TIGR01862 N2-ase-Ialpha nitrog 22.0 6.3E+02 0.014 23.3 9.9 82 83-190 317-398 (443)
367 PRK06247 pyruvate kinase; Prov 22.0 2.1E+02 0.0045 27.1 5.5 41 167-211 357-398 (476)
368 TIGR01826 CofD_related conserv 22.0 82 0.0018 28.0 2.7 44 166-212 161-211 (310)
369 PF01791 DeoC: DeoC/LacD famil 21.9 4.5E+02 0.0097 21.7 7.2 99 106-210 79-198 (236)
370 cd08173 Gro1PDH Sn-glycerol-1- 21.9 5.5E+02 0.012 22.5 10.6 9 179-187 102-110 (339)
371 PRK11058 GTPase HflX; Provisio 21.8 4.6E+02 0.01 24.2 7.8 21 167-187 62-82 (426)
372 PRK07998 gatY putative fructos 21.7 3.7E+02 0.0079 23.5 6.7 62 145-210 12-79 (283)
373 COG2025 FixB Electron transfer 21.7 5.8E+02 0.013 22.7 11.3 84 85-190 2-91 (313)
374 COG0816 Predicted endonuclease 21.5 2.8E+02 0.0061 21.7 5.4 45 167-211 41-94 (141)
375 cd06301 PBP1_rhizopine_binding 21.5 4.4E+02 0.0096 21.3 8.4 21 168-188 70-90 (272)
376 PLN02958 diacylglycerol kinase 21.5 6.8E+02 0.015 23.5 14.0 65 141-213 134-207 (481)
377 PRK13055 putative lipid kinase 21.5 5.6E+02 0.012 22.5 9.3 18 168-185 48-65 (334)
378 COG1609 PurR Transcriptional r 21.2 5.6E+02 0.012 22.4 11.9 19 169-187 104-122 (333)
379 PRK09836 DNA-binding transcrip 21.1 4.1E+02 0.0089 20.8 7.9 41 171-211 36-78 (227)
380 cd02174 CCT CTP:phosphocholine 21.1 1.7E+02 0.0036 22.9 4.1 22 167-188 76-97 (150)
381 TIGR02766 crypt_chrom_pln cryp 20.9 6.7E+02 0.015 23.2 9.0 78 100-188 11-96 (475)
382 PF13271 DUF4062: Domain of un 20.8 2.9E+02 0.0063 18.9 6.1 49 140-189 16-64 (83)
383 cd06167 LabA_like LabA_like pr 20.7 2.4E+02 0.0052 21.1 4.9 41 169-211 89-129 (149)
384 cd06328 PBP1_SBP_like_2 Peripl 20.7 5.4E+02 0.012 22.0 10.9 64 116-189 136-201 (333)
385 COG0137 ArgG Argininosuccinate 20.7 6.8E+02 0.015 23.2 11.1 93 82-190 3-123 (403)
386 TIGR01860 VNFD nitrogenase van 20.7 6.9E+02 0.015 23.2 11.1 83 82-190 326-408 (461)
387 PRK05406 LamB/YcsF family prot 20.6 5.5E+02 0.012 22.1 8.6 102 98-209 39-162 (246)
388 cd06317 PBP1_ABC_sugar_binding 20.5 4.6E+02 0.01 21.1 8.6 20 169-188 71-90 (275)
389 PRK01372 ddl D-alanine--D-alan 20.4 2.8E+02 0.0061 23.5 5.8 39 142-189 28-66 (304)
390 TIGR02852 spore_dpaB dipicolin 20.4 2.4E+02 0.0053 23.0 5.1 35 84-124 1-36 (187)
391 TIGR03679 arCOG00187 arCOG0018 20.3 5E+02 0.011 21.4 8.7 85 97-189 6-96 (218)
392 PF08968 DUF1885: Domain of un 20.2 1.3E+02 0.0027 23.3 3.0 42 81-122 68-120 (130)
393 PRK05447 1-deoxy-D-xylulose 5- 20.2 2E+02 0.0043 26.4 4.9 45 160-210 76-120 (385)
394 TIGR00177 molyb_syn molybdenum 20.2 3E+02 0.0065 21.0 5.4 40 142-186 32-73 (144)
395 TIGR01521 FruBisAldo_II_B fruc 20.2 5E+02 0.011 23.5 7.4 62 145-210 10-78 (347)
396 TIGR01064 pyruv_kin pyruvate k 20.2 2.2E+02 0.0048 26.7 5.4 41 167-211 361-402 (473)
397 cd06274 PBP1_FruR Ligand bindi 20.1 4.7E+02 0.01 21.1 9.2 17 172-188 71-87 (264)
398 TIGR01861 ANFD nitrogenase iro 20.1 7.6E+02 0.016 23.5 10.9 83 82-190 327-409 (513)
No 1
>PRK15456 universal stress protein UspG; Provisional
Probab=99.86 E-value=1.1e-20 Score=146.98 Aligned_cols=120 Identities=19% Similarity=0.268 Sum_probs=90.3
Q ss_pred CCCcEEEEeeCCCCCCC--HHHHHHHHHHHHHHhhcCCEEEEEEEeCCCCCC------h--hhH--------HHHHHHHH
Q 028129 82 NFKHLLLPITDQNPYLS--EGTRQAAATTAALAKKYGADITVVVIDERQKES------L--PEH--------ENRLSSIR 143 (213)
Q Consensus 82 ~~k~ILV~vD~~~~~~S--~~s~~Al~~A~~LA~~~~a~L~ll~V~~~~~~~------~--~~~--------~~~l~~~~ 143 (213)
||++||+|+| || +.+.+|+++|..+|+.. ++|+++|+.+..... . .+. ++.++.+.
T Consensus 1 m~~~ILv~vD-----~S~~~~s~~al~~A~~la~~~-~~l~llhv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 74 (142)
T PRK15456 1 MYKTIIMPVD-----VFEMELSDKAVRHAEFLAQDD-GVIHLLHVLPGSASLSLHRFAADVRRFEEHLQHEAEERLQTMV 74 (142)
T ss_pred CCccEEEecc-----CCchhHHHHHHHHHHHHHhcC-CeEEEEEEecCcccccccccccchhhHHHHHHHHHHHHHHHHH
Confidence 6999999999 88 48999999999999874 699999887643210 0 111 11122222
Q ss_pred HHHHhCCCCceeEEEEEcccCCchHHHHHHHHHHcCCcEEEEcccCCCCC----CchHHHHHhcCCCcEEEEc
Q 028129 144 WHLSEGGFQEFRLLERLGEGSSKPTAIIGDVADELNLDLVIISMEAIHSK----HVDANLLAEFIPCPVLLLP 212 (213)
Q Consensus 144 ~~l~~~g~~~~~v~~~v~~G~~~p~~~Il~~A~e~~aDLIVmG~~g~~~~----Gs~~~~vl~~a~cPVLvVp 212 (213)
+.+...+.+ +...+..|+ |.++|+++|+++++||||||+||++.. |+++..++++++||||+||
T Consensus 75 ~~~~~~~~~---v~~~v~~G~--~~~~I~~~a~~~~~DLIVmG~~g~~~~~~llGS~a~~v~~~a~~pVLvV~ 142 (142)
T PRK15456 75 SHFTIDPSR---IKQHVRFGS--VRDEVNELAEELGADVVVIGSRNPSISTHLLGSNASSVIRHANLPVLVVR 142 (142)
T ss_pred HHhCCCCcc---eEEEEcCCC--hHHHHHHHHhhcCCCEEEEcCCCCCccceecCccHHHHHHcCCCCEEEeC
Confidence 222223333 777788896 999999999999999999999987422 8999999999999999997
No 2
>PRK15005 universal stress protein F; Provisional
Probab=99.85 E-value=2.5e-20 Score=144.61 Aligned_cols=124 Identities=21% Similarity=0.288 Sum_probs=90.0
Q ss_pred CCCcEEEEeeCCCCCCCHH--HHHHHHHHHHHHhhcCCEEEEEEEeCCCCC----C------hhhHHHHH----HHHHHH
Q 028129 82 NFKHLLLPITDQNPYLSEG--TRQAAATTAALAKKYGADITVVVIDERQKE----S------LPEHENRL----SSIRWH 145 (213)
Q Consensus 82 ~~k~ILV~vD~~~~~~S~~--s~~Al~~A~~LA~~~~a~L~ll~V~~~~~~----~------~~~~~~~l----~~~~~~ 145 (213)
||++||+|+| ||+. +.+|+++|.++|+..+++|+++++.+.... . .++.+... +.+.+.
T Consensus 1 m~~~ILv~~D-----~s~~~~~~~a~~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 75 (144)
T PRK15005 1 MNRTILVPID-----ISDSELTQRVISHVEAEAKIDDAEVHFLTVIPSLPYYASLGLAYSAELPAMDDLKAEAKSQLEEI 75 (144)
T ss_pred CCccEEEecC-----CCchhHHHHHHHHHHHHHhccCCeEEEEEEEccCcccccccccccccchHHHHHHHHHHHHHHHH
Confidence 6899999999 8987 579999999999999999999987653211 0 01111111 111112
Q ss_pred HHhCCCCceeEEEEEcccCCchHHHHHHHHHHcCCcEEEEcccCCCC----CCchHHHHHhcCCCcEEEEc
Q 028129 146 LSEGGFQEFRLLERLGEGSSKPTAIIGDVADELNLDLVIISMEAIHS----KHVDANLLAEFIPCPVLLLP 212 (213)
Q Consensus 146 l~~~g~~~~~v~~~v~~G~~~p~~~Il~~A~e~~aDLIVmG~~g~~~----~Gs~~~~vl~~a~cPVLvVp 212 (213)
..+.+.....+...+..|+ |.+.|+++|+++++||||||+++... -|++...++++++||||+||
T Consensus 76 ~~~~~~~~~~~~~~v~~G~--p~~~I~~~a~~~~~DLIV~Gs~~~~~~~~llGS~a~~vl~~a~cpVlvVr 144 (144)
T PRK15005 76 IKKFKLPTDRVHVHVEEGS--PKDRILELAKKIPADMIIIASHRPDITTYLLGSNAAAVVRHAECSVLVVR 144 (144)
T ss_pred HHHhCCCCCceEEEEeCCC--HHHHHHHHHHHcCCCEEEEeCCCCCchheeecchHHHHHHhCCCCEEEeC
Confidence 2222222222666777896 99999999999999999999985321 18999999999999999997
No 3
>PRK15118 universal stress global response regulator UspA; Provisional
Probab=99.84 E-value=5.4e-20 Score=143.22 Aligned_cols=123 Identities=18% Similarity=0.348 Sum_probs=90.3
Q ss_pred cCCCcEEEEeeCCCCCCCHHHHHHHHHHHHHHhhcCCEEEEEEEeCCCCC---Ch-----hhHH-HHHHH----HHHHHH
Q 028129 81 TNFKHLLLPITDQNPYLSEGTRQAAATTAALAKKYGADITVVVIDERQKE---SL-----PEHE-NRLSS----IRWHLS 147 (213)
Q Consensus 81 ~~~k~ILV~vD~~~~~~S~~s~~Al~~A~~LA~~~~a~L~ll~V~~~~~~---~~-----~~~~-~~l~~----~~~~l~ 147 (213)
.+|++||+|+| ||+.+..|+++|..+|+.++++|+++++..+... .. .+.+ ...+. +.+...
T Consensus 1 ~~~~~ILvavD-----~S~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 75 (144)
T PRK15118 1 MAYKHILIAVD-----LSPESKVLVEKAVSMARPYNAKVSLIHVDVNYSDLYTGLIDVNLGDMQKRISEETHHALTELST 75 (144)
T ss_pred CCceEEEEEcc-----CChhHHHHHHHHHHHHHhhCCEEEEEEEccChhhhhhhhhhcchHHHHHHHHHHHHHHHHHHHH
Confidence 36899999999 8999999999999999999999999988432111 00 0111 11111 122233
Q ss_pred hCCCCceeEE-EEEcccCCchHHHHHHHHHHcCCcEEEEcccCCCC--CCchHHHHHhcCCCcEEEEcC
Q 028129 148 EGGFQEFRLL-ERLGEGSSKPTAIIGDVADELNLDLVIISMEAIHS--KHVDANLLAEFIPCPVLLLPL 213 (213)
Q Consensus 148 ~~g~~~~~v~-~~v~~G~~~p~~~Il~~A~e~~aDLIVmG~~g~~~--~Gs~~~~vl~~a~cPVLvVp~ 213 (213)
..|+. +. ..+..|+ |.++|+++|+++++||||||+|+... -|+++..++++++||||+||.
T Consensus 76 ~~~~~---~~~~~~~~G~--p~~~I~~~a~~~~~DLIV~Gs~~~~~~~lgSva~~v~~~a~~pVLvv~~ 139 (144)
T PRK15118 76 NAGYP---ITETLSGSGD--LGQVLVDAIKKYDMDLVVCGHHQDFWSKLMSSARQLINTVHVDMLIVPL 139 (144)
T ss_pred hCCCC---ceEEEEEecC--HHHHHHHHHHHhCCCEEEEeCcccHHHHHHHHHHHHHhhCCCCEEEecC
Confidence 44555 32 3445686 99999999999999999999997411 178888999999999999984
No 4
>PRK09982 universal stress protein UspD; Provisional
Probab=99.83 E-value=7.6e-20 Score=142.95 Aligned_cols=120 Identities=15% Similarity=0.215 Sum_probs=87.1
Q ss_pred CCCcEEEEeeCCCCCCCHHHHHHHHHHHHHHhhcCCEEEEEEEeCCCCC---C--h---hhHHHHHHH-H----HHHHHh
Q 028129 82 NFKHLLLPITDQNPYLSEGTRQAAATTAALAKKYGADITVVVIDERQKE---S--L---PEHENRLSS-I----RWHLSE 148 (213)
Q Consensus 82 ~~k~ILV~vD~~~~~~S~~s~~Al~~A~~LA~~~~a~L~ll~V~~~~~~---~--~---~~~~~~l~~-~----~~~l~~ 148 (213)
+|++||+|+| +|+.+..|+++|..+|+.++++|+++||.+.... . . .+..+.+++ . .+....
T Consensus 2 ~~k~ILvavD-----~S~~s~~al~~A~~lA~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 76 (142)
T PRK09982 2 AYKHIGVAIS-----GNEEDALLVNKALELARHNDAHLTLIHIDDGLSELYPGIYFPATEDILQLLKNKSDNKLYKLTKN 76 (142)
T ss_pred CceEEEEEec-----CCcchHHHHHHHHHHHHHhCCeEEEEEEccCcchhchhhhccchHHHHHHHHHHHHHHHHHHHHh
Confidence 6899999999 8999999999999999999999999988654211 0 0 111111111 1 111111
Q ss_pred CCCCceeEEEEEcccCCchHHHHHHHHHHcCCcEEEEcccCCCCCCc-----hHHHHHhcCCCcEEEEcC
Q 028129 149 GGFQEFRLLERLGEGSSKPTAIIGDVADELNLDLVIISMEAIHSKHV-----DANLLAEFIPCPVLLLPL 213 (213)
Q Consensus 149 ~g~~~~~v~~~v~~G~~~p~~~Il~~A~e~~aDLIVmG~~g~~~~Gs-----~~~~vl~~a~cPVLvVp~ 213 (213)
.+.. .+...+..|+ |++.|+++|++.++||||||+| + +|+ ++..++++++||||+||+
T Consensus 77 ~~~~--~~~~~v~~G~--p~~~I~~~A~~~~aDLIVmG~~-~--~~~~~~~~va~~V~~~s~~pVLvv~~ 139 (142)
T PRK09982 77 IQWP--KTKLRIERGE--MPETLLEIMQKEQCDLLVCGHH-H--SFINRLMPAYRGMINKMSADLLIVPF 139 (142)
T ss_pred cCCC--cceEEEEecC--HHHHHHHHHHHcCCCEEEEeCC-h--hHHHHHHHHHHHHHhcCCCCEEEecC
Confidence 2222 2555667797 9999999999999999999986 5 332 566689999999999985
No 5
>cd01989 STK_N The N-terminal domain of Eukaryotic Serine Threonine kinases. The Serine Threonine kinases are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. The N-terminal domain is homologous to the USP family which has a ATP binding fold. The N-terminal domain is predicted to be involved in ATP binding.
Probab=99.81 E-value=5.9e-19 Score=137.31 Aligned_cols=119 Identities=14% Similarity=0.174 Sum_probs=90.8
Q ss_pred cEEEEeeCCCCCCCHHHHHHHHHHHHHHhhcCCEEEEEEEeCCCCC-C-------h-h--------hHHHHHHHHHHHHH
Q 028129 85 HLLLPITDQNPYLSEGTRQAAATTAALAKKYGADITVVVIDERQKE-S-------L-P--------EHENRLSSIRWHLS 147 (213)
Q Consensus 85 ~ILV~vD~~~~~~S~~s~~Al~~A~~LA~~~~a~L~ll~V~~~~~~-~-------~-~--------~~~~~l~~~~~~l~ 147 (213)
+||||+| +|+.+.+|+++|.++|+..+++|+++|+.++... . . . ..++.+++....+.
T Consensus 1 ~ILVavD-----~S~~s~~al~~a~~~a~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 75 (146)
T cd01989 1 SVAVAVD-----KDKKSKNALKWALDNLATKGQTIVLVHVHPPITSIPSSSGKLEVASAYKQEEDKEAKELLLPYRCFCS 75 (146)
T ss_pred CEEEEec-----CccccHHHHHHHHHhccCCCCcEEEEEeccCcccCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5999999 8999999999999999999999999988654211 0 0 0 11122233333344
Q ss_pred hCCCCceeEEEEEcccCCchHHHHHHHHHHcCCcEEEEcccCCCC-----CC-chHHHHHhcCC--CcEEEEc
Q 028129 148 EGGFQEFRLLERLGEGSSKPTAIIGDVADELNLDLVIISMEAIHS-----KH-VDANLLAEFIP--CPVLLLP 212 (213)
Q Consensus 148 ~~g~~~~~v~~~v~~G~~~p~~~Il~~A~e~~aDLIVmG~~g~~~-----~G-s~~~~vl~~a~--cPVLvVp 212 (213)
..|+. ++..+..|. +|++.|+++|++.++||||||+||++. .| +++..++++++ ||||+|+
T Consensus 76 ~~~~~---~~~~~~~g~-~~~~~I~~~a~~~~~dlIV~Gs~g~~~l~~~~~gssva~~Vi~~a~~~c~Vlvv~ 144 (146)
T cd01989 76 RKGVQ---CEDVVLEDD-DVAKAIVEYVADHGITKLVMGASSDNHFSMKFKKSDVASSVLKEAPDFCTVYVVS 144 (146)
T ss_pred hcCCe---EEEEEEeCC-cHHHHHHHHHHHcCCCEEEEeccCCCceeecccCCchhHHHHhcCCCCceEEEEe
Confidence 45666 666666664 599999999999999999999998742 14 68999999999 9999996
No 6
>PRK10116 universal stress protein UspC; Provisional
Probab=99.80 E-value=2.8e-18 Score=132.90 Aligned_cols=123 Identities=15% Similarity=0.276 Sum_probs=89.0
Q ss_pred CCCcEEEEeeCCCCCCCHHHHHHHHHHHHHHhhcCCEEEEEEEeCCCCC--Ch--h---hHHHHH-HH----HHHHHHhC
Q 028129 82 NFKHLLLPITDQNPYLSEGTRQAAATTAALAKKYGADITVVVIDERQKE--SL--P---EHENRL-SS----IRWHLSEG 149 (213)
Q Consensus 82 ~~k~ILV~vD~~~~~~S~~s~~Al~~A~~LA~~~~a~L~ll~V~~~~~~--~~--~---~~~~~l-~~----~~~~l~~~ 149 (213)
+|++||+++| +++.+..++++|..||+.++++|+++++.+.... .. + +.++.. ++ +.+.....
T Consensus 2 ~~~~ILv~~D-----~s~~s~~al~~A~~lA~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 76 (142)
T PRK10116 2 SYSNILVAVA-----VTPESQQLLAKAVSIARPVNGKISLITLASDPEMYNQFAAPMLEDLRSVMQEETQSFLDKLIQDA 76 (142)
T ss_pred CCceEEEEcc-----CCcchHHHHHHHHHHHHHhCCEEEEEEEccCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 6999999999 8999999999999999999999999977543211 11 1 111111 11 11112334
Q ss_pred CCCceeEEEEEcccCCchHHHHHHHHHHcCCcEEEEcccCCCC---CCchHHHHHhcCCCcEEEEcC
Q 028129 150 GFQEFRLLERLGEGSSKPTAIIGDVADELNLDLVIISMEAIHS---KHVDANLLAEFIPCPVLLLPL 213 (213)
Q Consensus 150 g~~~~~v~~~v~~G~~~p~~~Il~~A~e~~aDLIVmG~~g~~~---~Gs~~~~vl~~a~cPVLvVp~ 213 (213)
|+.. ....+..|+ +.++|+++++++++||||||+++++. -++++..++++++||||+||.
T Consensus 77 ~~~~--~~~~~~~G~--~~~~I~~~a~~~~~DLiV~g~~~~~~~~~~~s~a~~v~~~~~~pVLvv~~ 139 (142)
T PRK10116 77 DYPI--EKTFIAYGE--LSEHILEVCRKHHFDLVICGNHNHSFFSRASCSAKRVIASSEVDVLLVPL 139 (142)
T ss_pred CCCe--EEEEEecCC--HHHHHHHHHHHhCCCEEEEcCCcchHHHHHHHHHHHHHhcCCCCEEEEeC
Confidence 4441 224566786 99999999999999999999998721 145667889999999999984
No 7
>PF00582 Usp: Universal stress protein family; InterPro: IPR006016 The universal stress protein UspA P28242 from SWISSPROT [] is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA [] reveals an alpha/beta fold similar to that of the Methanocaldococcus jannaschii (Methanococcus jannaschii) MJ0577 protein, which binds ATP [], though UspA lacks ATP-binding activity.; GO: 0006950 response to stress; PDB: 3DLO_C 3QTB_A 2PFS_A 3TNJ_A 1JMV_D 3FH0_B 3FDX_B 3AB7_A 3AB8_A 2GM3_F ....
Probab=99.78 E-value=4.3e-18 Score=128.21 Aligned_cols=121 Identities=27% Similarity=0.357 Sum_probs=88.9
Q ss_pred CCCcEEEEeeCCCCCCCHHHHHHHHHHHHHHhhcCCEEEEEEEeCCCCCChh-hH-----HHHHHHHHH--------HHH
Q 028129 82 NFKHLLLPITDQNPYLSEGTRQAAATTAALAKKYGADITVVVIDERQKESLP-EH-----ENRLSSIRW--------HLS 147 (213)
Q Consensus 82 ~~k~ILV~vD~~~~~~S~~s~~Al~~A~~LA~~~~a~L~ll~V~~~~~~~~~-~~-----~~~l~~~~~--------~l~ 147 (213)
||++||||+| +++.+..++++|..+|+..+++++++++.+....... .. ....+.... ...
T Consensus 1 M~~~Ilv~~d-----~~~~~~~al~~a~~la~~~~~~i~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (140)
T PF00582_consen 1 MYKRILVAID-----GSEESRRALRFALELAKRSGAEITLLHVIPPPPQYSFSAAEDEESEEEAEEEEQARQAEAEEAEA 75 (140)
T ss_dssp -TSEEEEEES-----SSHHHHHHHHHHHHHHHHHTCEEEEEEEEESCHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEEC-----CCHHHHHHHHHHHHHHHhhCCeEEEEEeeccccccccccccccccccccchhhhhhhHHHHHHhh
Confidence 6899999999 8999999999999999999999999988775533211 00 000000000 111
Q ss_pred hCCCCceeEEEEEcccCCchHHHHHHHHHHcCCcEEEEcccCCCC-----CCchHHHHHhcCCCcEEEEc
Q 028129 148 EGGFQEFRLLERLGEGSSKPTAIIGDVADELNLDLVIISMEAIHS-----KHVDANLLAEFIPCPVLLLP 212 (213)
Q Consensus 148 ~~g~~~~~v~~~v~~G~~~p~~~Il~~A~e~~aDLIVmG~~g~~~-----~Gs~~~~vl~~a~cPVLvVp 212 (213)
..+.. ....+..|+ +.++|+++++++++||||||+++++. .|++...++++++||||+||
T Consensus 76 ~~~~~---~~~~~~~~~--~~~~i~~~~~~~~~dliv~G~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~ 140 (140)
T PF00582_consen 76 EGGIV---IEVVIESGD--VADAIIEFAEEHNADLIVMGSRGRSGLERLLFGSVAEKLLRHAPCPVLVVP 140 (140)
T ss_dssp HTTSE---EEEEEEESS--HHHHHHHHHHHTTCSEEEEESSSTTSTTTSSSHHHHHHHHHHTSSEEEEEE
T ss_pred hccce---eEEEEEeec--cchhhhhccccccceeEEEeccCCCCccCCCcCCHHHHHHHcCCCCEEEeC
Confidence 22222 444555675 99999999999999999999988521 27888899999999999997
No 8
>cd01988 Na_H_Antiporter_C The C-terminal domain of a subfamily of Na+ /H+ antiporter existed in bacteria and archea . Na+/H+ exchange proteins eject protons from cells, effectively eliminating excess acid from actively metabolising cells. Na+ /H+ exchange activity is also crucial for the regulation of cell volume, and for the reabsorption of NaCl across renal, intestinal, and other epithelia. These antiports exchange Na+ for H+ in an electroneutral manner, and this activity is carried out by a family of Na+ /H+ exchangers, or NHEs, which are known to be present in both prokaryotic and eukaryotic cells. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N-terminus and a large cytoplasmic region at the C-terminus. The transmembrane regions M3-M12 share identity wit h other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the regio
Probab=99.77 E-value=2.1e-17 Score=125.45 Aligned_cols=119 Identities=20% Similarity=0.204 Sum_probs=92.9
Q ss_pred cEEEEeeCCCCCCCHHHHHHHHHHHHHHhhcCCEEEEEEEeCCCCCC----h----hhHHHHHHHHHHHHHhCCCCceeE
Q 028129 85 HLLLPITDQNPYLSEGTRQAAATTAALAKKYGADITVVVIDERQKES----L----PEHENRLSSIRWHLSEGGFQEFRL 156 (213)
Q Consensus 85 ~ILV~vD~~~~~~S~~s~~Al~~A~~LA~~~~a~L~ll~V~~~~~~~----~----~~~~~~l~~~~~~l~~~g~~~~~v 156 (213)
+||||+| +++.+..++++|.++|+..+++++++|+.+..... . ...++.++.+.+.+.+.|++ +
T Consensus 1 ~ILv~vd-----~s~~~~~~l~~a~~la~~~~~~v~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~---~ 72 (132)
T cd01988 1 RILVPVA-----NPNTARDLLELAAALARAQNGEIIPLNVIEVPNHSSPSQLEVNVQRARKLLRQAERIAASLGVP---V 72 (132)
T ss_pred CEEEecC-----CchhHHHHHHHHHHHhhcCCCeEEEEEEEecCCCCCcchhHHHHHHHHHHHHHHHHHhhhcCCc---e
Confidence 6999999 89999999999999999999999999887643211 0 12233344444555566776 6
Q ss_pred EEEEcccCCchHHHHHHHHHHcCCcEEEEcccCCCC-----CCchHHHHHhcCCCcEEEEc
Q 028129 157 LERLGEGSSKPTAIIGDVADELNLDLVIISMEAIHS-----KHVDANLLAEFIPCPVLLLP 212 (213)
Q Consensus 157 ~~~v~~G~~~p~~~Il~~A~e~~aDLIVmG~~g~~~-----~Gs~~~~vl~~a~cPVLvVp 212 (213)
+..+..+. ++.++|+++++++++||||||.+++.. -|++...++++++|||++||
T Consensus 73 ~~~~~~~~-~~~~~I~~~a~~~~~dlIV~G~~~~~~~~~~~lGs~~~~v~~~~~~pvlvv~ 132 (132)
T cd01988 73 HTIIRIDH-DIASGILRTAKERQADLIIMGWHGSTSLRDRLFGGVIDQVLESAPCDVAVVK 132 (132)
T ss_pred EEEEEecC-CHHHHHHHHHHhcCCCEEEEecCCCCCccceecCchHHHHHhcCCCCEEEeC
Confidence 66554432 499999999999999999999998632 28889999999999999986
No 9
>PRK11175 universal stress protein UspE; Provisional
Probab=99.75 E-value=2.6e-17 Score=142.79 Aligned_cols=152 Identities=15% Similarity=0.204 Sum_probs=110.5
Q ss_pred ccccCcchhhhhhhhcccCCCCCcccchhhhhhcCCCcEEEEeeCCCCCCCHH-------HHHHHHHHHHHHhhc-CCEE
Q 028129 48 ARKLSLFPRFRRIGHKAKVKSPESEINSVAEAFTNFKHLLLPITDQNPYLSEG-------TRQAAATTAALAKKY-GADI 119 (213)
Q Consensus 48 ~~~~~~~~~~~r~~~~a~~~~~~~~~~~~~~~~~~~k~ILV~vD~~~~~~S~~-------s~~Al~~A~~LA~~~-~a~L 119 (213)
+++.-++++-++..+.++||++.++.. .+..+++||+++| +++. +..++++|..+|+.+ +++|
T Consensus 121 ~~~~~~gs~~~~l~~~~~~pvlvv~~~----~~~~~~~Ilva~D-----~s~~~~~~~~~~~~al~~a~~la~~~~~a~l 191 (305)
T PRK11175 121 LESVIFTPTDWHLLRKCPCPVLMVKDQ----DWPEGGKILVAVN-----VASEEPYHDALNEKLVEEAIDLAEQLNHAEV 191 (305)
T ss_pred HHhhccChhHHHHHhcCCCCEEEeccc----ccCCCCeEEEEeC-----CCCCccchhHHHHHHHHHHHHHHhhCcCCce
Confidence 333446778889999999999888752 3556899999999 5643 468999999999998 9999
Q ss_pred EEEEEeCCCCCC---------hhhHHH-----HHHHHHHHHHhCCCCceeEEEEEcccCCchHHHHHHHHHHcCCcEEEE
Q 028129 120 TVVVIDERQKES---------LPEHEN-----RLSSIRWHLSEGGFQEFRLLERLGEGSSKPTAIIGDVADELNLDLVII 185 (213)
Q Consensus 120 ~ll~V~~~~~~~---------~~~~~~-----~l~~~~~~l~~~g~~~~~v~~~v~~G~~~p~~~Il~~A~e~~aDLIVm 185 (213)
+++++.+..... ..+.++ ..+.+.+.....++.. ....+..|+ +.++|+++++++++|||||
T Consensus 192 ~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~v~~G~--~~~~I~~~a~~~~~DLIVm 267 (305)
T PRK11175 192 HLVNAYPVTPINIAIELPEFDPSVYNDAIRGQHLLAMKALRQKFGIDE--EQTHVEEGL--PEEVIPDLAEHLDAELVIL 267 (305)
T ss_pred EEEEEecCcchhccccccccchhhHHHHHHHHHHHHHHHHHHHhCCCh--hheeeccCC--HHHHHHHHHHHhCCCEEEE
Confidence 999886532211 011111 1112222334446552 123456786 9999999999999999999
Q ss_pred cccCCCC-----CCchHHHHHhcCCCcEEEEc
Q 028129 186 SMEAIHS-----KHVDANLLAEFIPCPVLLLP 212 (213)
Q Consensus 186 G~~g~~~-----~Gs~~~~vl~~a~cPVLvVp 212 (213)
|+++++. -|++...++++++||||+||
T Consensus 268 G~~~~~~~~~~llGS~a~~v~~~~~~pVLvv~ 299 (305)
T PRK11175 268 GTVGRTGLSAAFLGNTAEHVIDHLNCDLLAIK 299 (305)
T ss_pred CCCccCCCcceeecchHHHHHhcCCCCEEEEc
Confidence 9998732 18899999999999999997
No 10
>cd01987 USP_OKCHK USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family. The family of KdpD sensor kinase proteins regulates the kdpFABC operon responsible for potassium transport. The USP domain is homologous to the universal stress protein Usp Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity.
Probab=99.74 E-value=8.9e-17 Score=121.71 Aligned_cols=117 Identities=17% Similarity=0.168 Sum_probs=92.6
Q ss_pred cEEEEeeCCCCCCCHHHHHHHHHHHHHHhhcCCEEEEEEEeCCCCCCh-hhHHHHHHHHHHHHHhCCCCceeEEEEEccc
Q 028129 85 HLLLPITDQNPYLSEGTRQAAATTAALAKKYGADITVVVIDERQKESL-PEHENRLSSIRWHLSEGGFQEFRLLERLGEG 163 (213)
Q Consensus 85 ~ILV~vD~~~~~~S~~s~~Al~~A~~LA~~~~a~L~ll~V~~~~~~~~-~~~~~~l~~~~~~l~~~g~~~~~v~~~v~~G 163 (213)
+||+|+| +++.+.+++++|..+|+.++++|+++++.+...... .+.++.++...+...+.+++ +. .+..|
T Consensus 1 ~Ilv~vd-----~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~l~~~~~~~~~~~~~---~~-~~~~~ 71 (124)
T cd01987 1 RILVCIS-----GGPNAERLIRRAARLADRLKAPWYVVYVETPRLNRLSEAERRRLAEALRLAEELGAE---VV-TLPGD 71 (124)
T ss_pred CEEEEEC-----CCcchHHHHHHHHHHHHHhCCCEEEEEEecCccccCCHHHHHHHHHHHHHHHHcCCE---EE-EEeCC
Confidence 6999999 899999999999999999999999998876543221 23445566666556555554 33 23344
Q ss_pred CCchHHHHHHHHHHcCCcEEEEcccCCCC-----CCchHHHHHhcC-CCcEEEEc
Q 028129 164 SSKPTAIIGDVADELNLDLVIISMEAIHS-----KHVDANLLAEFI-PCPVLLLP 212 (213)
Q Consensus 164 ~~~p~~~Il~~A~e~~aDLIVmG~~g~~~-----~Gs~~~~vl~~a-~cPVLvVp 212 (213)
+++++|.++++++++||||||++++.. .|++...+++++ +|||||++
T Consensus 72 --~~~~~I~~~~~~~~~dllviG~~~~~~~~~~~~Gs~~~~v~~~a~~~~v~v~~ 124 (124)
T cd01987 72 --DVAEAIVEFAREHNVTQIVVGKSRRSRWRELFRGSLVDRLLRRAGNIDVHIVA 124 (124)
T ss_pred --cHHHHHHHHHHHcCCCEEEeCCCCCchHHHHhcccHHHHHHHhCCCCeEEEeC
Confidence 599999999999999999999998721 288899999998 99999985
No 11
>PRK11175 universal stress protein UspE; Provisional
Probab=99.73 E-value=7.7e-17 Score=139.83 Aligned_cols=122 Identities=18% Similarity=0.188 Sum_probs=90.6
Q ss_pred cCCCcEEEEeeCCCCCCCHHHHHHHHHHHHHHhhcCCEEEEEEEeCCC-CC--C---hhhH-----------HHHHHHHH
Q 028129 81 TNFKHLLLPITDQNPYLSEGTRQAAATTAALAKKYGADITVVVIDERQ-KE--S---LPEH-----------ENRLSSIR 143 (213)
Q Consensus 81 ~~~k~ILV~vD~~~~~~S~~s~~Al~~A~~LA~~~~a~L~ll~V~~~~-~~--~---~~~~-----------~~~l~~~~ 143 (213)
.+|++||+++| +|+.+..|+++|+++|+..+++|+++++.+.. .. . .... ++.+++..
T Consensus 1 ~~~~~ILv~~D-----~s~~~~~al~~a~~lA~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 75 (305)
T PRK11175 1 AKYQNILVVID-----PNQDDQPALRRAVYLAQRNGGKITAFLPIYDFSYEMTTLLSPDEREAMRQGVISQRTAWIREQA 75 (305)
T ss_pred CCcceEEEEcC-----CCccccHHHHHHHHHHHhcCCCEEEEEeccCchhhhhcccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 36999999999 89999999999999999999999999654321 10 0 0110 11122222
Q ss_pred HHHHhCCCCceeEEEEEc-ccCCchHHHHHHHHHHcCCcEEEEcccCCCC-----CCchHHHHHhcCCCcEEEEc
Q 028129 144 WHLSEGGFQEFRLLERLG-EGSSKPTAIIGDVADELNLDLVIISMEAIHS-----KHVDANLLAEFIPCPVLLLP 212 (213)
Q Consensus 144 ~~l~~~g~~~~~v~~~v~-~G~~~p~~~Il~~A~e~~aDLIVmG~~g~~~-----~Gs~~~~vl~~a~cPVLvVp 212 (213)
..+...|++ +...+. .|+ +.++|+++|+++++||||||++|+.. .|++...++++++||||+||
T Consensus 76 ~~~~~~~~~---~~~~v~~~g~--~~~~i~~~a~~~~~DLiV~G~~~~~~~~~~~~gs~~~~l~~~~~~pvlvv~ 145 (305)
T PRK11175 76 KPYLDAGIP---IEIKVVWHNR--PFEAIIQEVIAGGHDLVVKMTHQHDKLESVIFTPTDWHLLRKCPCPVLMVK 145 (305)
T ss_pred HHHhhcCCc---eEEEEecCCC--cHHHHHHHHHhcCCCEEEEeCCCCcHHHhhccChhHHHHHhcCCCCEEEec
Confidence 233345665 666555 475 99999999999999999999998621 17778889999999999997
No 12
>cd00293 USP_Like Usp: Universal stress protein family. The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae Usp reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, athough Usp lacks ATP-binding activity.
Probab=99.62 E-value=3.2e-14 Score=106.00 Aligned_cols=117 Identities=26% Similarity=0.410 Sum_probs=91.0
Q ss_pred cEEEEeeCCCCCCCHHHHHHHHHHHHHHhhcCCEEEEEEEeCCCCCC--------hhhHHHHHHHHHHHHHhCCCCceeE
Q 028129 85 HLLLPITDQNPYLSEGTRQAAATTAALAKKYGADITVVVIDERQKES--------LPEHENRLSSIRWHLSEGGFQEFRL 156 (213)
Q Consensus 85 ~ILV~vD~~~~~~S~~s~~Al~~A~~LA~~~~a~L~ll~V~~~~~~~--------~~~~~~~l~~~~~~l~~~g~~~~~v 156 (213)
+|||++| +++.+..++++|..+|+..+++++++++.+..... ..+.++.++.........|+. +
T Consensus 1 ~ilv~i~-----~~~~~~~~l~~a~~~a~~~~~~i~~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~---~ 72 (130)
T cd00293 1 RILVAVD-----GSEESERALRWAARLARRLGAELVLLHVVDPPPSSAAELAELLEEEARALLEALREALAEAGVK---V 72 (130)
T ss_pred CEEEEeC-----CCHHHHHHHHHHHHHHHhcCCEEEEEEEecCCCCcchhHHHHHHHHHHHHHHHHHHHHhcCCCc---e
Confidence 6999999 79999999999999999999999999887654321 012333444444333345666 6
Q ss_pred EEEEcccCCchHHHHHHHHHHcCCcEEEEcccCCCC-----CCchHHHHHhcCCCcEEEE
Q 028129 157 LERLGEGSSKPTAIIGDVADELNLDLVIISMEAIHS-----KHVDANLLAEFIPCPVLLL 211 (213)
Q Consensus 157 ~~~v~~G~~~p~~~Il~~A~e~~aDLIVmG~~g~~~-----~Gs~~~~vl~~a~cPVLvV 211 (213)
...+..|+ +.++|.+++++.++|+||||++++.. .|+....++++++||||++
T Consensus 73 ~~~~~~~~--~~~~i~~~~~~~~~dlvvig~~~~~~~~~~~~~~~~~~ll~~~~~pvliv 130 (130)
T cd00293 73 ETVVLEGD--PAEAILEAAEELGADLIVMGSRGRSGLRRLLLGSVAERVLRHAPCPVLVV 130 (130)
T ss_pred EEEEecCC--CHHHHHHHHHHcCCCEEEEcCCCCCccceeeeccHHHHHHhCCCCCEEeC
Confidence 66677786 79999999999999999999987632 3778888999999999985
No 13
>COG0589 UspA Universal stress protein UspA and related nucleotide-binding proteins [Signal transduction mechanisms]
Probab=99.55 E-value=3.1e-13 Score=104.24 Aligned_cols=124 Identities=25% Similarity=0.382 Sum_probs=95.6
Q ss_pred cCCCcEEEEeeCCCCCCCHHHHHHHHHHHHHHhhcCCEEEEEEEeCCCCCC----h---------------hhHHHHHHH
Q 028129 81 TNFKHLLLPITDQNPYLSEGTRQAAATTAALAKKYGADITVVVIDERQKES----L---------------PEHENRLSS 141 (213)
Q Consensus 81 ~~~k~ILV~vD~~~~~~S~~s~~Al~~A~~LA~~~~a~L~ll~V~~~~~~~----~---------------~~~~~~l~~ 141 (213)
.++++|++++|. +++.+..+++.+..++...++.+.++++.+..... . ...++.++.
T Consensus 3 ~~~~~il~~~d~----~s~~~~~a~~~a~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (154)
T COG0589 3 AMYKKILVAVDV----GSEAAEKALEEAVALAKRLGAPLILLVVIDPLEPTALVSVALADAPIPLSEEELEEEAEELLAE 78 (154)
T ss_pred cccceEEEEeCC----CCHHHHHHHHHHHHHHHhcCCeEEEEEEecccccccccccccccchhhhhHHHHHHHHHHHHHH
Confidence 568999999993 49999999999999999999999988665432211 0 011333444
Q ss_pred HHHHHHhCCCCceeEEEEEcccCCch-HHHHHHHHHHcCCcEEEEcccCCCC-----CCchHHHHHhcCCCcEEEEc
Q 028129 142 IRWHLSEGGFQEFRLLERLGEGSSKP-TAIIGDVADELNLDLVIISMEAIHS-----KHVDANLLAEFIPCPVLLLP 212 (213)
Q Consensus 142 ~~~~l~~~g~~~~~v~~~v~~G~~~p-~~~Il~~A~e~~aDLIVmG~~g~~~-----~Gs~~~~vl~~a~cPVLvVp 212 (213)
+.+.+...|... +...+..|. | .++|+++++++++||||||++|+.. -|+++..++++++||||++|
T Consensus 79 ~~~~~~~~~~~~--~~~~~~~g~--~~~~~i~~~a~~~~adliV~G~~g~~~l~~~llGsvs~~v~~~~~~pVlvv~ 151 (154)
T COG0589 79 AKALAEAAGVPV--VETEVVEGS--PSAEEILELAEEEDADLIVVGSRGRSGLSRLLLGSVAEKVLRHAPCPVLVVR 151 (154)
T ss_pred HHHHHHHcCCCe--eEEEEecCC--CcHHHHHHHHHHhCCCEEEECCCCCccccceeeehhHHHHHhcCCCCEEEEc
Confidence 555566677662 355667787 6 7999999999999999999987632 18889999999999999997
No 14
>PRK12652 putative monovalent cation/H+ antiporter subunit E; Reviewed
Probab=99.53 E-value=1.7e-13 Score=122.63 Aligned_cols=101 Identities=19% Similarity=0.195 Sum_probs=77.0
Q ss_pred hcCCCcEEEEeeCCCCCCCHHHHHHHHHHHHHHhhc--CCEEEEEEEeCCCCCC--h----hhHHHHHHHHHHHHHh---
Q 028129 80 FTNFKHLLLPITDQNPYLSEGTRQAAATTAALAKKY--GADITVVVIDERQKES--L----PEHENRLSSIRWHLSE--- 148 (213)
Q Consensus 80 ~~~~k~ILV~vD~~~~~~S~~s~~Al~~A~~LA~~~--~a~L~ll~V~~~~~~~--~----~~~~~~l~~~~~~l~~--- 148 (213)
+.+||+||||+| ||+.+.+|+++|+++|+.. +++|+++||.+..... . .+.++.++++.+.+.+
T Consensus 2 ~~~ykkILVavD-----GSe~S~~Al~~AielA~~~g~~AeL~lL~Vv~~~~~~~~~~~~~~~~eelle~~~~~~~~~l~ 76 (357)
T PRK12652 2 MMAANRLLVPVA-----DSVTVRQTVAYAVESAEEAAETPTVHLVAAASGRAVDPEGQDELAAAEELLERVEVWATEDLG 76 (357)
T ss_pred CcccCeEEEEeC-----CCHHHHHHHHHHHHHHHhcCCCCEEEEEEEecCcccccchhHHHHHHHHHHHHHHHHHHHhhh
Confidence 468999999999 9999999999999999985 6999999876543211 1 1233445555544433
Q ss_pred ---CCCCceeEEEEEcc--------cCCchHHHHHHHHHHcCCcEEEEcccCC
Q 028129 149 ---GGFQEFRLLERLGE--------GSSKPTAIIGDVADELNLDLVIISMEAI 190 (213)
Q Consensus 149 ---~g~~~~~v~~~v~~--------G~~~p~~~Il~~A~e~~aDLIVmG~~g~ 190 (213)
.|++ ++..+.. |+ |+++|+++|+++++||||||-.-.
T Consensus 77 ~~~~gV~---ve~~vv~~~~~~~~~G~--pae~Iv~~Aee~~aDLIVm~~~~~ 124 (357)
T PRK12652 77 DDASSVT---IETALLGTDEYLFGPGD--YAEVLIAYAEEHGIDRVVLDPEYN 124 (357)
T ss_pred cccCCCc---eEEEEEeccccccCCCC--HHHHHHHHHHHcCCCEEEECCCCC
Confidence 4666 6665544 76 999999999999999999999754
No 15
>PRK10490 sensor protein KdpD; Provisional
Probab=98.82 E-value=1e-07 Score=94.67 Aligned_cols=122 Identities=21% Similarity=0.226 Sum_probs=91.1
Q ss_pred hcCCCcEEEEeeCCCCCCCHHHHHHHHHHHHHHhhcCCEEEEEEEeCCCCCChh-hHHHHHHHHHHHHHhCCCCceeEEE
Q 028129 80 FTNFKHLLLPITDQNPYLSEGTRQAAATTAALAKKYGADITVVVIDERQKESLP-EHENRLSSIRWHLSEGGFQEFRLLE 158 (213)
Q Consensus 80 ~~~~k~ILV~vD~~~~~~S~~s~~Al~~A~~LA~~~~a~L~ll~V~~~~~~~~~-~~~~~l~~~~~~l~~~g~~~~~v~~ 158 (213)
|..-.+||||++ +++.+.+++++|..+|.+.++++++++|..+...... +.+..+.+.....++.|.+ +.
T Consensus 247 ~~~~eriLV~v~-----~~~~~~~lIr~~~rlA~~~~a~~~~l~V~~~~~~~~~~~~~~~l~~~~~lA~~lGa~---~~- 317 (895)
T PRK10490 247 WHTRDAILLCIG-----HNTGSEKLVRTAARLAARLGSVWHAVYVETPRLHRLPEKKRRAILSALRLAQELGAE---TA- 317 (895)
T ss_pred CCcCCeEEEEEC-----CCcchHHHHHHHHHHHHhcCCCEEEEEEecCCcCcCCHHHHHHHHHHHHHHHHcCCE---EE-
Confidence 455678999999 7999999999999999999999999999876433221 2222333333455566766 44
Q ss_pred EEcccCCchHHHHHHHHHHcCCcEEEEcccCCCC---CCchHHHHHhcCC-CcEEEEc
Q 028129 159 RLGEGSSKPTAIIGDVADELNLDLVIISMEAIHS---KHVDANLLAEFIP-CPVLLLP 212 (213)
Q Consensus 159 ~v~~G~~~p~~~Il~~A~e~~aDLIVmG~~g~~~---~Gs~~~~vl~~a~-cPVLvVp 212 (213)
...|+ |++++|++||++++++.||||..++.. .|+....+++.++ ..|.+|+
T Consensus 318 -~~~~~-dva~~i~~~A~~~~vt~IViG~s~~~~~~~~~s~~~~l~r~~~~idi~iv~ 373 (895)
T PRK10490 318 -TLSDP-AEEKAVLRYAREHNLGKIIIGRRASRRWWRRESFADRLARLGPDLDLVIVA 373 (895)
T ss_pred -EEeCC-CHHHHHHHHHHHhCCCEEEECCCCCCCCccCCCHHHHHHHhCCCCCEEEEe
Confidence 33466 799999999999999999999976521 3567777777665 7888775
No 16
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=98.36 E-value=6.8e-06 Score=79.61 Aligned_cols=123 Identities=21% Similarity=0.190 Sum_probs=89.2
Q ss_pred hhcCCCcEEEEeeCCCCCCCHHHHHHHHHHHHHHhhcCCEEEEEEEeCCCCCChh-hHHHHHHHHHHHHHhCCCCceeEE
Q 028129 79 AFTNFKHLLLPITDQNPYLSEGTRQAAATTAALAKKYGADITVVVIDERQKESLP-EHENRLSSIRWHLSEGGFQEFRLL 157 (213)
Q Consensus 79 ~~~~~k~ILV~vD~~~~~~S~~s~~Al~~A~~LA~~~~a~L~ll~V~~~~~~~~~-~~~~~l~~~~~~l~~~g~~~~~v~ 157 (213)
.|..-.+||||++ ++..+.+.+++|..+|.+.+++++.++|+.+...... .....+....+..++.|-+ +.
T Consensus 244 ~~~~~e~ilvcI~-----~~~~~e~liR~a~RlA~~~~a~~~av~v~~~~~~~~~~~~~~~l~~~~~Lae~lGae---~~ 315 (890)
T COG2205 244 VWAARERILVCIS-----GSPGSEKLIRRAARLASRLHAKWTAVYVETPELHRLSEKEARRLHENLRLAEELGAE---IV 315 (890)
T ss_pred cccccceEEEEEC-----CCCchHHHHHHHHHHHHHhCCCeEEEEEeccccccccHHHHHHHHHHHHHHHHhCCe---EE
Confidence 4455679999999 7999999999999999999999999999887655432 3344555555566666766 44
Q ss_pred EEEcccCCchHHHHHHHHHHcCCcEEEEcccCCCC-----CCchHHHHHhcC-CCcEEEEc
Q 028129 158 ERLGEGSSKPTAIIGDVADELNLDLVIISMEAIHS-----KHVDANLLAEFI-PCPVLLLP 212 (213)
Q Consensus 158 ~~v~~G~~~p~~~Il~~A~e~~aDLIVmG~~g~~~-----~Gs~~~~vl~~a-~cPVLvVp 212 (213)
. ..|. +.+++|.+||+++++.-||||...+.. .|+-...+++.+ ...|.+|+
T Consensus 316 ~--l~~~-dv~~~i~~ya~~~~~TkiViG~~~~~rw~~~~~~~l~~~L~~~~~~idv~ii~ 373 (890)
T COG2205 316 T--LYGG-DVAKAIARYAREHNATKIVIGRSRRSRWRRLFKGSLADRLAREAPGIDVHIVA 373 (890)
T ss_pred E--EeCC-cHHHHHHHHHHHcCCeeEEeCCCcchHHHHHhcccHHHHHHhcCCCceEEEee
Confidence 2 3355 799999999999999999999976511 133343444443 35555553
No 17
>cd01984 AANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases, ATP sulphurylases Universal Stress Response protein and electron transfer flavoprotein (ETF). The domain forms a apha/beta/apha fold which binds to Adenosine nucleotide.
Probab=97.73 E-value=0.00022 Score=50.43 Aligned_cols=79 Identities=16% Similarity=0.197 Sum_probs=62.2
Q ss_pred EEEEeeCCCCCCCHHHHHHHHHHHHHHhhcCCEEEEEEEeCCCCCChhhHHHHHHHHHHHHHhCCCCceeEEEEEcccCC
Q 028129 86 LLLPITDQNPYLSEGTRQAAATTAALAKKYGADITVVVIDERQKESLPEHENRLSSIRWHLSEGGFQEFRLLERLGEGSS 165 (213)
Q Consensus 86 ILV~vD~~~~~~S~~s~~Al~~A~~LA~~~~a~L~ll~V~~~~~~~~~~~~~~l~~~~~~l~~~g~~~~~v~~~v~~G~~ 165 (213)
||++++ ++..+..++.++..++ ..+.++.+++++ .
T Consensus 1 ilv~~s-----gg~dS~~~l~~~~~~~-~~~~~~~~~~~~--------------------------------------~- 35 (86)
T cd01984 1 ILVALS-----GGLDSSVLLHLAKRLK-SGGPEVVALVVV--------------------------------------A- 35 (86)
T ss_pred CEEEee-----CCHHHHHHHHHHHHHH-hcCCCEEEEEeH--------------------------------------H-
Confidence 688899 8889999999998877 446677777665 2
Q ss_pred chHHHHHHHHHHcCCcEEEEcccCCCC-----CC-chHHHHHhcCCCcEEE
Q 028129 166 KPTAIIGDVADELNLDLVIISMEAIHS-----KH-VDANLLAEFIPCPVLL 210 (213)
Q Consensus 166 ~p~~~Il~~A~e~~aDLIVmG~~g~~~-----~G-s~~~~vl~~a~cPVLv 210 (213)
....+.++++++++|+|++|+++... .| +....+++.++|||+.
T Consensus 36 -~~~~~~~~a~~~~~~~Iv~G~~~~d~~~~~~~~~~~~~~~~~~~~~~vl~ 85 (86)
T cd01984 36 -FVRILKRLAAEEGADVIILGHNADDVAGRRLGASANVLVVIKGAGIPVLT 85 (86)
T ss_pred -HHHHHHHHHHHcCCCEEEEcCCchhhhhhccCchhhhhhcccccCCceeC
Confidence 67889999999999999999986521 13 5667779999999974
No 18
>TIGR02432 lysidine_TilS_N tRNA(Ile)-lysidine synthetase, N-terminal domain. The only examples in which the wobble position of a tRNA must discriminate between G and A of mRNA are AUA (Ile) vs. AUG (Met) and UGA (stop) vs. UGG (Trp). In all bacteria, the wobble position of the tRNA(Ile) recognizing AUA is lysidine, a lysine derivative of cytidine. This family describes a protein domain found, apparently, in all bacteria in a single copy. Eukaryotic sequences appear to be organellar. The domain archictecture of this protein family is variable; some, including characterized proteins of E. coli and B. subtilis known to be tRNA(Ile)-lysidine synthetase, include a conserved 50-residue domain that many other members lack. This protein belongs to the ATP-binding PP-loop family ( pfam01171). It appears in the literature and protein databases as TilS, YacA, and putative cell cycle protein MesJ (a misnomer).
Probab=96.71 E-value=0.056 Score=43.62 Aligned_cols=97 Identities=9% Similarity=0.082 Sum_probs=66.3
Q ss_pred cEEEEeeCCCCCCCHHHHHHHHHHHHHHhhcCCEEEEEEEeCCCCCChhhHHHHHHHHHHHHHhCCCCceeEEEEE----
Q 028129 85 HLLLPITDQNPYLSEGTRQAAATTAALAKKYGADITVVVIDERQKESLPEHENRLSSIRWHLSEGGFQEFRLLERL---- 160 (213)
Q Consensus 85 ~ILV~vD~~~~~~S~~s~~Al~~A~~LA~~~~a~L~ll~V~~~~~~~~~~~~~~l~~~~~~l~~~g~~~~~v~~~v---- 160 (213)
+|+|++. |..+|.-++..+..+++..+.++.+++++..... +.+...+.+++..+..|++-+-+....
T Consensus 1 ~v~va~S-----GG~DS~~ll~ll~~~~~~~~~~v~~v~vd~g~~~---~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~ 72 (189)
T TIGR02432 1 RILVAVS-----GGVDSMALLHLLLKLQPKLKIRLIAAHVDHGLRP---ESDEEAEFVQQFCKKLNIPLEIKKVDVKALA 72 (189)
T ss_pred CEEEEeC-----CCHHHHHHHHHHHHHHHHcCCCEEEEEeCCCCCh---hHHHHHHHHHHHHHHcCCCEEEEEecchhhc
Confidence 5899999 8999999999998888877888999999875432 112334555556666677621111100
Q ss_pred -cccCCchH--------HHHHHHHHHcCCcEEEEcccCC
Q 028129 161 -GEGSSKPT--------AIIGDVADELNLDLVIISMEAI 190 (213)
Q Consensus 161 -~~G~~~p~--------~~Il~~A~e~~aDLIVmG~~g~ 190 (213)
..+. ... ..+.++|+++++|.|+.|++..
T Consensus 73 ~~~~~-~~~~~~r~~R~~~l~~~a~~~g~~~i~~Gh~~~ 110 (189)
T TIGR02432 73 KGKKK-NLEEAAREARYDFFEEIAKKHGADYILTAHHAD 110 (189)
T ss_pred cccCC-CHHHHHHHHHHHHHHHHHHHcCCCEEEEcCccH
Confidence 1111 122 5788899999999999999864
No 19
>PRK12342 hypothetical protein; Provisional
Probab=96.08 E-value=0.058 Score=46.48 Aligned_cols=103 Identities=18% Similarity=0.272 Sum_probs=66.6
Q ss_pred CCHHHHHHHHHHHHHHhhcCCEEEEEEEeCCCCCChhhHHHHHHHHHHHHHhCCCCc-eeEEEEEcccCCch---HHHHH
Q 028129 97 LSEGTRQAAATTAALAKKYGADITVVVIDERQKESLPEHENRLSSIRWHLSEGGFQE-FRLLERLGEGSSKP---TAIIG 172 (213)
Q Consensus 97 ~S~~s~~Al~~A~~LA~~~~a~L~ll~V~~~~~~~~~~~~~~l~~~~~~l~~~g~~~-~~v~~~v~~G~~~p---~~~Il 172 (213)
.++....|++.|++|. ++|++++++++.+... +. ..+.......|.++ +.+......|. |+ +..|.
T Consensus 33 iNp~D~~AlE~AlrLk-~~g~~Vtvls~Gp~~a------~~--~~l~r~alamGaD~avli~d~~~~g~-D~~ata~~La 102 (254)
T PRK12342 33 ISQFDLNAIEAASQLA-TDGDEIAALTVGGSLL------QN--SKVRKDVLSRGPHSLYLVQDAQLEHA-LPLDTAKALA 102 (254)
T ss_pred CChhhHHHHHHHHHHh-hcCCEEEEEEeCCChH------hH--HHHHHHHHHcCCCEEEEEecCccCCC-CHHHHHHHHH
Confidence 5778889999999998 6899999998887531 11 11212223335542 22332222344 56 68888
Q ss_pred HHHHHcCCcEEEEcccCC-CCCCchHHHHHhcCCCcEE
Q 028129 173 DVADELNLDLVIISMEAI-HSKHVDANLLAEFIPCPVL 209 (213)
Q Consensus 173 ~~A~e~~aDLIVmG~~g~-~~~Gs~~~~vl~~a~cPVL 209 (213)
.++++.++|||+.|...- ..+|-+...++.....|.+
T Consensus 103 ~~i~~~~~DLVl~G~~s~D~~tgqvg~~lA~~Lg~P~v 140 (254)
T PRK12342 103 AAIEKIGFDLLLFGEGSGDLYAQQVGLLLGELLQLPVI 140 (254)
T ss_pred HHHHHhCCCEEEEcCCcccCCCCCHHHHHHHHhCCCcE
Confidence 899998999999998753 1236666667666665543
No 20
>PF01012 ETF: Electron transfer flavoprotein domain; InterPro: IPR014730 Electron transfer flavoproteins (ETFs) serve as specific electron acceptors for primary dehydrogenases, transferring the electrons to terminal respiratory systems. They can be functionally classified into constitutive, "housekeeping" ETFs, mainly involved in the oxidation of fatty acids (Group I), and ETFs produced by some prokaryotes under specific growth conditions, receiving electrons only from the oxidation of specific substrates (Group II) []. ETFs are heterodimeric proteins composed of an alpha and beta subunit, and contain an FAD cofactor and AMP [, , , , ]. ETF consists of three domains: domains I and II are formed by the N- and C-terminal portions of the alpha subunit, respectively, while domain III is formed by the beta subunit. Domains I and III share an almost identical alpha-beta-alpha sandwich fold, while domain II forms an alpha-beta-alpha sandwich similar to that of bacterial flavodoxins. FAD is bound in a cleft between domains II and III, while domain III binds the AMP molecule. Interactions between domains I and III stabilise the protein, forming a shallow bowl where domain II resides. This entry represents the N-terminal domain of both the alpha and beta subunits from Group I and Group II ETFs.; PDB: 1EFP_B 3FET_B 3IH5_B 2A1T_S 1EFV_B 1T9G_S 2A1U_B 1O96_E 1O94_C 3CLU_C ....
Probab=96.05 E-value=0.048 Score=43.19 Aligned_cols=110 Identities=19% Similarity=0.252 Sum_probs=65.7
Q ss_pred EEEEeeCCCCCCCHHHHHHHHHHHHHHhhcCCEEEEEEEeCCCCCChhhHHHHHHHHHHHHHhCCCCceeEEEEEc----
Q 028129 86 LLLPITDQNPYLSEGTRQAAATTAALAKKYGADITVVVIDERQKESLPEHENRLSSIRWHLSEGGFQEFRLLERLG---- 161 (213)
Q Consensus 86 ILV~vD~~~~~~S~~s~~Al~~A~~LA~~~~a~L~ll~V~~~~~~~~~~~~~~l~~~~~~l~~~g~~~~~v~~~v~---- 161 (213)
|||-.+..+...++.+.+++..|..|+...|.+++++.+.+.. +.. +.++..+...|.++ ...+.
T Consensus 2 ilv~~e~~~~~l~~~~~e~l~~A~~La~~~g~~v~av~~G~~~-----~~~---~~l~~~l~~~G~d~---v~~~~~~~~ 70 (164)
T PF01012_consen 2 ILVFAEHRDGRLNPVSLEALEAARRLAEALGGEVTAVVLGPAE-----EAA---EALRKALAKYGADK---VYHIDDPAL 70 (164)
T ss_dssp EEEEE-EETCEE-HHHHHHHHHHHHHHHCTTSEEEEEEEETCC-----CHH---HHHHHHHHSTTESE---EEEEE-GGG
T ss_pred EEEEEECCCCccCHHHHHHHHHHHHHHhhcCCeEEEEEEecch-----hhH---HHHhhhhhhcCCcE---EEEecCccc
Confidence 5555553223357899999999999999999999999887422 112 23334455567762 22221
Q ss_pred ccC--CchHHHHHHHHHHcCCcEEEEcccCCCCCCchHHHHHhcCCCcE
Q 028129 162 EGS--SKPTAIIGDVADELNLDLVIISMEAIHSKHVDANLLAEFIPCPV 208 (213)
Q Consensus 162 ~G~--~~p~~~Il~~A~e~~aDLIVmG~~g~~~~Gs~~~~vl~~a~cPV 208 (213)
.+. ....+.|.+.+++.++|+|++|+... ++...-.++.+..+|+
T Consensus 71 ~~~~~~~~a~~l~~~~~~~~~~lVl~~~t~~--g~~la~~lA~~L~~~~ 117 (164)
T PF01012_consen 71 AEYDPEAYADALAELIKEEGPDLVLFGSTSF--GRDLAPRLAARLGAPL 117 (164)
T ss_dssp TTC-HHHHHHHHHHHHHHHT-SEEEEESSHH--HHHHHHHHHHHHT-EE
T ss_pred cccCHHHHHHHHHHHHHhcCCCEEEEcCcCC--CCcHHHHHHHHhCCCc
Confidence 111 01456888999999999999998643 3234444444444443
No 21
>cd01992 PP-ATPase N-terminal domain of predicted ATPase of the PP-loop faimly implicated in cell cycle control [Cell division and chromosome partitioning]. This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This domain has a strongly conserved motif SGGXD at the N terminus.
Probab=95.90 E-value=0.23 Score=39.68 Aligned_cols=97 Identities=12% Similarity=0.177 Sum_probs=64.5
Q ss_pred cEEEEeeCCCCCCCHHHHHHHHHHHHHHhhcCCEEEEEEEeCCCCCChhhHHHHHHHHHHHHHhCCCCceeEEEEEcccC
Q 028129 85 HLLLPITDQNPYLSEGTRQAAATTAALAKKYGADITVVVIDERQKESLPEHENRLSSIRWHLSEGGFQEFRLLERLGEGS 164 (213)
Q Consensus 85 ~ILV~vD~~~~~~S~~s~~Al~~A~~LA~~~~a~L~ll~V~~~~~~~~~~~~~~l~~~~~~l~~~g~~~~~v~~~v~~G~ 164 (213)
+|+|++. |...|.-++..+..+....+.++.+++++...... ..+..+.+.+.....|++-+-+......+.
T Consensus 1 ~v~v~~S-----GG~DS~vl~~l~~~~~~~~~~~v~~v~id~~~~~~---~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 72 (185)
T cd01992 1 KILVAVS-----GGPDSMALLHLLSELKPRLGLRLVAVHVDHGLRPE---SDEEAAFVADLCAKLGIPLYILVVALAPKP 72 (185)
T ss_pred CEEEEeC-----CCHHHHHHHHHHHHHHHHcCCcEEEEEecCCCCch---HHHHHHHHHHHHHHcCCcEEEEeeccccCC
Confidence 5899999 89999999999988887778889999998754221 123344555555666776211100111111
Q ss_pred Cch----------HHHHHHHHHHcCCcEEEEcccCC
Q 028129 165 SKP----------TAIIGDVADELNLDLVIISMEAI 190 (213)
Q Consensus 165 ~~p----------~~~Il~~A~e~~aDLIVmG~~g~ 190 (213)
.. ...+.++|+++++|.|+.|++..
T Consensus 73 -~~~~~~~~r~~r~~~l~~~a~~~~~~~i~~Gh~~d 107 (185)
T cd01992 73 -GGNLEAAAREARYDFFAEIAKEHGADVLLTAHHAD 107 (185)
T ss_pred -CCCHHHHHHHHHHHHHHHHHHHcCCCEEEEcCCcH
Confidence 01 15677899999999999999864
No 22
>PLN03159 cation/H(+) antiporter 15; Provisional
Probab=95.85 E-value=0.074 Score=53.08 Aligned_cols=69 Identities=12% Similarity=-0.011 Sum_probs=48.4
Q ss_pred CcchhhhhhhhcccCCCCCc-ccchh----hhhhcCCCcEEEEeeCCCCCCCHHHHHHHHHHHHHHhhcCCEEEEEEEe
Q 028129 52 SLFPRFRRIGHKAKVKSPES-EINSV----AEAFTNFKHLLLPITDQNPYLSEGTRQAAATTAALAKKYGADITVVVID 125 (213)
Q Consensus 52 ~~~~~~~r~~~~a~~~~~~~-~~~~~----~~~~~~~k~ILV~vD~~~~~~S~~s~~Al~~A~~LA~~~~a~L~ll~V~ 125 (213)
.+...-+++.++|.|.+-.- -+.-. ........+|.+..= |.++.++|+.||.++|+..+.++++++..
T Consensus 594 ~~r~~n~~VL~~ApCsVgIlVDRg~~~~~~~~~~~~~~~v~~~F~-----GG~DDREALa~a~rma~~p~v~lTVirf~ 667 (832)
T PLN03159 594 AFRGVNQNVLANAPCSVGILVDRGLSGATRLASNQVSHHVAVLFF-----GGPDDREALAYAWRMSEHPGITLTVMRFI 667 (832)
T ss_pred hHHHHHHHHHccCCCCEEEEEeCCCCccccccccccceeEEEEec-----CCcchHHHHHHHHHHhcCCCeEEEEEEEE
Confidence 45566688888899877221 11000 011223458999987 78999999999999999999999999554
No 23
>cd01985 ETF The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit.
Probab=95.76 E-value=0.38 Score=38.66 Aligned_cols=111 Identities=16% Similarity=0.193 Sum_probs=64.9
Q ss_pred cEEEEeeCCCCC----CCHHHHHHHHHHHHHHhhcCCEEEEEEEeCCCCCChhhHHHHHHHHHHHHHhCCCCcee-EEEE
Q 028129 85 HLLLPITDQNPY----LSEGTRQAAATTAALAKKYGADITVVVIDERQKESLPEHENRLSSIRWHLSEGGFQEFR-LLER 159 (213)
Q Consensus 85 ~ILV~vD~~~~~----~S~~s~~Al~~A~~LA~~~~a~L~ll~V~~~~~~~~~~~~~~l~~~~~~l~~~g~~~~~-v~~~ 159 (213)
+|+|.++..... ..+.+.+++..|..|+. .+.++.++.+.... .+ .........|.+... +...
T Consensus 1 ~ilV~~e~~~~~~~~~l~~~~~e~l~~A~~l~~-~~~~v~~v~~G~~~------~~----~~~~~~~~~Gad~v~~~~~~ 69 (181)
T cd01985 1 KILVLVEHVPDTAELVLNPLDLEAVEAALRLKE-YGGEVTALVIGPPA------AE----VALREALAMGADKVLLVEDP 69 (181)
T ss_pred CEEEEEEEEcCCCccccCHhhHHHHHHHHHHhh-cCCeEEEEEECChH------HH----HHHHHHHHhCCCEEEEEecC
Confidence 466666643334 57788899999999876 56777776665421 11 111223344665311 1110
Q ss_pred EcccC--CchHHHHHHHHHHcCCcEEEEcccCCCCCCchHHHHHhcCCCcE
Q 028129 160 LGEGS--SKPTAIIGDVADELNLDLVIISMEAIHSKHVDANLLAEFIPCPV 208 (213)
Q Consensus 160 v~~G~--~~p~~~Il~~A~e~~aDLIVmG~~g~~~~Gs~~~~vl~~a~cPV 208 (213)
...+. ...++.|.+.+++.++|+|++|+... ++...-.++.+..+|+
T Consensus 70 ~~~~~~~~~~a~~l~~~i~~~~p~~Vl~g~t~~--g~~la~rlA~~L~~~~ 118 (181)
T cd01985 70 ALAGYDPEATAKALAALIKKEKPDLILAGATSI--GKQLAPRVAALLGVPQ 118 (181)
T ss_pred cccCCChHHHHHHHHHHHHHhCCCEEEECCccc--ccCHHHHHHHHhCCCc
Confidence 00111 01257788888999999999999866 5555556655555544
No 24
>PF01171 ATP_bind_3: PP-loop family; InterPro: IPR011063 This entry represents the PP-loop motif superfamily [,]. The PP-loop motif appears to be a modified version of the P-loop of nucleotide binding domain that is involved in phosphate binding []. Named PP-motif, since it appears to be a part of a previously uncharacterised ATP pyrophophatase domain. ATP sulfurylases, Escherichia coli NtrL, and Bacillus subtilis OutB consist of this domain alone. In other proteins, the pyrophosphatase domain is associated with amidotransferase domains (type I or type II), a putative citrulline-aspartate ligase domain or a nitrilase/amidase domain.; PDB: 3A2K_A 2E89_B 2E21_D 1WY5_B 1NI5_A.
Probab=95.70 E-value=0.38 Score=38.75 Aligned_cols=98 Identities=11% Similarity=0.149 Sum_probs=59.5
Q ss_pred cEEEEeeCCCCCCCHHHHHHHHHHHHHHhhcCCEEEEEEEeCCCCCChhhHHHHHHHHHHHHHhCCCCceeEEEEE--cc
Q 028129 85 HLLLPITDQNPYLSEGTRQAAATTAALAKKYGADITVVVIDERQKESLPEHENRLSSIRWHLSEGGFQEFRLLERL--GE 162 (213)
Q Consensus 85 ~ILV~vD~~~~~~S~~s~~Al~~A~~LA~~~~a~L~ll~V~~~~~~~~~~~~~~l~~~~~~l~~~g~~~~~v~~~v--~~ 162 (213)
+|+|++. |..+|...+....++.+..+-++.+++|+...... .....+.+.+..+..|++-+-..... ..
T Consensus 1 ki~va~S-----GG~DS~~Ll~~l~~~~~~~~~~~~~~~vdh~~~~~---s~~~~~~v~~~~~~~~i~~~~~~~~~~~~~ 72 (182)
T PF01171_consen 1 KILVAVS-----GGKDSMALLHLLKELRRRNGIKLIAVHVDHGLREE---SDEEAEFVEEICEQLGIPLYIVRIDEDRKK 72 (182)
T ss_dssp EEEEE-------SSHHHHHHHHHHHHHHTTTTTEEEEEEEE-STSCC---HHHHHHHHHHHHHHTT-EEEEEE--CHCCT
T ss_pred CEEEEEc-----CCHHHHHHHHHHHHHHHhcCCCeEEEEEecCCCcc---cchhHHHHHHHHHhcCCceEEEEeeeeecc
Confidence 5899999 89999999999999999888899999999765432 22223455556666677621111111 01
Q ss_pred cC--C-----chHHHHHHHHHHcCCcEEEEcccCC
Q 028129 163 GS--S-----KPTAIIGDVADELNLDLVIISMEAI 190 (213)
Q Consensus 163 G~--~-----~p~~~Il~~A~e~~aDLIVmG~~g~ 190 (213)
+. + --.+.+.++|.++++|.|++|++..
T Consensus 73 ~~~~e~~aR~~Ry~~l~~~a~~~g~~~i~~GHh~d 107 (182)
T PF01171_consen 73 GSNIEECARELRYQFLREIAKEEGCNKIALGHHLD 107 (182)
T ss_dssp TSTCHHHHHHHHHHHHHHHHHTTT-CEEE---BHH
T ss_pred cCCHHHHHHHHHHHHHHHhhhcccccceeecCcCC
Confidence 11 0 0125677899999999999999853
No 25
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed
Probab=95.56 E-value=0.13 Score=44.44 Aligned_cols=104 Identities=14% Similarity=0.198 Sum_probs=65.4
Q ss_pred CCHHHHHHHHHHHHHHhhcC-CEEEEEEEeCCCCCChhhHHHHHHHHHHHHHhCCCCc-eeEEEEEcccCCc---hHHHH
Q 028129 97 LSEGTRQAAATTAALAKKYG-ADITVVVIDERQKESLPEHENRLSSIRWHLSEGGFQE-FRLLERLGEGSSK---PTAII 171 (213)
Q Consensus 97 ~S~~s~~Al~~A~~LA~~~~-a~L~ll~V~~~~~~~~~~~~~~l~~~~~~l~~~g~~~-~~v~~~v~~G~~~---p~~~I 171 (213)
.++....|++.|++|..+.+ ++++++++.+.... .+..+ ++.+ ..|.++ +.+......|. | .+..|
T Consensus 34 iN~~D~~AlE~Alrlke~~~g~~Vtvvs~Gp~~a~----~~~~l---r~aL-AmGaD~avli~d~~~~g~-D~~~tA~~L 104 (256)
T PRK03359 34 ISQYDLNAIEAACQLKQQAAEAQVTALSVGGKALT----NAKGR---KDVL-SRGPDELIVVIDDQFEQA-LPQQTASAL 104 (256)
T ss_pred cChhhHHHHHHHHHHhhhcCCCEEEEEEECCcchh----hHHHH---HHHH-HcCCCEEEEEecCcccCc-CHHHHHHHH
Confidence 46788899999999998875 79999988875311 11112 2222 335542 22322211222 2 35677
Q ss_pred HHHHHHcCCcEEEEcccCCC-CCCchHHHHHhcCCCcEE
Q 028129 172 GDVADELNLDLVIISMEAIH-SKHVDANLLAEFIPCPVL 209 (213)
Q Consensus 172 l~~A~e~~aDLIVmG~~g~~-~~Gs~~~~vl~~a~cPVL 209 (213)
..++++.++|||++|..... .+|-+...++.....|.+
T Consensus 105 a~ai~~~~~DLVl~G~~s~D~~tgqvg~~lAe~Lg~P~v 143 (256)
T PRK03359 105 AAAAQKAGFDLILCGDGSSDLYAQQVGLLVGEILNIPAI 143 (256)
T ss_pred HHHHHHhCCCEEEEcCccccCCCCcHHHHHHHHhCCCce
Confidence 78889889999999997641 236667777766666643
No 26
>PLN03159 cation/H(+) antiporter 15; Provisional
Probab=95.15 E-value=0.43 Score=47.68 Aligned_cols=46 Identities=17% Similarity=0.271 Sum_probs=36.0
Q ss_pred chHHHHHHHHHHcCCcEEEEcccCCCC-CC----------chHHHHHhcCCCcEEEE
Q 028129 166 KPTAIIGDVADELNLDLVIISMEAIHS-KH----------VDANLLAEFIPCPVLLL 211 (213)
Q Consensus 166 ~p~~~Il~~A~e~~aDLIVmG~~g~~~-~G----------s~~~~vl~~a~cPVLvV 211 (213)
+..+.|+..|++.++++||++-|.+.. .| .....+++++||+|-+.
T Consensus 557 ~mh~dIc~~A~d~~~slIilpfhk~~~~dg~~~~~~~~~r~~n~~VL~~ApCsVgIl 613 (832)
T PLN03159 557 TMHEDVCNLAEDKRVSLIIIPFHKQQTVDGGMEATNPAFRGVNQNVLANAPCSVGIL 613 (832)
T ss_pred cHHHHHHHHHHhcCCCEEEECCCCccCCCCCccccCchHHHHHHHHHccCCCCEEEE
Confidence 589999999999999999999986421 12 12345699999999764
No 27
>cd01993 Alpha_ANH_like_II This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=94.11 E-value=1.4 Score=34.98 Aligned_cols=97 Identities=14% Similarity=0.193 Sum_probs=57.9
Q ss_pred cEEEEeeCCCCCCCHHHHHHHHHHHHHHhhc--CCEEEEEEEeCCCCCChhhHHHHHHHHHHHHHhCCCCceeEEEE---
Q 028129 85 HLLLPITDQNPYLSEGTRQAAATTAALAKKY--GADITVVVIDERQKESLPEHENRLSSIRWHLSEGGFQEFRLLER--- 159 (213)
Q Consensus 85 ~ILV~vD~~~~~~S~~s~~Al~~A~~LA~~~--~a~L~ll~V~~~~~~~~~~~~~~l~~~~~~l~~~g~~~~~v~~~--- 159 (213)
+|+|++. |...|.-++..+..+.... +-++.+++++.......+ ...+.+++.....|++-..+...
T Consensus 1 ~v~v~~S-----GG~DS~~ll~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~---~~~~~~~~~~~~~~i~~~~~~~~~~~ 72 (185)
T cd01993 1 RILVALS-----GGKDSLVLLHVLKKLQRRYPYGFELEALTVDEGIPGYRD---ESLEVVERLAEELGIELEIVSFKEEY 72 (185)
T ss_pred CEEEEeC-----CCHHHHHHHHHHHHHHhhcCCCeEEEEEEEECCCCCCcH---HHHHHHHHHHHHcCCceEEEehhhhc
Confidence 5899999 8888888888887776655 567888888865432111 11223333344445541111110
Q ss_pred -------EcccC-------CchHHHHHHHHHHcCCcEEEEcccC
Q 028129 160 -------LGEGS-------SKPTAIIGDVADELNLDLVIISMEA 189 (213)
Q Consensus 160 -------v~~G~-------~~p~~~Il~~A~e~~aDLIVmG~~g 189 (213)
...+. .--...+.++|++++++.|+.|++.
T Consensus 73 ~~~~~~~~~~~~~~~~~c~~~r~~~l~~~a~~~g~~~l~~Gh~~ 116 (185)
T cd01993 73 TDDIEVKKRGGKSPCSLCGVLRRGLLNKIAKELGADKLATGHNL 116 (185)
T ss_pred chhhhhhccCCCCCCCccHHHHHHHHHHHHHHcCCCEEEEcCCh
Confidence 00000 0123567788999999999999985
No 28
>COG2086 FixA Electron transfer flavoprotein, beta subunit [Energy production and conversion]
Probab=93.54 E-value=0.57 Score=40.50 Aligned_cols=102 Identities=22% Similarity=0.295 Sum_probs=63.9
Q ss_pred CCHHHHHHHHHHHHHHh-hcCCEEEEEEEeCCCCCChhhHHHHHHHHHHHHHhCCCCc-eeEEEEEcccC--CchHHHHH
Q 028129 97 LSEGTRQAAATTAALAK-KYGADITVVVIDERQKESLPEHENRLSSIRWHLSEGGFQE-FRLLERLGEGS--SKPTAIIG 172 (213)
Q Consensus 97 ~S~~s~~Al~~A~~LA~-~~~a~L~ll~V~~~~~~~~~~~~~~l~~~~~~l~~~g~~~-~~v~~~v~~G~--~~p~~~Il 172 (213)
.++....|++.|++|.. .++++++++++.++. .+..+.+ ....|.++ +.+...-..|. -..+..|.
T Consensus 35 in~~D~~AvEeAlrLke~~~~~eV~vlt~Gp~~------a~~~lr~----aLAmGaDraili~d~~~~~~d~~~ta~~La 104 (260)
T COG2086 35 INPFDLNAVEEALRLKEKGYGGEVTVLTMGPPQ------AEEALRE----ALAMGADRAILITDRAFAGADPLATAKALA 104 (260)
T ss_pred cChhhHHHHHHHHHhhccCCCceEEEEEecchh------hHHHHHH----HHhcCCCeEEEEecccccCccHHHHHHHHH
Confidence 35677899999999998 699999999988743 2222222 33446552 12221112222 03457888
Q ss_pred HHHHHcCCcEEEEcccCCC-CCCchHHHHHhcCCCcE
Q 028129 173 DVADELNLDLVIISMEAIH-SKHVDANLLAEFIPCPV 208 (213)
Q Consensus 173 ~~A~e~~aDLIVmG~~g~~-~~Gs~~~~vl~~a~cPV 208 (213)
.++++.+.|||++|..... .+|-+...++..-..|.
T Consensus 105 a~~~~~~~~LVl~G~qa~D~~t~qvg~~lAe~Lg~P~ 141 (260)
T COG2086 105 AAVKKIGPDLVLTGKQAIDGDTGQVGPLLAELLGWPQ 141 (260)
T ss_pred HHHHhcCCCEEEEecccccCCccchHHHHHHHhCCce
Confidence 8999999999999997641 13445555554444444
No 29
>cd01715 ETF_alpha The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin.
Probab=91.25 E-value=6.3 Score=31.22 Aligned_cols=103 Identities=17% Similarity=0.125 Sum_probs=56.0
Q ss_pred cEEEEeeCCCCCCCHHHHHHHHHHHHHHhhcCCEEEEEEEeCCCCCChhhHHHHHHHHHHHHHhCCCCceeEEEEEc---
Q 028129 85 HLLLPITDQNPYLSEGTRQAAATTAALAKKYGADITVVVIDERQKESLPEHENRLSSIRWHLSEGGFQEFRLLERLG--- 161 (213)
Q Consensus 85 ~ILV~vD~~~~~~S~~s~~Al~~A~~LA~~~~a~L~ll~V~~~~~~~~~~~~~~l~~~~~~l~~~g~~~~~v~~~v~--- 161 (213)
+|+|-.+.++....+.+.+++..| ++.+.++.++.+.... +.. ...+...|... ...+.
T Consensus 1 ~ilV~~E~~~g~l~~~s~el~~~A----~~l~~~v~~v~~G~~~-------~~~----~~~~~~~Gad~---v~~~~~~~ 62 (168)
T cd01715 1 SVLVLAEHRNGELRELTLEAVTAA----RKLGGEVTALVIGSGA-------EAV----AAALKAYGADK---VLVAEDPA 62 (168)
T ss_pred CEEEEEEecCCChHHHHHHHHHHH----HHhCCCEEEEEECCCh-------HHH----HHHHHhcCCCE---EEEecChh
Confidence 356666643223445555666654 4444567666665432 111 12234456652 11111
Q ss_pred ----ccCCchHHHHHHHHHHcCCcEEEEcccCCCCCCchHHHHHhcCCCcE
Q 028129 162 ----EGSSKPTAIIGDVADELNLDLVIISMEAIHSKHVDANLLAEFIPCPV 208 (213)
Q Consensus 162 ----~G~~~p~~~Il~~A~e~~aDLIVmG~~g~~~~Gs~~~~vl~~a~cPV 208 (213)
..+ ...+.|.+.++++++|+|++|.... ++...-.++.+..+|+
T Consensus 63 ~~~~~~~-~~a~al~~~i~~~~p~~Vl~~~t~~--g~~la~rlAa~L~~~~ 110 (168)
T cd01715 63 LAHYLAE-PYAPALVALAKKEKPSHILAGATSF--GKDLAPRVAAKLDVGL 110 (168)
T ss_pred hcccChH-HHHHHHHHHHHhcCCCEEEECCCcc--ccchHHHHHHHhCCCc
Confidence 011 2457788888999999999999765 4455555554444444
No 30
>COG0037 MesJ tRNA(Ile)-lysidine synthase MesJ [Cell cycle control, cell division, chromosome partitioning]
Probab=89.66 E-value=9 Score=32.88 Aligned_cols=97 Identities=12% Similarity=0.171 Sum_probs=59.3
Q ss_pred CcEEEEeeCCCCCCCHHHHHHHHHHHHHHhhcCCEEEEEEEeCCCCCChhhHHHHHHHHHHHHHhCCCCcee--EEEEEc
Q 028129 84 KHLLLPITDQNPYLSEGTRQAAATTAALAKKYGADITVVVIDERQKESLPEHENRLSSIRWHLSEGGFQEFR--LLERLG 161 (213)
Q Consensus 84 k~ILV~vD~~~~~~S~~s~~Al~~A~~LA~~~~a~L~ll~V~~~~~~~~~~~~~~l~~~~~~l~~~g~~~~~--v~~~v~ 161 (213)
.+|+|++. |..+|.-++.....+... .++.+++|+.......... .+.........|+..+- +.....
T Consensus 22 ~~ilVavS-----GGkDS~~ll~~L~~l~~~--~~~~a~~Vd~~~~~~~~~~---~~~~~~~~~~~~~~~~v~~~~~~~~ 91 (298)
T COG0037 22 YKILVAVS-----GGKDSLALLHLLKELGRR--IEVEAVHVDHGLRGYSDQE---AELVEKLCEKLGIPLIVERVTDDLG 91 (298)
T ss_pred CeEEEEeC-----CChHHHHHHHHHHHhccC--ceEEEEEecCCCCCccchH---HHHHHHHHHHhCCceEEEEEEeecc
Confidence 79999999 889898888877776654 6788889988654321222 22233333334543111 111111
Q ss_pred c----cC--C-----chHHHHHHHHHHcCCcEEEEcccCC
Q 028129 162 E----GS--S-----KPTAIIGDVADELNLDLVIISMEAI 190 (213)
Q Consensus 162 ~----G~--~-----~p~~~Il~~A~e~~aDLIVmG~~g~ 190 (213)
. |. + --...+.++|+++++|.|+.|++..
T Consensus 92 ~~~~~~~~~c~~c~~~R~~~l~~~a~~~g~~~i~tgH~~d 131 (298)
T COG0037 92 RETLDGKSICAACRRLRRGLLYKIAKELGADKIATGHHLD 131 (298)
T ss_pred ccccCCCChhHHHHHHHHHHHHHHHHHcCCCeEEeccCcH
Confidence 0 00 0 1235577889999999999999875
No 31
>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]
Probab=89.46 E-value=3 Score=34.65 Aligned_cols=88 Identities=17% Similarity=0.129 Sum_probs=57.9
Q ss_pred CcEEEEeeCCCCCCCHHHHHHHHHHHHHHhhcCCEEEEEEEeCCCCCChhhHHHHHHHHHHHHHhCCCCceeEEEEEccc
Q 028129 84 KHLLLPITDQNPYLSEGTRQAAATTAALAKKYGADITVVVIDERQKESLPEHENRLSSIRWHLSEGGFQEFRLLERLGEG 163 (213)
Q Consensus 84 k~ILV~vD~~~~~~S~~s~~Al~~A~~LA~~~~a~L~ll~V~~~~~~~~~~~~~~l~~~~~~l~~~g~~~~~v~~~v~~G 163 (213)
++|.|-+. |+-.+.+|+-.|+. ....++++.+|..+.... ...++.++.|+..+.+...-..+
T Consensus 1 ~ki~VlaS-----G~GSNlqaiida~~-~~~~~a~i~~Visd~~~A-----------~~lerA~~~gIpt~~~~~k~~~~ 63 (200)
T COG0299 1 KKIAVLAS-----GNGSNLQAIIDAIK-GGKLDAEIVAVISDKADA-----------YALERAAKAGIPTVVLDRKEFPS 63 (200)
T ss_pred CeEEEEEe-----CCcccHHHHHHHHh-cCCCCcEEEEEEeCCCCC-----------HHHHHHHHcCCCEEEeccccCCC
Confidence 36777777 67778888888877 444578888887776432 22345666788843322222111
Q ss_pred CCchHHHHHHHHHHcCCcEEEEccc
Q 028129 164 SSKPTAIIGDVADELNLDLVIISME 188 (213)
Q Consensus 164 ~~~p~~~Il~~A~e~~aDLIVmG~~ 188 (213)
...-..+|.+..++.++|+||+...
T Consensus 64 r~~~d~~l~~~l~~~~~dlvvLAGy 88 (200)
T COG0299 64 REAFDRALVEALDEYGPDLVVLAGY 88 (200)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcch
Confidence 1024578999999999999999774
No 32
>COG0041 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]
Probab=88.30 E-value=3.6 Score=32.83 Aligned_cols=70 Identities=19% Similarity=0.281 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHhCCCCceeEEEEEcccCCchHHHHHHH---HHHcCCcEEEEcccCCCCCCchHHHHHhcCCCcEEEEcC
Q 028129 137 NRLSSIRWHLSEGGFQEFRLLERLGEGSSKPTAIIGDV---ADELNLDLVIISMEAIHSKHVDANLLAEFIPCPVLLLPL 213 (213)
Q Consensus 137 ~~l~~~~~~l~~~g~~~~~v~~~v~~G~~~p~~~Il~~---A~e~~aDLIVmG~~g~~~~Gs~~~~vl~~a~cPVLvVp~ 213 (213)
+.+++..+.+++.|++ ++.++.... ..-+.+.+| |++.+++.||-|+-|- ..+ .-.++..++.||+=||.
T Consensus 16 ~~mk~Aa~~L~~fgi~---ye~~VvSAH-RTPe~m~~ya~~a~~~g~~viIAgAGgA--AHL-PGmvAa~T~lPViGVPv 88 (162)
T COG0041 16 DTMKKAAEILEEFGVP---YEVRVVSAH-RTPEKMFEYAEEAEERGVKVIIAGAGGA--AHL-PGMVAAKTPLPVIGVPV 88 (162)
T ss_pred HHHHHHHHHHHHcCCC---eEEEEEecc-CCHHHHHHHHHHHHHCCCeEEEecCcch--hhc-chhhhhcCCCCeEeccC
Confidence 4466667778888988 666665554 444555554 5677888899988653 211 12356778888888773
No 33
>TIGR00591 phr2 photolyase PhrII. All proteins in this family for which functions are known are DNA-photolyases used for the direct repair of UV irradiation induced DNA damage. Some repair 6-4 photoproducts while others repair cyclobutane pyrimidine dimers. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=87.18 E-value=5.8 Score=36.66 Aligned_cols=85 Identities=13% Similarity=-0.012 Sum_probs=58.9
Q ss_pred CCHHHHHHHHHHHHHHhhcCCEEEEEEEeCCCCCCh-h----hHHHHHHHHHHHHHhCCCCceeEEEEEcccCCchHHHH
Q 028129 97 LSEGTRQAAATTAALAKKYGADITVVVIDERQKESL-P----EHENRLSSIRWHLSEGGFQEFRLLERLGEGSSKPTAII 171 (213)
Q Consensus 97 ~S~~s~~Al~~A~~LA~~~~a~L~ll~V~~~~~~~~-~----~~~~~l~~~~~~l~~~g~~~~~v~~~v~~G~~~p~~~I 171 (213)
+.-....||..|+..|...+..|.++.+.++..... . -..+.+.++.+.+++.|.. .. +..|+ +.+.|
T Consensus 33 LRl~DN~aL~~A~~~a~~~~~~vl~vyi~dp~~~~~~~~r~~Fl~esL~~L~~~L~~~g~~---L~--v~~g~--~~~~l 105 (454)
T TIGR00591 33 QRVQDNWALIAAQTLALKKKLPLHVCFCLVDFFLAATRRHYFFMLGGLDEVANECERLIIP---FH--LLDGP--PKELL 105 (454)
T ss_pred hhccCCHHHHHHHHHHHHcCCCEEEEEEeCCCcccccHHHHHHHHHHHHHHHHHHHHcCCc---eE--EeecC--hHHHH
Confidence 455566888888887766566788886665432211 1 1223455666677777877 44 34586 99999
Q ss_pred HHHHHHcCCcEEEEccc
Q 028129 172 GDVADELNLDLVIISME 188 (213)
Q Consensus 172 l~~A~e~~aDLIVmG~~ 188 (213)
.+.+++++++.|+.-..
T Consensus 106 ~~l~~~~~i~~V~~~~~ 122 (454)
T TIGR00591 106 PYFVDLHAAAAVVTDFS 122 (454)
T ss_pred HHHHHHcCCCEEEEecc
Confidence 99999999999998664
No 34
>cd01714 ETF_beta The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit.
Probab=87.16 E-value=15 Score=30.15 Aligned_cols=100 Identities=19% Similarity=0.267 Sum_probs=56.8
Q ss_pred CCHHHHHHHHHHHHHHhhcCCEEEEEEEeCCCCCChhhHHHHHHHHHHHHHhCCCCcee-EEE-EEcc--cCCchHHHHH
Q 028129 97 LSEGTRQAAATTAALAKKYGADITVVVIDERQKESLPEHENRLSSIRWHLSEGGFQEFR-LLE-RLGE--GSSKPTAIIG 172 (213)
Q Consensus 97 ~S~~s~~Al~~A~~LA~~~~a~L~ll~V~~~~~~~~~~~~~~l~~~~~~l~~~g~~~~~-v~~-~v~~--G~~~p~~~Il 172 (213)
.++.+..++..+..++++.+.++..+.+.... .+ .....+...|..... +.. .... .+ ..+..|.
T Consensus 33 i~e~~~~~l~ea~~la~~~g~~v~av~~G~~~------~~----~~~~~l~~~G~d~V~~~~~~~~~~~~~e-~~a~al~ 101 (202)
T cd01714 33 INPYDEYAVEEALRLKEKYGGEVTVVSMGPPQ------AE----EALREALAMGADRAILVSDRAFAGADTL-ATAKALA 101 (202)
T ss_pred CChHhHHHHHHHHHhhhhcCCEEEEEEECCHH------HH----HHHHHHHHcCCCEEEEEecccccCCChH-HHHHHHH
Confidence 46778888999999988888887777665421 11 112223345665311 111 0000 11 2356788
Q ss_pred HHHHHcCCcEEEEcccCCCC-CCchHHHHHhcCCCc
Q 028129 173 DVADELNLDLVIISMEAIHS-KHVDANLLAEFIPCP 207 (213)
Q Consensus 173 ~~A~e~~aDLIVmG~~g~~~-~Gs~~~~vl~~a~cP 207 (213)
+.+++.++|+|++|+..... ++...-.++.+..+|
T Consensus 102 ~~i~~~~p~lVL~~~t~~~~~grdlaprlAarLga~ 137 (202)
T cd01714 102 AAIKKIGVDLILTGKQSIDGDTGQVGPLLAELLGWP 137 (202)
T ss_pred HHHHHhCCCEEEEcCCcccCCcCcHHHHHHHHhCCC
Confidence 88888899999999865311 334444554444444
No 35
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, PurE protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, an N5-CAIR mutase.
Probab=86.92 E-value=7.4 Score=31.13 Aligned_cols=70 Identities=17% Similarity=0.252 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHhCCCCceeEEEEEcccCCchHHHHHHH---HHHcCCcEEEEcccCCCCCCchHHHHHhcCCCcEEEEcC
Q 028129 137 NRLSSIRWHLSEGGFQEFRLLERLGEGSSKPTAIIGDV---ADELNLDLVIISMEAIHSKHVDANLLAEFIPCPVLLLPL 213 (213)
Q Consensus 137 ~~l~~~~~~l~~~g~~~~~v~~~v~~G~~~p~~~Il~~---A~e~~aDLIVmG~~g~~~~Gs~~~~vl~~a~cPVLvVp~ 213 (213)
..++++...+++.|++ ++..+..-. ...+.+.+| +++.+++.||.++-+. +--.-.+...+..||+-||.
T Consensus 12 ~~~~~a~~~L~~~gi~---~dv~V~SaH-Rtp~~~~~~~~~a~~~g~~viIa~AG~a---a~Lpgvva~~t~~PVIgvP~ 84 (156)
T TIGR01162 12 PTMKKAADILEEFGIP---YELRVVSAH-RTPELMLEYAKEAEERGIKVIIAGAGGA---AHLPGMVAALTPLPVIGVPV 84 (156)
T ss_pred HHHHHHHHHHHHcCCC---eEEEEECcc-cCHHHHHHHHHHHHHCCCeEEEEeCCcc---chhHHHHHhccCCCEEEecC
Confidence 3456666777888888 554443333 333444444 5566888888877543 33444567788888888773
No 36
>PRK10696 tRNA 2-thiocytidine biosynthesis protein TtcA; Provisional
Probab=86.26 E-value=17 Score=30.98 Aligned_cols=95 Identities=16% Similarity=0.193 Sum_probs=59.0
Q ss_pred CCcEEEEeeCCCCCCCHHHHHHHHHHHHHHhhcC--CEEEEEEEeCCCCCChhhHHHHHHHHHHHHHhCCCCceeEEEEE
Q 028129 83 FKHLLLPITDQNPYLSEGTRQAAATTAALAKKYG--ADITVVVIDERQKESLPEHENRLSSIRWHLSEGGFQEFRLLERL 160 (213)
Q Consensus 83 ~k~ILV~vD~~~~~~S~~s~~Al~~A~~LA~~~~--a~L~ll~V~~~~~~~~~~~~~~l~~~~~~l~~~g~~~~~v~~~v 160 (213)
-.+|+|++. |...|...+.....+....+ -++..++++..... .+ . + .+++..++.|++ +.+...-
T Consensus 29 ~~kilVa~S-----GG~DS~~LL~ll~~l~~~~~~~~~l~av~vd~g~~~-~~-~-~---~~~~~~~~lgI~-~~v~~~~ 96 (258)
T PRK10696 29 GDRVMVCLS-----GGKDSYTLLDILLNLQKRAPINFELVAVNLDQKQPG-FP-E-H---VLPEYLESLGVP-YHIEEQD 96 (258)
T ss_pred CCEEEEEec-----CCHHHHHHHHHHHHHHHhCCCCeEEEEEEecCCCCC-CC-H-H---HHHHHHHHhCCC-EEEEEec
Confidence 458999999 88888888888777766543 46777788764321 11 1 1 123344555766 2221110
Q ss_pred ---------cccCCc--------hHHHHHHHHHHcCCcEEEEcccCC
Q 028129 161 ---------GEGSSK--------PTAIIGDVADELNLDLVIISMEAI 190 (213)
Q Consensus 161 ---------~~G~~~--------p~~~Il~~A~e~~aDLIVmG~~g~ 190 (213)
..|. . -...+.++|+++++|.|++|++..
T Consensus 97 ~~~~~~~~~~~~~-~~c~~c~~~R~~~l~~~a~~~g~~~Ia~GH~~d 142 (258)
T PRK10696 97 TYSIVKEKIPEGK-TTCSLCSRLRRGILYRTARELGATKIALGHHRD 142 (258)
T ss_pred chhhhhhhhccCC-ChhHHHHHHHHHHHHHHHHHcCCCEEEEcCchH
Confidence 0121 1 125677889999999999999864
No 37
>PRK05253 sulfate adenylyltransferase subunit 2; Provisional
Probab=85.40 E-value=12 Score=32.97 Aligned_cols=97 Identities=11% Similarity=0.131 Sum_probs=59.9
Q ss_pred cCCCcEEEEeeCCCCCCCHHHHHHHHHHHHHHhhcCCEEEEEEEeCCCCCChhhHHHHHHHHHHHHHhCCCCceeEEEE-
Q 028129 81 TNFKHLLLPITDQNPYLSEGTRQAAATTAALAKKYGADITVVVIDERQKESLPEHENRLSSIRWHLSEGGFQEFRLLER- 159 (213)
Q Consensus 81 ~~~k~ILV~vD~~~~~~S~~s~~Al~~A~~LA~~~~a~L~ll~V~~~~~~~~~~~~~~l~~~~~~l~~~g~~~~~v~~~- 159 (213)
..|.++++.+. |...|.-.+..+.......+-.+.+++++.... +++..+..++ ..++.|++ +...
T Consensus 25 ~~f~~~vv~~S-----GGKDS~VLL~La~ka~~~~~~~~~vl~iDTG~~--FpEt~ef~d~---~a~~~gl~---l~v~~ 91 (301)
T PRK05253 25 AEFENPVMLYS-----IGKDSSVMLHLARKAFYPGKLPFPLLHVDTGWK--FPEMIEFRDR---RAKELGLE---LIVHS 91 (301)
T ss_pred HhCCCEEEEec-----CCHHHHHHHHHHHHhhcccCCCeeEEEEeCCCC--CHHHHHHHHH---HHHHhCCC---EEEEe
Confidence 44789999999 899999888888665443345678889986542 2322222333 23333554 2221
Q ss_pred ----EcccC----------C--chHHHHHHHHHHcCCcEEEEcccCC
Q 028129 160 ----LGEGS----------S--KPTAIIGDVADELNLDLVIISMEAI 190 (213)
Q Consensus 160 ----v~~G~----------~--~p~~~Il~~A~e~~aDLIVmG~~g~ 190 (213)
+..|. | --...+.++++++++|.++.|.|..
T Consensus 92 ~~~~i~~g~~~~~~~~~~cC~~lK~~pL~~al~e~g~da~~~G~RrD 138 (301)
T PRK05253 92 NPEGIARGINPFRHGSAKHTNAMKTEGLKQALEKYGFDAAFGGARRD 138 (301)
T ss_pred ChHHHhcCCCCCCCChHHHHHHHHHHHHHHHHHHcCCCEEEeccccc
Confidence 11121 0 0125677889999999999999864
No 38
>PLN00200 argininosuccinate synthase; Provisional
Probab=83.84 E-value=26 Score=32.25 Aligned_cols=96 Identities=17% Similarity=0.216 Sum_probs=58.9
Q ss_pred cCCCcEEEEeeCCCCCCCHHHHHHHHHHHHHHhhcCCEEEEEEEeCCCCCChhhHHHHHHHHHHHHHhCCCCceeEEE-E
Q 028129 81 TNFKHLLLPITDQNPYLSEGTRQAAATTAALAKKYGADITVVVIDERQKESLPEHENRLSSIRWHLSEGGFQEFRLLE-R 159 (213)
Q Consensus 81 ~~~k~ILV~vD~~~~~~S~~s~~Al~~A~~LA~~~~a~L~ll~V~~~~~~~~~~~~~~l~~~~~~l~~~g~~~~~v~~-~ 159 (213)
.|.++|+|++. |.-.+.-++.++.. ++|.+++.++++.... .+.++.+++...+.|+..+.+.. .
T Consensus 3 ~~~~kVvva~S-----GGlDSsvla~~L~e---~~G~eViav~id~Gq~------~~el~~a~~~A~~lGi~~~~v~dl~ 68 (404)
T PLN00200 3 GKLNKVVLAYS-----GGLDTSVILKWLRE---NYGCEVVCFTADVGQG------IEELEGLEAKAKASGAKQLVVKDLR 68 (404)
T ss_pred CCCCeEEEEEe-----CCHHHHHHHHHHHH---hhCCeEEEEEEECCCC------hHHHHHHHHHHHHcCCCEEEEEeCH
Confidence 34679999999 77777766666633 3477899888887642 11233444444444554211100 0
Q ss_pred ----------------Eccc----CC-----chHHHHHHHHHHcCCcEEEEcccCC
Q 028129 160 ----------------LGEG----SS-----KPTAIIGDVADELNLDLVIISMEAI 190 (213)
Q Consensus 160 ----------------v~~G----~~-----~p~~~Il~~A~e~~aDLIVmG~~g~ 190 (213)
..+| .+ -.+..++++|++.++|.|.=|+.++
T Consensus 69 ~ef~~~~i~p~i~~Na~ye~~Y~~~tsl~Rp~i~~~lv~~A~~~G~~~VahG~tgk 124 (404)
T PLN00200 69 EEFVRDYIFPCLRANAIYEGKYLLGTSMARPLIAKAMVDIAKEVGADAVAHGATGK 124 (404)
T ss_pred HHHHHhhcCHHHHcCCcccceeccccchhhHHHHHHHHHHHHHcCCCEEEeCCcCC
Confidence 0011 00 1367889999999999999999875
No 39
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=83.69 E-value=11 Score=29.90 Aligned_cols=69 Identities=16% Similarity=0.180 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHhCCCCceeEEEEEcccCCchHHHHHHHHHHc---CCcEEEEcccCCCCCCchHHHHHhcCCCcEEEEc
Q 028129 137 NRLSSIRWHLSEGGFQEFRLLERLGEGSSKPTAIIGDVADEL---NLDLVIISMEAIHSKHVDANLLAEFIPCPVLLLP 212 (213)
Q Consensus 137 ~~l~~~~~~l~~~g~~~~~v~~~v~~G~~~p~~~Il~~A~e~---~aDLIVmG~~g~~~~Gs~~~~vl~~a~cPVLvVp 212 (213)
...+++...+++.|+. ++.++.... .-.+.+.+++++. ++|.||.++-.. .+ -...+...+.+||+-||
T Consensus 14 ~~~~~a~~~L~~~gi~---~~~~V~saH-R~p~~l~~~~~~~~~~~~~viIa~AG~~--a~-Lpgvva~~t~~PVIgvP 85 (150)
T PF00731_consen 14 PIAEEAAKTLEEFGIP---YEVRVASAH-RTPERLLEFVKEYEARGADVIIAVAGMS--AA-LPGVVASLTTLPVIGVP 85 (150)
T ss_dssp HHHHHHHHHHHHTT-E---EEEEE--TT-TSHHHHHHHHHHTTTTTESEEEEEEESS-----HHHHHHHHSSS-EEEEE
T ss_pred HHHHHHHHHHHHcCCC---EEEEEEecc-CCHHHHHHHHHHhccCCCEEEEEECCCc--cc-chhhheeccCCCEEEee
Confidence 4466777778888877 666665555 4566777777664 568777776543 33 35567888899998887
No 40
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=83.28 E-value=33 Score=32.03 Aligned_cols=96 Identities=22% Similarity=0.288 Sum_probs=64.1
Q ss_pred cEEEEeeCCCCCCCHHHHHHHHHHHHHHhhcCCEEEEEEEeCCCCCChhhHHHHHHHHHHHHHhCCCCceeEEEEEcccC
Q 028129 85 HLLLPITDQNPYLSEGTRQAAATTAALAKKYGADITVVVIDERQKESLPEHENRLSSIRWHLSEGGFQEFRLLERLGEGS 164 (213)
Q Consensus 85 ~ILV~vD~~~~~~S~~s~~Al~~A~~LA~~~~a~L~ll~V~~~~~~~~~~~~~~l~~~~~~l~~~g~~~~~v~~~v~~G~ 164 (213)
-.++++- ||-.+..+-..|.+|-+ .+-++-++..+...+ ...+.++....+.+++-|. . ..+.
T Consensus 103 ImmvGLQ-----GsGKTTt~~KLA~~lkk-~~~kvllVaaD~~Rp-------AA~eQL~~La~q~~v~~f~---~-~~~~ 165 (451)
T COG0541 103 ILMVGLQ-----GSGKTTTAGKLAKYLKK-KGKKVLLVAADTYRP-------AAIEQLKQLAEQVGVPFFG---S-GTEK 165 (451)
T ss_pred EEEEecc-----CCChHhHHHHHHHHHHH-cCCceEEEecccCCh-------HHHHHHHHHHHHcCCceec---C-CCCC
Confidence 3566777 89999999999999988 677777776665332 2233444445566777222 2 2233
Q ss_pred CchH---HHHHHHHHHcCCcEEEEcccCCCCCCchHHHH
Q 028129 165 SKPT---AIIGDVADELNLDLVIISMEAIHSKHVDANLL 200 (213)
Q Consensus 165 ~~p~---~~Il~~A~e~~aDLIVmG~~g~~~~Gs~~~~v 200 (213)
+|. ..=+++|++..+|+||+-+-|| -+....++
T Consensus 166 -~Pv~Iak~al~~ak~~~~DvvIvDTAGR--l~ide~Lm 201 (451)
T COG0541 166 -DPVEIAKAALEKAKEEGYDVVIVDTAGR--LHIDEELM 201 (451)
T ss_pred -CHHHHHHHHHHHHHHcCCCEEEEeCCCc--ccccHHHH
Confidence 455 4456788999999999999988 55555444
No 41
>PRK13820 argininosuccinate synthase; Provisional
Probab=82.93 E-value=27 Score=32.08 Aligned_cols=94 Identities=17% Similarity=0.181 Sum_probs=57.9
Q ss_pred CCCcEEEEeeCCCCCCCHHHHHHHHHHHHHHhhcCC-EEEEEEEeCCCCCChhhHHHHHHHHHHHHHhCCCCceeEE-EE
Q 028129 82 NFKHLLLPITDQNPYLSEGTRQAAATTAALAKKYGA-DITVVVIDERQKESLPEHENRLSSIRWHLSEGGFQEFRLL-ER 159 (213)
Q Consensus 82 ~~k~ILV~vD~~~~~~S~~s~~Al~~A~~LA~~~~a-~L~ll~V~~~~~~~~~~~~~~l~~~~~~l~~~g~~~~~v~-~~ 159 (213)
++++|+|++. |.-.+.-++.++. ..+|. ++..++++..... ..++.+++...+.|++ +.+. ..
T Consensus 1 ~~~kVvvA~S-----GGvDSsvll~lL~---e~~g~~~Viav~vd~g~~~------~e~~~a~~~a~~lGi~-~~vvd~~ 65 (394)
T PRK13820 1 MMKKVVLAYS-----GGLDTSVCVPLLK---EKYGYDEVITVTVDVGQPE------EEIKEAEEKAKKLGDK-HYTIDAK 65 (394)
T ss_pred CCCeEEEEEe-----CcHHHHHHHHHHH---HhcCCCEEEEEEEECCCCh------HHHHHHHHHHHHcCCC-EEEEeCH
Confidence 4689999999 7777777776653 34565 8998888864321 1233344444555553 1110 00
Q ss_pred --E--------------ccc--------CCchHHHHHHHHHHcCCcEEEEcccCC
Q 028129 160 --L--------------GEG--------SSKPTAIIGDVADELNLDLVIISMEAI 190 (213)
Q Consensus 160 --v--------------~~G--------~~~p~~~Il~~A~e~~aDLIVmG~~g~ 190 (213)
. ..| ..-.+..+.++|+++++|.|.-|+.++
T Consensus 66 eef~~~~i~~~i~~n~~~~gYpl~~~~cR~~i~~~l~e~A~e~G~~~IA~G~t~~ 120 (394)
T PRK13820 66 EEFAKDYIFPAIKANALYEGYPLGTALARPLIAEKIVEVAEKEGASAIAHGCTGK 120 (394)
T ss_pred HHHHHHHHHHHHHhCccccCCcCcHHHHHHHHHHHHHHHHHHcCCCEEEECCCCC
Confidence 0 011 102356788999999999999999654
No 42
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=82.33 E-value=14 Score=30.08 Aligned_cols=35 Identities=34% Similarity=0.457 Sum_probs=28.7
Q ss_pred CCcEEEEeeCCCCCCCHHHHHHHHHHHHHHhhcCCEEEEEE
Q 028129 83 FKHLLLPITDQNPYLSEGTRQAAATTAALAKKYGADITVVV 123 (213)
Q Consensus 83 ~k~ILV~vD~~~~~~S~~s~~Al~~A~~LA~~~~a~L~ll~ 123 (213)
+|+|++++. ||-.+.++.++...|.+ .|.+++++.
T Consensus 1 ~k~Ill~vt-----Gsiaa~~~~~li~~L~~-~g~~V~vv~ 35 (182)
T PRK07313 1 MKNILLAVS-----GSIAAYKAADLTSQLTK-RGYQVTVLM 35 (182)
T ss_pred CCEEEEEEe-----ChHHHHHHHHHHHHHHH-CCCEEEEEE
Confidence 579999999 89999999888888854 577877654
No 43
>TIGR00268 conserved hypothetical protein TIGR00268. The N-terminal region of the model shows similarity to Argininosuccinate synthase proteins using PSI-blast and using the recognize protein identification server.
Probab=82.25 E-value=24 Score=29.90 Aligned_cols=96 Identities=15% Similarity=0.129 Sum_probs=56.8
Q ss_pred hhcCCCcEEEEeeCCCCCCCHHHHHHHHHHHHHHhhcCCEEEEEEEeCCCCCChhhHHHHHHHHHHHHHhCCCCceeEEE
Q 028129 79 AFTNFKHLLLPITDQNPYLSEGTRQAAATTAALAKKYGADITVVVIDERQKESLPEHENRLSSIRWHLSEGGFQEFRLLE 158 (213)
Q Consensus 79 ~~~~~k~ILV~vD~~~~~~S~~s~~Al~~A~~LA~~~~a~L~ll~V~~~~~~~~~~~~~~l~~~~~~l~~~g~~~~~v~~ 158 (213)
.+..+++++|++. |.-.|.-++..+.+. |.++..++++.+... . ...+.+++.....|++.+-+..
T Consensus 8 ~l~~~~~vlVa~S-----GGvDSs~ll~la~~~----g~~v~av~~~~~~~~---~--~e~~~a~~~a~~lgi~~~ii~~ 73 (252)
T TIGR00268 8 FLKEFKKVLIAYS-----GGVDSSLLAAVCSDA----GTEVLAITVVSPSIS---P--RELEDAIIIAKEIGVNHEFVKI 73 (252)
T ss_pred HHHhcCCEEEEec-----CcHHHHHHHHHHHHh----CCCEEEEEecCCCCC---H--HHHHHHHHHHHHcCCCEEEEEc
Confidence 4556789999999 777787777666443 667888887653221 1 1223334444555665111110
Q ss_pred EE-----ccc---------CCchHHHHHHHHHHcCCcEEEEcccC
Q 028129 159 RL-----GEG---------SSKPTAIIGDVADELNLDLVIISMEA 189 (213)
Q Consensus 159 ~v-----~~G---------~~~p~~~Il~~A~e~~aDLIVmG~~g 189 (213)
.. ..+ . .....+.++|++++++.|+.|++.
T Consensus 74 ~~~~~~~~~n~~~~c~~ck~-~~~~~l~~~A~~~g~~~I~~G~n~ 117 (252)
T TIGR00268 74 DKMINPFRANVEERCYFCKK-MVLSILVKEAEKRGYDVVVDGTNA 117 (252)
T ss_pred HHHHHHHHhCCCcccchhhH-HHHHHHHHHHHHcCCCEEEECCCC
Confidence 00 000 0 134566788999999999999864
No 44
>PF00875 DNA_photolyase: DNA photolyase from Prosite.; InterPro: IPR006050 DNA photolyases are enzymes that bind to DNA containing pyrimidine dimers: on absorption of visible light, they catalyse dimer splitting into the constituent monomers, a process called photoreactivation []. This is a DNA repair mechanism, repairing mismatched pyrimidine dimers induced by exposure to ultra-violet light []. The precise mechanisms involved in substrate binding, conversion of light energy to the mechanical energy needed to rupture the cyclobutane ring, and subsequent release of the product are uncertain []. Analysis of DNA lyases has revealed the presence of an intrinsic chromophore, all monomers containing a reduced FAD moiety, and, in addition, either a reduced pterin or 8-hydroxy-5-diazaflavin as a second chromophore [, ]. Either chromophore may act as the primary photon acceptor, peak absorptions occurring in the blue region of the spectrum and in the UV-B region, at a wavelength around 290nm []. This domain binds a light harvesting cofactor.; GO: 0003913 DNA photolyase activity, 0006281 DNA repair; PDB: 3UMV_A 2J07_A 1IQU_A 2J09_A 2J08_A 1IQR_A 1DNP_A 3FY4_B 2VTB_A 2J4D_B ....
Probab=81.20 E-value=17 Score=28.50 Aligned_cols=77 Identities=18% Similarity=0.248 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHhhcCCEEEEEEEeCCCC-C----Chh---hHHHHHHHHHHHHHhCCCCceeEEEEEcccCCchHHHHH
Q 028129 101 TRQAAATTAALAKKYGADITVVVIDERQK-E----SLP---EHENRLSSIRWHLSEGGFQEFRLLERLGEGSSKPTAIIG 172 (213)
Q Consensus 101 s~~Al~~A~~LA~~~~a~L~ll~V~~~~~-~----~~~---~~~~~l~~~~~~l~~~g~~~~~v~~~v~~G~~~p~~~Il 172 (213)
...||..| .+.+.++..+.+.++.. . +.. -..+.+.++...+.+.|+. .. +..|+ +.+.|.
T Consensus 13 DN~aL~~A----~~~~~~v~~vfv~d~~~~~~~~~~~~r~~Fl~~sL~~L~~~L~~~g~~---L~--v~~g~--~~~~l~ 81 (165)
T PF00875_consen 13 DNPALHAA----AQNGDPVLPVFVFDPEEFHPYRIGPRRRRFLLESLADLQESLRKLGIP---LL--VLRGD--PEEVLP 81 (165)
T ss_dssp T-HHHHHH----HHTTSEEEEEEEE-HHGGTTCSSCHHHHHHHHHHHHHHHHHHHHTTS----EE--EEESS--HHHHHH
T ss_pred hhHHHHHH----HHcCCCeEEEEEecccccccccCcchHHHHHHHHHHHHHHHHHhcCcc---eE--EEecc--hHHHHH
Confidence 44566655 44567788886655431 1 211 1224456666777888877 44 45586 999999
Q ss_pred HHHHHcCCcEEEEccc
Q 028129 173 DVADELNLDLVIISME 188 (213)
Q Consensus 173 ~~A~e~~aDLIVmG~~ 188 (213)
+++++++++.|++-..
T Consensus 82 ~l~~~~~~~~V~~~~~ 97 (165)
T PF00875_consen 82 ELAKEYGATAVYFNEE 97 (165)
T ss_dssp HHHHHHTESEEEEE--
T ss_pred HHHHhcCcCeeEeccc
Confidence 9999999999998664
No 45
>COG1184 GCD2 Translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis]
Probab=79.79 E-value=16 Score=32.28 Aligned_cols=91 Identities=19% Similarity=0.274 Sum_probs=53.3
Q ss_pred CHHHHHHHHHHHHHHhhcCCEEEEEEEeCCCCCChhhHHHHHHHHHHHHHhCCCCceeEEEEEcccCCchHHHHHHHHHH
Q 028129 98 SEGTRQAAATTAALAKKYGADITVVVIDERQKESLPEHENRLSSIRWHLSEGGFQEFRLLERLGEGSSKPTAIIGDVADE 177 (213)
Q Consensus 98 S~~s~~Al~~A~~LA~~~~a~L~ll~V~~~~~~~~~~~~~~l~~~~~~l~~~g~~~~~v~~~v~~G~~~p~~~Il~~A~e 177 (213)
|......+.. |+..+.++.+++....+. .+ -....+.+.+.|++ +...+ -.+..-+.++
T Consensus 129 S~~v~~~l~~----A~~~~k~~~V~VtESRP~-----~e--G~~~ak~L~~~gI~---~~~I~-------Dsa~~~~~~~ 187 (301)
T COG1184 129 SKTVLEVLKT----AADRGKRFKVIVTESRPR-----GE--GRIMAKELRQSGIP---VTVIV-------DSAVGAFMSR 187 (301)
T ss_pred cHHHHHHHHH----hhhcCCceEEEEEcCCCc-----ch--HHHHHHHHHHcCCc---eEEEe-------chHHHHHHHh
Confidence 6544444444 455566666666654432 11 12334567788888 54322 2345555554
Q ss_pred cCCcEEEEcccCCCCC-------CchHHH-HHhcCCCcEEEE
Q 028129 178 LNLDLVIISMEAIHSK-------HVDANL-LAEFIPCPVLLL 211 (213)
Q Consensus 178 ~~aDLIVmG~~g~~~~-------Gs~~~~-vl~~a~cPVLvV 211 (213)
+|.+++|+++--.. |..... .+++...||+++
T Consensus 188 --vd~VivGad~I~~nG~lvnkiGT~~lA~~A~e~~~Pf~v~ 227 (301)
T COG1184 188 --VDKVLVGADAILANGALVNKIGTSPLALAARELRVPFYVV 227 (301)
T ss_pred --CCEEEECccceecCCcEEeccchHHHHHHHHHhCCCEEEE
Confidence 99999999875322 333332 389999999986
No 46
>PF02844 GARS_N: Phosphoribosylglycinamide synthetase, N domain; InterPro: IPR020562 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the N-domain, which is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005481 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 3MJF_A 2XD4_A 2XCL_A 2IP4_A 2YW2_B 2YYA_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A ....
Probab=79.76 E-value=1.8 Score=32.05 Aligned_cols=23 Identities=35% Similarity=0.496 Sum_probs=20.4
Q ss_pred hHHHHHHHHHHcCCcEEEEcccC
Q 028129 167 PTAIIGDVADELNLDLVIISMEA 189 (213)
Q Consensus 167 p~~~Il~~A~e~~aDLIVmG~~g 189 (213)
-.++|+++|+++++||+|+|...
T Consensus 50 d~~~l~~~a~~~~idlvvvGPE~ 72 (100)
T PF02844_consen 50 DPEELADFAKENKIDLVVVGPEA 72 (100)
T ss_dssp -HHHHHHHHHHTTESEEEESSHH
T ss_pred CHHHHHHHHHHcCCCEEEECChH
Confidence 57899999999999999999864
No 47
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=79.33 E-value=14 Score=25.88 Aligned_cols=65 Identities=12% Similarity=0.171 Sum_probs=35.7
Q ss_pred HHHHHHHHHhCCCCceeEEEEEcccCCchHHHHHHHHHHcCCcEEEEcccCCCCCCchHHHHHhc--CCCcEEEE
Q 028129 139 LSSIRWHLSEGGFQEFRLLERLGEGSSKPTAIIGDVADELNLDLVIISMEAIHSKHVDANLLAEF--IPCPVLLL 211 (213)
Q Consensus 139 l~~~~~~l~~~g~~~~~v~~~v~~G~~~p~~~Il~~A~e~~aDLIVmG~~g~~~~Gs~~~~vl~~--a~cPVLvV 211 (213)
.+.+.+.+...|+. .+. .. . -.++.+++.+++.+|+|+|...-....|.....-+++ -.+|++++
T Consensus 11 ~~~l~~~l~~~~~~--~v~-~~--~---~~~~~~~~~~~~~~d~iiid~~~~~~~~~~~~~~i~~~~~~~~ii~~ 77 (112)
T PF00072_consen 11 RELLEKLLERAGYE--EVT-TA--S---SGEEALELLKKHPPDLIIIDLELPDGDGLELLEQIRQINPSIPIIVV 77 (112)
T ss_dssp HHHHHHHHHHTTEE--EEE-EE--S---SHHHHHHHHHHSTESEEEEESSSSSSBHHHHHHHHHHHTTTSEEEEE
T ss_pred HHHHHHHHHhCCCC--EEE-EE--C---CHHHHHHHhcccCceEEEEEeeeccccccccccccccccccccEEEe
Confidence 34444555556652 033 22 2 3456667778888999999876442234333322333 45777665
No 48
>PF13167 GTP-bdg_N: GTP-binding GTPase N-terminal
Probab=79.12 E-value=19 Score=26.34 Aligned_cols=69 Identities=20% Similarity=0.324 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHhCCCCcee----------EEEEEcccCCchHHHHHHHHHHcCCcEEEEcccCCCCCCchHHHHHhcC
Q 028129 135 HENRLSSIRWHLSEGGFQEFR----------LLERLGEGSSKPTAIIGDVADELNLDLVIISMEAIHSKHVDANLLAEFI 204 (213)
Q Consensus 135 ~~~~l~~~~~~l~~~g~~~~~----------v~~~v~~G~~~p~~~Il~~A~e~~aDLIVmG~~g~~~~Gs~~~~vl~~a 204 (213)
.+..++++..+....|++-.. ....+..| -.++|.+.++++++|+||.-.. - +++...-+-+..
T Consensus 6 ~~~~l~El~~L~~t~g~~vv~~~~q~~~~~~p~~~iG~G---K~eei~~~~~~~~~d~vvfd~~-L--sp~Q~rNLe~~~ 79 (95)
T PF13167_consen 6 FEESLEELEELAETAGYEVVGTVVQKRRKPDPKTYIGSG---KVEEIKELIEELDADLVVFDNE-L--SPSQQRNLEKAL 79 (95)
T ss_pred HHHHHHHHHHHHHHCCCeEEEEEEecCCCCCcceeechh---HHHHHHHHHhhcCCCEEEECCC-C--CHHHHHHHHHHH
Confidence 345666766666666665211 11233334 6799999999999999999764 2 444444444555
Q ss_pred CCcEE
Q 028129 205 PCPVL 209 (213)
Q Consensus 205 ~cPVL 209 (213)
.|+|+
T Consensus 80 ~~~V~ 84 (95)
T PF13167_consen 80 GVKVI 84 (95)
T ss_pred CCeee
Confidence 66664
No 49
>KOG1467 consensus Translation initiation factor 2B, delta subunit (eIF-2Bdelta/GCD2) [Translation, ribosomal structure and biogenesis]
Probab=78.66 E-value=28 Score=32.92 Aligned_cols=99 Identities=26% Similarity=0.285 Sum_probs=63.1
Q ss_pred cEEEEeeCCCCCCCHHHHHHHHHHHHHHhhcCCEEEEEEEeCCCCCChhhHHHHHHHHHHHHHhCCCCceeEEEEEcccC
Q 028129 85 HLLLPITDQNPYLSEGTRQAAATTAALAKKYGADITVVVIDERQKESLPEHENRLSSIRWHLSEGGFQEFRLLERLGEGS 164 (213)
Q Consensus 85 ~ILV~vD~~~~~~S~~s~~Al~~A~~LA~~~~a~L~ll~V~~~~~~~~~~~~~~l~~~~~~l~~~g~~~~~v~~~v~~G~ 164 (213)
.+|+-++ .|. .+...+--|++.+-++.+++||..+.. ++ ....+.+.+.|++ +.+..+.+
T Consensus 361 dviltyg-----~s~----vV~~ill~A~~~~k~frVvVVDSRP~~---EG----~~~lr~Lv~~Gin---ctYv~I~a- 420 (556)
T KOG1467|consen 361 DVLLTYG-----SSS----VVNMILLEAKELGKKFRVVVVDSRPNL---EG----RKLLRRLVDRGIN---CTYVLINA- 420 (556)
T ss_pred CEEEEec-----chH----HHHHHHHHHHHhCcceEEEEEeCCCCc---ch----HHHHHHHHHcCCC---eEEEEehh-
Confidence 5677777 454 444444446667778889989875432 12 2333457778998 77666543
Q ss_pred CchHHHHHHHHHHcCCcEEEEcccCCCCCCch--------HHHHHhcCCCcEEEE
Q 028129 165 SKPTAIIGDVADELNLDLVIISMEAIHSKHVD--------ANLLAEFIPCPVLLL 211 (213)
Q Consensus 165 ~~p~~~Il~~A~e~~aDLIVmG~~g~~~~Gs~--------~~~vl~~a~cPVLvV 211 (213)
..-|. ..++-|++|+|..-..|.. -.++++.-.+|||++
T Consensus 421 ---~syim-----~evtkvfLGahailsNG~vysR~GTa~valvAna~nVPVlVC 467 (556)
T KOG1467|consen 421 ---ASYIM-----LEVTKVFLGAHAILSNGAVYSRVGTACVALVANAFNVPVLVC 467 (556)
T ss_pred ---HHHHH-----HhcceeeechhhhhcCcchhhhcchHHHHHHhcccCCCEEEE
Confidence 33444 3478999999875333332 233488899999986
No 50
>PRK08335 translation initiation factor IF-2B subunit alpha; Validated
Probab=78.12 E-value=22 Score=31.03 Aligned_cols=83 Identities=14% Similarity=0.172 Sum_probs=46.1
Q ss_pred HHHhhcCCEEEEEEEeCCCCCChhhHHHHHHHHHHHHHhCCCCceeEEEEEcccCCchHHHHHHHHHHcCCcEEEEcccC
Q 028129 110 ALAKKYGADITVVVIDERQKESLPEHENRLSSIRWHLSEGGFQEFRLLERLGEGSSKPTAIIGDVADELNLDLVIISMEA 189 (213)
Q Consensus 110 ~LA~~~~a~L~ll~V~~~~~~~~~~~~~~l~~~~~~l~~~g~~~~~v~~~v~~G~~~p~~~Il~~A~e~~aDLIVmG~~g 189 (213)
.-|.+.|.++++++....+. .+. ..+.|.+.+.|++ +.... .+ ..-. +.++ +|.+|+|+..
T Consensus 127 ~~A~~~gk~~~V~v~EsrP~-----~qG--~~la~eL~~~GI~---vtlI~-Ds---a~~~---~m~~--vd~VivGAD~ 187 (275)
T PRK08335 127 KTAKRKGKRFKVILTESAPD-----YEG--LALANELEFLGIE---FEVIT-DA---QLGL---FAKE--ATLALVGADN 187 (275)
T ss_pred HHHHHcCCceEEEEecCCCc-----hhH--HHHHHHHHHCCCC---EEEEe-cc---HHHH---HHHh--CCEEEECccE
Confidence 33444555666664433221 111 2336678888998 55332 11 2222 2333 9999999975
Q ss_pred CCCCCc-------hH-HHHHhcCCCcEEEE
Q 028129 190 IHSKHV-------DA-NLLAEFIPCPVLLL 211 (213)
Q Consensus 190 ~~~~Gs-------~~-~~vl~~a~cPVLvV 211 (213)
-..+|. -. ..++++-.+||+++
T Consensus 188 I~~nG~v~NKiGT~~lA~~Ak~~~vPfyV~ 217 (275)
T PRK08335 188 VTRDGYVVNKAGTYLLALACHDNGVPFYVA 217 (275)
T ss_pred EecCCCEeehhhHHHHHHHHHHcCCCEEEE
Confidence 433332 22 23378899999986
No 51
>TIGR02113 coaC_strep phosphopantothenoylcysteine decarboxylase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the N-terminal region of TIGR00521, corresponding to phosphopantothenoylcysteine decarboxylase activity.
Probab=76.42 E-value=21 Score=28.88 Aligned_cols=34 Identities=41% Similarity=0.514 Sum_probs=26.8
Q ss_pred CcEEEEeeCCCCCCCHHHHHHHHHHHHHHhhcCCEEEEEE
Q 028129 84 KHLLLPITDQNPYLSEGTRQAAATTAALAKKYGADITVVV 123 (213)
Q Consensus 84 k~ILV~vD~~~~~~S~~s~~Al~~A~~LA~~~~a~L~ll~ 123 (213)
|+|++++. |+-...++.+....|-+ .|.+++++.
T Consensus 1 k~I~lgvt-----Gs~~a~~~~~ll~~L~~-~g~~V~vi~ 34 (177)
T TIGR02113 1 KKILLAVT-----GSIAAYKAADLTSQLTK-LGYDVTVLM 34 (177)
T ss_pred CEEEEEEc-----CHHHHHHHHHHHHHHHH-CCCEEEEEE
Confidence 68999999 89989888877777754 578877654
No 52
>PRK05772 translation initiation factor IF-2B subunit alpha; Provisional
Probab=76.42 E-value=19 Score=32.75 Aligned_cols=87 Identities=18% Similarity=0.214 Sum_probs=49.0
Q ss_pred HHHHhhcCCEEEEEEEeCCCCCChhhHHHHHHHHHHHHHhCCCCceeEEEEEcccCCchHHHHHHHHHHcCCcEEEEccc
Q 028129 109 AALAKKYGADITVVVIDERQKESLPEHENRLSSIRWHLSEGGFQEFRLLERLGEGSSKPTAIIGDVADELNLDLVIISME 188 (213)
Q Consensus 109 ~~LA~~~~a~L~ll~V~~~~~~~~~~~~~~l~~~~~~l~~~g~~~~~v~~~v~~G~~~p~~~Il~~A~e~~aDLIVmG~~ 188 (213)
+..|...|-+++++.....+. .+. .....|.+.+.|++ +.... ..++.-+-.+.++|.+|+|+.
T Consensus 192 i~~a~~~gk~f~V~v~EsRP~-----~qG-~rlta~eL~~~GIp---vtlI~-------Dsa~~~~m~~~~Vd~VivGAD 255 (363)
T PRK05772 192 VKLAKALGMSVSVIAPETRPW-----LQG-SRLTVYELMEEGIK---VTLIT-------DTAVGLVMYKDMVNNVMVGAD 255 (363)
T ss_pred HHHHHHCCCeEEEEECCCCcc-----chh-HHHHHHHHHHCCCC---EEEEe-------hhHHHHHHhhcCCCEEEECcc
Confidence 344555566676664433221 111 11124667888998 55322 123333334467999999997
Q ss_pred CCCCCCch-------H-HHHHhcCCCcEEEE
Q 028129 189 AIHSKHVD-------A-NLLAEFIPCPVLLL 211 (213)
Q Consensus 189 g~~~~Gs~-------~-~~vl~~a~cPVLvV 211 (213)
+-..+|.. . ..++++..+||+++
T Consensus 256 ~I~~NG~v~NKiGTy~lA~~Ak~~~vPfyV~ 286 (363)
T PRK05772 256 RILRDGHVFNKIGTFKEAVIAHELGIPFYAL 286 (363)
T ss_pred EEecCCCEeehhhhHHHHHHHHHhCCCEEEE
Confidence 65333332 2 23379999999986
No 53
>PRK05720 mtnA methylthioribose-1-phosphate isomerase; Reviewed
Probab=75.93 E-value=18 Score=32.60 Aligned_cols=59 Identities=15% Similarity=0.286 Sum_probs=37.6
Q ss_pred HHHHHhCCCCceeEEEEEcccCCchHHHHHHHHHHcCCcEEEEcccCCCCCCch-------HH-HHHhcCCCcEEEE
Q 028129 143 RWHLSEGGFQEFRLLERLGEGSSKPTAIIGDVADELNLDLVIISMEAIHSKHVD-------AN-LLAEFIPCPVLLL 211 (213)
Q Consensus 143 ~~~l~~~g~~~~~v~~~v~~G~~~p~~~Il~~A~e~~aDLIVmG~~g~~~~Gs~-------~~-~vl~~a~cPVLvV 211 (213)
.|.+.+.|++ +.... -.++.-+..+.++|.+++|+..-..+|.. .. .++++..+||+++
T Consensus 199 a~eL~~~GI~---vtlI~-------Dsa~~~~M~~~~vd~VivGAd~I~~nG~v~NkiGT~~lAl~Ak~~~vPfyV~ 265 (344)
T PRK05720 199 AWELYQAGID---VTVIT-------DNMAAHLMQTGKIDAVIVGADRIAANGDVANKIGTYQLAIAAKYHGVPFYVA 265 (344)
T ss_pred HHHHHHCCCC---EEEEc-------ccHHHHHhcccCCCEEEEcccEEecCCCEeehhhHHHHHHHHHHhCCCEEEe
Confidence 5677888988 55322 12333444456799999999764333332 22 2378999999885
No 54
>PRK08535 translation initiation factor IF-2B subunit delta; Provisional
Probab=75.19 E-value=32 Score=30.33 Aligned_cols=79 Identities=19% Similarity=0.288 Sum_probs=44.7
Q ss_pred hcCCEEEEEEEeCCCCCChhhHHHHHHHHHHHHHhCCCCceeEEEEEcccCCchHHHHHHHHHHcCCcEEEEcccCCCCC
Q 028129 114 KYGADITVVVIDERQKESLPEHENRLSSIRWHLSEGGFQEFRLLERLGEGSSKPTAIIGDVADELNLDLVIISMEAIHSK 193 (213)
Q Consensus 114 ~~~a~L~ll~V~~~~~~~~~~~~~~l~~~~~~l~~~g~~~~~v~~~v~~G~~~p~~~Il~~A~e~~aDLIVmG~~g~~~~ 193 (213)
+.|.+++++..+..+ ..+. ....+.+.+.|++ +.... -.++.-+..+ +|.+++|+..-..+
T Consensus 142 ~~~k~~~V~v~EsrP-----~~~G--~~~a~~L~~~GI~---vtlI~-------Dsav~~~m~~--vd~VivGAd~v~~n 202 (310)
T PRK08535 142 EQGKDIEVIATETRP-----RNQG--HITAKELAEYGIP---VTLIV-------DSAVRYFMKD--VDKVVVGADAITAN 202 (310)
T ss_pred HCCCeEEEEEecCCc-----hhhH--HHHHHHHHHCCCC---EEEEe-------hhHHHHHHHh--CCEEEECccEEecC
Confidence 345566665443322 1122 2345677888988 55332 1233333333 99999999764333
Q ss_pred Cc-------hHH-HHHhcCCCcEEEE
Q 028129 194 HV-------DAN-LLAEFIPCPVLLL 211 (213)
Q Consensus 194 Gs-------~~~-~vl~~a~cPVLvV 211 (213)
|. -.. .++++-..||+++
T Consensus 203 G~v~nkiGT~~~A~~Ak~~~vPv~V~ 228 (310)
T PRK08535 203 GAVINKIGTSQIALAAHEARVPFMVA 228 (310)
T ss_pred CCEEeHHhHHHHHHHHHHhCCCEEEe
Confidence 32 222 2378889999986
No 55
>PRK08334 translation initiation factor IF-2B subunit beta; Validated
Probab=74.69 E-value=26 Score=31.79 Aligned_cols=59 Identities=19% Similarity=0.238 Sum_probs=38.2
Q ss_pred HHHHHhCCCCceeEEEEEcccCCchHHHHHHHHHHcCCcEEEEcccCCCCCCch-------H-HHHHhcCCCcEEEE
Q 028129 143 RWHLSEGGFQEFRLLERLGEGSSKPTAIIGDVADELNLDLVIISMEAIHSKHVD-------A-NLLAEFIPCPVLLL 211 (213)
Q Consensus 143 ~~~l~~~g~~~~~v~~~v~~G~~~p~~~Il~~A~e~~aDLIVmG~~g~~~~Gs~-------~-~~vl~~a~cPVLvV 211 (213)
.|.+.+.|++ +.... ..++.-+-.+.++|+||+|+.+-..+|.. . ..++++-.+||+++
T Consensus 212 a~eL~~~GI~---vtlI~-------Dsav~~~M~~~~Vd~VivGAd~I~~nG~v~NKiGTy~lA~~Ak~~~vPfyV~ 278 (356)
T PRK08334 212 AWEYHYDGIP---LKLIS-------DNMAGFVMQQGKVDAIIVGADRIVANGDFANKIGTYTLAVLAKEHGIPFFTV 278 (356)
T ss_pred HHHHHHCCCC---EEEEe-------hhHHHHHhhhcCCCEEEECccEEecCCCEeehhhHHHHHHHHHHhCCCEEEE
Confidence 4677888998 55322 12333444556899999999765333332 2 23378999999986
No 56
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=74.62 E-value=21 Score=31.32 Aligned_cols=89 Identities=9% Similarity=0.058 Sum_probs=55.9
Q ss_pred CCCcEEEEeeCCCCCCCHHHHHHHHHHHHHHhhcCCEEEEEEEeCCCCCChhhHHHHHHHHHHHHHhCCCCceeEEEEEc
Q 028129 82 NFKHLLLPITDQNPYLSEGTRQAAATTAALAKKYGADITVVVIDERQKESLPEHENRLSSIRWHLSEGGFQEFRLLERLG 161 (213)
Q Consensus 82 ~~k~ILV~vD~~~~~~S~~s~~Al~~A~~LA~~~~a~L~ll~V~~~~~~~~~~~~~~l~~~~~~l~~~g~~~~~v~~~v~ 161 (213)
..++|.|-+. ++..+.+++-.+..-. ..++++.+|..+.+. +.+..++.|++.+.+.....
T Consensus 92 ~~~kiavl~S-----g~g~nl~al~~~~~~~-~l~~~i~~visn~~~-------------~~~~A~~~gIp~~~~~~~~~ 152 (289)
T PRK13010 92 QRPKVVIMVS-----KFDHCLNDLLYRWRMG-ELDMDIVGIISNHPD-------------LQPLAVQHDIPFHHLPVTPD 152 (289)
T ss_pred CCeEEEEEEe-----CCCccHHHHHHHHHCC-CCCcEEEEEEECChh-------------HHHHHHHcCCCEEEeCCCcc
Confidence 3458999998 7777888887774432 346777666555421 12445667888322111110
Q ss_pred ccCCchHHHHHHHHHHcCCcEEEEcccCC
Q 028129 162 EGSSKPTAIIGDVADELNLDLVIISMEAI 190 (213)
Q Consensus 162 ~G~~~p~~~Il~~A~e~~aDLIVmG~~g~ 190 (213)
.-. .....+++..+++++|+||+....+
T Consensus 153 ~~~-~~~~~~~~~l~~~~~Dlivlagym~ 180 (289)
T PRK13010 153 TKA-QQEAQILDLIETSGAELVVLARYMQ 180 (289)
T ss_pred ccc-chHHHHHHHHHHhCCCEEEEehhhh
Confidence 001 2356789999999999999998664
No 57
>TIGR02039 CysD sulfate adenylyltransferase, small subunit. In Escherichia coli, ATP sulfurylase is a heterodimer composed of two subunits encoded by cysD and cysN, with APS kinase encoded by cysC. These genes are located in a unidirectionally transcribed gene cluster, and have been shown to be required for the synthesis of sulfur-containing amino acids. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules.
Probab=74.56 E-value=47 Score=29.27 Aligned_cols=96 Identities=10% Similarity=0.108 Sum_probs=58.5
Q ss_pred cCCCcEEEEeeCCCCCCCHHHHHHHHHHHHHHhhcCCEEEEEEEeCCCCCChhhHHHHHHHHHHHHHhCCCCceeEEEE-
Q 028129 81 TNFKHLLLPITDQNPYLSEGTRQAAATTAALAKKYGADITVVVIDERQKESLPEHENRLSSIRWHLSEGGFQEFRLLER- 159 (213)
Q Consensus 81 ~~~k~ILV~vD~~~~~~S~~s~~Al~~A~~LA~~~~a~L~ll~V~~~~~~~~~~~~~~l~~~~~~l~~~g~~~~~v~~~- 159 (213)
..|.++++.+. |...+.-.+..+.+.....+..+.+|+++.... +++..+..+++.+ +-|++ +...
T Consensus 17 ~~f~~~vv~~S-----GGKDS~VlLhLa~kaf~~~~~p~~vl~IDTG~~--F~Et~efrd~~a~---~~gl~---l~v~~ 83 (294)
T TIGR02039 17 AEFERPVMLYS-----IGKDSSVLLHLARKAFYPGPLPFPLLHVDTGWK--FREMIAFRDHMVA---KYGLR---LIVHS 83 (294)
T ss_pred HhcCCcEEEEe-----cChHHHHHHHHHHHHhcccCCCeEEEEEecCCC--CHHHHHHHHHHHH---HhCCC---EEEEe
Confidence 44667788898 889999888888776554456788899987542 2333333333322 22433 1110
Q ss_pred ----EcccC----------C--chHHHHHHHHHHcCCcEEEEcccC
Q 028129 160 ----LGEGS----------S--KPTAIIGDVADELNLDLVIISMEA 189 (213)
Q Consensus 160 ----v~~G~----------~--~p~~~Il~~A~e~~aDLIVmG~~g 189 (213)
...|. | --.+.+.+++++++.|.++.|.|.
T Consensus 84 ~~~~~~~g~~~~~~~~~~~c~vlK~~pL~~al~e~g~da~itG~RR 129 (294)
T TIGR02039 84 NEEGIADGINPFTEGSALHTDIMKTEALRQALDKNQFDAAFGGARR 129 (294)
T ss_pred chhhhhcCccccccChHHHhhHHHHHHHHHHHHHcCCCEEEecCCh
Confidence 00111 0 012457778889999999999975
No 58
>PF01008 IF-2B: Initiation factor 2 subunit family; InterPro: IPR000649 Initiation factor 2 binds to Met-tRNA, GTP and the small ribosomal subunit. The eukaryotic translation initiation factor EIF-2B is a complex made up of five different subunits, alpha, beta, gamma, delta and epsilon, and catalyses the exchange of EIF-2-bound GDP for GTP. This family includes initiation factor 2B alpha, beta and delta subunits from eukaryotes; related proteins from archaebacteria and IF-2 from prokaryotes and also contains a subfamily of proteins in eukaryotes, archaeae (e.g. Pyrococcus furiosus), or eubacteria such as Bacillus subtilis and Thermotoga maritima. Many of these proteins were initially annotated as putative translation initiation factors despite the fact that there is no evidence for the requirement of an IF2 recycling factor in prokaryotic translation initiation. Recently, one of these proteins from B. subtilis has been functionally characterised as a 5-methylthioribose-1-phosphate isomerase (MTNA) []. This enzyme participates in the methionine salvage pathway catalysing the isomerisation of 5-methylthioribose-1-phosphate to 5-methylthioribulose-1-phosphate []. The methionine salvage pathway leads to the synthesis of methionine from methylthioadenosine, the end product of the spermidine and spermine anabolism in many species.; GO: 0044237 cellular metabolic process; PDB: 1VB5_A 1T5O_D 3A11_E 3VM6_C 1W2W_A 1T9K_A 3ECS_B 2YRF_A 2YVK_B 2A0U_A ....
Probab=74.25 E-value=15 Score=31.55 Aligned_cols=89 Identities=25% Similarity=0.300 Sum_probs=47.4
Q ss_pred HHHHHHHHhhcCCEEEEEEEeCCCCCChhhHHHHHHHHHHHHHhCCCCceeEEEEEcccCCchHHHHHHHHHHcCCcEEE
Q 028129 105 AATTAALAKKYGADITVVVIDERQKESLPEHENRLSSIRWHLSEGGFQEFRLLERLGEGSSKPTAIIGDVADELNLDLVI 184 (213)
Q Consensus 105 l~~A~~LA~~~~a~L~ll~V~~~~~~~~~~~~~~l~~~~~~l~~~g~~~~~v~~~v~~G~~~p~~~Il~~A~e~~aDLIV 184 (213)
+...+..|.+.|.++.+++++..+. . ++ ....+.+.+.|++ +.... -.++..+.++ ++|.++
T Consensus 120 v~~~l~~a~~~~~~~~V~v~es~P~-~--eG----~~~a~~L~~~gi~---v~~i~-------d~~~~~~m~~-~vd~Vl 181 (282)
T PF01008_consen 120 VERFLLSAKKKGKKFRVIVLESRPY-N--EG----RLMAKELAEAGIP---VTLIP-------DSAVGYVMPR-DVDKVL 181 (282)
T ss_dssp HHHHHHHHHHTTEEEEEEEE--TTT-T--HH----HTHHHHHHHTT-E---EEEE--------GGGHHHHHHC-TESEEE
T ss_pred HHHHHHHHHHcCCeEEEEEccCCcc-h--hh----hhHHHHhhhccee---EEEEe-------chHHHHHHHH-hCCeeE
Confidence 3333444566666777766654331 1 22 2233456677877 55332 2344444444 799999
Q ss_pred EcccCCCCC-------CchHH-HHHhcCCCcEEEE
Q 028129 185 ISMEAIHSK-------HVDAN-LLAEFIPCPVLLL 211 (213)
Q Consensus 185 mG~~g~~~~-------Gs~~~-~vl~~a~cPVLvV 211 (213)
+|+..-... |+-.. ..+++..+||+++
T Consensus 182 iGad~v~~nG~v~nk~Gt~~~a~~Ak~~~vPv~v~ 216 (282)
T PF01008_consen 182 IGADAVLANGGVVNKVGTLQLALAAKEFNVPVYVL 216 (282)
T ss_dssp EE-SEEETTS-EEEETTHHHHHHHHHHTT-EEEEE
T ss_pred EeeeEEecCCCEeehhhHHHHHHHHHhhCCCEEEE
Confidence 999653222 44433 3488999999987
No 59
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=74.24 E-value=74 Score=29.99 Aligned_cols=37 Identities=22% Similarity=0.158 Sum_probs=30.3
Q ss_pred CCCcEEEEeeCCCCCCCHHHHHHHHHHHHHHhhcCCEEEEEEE
Q 028129 82 NFKHLLLPITDQNPYLSEGTRQAAATTAALAKKYGADITVVVI 124 (213)
Q Consensus 82 ~~k~ILV~vD~~~~~~S~~s~~Al~~A~~LA~~~~a~L~ll~V 124 (213)
.-++|++++. ||-.+.+++++...|.+ .|++++++.-
T Consensus 69 ~~k~IllgVt-----GsIAayka~~lvr~L~k-~G~~V~VvmT 105 (475)
T PRK13982 69 ASKRVTLIIG-----GGIAAYKALDLIRRLKE-RGAHVRCVLT 105 (475)
T ss_pred CCCEEEEEEc-----cHHHHHHHHHHHHHHHh-CcCEEEEEEC
Confidence 3588999999 89999999999988864 5888777653
No 60
>TIGR00511 ribulose_e2b2 ribose-1,5-bisphosphate isomerase, e2b2 family. The delineation of this family was based originally, in part, on a discussion and neighbor-joining phylogenetic study by Kyrpides and Woese of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. Recently, Sato, et al. assigned the function ribulose-1,5 bisphosphate isomerase.
Probab=73.76 E-value=33 Score=30.20 Aligned_cols=79 Identities=19% Similarity=0.289 Sum_probs=44.6
Q ss_pred hcCCEEEEEEEeCCCCCChhhHHHHHHHHHHHHHhCCCCceeEEEEEcccCCchHHHHHHHHHHcCCcEEEEcccCCCCC
Q 028129 114 KYGADITVVVIDERQKESLPEHENRLSSIRWHLSEGGFQEFRLLERLGEGSSKPTAIIGDVADELNLDLVIISMEAIHSK 193 (213)
Q Consensus 114 ~~~a~L~ll~V~~~~~~~~~~~~~~l~~~~~~l~~~g~~~~~v~~~v~~G~~~p~~~Il~~A~e~~aDLIVmG~~g~~~~ 193 (213)
+.|.++.+++.+..+. .+. ....+.+.+.|++ +.... -.++.-+..+ +|.+++|+.+-...
T Consensus 137 ~~~~~f~V~v~EsrP~-----~~G--~~~a~~L~~~gI~---vtlI~-------Dsa~~~~m~~--vd~VivGad~v~~n 197 (301)
T TIGR00511 137 EQGKDIEVIATETRPR-----KQG--HITAKELRDYGIP---VTLIV-------DSAVRYFMKE--VDHVVVGADAITAN 197 (301)
T ss_pred HcCCcEEEEEecCCCc-----chH--HHHHHHHHHCCCC---EEEEe-------hhHHHHHHHh--CCEEEECccEEecC
Confidence 3455676664443221 122 2335567788988 55332 1223333333 99999999764333
Q ss_pred C-------chHH-HHHhcCCCcEEEE
Q 028129 194 H-------VDAN-LLAEFIPCPVLLL 211 (213)
Q Consensus 194 G-------s~~~-~vl~~a~cPVLvV 211 (213)
| +-.. ..+++..+||+++
T Consensus 198 G~v~nkiGT~~lA~~Ak~~~vPv~V~ 223 (301)
T TIGR00511 198 GALINKIGTSQLALAAREARVPFMVA 223 (301)
T ss_pred CCEEEHHhHHHHHHHHHHhCCCEEEE
Confidence 3 2222 2378889999986
No 61
>TIGR00512 salvage_mtnA S-methyl-5-thioribose-1-phosphate isomerase. The delineation of this family was based in part on a discussion and neighbor-joining phylogenetic study, by Kyrpides and Woese, of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. This clade is now recognized to include the methionine salvage pathway enzyme MtnA.
Probab=73.62 E-value=24 Score=31.58 Aligned_cols=59 Identities=17% Similarity=0.255 Sum_probs=36.9
Q ss_pred HHHHHhCCCCceeEEEEEcccCCchHHHHHHHHHHcCCcEEEEcccCCCCCCc-------hHH-HHHhcCCCcEEEE
Q 028129 143 RWHLSEGGFQEFRLLERLGEGSSKPTAIIGDVADELNLDLVIISMEAIHSKHV-------DAN-LLAEFIPCPVLLL 211 (213)
Q Consensus 143 ~~~l~~~g~~~~~v~~~v~~G~~~p~~~Il~~A~e~~aDLIVmG~~g~~~~Gs-------~~~-~vl~~a~cPVLvV 211 (213)
.|.+.+.|++ +.... . .++.-+.++.++|.+++|+..-..+|. -.. .++++..+||+++
T Consensus 199 a~~L~~~GI~---vtlI~--D-----sav~~~m~~~~vd~VivGAd~v~~nG~v~nkiGT~~lA~~Ak~~~vPfyV~ 265 (331)
T TIGR00512 199 AWELVQEGIP---ATLIT--D-----SMAAHLMKHGEVDAVIVGADRIAANGDTANKIGTYQLAVLAKHHGVPFYVA 265 (331)
T ss_pred HHHHHHCCCC---EEEEc--c-----cHHHHHhcccCCCEEEEcccEEecCCCEeehhhHHHHHHHHHHhCCCEEEe
Confidence 4667888988 55322 1 233333345579999999976433332 222 3378899999986
No 62
>PRK00211 sulfur relay protein TusC; Validated
Probab=73.49 E-value=9.9 Score=28.72 Aligned_cols=42 Identities=24% Similarity=0.285 Sum_probs=32.5
Q ss_pred CCcEEEEeeCCCCCCCHHHHHHHHHHHHHHhhcCCEEEEEEEeC
Q 028129 83 FKHLLLPITDQNPYLSEGTRQAAATTAALAKKYGADITVVVIDE 126 (213)
Q Consensus 83 ~k~ILV~vD~~~~~~S~~s~~Al~~A~~LA~~~~a~L~ll~V~~ 126 (213)
+++|++-+. +.||+++.+.++++.++.++.. +-++.++.+.+
T Consensus 1 M~ki~~i~~-~~Pyg~~~~~eaLd~ala~~a~-~~~v~vff~~D 42 (119)
T PRK00211 1 MKRIAFVFR-QAPHGTASGREGLDALLATSAF-TEDIGVFFIDD 42 (119)
T ss_pred CceEEEEec-CCCCCCHHHHHHHHHHHHHhcc-cCCeeEEEEhh
Confidence 356777777 4699999999999999997754 34788876654
No 63
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=73.05 E-value=50 Score=26.98 Aligned_cols=81 Identities=20% Similarity=0.172 Sum_probs=50.3
Q ss_pred CCHHHHHHHHHHHHHHhhcCCEEEEEEEeCCCCCChhhHHHHHHHHHHHHHhCCCCceeEEEEEcccCCchHHHH---HH
Q 028129 97 LSEGTRQAAATTAALAKKYGADITVVVIDERQKESLPEHENRLSSIRWHLSEGGFQEFRLLERLGEGSSKPTAII---GD 173 (213)
Q Consensus 97 ~S~~s~~Al~~A~~LA~~~~a~L~ll~V~~~~~~~~~~~~~~l~~~~~~l~~~g~~~~~v~~~v~~G~~~p~~~I---l~ 173 (213)
|+-.+..+.+.|..+..+ +.++.++..+.... .+-++++.. .+.-|++ +.. ..... ++.+.+ ++
T Consensus 11 GvGKTTt~aKLAa~~~~~-~~~v~lis~D~~R~----ga~eQL~~~---a~~l~vp---~~~-~~~~~-~~~~~~~~~l~ 77 (196)
T PF00448_consen 11 GVGKTTTIAKLAARLKLK-GKKVALISADTYRI----GAVEQLKTY---AEILGVP---FYV-ARTES-DPAEIAREALE 77 (196)
T ss_dssp TSSHHHHHHHHHHHHHHT-T--EEEEEESTSST----HHHHHHHHH---HHHHTEE---EEE-SSTTS-CHHHHHHHHHH
T ss_pred CCchHhHHHHHHHHHhhc-cccceeecCCCCCc----cHHHHHHHH---HHHhccc---cch-hhcch-hhHHHHHHHHH
Confidence 888899999999999887 88888888775432 122333333 3333555 332 22232 465544 45
Q ss_pred HHHHcCCcEEEEcccCC
Q 028129 174 VADELNLDLVIISMEAI 190 (213)
Q Consensus 174 ~A~e~~aDLIVmG~~g~ 190 (213)
..++.++|+|++=+-|+
T Consensus 78 ~~~~~~~D~vlIDT~Gr 94 (196)
T PF00448_consen 78 KFRKKGYDLVLIDTAGR 94 (196)
T ss_dssp HHHHTTSSEEEEEE-SS
T ss_pred HHhhcCCCEEEEecCCc
Confidence 56667899999999887
No 64
>PRK06371 translation initiation factor IF-2B subunit alpha; Provisional
Probab=72.99 E-value=28 Score=31.15 Aligned_cols=59 Identities=22% Similarity=0.309 Sum_probs=37.4
Q ss_pred HHHHHhCCCCceeEEEEEcccCCchHHHHHHHHHHcCCcEEEEcccCCCCCCch-------HH-HHHhcCCCcEEEE
Q 028129 143 RWHLSEGGFQEFRLLERLGEGSSKPTAIIGDVADELNLDLVIISMEAIHSKHVD-------AN-LLAEFIPCPVLLL 211 (213)
Q Consensus 143 ~~~l~~~g~~~~~v~~~v~~G~~~p~~~Il~~A~e~~aDLIVmG~~g~~~~Gs~-------~~-~vl~~a~cPVLvV 211 (213)
.|.+.+.|++ +.... . .++.-+-.+.++|.+++|+.+-..+|.. .. .++++-.+||+++
T Consensus 189 a~eL~~~GI~---vtlI~--D-----sa~~~~M~~~~Vd~VivGAd~I~aNG~v~NKiGT~~lAl~Ak~~~VPfyV~ 255 (329)
T PRK06371 189 AWELAQEGID---HAIIA--D-----NAAGYFMRKKEIDLVIVGADRIASNGDFANKIGTYEKAVLAKVNGIPFYVA 255 (329)
T ss_pred HHHHHHCCCC---EEEEc--c-----cHHHHHhhhcCCCEEEECccEEecCCCEeehhhHHHHHHHHHHcCCCEEEe
Confidence 4678888988 55322 1 2333333456799999999765333432 22 2378899999986
No 65
>TIGR00524 eIF-2B_rel eIF-2B alpha/beta/delta-related uncharacterized proteins. This model, eIF-2B_rel, describes half of a superfamily, where the other half consists of eukaryotic translation initiation factor 2B (eIF-2B) subunits alpha, beta, and delta. It is unclear whether the eIF-2B_rel set is monophyletic, or whether they are all more closely related to each other than to any eIF-2B subunit because the eIF-2B clade is highly derived. Members of this branch of the family are all uncharacterized with respect to function and are found in the Archaea, Bacteria, and Eukarya, although a number are described as putative translation intiation factor components. Proteins found by eIF-2B_rel include at least three clades, including a set of uncharacterized eukaryotic proteins, a set found in some but not all Archaea, and a set universal so far among the Archaea and closely related to several uncharacterized bacterial proteins.
Probab=72.64 E-value=21 Score=31.45 Aligned_cols=59 Identities=17% Similarity=0.317 Sum_probs=37.6
Q ss_pred HHHHHhCCCCceeEEEEEcccCCchHHHHHHHHHHcCCcEEEEcccCCCCCC-------chHH-HHHhcCCCcEEEE
Q 028129 143 RWHLSEGGFQEFRLLERLGEGSSKPTAIIGDVADELNLDLVIISMEAIHSKH-------VDAN-LLAEFIPCPVLLL 211 (213)
Q Consensus 143 ~~~l~~~g~~~~~v~~~v~~G~~~p~~~Il~~A~e~~aDLIVmG~~g~~~~G-------s~~~-~vl~~a~cPVLvV 211 (213)
.+.+.+.|++ +.. + +..++.-+-+..++|.+++|+..-...| +-.. .+++....||+++
T Consensus 171 a~~L~~~gI~---vtl-I------~Dsa~~~~m~~~~vd~VlvGAd~v~~nG~v~nk~GT~~lA~~Ak~~~vPv~V~ 237 (303)
T TIGR00524 171 AWELMQDGID---VTL-I------TDSMAAYFMQKGEIDAVIVGADRIARNGDVANKIGTYQLAVLAKEFRIPFFVA 237 (303)
T ss_pred HHHHHHCCCC---EEE-E------ChhHHHHHccccCCCEEEEcccEEecCCCEeEhhhHHHHHHHHHHhCCCEEEe
Confidence 4567778888 553 2 2234444445457999999997643333 2222 3378899999986
No 66
>PRK00509 argininosuccinate synthase; Provisional
Probab=72.22 E-value=76 Score=29.22 Aligned_cols=93 Identities=19% Similarity=0.154 Sum_probs=55.2
Q ss_pred CCcEEEEeeCCCCCCCHHHHHHHHHHHHHHhhcCCEEEEEEEeCCCCCChhhHHHHHHHHHHHHHhCCCCceeEE-----
Q 028129 83 FKHLLLPITDQNPYLSEGTRQAAATTAALAKKYGADITVVVIDERQKESLPEHENRLSSIRWHLSEGGFQEFRLL----- 157 (213)
Q Consensus 83 ~k~ILV~vD~~~~~~S~~s~~Al~~A~~LA~~~~a~L~ll~V~~~~~~~~~~~~~~l~~~~~~l~~~g~~~~~v~----- 157 (213)
.++|+|++. |.-.+.-++.++.+ .+|.+++.++++.... ..++.+++...+.|+..+.+.
T Consensus 2 ~~kVvva~S-----GGlDSsvla~~l~e---~lG~eViavt~d~Gq~-------~dle~a~~~A~~lGi~~~~viD~~~e 66 (399)
T PRK00509 2 KKKVVLAYS-----GGLDTSVIIKWLKE---TYGCEVIAFTADVGQG-------EELEPIREKALKSGASEIYVEDLREE 66 (399)
T ss_pred CCeEEEEEc-----CCHHHHHHHHHHHH---hhCCeEEEEEEecCCH-------HHHHHHHHHHHHcCCCeEEEEcCHHH
Confidence 568899988 66666666555433 2477888888876542 123333333333343211110
Q ss_pred -----------E-EEcccCC---------chHHHHHHHHHHcCCcEEEEcccCC
Q 028129 158 -----------E-RLGEGSS---------KPTAIIGDVADELNLDLVIISMEAI 190 (213)
Q Consensus 158 -----------~-~v~~G~~---------~p~~~Il~~A~e~~aDLIVmG~~g~ 190 (213)
. ...+|.. -....++++|++.++|.|.-|+.++
T Consensus 67 f~~~~i~~~i~~n~~y~g~ypl~~~lcr~~i~~~l~~~A~~~G~~~IA~G~t~k 120 (399)
T PRK00509 67 FVRDYVFPAIRANALYEGKYPLGTALARPLIAKKLVEIARKEGADAVAHGCTGK 120 (399)
T ss_pred HHHHhHHHHHHhChHhcCcCCCchHHHHHHHHHHHHHHHHHcCCCEEEeCCCcC
Confidence 0 0012321 2567899999999999999999875
No 67
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=72.18 E-value=19 Score=31.55 Aligned_cols=51 Identities=18% Similarity=0.197 Sum_probs=29.3
Q ss_pred EEcccCCchHHHHHHHHHHc-------CCcEEEEcccCCCCC---CchHHHH---HhcCCCcEEE
Q 028129 159 RLGEGSSKPTAIIGDVADEL-------NLDLVIISMEAIHSK---HVDANLL---AEFIPCPVLL 210 (213)
Q Consensus 159 ~v~~G~~~p~~~Il~~A~e~-------~aDLIVmG~~g~~~~---Gs~~~~v---l~~a~cPVLv 210 (213)
..+.|+ .....|++..+.. ++|+||++.-|.+.. ......| +..+++||+.
T Consensus 49 ~~vQG~-~A~~~I~~al~~~~~~~~~~~~Dviii~RGGGs~eDL~~FN~e~varai~~~~~Pvis 112 (319)
T PF02601_consen 49 ASVQGE-GAAASIVSALRKANEMGQADDFDVIIIIRGGGSIEDLWAFNDEEVARAIAASPIPVIS 112 (319)
T ss_pred cccccc-chHHHHHHHHHHHHhccccccccEEEEecCCCChHHhcccChHHHHHHHHhCCCCEEE
Confidence 345676 6667776544433 389999976653111 1112222 7788888864
No 68
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=71.95 E-value=28 Score=30.39 Aligned_cols=90 Identities=12% Similarity=0.088 Sum_probs=54.9
Q ss_pred cCCCcEEEEeeCCCCCCCHHHHHHHHHHHHHHhhcCCEEEEEEEeCCCCCChhhHHHHHHHHHHHHHhCCCCceeEEEEE
Q 028129 81 TNFKHLLLPITDQNPYLSEGTRQAAATTAALAKKYGADITVVVIDERQKESLPEHENRLSSIRWHLSEGGFQEFRLLERL 160 (213)
Q Consensus 81 ~~~k~ILV~vD~~~~~~S~~s~~Al~~A~~LA~~~~a~L~ll~V~~~~~~~~~~~~~~l~~~~~~l~~~g~~~~~v~~~v 160 (213)
...++|.|-.. ++..+.+++-.+..- ...++++.++..+... . ....++.|++.+.+...-
T Consensus 87 ~~~~ri~vl~S-----g~gsnl~al~~~~~~-~~~~~~i~~visn~~~------~-------~~lA~~~gIp~~~~~~~~ 147 (286)
T PRK06027 87 AERKRVVILVS-----KEDHCLGDLLWRWRS-GELPVEIAAVISNHDD------L-------RSLVERFGIPFHHVPVTK 147 (286)
T ss_pred ccCcEEEEEEc-----CCCCCHHHHHHHHHc-CCCCcEEEEEEEcChh------H-------HHHHHHhCCCEEEeccCc
Confidence 34568888888 666677777766443 2346777777555421 1 123566688822211110
Q ss_pred cccCCchHHHHHHHHHHcCCcEEEEcccCC
Q 028129 161 GEGSSKPTAIIGDVADELNLDLVIISMEAI 190 (213)
Q Consensus 161 ~~G~~~p~~~Il~~A~e~~aDLIVmG~~g~ 190 (213)
..-. +...++.+..+++++|+||+....+
T Consensus 148 ~~~~-~~~~~~~~~l~~~~~Dlivlagy~~ 176 (286)
T PRK06027 148 ETKA-EAEARLLELIDEYQPDLVVLARYMQ 176 (286)
T ss_pred cccc-hhHHHHHHHHHHhCCCEEEEecchh
Confidence 1111 2456789999999999999998765
No 69
>PRK11070 ssDNA exonuclease RecJ; Provisional
Probab=71.94 E-value=40 Score=32.50 Aligned_cols=98 Identities=10% Similarity=0.077 Sum_probs=54.3
Q ss_pred hhcCCCcEEEEeeCCCCCCCHHHHHHHHHHHHHHhhcCCEEEEEEEeCCCCCChhhHHHHHHHHHHHHHhCCCCceeEEE
Q 028129 79 AFTNFKHLLLPITDQNPYLSEGTRQAAATTAALAKKYGADITVVVIDERQKESLPEHENRLSSIRWHLSEGGFQEFRLLE 158 (213)
Q Consensus 79 ~~~~~k~ILV~vD~~~~~~S~~s~~Al~~A~~LA~~~~a~L~ll~V~~~~~~~~~~~~~~l~~~~~~l~~~g~~~~~v~~ 158 (213)
....-++|+|.-|. .-..-.+-.......+..|+.-...++.....+++. ......+.+.+.|.+ ...
T Consensus 65 ai~~~e~I~I~gDy-----D~DGitstail~~~L~~~g~~~~~~~IP~R~~eGYG----l~~~~i~~~~~~~~~---LiI 132 (575)
T PRK11070 65 ALREGTRIIVVGDF-----DADGATSTALSVLALRSLGCSNVDYLVPNRFEDGYG----LSPEVVDQAHARGAQ---LIV 132 (575)
T ss_pred HHHCCCEEEEEEec-----CccHHHHHHHHHHHHHHcCCCceEEEeCCCCcCCCC----CCHHHHHHHHhcCCC---EEE
Confidence 34456789998883 222222223334445566763222234332222211 011222233345666 666
Q ss_pred EEcccCCchHHHHHHHHHHcCCcEEEEcccCC
Q 028129 159 RLGEGSSKPTAIIGDVADELNLDLVIISMEAI 190 (213)
Q Consensus 159 ~v~~G~~~p~~~Il~~A~e~~aDLIVmG~~g~ 190 (213)
.+-.|. -..+-+++|+++++|+||.-+|..
T Consensus 133 tvD~Gi--~~~e~i~~a~~~gidvIVtDHH~~ 162 (575)
T PRK11070 133 TVDNGI--SSHAGVAHAHALGIPVLVTDHHLP 162 (575)
T ss_pred EEcCCc--CCHHHHHHHHHCCCCEEEECCCCC
Confidence 677786 566778889999999999999854
No 70
>cd01995 ExsB ExsB is a transcription regulator related protein. It is a subfamily of a Adenosine nucleotide binding superfamily of proteins. This protein family is represented by a single member in nearly every completed large ( 1000 genes) prokaryotic genome. In Rhizobium meliloti, a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA. In Arthrobacter viscosus, the homologous gene is designated ALU1 and is associated with an aluminum tolerance phenotype. The function is unknown
Probab=71.55 E-value=46 Score=25.94 Aligned_cols=86 Identities=14% Similarity=0.117 Sum_probs=49.0
Q ss_pred cEEEEeeCCCCCCCHHHHHHHHHHHHHHhhcCCEEEEEEEeCCCCCChhhHHHHHHHHHHHHHhCCCCceeEEEEEcccC
Q 028129 85 HLLLPITDQNPYLSEGTRQAAATTAALAKKYGADITVVVIDERQKESLPEHENRLSSIRWHLSEGGFQEFRLLERLGEGS 164 (213)
Q Consensus 85 ~ILV~vD~~~~~~S~~s~~Al~~A~~LA~~~~a~L~ll~V~~~~~~~~~~~~~~l~~~~~~l~~~g~~~~~v~~~v~~G~ 164 (213)
+|++.+. |..+|.-++..+.. .+-++..++++...... .+ .+.++......| . .... .+.
T Consensus 1 kvlv~~S-----GG~DS~~~~~~~~~----~~~~v~~~~~~~~~~~~-~~----~~~~~~~~~~~g-~---~~~~--~~~ 60 (169)
T cd01995 1 KAVVLLS-----GGLDSTTCLAWAKK----EGYEVHALSFDYGQRHA-KE----EEAAKLIAEKLG-P---STYV--PAR 60 (169)
T ss_pred CEEEEec-----CcHHHHHHHHHHHH----cCCcEEEEEEECCCCCh-hH----HHHHHHHHHHHC-C---CEEE--eCc
Confidence 4788888 77777776665543 35578888887543211 11 122222223334 2 1111 122
Q ss_pred Cc-hHHHHHHHHHHcCCcEEEEcccCC
Q 028129 165 SK-PTAIIGDVADELNLDLVIISMEAI 190 (213)
Q Consensus 165 ~~-p~~~Il~~A~e~~aDLIVmG~~g~ 190 (213)
.. ....+.++|+++++|.|+.|++..
T Consensus 61 ~~~~~~~l~~~a~~~g~~~i~~G~~~~ 87 (169)
T cd01995 61 NLIFLSIAAAYAEALGAEAIIIGVNAE 87 (169)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeeccC
Confidence 01 234567789999999999999863
No 71
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=71.53 E-value=28 Score=30.33 Aligned_cols=89 Identities=9% Similarity=0.065 Sum_probs=55.2
Q ss_pred CCCcEEEEeeCCCCCCCHHHHHHHHHHHHHHhhcCCEEEEEEEeCCCCCChhhHHHHHHHHHHHHHhCCCCceeEEEEEc
Q 028129 82 NFKHLLLPITDQNPYLSEGTRQAAATTAALAKKYGADITVVVIDERQKESLPEHENRLSSIRWHLSEGGFQEFRLLERLG 161 (213)
Q Consensus 82 ~~k~ILV~vD~~~~~~S~~s~~Al~~A~~LA~~~~a~L~ll~V~~~~~~~~~~~~~~l~~~~~~l~~~g~~~~~v~~~v~ 161 (213)
..++|.|-+. ++..+.+++-.+..- ...++++.++..+.+. .. ...++.|++.+.+. ...
T Consensus 83 ~~~ki~vl~S-----g~g~nl~~l~~~~~~-g~l~~~i~~visn~~~------~~-------~~A~~~gIp~~~~~-~~~ 142 (280)
T TIGR00655 83 KLKRVAILVS-----KEDHCLGDLLWRWYS-GELDAEIALVISNHED------LR-------SLVERFGIPFHYIP-ATK 142 (280)
T ss_pred CCcEEEEEEc-----CCChhHHHHHHHHHc-CCCCcEEEEEEEcChh------HH-------HHHHHhCCCEEEcC-CCC
Confidence 4568999999 777788887776443 3346777777665532 11 13556688822111 100
Q ss_pred ccCCchHHHHHHHHHHcCCcEEEEcccCC
Q 028129 162 EGSSKPTAIIGDVADELNLDLVIISMEAI 190 (213)
Q Consensus 162 ~G~~~p~~~Il~~A~e~~aDLIVmG~~g~ 190 (213)
.........+++..+++++|+||+....+
T Consensus 143 ~~~~~~e~~~~~~l~~~~~Dlivlagym~ 171 (280)
T TIGR00655 143 DNRVEHEKRQLELLKQYQVDLVVLAKYMQ 171 (280)
T ss_pred cchhhhHHHHHHHHHHhCCCEEEEeCchh
Confidence 01101346788989999999999988654
No 72
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=71.27 E-value=79 Score=28.50 Aligned_cols=91 Identities=18% Similarity=0.216 Sum_probs=62.9
Q ss_pred CCCcEEEEeeCCCCCCCHHHHHHHHHHHHHHhhcCCEEEEEEEeCCCCCChhhHHHHHHHHHHHHHhCCCCceeEEEEEc
Q 028129 82 NFKHLLLPITDQNPYLSEGTRQAAATTAALAKKYGADITVVVIDERQKESLPEHENRLSSIRWHLSEGGFQEFRLLERLG 161 (213)
Q Consensus 82 ~~k~ILV~vD~~~~~~S~~s~~Al~~A~~LA~~~~a~L~ll~V~~~~~~~~~~~~~~l~~~~~~l~~~g~~~~~v~~~v~ 161 (213)
++--.+|+++ |+-.+...-..|.++- +.|-++.+...+... -...+.++.+.+..|++ +...-
T Consensus 139 p~Vil~vGVN-----G~GKTTTIaKLA~~l~-~~g~~VllaA~DTFR-------AaAiEQL~~w~er~gv~---vI~~~- 201 (340)
T COG0552 139 PFVILFVGVN-----GVGKTTTIAKLAKYLK-QQGKSVLLAAGDTFR-------AAAIEQLEVWGERLGVP---VISGK- 201 (340)
T ss_pred cEEEEEEecC-----CCchHhHHHHHHHHHH-HCCCeEEEEecchHH-------HHHHHHHHHHHHHhCCe---EEccC-
Confidence 4556778888 8888888888887765 456666555544321 13345555566667888 66543
Q ss_pred ccCCchHHHHH---HHHHHcCCcEEEEcccCC
Q 028129 162 EGSSKPTAIIG---DVADELNLDLVIISMEAI 190 (213)
Q Consensus 162 ~G~~~p~~~Il---~~A~e~~aDLIVmG~~g~ 190 (213)
.|. ||+..+- ++|+..++|++++-+-||
T Consensus 202 ~G~-DpAaVafDAi~~Akar~~DvvliDTAGR 232 (340)
T COG0552 202 EGA-DPAAVAFDAIQAAKARGIDVVLIDTAGR 232 (340)
T ss_pred CCC-CcHHHHHHHHHHHHHcCCCEEEEeCccc
Confidence 577 8987664 578889999999999887
No 73
>PRK09860 putative alcohol dehydrogenase; Provisional
Probab=69.71 E-value=73 Score=28.82 Aligned_cols=76 Identities=17% Similarity=0.118 Sum_probs=40.1
Q ss_pred HHHHHHHHHhhcCCEEEEEEEeCCCCCChhhHHHHHHHHHHHHHhCCCCceeEEEEE-cccC--CchHHHHHHHHHHcCC
Q 028129 104 AAATTAALAKKYGADITVVVIDERQKESLPEHENRLSSIRWHLSEGGFQEFRLLERL-GEGS--SKPTAIIGDVADELNL 180 (213)
Q Consensus 104 Al~~A~~LA~~~~a~L~ll~V~~~~~~~~~~~~~~l~~~~~~l~~~g~~~~~v~~~v-~~G~--~~p~~~Il~~A~e~~a 180 (213)
+++...+..+.+|.+-.+++.+.... .....+++.+.+++.|+. +...- +..+ .+-.+++.+.+++.++
T Consensus 18 ~~~~l~~~~~~~g~~~~livt~~~~~-----~~g~~~~v~~~L~~~~i~---~~~f~~v~~np~~~~v~~~~~~~~~~~~ 89 (383)
T PRK09860 18 SLTDAMNMMADYGFTRTLIVTDNMLT-----KLGMAGDVQKALEERNIF---SVIYDGTQPNPTTENVAAGLKLLKENNC 89 (383)
T ss_pred HHHHHHHHHHhcCCCEEEEEcCcchh-----hCccHHHHHHHHHHcCCe---EEEeCCCCCCcCHHHHHHHHHHHHHcCC
Confidence 44444555566675533333333110 112345566667777776 32221 1111 0234677788899999
Q ss_pred cEEE-Ecc
Q 028129 181 DLVI-ISM 187 (213)
Q Consensus 181 DLIV-mG~ 187 (213)
|.|| +|.
T Consensus 90 D~IiaiGG 97 (383)
T PRK09860 90 DSVISLGG 97 (383)
T ss_pred CEEEEeCC
Confidence 9988 554
No 74
>cd01713 PAPS_reductase This domain is found in phosphoadenosine phosphosulphate (PAPS) reductase enzymes or PAPS sulphotransferase. PAPS reductase is part of the adenine nucleotide alpha hydrolases superfamily also including N type ATP PPases and ATP sulphurylases. A highly modified version of the P loop, the fingerprint peptide of mononucleotide-binding proteins, is present in the active site of the protein, which appears to be a positively charged cleft containing a number of conserved arginine and lysine residues. Although PAPS reductase has no ATPase activity, it shows a striking similarity to the structure of the ATP pyrophosphatase (ATP PPase) domain of GMP synthetase, indicating that both enzyme families have evolved from a common ancestral nucleotide-binding fold. The enzyme uses thioredoxin as an electron donor for the reduction of PAPS to phospho-adenosine-phosphate (PAP) . It is also found in NodP nodulation protein P from Rhizobium meliloti which has ATP sulphurylase acti
Probab=69.09 E-value=48 Score=25.11 Aligned_cols=22 Identities=14% Similarity=0.059 Sum_probs=17.4
Q ss_pred HHHHHHHHHcCCcEEEEcccCC
Q 028129 169 AIIGDVADELNLDLVIISMEAI 190 (213)
Q Consensus 169 ~~Il~~A~e~~aDLIVmG~~g~ 190 (213)
+.+-+++++.+.+.+++|.|..
T Consensus 95 ~~~~~~~~~~~~~~~~~G~r~d 116 (173)
T cd01713 95 EPLRRALKELGVVAWITGIRRD 116 (173)
T ss_pred hHHHHHHHhcCCeEEEEEeccc
Confidence 4556677778999999999864
No 75
>COG1597 LCB5 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]
Probab=69.07 E-value=43 Score=29.35 Aligned_cols=70 Identities=21% Similarity=0.165 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHhCCCCceeEEEEEcccCCchHHHHHHHHHHcCCcEEEEcccCCCCCCchHHHH--HhcCCCc-EEEE
Q 028129 135 HENRLSSIRWHLSEGGFQEFRLLERLGEGSSKPTAIIGDVADELNLDLVIISMEAIHSKHVDANLL--AEFIPCP-VLLL 211 (213)
Q Consensus 135 ~~~~l~~~~~~l~~~g~~~~~v~~~v~~G~~~p~~~Il~~A~e~~aDLIVmG~~g~~~~Gs~~~~v--l~~a~cP-VLvV 211 (213)
.+..+..+.+.+++.|.+ +..+..+.. .-+..+++.+...++|+||.+.- .|.....+ +...+-| +-++
T Consensus 18 ~~~~~~~~~~~l~~~g~~---~~~~~t~~~-g~a~~~a~~a~~~~~D~via~GG----DGTv~evingl~~~~~~~Lgil 89 (301)
T COG1597 18 AKKLLREVEELLEEAGHE---LSVRVTEEA-GDAIEIAREAAVEGYDTVIAAGG----DGTVNEVANGLAGTDDPPLGIL 89 (301)
T ss_pred hhhHHHHHHHHHHhcCCe---EEEEEeecC-ccHHHHHHHHHhcCCCEEEEecC----cchHHHHHHHHhcCCCCceEEe
Confidence 445566667777777777 555444332 35777777777778888887653 24444433 4444444 6566
Q ss_pred c
Q 028129 212 P 212 (213)
Q Consensus 212 p 212 (213)
|
T Consensus 90 P 90 (301)
T COG1597 90 P 90 (301)
T ss_pred c
Confidence 5
No 76
>cd01990 Alpha_ANH_like_I This is a subfamily of Adenine nucleotide alpha hydrolases superfamily. Adenine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins probably binds ATP. This domain is about 200 amino acids long with a strongly conserved motif SGGKD at the N terminus.
Probab=68.82 E-value=60 Score=26.12 Aligned_cols=24 Identities=29% Similarity=0.387 Sum_probs=19.4
Q ss_pred hHHHHHHHHHHcCCcEEEEcccCC
Q 028129 167 PTAIIGDVADELNLDLVIISMEAI 190 (213)
Q Consensus 167 p~~~Il~~A~e~~aDLIVmG~~g~ 190 (213)
....+.++|++++++.|+.|++..
T Consensus 83 ~~~~l~~~a~~~g~~~I~~G~~~d 106 (202)
T cd01990 83 LYEALKEIAEELGLDVVLDGTNAD 106 (202)
T ss_pred HHHHHHHHHHHCCCCEEEEcCccc
Confidence 345677899999999999998753
No 77
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=68.54 E-value=73 Score=27.00 Aligned_cols=46 Identities=17% Similarity=0.238 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHhCCCCceeEEEEEcccCCchHHHHHHHHHHcCCcEEEEccc
Q 028129 137 NRLSSIRWHLSEGGFQEFRLLERLGEGSSKPTAIIGDVADELNLDLVIISME 188 (213)
Q Consensus 137 ~~l~~~~~~l~~~g~~~~~v~~~v~~G~~~p~~~Il~~A~e~~aDLIVmG~~ 188 (213)
+.+.++++...+.+.+ +...+- |. ...+-+..+.+.++|.+|+|+.
T Consensus 164 ~KI~~lr~~~~~~~~~---~~IeVD-GG--I~~~ti~~l~~aGaD~~V~GSa 209 (228)
T PRK08091 164 DRVIQVENRLGNRRVE---KLISID-GS--MTLELASYLKQHQIDWVVSGSA 209 (228)
T ss_pred HHHHHHHHHHHhcCCC---ceEEEE-CC--CCHHHHHHHHHCCCCEEEEChh
Confidence 3444444555555655 544443 43 5555566667789999999984
No 78
>PRK10660 tilS tRNA(Ile)-lysidine synthetase; Provisional
Probab=68.21 E-value=63 Score=29.90 Aligned_cols=65 Identities=3% Similarity=0.021 Sum_probs=43.8
Q ss_pred hcCCCcEEEEeeCCCCCCCHHHHHHHHHHHHHH-hhcCCEEEEEEEeCCCCCChhhHHHHHHHHHHHHHhCCCC
Q 028129 80 FTNFKHLLLPITDQNPYLSEGTRQAAATTAALA-KKYGADITVVVIDERQKESLPEHENRLSSIRWHLSEGGFQ 152 (213)
Q Consensus 80 ~~~~k~ILV~vD~~~~~~S~~s~~Al~~A~~LA-~~~~a~L~ll~V~~~~~~~~~~~~~~l~~~~~~l~~~g~~ 152 (213)
...-++|+|++. |..+|...+.....+. ...+-+++++||+...... .++..+.++....+.|++
T Consensus 12 l~~~~~ilvavS-----GG~DS~~Ll~~l~~~~~~~~~~~l~a~hvnhglr~~---s~~~~~~~~~~~~~l~i~ 77 (436)
T PRK10660 12 LLTSRQILVAFS-----GGLDSTVLLHLLVQWRTENPGVTLRAIHVHHGLSPN---ADSWVKHCEQVCQQWQVP 77 (436)
T ss_pred cCCCCeEEEEec-----CCHHHHHHHHHHHHHHHhcCCCeEEEEEEeCCCCcc---hHHHHHHHHHHHHHcCCc
Confidence 344578999999 8888988887777665 2346789999998765432 222223444556666877
No 79
>PRK11914 diacylglycerol kinase; Reviewed
Probab=67.29 E-value=38 Score=29.33 Aligned_cols=11 Identities=0% Similarity=0.021 Sum_probs=5.8
Q ss_pred CCCcEEEEeeC
Q 028129 82 NFKHLLLPITD 92 (213)
Q Consensus 82 ~~k~ILV~vD~ 92 (213)
.++++++-+++
T Consensus 7 ~~~~~~iI~NP 17 (306)
T PRK11914 7 EIGKVTVLTNP 17 (306)
T ss_pred CCceEEEEECC
Confidence 34555555554
No 80
>TIGR03556 photolyase_8HDF deoxyribodipyrimidine photo-lyase, 8-HDF type. This model describes a narrow clade of cyanobacterial deoxyribodipyrimidine photo-lyase. This group, in contrast to several closely related proteins, uses a chromophore that, in other lineages is modified further to become coenzyme F420. This chromophore is called 8-HDF in most articles on the DNA photolyase and FO in most literature on coenzyme F420.
Probab=66.77 E-value=61 Score=30.23 Aligned_cols=80 Identities=16% Similarity=0.205 Sum_probs=51.5
Q ss_pred CHHHHHHHHHHHHHHhhcCCEEEEEEEeCCCCCC---h-----hhHHHHHHHHHHHHHhCCCCceeEEEEEcccCCchHH
Q 028129 98 SEGTRQAAATTAALAKKYGADITVVVIDERQKES---L-----PEHENRLSSIRWHLSEGGFQEFRLLERLGEGSSKPTA 169 (213)
Q Consensus 98 S~~s~~Al~~A~~LA~~~~a~L~ll~V~~~~~~~---~-----~~~~~~l~~~~~~l~~~g~~~~~v~~~v~~G~~~p~~ 169 (213)
--....||..|+. .+.+|.++.+.++.... . .-.-+.+.++.+.+.+.|+. .. +..|+ +.+
T Consensus 12 Rl~DN~AL~~A~~----~~~~vl~vfi~dp~~~~~~~~~~~r~~Fl~esL~~L~~~L~~~G~~---L~--v~~G~--p~~ 80 (471)
T TIGR03556 12 RLSDNIGLAAARQ----QSAKVVGLFCLDPNILQADDMAPARVAYLIGCLQELQQRYQQAGSQ---LL--ILQGD--PVQ 80 (471)
T ss_pred CcchHHHHHHHHh----cCCCEEEEEEEchhhhccccCCHHHHHHHHHHHHHHHHHHHHCCCC---eE--EEECC--HHH
Confidence 3445667777753 24567777665542211 0 11223455556677777877 44 44586 999
Q ss_pred HHHHHHHHcCCcEEEEccc
Q 028129 170 IIGDVADELNLDLVIISME 188 (213)
Q Consensus 170 ~Il~~A~e~~aDLIVmG~~ 188 (213)
.|.+++++++++.|+.-..
T Consensus 81 vl~~l~~~~~~~~V~~~~~ 99 (471)
T TIGR03556 81 LIPQLAQQLGAKAVYWNLD 99 (471)
T ss_pred HHHHHHHHcCCCEEEEecc
Confidence 9999999999999997654
No 81
>cd01986 Alpha_ANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases and ATP sulphurylases. The domain forms a apha/beta/apha fold which binds to Adenosine group..
Probab=65.78 E-value=46 Score=23.75 Aligned_cols=72 Identities=17% Similarity=0.172 Sum_probs=44.6
Q ss_pred EEEEeeCCCCCCCHHHHHHHHHHHHHHhhcCCEEEEEEEeCCCCCChhhHHHHHHHHHHHHHhCCCCceeEEEEEcccCC
Q 028129 86 LLLPITDQNPYLSEGTRQAAATTAALAKKYGADITVVVIDERQKESLPEHENRLSSIRWHLSEGGFQEFRLLERLGEGSS 165 (213)
Q Consensus 86 ILV~vD~~~~~~S~~s~~Al~~A~~LA~~~~a~L~ll~V~~~~~~~~~~~~~~l~~~~~~l~~~g~~~~~v~~~v~~G~~ 165 (213)
|+|++. |...|.-.+..+..+ +.++.+++++....... +...+..++ .
T Consensus 1 v~v~~S-----GG~DS~~ll~~l~~~----~~~~~~~~~~~~~~~~~-------~~~~~~~~~---------------~- 48 (103)
T cd01986 1 VLVAFS-----GGKDSSVAAALLKKL----GYQVIAVTVDHGISPRL-------EDAKEIAKE---------------A- 48 (103)
T ss_pred CEEEEe-----CcHHHHHHHHHHHHh----CCCEEEEEEcCCCcccH-------HHHHHHHHH---------------H-
Confidence 577888 777777666665443 33788888876543211 111111111 2
Q ss_pred chHHHHHHHHHHcCCcEEEEcccCC
Q 028129 166 KPTAIIGDVADELNLDLVIISMEAI 190 (213)
Q Consensus 166 ~p~~~Il~~A~e~~aDLIVmG~~g~ 190 (213)
..+.+.++|++.+++.|+.|++..
T Consensus 49 -r~~~~~~~a~~~g~~~i~~g~~~~ 72 (103)
T cd01986 49 -REEAAKRIAKEKGAETIATGTRRD 72 (103)
T ss_pred -HHHHHHHHHHHcCCCEEEEcCCcc
Confidence 567778888888889888888753
No 82
>PRK10867 signal recognition particle protein; Provisional
Probab=65.76 E-value=1.2e+02 Score=28.31 Aligned_cols=82 Identities=18% Similarity=0.177 Sum_probs=52.0
Q ss_pred CCHHHHHHHHHHHHHHhhcCCEEEEEEEeCCCCCChhhHHHHHHHHHHHHHhCCCCceeEEEEEcccCCchHH---HHHH
Q 028129 97 LSEGTRQAAATTAALAKKYGADITVVVIDERQKESLPEHENRLSSIRWHLSEGGFQEFRLLERLGEGSSKPTA---IIGD 173 (213)
Q Consensus 97 ~S~~s~~Al~~A~~LA~~~~a~L~ll~V~~~~~~~~~~~~~~l~~~~~~l~~~g~~~~~v~~~v~~G~~~p~~---~Il~ 173 (213)
|+-.+.-+...|..++++.|.++.++..+.... .. .+.++......|++ +.... .+. +|.+ ..++
T Consensus 110 GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~----aa---~eQL~~~a~~~gv~---v~~~~-~~~-dp~~i~~~a~~ 177 (433)
T PRK10867 110 GAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRP----AA---IEQLKTLGEQIGVP---VFPSG-DGQ-DPVDIAKAALE 177 (433)
T ss_pred CCcHHHHHHHHHHHHHHhcCCcEEEEEccccch----HH---HHHHHHHHhhcCCe---EEecC-CCC-CHHHHHHHHHH
Confidence 898999999999998877677787777665321 11 12222233445666 33211 222 3543 3345
Q ss_pred HHHHcCCcEEEEcccCC
Q 028129 174 VADELNLDLVIISMEAI 190 (213)
Q Consensus 174 ~A~e~~aDLIVmG~~g~ 190 (213)
+++..++|+||+-+.|+
T Consensus 178 ~a~~~~~DvVIIDTaGr 194 (433)
T PRK10867 178 EAKENGYDVVIVDTAGR 194 (433)
T ss_pred HHHhcCCCEEEEeCCCC
Confidence 66777899999999887
No 83
>PRK06036 translation initiation factor IF-2B subunit alpha; Provisional
Probab=65.39 E-value=67 Score=28.91 Aligned_cols=59 Identities=19% Similarity=0.260 Sum_probs=38.1
Q ss_pred HHHHHhCCCCceeEEEEEcccCCchHHHHHHHHHHcCCcEEEEcccCCCCCC------chH-HHHHhcCCCcEEEE
Q 028129 143 RWHLSEGGFQEFRLLERLGEGSSKPTAIIGDVADELNLDLVIISMEAIHSKH------VDA-NLLAEFIPCPVLLL 211 (213)
Q Consensus 143 ~~~l~~~g~~~~~v~~~v~~G~~~p~~~Il~~A~e~~aDLIVmG~~g~~~~G------s~~-~~vl~~a~cPVLvV 211 (213)
.|.+.+.|++ +.... -.++.-+-++.++|.+|+|+.+-..+| .-. ..++++-.+||+++
T Consensus 200 a~eL~~~GI~---vtlI~-------Dsa~~~~M~~~~Vd~VivGAd~I~anGv~NKiGT~~lA~~Ak~~~vPfyV~ 265 (339)
T PRK06036 200 TWELMQDNIP---VTLIT-------DSMAGIVMRQGMVDKVIVGADRITRDAVFNKIGTYTHSVLAKEHEIPFYVA 265 (339)
T ss_pred HHHHHHcCCC---EEEEe-------hhHHHHHhccCCCCEEEECccchhhcCeehhhhHHHHHHHHHHhCCCEEEE
Confidence 4677788988 55322 134444555567999999997653334 222 22378899999885
No 84
>cd08176 LPO Lactadehyde:propanediol oxidoreductase (LPO) catalyzes the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. Lactadehyde:propanediol oxidoreductase (LPO) is a member of the group III iron-activated dehydrogenases which catalyze the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. L-Fucose and L-rhamnose is used by Escherichia coli through an inducible pathway mediated by the fucose regulon comprising four linked oeprons fucO, fucA, fucPIK, and fucR. The fucA-encoded aldolase catalyzes the formation of dihydroxyacetone phosphate and L-lactaldehyde. Under anaerobic conditions, with NADH as a cofactor, lactaldehyde is converted by a fucO-encoded Lactadehyde:propanediol oxidoreductase (LPO) to L-1,2-propanediol, which is excreted as a fermentation product. In mutant strains, E. coli adapted to grow on L-1,2-propanediol, FucO catalyzes the oxidation of the polyol to
Probab=64.62 E-value=68 Score=28.85 Aligned_cols=46 Identities=15% Similarity=0.024 Sum_probs=26.5
Q ss_pred HHHHHHHHHhCCCCceeEEEEE-cccC--CchHHHHHHHHHHcCCcEEE-Ecc
Q 028129 139 LSSIRWHLSEGGFQEFRLLERL-GEGS--SKPTAIIGDVADELNLDLVI-ISM 187 (213)
Q Consensus 139 l~~~~~~l~~~g~~~~~v~~~v-~~G~--~~p~~~Il~~A~e~~aDLIV-mG~ 187 (213)
.+++...+...|++ +.... ..++ .+..+.+.+.+++.++|+|| +|.
T Consensus 45 ~~~v~~~L~~~~~~---~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGG 94 (377)
T cd08176 45 VEKVTDVLDEAGID---YVIYDGVKPNPTITNVKDGLAVFKKEGCDFIISIGG 94 (377)
T ss_pred HHHHHHHHHHcCCe---EEEeCCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 45555666666766 43221 1222 02245677778888999888 554
No 85
>PRK15454 ethanol dehydrogenase EutG; Provisional
Probab=64.28 E-value=44 Score=30.44 Aligned_cols=85 Identities=15% Similarity=0.035 Sum_probs=46.6
Q ss_pred cCCCcEEEEeeCCCCCCCHHHHHHHHHHHHHHhhcCCEEEEEEEeCCCCCChhhHHHHHHHHHHHHHhCCCCceeEEEE-
Q 028129 81 TNFKHLLLPITDQNPYLSEGTRQAAATTAALAKKYGADITVVVIDERQKESLPEHENRLSSIRWHLSEGGFQEFRLLER- 159 (213)
Q Consensus 81 ~~~k~ILV~vD~~~~~~S~~s~~Al~~A~~LA~~~~a~L~ll~V~~~~~~~~~~~~~~l~~~~~~l~~~g~~~~~v~~~- 159 (213)
....+|++..+ +++....+.+++|.+-.+++.+..-. ....++++...+++.|++ +...
T Consensus 25 ~~P~~i~fG~g------------~~~~l~~~~~~~g~~~~lvv~~~~~~-----~~g~~~~v~~~L~~~gi~---~~~~~ 84 (395)
T PRK15454 25 SVPPVTLCGPG------------AVSSCGQQAQTRGLKHLFVMADSFLH-----QAGMTAGLTRSLAVKGIA---MTLWP 84 (395)
T ss_pred ecCCeEEECcC------------HHHHHHHHHHhcCCCEEEEEcCcchh-----hCccHHHHHHHHHHcCCe---EEEEC
Confidence 34456666655 33444455556676544444443211 112345566667777876 4432
Q ss_pred EcccC--CchHHHHHHHHHHcCCcEEEE
Q 028129 160 LGEGS--SKPTAIIGDVADELNLDLVII 185 (213)
Q Consensus 160 v~~G~--~~p~~~Il~~A~e~~aDLIVm 185 (213)
...++ .+..++..+.+++.++|.||-
T Consensus 85 ~v~~~P~~~~v~~~~~~~r~~~~D~Iia 112 (395)
T PRK15454 85 CPVGEPCITDVCAAVAQLRESGCDGVIA 112 (395)
T ss_pred CCCCCcCHHHHHHHHHHHHhcCcCEEEE
Confidence 12332 012456777889999998875
No 86
>COG1606 ATP-utilizing enzymes of the PP-loop superfamily [General function prediction only]
Probab=64.09 E-value=98 Score=26.91 Aligned_cols=94 Identities=13% Similarity=0.146 Sum_probs=54.7
Q ss_pred hhcCCCcEEEEeeCCCCCCCHHHHHHHHHHHHHHhhcCCEEEEEEEeCCCCCChhhHHHHHHHHHHHHHhCCCCceeEE-
Q 028129 79 AFTNFKHLLLPITDQNPYLSEGTRQAAATTAALAKKYGADITVVVIDERQKESLPEHENRLSSIRWHLSEGGFQEFRLL- 157 (213)
Q Consensus 79 ~~~~~k~ILV~vD~~~~~~S~~s~~Al~~A~~LA~~~~a~L~ll~V~~~~~~~~~~~~~~l~~~~~~l~~~g~~~~~v~- 157 (213)
.+...++++|++. |.-.|.-.+..|.+. .|.++..+.++.+.... ..++.+.....+.|++. .+.
T Consensus 13 ~ik~~~kv~vAfS-----GGvDSslLa~la~~~---lG~~v~AvTv~sP~~p~-----~e~e~A~~~A~~iGi~H-~~i~ 78 (269)
T COG1606 13 AIKEKKKVVVAFS-----GGVDSSLLAKLAKEA---LGDNVVAVTVDSPYIPR-----REIEEAKNIAKEIGIRH-EFIK 78 (269)
T ss_pred HHhhcCeEEEEec-----CCccHHHHHHHHHHH---hccceEEEEEecCCCCh-----hhhhHHHHHHHHhCCcc-eeee
Confidence 3455669999999 666565454444333 35567677666543211 22333343444444441 010
Q ss_pred ---------------EEEcccCCchHHHHHHHHHHcCCcEEEEccc
Q 028129 158 ---------------ERLGEGSSKPTAIIGDVADELNLDLVIISME 188 (213)
Q Consensus 158 ---------------~~v~~G~~~p~~~Il~~A~e~~aDLIVmG~~ 188 (213)
+.+-.- ...+.|.+.|.+.++|.|+=|+.
T Consensus 79 ~~~~~~~~~~n~~~rCY~CK~--~v~~~l~~~a~~~Gyd~V~dGtN 122 (269)
T COG1606 79 MNRMDPEFKENPENRCYLCKR--AVYSTLVEEAEKRGYDVVADGTN 122 (269)
T ss_pred hhhcchhhccCCCCcchHHHH--HHHHHHHHHHHHcCCCEEEeCCc
Confidence 111111 46789999999999999999994
No 87
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=64.03 E-value=88 Score=26.31 Aligned_cols=45 Identities=16% Similarity=0.105 Sum_probs=27.2
Q ss_pred HHHHHHHHHHhCCCCceeEEEEEcccCCchHHHHHHHHHHcCCcEEEEccc
Q 028129 138 RLSSIRWHLSEGGFQEFRLLERLGEGSSKPTAIIGDVADELNLDLVIISME 188 (213)
Q Consensus 138 ~l~~~~~~l~~~g~~~~~v~~~v~~G~~~p~~~Il~~A~e~~aDLIVmG~~ 188 (213)
.+.++++...+.+.+ +...+-.| ...+-+....+.++|.+|+|+.
T Consensus 157 KI~~l~~~~~~~~~~---~~IeVDGG---I~~eti~~l~~aGaDi~V~GSa 201 (223)
T PRK08745 157 KLRAIRKKIDALGKP---IRLEIDGG---VKADNIGAIAAAGADTFVAGSA 201 (223)
T ss_pred HHHHHHHHHHhcCCC---eeEEEECC---CCHHHHHHHHHcCCCEEEEChh
Confidence 344444444454544 54445444 4555555666779999999984
No 88
>PRK12563 sulfate adenylyltransferase subunit 2; Provisional
Probab=63.87 E-value=92 Score=27.72 Aligned_cols=96 Identities=11% Similarity=0.063 Sum_probs=57.3
Q ss_pred CCCcEEEEeeCCCCCCCHHHHHHHHHHHHHHhhcCCEEEEEEEeCCCCCChhhHHHHHHHHHHHHHhCCCCceeEEEEE-
Q 028129 82 NFKHLLLPITDQNPYLSEGTRQAAATTAALAKKYGADITVVVIDERQKESLPEHENRLSSIRWHLSEGGFQEFRLLERL- 160 (213)
Q Consensus 82 ~~k~ILV~vD~~~~~~S~~s~~Al~~A~~LA~~~~a~L~ll~V~~~~~~~~~~~~~~l~~~~~~l~~~g~~~~~v~~~v- 160 (213)
.|.++++.+. |...+.-.+..+.+.....+..+-+|+|+.... +++.-+..+.+.+. -|++ +....
T Consensus 36 ~f~~~~v~~S-----gGKDS~VlLhLa~kaf~~~~~~~pvl~VDTG~~--FpEt~efrD~~a~~---~gl~---Liv~~~ 102 (312)
T PRK12563 36 ECSKPVMLYS-----IGKDSVVMLHLAMKAFRPTRPPFPLLHVDTTWK--FREMIDFRDRRAKE---LGLD---LVVHHN 102 (312)
T ss_pred hcCCcEEEec-----CChHHHHHHHHHHHhhcccCCCeeEEEeCCCCC--CHHHHHHHHHHHHH---hCCc---EEEecC
Confidence 4677888999 888999888888776544455788889887532 22222333333222 2333 11100
Q ss_pred -----------cccC---C--chHHHHHHHHHHcCCcEEEEcccCC
Q 028129 161 -----------GEGS---S--KPTAIIGDVADELNLDLVIISMEAI 190 (213)
Q Consensus 161 -----------~~G~---~--~p~~~Il~~A~e~~aDLIVmG~~g~ 190 (213)
..|. + --.+.+.++.+++++|.++.|.|..
T Consensus 103 ~~~~~~G~~~~~~~~~~~c~~~Kv~pL~raL~~~g~da~itG~RRd 148 (312)
T PRK12563 103 PDGIARGIVPFRHGSALHTDVAKTQGLKQALDHHGFDAAIGGARRD 148 (312)
T ss_pred hHHHHhCCCcccCCHHHHhhHHhHHHHHHHHHhcCCCEEEEecCHH
Confidence 0010 0 1235677778889999999999753
No 89
>TIGR02765 crypto_DASH cryptochrome, DASH family. Photolyases and cryptochromes are related flavoproteins. Photolyases harness the energy of blue light to repair DNA damage by removing pyrimidine dimers. Cryptochromes do not repair DNA and are presumed to act instead in some other (possibly unknown) process such as entraining circadian rhythms. This model describes the cryptochrome DASH subfamily, one of at least five major subfamilies, which is found in plants, animals, marine bacteria, etc. Members of this family bind both folate and FAD. They may show weak photolyase activity in vitro but have not been shown to affect DNA repair in vivo. Rather, DASH family cryptochromes have been shown to bind RNA (Vibrio cholerae VC1814), or DNA, and seem likely to act in light-responsive regulatory processes.
Probab=63.15 E-value=91 Score=28.47 Aligned_cols=80 Identities=18% Similarity=0.228 Sum_probs=51.6
Q ss_pred CHHHHHHHHHHHHHHhhcCCEEEEEEEeCCCCCC---------h-h----hHHHHHHHHHHHHHhCCCCceeEEEEEccc
Q 028129 98 SEGTRQAAATTAALAKKYGADITVVVIDERQKES---------L-P----EHENRLSSIRWHLSEGGFQEFRLLERLGEG 163 (213)
Q Consensus 98 S~~s~~Al~~A~~LA~~~~a~L~ll~V~~~~~~~---------~-~----~~~~~l~~~~~~l~~~g~~~~~v~~~v~~G 163 (213)
--....||..|+.. +.+|..|.+.++.... . + -..+.++++.+.+.+.|+. .. +..|
T Consensus 12 Rl~DN~aL~~A~~~----~~~vl~vfi~dp~~~~~~~~~~~~~~~~~r~~Fl~esL~~L~~~L~~~g~~---L~--v~~G 82 (429)
T TIGR02765 12 RVHDNPALYKASSS----SDTLIPLYCFDPRQFKLTHFFGFPKTGPARGKFLLESLKDLRTSLRKLGSD---LL--VRSG 82 (429)
T ss_pred ccccHHHHHHHHhc----CCeEEEEEEECchHhccccccccCCCCHHHHHHHHHHHHHHHHHHHHcCCC---eE--EEeC
Confidence 34455677777543 3357777665542111 1 1 1223456666677777877 44 3458
Q ss_pred CCchHHHHHHHHHHcCCcEEEEccc
Q 028129 164 SSKPTAIIGDVADELNLDLVIISME 188 (213)
Q Consensus 164 ~~~p~~~Il~~A~e~~aDLIVmG~~ 188 (213)
+ +.+.|.+.+++++++.|+.-..
T Consensus 83 ~--~~~vl~~L~~~~~~~~V~~~~~ 105 (429)
T TIGR02765 83 K--PEDVLPELIKELGVRTVFLHQE 105 (429)
T ss_pred C--HHHHHHHHHHHhCCCEEEEecc
Confidence 6 9999999999999999999764
No 90
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=62.77 E-value=1.2e+02 Score=28.27 Aligned_cols=107 Identities=18% Similarity=0.146 Sum_probs=68.7
Q ss_pred CcEEEEeeCCCCCCCHHHHHHHHHHHHHHhhcCCEEEEEEEeCCCCCChhhHHHHHHHHHHHHHhCCCCceeEEEEEccc
Q 028129 84 KHLLLPITDQNPYLSEGTRQAAATTAALAKKYGADITVVVIDERQKESLPEHENRLSSIRWHLSEGGFQEFRLLERLGEG 163 (213)
Q Consensus 84 k~ILV~vD~~~~~~S~~s~~Al~~A~~LA~~~~a~L~ll~V~~~~~~~~~~~~~~l~~~~~~l~~~g~~~~~v~~~v~~G 163 (213)
.-|||.=|+ |--.+.-.++.+.++|++. .+|+|.-.. ..+.++.+...-|+....+. ...+
T Consensus 94 s~iLIgGdP----GIGKSTLLLQva~~lA~~~----~vLYVsGEE---------S~~QiklRA~RL~~~~~~l~-l~aE- 154 (456)
T COG1066 94 SVILIGGDP----GIGKSTLLLQVAARLAKRG----KVLYVSGEE---------SLQQIKLRADRLGLPTNNLY-LLAE- 154 (456)
T ss_pred cEEEEccCC----CCCHHHHHHHHHHHHHhcC----cEEEEeCCc---------CHHHHHHHHHHhCCCccceE-Eehh-
Confidence 358888887 7778889999999999764 566665322 13344444555565422222 2222
Q ss_pred CCchHHHHHHHHHHcCCcEEEEcccCC-------CCCCchHHH---------HHhcCCCcEEEE
Q 028129 164 SSKPTAIIGDVADELNLDLVIISMEAI-------HSKHVDANL---------LAEFIPCPVLLL 211 (213)
Q Consensus 164 ~~~p~~~Il~~A~e~~aDLIVmG~~g~-------~~~Gs~~~~---------vl~~a~cPVLvV 211 (213)
.-.+.|++.+++.+.|++|+-+-.. +..|+.+.. ++++..+++++|
T Consensus 155 --t~~e~I~~~l~~~~p~lvVIDSIQT~~s~~~~SapGsVsQVRe~t~~L~~~AK~~~i~~fiV 216 (456)
T COG1066 155 --TNLEDIIAELEQEKPDLVVIDSIQTLYSEEITSAPGSVSQVREVAAELMRLAKTKNIAIFIV 216 (456)
T ss_pred --cCHHHHHHHHHhcCCCEEEEeccceeecccccCCCCcHHHHHHHHHHHHHHHHHcCCeEEEE
Confidence 2468999999999999999977221 012655432 378888888776
No 91
>PRK10481 hypothetical protein; Provisional
Probab=62.71 E-value=95 Score=26.25 Aligned_cols=43 Identities=19% Similarity=0.324 Sum_probs=31.6
Q ss_pred hHHHHHHHHH---HcCCcEEEEcccCCCCCCchHHHHHhcCCCcEEEE
Q 028129 167 PTAIIGDVAD---ELNLDLVIISMEAIHSKHVDANLLAEFIPCPVLLL 211 (213)
Q Consensus 167 p~~~Il~~A~---e~~aDLIVmG~~g~~~~Gs~~~~vl~~a~cPVLvV 211 (213)
..+.+.+.++ +.++|+|||+.-|. +..-...+-+...+||+..
T Consensus 167 ~~~~l~~aa~~L~~~gaD~Ivl~C~G~--~~~~~~~le~~lg~PVI~~ 212 (224)
T PRK10481 167 SEEELIDAGKELLDQGADVIVLDCLGY--HQRHRDLLQKALDVPVLLS 212 (224)
T ss_pred CHHHHHHHHHHhhcCCCCEEEEeCCCc--CHHHHHHHHHHHCcCEEcH
Confidence 3457777777 56899999999886 3233556788889999753
No 92
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=62.52 E-value=47 Score=25.61 Aligned_cols=40 Identities=28% Similarity=0.381 Sum_probs=29.2
Q ss_pred HHHHhCCCCceeEEEEEcccCCchHHHHHHHHHHcCCcEEEEcccC
Q 028129 144 WHLSEGGFQEFRLLERLGEGSSKPTAIIGDVADELNLDLVIISMEA 189 (213)
Q Consensus 144 ~~l~~~g~~~~~v~~~v~~G~~~p~~~Il~~A~e~~aDLIVmG~~g 189 (213)
..+...|++ +.. + |..-|.+.|++.|.++++|+|.+....
T Consensus 25 ~~lr~~G~e---Vi~-L--G~~vp~e~i~~~a~~~~~d~V~lS~~~ 64 (137)
T PRK02261 25 RALTEAGFE---VIN-L--GVMTSQEEFIDAAIETDADAILVSSLY 64 (137)
T ss_pred HHHHHCCCE---EEE-C--CCCCCHHHHHHHHHHcCCCEEEEcCcc
Confidence 456677887 542 3 322488999999999999999998754
No 93
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=62.36 E-value=1.1e+02 Score=27.98 Aligned_cols=36 Identities=28% Similarity=0.299 Sum_probs=28.9
Q ss_pred CCCcEEEEeeCCCCCCCHHHHHHHHHHHHHHhhcCCEEEEEE
Q 028129 82 NFKHLLLPITDQNPYLSEGTRQAAATTAALAKKYGADITVVV 123 (213)
Q Consensus 82 ~~k~ILV~vD~~~~~~S~~s~~Al~~A~~LA~~~~a~L~ll~ 123 (213)
..++|++++. ||-...+++++...|- +.|+++.++.
T Consensus 5 ~~k~IllgvT-----Gsiaa~k~~~lv~~L~-~~g~~V~vv~ 40 (399)
T PRK05579 5 AGKRIVLGVS-----GGIAAYKALELVRRLR-KAGADVRVVM 40 (399)
T ss_pred CCCeEEEEEe-----CHHHHHHHHHHHHHHH-hCCCEEEEEE
Confidence 4578999999 8998889988888775 4688877654
No 94
>COG0420 SbcD DNA repair exonuclease [DNA replication, recombination, and repair]
Probab=61.85 E-value=18 Score=32.61 Aligned_cols=47 Identities=19% Similarity=0.207 Sum_probs=29.6
Q ss_pred chHHHHHHHHHHcCCcEEEEcccCCC--CCCchHH-------HHHhcCCCcEEEEc
Q 028129 166 KPTAIIGDVADELNLDLVIISMEAIH--SKHVDAN-------LLAEFIPCPVLLLP 212 (213)
Q Consensus 166 ~p~~~Il~~A~e~~aDLIVmG~~g~~--~~Gs~~~-------~vl~~a~cPVLvVp 212 (213)
+....+++.|.+.++|+||++.-=-+ .-...+. .-+..+.|||+++.
T Consensus 27 ~~f~~~l~~a~~~~vD~vliAGDlFd~~~Ps~~a~~~~~~~l~~l~~~~Ipv~~I~ 82 (390)
T COG0420 27 KAFDELLEIAKEEKVDFVLIAGDLFDTNNPSPRALKLFLEALRRLKDAGIPVVVIA 82 (390)
T ss_pred HHHHHHHHHHHHccCCEEEEccccccCCCCCHHHHHHHHHHHHHhccCCCcEEEec
Confidence 46678888899999999999872110 0111111 11666778988874
No 95
>PLN02331 phosphoribosylglycinamide formyltransferase
Probab=61.64 E-value=93 Score=25.83 Aligned_cols=86 Identities=15% Similarity=0.111 Sum_probs=48.7
Q ss_pred cEEEEeeCCCCCCCHHHHHHHHHHHHHHhhcCCEEEEEEEeCCCCCChhhHHHHHHHHHHHHHhCCCCceeEEEEEc-cc
Q 028129 85 HLLLPITDQNPYLSEGTRQAAATTAALAKKYGADITVVVIDERQKESLPEHENRLSSIRWHLSEGGFQEFRLLERLG-EG 163 (213)
Q Consensus 85 ~ILV~vD~~~~~~S~~s~~Al~~A~~LA~~~~a~L~ll~V~~~~~~~~~~~~~~l~~~~~~l~~~g~~~~~v~~~v~-~G 163 (213)
+|.|-+. ++..+.+++-.+.+-- ..++++.++..+.... ...+..++.|+. +...-. ..
T Consensus 1 ki~vl~S-----g~Gsn~~al~~~~~~~-~l~~~i~~visn~~~~-----------~~~~~A~~~gIp---~~~~~~~~~ 60 (207)
T PLN02331 1 KLAVFVS-----GGGSNFRAIHDACLDG-RVNGDVVVVVTNKPGC-----------GGAEYARENGIP---VLVYPKTKG 60 (207)
T ss_pred CEEEEEe-----CCChhHHHHHHHHHcC-CCCeEEEEEEEeCCCC-----------hHHHHHHHhCCC---EEEeccccC
Confidence 3556666 5666777766664322 2356666555554321 113345666888 332111 00
Q ss_pred --CCchHHHHHHHHHHcCCcEEEEcccCC
Q 028129 164 --SSKPTAIIGDVADELNLDLVIISMEAI 190 (213)
Q Consensus 164 --~~~p~~~Il~~A~e~~aDLIVmG~~g~ 190 (213)
...-.+++++..+++++|+||+...++
T Consensus 61 ~~~~~~~~~~~~~l~~~~~Dliv~agy~~ 89 (207)
T PLN02331 61 EPDGLSPDELVDALRGAGVDFVLLAGYLK 89 (207)
T ss_pred CCcccchHHHHHHHHhcCCCEEEEeCcch
Confidence 000146788889999999999977554
No 96
>cd01712 ThiI ThiI is required for thiazole synthesis in the thiamine biosynthesis pathway. It belongs to the Adenosine Nucleotide Hydrolysis suoerfamily and predicted to bind to Adenosine nucleotide.
Probab=60.82 E-value=81 Score=24.83 Aligned_cols=94 Identities=14% Similarity=0.115 Sum_probs=50.8
Q ss_pred cEEEEeeCCCCCCCHHHHHHHHHHHHHHhhcCCEEEEEEEeCCCCCChhhHHHHHHHHHHHHHhCCCCceeEEEEEc---
Q 028129 85 HLLLPITDQNPYLSEGTRQAAATTAALAKKYGADITVVVIDERQKESLPEHENRLSSIRWHLSEGGFQEFRLLERLG--- 161 (213)
Q Consensus 85 ~ILV~vD~~~~~~S~~s~~Al~~A~~LA~~~~a~L~ll~V~~~~~~~~~~~~~~l~~~~~~l~~~g~~~~~v~~~v~--- 161 (213)
+|++++. |...|.-++..+.+ .|.+++.++++...... .+......++.+.+.+.+.. +.+.....
T Consensus 1 ~vlv~~S-----GG~DS~~la~ll~~----~g~~v~av~~d~g~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~ 69 (177)
T cd01712 1 KALALLS-----GGIDSPVAAWLLMK----RGIEVDALHFNSGPFTS-EKAREKVEDLARKLARYSPG-HKLVVIIFTFF 69 (177)
T ss_pred CEEEEec-----CChhHHHHHHHHHH----cCCeEEEEEEeCCCCCc-hHHHHHHHHHHHHHHHhCCC-CceEEEeCcHH
Confidence 4788888 77777766655544 47788888888765322 11112222333333333322 11111000
Q ss_pred -------ccC---------CchHHHHHHHHHHcCCcEEEEcccC
Q 028129 162 -------EGS---------SKPTAIIGDVADELNLDLVIISMEA 189 (213)
Q Consensus 162 -------~G~---------~~p~~~Il~~A~e~~aDLIVmG~~g 189 (213)
.+. .-....+.++|+++++|.|+.|.+.
T Consensus 70 ~~~~~~~~~~~~~~c~~Cr~~~~~~~~~~A~~~g~~~I~~G~~~ 113 (177)
T cd01712 70 VQKEIYGYGKEKYRCILCKRMMYRIAEKLAEELGADAIVTGESL 113 (177)
T ss_pred HHHHHHHhCCCccHhHHHHHHHHHHHHHHHHHcCCCEEEEccCc
Confidence 010 0112346678999999999999975
No 97
>PRK14057 epimerase; Provisional
Probab=60.14 E-value=1.1e+02 Score=26.32 Aligned_cols=46 Identities=15% Similarity=0.040 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHhCCCCceeEEEEEcccCCchHHHHHHHHHHcCCcEEEEccc
Q 028129 137 NRLSSIRWHLSEGGFQEFRLLERLGEGSSKPTAIIGDVADELNLDLVIISME 188 (213)
Q Consensus 137 ~~l~~~~~~l~~~g~~~~~v~~~v~~G~~~p~~~Il~~A~e~~aDLIVmG~~ 188 (213)
+.+.++++...+.+.. +...+- |. ....-+..+.+.++|.+|+|+.
T Consensus 178 ~KI~~lr~~~~~~~~~---~~IeVD-GG--I~~~ti~~l~~aGad~~V~GSa 223 (254)
T PRK14057 178 ERVAQLLCLLGDKREG---KIIVID-GS--LTQDQLPSLIAQGIDRVVSGSA 223 (254)
T ss_pred HHHHHHHHHHHhcCCC---ceEEEE-CC--CCHHHHHHHHHCCCCEEEEChH
Confidence 3344444555555655 554443 43 5555555666789999999984
No 98
>PRK06029 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Provisional
Probab=59.07 E-value=23 Score=28.93 Aligned_cols=37 Identities=16% Similarity=0.183 Sum_probs=30.8
Q ss_pred CCcEEEEeeCCCCCCCHHHHHHHHHHHHHHhhcCCEEEEEEE
Q 028129 83 FKHLLLPITDQNPYLSEGTRQAAATTAALAKKYGADITVVVI 124 (213)
Q Consensus 83 ~k~ILV~vD~~~~~~S~~s~~Al~~A~~LA~~~~a~L~ll~V 124 (213)
+++|++++. ||-.+.++.+....|.+..|++++++.-
T Consensus 1 ~k~IllgVT-----Gsiaa~ka~~l~~~L~k~~g~~V~vv~T 37 (185)
T PRK06029 1 MKRLIVGIS-----GASGAIYGVRLLQVLRDVGEIETHLVIS 37 (185)
T ss_pred CCEEEEEEE-----CHHHHHHHHHHHHHHHhhcCCeEEEEEC
Confidence 579999999 8999999999999987656788777643
No 99
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=58.53 E-value=22 Score=27.36 Aligned_cols=39 Identities=28% Similarity=0.437 Sum_probs=29.5
Q ss_pred HHHHhCCCCceeEEEEEcccCCchHHHHHHHHHHcCCcEEEEccc
Q 028129 144 WHLSEGGFQEFRLLERLGEGSSKPTAIIGDVADELNLDLVIISME 188 (213)
Q Consensus 144 ~~l~~~g~~~~~v~~~v~~G~~~p~~~Il~~A~e~~aDLIVmG~~ 188 (213)
..++..|++ +.. + |.+-+.+++++.|.++++|+|.|.+-
T Consensus 21 ~~L~~~Gfe---Vid-L--G~~v~~e~~v~aa~~~~adiVglS~L 59 (128)
T cd02072 21 HAFTEAGFN---VVN-L--GVLSPQEEFIDAAIETDADAILVSSL 59 (128)
T ss_pred HHHHHCCCE---EEE-C--CCCCCHHHHHHHHHHcCCCEEEEecc
Confidence 356778888 553 2 32248899999999999999999774
No 100
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=58.49 E-value=1.2e+02 Score=25.95 Aligned_cols=44 Identities=20% Similarity=0.265 Sum_probs=29.1
Q ss_pred hHHHHHHHHHHcCCcEEEEcccCCCCCCchHHH------HHhcCCCcEEEE
Q 028129 167 PTAIIGDVADELNLDLVIISMEAIHSKHVDANL------LAEFIPCPVLLL 211 (213)
Q Consensus 167 p~~~Il~~A~e~~aDLIVmG~~g~~~~Gs~~~~------vl~~a~cPVLvV 211 (213)
-..++.+.|++.++|-|++...... ....... ++..+++||++-
T Consensus 83 ~~~~~a~~a~~~G~d~v~~~~P~~~-~~~~~~l~~~~~~ia~~~~~pi~lY 132 (284)
T cd00950 83 EAIELTKRAEKAGADAALVVTPYYN-KPSQEGLYAHFKAIAEATDLPVILY 132 (284)
T ss_pred HHHHHHHHHHHcCCCEEEEcccccC-CCCHHHHHHHHHHHHhcCCCCEEEE
Confidence 3455668899999999988875431 1122222 367788999875
No 101
>cd08189 Fe-ADH5 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=58.36 E-value=93 Score=27.92 Aligned_cols=46 Identities=11% Similarity=-0.026 Sum_probs=26.0
Q ss_pred HHHHHHHHHhCCCCceeEEEE-EcccC--CchHHHHHHHHHHcCCcEEE-Ecc
Q 028129 139 LSSIRWHLSEGGFQEFRLLER-LGEGS--SKPTAIIGDVADELNLDLVI-ISM 187 (213)
Q Consensus 139 l~~~~~~l~~~g~~~~~v~~~-v~~G~--~~p~~~Il~~A~e~~aDLIV-mG~ 187 (213)
++++...+.+.|++ +... -.+++ .+..+.+.+.+++.++|.|| +|.
T Consensus 43 ~~~v~~~L~~~g~~---~~~~~~v~~~p~~~~v~~~~~~~~~~~~d~IIaiGG 92 (374)
T cd08189 43 LDKVLEALEGAGIE---YAVYDGVPPDPTIENVEAGLALYRENGCDAILAVGG 92 (374)
T ss_pred HHHHHHHHHhcCCe---EEEeCCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 44555566666765 3322 12222 01245677788888999887 443
No 102
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=58.32 E-value=65 Score=31.03 Aligned_cols=71 Identities=14% Similarity=0.148 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHhCCCCceeEEEEEcccCC--chHHHHHHHHHHcCCcEEEEcccCCCCCCchHHHHHhcCCCcEEEEcC
Q 028129 137 NRLSSIRWHLSEGGFQEFRLLERLGEGSS--KPTAIIGDVADELNLDLVIISMEAIHSKHVDANLLAEFIPCPVLLLPL 213 (213)
Q Consensus 137 ~~l~~~~~~l~~~g~~~~~v~~~v~~G~~--~p~~~Il~~A~e~~aDLIVmG~~g~~~~Gs~~~~vl~~a~cPVLvVp~ 213 (213)
..++++...+.+.|++ ++..+..-.- +-...+++.+++.+++.||.++-.. +--.-.++..+.+||+-||.
T Consensus 424 ~~~~~~~~~l~~~g~~---~~~~v~sahr~~~~~~~~~~~~~~~~~~v~i~~ag~~---~~l~~~~a~~t~~pvi~vp~ 496 (577)
T PLN02948 424 PTMKDAAEILDSFGVP---YEVTIVSAHRTPERMFSYARSAHSRGLQVIIAGAGGA---AHLPGMVASMTPLPVIGVPV 496 (577)
T ss_pred HHHHHHHHHHHHcCCC---eEEEEECCccCHHHHHHHHHHHHHCCCCEEEEEcCcc---ccchHHHhhccCCCEEEcCC
Confidence 4466667778888888 4444432220 1234455566778899888877543 44445568888999988874
No 103
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=58.16 E-value=25 Score=32.37 Aligned_cols=47 Identities=21% Similarity=0.235 Sum_probs=32.5
Q ss_pred EEcccCCchHHHHHHHHHHcC---CcEEEEcccCCCCCCchHHH-------H---HhcCCCcEEE
Q 028129 159 RLGEGSSKPTAIIGDVADELN---LDLVIISMEAIHSKHVDANL-------L---AEFIPCPVLL 210 (213)
Q Consensus 159 ~v~~G~~~p~~~Il~~A~e~~---aDLIVmG~~g~~~~Gs~~~~-------v---l~~a~cPVLv 210 (213)
..+.|+ .....|++..+..+ +|+||+|.-| |+...+ | +.++++||+.
T Consensus 170 ~~vQG~-~A~~~i~~al~~~~~~~~Dviii~RGG----GS~eDL~~Fn~e~v~~ai~~~~~Pvis 229 (438)
T PRK00286 170 TLVQGE-GAAASIVAAIERANARGEDVLIVARGG----GSLEDLWAFNDEAVARAIAASRIPVIS 229 (438)
T ss_pred CcCcCc-cHHHHHHHHHHHhcCCCCCEEEEecCC----CCHHHhhccCcHHHHHHHHcCCCCEEE
Confidence 456788 78888887655444 5999998765 333332 2 7889999874
No 104
>TIGR00342 thiazole biosynthesis/tRNA modification protein ThiI. The protein product of the thiI gene is required for the synthesis of the thiazole moiety in thiamine biosynthesis. It also acts in the generation of 4-thiouridine in tRNA, and may occur in species (such as Mycoplasma genitalium) that lack de novo thiamine biosynthesis.
Probab=58.08 E-value=1.4e+02 Score=26.86 Aligned_cols=97 Identities=12% Similarity=0.019 Sum_probs=50.1
Q ss_pred CCcEEEEeeCCCCCCCHHHHHHHHHHHHHHhhcCCEEEEEEEeCCCCCChhhHHHHHHHHHHHHHhCCC--CceeEE---
Q 028129 83 FKHLLLPITDQNPYLSEGTRQAAATTAALAKKYGADITVVVIDERQKESLPEHENRLSSIRWHLSEGGF--QEFRLL--- 157 (213)
Q Consensus 83 ~k~ILV~vD~~~~~~S~~s~~Al~~A~~LA~~~~a~L~ll~V~~~~~~~~~~~~~~l~~~~~~l~~~g~--~~~~v~--- 157 (213)
-.++|+.+. |.-+|.-++..+ .+.|.++..++++...... ++..+....+.+.+...+. .-+.+.
T Consensus 172 ~~kvlvllS-----GGiDS~vaa~ll----~krG~~V~av~~~~~~~~~-~~~~~~v~~l~~~l~~~~~~~~l~~v~~~~ 241 (371)
T TIGR00342 172 QGKVLALLS-----GGIDSPVAAFMM----MKRGCRVVAVHFFNEPAAS-EKAREKVERLANSLNETGGSVKLYVFDFTD 241 (371)
T ss_pred CCeEEEEec-----CCchHHHHHHHH----HHcCCeEEEEEEeCCCCcc-HHHHHHHHHHHHHHhhcCCCceEEEEeCHH
Confidence 458899998 666676555444 3348899999888543322 1112222222222221121 100000
Q ss_pred ------------EEEcccCCchHHHHHHHHHHcCCcEEEEcccC
Q 028129 158 ------------ERLGEGSSKPTAIIGDVADELNLDLVIISMEA 189 (213)
Q Consensus 158 ------------~~v~~G~~~p~~~Il~~A~e~~aDLIVmG~~g 189 (213)
........-......++|+++++|.|+.|.+.
T Consensus 242 ~~~~i~~~~~~~~~cv~cRr~m~~~a~~~A~~~g~~~I~tG~~l 285 (371)
T TIGR00342 242 VQEEIIHIIPEGYTCVLCRRMMYKAASKVAEKEGCLAIVTGESL 285 (371)
T ss_pred HHHHHHhcCCCCceeHhHHHHHHHHHHHHHHHcCCCEEEEccCh
Confidence 00000000122344678999999999999975
No 105
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=57.72 E-value=56 Score=28.55 Aligned_cols=89 Identities=13% Similarity=0.081 Sum_probs=53.2
Q ss_pred CCCcEEEEeeCCCCCCCHHHHHHHHHHHHHHhhcCCEEEEEEEeCCCCCChhhHHHHHHHHHHHHHhCCCCceeEEEEEc
Q 028129 82 NFKHLLLPITDQNPYLSEGTRQAAATTAALAKKYGADITVVVIDERQKESLPEHENRLSSIRWHLSEGGFQEFRLLERLG 161 (213)
Q Consensus 82 ~~k~ILV~vD~~~~~~S~~s~~Al~~A~~LA~~~~a~L~ll~V~~~~~~~~~~~~~~l~~~~~~l~~~g~~~~~v~~~v~ 161 (213)
...+|.|-.. ++..+.+++-.+..-- ..++++.++..+.+. +....++.|++-+.+....
T Consensus 88 ~~~ri~vl~S-----g~g~nl~al~~~~~~~-~~~~~i~~visn~~~-------------~~~lA~~~gIp~~~~~~~~- 147 (286)
T PRK13011 88 ARPKVLIMVS-----KFDHCLNDLLYRWRIG-ELPMDIVGVVSNHPD-------------LEPLAAWHGIPFHHFPITP- 147 (286)
T ss_pred cCceEEEEEc-----CCcccHHHHHHHHHcC-CCCcEEEEEEECCcc-------------HHHHHHHhCCCEEEeCCCc-
Confidence 3458888888 6766777777664432 246777766555421 1222566688822111001
Q ss_pred ccCCchHHHHHHHHHHcCCcEEEEcccCC
Q 028129 162 EGSSKPTAIIGDVADELNLDLVIISMEAI 190 (213)
Q Consensus 162 ~G~~~p~~~Il~~A~e~~aDLIVmG~~g~ 190 (213)
....+....+.+..+++++|+||+....+
T Consensus 148 ~~~~~~~~~~~~~l~~~~~Dlivlagy~~ 176 (286)
T PRK13011 148 DTKPQQEAQVLDVVEESGAELVVLARYMQ 176 (286)
T ss_pred CchhhhHHHHHHHHHHhCcCEEEEeChhh
Confidence 11102345788889999999999988654
No 106
>PRK14665 mnmA tRNA-specific 2-thiouridylase MnmA; Provisional
Probab=57.43 E-value=1.5e+02 Score=26.82 Aligned_cols=97 Identities=15% Similarity=0.106 Sum_probs=54.7
Q ss_pred CCCcEEEEeeCCCCCCCHHHHHHHHHHHHHHhhcCCEEEEEEEeCCCCCChhhHHHHHHHHHHHHHhCCCCceeEEE---
Q 028129 82 NFKHLLLPITDQNPYLSEGTRQAAATTAALAKKYGADITVVVIDERQKESLPEHENRLSSIRWHLSEGGFQEFRLLE--- 158 (213)
Q Consensus 82 ~~k~ILV~vD~~~~~~S~~s~~Al~~A~~LA~~~~a~L~ll~V~~~~~~~~~~~~~~l~~~~~~l~~~g~~~~~v~~--- 158 (213)
+-++|+|++. |.-.|.-++..+ ++.|.+++.+++....... ..+..+.+++..+..|++-+-+..
T Consensus 4 ~~~kVlValS-----GGVDSsvaa~LL----~~~G~~V~~v~~~~~~~~~---~~~d~~~a~~va~~LgIp~~vvd~~~~ 71 (360)
T PRK14665 4 KNKRVLLGMS-----GGTDSSVAAMLL----LEAGYEVTGVTFRFYEFNG---STEYLEDARALAERLGIGHITYDARKV 71 (360)
T ss_pred CCCEEEEEEc-----CCHHHHHHHHHH----HHcCCeEEEEEEecCCCCC---ChHHHHHHHHHHHHhCCCEEEEecHHH
Confidence 3468999999 777776555444 3457788888776533211 112233444444555654111110
Q ss_pred -----------EEcccCC-c--------h-HHHHHHHHHHcCCcEEEEcccCC
Q 028129 159 -----------RLGEGSS-K--------P-TAIIGDVADELNLDLVIISMEAI 190 (213)
Q Consensus 159 -----------~v~~G~~-~--------p-~~~Il~~A~e~~aDLIVmG~~g~ 190 (213)
....|.+ . . ...+.++|+++++|.|+.|++.+
T Consensus 72 f~~~v~~~f~~~y~~g~tpnpC~~Cnr~ikf~~l~~~A~~~G~~~IATGHya~ 124 (360)
T PRK14665 72 FRKQIIDYFIDEYMSGHTPVPCTLCNNYLKWPLLAKIADEMGIFYLATGHYVR 124 (360)
T ss_pred HHHHHHhhhhhHHhccCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEECCccc
Confidence 0001220 0 1 24567899999999999999764
No 107
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=57.05 E-value=46 Score=24.82 Aligned_cols=40 Identities=18% Similarity=0.219 Sum_probs=29.6
Q ss_pred HHHHhCCCCceeEEEEEcccCCchHHHHHHHHHHcCCcEEEEcccC
Q 028129 144 WHLSEGGFQEFRLLERLGEGSSKPTAIIGDVADELNLDLVIISMEA 189 (213)
Q Consensus 144 ~~l~~~g~~~~~v~~~v~~G~~~p~~~Il~~A~e~~aDLIVmG~~g 189 (213)
..+...|++ +.. + ... .|.+.+++.+++.++|.|++....
T Consensus 21 ~~l~~~G~~---vi~-l-G~~-vp~e~~~~~a~~~~~d~V~iS~~~ 60 (122)
T cd02071 21 RALRDAGFE---VIY-T-GLR-QTPEEIVEAAIQEDVDVIGLSSLS 60 (122)
T ss_pred HHHHHCCCE---EEE-C-CCC-CCHHHHHHHHHHcCCCEEEEcccc
Confidence 456777887 542 2 223 588899999999999999997754
No 108
>TIGR02638 lactal_redase lactaldehyde reductase. This clade of genes encoding iron-containing alcohol dehydrogenase (pfam00465) proteins is generally found in apparent operons for the catabolism of rhamnose or fucose. Catabolism of both of these monosaccharides results in lactaldehyde which is reduced by this enzyme to 1,2 propanediol. This protein is alternatively known by the name 1,2 propanediol oxidoreductase. This enzyme is active under anaerobic conditions in E. coli while being inactivated by reactive oxygen species under aerobic conditions. Under aerobic conditions the lactaldehyde product of rhamnose and fucose catabolism is believed to be oxidized to lactate by a separate enzyme, lactaldehyde dehydrogenase.
Probab=56.93 E-value=82 Score=28.36 Aligned_cols=46 Identities=13% Similarity=-0.072 Sum_probs=26.0
Q ss_pred HHHHHHHHHhCCCCceeEEEEE-cccC--CchHHHHHHHHHHcCCcEEE-Ecc
Q 028129 139 LSSIRWHLSEGGFQEFRLLERL-GEGS--SKPTAIIGDVADELNLDLVI-ISM 187 (213)
Q Consensus 139 l~~~~~~l~~~g~~~~~v~~~v-~~G~--~~p~~~Il~~A~e~~aDLIV-mG~ 187 (213)
.+++...+++.|++ +...- ...+ .+..+.+.+.+++.++|.|| +|.
T Consensus 46 ~~~v~~~L~~~~i~---~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IiaiGG 95 (379)
T TIGR02638 46 ADKVTDLLDEAGIA---YELFDEVKPNPTITVVKAGVAAFKASGADYLIAIGG 95 (379)
T ss_pred hHHHHHHHHHCCCe---EEEECCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 45555566666766 43221 1122 01234577778888999988 444
No 109
>PF07302 AroM: AroM protein; InterPro: IPR010843 This family consists of several bacterial and archaeal AroM proteins. In Escherichia coli the aroM gene is cotranscribed with aroL []. The function of this family is unknown.
Probab=56.84 E-value=84 Score=26.57 Aligned_cols=43 Identities=19% Similarity=0.262 Sum_probs=32.5
Q ss_pred HHHHHHHHHH---cCCcEEEEcccCCCCCCchHHHHHhcCCCcEEEEc
Q 028129 168 TAIIGDVADE---LNLDLVIISMEAIHSKHVDANLLAEFIPCPVLLLP 212 (213)
Q Consensus 168 ~~~Il~~A~e---~~aDLIVmG~~g~~~~Gs~~~~vl~~a~cPVLvVp 212 (213)
.+++.+.|++ .++|+|||-.-|. +--.+..+.+.+.+||++-+
T Consensus 164 ~~~l~~Aa~~L~~~gadlIvLDCmGY--t~~~r~~~~~~~g~PVlLsr 209 (221)
T PF07302_consen 164 EEELAAAARELAEQGADLIVLDCMGY--TQEMRDIVQRALGKPVLLSR 209 (221)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCCC--CHHHHHHHHHHhCCCEEeHH
Confidence 4566666654 4899999988887 55566777889999999743
No 110
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=56.67 E-value=1.2e+02 Score=25.67 Aligned_cols=118 Identities=19% Similarity=0.222 Sum_probs=56.8
Q ss_pred EEEEeeCCCCCCCHHHHHHHHHHHHHHhhcCCEEEEE--EEeCCCCCChhhHHHHHHHHHHHHHhCCCCceeEEEEEccc
Q 028129 86 LLLPITDQNPYLSEGTRQAAATTAALAKKYGADITVV--VIDERQKESLPEHENRLSSIRWHLSEGGFQEFRLLERLGEG 163 (213)
Q Consensus 86 ILV~vD~~~~~~S~~s~~Al~~A~~LA~~~~a~L~ll--~V~~~~~~~~~~~~~~l~~~~~~l~~~g~~~~~v~~~v~~G 163 (213)
++.|+|.+ + +-..++++.-++.....|.+-.++ +..+....+.++..+.++.+.+.. ...+. +...+...
T Consensus 5 ~~TPf~~d---g-~iD~~~~~~~i~~l~~~Gv~gi~~~GstGE~~~ls~~Er~~l~~~~~~~~-~~~~~---vi~gv~~~ 76 (281)
T cd00408 5 LVTPFTAD---G-EVDLDALRRLVEFLIEAGVDGLVVLGTTGEAPTLTDEERKEVIEAVVEAV-AGRVP---VIAGVGAN 76 (281)
T ss_pred eeCCcCCC---C-CcCHHHHHHHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHh-CCCCe---EEEecCCc
Confidence 34555531 2 334445555445444445544333 223322222233333344443332 12233 44433222
Q ss_pred CCchHHHHHHHHHHcCCcEEEEcccCCCCC---CchHHH--HHhcCCCcEEEE
Q 028129 164 SSKPTAIIGDVADELNLDLVIISMEAIHSK---HVDANL--LAEFIPCPVLLL 211 (213)
Q Consensus 164 ~~~p~~~Il~~A~e~~aDLIVmG~~g~~~~---Gs~~~~--vl~~a~cPVLvV 211 (213)
.+.-..++.+.|++.++|-|++........ +....+ ++...+.|+++-
T Consensus 77 ~~~~~i~~a~~a~~~Gad~v~v~pP~y~~~~~~~~~~~~~~ia~~~~~pi~iY 129 (281)
T cd00408 77 STREAIELARHAEEAGADGVLVVPPYYNKPSQEGIVAHFKAVADASDLPVILY 129 (281)
T ss_pred cHHHHHHHHHHHHHcCCCEEEECCCcCCCCCHHHHHHHHHHHHhcCCCCEEEE
Confidence 212345566789999999999987543111 222221 367788999874
No 111
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=56.61 E-value=61 Score=23.89 Aligned_cols=64 Identities=14% Similarity=0.053 Sum_probs=37.6
Q ss_pred HHHHHHHHHhCCCCceeEEEEEcccCCchHHHHHHHHHHcCCcEEEEcccCCCCCCch-HHHHHhcCCCcEEEEc
Q 028129 139 LSSIRWHLSEGGFQEFRLLERLGEGSSKPTAIIGDVADELNLDLVIISMEAIHSKHVD-ANLLAEFIPCPVLLLP 212 (213)
Q Consensus 139 l~~~~~~l~~~g~~~~~v~~~v~~G~~~p~~~Il~~A~e~~aDLIVmG~~g~~~~Gs~-~~~vl~~a~cPVLvVp 212 (213)
.+.+++.+++.|++ ++..- . ...++-++....++|+|++|.+=+ .-.. -..++..-.+||.+++
T Consensus 18 a~k~k~~~~e~gi~---~~i~a--~---~~~e~~~~~~~~~~DvIll~PQi~--~~~~~i~~~~~~~~ipv~~I~ 82 (104)
T PRK09590 18 AKKTTEYLKEQGKD---IEVDA--I---TATEGEKAIAAAEYDLYLVSPQTK--MYFKQFEEAGAKVGKPVVQIP 82 (104)
T ss_pred HHHHHHHHHHCCCc---eEEEE--e---cHHHHHHhhccCCCCEEEEChHHH--HHHHHHHHHhhhcCCCEEEeC
Confidence 34455667777887 54322 2 344566666666799999997643 1111 1123455678888875
No 112
>COG0745 OmpR Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]
Probab=56.54 E-value=1.1e+02 Score=25.60 Aligned_cols=63 Identities=16% Similarity=0.118 Sum_probs=39.9
Q ss_pred HHHHHHHHHhCCCCceeEEEEEcccCCchHHHHHHHHHHcCCcEEEEcccCCCCCCchHHHHHh---cCCCcEEEE
Q 028129 139 LSSIRWHLSEGGFQEFRLLERLGEGSSKPTAIIGDVADELNLDLVIISMEAIHSKHVDANLLAE---FIPCPVLLL 211 (213)
Q Consensus 139 l~~~~~~l~~~g~~~~~v~~~v~~G~~~p~~~Il~~A~e~~aDLIVmG~~g~~~~Gs~~~~vl~---~a~cPVLvV 211 (213)
.+.+...+...|+. +.... -.++-++.++.. +|+||+-..-....|..-..-++ ....||+++
T Consensus 13 ~~~l~~~L~~~g~~---v~~~~------~~~~a~~~~~~~-~dlviLD~~lP~~dG~~~~~~iR~~~~~~~PIi~L 78 (229)
T COG0745 13 AELLKEYLEEEGYE---VDVAA------DGEEALEAAREQ-PDLVLLDLMLPDLDGLELCRRLRAKKGSGPPIIVL 78 (229)
T ss_pred HHHHHHHHHHCCCE---EEEEC------CHHHHHHHHhcC-CCEEEEECCCCCCCHHHHHHHHHhhcCCCCcEEEE
Confidence 44455667788887 65332 235666667767 99999977544235666555555 255668875
No 113
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=55.75 E-value=1.4e+02 Score=25.86 Aligned_cols=100 Identities=12% Similarity=0.076 Sum_probs=60.9
Q ss_pred CHHHHHHHHHHHHHHhhcCCEEEEEEEeCCCC--CChh-hHHHHHHHHHHHHHhCCCCceeEEEEEcccCCchHHHHHHH
Q 028129 98 SEGTRQAAATTAALAKKYGADITVVVIDERQK--ESLP-EHENRLSSIRWHLSEGGFQEFRLLERLGEGSSKPTAIIGDV 174 (213)
Q Consensus 98 S~~s~~Al~~A~~LA~~~~a~L~ll~V~~~~~--~~~~-~~~~~l~~~~~~l~~~g~~~~~v~~~v~~G~~~p~~~Il~~ 174 (213)
-+..+.++++|..|.. .+.++.....+++.. .++. -.++.+..+++...+.|+. +...+.. ..=+++
T Consensus 37 ie~~~~~~~~A~~lk~-~g~~~~r~~~~kpRTs~~s~~G~g~~gl~~l~~~~~~~Gl~---~~te~~d------~~~~~~ 106 (266)
T PRK13398 37 VESEEQMVKVAEKLKE-LGVHMLRGGAFKPRTSPYSFQGLGEEGLKILKEVGDKYNLP---VVTEVMD------TRDVEE 106 (266)
T ss_pred CCCHHHHHHHHHHHHH-cCCCEEEEeeecCCCCCCccCCcHHHHHHHHHHHHHHcCCC---EEEeeCC------hhhHHH
Confidence 4456778888888876 566655556655321 1221 1345566666677888988 6655532 233455
Q ss_pred HHHcCCcEEEEcccCCCCCCchHHHHHhcCCCcEEE
Q 028129 175 ADELNLDLVIISMEAIHSKHVDANLLAEFIPCPVLL 210 (213)
Q Consensus 175 A~e~~aDLIVmG~~g~~~~Gs~~~~vl~~a~cPVLv 210 (213)
+.+. +|++-+|++.- .-..-..-+.+...||++
T Consensus 107 l~~~-vd~~kIga~~~--~n~~LL~~~a~~gkPV~l 139 (266)
T PRK13398 107 VADY-ADMLQIGSRNM--QNFELLKEVGKTKKPILL 139 (266)
T ss_pred HHHh-CCEEEECcccc--cCHHHHHHHhcCCCcEEE
Confidence 5566 89999999865 222222225677888876
No 114
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=55.69 E-value=1.7e+02 Score=27.08 Aligned_cols=82 Identities=22% Similarity=0.265 Sum_probs=51.7
Q ss_pred CCHHHHHHHHHHHHHHhhcCCEEEEEEEeCCCCCChhhHHHHHHHHHHHHHhCCCCceeEEEEEcccCCchHH---HHHH
Q 028129 97 LSEGTRQAAATTAALAKKYGADITVVVIDERQKESLPEHENRLSSIRWHLSEGGFQEFRLLERLGEGSSKPTA---IIGD 173 (213)
Q Consensus 97 ~S~~s~~Al~~A~~LA~~~~a~L~ll~V~~~~~~~~~~~~~~l~~~~~~l~~~g~~~~~v~~~v~~G~~~p~~---~Il~ 173 (213)
|+-.+.-+...|..+..+.|.++.++..+.... .. .+.+.......|++ +.. ...+. +|.+ ..++
T Consensus 109 GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~----~a---~~QL~~~a~~~gvp---~~~-~~~~~-~P~~i~~~al~ 176 (428)
T TIGR00959 109 GSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRP----AA---IEQLKVLGQQVGVP---VFA-LGKGQ-SPVEIARRALE 176 (428)
T ss_pred CCcHHHHHHHHHHHHHHhCCCeEEEEeccccch----HH---HHHHHHHHHhcCCc---eEe-cCCCC-CHHHHHHHHHH
Confidence 888999999999998755677887777765321 11 12222233445666 332 12233 4643 3455
Q ss_pred HHHHcCCcEEEEcccCC
Q 028129 174 VADELNLDLVIISMEAI 190 (213)
Q Consensus 174 ~A~e~~aDLIVmG~~g~ 190 (213)
.+...++|+||+-+.|+
T Consensus 177 ~~~~~~~DvVIIDTaGr 193 (428)
T TIGR00959 177 YAKENGFDVVIVDTAGR 193 (428)
T ss_pred HHHhcCCCEEEEeCCCc
Confidence 66678899999999887
No 115
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=55.43 E-value=32 Score=26.66 Aligned_cols=41 Identities=22% Similarity=0.328 Sum_probs=30.2
Q ss_pred HHHHHhCCCCceeEEEEEcccCCchHHHHHHHHHHcCCcEEEEcccC
Q 028129 143 RWHLSEGGFQEFRLLERLGEGSSKPTAIIGDVADELNLDLVIISMEA 189 (213)
Q Consensus 143 ~~~l~~~g~~~~~v~~~v~~G~~~p~~~Il~~A~e~~aDLIVmG~~g 189 (213)
...++..|++ +.. + |.+-+.+++++.|.++++|+|.|.+.-
T Consensus 22 ~~~l~~~Gfe---Vi~-L--G~~v~~e~~v~aa~~~~adiVglS~l~ 62 (134)
T TIGR01501 22 DHAFTNAGFN---VVN-L--GVLSPQEEFIKAAIETKADAILVSSLY 62 (134)
T ss_pred HHHHHHCCCE---EEE-C--CCCCCHHHHHHHHHHcCCCEEEEeccc
Confidence 3456778888 553 2 322478999999999999999998753
No 116
>PRK10624 L-1,2-propanediol oxidoreductase; Provisional
Probab=54.44 E-value=1.1e+02 Score=27.63 Aligned_cols=76 Identities=14% Similarity=0.046 Sum_probs=38.2
Q ss_pred HHHHHHHHHhhcCCEEEEEEEeCCCCCChhhHHHHHHHHHHHHHhCCCCceeEEEEE-cccC--CchHHHHHHHHHHcCC
Q 028129 104 AAATTAALAKKYGADITVVVIDERQKESLPEHENRLSSIRWHLSEGGFQEFRLLERL-GEGS--SKPTAIIGDVADELNL 180 (213)
Q Consensus 104 Al~~A~~LA~~~~a~L~ll~V~~~~~~~~~~~~~~l~~~~~~l~~~g~~~~~v~~~v-~~G~--~~p~~~Il~~A~e~~a 180 (213)
+++......+..+.+-.+++.+.... .....+++...+++.|++ +...- ...+ .+..+.+++.+++.++
T Consensus 17 ~l~~l~~~~~~~g~~~~lvvtd~~~~-----~~g~~~~v~~~L~~~g~~---~~~~~~v~~~p~~~~v~~~~~~~~~~~~ 88 (382)
T PRK10624 17 AIGALTDEVKRRGFKKALIVTDKTLV-----KCGVVAKVTDVLDAAGLA---YEIYDGVKPNPTIEVVKEGVEVFKASGA 88 (382)
T ss_pred HHHHHHHHHHhcCCCEEEEEeCcchh-----hCcchHHHHHHHHHCCCe---EEEeCCCCCCcCHHHHHHHHHHHHhcCC
Confidence 34444455555665433333343211 012345556666677776 33221 2222 0123566678888899
Q ss_pred cEEE-Ecc
Q 028129 181 DLVI-ISM 187 (213)
Q Consensus 181 DLIV-mG~ 187 (213)
|+|| +|.
T Consensus 89 D~IIaiGG 96 (382)
T PRK10624 89 DYLIAIGG 96 (382)
T ss_pred CEEEEeCC
Confidence 9887 554
No 117
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=53.83 E-value=93 Score=26.31 Aligned_cols=45 Identities=11% Similarity=0.129 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHhCCCCceeEEEEEcccCCchHHHHHHHHHHcCCcEEEEccc
Q 028129 137 NRLSSIRWHLSEGGFQEFRLLERLGEGSSKPTAIIGDVADELNLDLVIISME 188 (213)
Q Consensus 137 ~~l~~~~~~l~~~g~~~~~v~~~v~~G~~~p~~~Il~~A~e~~aDLIVmG~~ 188 (213)
+.+.++++...+.+ + +..++- |. ...+-...+.+.++|.+|+|+.
T Consensus 155 ~Ki~~lr~~~~~~~-~---~~IeVD-GG--I~~~t~~~~~~AGad~~VaGSa 199 (220)
T COG0036 155 EKIRELRAMIDERL-D---ILIEVD-GG--INLETIKQLAAAGADVFVAGSA 199 (220)
T ss_pred HHHHHHHHHhcccC-C---eEEEEe-CC--cCHHHHHHHHHcCCCEEEEEEE
Confidence 33444444444444 3 554444 43 5666667777889999999993
No 118
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=53.67 E-value=1.4e+02 Score=25.29 Aligned_cols=46 Identities=11% Similarity=0.175 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHhCCCCceeEEEEEcccCCchHHHHHHHHHHcCCcEEEEccc
Q 028129 137 NRLSSIRWHLSEGGFQEFRLLERLGEGSSKPTAIIGDVADELNLDLVIISME 188 (213)
Q Consensus 137 ~~l~~~~~~l~~~g~~~~~v~~~v~~G~~~p~~~Il~~A~e~~aDLIVmG~~ 188 (213)
+.+.++++...+.+.+ +..++-.| ...+-+..+.+.++|.+|+|+.
T Consensus 154 ~KI~~lr~~~~~~~~~---~~IeVDGG---I~~~~i~~~~~aGad~~V~Gss 199 (229)
T PRK09722 154 DKIAELKALRERNGLE---YLIEVDGS---CNQKTYEKLMEAGADVFIVGTS 199 (229)
T ss_pred HHHHHHHHHHHhcCCC---eEEEEECC---CCHHHHHHHHHcCCCEEEEChH
Confidence 3344444555555655 55555444 4444555566679999999964
No 119
>COG2201 CheB Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain [Cell motility and secretion / Signal transduction mechanisms]
Probab=53.56 E-value=80 Score=28.59 Aligned_cols=45 Identities=18% Similarity=0.260 Sum_probs=33.9
Q ss_pred hHHHHHHHHHHcCCcEEEEcccCCCCCCchHHH-HHhcCCCcEEEE
Q 028129 167 PTAIIGDVADELNLDLVIISMEAIHSKHVDANL-LAEFIPCPVLLL 211 (213)
Q Consensus 167 p~~~Il~~A~e~~aDLIVmG~~g~~~~Gs~~~~-vl~~a~cPVLvV 211 (213)
...+-++.+++.+.|+|.|.-.-....|++... +++..+|||+++
T Consensus 35 ng~~a~~~~~~~~PDVi~ld~emp~mdgl~~l~~im~~~p~pVimv 80 (350)
T COG2201 35 NGREAIDKVKKLKPDVITLDVEMPVMDGLEALRKIMRLRPLPVIMV 80 (350)
T ss_pred CHHHHHHHHHhcCCCEEEEecccccccHHHHHHHHhcCCCCcEEEE
Confidence 345667778889999999988654345777654 467789999987
No 120
>PRK05973 replicative DNA helicase; Provisional
Probab=52.97 E-value=1.4e+02 Score=25.29 Aligned_cols=138 Identities=12% Similarity=0.065 Sum_probs=70.2
Q ss_pred hhhhhhcccCCCCCcccchhhhhhcCCCcEEEEeeCCCCCCCHHHHHHHHHHHHHHhhcCCEEEEEEEeCCCCCChhhHH
Q 028129 57 FRRIGHKAKVKSPESEINSVAEAFTNFKHLLLPITDQNPYLSEGTRQAAATTAALAKKYGADITVVVIDERQKESLPEHE 136 (213)
Q Consensus 57 ~~r~~~~a~~~~~~~~~~~~~~~~~~~k~ILV~vD~~~~~~S~~s~~Al~~A~~LA~~~~a~L~ll~V~~~~~~~~~~~~ 136 (213)
|+.|..-+.|-....|..-....+.+-.-+||.=.+ |+-.+.-+++++...++. |-++.++...+.. +
T Consensus 38 ~~~w~~~~~~~~~~~p~~~l~GGl~~Gsl~LIaG~P----G~GKT~lalqfa~~~a~~-Ge~vlyfSlEes~-------~ 105 (237)
T PRK05973 38 FSSWSLLAAKAAATTPAEELFSQLKPGDLVLLGARP----GHGKTLLGLELAVEAMKS-GRTGVFFTLEYTE-------Q 105 (237)
T ss_pred cchHHHHHHhccCCCCHHHhcCCCCCCCEEEEEeCC----CCCHHHHHHHHHHHHHhc-CCeEEEEEEeCCH-------H
Confidence 455655444444333432222344444556766666 788888999999888865 6666666666542 1
Q ss_pred HHHHHHHHHHHhCCCC--cee--EEEEEcccCCchHHHHHHHHHHcCCcEEEEcccC-----CCCCCchHH-----HHHh
Q 028129 137 NRLSSIRWHLSEGGFQ--EFR--LLERLGEGSSKPTAIIGDVADELNLDLVIISMEA-----IHSKHVDAN-----LLAE 202 (213)
Q Consensus 137 ~~l~~~~~~l~~~g~~--~~~--v~~~v~~G~~~p~~~Il~~A~e~~aDLIVmG~~g-----~~~~Gs~~~-----~vl~ 202 (213)
+..++ +...|++ ++. ......... .....|.+..++++.|+||+=.=. ......... .+++
T Consensus 106 ~i~~R----~~s~g~d~~~~~~~~~~d~~d~~-~~~~ii~~l~~~~~~~lVVIDsLq~l~~~~~~~el~~~~~~Lk~~Ak 180 (237)
T PRK05973 106 DVRDR----LRALGADRAQFADLFEFDTSDAI-CADYIIARLASAPRGTLVVIDYLQLLDQRREKPDLSVQVRALKSFAR 180 (237)
T ss_pred HHHHH----HHHcCCChHHhccceEeecCCCC-CHHHHHHHHHHhhCCCEEEEEcHHHHhhcccchhHHHHHHHHHHHHH
Confidence 21222 1122222 110 111111111 133345556667789999986621 100111111 1378
Q ss_pred cCCCcEEEE
Q 028129 203 FIPCPVLLL 211 (213)
Q Consensus 203 ~a~cPVLvV 211 (213)
+..|||+++
T Consensus 181 ~~gitvIl~ 189 (237)
T PRK05973 181 ERGLIIVFI 189 (237)
T ss_pred hCCCeEEEE
Confidence 899999886
No 121
>cd06361 PBP1_GPC6A_like Ligand-binding domain of the promiscuous L-alpha-amino acid receptor GPRC6A which is a broad-spectrum amino acid-sensing receptor. This family includes the ligand-binding domain of the promiscuous L-alpha-amino acid receptor GPRC6A which is a broad-spectrum amino acid-sensing receptor, and its fish homolog, the 5.24 chemoreceptor. GPRC6A is a member of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into cellular responses.
Probab=52.76 E-value=1.8e+02 Score=26.30 Aligned_cols=99 Identities=15% Similarity=0.066 Sum_probs=57.0
Q ss_pred CCCcEEEEeeCCCCCCCHHHHHHHHHHHHHHhhcCCEEEEEEEeCCCCCChhhHHHHHHHHHHHHHhCCCCceeEEEEEc
Q 028129 82 NFKHLLLPITDQNPYLSEGTRQAAATTAALAKKYGADITVVVIDERQKESLPEHENRLSSIRWHLSEGGFQEFRLLERLG 161 (213)
Q Consensus 82 ~~k~ILV~vD~~~~~~S~~s~~Al~~A~~LA~~~~a~L~ll~V~~~~~~~~~~~~~~l~~~~~~l~~~g~~~~~v~~~v~ 161 (213)
..++|.+-.+ .++.....++.....+++.|..+......................+...++..+.+ +.....
T Consensus 171 ~w~~Vaii~~-----~d~yG~~~~~~f~~~~~~~GicIa~~e~~~~~~~~~~~~~~~~~~~~~~ik~~~a~---vVvv~~ 242 (403)
T cd06361 171 GWNWVGIIIT-----DDDYGRSALETFIIQAEANGVCIAFKEILPASLSDNTKLNRIIRTTEKIIEENKVN---VIVVFA 242 (403)
T ss_pred CCcEEEEEEe-----cCchHHHHHHHHHHHHHHCCeEEEEEEEecCccCcchhHHHHHHHHHHHHhcCCCe---EEEEEe
Confidence 5677766666 35666677777777777777655444222221111111112223333334555555 554333
Q ss_pred ccCCchHHHHHHHHHHcCCcEEEEcccCC
Q 028129 162 EGSSKPTAIIGDVADELNLDLVIISMEAI 190 (213)
Q Consensus 162 ~G~~~p~~~Il~~A~e~~aDLIVmG~~g~ 190 (213)
.. .....|++.|++.+.+.+.+|+.+-
T Consensus 243 ~~--~~~~~l~~~a~~~g~~~~wigs~~w 269 (403)
T cd06361 243 RQ--FHVFLLFNKAIERNINKVWIASDNW 269 (403)
T ss_pred Ch--HHHHHHHHHHHHhCCCeEEEEECcc
Confidence 33 3667788999999999999998764
No 122
>PRK14664 tRNA-specific 2-thiouridylase MnmA; Provisional
Probab=52.35 E-value=1.8e+02 Score=26.32 Aligned_cols=91 Identities=15% Similarity=0.131 Sum_probs=50.9
Q ss_pred CCcEEEEeeCCCCCCCHHHHHHHHHHHHHHhhcCCEEEEEEEeCCCCCChhhHHHHHHHHHHHHHhCCCCceeEEEE---
Q 028129 83 FKHLLLPITDQNPYLSEGTRQAAATTAALAKKYGADITVVVIDERQKESLPEHENRLSSIRWHLSEGGFQEFRLLER--- 159 (213)
Q Consensus 83 ~k~ILV~vD~~~~~~S~~s~~Al~~A~~LA~~~~a~L~ll~V~~~~~~~~~~~~~~l~~~~~~l~~~g~~~~~v~~~--- 159 (213)
.++|+|++. |.-.|.-++.. .++.|.++..+++..... + .+.++......|++-+-+...
T Consensus 5 ~~kVlVa~S-----GGvDSsv~a~l----L~~~G~eV~av~~~~~~~----e----~~~a~~va~~LGI~~~vvd~~~~f 67 (362)
T PRK14664 5 KKRVLVGMS-----GGIDSTATCLM----LQEQGYEIVGVTMRVWGD----E----PQDARELAARMGIEHYVADERVPF 67 (362)
T ss_pred CCEEEEEEe-----CCHHHHHHHHH----HHHcCCcEEEEEecCcch----h----HHHHHHHHHHhCCCEEEEeChHHH
Confidence 468999999 66666654443 234567787777754211 1 122333334445541111100
Q ss_pred -----------EcccC-------Cc--h-HHHHHHHHHHcCCcEEEEcccCC
Q 028129 160 -----------LGEGS-------SK--P-TAIIGDVADELNLDLVIISMEAI 190 (213)
Q Consensus 160 -----------v~~G~-------~~--p-~~~Il~~A~e~~aDLIVmG~~g~ 190 (213)
...|. |+ . ...+.++|++.++|.|.-|++.+
T Consensus 68 ~~~v~~~~~~~~~~G~tpnpC~~Cn~~iKf~~L~~~A~~~G~~~IATGHyar 119 (362)
T PRK14664 68 KDTIVKNFIDEYRQGRTPNPCVMCNPLFKFRMLIEWADKLGCAWIATGHYSR 119 (362)
T ss_pred HHHHHHHhHHHHHcCCCCCCchhhhHHHHHHHHHHHHHHcCCCEEEECCccc
Confidence 01121 00 1 34688999999999999999874
No 123
>PF02670 DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; InterPro: IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase synthesises 2-C-methyl-D-erythritol 4-phosphate from 1-deoxy-D-xylulose 5-phosphate in a single step by intramolecular rearrangement and reduction and is responsible for terpenoid biosynthesis in some organisms []. In Arabidopsis thaliana 1-deoxy-D-xylulose 5-phosphate reductoisomerase is the first committed enzyme of the non-mevalonate pathway for isoprenoid biosynthesis. The enzyme requires Mn2+, Co2+ or Mg2+ for activity, with the first being most effective. This domain is found at the N terminus of bacterial and plant 1-deoxy-D-xylulose 5-phosphate reductoisomerases.; GO: 0070402 NADPH binding, 0055114 oxidation-reduction process; PDB: 1R0K_D 1R0L_C 3A14_A 3A06_A 3AUA_A 3AU9_B 3AU8_B 3IIE_A 2Y1D_B 4AIC_A ....
Probab=51.69 E-value=77 Score=24.41 Aligned_cols=44 Identities=16% Similarity=0.203 Sum_probs=31.1
Q ss_pred EcccCCchHHHHHHHHHHcCCcEEEEcccCCCCCCchHHHHHhcCCCcEE
Q 028129 160 LGEGSSKPTAIIGDVADELNLDLVIISMEAIHSKHVDANLLAEFIPCPVL 209 (213)
Q Consensus 160 v~~G~~~p~~~Il~~A~e~~aDLIVmG~~g~~~~Gs~~~~vl~~a~cPVL 209 (213)
+..|. +.+.+.+++.++|++|.+.-|- .|+...+.+-+...-+.
T Consensus 75 v~~G~----~~l~~~~~~~~~D~vv~Ai~G~--aGL~pt~~Ai~~gk~ia 118 (129)
T PF02670_consen 75 VLSGP----EGLEELAEEPEVDIVVNAIVGF--AGLKPTLAAIKAGKDIA 118 (129)
T ss_dssp EEESH----HHHHHHHTHTT-SEEEE--SSG--GGHHHHHHHHHTTSEEE
T ss_pred EEeCh----HHHHHHhcCCCCCEEEEeCccc--chHHHHHHHHHCCCeEE
Confidence 34475 8899999999999999999987 78888776555555444
No 124
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=51.36 E-value=55 Score=23.57 Aligned_cols=62 Identities=15% Similarity=0.176 Sum_probs=36.5
Q ss_pred HHHHHHHHHhCCCCceeEEEEEcccCCchHHHHHHHHHHcCCcEEEEcccCCCCCCch-HHHHHhcCCCcEEEEc
Q 028129 139 LSSIRWHLSEGGFQEFRLLERLGEGSSKPTAIIGDVADELNLDLVIISMEAIHSKHVD-ANLLAEFIPCPVLLLP 212 (213)
Q Consensus 139 l~~~~~~l~~~g~~~~~v~~~v~~G~~~p~~~Il~~A~e~~aDLIVmG~~g~~~~Gs~-~~~vl~~a~cPVLvVp 212 (213)
.+++++.+.+.|++ ++..- . ...++-+... ++|+|++|.+=+ .-.. -...+....+||.+++
T Consensus 20 ~~k~~~~~~~~gi~---~~v~a--~---~~~~~~~~~~--~~Dvill~pqi~--~~~~~i~~~~~~~~ipv~~I~ 82 (95)
T TIGR00853 20 VNKMNKAAEEYGVP---VKIAA--G---SYGAAGEKLD--DADVVLLAPQVA--YMLPDLKKETDKKGIPVEVIN 82 (95)
T ss_pred HHHHHHHHHHCCCc---EEEEE--e---cHHHHHhhcC--CCCEEEECchHH--HHHHHHHHHhhhcCCCEEEeC
Confidence 45566667778887 54322 1 3444555553 589999988643 1111 1123666778998875
No 125
>TIGR00032 argG argininosuccinate synthase. argG in bacteria, ARG1 in Saccharomyces cerevisiae. There is a very unusual clustering in the alignment, with a deep split between one cohort of E. coli, H. influenzae, and Streptomyces, and the other cohort of eukaryotes, archaea, and the rest of the eubacteria.
Probab=51.19 E-value=2e+02 Score=26.41 Aligned_cols=91 Identities=14% Similarity=0.077 Sum_probs=51.7
Q ss_pred cEEEEeeCCCCCCCHHHHHHHHHHHHHHhhcCCEEEEEEEeCCCCCChhhHHHHHHHHHHHHHhCCCCceeEE-E-----
Q 028129 85 HLLLPITDQNPYLSEGTRQAAATTAALAKKYGADITVVVIDERQKESLPEHENRLSSIRWHLSEGGFQEFRLL-E----- 158 (213)
Q Consensus 85 ~ILV~vD~~~~~~S~~s~~Al~~A~~LA~~~~a~L~ll~V~~~~~~~~~~~~~~l~~~~~~l~~~g~~~~~v~-~----- 158 (213)
+|++++. |.-.+.-++.++.+ .|.++..++++.... +..++.+++...+.|+..+.+. .
T Consensus 1 kVvla~S-----GGlDSsvll~~l~e----~g~~V~av~id~Gq~------~~e~~~a~~~a~~lGi~~~~viD~~~ef~ 65 (394)
T TIGR00032 1 KVVLAYS-----GGLDTSVCLKWLRE----KGYEVIAYTADVGQP------EEDIDAIPEKALEYGAENHYTIDAREEFV 65 (394)
T ss_pred CEEEEEc-----CCHHHHHHHHHHHH----cCCEEEEEEEecCCC------hHHHHHHHHHHHHhCCCeEEEEeCHHHHH
Confidence 4788888 67777766665533 277888888876532 1122333333333343211100 0
Q ss_pred -----------EEccc---------CCchHHHHHHHHHHcCCcEEEEcccCC
Q 028129 159 -----------RLGEG---------SSKPTAIIGDVADELNLDLVIISMEAI 190 (213)
Q Consensus 159 -----------~v~~G---------~~~p~~~Il~~A~e~~aDLIVmG~~g~ 190 (213)
...+| ..-.++.+.++|++.++|.|+-|+.+.
T Consensus 66 ~~~~~~~i~~n~~y~~~Y~l~t~laR~li~~~l~~~A~~~G~~~Ia~G~t~~ 117 (394)
T TIGR00032 66 KDYGFAAIQANAFYEGTYPLSTALARPLIAKKLVEAAKKEGANAVAHGCTGK 117 (394)
T ss_pred HhhchhhhcCCccccCcccccchhhHHHHHHHHHHHHHHcCCCEEEECccCC
Confidence 00111 002456789999999999999999654
No 126
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=50.94 E-value=1.6e+02 Score=25.35 Aligned_cols=107 Identities=13% Similarity=0.089 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHHhhcCCEEEEE--EEeCCCCCChhhHHHHHHHHHHHHHhCCCCceeEEEEEcccCCchHHHHHHHHHH
Q 028129 100 GTRQAAATTAALAKKYGADITVV--VIDERQKESLPEHENRLSSIRWHLSEGGFQEFRLLERLGEGSSKPTAIIGDVADE 177 (213)
Q Consensus 100 ~s~~Al~~A~~LA~~~~a~L~ll--~V~~~~~~~~~~~~~~l~~~~~~l~~~g~~~~~v~~~v~~G~~~p~~~Il~~A~e 177 (213)
-..++++.-++.....|.+-.++ +..+....+.++.++.++.+.+.. ...+. +...+..+. .-..++.+.|++
T Consensus 18 iD~~~l~~l~~~l~~~Gv~gi~v~GstGE~~~Ls~eEr~~l~~~~~~~~-~~~~p---vi~gv~~~t-~~~i~~a~~a~~ 92 (289)
T cd00951 18 FDEDAYRAHVEWLLSYGAAALFAAGGTGEFFSLTPDEYAQVVRAAVEET-AGRVP---VLAGAGYGT-ATAIAYAQAAEK 92 (289)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHh-CCCCC---EEEecCCCH-HHHHHHHHHHHH
Confidence 34445554444444455443322 333322223233333344433332 22344 554443222 344566689999
Q ss_pred cCCcEEEEcccCCCCC---CchHHH--HHhcCCCcEEEE
Q 028129 178 LNLDLVIISMEAIHSK---HVDANL--LAEFIPCPVLLL 211 (213)
Q Consensus 178 ~~aDLIVmG~~g~~~~---Gs~~~~--vl~~a~cPVLvV 211 (213)
.++|-|++........ +....+ ++..+++||++.
T Consensus 93 ~Gad~v~~~pP~y~~~~~~~i~~~f~~v~~~~~~pi~lY 131 (289)
T cd00951 93 AGADGILLLPPYLTEAPQEGLYAHVEAVCKSTDLGVIVY 131 (289)
T ss_pred hCCCEEEECCCCCCCCCHHHHHHHHHHHHhcCCCCEEEE
Confidence 9999999977543111 222222 477789999875
No 127
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=50.91 E-value=34 Score=26.25 Aligned_cols=41 Identities=20% Similarity=0.056 Sum_probs=29.6
Q ss_pred HHHHHhCCCCceeEEEEEcccCCchHHHHHHHHHHcCCcEEEEcccC
Q 028129 143 RWHLSEGGFQEFRLLERLGEGSSKPTAIIGDVADELNLDLVIISMEA 189 (213)
Q Consensus 143 ~~~l~~~g~~~~~v~~~v~~G~~~p~~~Il~~A~e~~aDLIVmG~~g 189 (213)
...++..|++ +...- +. .+.+++++.|.+.++|.|+|.+-.
T Consensus 23 ~~~l~~~Gfe---Vi~lg--~~-~s~e~~v~aa~e~~adii~iSsl~ 63 (132)
T TIGR00640 23 ATAYADLGFD---VDVGP--LF-QTPEEIARQAVEADVHVVGVSSLA 63 (132)
T ss_pred HHHHHhCCcE---EEECC--CC-CCHHHHHHHHHHcCCCEEEEcCch
Confidence 3456778888 65322 33 467889999999999999997753
No 128
>cd08194 Fe-ADH6 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions.
Probab=50.81 E-value=1.8e+02 Score=26.10 Aligned_cols=46 Identities=13% Similarity=0.039 Sum_probs=26.0
Q ss_pred HHHHHHHHHHhCCCCceeEEEEE-cccC--CchHHHHHHHHHHcCCcEEE-Ec
Q 028129 138 RLSSIRWHLSEGGFQEFRLLERL-GEGS--SKPTAIIGDVADELNLDLVI-IS 186 (213)
Q Consensus 138 ~l~~~~~~l~~~g~~~~~v~~~v-~~G~--~~p~~~Il~~A~e~~aDLIV-mG 186 (213)
..+.+...+.+.|++ +.... ..++ .+-.+.+++.+++.++|.|| +|
T Consensus 39 ~~~~v~~~L~~~gi~---~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiG 88 (375)
T cd08194 39 LVDKLTDSLKKEGIE---SAIFDDVVSEPTDESVEEGVKLAKEGGCDVIIALG 88 (375)
T ss_pred hHHHHHHHHHHCCCe---EEEECCCCCCcCHHHHHHHHHHHHhcCCCEEEEeC
Confidence 345556666666776 33221 2222 01235666777888999887 44
No 129
>PRK00143 mnmA tRNA-specific 2-thiouridylase MnmA; Reviewed
Probab=50.54 E-value=1.9e+02 Score=25.89 Aligned_cols=23 Identities=22% Similarity=0.096 Sum_probs=19.7
Q ss_pred HHHHHHHHHHcCCcEEEEcccCC
Q 028129 168 TAIIGDVADELNLDLVIISMEAI 190 (213)
Q Consensus 168 ~~~Il~~A~e~~aDLIVmG~~g~ 190 (213)
...+.++|+++++|.|+.|++.+
T Consensus 105 ~~~l~~~A~~~g~~~IATGH~a~ 127 (346)
T PRK00143 105 FKAFLEYARELGADYIATGHYAR 127 (346)
T ss_pred HHHHHHHHHHCCCCEEEeeeecc
Confidence 46778899999999999999764
No 130
>KOG2310 consensus DNA repair exonuclease MRE11 [Replication, recombination and repair]
Probab=50.48 E-value=14 Score=35.40 Aligned_cols=22 Identities=18% Similarity=0.369 Sum_probs=20.3
Q ss_pred hHHHHHHHHHHcCCcEEEEccc
Q 028129 167 PTAIIGDVADELNLDLVIISME 188 (213)
Q Consensus 167 p~~~Il~~A~e~~aDLIVmG~~ 188 (213)
..++|++.|+++++|||++|.-
T Consensus 40 tFeEIl~iA~e~~VDmiLlGGD 61 (646)
T KOG2310|consen 40 TFEEILEIAQENDVDMILLGGD 61 (646)
T ss_pred HHHHHHHHHHhcCCcEEEecCc
Confidence 6799999999999999999983
No 131
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=50.36 E-value=43 Score=31.01 Aligned_cols=47 Identities=15% Similarity=0.155 Sum_probs=31.5
Q ss_pred EEcccCCchHHHHHHHHHH----cCCcEEEEcccCCCCCCchHHH-------H---HhcCCCcEEE
Q 028129 159 RLGEGSSKPTAIIGDVADE----LNLDLVIISMEAIHSKHVDANL-------L---AEFIPCPVLL 210 (213)
Q Consensus 159 ~v~~G~~~p~~~Il~~A~e----~~aDLIVmG~~g~~~~Gs~~~~-------v---l~~a~cPVLv 210 (213)
..+.|+ .....|++..+. .++|+||+|.-|- +...+ + +..+++||+.
T Consensus 164 ~~vQG~-~a~~~i~~al~~~~~~~~~dviii~RGGG----s~eDL~~Fn~e~~~rai~~~~~Pvis 224 (432)
T TIGR00237 164 TLVQGE-GAVQSIVESIELANTKNECDVLIVGRGGG----SLEDLWSFNDEKVARAIFLSKIPIIS 224 (432)
T ss_pred ccccCc-cHHHHHHHHHHHhhcCCCCCEEEEecCCC----CHHHhhhcCcHHHHHHHHcCCCCEEE
Confidence 456788 777777765442 2479999987653 33322 2 7889999874
No 132
>PLN02828 formyltetrahydrofolate deformylase
Probab=50.28 E-value=1.7e+02 Score=25.39 Aligned_cols=88 Identities=10% Similarity=0.058 Sum_probs=53.2
Q ss_pred CCcEEEEeeCCCCCCCHHHHHHHHHHHHHHhhcCCEEEEEEEeCCCCCChhhHHHHHHHHHHHHHhCCCCceeEEEEEc-
Q 028129 83 FKHLLLPITDQNPYLSEGTRQAAATTAALAKKYGADITVVVIDERQKESLPEHENRLSSIRWHLSEGGFQEFRLLERLG- 161 (213)
Q Consensus 83 ~k~ILV~vD~~~~~~S~~s~~Al~~A~~LA~~~~a~L~ll~V~~~~~~~~~~~~~~l~~~~~~l~~~g~~~~~v~~~v~- 161 (213)
.++|+|-+. ++..+.+++-++..- ...++++.++......... ..+.+..++.|++ +...-.
T Consensus 70 ~~riavlvS-----g~g~nl~~ll~~~~~-g~l~~eI~~ViSn~~~~~~--------a~~~~~A~~~gIP---~~~~~~~ 132 (268)
T PLN02828 70 KYKIAVLAS-----KQDHCLIDLLHRWQD-GRLPVDITCVISNHERGPN--------THVMRFLERHGIP---YHYLPTT 132 (268)
T ss_pred CcEEEEEEc-----CCChhHHHHHHhhhc-CCCCceEEEEEeCCCCCCC--------chHHHHHHHcCCC---EEEeCCC
Confidence 468999999 788888888777544 3356777766555432111 1223345667888 332111
Q ss_pred ccCCchHHHHHHHHHHcCCcEEEEcccCC
Q 028129 162 EGSSKPTAIIGDVADELNLDLVIISMEAI 190 (213)
Q Consensus 162 ~G~~~p~~~Il~~A~e~~aDLIVmG~~g~ 190 (213)
... +..+.+++..+ ++|+||+....+
T Consensus 133 ~~~-~~e~~~~~~l~--~~DliVLAgym~ 158 (268)
T PLN02828 133 KEN-KREDEILELVK--GTDFLVLARYMQ 158 (268)
T ss_pred CCC-CHHHHHHHHHh--cCCEEEEeeehH
Confidence 112 23456777665 599999998664
No 133
>cd01997 GMP_synthase_C The C-terminal domain of GMP synthetase. It contains two subdomains; the ATP pyrophosphatase domain which closes to the N-termial and the dimerization domain at C-terminal end. The ATP-PPase is a twisted, five-stranded parallel beta-sheet sandwiched between helical layers. It has a signature nucleotide-binding motif, or P-loop, at the end of the first-beta strand.The dimerization domain formed by the C-terminal 115 amino acid for prokaryotic proteins. It is adjacent to teh ATP-binding site of the ATP-PPase subdomain. The largest difference between the primary sequence of prokaryotic and eukaryotic GMP synthetase map to the dimerization domain.Eukaryotic GMP synthetase has several large insertions relative to prokaryotes.
Probab=50.23 E-value=1.7e+02 Score=25.58 Aligned_cols=91 Identities=13% Similarity=0.115 Sum_probs=50.9
Q ss_pred cEEEEeeCCCCCCCHHHHHHHHHHHHHHhhcCCEEEEEEEeCCCCCChhhHHHHHHHHHHHHHhCCC-CceeEEEEE---
Q 028129 85 HLLLPITDQNPYLSEGTRQAAATTAALAKKYGADITVVVIDERQKESLPEHENRLSSIRWHLSEGGF-QEFRLLERL--- 160 (213)
Q Consensus 85 ~ILV~vD~~~~~~S~~s~~Al~~A~~LA~~~~a~L~ll~V~~~~~~~~~~~~~~l~~~~~~l~~~g~-~~~~v~~~v--- 160 (213)
+|++++. |.-.|.-++..+.. ..|.++.+++++...... ...+.+++.+.+.|. + +.+...-
T Consensus 1 kVlVa~S-----GGVDSsvla~ll~~---~lG~~v~aV~vd~g~~~~-----~E~~~~~~~~~~~g~i~-~~vvd~~e~f 66 (295)
T cd01997 1 KVILALS-----GGVDSTVAAVLLHK---AIGDRLTCVFVDNGLLRK-----NEAERVEELFSKLLGIN-LIVVDASERF 66 (295)
T ss_pred CEEEEEc-----CChHHHHHHHHHHH---HhCCcEEEEEecCCCCCh-----HHHHHHHHHHHHhCCCc-EEEEcCcHHH
Confidence 4788888 77777666655543 245678888888754221 112344444444443 3 2111000
Q ss_pred ---cccCCc-----------hHHHHHHHHHHcC-CcEEEEcccC
Q 028129 161 ---GEGSSK-----------PTAIIGDVADELN-LDLVIISMEA 189 (213)
Q Consensus 161 ---~~G~~~-----------p~~~Il~~A~e~~-aDLIVmG~~g 189 (213)
..|..+ -.+.+.++|++++ ++.|+-|++.
T Consensus 67 l~~l~~v~npe~rr~~~g~~~~~~l~~~A~~~g~~~~Ia~Gh~~ 110 (295)
T cd01997 67 LSALKGVTDPEEKRKIIGETFIEVFEEEAKKLGLAEYLAQGTLY 110 (295)
T ss_pred HHHhcCCCCHHHHHHHhhHHHHHHHHHHHHHcCCCCEEEECCcc
Confidence 011101 2235677899999 9999999864
No 134
>PF02887 PK_C: Pyruvate kinase, alpha/beta domain; InterPro: IPR015795 Pyruvate kinase (2.7.1.40 from EC) (PK) catalyses the final step in glycolysis [], the conversion of phosphoenolpyruvate to pyruvate with concomitant phosphorylation of ADP to ATP: ADP + phosphoenolpyruvate = ATP + pyruvate The enzyme, which is found in all living organisms, requires both magnesium and potassium ions for its activity. In vertebrates, there are four tissue-specific isozymes: L (liver), R (red cells), M1 (muscle, heart and brain), and M2 (early foetal tissue). In plants, PK exists as cytoplasmic and plastid isozymes, while most bacteria and lower eukaryotes have one form, except in certain bacteria, such as Escherichia coli, that have two isozymes. All isozymes appear to be tetramers of identical subunits of ~500 residues. PK helps control the rate of glycolysis, along with phosphofructokinase (IPR000023 from INTERPRO) and hexokinase (IPR001312 from INTERPRO). PK possesses allosteric sites for numerous effectors, yet the isozymes respond differently, in keeping with their different tissue distributions []. The activity of L-type (liver) PK is increased by fructose-1,6-bisphosphate (F1,6BP) and lowered by ATP and alanine (gluconeogenic precursor), therefore when glucose levels are high, glycolysis is promoted, and when levels are low, gluconeogenesis is promoted. L-type PK is also hormonally regulated, being activated by insulin and inhibited by glucagon, which covalently modifies the PK enzyme. M1-type (muscle, brain) PK is inhibited by ATP, but F1,6BP and alanine have no effect, which correlates with the function of muscle and brain, as opposed to the liver. The structure of several pyruvate kinases from various organisms have been determined [, ]. The protein comprises three-four domains: a small N-terminal helical domain (absent in bacterial PK), a beta/alpha-barrel domain, a beta-barrel domain (inserted within the beta/alpha-barrel domain), and a 3-layer alpha/beta/alpha sandwich domain. This entry represents the 3-layer alpha/beta/alpha sandwich domain. This domain has a similar topology to the archaeal hypothetical protein, MTH1675 from Methanobacterium thermoautotrophicum.; PDB: 3QTG_B 1VP8_A 1T57_C 3N25_A 1AQF_C 2G50_B 1F3X_G 1A5U_F 1A49_E 1F3W_C ....
Probab=49.79 E-value=38 Score=25.00 Aligned_cols=41 Identities=17% Similarity=0.297 Sum_probs=31.3
Q ss_pred hHHHHHHHHHHcCCcEEEEcccCCCCCCchHHHHHh-cCCCcEEEE
Q 028129 167 PTAIIGDVADELNLDLVIISMEAIHSKHVDANLLAE-FIPCPVLLL 211 (213)
Q Consensus 167 p~~~Il~~A~e~~aDLIVmG~~g~~~~Gs~~~~vl~-~a~cPVLvV 211 (213)
......+.|++.++..||+-++ +|.+...+.+ +-+||++++
T Consensus 4 ia~aa~~~A~~~~ak~Ivv~T~----sG~ta~~isk~RP~~pIiav 45 (117)
T PF02887_consen 4 IARAAVELAEDLNAKAIVVFTE----SGRTARLISKYRPKVPIIAV 45 (117)
T ss_dssp HHHHHHHHHHHHTESEEEEE-S----SSHHHHHHHHT-TSSEEEEE
T ss_pred HHHHHHHHHHhcCCCEEEEECC----CchHHHHHHhhCCCCeEEEE
Confidence 4567788999999999999876 4678877754 477999876
No 135
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=49.32 E-value=67 Score=23.03 Aligned_cols=62 Identities=13% Similarity=0.131 Sum_probs=36.7
Q ss_pred HHHHHHHHHhCCCCceeEEEEEcccCCchHHHHHHHHHHcCCcEEEEcccCCCCCCchHHH-HHhcCCCcEEEEc
Q 028129 139 LSSIRWHLSEGGFQEFRLLERLGEGSSKPTAIIGDVADELNLDLVIISMEAIHSKHVDANL-LAEFIPCPVLLLP 212 (213)
Q Consensus 139 l~~~~~~l~~~g~~~~~v~~~v~~G~~~p~~~Il~~A~e~~aDLIVmG~~g~~~~Gs~~~~-vl~~a~cPVLvVp 212 (213)
.+++++.+.+.|++ ++..- . ....+-++. .++|+|+++.+=+ .-..... .+....+||.+++
T Consensus 16 ~~ki~~~~~~~~~~---~~v~~--~---~~~~~~~~~--~~~Diil~~Pqv~--~~~~~i~~~~~~~~~pv~~I~ 78 (96)
T cd05564 16 VKKMKKAAEKRGID---AEIEA--V---PESELEEYI--DDADVVLLGPQVR--YMLDEVKKKAAEYGIPVAVID 78 (96)
T ss_pred HHHHHHHHHHCCCc---eEEEE--e---cHHHHHHhc--CCCCEEEEChhHH--HHHHHHHHHhccCCCcEEEcC
Confidence 45666777888887 44322 2 334444444 4689999987644 2111111 2456789998876
No 136
>PRK04527 argininosuccinate synthase; Provisional
Probab=49.00 E-value=1.6e+02 Score=27.08 Aligned_cols=94 Identities=14% Similarity=0.059 Sum_probs=53.3
Q ss_pred CCcEEEEeeCCCCCCCHHHHHHHHHHHHHHhhcCCEEEEEEEeCCCCCChhhHHHHHHHHHHHHHhCCCCceeEE-E---
Q 028129 83 FKHLLLPITDQNPYLSEGTRQAAATTAALAKKYGADITVVVIDERQKESLPEHENRLSSIRWHLSEGGFQEFRLL-E--- 158 (213)
Q Consensus 83 ~k~ILV~vD~~~~~~S~~s~~Al~~A~~LA~~~~a~L~ll~V~~~~~~~~~~~~~~l~~~~~~l~~~g~~~~~v~-~--- 158 (213)
.++|+|++. |.-.+.-++.++.. .|.+++.++++...... ..++.+++.....|+..+.+. .
T Consensus 2 ~~kVvVA~S-----GGvDSSvla~~l~e----~G~~Viavt~d~gq~~~-----~El~~a~~~A~~lG~~~~~viD~~ee 67 (400)
T PRK04527 2 SKDIVLAFS-----GGLDTSFCIPYLQE----RGYAVHTVFADTGGVDA-----EERDFIEKRAAELGAASHVTVDGGPA 67 (400)
T ss_pred CCcEEEEEc-----CChHHHHHHHHHHH----cCCcEEEEEEEeCCCCH-----HHHHHHHHHHHHcCCCeEEEecCHHH
Confidence 467888888 66666656655433 36677777776554211 123333333444444211100 0
Q ss_pred -------------EEccc--------CCchHHHHHHHHHHcCCcEEEEcccCC
Q 028129 159 -------------RLGEG--------SSKPTAIIGDVADELNLDLVIISMEAI 190 (213)
Q Consensus 159 -------------~v~~G--------~~~p~~~Il~~A~e~~aDLIVmG~~g~ 190 (213)
...+| .+-....++++|++.++|.|.-|+.++
T Consensus 68 f~e~vi~p~i~aNa~y~G~yPl~~~nR~~~~~~l~e~A~~~G~~~IA~G~tgk 120 (400)
T PRK04527 68 IWEGFVKPLVWAGEGYQGQYPLLVSDRYLIVDAALKRAEELGTRIIAHGCTGM 120 (400)
T ss_pred HHHHHHHHHHhcchhhcCCCCCccccHHHHHHHHHHHHHHCCCCEEEecCcCC
Confidence 00111 112456899999999999999999854
No 137
>PF13727 CoA_binding_3: CoA-binding domain; PDB: 3NKL_B.
Probab=48.95 E-value=21 Score=27.46 Aligned_cols=44 Identities=18% Similarity=0.207 Sum_probs=25.9
Q ss_pred HHHHHHHHHHcCCcEEEEcccCCCCCCchHHHH--HhcCCCcEEEEc
Q 028129 168 TAIIGDVADELNLDLVIISMEAIHSKHVDANLL--AEFIPCPVLLLP 212 (213)
Q Consensus 168 ~~~Il~~A~e~~aDLIVmG~~g~~~~Gs~~~~v--l~~a~cPVLvVp 212 (213)
.+.+.++++++++|.|++.-... ........+ +++.+|.|-+||
T Consensus 130 ~~~l~~~~~~~~id~v~ial~~~-~~~~i~~ii~~~~~~~v~v~~vP 175 (175)
T PF13727_consen 130 LDDLPELVREHDIDEVIIALPWS-EEEQIKRIIEELENHGVRVRVVP 175 (175)
T ss_dssp GGGHHHHHHHHT--EEEE--TTS--HHHHHHHHHHHHTTT-EEEE--
T ss_pred HHHHHHHHHhCCCCEEEEEcCcc-CHHHHHHHHHHHHhCCCEEEEeC
Confidence 47899999999999999987543 112222222 899999999887
No 138
>COG0615 TagD Cytidylyltransferase [Cell envelope biogenesis, outer membrane / Lipid metabolism]
Probab=48.87 E-value=34 Score=26.88 Aligned_cols=33 Identities=18% Similarity=0.264 Sum_probs=24.3
Q ss_pred EEEEEcccCCchHHHHHHHHHHcCCcEEEEcccCC
Q 028129 156 LLERLGEGSSKPTAIIGDVADELNLDLVIISMEAI 190 (213)
Q Consensus 156 v~~~v~~G~~~p~~~Il~~A~e~~aDLIVmG~~g~ 190 (213)
+...++.|. |.+.=.+..+++++|.|+||---.
T Consensus 65 yVD~vi~~~--p~~~~~~~i~~~k~Div~lG~D~~ 97 (140)
T COG0615 65 YVDEVILGA--PWDIKFEDIEEYKPDIVVLGDDQK 97 (140)
T ss_pred chheeeeCC--ccccChHHHHHhCCCEEEECCCCc
Confidence 333555675 665558889999999999998544
No 139
>COG1058 CinA Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only]
Probab=48.75 E-value=86 Score=27.09 Aligned_cols=65 Identities=23% Similarity=0.196 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHhCCCCceeEEEEEcccCCchHHHH---HHHHHHcCCcEEEEc-ccCCCCCCchHHHHHhcCCCc
Q 028129 137 NRLSSIRWHLSEGGFQEFRLLERLGEGSSKPTAII---GDVADELNLDLVIIS-MEAIHSKHVDANLLAEFIPCP 207 (213)
Q Consensus 137 ~~l~~~~~~l~~~g~~~~~v~~~v~~G~~~p~~~I---l~~A~e~~aDLIVmG-~~g~~~~Gs~~~~vl~~a~cP 207 (213)
.+...+.+.+.+.|++ +......|| ++ +.| ++.+.+. +|+||.. .=|......+..-+++....|
T Consensus 21 tNa~~la~~L~~~G~~---v~~~~~VgD-~~-~~I~~~l~~a~~r-~D~vI~tGGLGPT~DDiT~e~vAka~g~~ 89 (255)
T COG1058 21 TNAAFLADELTELGVD---LARITTVGD-NP-DRIVEALREASER-ADVVITTGGLGPTHDDLTAEAVAKALGRP 89 (255)
T ss_pred chHHHHHHHHHhcCce---EEEEEecCC-CH-HHHHHHHHHHHhC-CCEEEECCCcCCCccHhHHHHHHHHhCCC
Confidence 3345556678888999 777767787 44 344 3456666 9999983 334322355666555554444
No 140
>COG1454 EutG Alcohol dehydrogenase, class IV [Energy production and conversion]
Probab=48.52 E-value=1.9e+02 Score=26.42 Aligned_cols=82 Identities=18% Similarity=0.140 Sum_probs=45.5
Q ss_pred CCcEEEEeeCCCCCCCHHHHHHHHHHHHHHhhcCCEEEEEEEeCCCCCChhhHHHHHHHHHHHHHhCCCCceeEEEE-Ec
Q 028129 83 FKHLLLPITDQNPYLSEGTRQAAATTAALAKKYGADITVVVIDERQKESLPEHENRLSSIRWHLSEGGFQEFRLLER-LG 161 (213)
Q Consensus 83 ~k~ILV~vD~~~~~~S~~s~~Al~~A~~LA~~~~a~L~ll~V~~~~~~~~~~~~~~l~~~~~~l~~~g~~~~~v~~~-v~ 161 (213)
..+|++..+ ++++........|.+=.+++.+.... ....++.+.+.+.+.+++ +... -+
T Consensus 7 p~~i~fG~g------------~l~~l~~~~~~~g~~r~liVTd~~~~-----~~g~~~~v~~~L~~~~i~---~~if~~v 66 (377)
T COG1454 7 PTEILFGRG------------SLKELGEEVKRLGAKRALIVTDRGLA-----KLGLLDKVLDSLDAAGIE---YEVFDEV 66 (377)
T ss_pred CceEEecCC------------hHHHHHHHHHhcCCCceEEEECCccc-----cchhHHHHHHHHHhcCCe---EEEecCC
Confidence 455666665 45555566666665555555555421 124456666777777765 3222 12
Q ss_pred ccCCchH---HHHHHHHHHcCCcEEEE
Q 028129 162 EGSSKPT---AIIGDVADELNLDLVII 185 (213)
Q Consensus 162 ~G~~~p~---~~Il~~A~e~~aDLIVm 185 (213)
.++ .+. +...+.+++.++|.||-
T Consensus 67 ~p~-P~~~~v~~~~~~~~~~~~D~iIa 92 (377)
T COG1454 67 EPE-PTIETVEAGAEVAREFGPDTIIA 92 (377)
T ss_pred CCC-CCHHHHHHHHHHHHhcCCCEEEE
Confidence 333 222 33346778888888875
No 141
>PRK13057 putative lipid kinase; Reviewed
Probab=47.45 E-value=1.1e+02 Score=26.16 Aligned_cols=65 Identities=22% Similarity=0.223 Sum_probs=31.5
Q ss_pred HHHHHHHHHhCCCCceeEEEEEcccCCchHHHHHHHHHHcCCcEEEEcccCCCCCCchHHHH--HhcCCCcEEEEc
Q 028129 139 LSSIRWHLSEGGFQEFRLLERLGEGSSKPTAIIGDVADELNLDLVIISMEAIHSKHVDANLL--AEFIPCPVLLLP 212 (213)
Q Consensus 139 l~~~~~~l~~~g~~~~~v~~~v~~G~~~p~~~Il~~A~e~~aDLIVmG~~g~~~~Gs~~~~v--l~~a~cPVLvVp 212 (213)
.+++.+.+.+.|++ +.....+.. .-+..+.+.+ +.++|+||+.. | .|.....+ +...++|+.++|
T Consensus 15 ~~~i~~~l~~~g~~---~~~~~t~~~-~~a~~~~~~~-~~~~d~iiv~G-G---DGTv~~v~~~l~~~~~~lgiiP 81 (287)
T PRK13057 15 LAAARAALEAAGLE---LVEPPAEDP-DDLSEVIEAY-ADGVDLVIVGG-G---DGTLNAAAPALVETGLPLGILP 81 (287)
T ss_pred HHHHHHHHHHcCCe---EEEEecCCH-HHHHHHHHHH-HcCCCEEEEEC-c---hHHHHHHHHHHhcCCCcEEEEC
Confidence 44555566666766 443332221 1233444432 34567666532 1 24443333 344567777776
No 142
>PRK12755 phospho-2-dehydro-3-deoxyheptonate aldolase; Provisional
Probab=47.30 E-value=1.5e+02 Score=26.93 Aligned_cols=112 Identities=18% Similarity=0.168 Sum_probs=61.3
Q ss_pred CcEEEEeeCCCCCCCHHHHHHHHHHHHHHhh---cCCEEE-EEEE--eCCC----CCCh---h------hHHHHHHHHHH
Q 028129 84 KHLLLPITDQNPYLSEGTRQAAATTAALAKK---YGADIT-VVVI--DERQ----KESL---P------EHENRLSSIRW 144 (213)
Q Consensus 84 k~ILV~vD~~~~~~S~~s~~Al~~A~~LA~~---~~a~L~-ll~V--~~~~----~~~~---~------~~~~~l~~~~~ 144 (213)
++.||-+.+- .-+.-+.+++||.+|... +..++. ++-+ +++. +.++ | +.++-+.-+++
T Consensus 53 ~rllvI~GPC---SI~d~~~aleyA~~Lk~l~~~~~d~l~ivmR~y~eKPRT~~gwkGli~DP~ldgs~~i~~GL~~~R~ 129 (353)
T PRK12755 53 DRLLVVVGPC---SIHDPEAALEYARRLKALADELSDRLLIVMRVYFEKPRTTVGWKGLINDPHLDGSFDIEEGLRIARK 129 (353)
T ss_pred CCeEEEeCCC---CCCCHHHHHHHHHHHHHHHhhhhcceEEEEEeccccCCCCcCCcCCCCCccccccccHHHHHHHHHH
Confidence 4556666641 234566789999887654 233454 3322 2221 1111 1 22333443333
Q ss_pred H---HHhCCCCceeEEEEEcccCCchHHHHHHHHHHcCCcEEEEcccCCCCCCchHHHHHhcCCCcEEE
Q 028129 145 H---LSEGGFQEFRLLERLGEGSSKPTAIIGDVADELNLDLVIISMEAIHSKHVDANLLAEFIPCPVLL 210 (213)
Q Consensus 145 ~---l~~~g~~~~~v~~~v~~G~~~p~~~Il~~A~e~~aDLIVmG~~g~~~~Gs~~~~vl~~a~cPVLv 210 (213)
. ..+.|+. +...+..- ...+|..++ +|++-+|+|.. ..-....++....|||.+
T Consensus 130 ll~~~~e~Glp---~atE~ld~------~~~~y~~Dl-vs~~aIGARt~--esq~hre~aSgl~~PVgf 186 (353)
T PRK12755 130 LLLDLVELGLP---LATEALDP------ISPQYLGDL-ISWGAIGARTT--ESQTHREMASGLSMPVGF 186 (353)
T ss_pred HHHHHHHhCCC---EEEEecCc------ccHHHHHhh-hhheeeccchh--cCHHHHHHhcCCCCeeEe
Confidence 3 4566787 66655322 244555554 78899999864 333444568888899875
No 143
>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=46.97 E-value=1.9e+02 Score=27.68 Aligned_cols=92 Identities=12% Similarity=0.070 Sum_probs=56.2
Q ss_pred cCCCcEEEEeeCCCCCCCHHHHHHHHHHHHHHhhcCCEEEEEEEeCCCCCChhhHHHHHHHHHHH---------HHhCCC
Q 028129 81 TNFKHLLLPITDQNPYLSEGTRQAAATTAALAKKYGADITVVVIDERQKESLPEHENRLSSIRWH---------LSEGGF 151 (213)
Q Consensus 81 ~~~k~ILV~vD~~~~~~S~~s~~Al~~A~~LA~~~~a~L~ll~V~~~~~~~~~~~~~~l~~~~~~---------l~~~g~ 151 (213)
.+|--..++++ |-..+......|.||-. .+-++.+...+....... |+..-+++.. +-+.|+
T Consensus 377 rPYVi~fvGVN-----GVGKSTNLAKIayWLlq-NkfrVLIAACDTFRsGAv---EQLrtHv~rl~~l~~~~v~lfekGY 447 (587)
T KOG0781|consen 377 RPYVISFVGVN-----GVGKSTNLAKIAYWLLQ-NKFRVLIAACDTFRSGAV---EQLRTHVERLSALHGTMVELFEKGY 447 (587)
T ss_pred CCeEEEEEeec-----CccccchHHHHHHHHHh-CCceEEEEeccchhhhHH---HHHHHHHHHHHHhccchhHHHhhhc
Confidence 55777788888 88888889999999875 455555555554332222 2222222221 112222
Q ss_pred CceeEEEEEcccCCchHHHHHHHHHHcCCcEEEEcccCC
Q 028129 152 QEFRLLERLGEGSSKPTAIIGDVADELNLDLVIISMEAI 190 (213)
Q Consensus 152 ~~~~v~~~v~~G~~~p~~~Il~~A~e~~aDLIVmG~~g~ 190 (213)
. -. .. .++..-++||+.++.|.|.|-+-||
T Consensus 448 g---kd---~a---~vak~AI~~a~~~gfDVvLiDTAGR 477 (587)
T KOG0781|consen 448 G---KD---AA---GVAKEAIQEARNQGFDVVLIDTAGR 477 (587)
T ss_pred C---CC---hH---HHHHHHHHHHHhcCCCEEEEecccc
Confidence 2 11 01 2567778899999999999988776
No 144
>KOG1466 consensus Translation initiation factor 2B, alpha subunit (eIF-2Balpha/GCN3) [Translation, ribosomal structure and biogenesis]
Probab=46.76 E-value=2e+02 Score=25.23 Aligned_cols=84 Identities=18% Similarity=0.163 Sum_probs=47.0
Q ss_pred HHHHhhcCCEEEEEEEeCCCCCChhhHHHHHHHHHHHHHhCCCCceeEEEEEcccCCchHHHHHHHHHHcCCcEEEEccc
Q 028129 109 AALAKKYGADITVVVIDERQKESLPEHENRLSSIRWHLSEGGFQEFRLLERLGEGSSKPTAIIGDVADELNLDLVIISME 188 (213)
Q Consensus 109 ~~LA~~~~a~L~ll~V~~~~~~~~~~~~~~l~~~~~~l~~~g~~~~~v~~~v~~G~~~p~~~Il~~A~e~~aDLIVmG~~ 188 (213)
+.-|.+.+-++++++....+..+ -..+.+.+...|+. +...+ +.-+.|.-+ .+|++++|+.
T Consensus 147 L~~Aa~~~~~F~V~vTEsrPd~s-------G~lm~~~L~~~~IP---vtlvl--------DSaVgyvMe-~vD~VlVGAE 207 (313)
T KOG1466|consen 147 LLTAAQNKKRFRVYVTESRPDGS-------GKLMAKELKKLGIP---VTLVL--------DSAVGYVME-RVDLVLVGAE 207 (313)
T ss_pred HHHHHhcCceEEEEEecCCCCCc-------hhHHHHHHHhcCCC---eEEEe--------hhhHHHHHh-hccEEEEccc
Confidence 33344556677776554332111 12233456777988 55433 112223322 5999999998
Q ss_pred CCCCC-Cc------hH-HHHHhcCCCcEEEE
Q 028129 189 AIHSK-HV------DA-NLLAEFIPCPVLLL 211 (213)
Q Consensus 189 g~~~~-Gs------~~-~~vl~~a~cPVLvV 211 (213)
|--.+ |+ .. ..++++.+.|+.++
T Consensus 208 GVvEsGGIIN~iGTyq~~v~Ak~~~kPfYV~ 238 (313)
T KOG1466|consen 208 GVVESGGIINKIGTYQVAVCAKSMNKPFYVV 238 (313)
T ss_pred eeeecCceeeecccchhhhhHHhcCCCeEEE
Confidence 75333 32 22 23489999999886
No 145
>PRK13964 coaD phosphopantetheine adenylyltransferase; Provisional
Probab=46.66 E-value=1.4e+02 Score=23.27 Aligned_cols=81 Identities=16% Similarity=0.269 Sum_probs=44.5
Q ss_pred CCHHHHHHHHHHHHHHhhcCCEEEEEEEeCCCCCChhhHHHHHHHHHHHHHhCCCCceeEEEEEcccCCchHHHHHHHHH
Q 028129 97 LSEGTRQAAATTAALAKKYGADITVVVIDERQKESLPEHENRLSSIRWHLSEGGFQEFRLLERLGEGSSKPTAIIGDVAD 176 (213)
Q Consensus 97 ~S~~s~~Al~~A~~LA~~~~a~L~ll~V~~~~~~~~~~~~~~l~~~~~~l~~~g~~~~~v~~~v~~G~~~p~~~Il~~A~ 176 (213)
....-...++.|..+. .++.++....+.....-..+++++.++.... ++++ ++.... ...-++++|+
T Consensus 13 ih~GHl~ii~~A~~~~----D~v~v~v~~np~K~~~~s~e~R~~~l~~~~~--~~~~--v~v~~~-----~~~l~v~~~~ 79 (140)
T PRK13964 13 FHKGHLNILKKALKLF----DKVYVVVSINPDKSNASDLDSRFKNVKNKLK--DFKN--VEVLIN-----ENKLTAEIAK 79 (140)
T ss_pred CCHHHHHHHHHHHHhC----CEEEEEeccCCCCCCCCCHHHHHHHHHHHHc--CCCC--cEEecC-----cCCcHHHHHH
Confidence 4555566777776663 4676664433322211123444444443332 2332 222111 1135688999
Q ss_pred HcCCcEEEEcccCC
Q 028129 177 ELNLDLVIISMEAI 190 (213)
Q Consensus 177 e~~aDLIVmG~~g~ 190 (213)
+++++.||-|-|..
T Consensus 80 ~~~a~~ivrGlR~~ 93 (140)
T PRK13964 80 KLGANFLIRSARNN 93 (140)
T ss_pred HCCCeEEEEecCCC
Confidence 99999999999975
No 146
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=45.70 E-value=1e+02 Score=21.85 Aligned_cols=66 Identities=17% Similarity=0.157 Sum_probs=35.0
Q ss_pred HHHHHHHHHhCCCCceeEEEEE-cccCCchH-HHHHHHHHHcCCcEEEEcccCCCCCCchHHH---HHhcCCCcEEEEc
Q 028129 139 LSSIRWHLSEGGFQEFRLLERL-GEGSSKPT-AIIGDVADELNLDLVIISMEAIHSKHVDANL---LAEFIPCPVLLLP 212 (213)
Q Consensus 139 l~~~~~~l~~~g~~~~~v~~~v-~~G~~~p~-~~Il~~A~e~~aDLIVmG~~g~~~~Gs~~~~---vl~~a~cPVLvVp 212 (213)
...++..+++.|.+ ...+- ..|. ... ..|-.... ++|+||+-+.-- +...... .+++...|++.++
T Consensus 12 ~~~~~~~~~~~G~~---~~~hg~~~~~-~~~~~~l~~~i~--~aD~VIv~t~~v--sH~~~~~vk~~akk~~ip~~~~~ 82 (97)
T PF10087_consen 12 ERRYKRILEKYGGK---LIHHGRDGGD-EKKASRLPSKIK--KADLVIVFTDYV--SHNAMWKVKKAAKKYGIPIIYSR 82 (97)
T ss_pred HHHHHHHHHHcCCE---EEEEecCCCC-ccchhHHHHhcC--CCCEEEEEeCCc--ChHHHHHHHHHHHHcCCcEEEEC
Confidence 34555566667776 44331 1222 122 22444443 489998877543 3222222 3777778887764
No 147
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=45.44 E-value=2.6e+02 Score=26.05 Aligned_cols=81 Identities=12% Similarity=0.109 Sum_probs=48.6
Q ss_pred CCHHHHHHHHHHHHHHhhcCCEEEEEEEeCCCCCChhhHHHHHHHHHHHHHhCCCCceeEEEEEcccCCchHH---HHHH
Q 028129 97 LSEGTRQAAATTAALAKKYGADITVVVIDERQKESLPEHENRLSSIRWHLSEGGFQEFRLLERLGEGSSKPTA---IIGD 173 (213)
Q Consensus 97 ~S~~s~~Al~~A~~LA~~~~a~L~ll~V~~~~~~~~~~~~~~l~~~~~~l~~~g~~~~~v~~~v~~G~~~p~~---~Il~ 173 (213)
|+..+.-+...|..+.+ .|.++.++..+.... ...+.++......++. +... ..+. +|.. .-++
T Consensus 110 GvGKTTtaaKLA~~l~~-~G~kV~lV~~D~~R~-------aA~eQLk~~a~~~~vp---~~~~-~~~~-dp~~i~~~~l~ 176 (429)
T TIGR01425 110 GSGKTTTCTKLAYYYQR-KGFKPCLVCADTFRA-------GAFDQLKQNATKARIP---FYGS-YTES-DPVKIASEGVE 176 (429)
T ss_pred CCCHHHHHHHHHHHHHH-CCCCEEEEcCcccch-------hHHHHHHHHhhccCCe---EEee-cCCC-CHHHHHHHHHH
Confidence 88888889999987764 466777776664221 1122222223334555 4322 2233 4543 3455
Q ss_pred HHHHcCCcEEEEcccCC
Q 028129 174 VADELNLDLVIISMEAI 190 (213)
Q Consensus 174 ~A~e~~aDLIVmG~~g~ 190 (213)
.+++.++|+|++=+.|+
T Consensus 177 ~~~~~~~DvViIDTaGr 193 (429)
T TIGR01425 177 KFKKENFDIIIVDTSGR 193 (429)
T ss_pred HHHhCCCCEEEEECCCC
Confidence 66667899999999887
No 148
>cd08550 GlyDH-like Glycerol_dehydrogenase-like. Families of proteins related to glycerol dehydrogenases. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site. Some subfamilies have not been characterized till now.
Probab=45.11 E-value=2.2e+02 Score=25.18 Aligned_cols=16 Identities=25% Similarity=0.142 Sum_probs=9.4
Q ss_pred HHHHHHHHHcCCcEEE
Q 028129 169 AIIGDVADELNLDLVI 184 (213)
Q Consensus 169 ~~Il~~A~e~~aDLIV 184 (213)
+.+.+.+++.++|.||
T Consensus 67 ~~~~~~~~~~~~d~II 82 (349)
T cd08550 67 VKALCGAEEQEADVII 82 (349)
T ss_pred HHHHHHHHhcCCCEEE
Confidence 3455556666666655
No 149
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=44.92 E-value=51 Score=27.28 Aligned_cols=114 Identities=19% Similarity=0.237 Sum_probs=56.9
Q ss_pred cCcchhhhhhhhccc-CCCCCcccchhh-----hhhcCCCcEEEEeeCCCCCCCHHHHHHHHHHHHHHhhcCCEEEEEEE
Q 028129 51 LSLFPRFRRIGHKAK-VKSPESEINSVA-----EAFTNFKHLLLPITDQNPYLSEGTRQAAATTAALAKKYGADITVVVI 124 (213)
Q Consensus 51 ~~~~~~~~r~~~~a~-~~~~~~~~~~~~-----~~~~~~k~ILV~vD~~~~~~S~~s~~Al~~A~~LA~~~~a~L~ll~V 124 (213)
+.....+|+++.+.. -+.+.+.....+ ......++||--= +-..-.++..|..+. .+++++.+-.
T Consensus 8 ~~~l~~l~~~t~~~~~~~~~~i~~~~g~lL~~l~~~~~~k~vLEIG-------t~~GySal~la~~l~--~~g~i~tiE~ 78 (205)
T PF01596_consen 8 PELLKELREFTRENQGLPQMSISPETGQLLQMLVRLTRPKRVLEIG-------TFTGYSALWLAEALP--EDGKITTIEI 78 (205)
T ss_dssp THHHHHHHHHHHCTTTTGGGSHHHHHHHHHHHHHHHHT-SEEEEES-------TTTSHHHHHHHHTST--TTSEEEEEES
T ss_pred CHHHHHHHHHHHhCcCCCCCccCHHHHHHHHHHHHhcCCceEEEec-------cccccHHHHHHHhhc--ccceEEEecC
Confidence 346667777776654 222222221111 1123456665332 223334444443332 2555544433
Q ss_pred eCCCCCChhhHHHHHHHHHHHHHhCCCCceeEEEEEcccCCchHHHHHHHHHHc---CCcEEEEccc
Q 028129 125 DERQKESLPEHENRLSSIRWHLSEGGFQEFRLLERLGEGSSKPTAIIGDVADEL---NLDLVIISME 188 (213)
Q Consensus 125 ~~~~~~~~~~~~~~l~~~~~~l~~~g~~~~~v~~~v~~G~~~p~~~Il~~A~e~---~aDLIVmG~~ 188 (213)
++ +..+.+++.+...|+.+ .+. +..|+ ..+.|-+...+. .+|+|.+-+.
T Consensus 79 ~~----------~~~~~A~~~~~~ag~~~-~I~--~~~gd--a~~~l~~l~~~~~~~~fD~VFiDa~ 130 (205)
T PF01596_consen 79 DP----------ERAEIARENFRKAGLDD-RIE--VIEGD--ALEVLPELANDGEEGQFDFVFIDAD 130 (205)
T ss_dssp SH----------HHHHHHHHHHHHTTGGG-GEE--EEES---HHHHHHHHHHTTTTTSEEEEEEEST
T ss_pred cH----------HHHHHHHHHHHhcCCCC-cEE--EEEec--cHhhHHHHHhccCCCceeEEEEccc
Confidence 22 33445556677777751 244 44585 777777777655 5999999764
No 150
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=44.84 E-value=2e+02 Score=24.65 Aligned_cols=118 Identities=17% Similarity=0.204 Sum_probs=57.3
Q ss_pred EEEEeeCCCCCCCHHHHHHHHHHHHHHhhcCCEEEEE--EEeCCCCCChhhHHHHHHHHHHHHHhCCCCceeEEEEEccc
Q 028129 86 LLLPITDQNPYLSEGTRQAAATTAALAKKYGADITVV--VIDERQKESLPEHENRLSSIRWHLSEGGFQEFRLLERLGEG 163 (213)
Q Consensus 86 ILV~vD~~~~~~S~~s~~Al~~A~~LA~~~~a~L~ll--~V~~~~~~~~~~~~~~l~~~~~~l~~~g~~~~~v~~~v~~G 163 (213)
++.|+|++ + +-..++++.-++.....|.+=.++ ...+....+.++-.+.++.+.+.. ...+. +...+...
T Consensus 9 ~~TPf~~d---g-~iD~~~l~~~i~~l~~~Gv~gi~~~Gs~GE~~~ls~~Er~~~~~~~~~~~-~~~~~---vi~gv~~~ 80 (292)
T PRK03170 9 LVTPFKED---G-SVDFAALRKLVDYLIANGTDGLVVVGTTGESPTLTHEEHEELIRAVVEAV-NGRVP---VIAGTGSN 80 (292)
T ss_pred eeCCcCCC---C-CcCHHHHHHHHHHHHHcCCCEEEECCcCCccccCCHHHHHHHHHHHHHHh-CCCCc---EEeecCCc
Confidence 44555531 2 334455555555444455443333 233322222233334444444332 22234 44434322
Q ss_pred CCchHHHHHHHHHHcCCcEEEEcccCCCCC---CchHHH--HHhcCCCcEEEE
Q 028129 164 SSKPTAIIGDVADELNLDLVIISMEAIHSK---HVDANL--LAEFIPCPVLLL 211 (213)
Q Consensus 164 ~~~p~~~Il~~A~e~~aDLIVmG~~g~~~~---Gs~~~~--vl~~a~cPVLvV 211 (213)
...-..+..+.|++.++|-|++........ +....+ ++..++.||++-
T Consensus 81 ~~~~~i~~a~~a~~~G~d~v~~~pP~~~~~~~~~i~~~~~~ia~~~~~pv~lY 133 (292)
T PRK03170 81 STAEAIELTKFAEKAGADGALVVTPYYNKPTQEGLYQHFKAIAEATDLPIILY 133 (292)
T ss_pred hHHHHHHHHHHHHHcCCCEEEECCCcCCCCCHHHHHHHHHHHHhcCCCCEEEE
Confidence 213345556888999999999877543111 222222 377788999875
No 151
>cd08192 Fe-ADH7 Iron-containing alcohol dehydrogenases-like, involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. NAD-dependent iron-containing alcohol dehydrogenase-like. Proteins in this family are NAD-dependent alcohol dehydrogenases which are involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. They catalyze the oxidation of beta-hydroxy CoA ester to beta-oxo CoA ester, which then be subject to CoA-dependent thiolysis to yield acetyl-CoA and 6-C8-SPC-CoA. The major laundry surfactant in worldwide use is commercial linear alkylbenzenesulfonate (LAS) which contains 20 congeners of linear alkanes (C10 to C13). LAS is fully biodegradable in oxic environments. Degradation involves microbial communities. Parvibaculum lavamentivorans DS-1T is a representative member of many heterotrophic, LAS-degrading communities, in which it catalyzes the first steps of LAS degradation. Strain DS-1T is a small heterotrophic bacterium able to omega-oxygenate the comm
Probab=44.82 E-value=1.4e+02 Score=26.62 Aligned_cols=46 Identities=11% Similarity=-0.107 Sum_probs=26.0
Q ss_pred HHHHHHHHHhCCCCceeEEEEE-cccC--CchHHHHHHHHHHcCCcEEE-Ecc
Q 028129 139 LSSIRWHLSEGGFQEFRLLERL-GEGS--SKPTAIIGDVADELNLDLVI-ISM 187 (213)
Q Consensus 139 l~~~~~~l~~~g~~~~~v~~~v-~~G~--~~p~~~Il~~A~e~~aDLIV-mG~ 187 (213)
.+++.+.+.+.|++ +.... ..++ .+-.+.+++.+++.++|.|| +|.
T Consensus 41 ~~~v~~~L~~~g~~---~~~~~~v~~~p~~~~v~~~~~~~~~~~~d~IIaiGG 90 (370)
T cd08192 41 VARVLALLEDAGLA---AALFDEVPPNPTEAAVEAGLAAYRAGGCDGVIAFGG 90 (370)
T ss_pred HHHHHHHHHHcCCe---EEEeCCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 44555666666766 33221 2222 01235566777888999988 554
No 152
>cd00578 L-fuc_L-ara-isomerases L-fucose isomerase (FucIase) and L-arabinose isomerase (AI) family; composed of FucIase, AI and similar proteins. FucIase converts L-fucose, an aldohexose, to its ketose form, which prepares it for aldol cleavage (similar to the isomerization of glucose in glycolysis). L-fucose (or 6-deoxy-L-galactose) is found in various oligo- and polysaccharides in mammals, bacteria and plants. AI catalyzes the isomerization of L-arabinose to L-ribulose, the first reaction in its conversion to D-xylulose-5-phosphate, an intermediate in the pentose phosphate pathway, which allows L-arabinose to be used as a carbon source. AI can also convert D-galactose to D-tagatose at elevated temperatures in the presence of divalent metal ions. D-tagatose, rarely found in nature, is of commercial interest as a low-calorie sugar substitute.
Probab=44.45 E-value=1.1e+02 Score=28.30 Aligned_cols=18 Identities=28% Similarity=0.246 Sum_probs=8.5
Q ss_pred HHHHHHHHcCCcEEEEcc
Q 028129 170 IIGDVADELNLDLVIISM 187 (213)
Q Consensus 170 ~Il~~A~e~~aDLIVmG~ 187 (213)
.+.+.+++.++|.||+-.
T Consensus 54 ~~~~~~~~~~~d~ii~~~ 71 (452)
T cd00578 54 KAAEEFNEANCDGLIVWM 71 (452)
T ss_pred HHHHHHhhcCCcEEEEcc
Confidence 333444444555555543
No 153
>PRK09468 ompR osmolarity response regulator; Provisional
Probab=44.25 E-value=1.6e+02 Score=23.46 Aligned_cols=42 Identities=10% Similarity=0.201 Sum_probs=19.7
Q ss_pred HHHHHHHHcCCcEEEEcccCCCCCCchHHHHHhc--CCCcEEEE
Q 028129 170 IIGDVADELNLDLVIISMEAIHSKHVDANLLAEF--IPCPVLLL 211 (213)
Q Consensus 170 ~Il~~A~e~~aDLIVmG~~g~~~~Gs~~~~vl~~--a~cPVLvV 211 (213)
...+.....++|+|++...-....|......++. ..+|++++
T Consensus 40 ~~~~~~~~~~~dlvild~~l~~~~g~~~~~~lr~~~~~~pii~l 83 (239)
T PRK09468 40 QMDRLLTRESFHLMVLDLMLPGEDGLSICRRLRSQNNPTPIIML 83 (239)
T ss_pred HHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCCEEEE
Confidence 3444445556777777654321133333322332 34666654
No 154
>TIGR03010 sulf_tusC_dsrF sulfur relay protein TusC/DsrF. The three proteins TusB, TusC, and TusD form a heterohexamer responsible for a sulfur relay reaction. In large numbers of proteobacterial species, this complex acts on a Cys-derived persulfide moiety, delivered by the cysteine desulfurase IscS to TusA, then to TusBCD. The activated sulfur group is then transferred to TusE (DsrC), then by MnmA (TrmU) for modification of an anticodon nucleotide in tRNAs for Glu, Lys, and Gln. The sulfur relay complex TusBCD is also found, under the designation DsrEFH, in phototrophic and chemotrophic sulfur bacteria, such as Chromatium vinosum. In these organisms, it seems the primary purpose is related to sulfur flux, such as oxidation from sulfide to molecular sulfur to sulfate.
Probab=44.10 E-value=64 Score=23.90 Aligned_cols=39 Identities=26% Similarity=0.353 Sum_probs=29.3
Q ss_pred EEEEeeCCCCCCCHHHHHHHHHHHHHHhhcCCEEEEEEEeC
Q 028129 86 LLLPITDQNPYLSEGTRQAAATTAALAKKYGADITVVVIDE 126 (213)
Q Consensus 86 ILV~vD~~~~~~S~~s~~Al~~A~~LA~~~~a~L~ll~V~~ 126 (213)
|++-+. ..||+++.+.++++.|..++. ++.++.++...+
T Consensus 2 il~i~~-~~Pyg~~~~~e~l~~al~~aa-~~~eV~vff~~D 40 (116)
T TIGR03010 2 LAFVFR-QAPHGTASGREGLDALLAASA-FDEDIGVFFIDD 40 (116)
T ss_pred EEEEEc-CCCCCcchHHHHHHHHHHHHh-ccCCeEEEEech
Confidence 555555 368999999999999999775 456787775544
No 155
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=43.64 E-value=78 Score=23.10 Aligned_cols=39 Identities=28% Similarity=0.380 Sum_probs=24.0
Q ss_pred HHHHhCCCCceeEEEEEcccCCchHHHHHHHHHHcCCcEEEEccc
Q 028129 144 WHLSEGGFQEFRLLERLGEGSSKPTAIIGDVADELNLDLVIISME 188 (213)
Q Consensus 144 ~~l~~~g~~~~~v~~~v~~G~~~p~~~Il~~A~e~~aDLIVmG~~ 188 (213)
..++..|++ +. .+. .. -+.+++++.+.+.++|+|++...
T Consensus 21 ~~l~~~G~~---V~-~lg-~~-~~~~~l~~~~~~~~pdvV~iS~~ 59 (119)
T cd02067 21 RALRDAGFE---VI-DLG-VD-VPPEEIVEAAKEEDADAIGLSGL 59 (119)
T ss_pred HHHHHCCCE---EE-ECC-CC-CCHHHHHHHHHHcCCCEEEEecc
Confidence 345566766 43 221 22 46677777777777777777664
No 156
>PRK00861 putative lipid kinase; Reviewed
Probab=43.46 E-value=1.8e+02 Score=24.95 Aligned_cols=18 Identities=22% Similarity=0.241 Sum_probs=9.5
Q ss_pred HHHHHHHHHHcCCcEEEE
Q 028129 168 TAIIGDVADELNLDLVII 185 (213)
Q Consensus 168 ~~~Il~~A~e~~aDLIVm 185 (213)
+.++.+.+.+.+.|+||+
T Consensus 46 a~~~a~~~~~~~~d~vv~ 63 (300)
T PRK00861 46 ADQLAQEAIERGAELIIA 63 (300)
T ss_pred HHHHHHHHHhcCCCEEEE
Confidence 445555554555665544
No 157
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=43.44 E-value=1.7e+02 Score=25.08 Aligned_cols=63 Identities=16% Similarity=0.188 Sum_probs=37.1
Q ss_pred HHHhCCCCceeEEEEEcccCCchHHHHHHHHHHcCCcEEEEcccCCCCCCchHHHH--HhcCCCcEEEEc
Q 028129 145 HLSEGGFQEFRLLERLGEGSSKPTAIIGDVADELNLDLVIISMEAIHSKHVDANLL--AEFIPCPVLLLP 212 (213)
Q Consensus 145 ~l~~~g~~~~~v~~~v~~G~~~p~~~Il~~A~e~~aDLIVmG~~g~~~~Gs~~~~v--l~~a~cPVLvVp 212 (213)
...+.|+..-++. ...|. --.+.=...-+++++|.||.=..|. .|-....+ +++..+||++|+
T Consensus 166 ~~~~~G~~~~~ii--a~~gP-fs~e~n~al~~~~~i~~lVtK~SG~--~Gg~~eKi~AA~~lgi~vivI~ 230 (256)
T TIGR00715 166 QALKLGFPSDRII--AMRGP-FSEELEKALLREYRIDAVVTKASGE--QGGELEKVKAAEALGINVIRIA 230 (256)
T ss_pred HHHHcCCChhcEE--EEeCC-CCHHHHHHHHHHcCCCEEEEcCCCC--ccchHHHHHHHHHcCCcEEEEe
Confidence 3445566633332 23454 1123334566788888888866665 44444444 788888888875
No 158
>PRK00109 Holliday junction resolvase-like protein; Reviewed
Probab=43.19 E-value=80 Score=24.39 Aligned_cols=44 Identities=14% Similarity=0.166 Sum_probs=29.6
Q ss_pred hHHHHHHHHHHcCCcEEEEcccCCCCCCch---HH-------HHHhcCCCcEEEE
Q 028129 167 PTAIIGDVADELNLDLVIISMEAIHSKHVD---AN-------LLAEFIPCPVLLL 211 (213)
Q Consensus 167 p~~~Il~~A~e~~aDLIVmG~~g~~~~Gs~---~~-------~vl~~a~cPVLvV 211 (213)
..+.|.+++++++++.||+|-.-. ..|.. +. .+.++.++||..+
T Consensus 42 ~~~~l~~~i~~~~i~~iVvGlP~~-~~G~~~~~~~~v~~f~~~L~~~~~~~v~~~ 95 (138)
T PRK00109 42 DWDRLEKLIKEWQPDGLVVGLPLN-MDGTEGPRTERARKFANRLEGRFGLPVVLV 95 (138)
T ss_pred HHHHHHHHHHHhCCCEEEEeccCC-CCCCcCHHHHHHHHHHHHHHHHhCCCEEEE
Confidence 478999999999999999997532 12222 11 2234457888765
No 159
>PF03652 UPF0081: Uncharacterised protein family (UPF0081); InterPro: IPR005227 Holliday junction resolvases (HJRs) are key enzymes of DNA recombination. The principal HJRs are now known or confidently predicted for all bacteria and archaea whose genomes have been completely sequenced, with many species encoding multiple potential HJRs. Structural and evolutionary relationships of HJRs and related nucleases suggests that the HJR function has evolved independently from at least four distinct structural folds, namely RNase H, endonuclease, endonuclease VII-colicin E and RusA (IPR008822 from INTERPRO): The endonuclease fold, whose structural prototypes are the phage exonuclease, the very short patch repair nuclease (Vsr) and type II restriction enzymes, is shown to encompass by far a greater diversity of nucleases than previously suspected. This fold unifies archaeal HJRs (IPR002732 from INTERPRO), repair nucleases such as RecB (IPR004586 from INTERPRO) and Vsr (IPR004603 from INTERPRO), restriction enzymes and a variety of predicted nucleases whose specific activities remain to be determined. The RNase H fold characterises the RuvC family (IPR002176 from INTERPRO), which is nearly ubiquitous in bacteria, and in addition the YqgF family (IPR005227 from INTERPRO). The proteins of this family, typified by Escherichia coli YqgF, are likely to function as an alternative to RuvC in most bacteria, but could be the principal HJRs in low-GC Gram-positive bacteria and Aquifex. Endonuclease VII of phage T4 (IPR004211 from INTERPRO) is shown to serve as a structural template for many nucleases, including McrA and other type II restriction enzymes. Together with colicin E7, endonuclease VII defines a distinct metal-dependent nuclease fold. Horizontal gene transfer, lineage-specific gene loss and gene family expansion, and non-orthologous gene displacement seem to have been major forces in the evolution of HJRs and related nucleases. A remarkable case of displacement is seen in the Lyme disease spirochete Borrelia burgdorferi, which does not possess any of the typical HJRs, but instead encodes, in its chromosome and each of the linear plasmids, members of the exonuclease family predicted to function as HJRs. The diversity of HJRs and related nucleases in bacteria and archaea contrasts with their near absence in eukaryotes. The few detected eukaryotic representatives of the endonuclease fold and the RNase H fold have probably been acquired from bacteria via horizontal gene transfer. The identity of the principal HJR(s) involved in recombination in eukaryotes remains uncertain; this function could be performed by topoisomerase IB or by a novel, so far undetected, class of enzymes. Likely HJRs and related nucleases were identified in the genomes of numerous bacterial and eukaryotic DNA viruses. Gene flow between viral and cellular genomes has probably played a major role in the evolution of this class of enzymes. This family represents the YqgF family of putative Holliday junction resolvases. With the exception of the spirochetes, the YqgF family is represented in all bacterial lineages, including the mycoplasmas with their highly degenerate genomes. The RuvC resolvases are conspicuously absent in the low-GC Gram-positive bacterial lineage, with the exception of Ureaplasma parvum (Ureaplasma urealyticum biotype 1) (Q9PQY7 from SWISSPROT, []). Furthermore, loss of function ruvC mutants of E. coli show a residual HJR activity that cannot be ascribed to the prophage-encoded RusA resolvase []. This suggests that the YqgF family proteins could be alternative HJRs whose function partially overlaps with that of RuvC [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0006281 DNA repair, 0006310 DNA recombination, 0006974 response to DNA damage stimulus, 0005737 cytoplasm; PDB: 1NU0_A 1OVQ_A 1NMN_B 1VHX_B 1IV0_A.
Probab=43.19 E-value=34 Score=26.35 Aligned_cols=46 Identities=17% Similarity=0.289 Sum_probs=31.5
Q ss_pred chHHHHHHHHHHcCCcEEEEcccCCCC--CCchH-------HHHHhcC-CCcEEEE
Q 028129 166 KPTAIIGDVADELNLDLVIISMEAIHS--KHVDA-------NLLAEFI-PCPVLLL 211 (213)
Q Consensus 166 ~p~~~Il~~A~e~~aDLIVmG~~g~~~--~Gs~~-------~~vl~~a-~cPVLvV 211 (213)
...+.|.++++++++|.||+|-.-... .+-.. ..+.... ++||.++
T Consensus 38 ~~~~~l~~li~~~~i~~iVvGlP~~~~G~~~~~~~~v~~f~~~L~~~~~~ipV~~~ 93 (135)
T PF03652_consen 38 KDIEELKKLIEEYQIDGIVVGLPLNMDGSESEQARRVRKFAEELKKRFPGIPVILV 93 (135)
T ss_dssp CCHHHHHHHHHHCCECEEEEEEEBBCTSSC-CCHHHHHHHHHHHHHHH-TSEEEEE
T ss_pred hHHHHHHHHHHHhCCCEEEEeCCcccCCCccHHHHHHHHHHHHHHHhcCCCcEEEE
Confidence 488999999999999999999954211 11111 1234454 8888776
No 160
>PRK05370 argininosuccinate synthase; Validated
Probab=42.70 E-value=2.9e+02 Score=25.91 Aligned_cols=24 Identities=4% Similarity=-0.112 Sum_probs=22.0
Q ss_pred hHHHHHHHHHHcCCcEEEEcccCC
Q 028129 167 PTAIIGDVADELNLDLVIISMEAI 190 (213)
Q Consensus 167 p~~~Il~~A~e~~aDLIVmG~~g~ 190 (213)
.+..|+++|++.++|.|.-|+.|+
T Consensus 110 ia~~lv~~A~~~ga~aIAHG~TGK 133 (447)
T PRK05370 110 TGTMLVAAMKEDGVNIWGDGSTYK 133 (447)
T ss_pred HHHHHHHHHHHhCCcEEEEcCCCC
Confidence 568999999999999999999886
No 161
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=42.42 E-value=99 Score=22.60 Aligned_cols=62 Identities=16% Similarity=0.140 Sum_probs=38.3
Q ss_pred HHHHHHHHHhCCCCceeEEEEEcccCCchHHHHHHHHHHcCCcEEEEcccCCCCCCchH-HHHHhcCCCcEEEEc
Q 028129 139 LSSIRWHLSEGGFQEFRLLERLGEGSSKPTAIIGDVADELNLDLVIISMEAIHSKHVDA-NLLAEFIPCPVLLLP 212 (213)
Q Consensus 139 l~~~~~~l~~~g~~~~~v~~~v~~G~~~p~~~Il~~A~e~~aDLIVmG~~g~~~~Gs~~-~~vl~~a~cPVLvVp 212 (213)
.+++++.+++.|++ ++..- . ...++-++.+ ++|+|++|..-+ .-... ...+..-..||.+++
T Consensus 17 a~km~~~a~~~gi~---~~i~a--~---~~~e~~~~~~--~~Dvill~PQv~--~~~~~i~~~~~~~~ipv~~I~ 79 (99)
T cd05565 17 ANALNKGAKERGVP---LEAAA--G---AYGSHYDMIP--DYDLVILAPQMA--SYYDELKKDTDRLGIKLVTTT 79 (99)
T ss_pred HHHHHHHHHHCCCc---EEEEE--e---eHHHHHHhcc--CCCEEEEcChHH--HHHHHHHHHhhhcCCCEEEeC
Confidence 45666677888887 55332 2 4556666655 589999998654 11111 223556678888775
No 162
>cd08170 GlyDH Glycerol dehydrogenases (GlyDH) catalyzes oxidation of glycerol to dihydroxyacetone in glycerol dissmilation. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway . In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=42.40 E-value=2.4e+02 Score=24.88 Aligned_cols=15 Identities=27% Similarity=0.481 Sum_probs=6.9
Q ss_pred HHHHHHHHcCCcEEE
Q 028129 170 IIGDVADELNLDLVI 184 (213)
Q Consensus 170 ~Il~~A~e~~aDLIV 184 (213)
.+.+.++++++|+||
T Consensus 68 ~~~~~~~~~~~D~II 82 (351)
T cd08170 68 RLAEIARDNGADVVI 82 (351)
T ss_pred HHHHHHhhcCCCEEE
Confidence 333444455555444
No 163
>PRK11173 two-component response regulator; Provisional
Probab=41.63 E-value=1.8e+02 Score=23.27 Aligned_cols=44 Identities=14% Similarity=0.154 Sum_probs=25.8
Q ss_pred HHHHHHHHHHcCCcEEEEcccCCCCCCchHHHHHh-cCCCcEEEE
Q 028129 168 TAIIGDVADELNLDLVIISMEAIHSKHVDANLLAE-FIPCPVLLL 211 (213)
Q Consensus 168 ~~~Il~~A~e~~aDLIVmG~~g~~~~Gs~~~~vl~-~a~cPVLvV 211 (213)
....++...+.++|+|++...-....|......++ ...+|++++
T Consensus 36 ~~~~~~~~~~~~~dlvild~~l~~~~g~~~~~~lr~~~~~pii~l 80 (237)
T PRK11173 36 GAEMHQILSENDINLVIMDINLPGKNGLLLARELREQANVALMFL 80 (237)
T ss_pred HHHHHHHHhhCCCCEEEEcCCCCCCCHHHHHHHHhcCCCCCEEEE
Confidence 34455556677899999987543224544433333 346777765
No 164
>PRK12555 chemotaxis-specific methylesterase; Provisional
Probab=41.59 E-value=2.4e+02 Score=24.60 Aligned_cols=42 Identities=19% Similarity=0.341 Sum_probs=23.2
Q ss_pred HHHHHHHHcCCcEEEEcccCCCCCCchHHHHH-hcCCCcEEEE
Q 028129 170 IIGDVADELNLDLVIISMEAIHSKHVDANLLA-EFIPCPVLLL 211 (213)
Q Consensus 170 ~Il~~A~e~~aDLIVmG~~g~~~~Gs~~~~vl-~~a~cPVLvV 211 (213)
+-++.+.+..+|+|+|...-....|......+ ...++||+++
T Consensus 37 eal~~l~~~~pDlVllD~~mp~~~G~e~l~~l~~~~~~pvivv 79 (337)
T PRK12555 37 QAVERCAAQPPDVILMDLEMPRMDGVEATRRIMAERPCPILIV 79 (337)
T ss_pred HHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHCCCcEEEE
Confidence 44445566778888887643222454433332 3455777665
No 165
>PLN02476 O-methyltransferase
Probab=40.97 E-value=1.6e+02 Score=25.61 Aligned_cols=46 Identities=9% Similarity=0.148 Sum_probs=28.8
Q ss_pred HHHHHHHHHhCCCCceeEEEEEcccCCchHHHHHHHHH---HcCCcEEEEcccC
Q 028129 139 LSSIRWHLSEGGFQEFRLLERLGEGSSKPTAIIGDVAD---ELNLDLVIISMEA 189 (213)
Q Consensus 139 l~~~~~~l~~~g~~~~~v~~~v~~G~~~p~~~Il~~A~---e~~aDLIVmG~~g 189 (213)
.+.+++.+++.|+. -...+..|+ ..+.+-++.. ....|+|++.+..
T Consensus 156 ~~~Ar~n~~~aGl~---~~I~li~Gd--A~e~L~~l~~~~~~~~FD~VFIDa~K 204 (278)
T PLN02476 156 LEVAKRYYELAGVS---HKVNVKHGL--AAESLKSMIQNGEGSSYDFAFVDADK 204 (278)
T ss_pred HHHHHHHHHHcCCC---CcEEEEEcC--HHHHHHHHHhcccCCCCCEEEECCCH
Confidence 44555566777876 223455685 6666655543 2469999998754
No 166
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=40.80 E-value=2.1e+02 Score=26.66 Aligned_cols=88 Identities=15% Similarity=0.204 Sum_probs=51.0
Q ss_pred EEEEeeCCCCCCCHHHHHHHHHHHHHHhhcCCEEEEEEEeCCCCCChhhHHHHHHHHHHHHHhCCCCceeEEEEEcccCC
Q 028129 86 LLLPITDQNPYLSEGTRQAAATTAALAKKYGADITVVVIDERQKESLPEHENRLSSIRWHLSEGGFQEFRLLERLGEGSS 165 (213)
Q Consensus 86 ILV~vD~~~~~~S~~s~~Al~~A~~LA~~~~a~L~ll~V~~~~~~~~~~~~~~l~~~~~~l~~~g~~~~~v~~~v~~G~~ 165 (213)
.+|.+. |+......-.+|..+-+ .|-+..++..+...... .+.++......+++-|. ...+-
T Consensus 105 mfVGLq-----G~GKTTtc~KlA~y~kk-kG~K~~LvcaDTFRagA-------fDQLkqnA~k~~iP~yg---syte~-- 166 (483)
T KOG0780|consen 105 MFVGLQ-----GSGKTTTCTKLAYYYKK-KGYKVALVCADTFRAGA-------FDQLKQNATKARVPFYG---SYTEA-- 166 (483)
T ss_pred EEEecc-----CCCcceeHHHHHHHHHh-cCCceeEEeecccccch-------HHHHHHHhHhhCCeeEe---ccccc--
Confidence 345566 77777777788877755 35566665555433211 23333344555777332 21111
Q ss_pred chH---HHHHHHHHHcCCcEEEEcccCCC
Q 028129 166 KPT---AIIGDVADELNLDLVIISMEAIH 191 (213)
Q Consensus 166 ~p~---~~Il~~A~e~~aDLIVmG~~g~~ 191 (213)
||+ .+=++..++.++|+||+-+.|||
T Consensus 167 dpv~ia~egv~~fKke~fdvIIvDTSGRh 195 (483)
T KOG0780|consen 167 DPVKIASEGVDRFKKENFDVIIVDTSGRH 195 (483)
T ss_pred chHHHHHHHHHHHHhcCCcEEEEeCCCch
Confidence 344 34445667789999999998874
No 167
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=40.75 E-value=2.4e+02 Score=24.36 Aligned_cols=108 Identities=13% Similarity=0.078 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHHHhhcCCEEEEE--EEeCCCCCChhhHHHHHHHHHHHHHhCCCCceeEEEEEcccCCchHHHHHHHHH
Q 028129 99 EGTRQAAATTAALAKKYGADITVV--VIDERQKESLPEHENRLSSIRWHLSEGGFQEFRLLERLGEGSSKPTAIIGDVAD 176 (213)
Q Consensus 99 ~~s~~Al~~A~~LA~~~~a~L~ll--~V~~~~~~~~~~~~~~l~~~~~~l~~~g~~~~~v~~~v~~G~~~p~~~Il~~A~ 176 (213)
+-..++++.-++.....|.+=.++ +..+....+.++.++.++.+.+.. ...+. +...+.. .++-+-++.++|+
T Consensus 22 ~iD~~~l~~li~~l~~~Gv~gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~-~g~~p---vi~gv~~-~t~~ai~~a~~a~ 96 (296)
T TIGR03249 22 SFDEAAYRENIEWLLGYGLEALFAAGGTGEFFSLTPAEYEQVVEIAVSTA-KGKVP---VYTGVGG-NTSDAIEIARLAE 96 (296)
T ss_pred CcCHHHHHHHHHHHHhcCCCEEEECCCCcCcccCCHHHHHHHHHHHHHHh-CCCCc---EEEecCc-cHHHHHHHHHHHH
Confidence 345556666666555556443332 333333223233333333333322 22233 5444422 1133445678999
Q ss_pred HcCCcEEEEcccCCCC---CCchHHH--HHhcCCCcEEEE
Q 028129 177 ELNLDLVIISMEAIHS---KHVDANL--LAEFIPCPVLLL 211 (213)
Q Consensus 177 e~~aDLIVmG~~g~~~---~Gs~~~~--vl~~a~cPVLvV 211 (213)
+.++|-+++-...... .+....+ ++..+++||++.
T Consensus 97 ~~Gadav~~~pP~y~~~s~~~i~~~f~~v~~a~~~pvilY 136 (296)
T TIGR03249 97 KAGADGYLLLPPYLINGEQEGLYAHVEAVCESTDLGVIVY 136 (296)
T ss_pred HhCCCEEEECCCCCCCCCHHHHHHHHHHHHhccCCCEEEE
Confidence 9999999886643211 1222222 367788999875
No 168
>COG0415 PhrB Deoxyribodipyrimidine photolyase [DNA replication, recombination, and repair]
Probab=40.69 E-value=1.8e+02 Score=27.45 Aligned_cols=80 Identities=23% Similarity=0.262 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHHHhhcCCEEEEEEEe-CCCCCCh-h----hHHHHHHHHHHHHHhCCCCceeEEEEEcccCCchHHHHH
Q 028129 99 EGTRQAAATTAALAKKYGADITVVVID-ERQKESL-P----EHENRLSSIRWHLSEGGFQEFRLLERLGEGSSKPTAIIG 172 (213)
Q Consensus 99 ~~s~~Al~~A~~LA~~~~a~L~ll~V~-~~~~~~~-~----~~~~~l~~~~~~l~~~g~~~~~v~~~v~~G~~~p~~~Il 172 (213)
-....||.+|+.-.... +.+|.+. +...... + -..+.+.++...+.+.|++ . .+..|+ +.+.|.
T Consensus 14 ~~DN~aL~~A~~~~~~~---~~~vfi~~~~~~~~~~~~~~~Fl~~sL~~L~~~L~~~gi~---L--~v~~~~--~~~~l~ 83 (461)
T COG0415 14 LTDNAALAAACQSGQPV---IIAVFILDPEQLGHASPRHAAFLLQSLQALQQSLAELGIP---L--LVREGD--PEQVLP 83 (461)
T ss_pred cCChHHHHHHHhcCCCc---eEEEEEechhhccccCHHHHHHHHHHHHHHHHHHHHcCCc---e--EEEeCC--HHHHHH
Confidence 34456777776554322 2334443 3333211 1 2234466677778888888 4 345686 999999
Q ss_pred HHHHHcCCcEEEEccc
Q 028129 173 DVADELNLDLVIISME 188 (213)
Q Consensus 173 ~~A~e~~aDLIVmG~~ 188 (213)
+++++.+++-|+-...
T Consensus 84 ~~~~~~~~~~v~~n~~ 99 (461)
T COG0415 84 ELAKQLAATTVFWNRD 99 (461)
T ss_pred HHHHHhCcceEEeeee
Confidence 9999999887776554
No 169
>TIGR00884 guaA_Cterm GMP synthase (glutamine-hydrolyzing), C-terminal domain or B subunit. This protein of purine de novo biosynthesis is well-conserved. However, it appears to split into two separate polypeptide chains in most of the Archaea. This C-terminal region would be the larger subunit
Probab=40.50 E-value=2.6e+02 Score=24.67 Aligned_cols=93 Identities=11% Similarity=0.139 Sum_probs=52.2
Q ss_pred CcEEEEeeCCCCCCCHHHHHHHHHHHHHHhhcCCEEEEEEEeCCCCCChhhHHHHHHHHHHHHH-hCCCCceeEEEEE--
Q 028129 84 KHLLLPITDQNPYLSEGTRQAAATTAALAKKYGADITVVVIDERQKESLPEHENRLSSIRWHLS-EGGFQEFRLLERL-- 160 (213)
Q Consensus 84 k~ILV~vD~~~~~~S~~s~~Al~~A~~LA~~~~a~L~ll~V~~~~~~~~~~~~~~l~~~~~~l~-~~g~~~~~v~~~v-- 160 (213)
+++++++. |.-.|.-++..+.. ..|.++++++++...... . ..+.+.+.+. ..|++-.-+....
T Consensus 17 ~kVvValS-----GGVDSsvla~ll~~---~~G~~v~av~vd~G~~~~-~----E~e~~~~~~~~~lgi~~~vvd~~e~f 83 (311)
T TIGR00884 17 AKVIIALS-----GGVDSSVAAVLAHR---AIGDRLTCVFVDHGLLRK-G----EAEQVVKTFGDRLGLNLVYVDAKERF 83 (311)
T ss_pred CcEEEEec-----CChHHHHHHHHHHH---HhCCCEEEEEEeCCCCCh-H----HHHHHHHHHHHHcCCcEEEEeCcHHH
Confidence 78999999 77777665554433 246689999998765321 1 1233333333 4566511111000
Q ss_pred ---cccCCch-----------HHHHHHHHHHcC-CcEEEEcccC
Q 028129 161 ---GEGSSKP-----------TAIIGDVADELN-LDLVIISMEA 189 (213)
Q Consensus 161 ---~~G~~~p-----------~~~Il~~A~e~~-aDLIVmG~~g 189 (213)
..|-+++ ...+.++|++++ ++.|+.|++.
T Consensus 84 l~~l~~v~~p~~~r~~~~~~~~~~~~~~A~~~g~~~~la~Gt~~ 127 (311)
T TIGR00884 84 LSALKGVTDPEEKRKIIGRVFIEVFEREAKKIGDAEYLAQGTIY 127 (311)
T ss_pred HhhhcCCCChHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCC
Confidence 0111012 234556788999 9999999864
No 170
>PRK13337 putative lipid kinase; Reviewed
Probab=40.44 E-value=2.4e+02 Score=24.31 Aligned_cols=17 Identities=35% Similarity=0.448 Sum_probs=7.4
Q ss_pred HHHHHHHHHcCCcEEEE
Q 028129 169 AIIGDVADELNLDLVII 185 (213)
Q Consensus 169 ~~Il~~A~e~~aDLIVm 185 (213)
..+.+.+.+.++|+||.
T Consensus 47 ~~~a~~~~~~~~d~vvv 63 (304)
T PRK13337 47 TLAAERAVERKFDLVIA 63 (304)
T ss_pred HHHHHHHHhcCCCEEEE
Confidence 33343333444555443
No 171
>PRK10816 DNA-binding transcriptional regulator PhoP; Provisional
Probab=40.20 E-value=1.8e+02 Score=22.84 Aligned_cols=62 Identities=15% Similarity=0.176 Sum_probs=33.6
Q ss_pred HHHHHHHhCCCCceeEEEEEcccCCchHHHHHHHHHHcCCcEEEEcccCCCCCCchHHHHHhc--CCCcEEEE
Q 028129 141 SIRWHLSEGGFQEFRLLERLGEGSSKPTAIIGDVADELNLDLVIISMEAIHSKHVDANLLAEF--IPCPVLLL 211 (213)
Q Consensus 141 ~~~~~l~~~g~~~~~v~~~v~~G~~~p~~~Il~~A~e~~aDLIVmG~~g~~~~Gs~~~~vl~~--a~cPVLvV 211 (213)
.+...+...|+. +. .... .. ..++...+.++|+|++...-....|......++. ..+|++++
T Consensus 15 ~l~~~L~~~g~~---v~-~~~~----~~-~~l~~~~~~~~dlvild~~l~~~~g~~l~~~lr~~~~~~pii~l 78 (223)
T PRK10816 15 HLKVQLQDAGHQ---VD-AAED----AK-EADYYLNEHLPDIAIVDLGLPDEDGLSLIRRWRSNDVSLPILVL 78 (223)
T ss_pred HHHHHHHHCCCE---EE-EECC----HH-HHHHHHhhCCCCEEEEECCCCCCCHHHHHHHHHhcCCCCCEEEE
Confidence 334445555655 54 2221 33 3345566778999999865432234443333433 46788775
No 172
>COG1831 Predicted metal-dependent hydrolase (urease superfamily) [General function prediction only]
Probab=40.11 E-value=2.6e+02 Score=24.55 Aligned_cols=84 Identities=15% Similarity=0.079 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHHhhcCCEEEEEEEeCCCCCChh-------hHHHHHHHHHHHHHhCCCCceeEEEEEcccCCchHHHH
Q 028129 99 EGTRQAAATTAALAKKYGADITVVVIDERQKESLP-------EHENRLSSIRWHLSEGGFQEFRLLERLGEGSSKPTAII 171 (213)
Q Consensus 99 ~~s~~Al~~A~~LA~~~~a~L~ll~V~~~~~~~~~-------~~~~~l~~~~~~l~~~g~~~~~v~~~v~~G~~~p~~~I 171 (213)
+...+-+..++++|.++-.+=..+.+.+.....++ ...+.+..+.+...+.|+. +..+....++.-.+.|
T Consensus 100 eea~e~m~~~lelA~k~v~eg~avaiGEvGrPHypVs~~v~~~~n~vl~~a~elA~dvdc~---vqLHtes~~~~~~~~i 176 (285)
T COG1831 100 EEALEEMRHALELAAKLVEEGKAVAIGEVGRPHYPVSEEVWEASNEVLEYAMELAKDVDCA---VQLHTESLDEETYEEI 176 (285)
T ss_pred HHHHHHHHHHHHHHHHHHhccceeeeeccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCc---EEEecCCCChHHHHHH
Confidence 34556666666776665333345555444333221 2344555666667777777 7666654442347899
Q ss_pred HHHHHHcCC--cEEEE
Q 028129 172 GDVADELNL--DLVII 185 (213)
Q Consensus 172 l~~A~e~~a--DLIVm 185 (213)
-++|++.++ +.+|+
T Consensus 177 ~~~ak~~G~~~~~VVk 192 (285)
T COG1831 177 AEMAKEAGIKPYRVVK 192 (285)
T ss_pred HHHHHHhCCCcceeEe
Confidence 999999985 56665
No 173
>TIGR02855 spore_yabG sporulation peptidase YabG. Members of this family are the protein YabG, demonstrated for Bacillus subtilis to be an endopeptidase able to release N-terminal peptides from a number of sporulation proteins, including CotT, CotF, and SpoIVA. It appears to be expressed under control of sigma-K.
Probab=40.00 E-value=1.3e+02 Score=26.46 Aligned_cols=49 Identities=14% Similarity=0.131 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHhCCCCceeEEEEEcccCCchHHHHHHHHHHcCCcEEEEcccC
Q 028129 137 NRLSSIRWHLSEGGFQEFRLLERLGEGSSKPTAIIGDVADELNLDLVIISMEA 189 (213)
Q Consensus 137 ~~l~~~~~~l~~~g~~~~~v~~~v~~G~~~p~~~Il~~A~e~~aDLIVmG~~g 189 (213)
+.|+.-...-++.|++-+++ ++.+.+ -.+.|.+..++++.|++|+..|.
T Consensus 115 ~YL~~Cl~~Ykql~i~a~G~--~~~E~e--qp~~i~~Ll~~~~PDIlViTGHD 163 (283)
T TIGR02855 115 EYLRKCLKLYKKIGVPVVGI--HCKEKE--MPEKVLDLIEEVRPDILVITGHD 163 (283)
T ss_pred HHHHHHHHHHHHhCCceEEE--Eecchh--chHHHHHHHHHhCCCEEEEeCch
Confidence 45655555666778884332 233343 67899999999999999996654
No 174
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=39.99 E-value=3e+02 Score=25.25 Aligned_cols=84 Identities=14% Similarity=-0.001 Sum_probs=47.8
Q ss_pred CCcEEEEeeCCCCCCCHHHHHHHHHHHHHHhhcCCEEEEEEEeCCCCCChhhHHHHHHHHHHHHHhC--CCCceeEEEEE
Q 028129 83 FKHLLLPITDQNPYLSEGTRQAAATTAALAKKYGADITVVVIDERQKESLPEHENRLSSIRWHLSEG--GFQEFRLLERL 160 (213)
Q Consensus 83 ~k~ILV~vD~~~~~~S~~s~~Al~~A~~LA~~~~a~L~ll~V~~~~~~~~~~~~~~l~~~~~~l~~~--g~~~~~v~~~v 160 (213)
-|++.|..| ...++..+..|. +.|.++..+...... + ...++++..+.+. +.. +. +
T Consensus 303 gkrv~i~g~---------~~~~~~la~~L~-elGm~v~~~~~~~~~----~---~~~~~~~~~l~~~~~~~~---~~--v 360 (435)
T cd01974 303 GKKFALYGD---------PDFLIGLTSFLL-ELGMEPVHVLTGNGG----K---RFEKEMQALLDASPYGAG---AK--V 360 (435)
T ss_pred CCEEEEEcC---------hHHHHHHHHHHH-HCCCEEEEEEeCCCC----H---HHHHHHHHHHhhcCCCCC---cE--E
Confidence 478887777 345777776676 689988665543321 1 1122333334331 222 22 2
Q ss_pred cccCCchHHHHHHHHHHcCCcEEEEcccCC
Q 028129 161 GEGSSKPTAIIGDVADELNLDLVIISMEAI 190 (213)
Q Consensus 161 ~~G~~~p~~~Il~~A~e~~aDLIVmG~~g~ 190 (213)
..+. -..++.+.+++.++||++=+++++
T Consensus 361 ~~~~--d~~e~~~~i~~~~pDliiG~s~~~ 388 (435)
T cd01974 361 YPGK--DLWHLRSLLFTEPVDLLIGNTYGK 388 (435)
T ss_pred EECC--CHHHHHHHHhhcCCCEEEECccHH
Confidence 2232 256788888999999977665543
No 175
>PRK13054 lipid kinase; Reviewed
Probab=39.85 E-value=2.5e+02 Score=24.22 Aligned_cols=17 Identities=29% Similarity=0.128 Sum_probs=7.7
Q ss_pred HHHHHHHHHcCCcEEEE
Q 028129 169 AIIGDVADELNLDLVII 185 (213)
Q Consensus 169 ~~Il~~A~e~~aDLIVm 185 (213)
.++.+.+.+.++|.||+
T Consensus 46 ~~~a~~~~~~~~d~vvv 62 (300)
T PRK13054 46 ARYVEEALALGVATVIA 62 (300)
T ss_pred HHHHHHHHHcCCCEEEE
Confidence 34444443445555543
No 176
>COG3340 PepE Peptidase E [Amino acid transport and metabolism]
Probab=39.72 E-value=2.3e+02 Score=23.96 Aligned_cols=79 Identities=14% Similarity=0.134 Sum_probs=49.7
Q ss_pred CCHHHHHHHHHHHHHHhhcCCEEEEE-EEeCCCCCChhhHHHHHHHHHHHHHhCCCCceeEEEEEcccCCchHHHHHHHH
Q 028129 97 LSEGTRQAAATTAALAKKYGADITVV-VIDERQKESLPEHENRLSSIRWHLSEGGFQEFRLLERLGEGSSKPTAIIGDVA 175 (213)
Q Consensus 97 ~S~~s~~Al~~A~~LA~~~~a~L~ll-~V~~~~~~~~~~~~~~l~~~~~~l~~~g~~~~~v~~~v~~G~~~p~~~Il~~A 175 (213)
+.+.......+..+..+..+-++.++ ...... +.+...++.++.+++.|+. +...-..- ++.+.|.++.
T Consensus 13 ~~~~~~~~~~~i~n~l~g~~~~i~FIPtAs~~~-----~~~~Yv~k~~~~l~~lg~~---v~~L~l~~--~~~~~Ie~~l 82 (224)
T COG3340 13 FEDVLEHFLPFIANFLQGKRKTIAFIPTASVDS-----EDDFYVEKVRNALAKLGLE---VSELHLSK--PPLAAIENKL 82 (224)
T ss_pred cchhhhhhhHHHHHHhcCCCceEEEEecCcccc-----chHHHHHHHHHHHHHcCCe---eeeeeccC--CCHHHHHHhh
Confidence 34455566677766544444466655 222111 2234567777888888988 65433333 5888998888
Q ss_pred HHcCCcEEEEcc
Q 028129 176 DELNLDLVIISM 187 (213)
Q Consensus 176 ~e~~aDLIVmG~ 187 (213)
.+ +|.|.+|.
T Consensus 83 ~~--~d~IyVgG 92 (224)
T COG3340 83 MK--ADIIYVGG 92 (224)
T ss_pred hh--ccEEEECC
Confidence 76 99999986
No 177
>PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=39.62 E-value=1.3e+02 Score=26.24 Aligned_cols=62 Identities=16% Similarity=0.137 Sum_probs=40.0
Q ss_pred HHHhCCCCceeEEEEEcccCCchHHHHHHHHHHcCCcEEEEcccCCCC-CCchHH-----HHHhcCCCcEEE
Q 028129 145 HLSEGGFQEFRLLERLGEGSSKPTAIIGDVADELNLDLVIISMEAIHS-KHVDAN-----LLAEFIPCPVLL 210 (213)
Q Consensus 145 ~l~~~g~~~~~v~~~v~~G~~~p~~~Il~~A~e~~aDLIVmG~~g~~~-~Gs~~~-----~vl~~a~cPVLv 210 (213)
...+.++. +-..-..+. .-..++++.|++.+..+|+..+.+... .|.... .+++++++||.+
T Consensus 12 ~A~~~~ya---V~AfNv~n~-e~~~avi~AAee~~sPvIlq~~~~~~~~~g~~~~~~~~~~~A~~~~VPVal 79 (284)
T PRK12857 12 KAEKGGYA---VGAFNCNNM-EIVQAIVAAAEAEKSPVIIQASQGAIKYAGIEYISAMVRTAAEKASVPVAL 79 (284)
T ss_pred HHHHcCCe---EEEEEeCCH-HHHHHHHHHHHHhCCCEEEEechhHhhhCCHHHHHHHHHHHHHHCCCCEEE
Confidence 34444444 544433343 578899999999999999998865311 243321 238889999875
No 178
>PRK12361 hypothetical protein; Provisional
Probab=39.61 E-value=2.2e+02 Score=26.97 Aligned_cols=43 Identities=14% Similarity=0.152 Sum_probs=27.3
Q ss_pred hHHHHHHHHHHcCCcEEEEcccCCCCCCchHHHH--HhcCCCcEEEEcC
Q 028129 167 PTAIIGDVADELNLDLVIISMEAIHSKHVDANLL--AEFIPCPVLLLPL 213 (213)
Q Consensus 167 p~~~Il~~A~e~~aDLIVmG~~g~~~~Gs~~~~v--l~~a~cPVLvVp~ 213 (213)
-+..+.+.+.+.++|+||... | .|.....+ +....+|+-++|.
T Consensus 285 ~a~~la~~~~~~~~d~Viv~G-G---DGTl~ev~~~l~~~~~~lgiiP~ 329 (547)
T PRK12361 285 SAEALAKQARKAGADIVIACG-G---DGTVTEVASELVNTDITLGIIPL 329 (547)
T ss_pred cHHHHHHHHHhcCCCEEEEEC-C---CcHHHHHHHHHhcCCCCEEEecC
Confidence 457777767667788886632 2 34444443 4456788888874
No 179
>PRK05920 aromatic acid decarboxylase; Validated
Probab=39.53 E-value=75 Score=26.42 Aligned_cols=36 Identities=19% Similarity=0.309 Sum_probs=29.4
Q ss_pred CCCcEEEEeeCCCCCCCHHHHHHHHHHHHHHhhcCCEEEEEE
Q 028129 82 NFKHLLLPITDQNPYLSEGTRQAAATTAALAKKYGADITVVV 123 (213)
Q Consensus 82 ~~k~ILV~vD~~~~~~S~~s~~Al~~A~~LA~~~~a~L~ll~ 123 (213)
+.++|++++. |+-.+.++++....|.+. |.+++++.
T Consensus 2 ~~krIllgIT-----Gsiaa~ka~~lvr~L~~~-g~~V~vi~ 37 (204)
T PRK05920 2 KMKRIVLAIT-----GASGAIYGVRLLECLLAA-DYEVHLVI 37 (204)
T ss_pred CCCEEEEEEe-----CHHHHHHHHHHHHHHHHC-CCEEEEEE
Confidence 5689999999 899998888888888654 77777664
No 180
>COG2102 Predicted ATPases of PP-loop superfamily [General function prediction only]
Probab=39.48 E-value=2.4e+02 Score=23.94 Aligned_cols=85 Identities=13% Similarity=0.139 Sum_probs=49.1
Q ss_pred CCHHHHHHHHHHHHHHhhcCCEEEEE-EEeCCCCCChhhHHHHHHHHHHHHHhCCCCceeEEEEEcccC-CchHHHHHHH
Q 028129 97 LSEGTRQAAATTAALAKKYGADITVV-VIDERQKESLPEHENRLSSIRWHLSEGGFQEFRLLERLGEGS-SKPTAIIGDV 174 (213)
Q Consensus 97 ~S~~s~~Al~~A~~LA~~~~a~L~ll-~V~~~~~~~~~~~~~~l~~~~~~l~~~g~~~~~v~~~v~~G~-~~p~~~Il~~ 174 (213)
|.+++. +|+..|.+.|-++..+ ++.+....++.-.-..++-+..+.+.-|++ +......|. .+-.+.+.+.
T Consensus 9 GGKDS~----~Al~~a~~~G~eV~~Ll~~~p~~~dS~m~H~~n~~~~~~~Ae~~gi~---l~~~~~~g~~e~eve~L~~~ 81 (223)
T COG2102 9 GGKDSF----YALYLALEEGHEVVYLLTVKPENGDSYMFHTPNLELAELQAEAMGIP---LVTFDTSGEEEREVEELKEA 81 (223)
T ss_pred cCcHHH----HHHHHHHHcCCeeEEEEEEecCCCCeeeeeccchHHHHHHHHhcCCc---eEEEecCccchhhHHHHHHH
Confidence 566664 4555566667788777 555444323211112223333344555777 554444441 0256777788
Q ss_pred HHHcCCcEEEEccc
Q 028129 175 ADELNLDLVIISME 188 (213)
Q Consensus 175 A~e~~aDLIVmG~~ 188 (213)
.+..++|-||.|+-
T Consensus 82 l~~l~~d~iv~GaI 95 (223)
T COG2102 82 LRRLKVDGIVAGAI 95 (223)
T ss_pred HHhCcccEEEEchh
Confidence 88999999999983
No 181
>PF05582 Peptidase_U57: YabG peptidase U57; InterPro: IPR008764 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belong to MEROPS peptidase family U57 (clan U-). The type example is the YabG protein of Bacillus subtilis. This is a protease involved in the synthesis and maturation of the spore coat proteins SpoIVA and YrbA of B. subtilis [].
Probab=39.47 E-value=1.2e+02 Score=26.60 Aligned_cols=48 Identities=15% Similarity=0.160 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHhCCCCceeEEEEEcccCCchHHHHHHHHHHcCCcEEEEccc
Q 028129 137 NRLSSIRWHLSEGGFQEFRLLERLGEGSSKPTAIIGDVADELNLDLVIISME 188 (213)
Q Consensus 137 ~~l~~~~~~l~~~g~~~~~v~~~v~~G~~~p~~~Il~~A~e~~aDLIVmG~~ 188 (213)
+.|+.-...-++.|++-+++ .+.+.+ -.+.|.+..++++.|++|+..|
T Consensus 116 ~YL~~Cl~~Ykql~i~a~G~--~~~E~e--qp~~i~~Ll~~~~PDIlViTGH 163 (287)
T PF05582_consen 116 EYLNKCLKVYKQLGIPAVGI--HVPEKE--QPEKIYRLLEEYRPDILVITGH 163 (287)
T ss_pred HHHHHHHHHHHHcCCceEEE--EechHH--hhHHHHHHHHHcCCCEEEEeCc
Confidence 55666556667778884332 233343 6789999999999999999654
No 182
>PRK10653 D-ribose transporter subunit RbsB; Provisional
Probab=39.40 E-value=1.9e+02 Score=24.30 Aligned_cols=18 Identities=11% Similarity=0.226 Sum_probs=10.3
Q ss_pred HHHHHHHHcCCcEEEEcc
Q 028129 170 IIGDVADELNLDLVIISM 187 (213)
Q Consensus 170 ~Il~~A~e~~aDLIVmG~ 187 (213)
..++.+++.++-+|.++.
T Consensus 98 ~~l~~~~~~~ipvV~~~~ 115 (295)
T PRK10653 98 NAVKMANQANIPVITLDR 115 (295)
T ss_pred HHHHHHHHCCCCEEEEcc
Confidence 344555555666666654
No 183
>PRK15411 rcsA colanic acid capsular biosynthesis activation protein A; Provisional
Probab=39.39 E-value=1.9e+02 Score=23.53 Aligned_cols=42 Identities=10% Similarity=0.088 Sum_probs=26.2
Q ss_pred HHHHHHHHHHcCCcEEEEc----ccCCCCCCchHHHHH-h-cCCCcEEEE
Q 028129 168 TAIIGDVADELNLDLVIIS----MEAIHSKHVDANLLA-E-FIPCPVLLL 211 (213)
Q Consensus 168 ~~~Il~~A~e~~aDLIVmG----~~g~~~~Gs~~~~vl-~-~a~cPVLvV 211 (213)
.++.++.+++.++|+|+|. ..+. .|.....-+ + ...++|+++
T Consensus 36 ~~~~~~~~~~~~pDlvLlDl~~~l~~~--~g~~~i~~i~~~~p~~~iivl 83 (207)
T PRK15411 36 VDDLAIACDSLRPSVVFINEDCFIHDA--SNSQRIKQIINQHPNTLFIVF 83 (207)
T ss_pred HHHHHHHHhccCCCEEEEeCcccCCCC--ChHHHHHHHHHHCCCCeEEEE
Confidence 4455667777889999999 4444 555433222 3 334888775
No 184
>TIGR01286 nifK nitrogenase molybdenum-iron protein beta chain. This model represents the majority of known sequences of the nitrogenase molybdenum-iron protein beta subunit. A distinct clade in a phylogenetic tree contains molybdenum-iron, vanadium-iron, and iron-iron forms of nitrogenase beta subunit and is excluded from this model. Nitrogenase, also called dinitrogenase, is responsible for nitrogen fixation. Note: the trusted cutoff score has recently been lowered to include an additional family in which the beta subunit is shorter by about 50 amino acids at the N-terminus. In species with the shorter form of the beta subunit, the alpha subunit has a novel insert of similar length.
Probab=39.17 E-value=3.5e+02 Score=25.74 Aligned_cols=98 Identities=7% Similarity=0.013 Sum_probs=54.2
Q ss_pred CCCcEEEEeeCCCCCCCHHHHHHHHHHHHHHhhcCCEEEEEEEeCCCCCChhhHHHHHHHHHHHHHhCCCCceeEEEEEc
Q 028129 82 NFKHLLLPITDQNPYLSEGTRQAAATTAALAKKYGADITVVVIDERQKESLPEHENRLSSIRWHLSEGGFQEFRLLERLG 161 (213)
Q Consensus 82 ~~k~ILV~vD~~~~~~S~~s~~Al~~A~~LA~~~~a~L~ll~V~~~~~~~~~~~~~~l~~~~~~l~~~g~~~~~v~~~v~ 161 (213)
.-|++.|..| ...++..+..|. +.|.+...+...... .+. .++++..+...... ....+.
T Consensus 362 ~GKrvaI~gd---------pd~~~~l~~fL~-ElGmepv~v~~~~~~----~~~---~~~l~~ll~~~~~~---~~~~v~ 421 (515)
T TIGR01286 362 HGKRFAIYGD---------PDFVMGLVRFVL-ELGCEPVHILCTNGT----KRW---KAEMKALLAASPYG---QNATVW 421 (515)
T ss_pred cCceEEEECC---------HHHHHHHHHHHH-HCCCEEEEEEeCCCC----HHH---HHHHHHHHhcCCCC---CccEEE
Confidence 3478888888 345666665665 578887544433221 111 22333334332221 122333
Q ss_pred ccCCchHHHHHHHHHHcCCcEEEEcccCCCCCCchHHHHHhcCCCcEE
Q 028129 162 EGSSKPTAIIGDVADELNLDLVIISMEAIHSKHVDANLLAEFIPCPVL 209 (213)
Q Consensus 162 ~G~~~p~~~Il~~A~e~~aDLIVmG~~g~~~~Gs~~~~vl~~a~cPVL 209 (213)
.|. -...+.+.+.+.++||+|=+++++ .++++..+|.+
T Consensus 422 ~~~--Dl~~l~~~l~~~~~DlliG~s~~k--------~~a~~~giPli 459 (515)
T TIGR01286 422 IGK--DLWHLRSLVFTEPVDFLIGNSYGK--------YIQRDTLVPLI 459 (515)
T ss_pred eCC--CHHHHHHHHhhcCCCEEEECchHH--------HHHHHcCCCEE
Confidence 454 345777888888999999766654 24555566654
No 185
>cd01537 PBP1_Repressors_Sugar_Binding_like Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems. Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems, all of which contain the type I periplasmic binding protein-like fold. Their specific ligands include lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor; in general the sugar binding domain in this family binds a sugar, which in turn changes the DNA binding activity of the repressor domain. The core structure of the periplasmic binding proteins is classified into two types and they differ in number and order of beta strands in each domain: type I, which has six beta strands, and type II, which has five beta strands. These two distinct structural arrangem
Probab=38.98 E-value=2e+02 Score=22.86 Aligned_cols=17 Identities=12% Similarity=0.319 Sum_probs=10.7
Q ss_pred HHHHHHcCCcEEEEccc
Q 028129 172 GDVADELNLDLVIISME 188 (213)
Q Consensus 172 l~~A~e~~aDLIVmG~~ 188 (213)
++.+.+.++-+|..+..
T Consensus 72 ~~~l~~~~ip~v~~~~~ 88 (264)
T cd01537 72 VKLARKAGIPVVLVDRD 88 (264)
T ss_pred HHHhhhcCCCEEEeccC
Confidence 56666666667766654
No 186
>PRK05647 purN phosphoribosylglycinamide formyltransferase; Reviewed
Probab=38.92 E-value=2.2e+02 Score=23.36 Aligned_cols=89 Identities=18% Similarity=0.122 Sum_probs=45.9
Q ss_pred CcEEEEeeCCCCCCCHHHHHHHHHHHHHHhhcCCEEEEEEEeCCCCCChhhHHHHHHHHHHHHHhCCCCceeEEEEEccc
Q 028129 84 KHLLLPITDQNPYLSEGTRQAAATTAALAKKYGADITVVVIDERQKESLPEHENRLSSIRWHLSEGGFQEFRLLERLGEG 163 (213)
Q Consensus 84 k~ILV~vD~~~~~~S~~s~~Al~~A~~LA~~~~a~L~ll~V~~~~~~~~~~~~~~l~~~~~~l~~~g~~~~~v~~~v~~G 163 (213)
++|.|-+. ++....+++-.+..- ....+.+.++....... .......+.|++-+.+...-..+
T Consensus 2 ~ki~vl~s-----g~gs~~~~ll~~~~~-~~~~~~I~~vvs~~~~~-----------~~~~~a~~~gIp~~~~~~~~~~~ 64 (200)
T PRK05647 2 KRIVVLAS-----GNGSNLQAIIDACAA-GQLPAEIVAVISDRPDA-----------YGLERAEAAGIPTFVLDHKDFPS 64 (200)
T ss_pred ceEEEEEc-----CCChhHHHHHHHHHc-CCCCcEEEEEEecCccc-----------hHHHHHHHcCCCEEEECccccCc
Confidence 46777666 555555555555321 12345555543332210 12345667788822111111111
Q ss_pred CCchHHHHHHHHHHcCCcEEEEcccC
Q 028129 164 SSKPTAIIGDVADELNLDLVIISMEA 189 (213)
Q Consensus 164 ~~~p~~~Il~~A~e~~aDLIVmG~~g 189 (213)
...-.+++.+..++.++|+||+...+
T Consensus 65 ~~~~~~~~~~~l~~~~~D~iv~~~~~ 90 (200)
T PRK05647 65 REAFDAALVEALDAYQPDLVVLAGFM 90 (200)
T ss_pred hhHhHHHHHHHHHHhCcCEEEhHHhh
Confidence 00124678888889999999996654
No 187
>PF02568 ThiI: Thiamine biosynthesis protein (ThiI); InterPro: IPR020536 Thiamine pyrophosphate (TPP) is synthesized de novo in many bacteria and is a required cofactor for many enzymes in the cell. ThiI is required for thiazole synthesis in the thiamine biosynthesis pathway []. Almost all proteins containing this entry have an N-terminal THUMP domain (see IPR004114 from INTERPRO).; GO: 0003723 RNA binding, 0009228 thiamine biosynthetic process, 0005737 cytoplasm; PDB: 1VBK_B 2C5S_A.
Probab=38.33 E-value=2.3e+02 Score=23.39 Aligned_cols=93 Identities=15% Similarity=0.150 Sum_probs=39.9
Q ss_pred cEEEEeeCCCCCCCHHHHHHHHHHHHHHhhcCCEEEEEEEeCCCCCChhhHHHHHHHHHHHHHhCCCCceeEEEEEc---
Q 028129 85 HLLLPITDQNPYLSEGTRQAAATTAALAKKYGADITVVVIDERQKESLPEHENRLSSIRWHLSEGGFQEFRLLERLG--- 161 (213)
Q Consensus 85 ~ILV~vD~~~~~~S~~s~~Al~~A~~LA~~~~a~L~ll~V~~~~~~~~~~~~~~l~~~~~~l~~~g~~~~~v~~~v~--- 161 (213)
++|+-+. |.-+|. .|.++..+.|.++..||.......+ +...+..+++.+.+.+.+.. +.+...++
T Consensus 5 k~l~LlS-----GGiDSp----VAa~lm~krG~~V~~l~f~~~~~~~-~~~~~k~~~l~~~l~~~~~~-~~~~l~~v~~~ 73 (197)
T PF02568_consen 5 KALALLS-----GGIDSP----VAAWLMMKRGCEVIALHFDSPPFTG-EKAREKVEELAEKLSEYSPG-HKIRLYVVDFT 73 (197)
T ss_dssp EEEEE-S-----SCCHHH----HHHHHHHCBT-EEEEEEEE-TTTSS-CCCHHHHHHHHHHHHCCSTT-S-EEEEEECHH
T ss_pred eEEEEec-----CCccHH----HHHHHHHHCCCEEEEEEEECCCCCC-HHHHHHHHHHHHHHHHhCCC-cceeEEEECcH
Confidence 4555555 443343 3566777789999999887543322 11223334444444443210 00211111
Q ss_pred -------ccCCc----------hHHHHHHHHHHcCCcEEEEccc
Q 028129 162 -------EGSSK----------PTAIIGDVADELNLDLVIISME 188 (213)
Q Consensus 162 -------~G~~~----------p~~~Il~~A~e~~aDLIVmG~~ 188 (213)
.+... -...--++|++++++-||.|--
T Consensus 74 ~~~~~i~~~~~~~~~ci~ckr~M~r~A~~ia~~~ga~~IvTGEs 117 (197)
T PF02568_consen 74 EVQKEILRGVKERNPCIDCKRFMYRIAEEIAEEEGADAIVTGES 117 (197)
T ss_dssp HHHHHHHHHS-GGGHHHHHHHHHHHHHHHHHHHTT--EEE----
T ss_pred HHHHHHHhcCCccchhHHHHHHHHHHHHHHHHHCCCCEEEeCch
Confidence 11000 1122236778999999999873
No 188
>KOG1650 consensus Predicted K+/H+-antiporter [Inorganic ion transport and metabolism]
Probab=38.32 E-value=1.2e+02 Score=30.48 Aligned_cols=38 Identities=16% Similarity=0.121 Sum_probs=30.5
Q ss_pred CCcEEEEeeCCCCCCCHHHHHHHHHHHHHHhhcCCEEEEEEEe
Q 028129 83 FKHLLLPITDQNPYLSEGTRQAAATTAALAKKYGADITVVVID 125 (213)
Q Consensus 83 ~k~ILV~vD~~~~~~S~~s~~Al~~A~~LA~~~~a~L~ll~V~ 125 (213)
..+|.+-.= |....++|+.++..++...+..++++...
T Consensus 614 ~~~v~~lF~-----GG~DDrEALa~~~rm~~~~~v~lTVirf~ 651 (769)
T KOG1650|consen 614 SYKVVVLFL-----GGKDDREALALAKRMAENPRVTLTVIRFF 651 (769)
T ss_pred eeEEEEEec-----CChhhHHHHHHHHHHhhCCceEEEEEEee
Confidence 346666666 78889999999999999989999999443
No 189
>COG0151 PurD Phosphoribosylamine-glycine ligase [Nucleotide transport and metabolism]
Probab=38.28 E-value=30 Score=32.03 Aligned_cols=23 Identities=35% Similarity=0.433 Sum_probs=20.6
Q ss_pred hHHHHHHHHHHcCCcEEEEcccC
Q 028129 167 PTAIIGDVADELNLDLVIISMEA 189 (213)
Q Consensus 167 p~~~Il~~A~e~~aDLIVmG~~g 189 (213)
-.+.|+++|+++++||+|+|-..
T Consensus 51 ~~~~lv~fA~~~~idl~vVGPE~ 73 (428)
T COG0151 51 DHEALVAFAKEKNVDLVVVGPEA 73 (428)
T ss_pred CHHHHHHHHHHcCCCEEEECCcH
Confidence 36899999999999999999864
No 190
>PF00148 Oxidored_nitro: Nitrogenase component 1 type Oxidoreductase; InterPro: IPR000510 Enzymes belonging to this family include cofactor-requiring nitrogenases and protochlorophyllide reductase. The key enzymatic reactions in nitrogen fixation are catalysed by the nitrogenase complex, which has two components, the iron protein (component 2), and a component (component 1) which is either a molybdenum-iron, vanadium-iron or iron-iron protein. The enzyme (1.18.6.1 from EC) forms a hexamer of two alpha, two beta and two delta chains. Protochlorophyllide reductase (1.3.1.33 from EC) is involved in the light-dependent accumulation of chlorophyll, probably at the step of reduction of protochlorophyllide to chlorophyllide.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QH1_C 1QH8_A 1H1L_C 1QGU_A 3AEK_C 3AET_C 3AER_C 3AEU_A 3AES_C 3AEQ_C ....
Probab=38.19 E-value=2.9e+02 Score=24.62 Aligned_cols=81 Identities=21% Similarity=0.272 Sum_probs=49.8
Q ss_pred CCcEEEEeeCCCCCCCHHHHHHHHHHHHHHhhcCCEEEEEEEeCCCCCChhhHHHHHHHHHHHHHhCCCCceeEEEEEcc
Q 028129 83 FKHLLLPITDQNPYLSEGTRQAAATTAALAKKYGADITVVVIDERQKESLPEHENRLSSIRWHLSEGGFQEFRLLERLGE 162 (213)
Q Consensus 83 ~k~ILV~vD~~~~~~S~~s~~Al~~A~~LA~~~~a~L~ll~V~~~~~~~~~~~~~~l~~~~~~l~~~g~~~~~v~~~v~~ 162 (213)
-++|+|..| ...++..+..|. ..|.++..+...... ....+++.+.+.+.... ...
T Consensus 271 g~~v~i~~~---------~~~~~~l~~~L~-elG~~v~~v~~~~~~-------~~~~e~~~~~~~~~~~~-----v~~-- 326 (398)
T PF00148_consen 271 GKRVAIYGD---------PDRALGLARFLE-ELGMEVVAVGCDDKS-------PEDEERLRWLLEESDPE-----VII-- 326 (398)
T ss_dssp T-EEEEESS---------HHHHHHHHHHHH-HTT-EEEEEEESSGG-------HHHHHHHHHHHHTTCSE-----EEE--
T ss_pred CceEEEEcC---------chhHHHHHHHHH-HcCCeEEEEEEccCc-------hhHHHHHHHHhhCCCcE-----EEe--
Confidence 367888666 356677776676 789888888776542 12224555555554222 222
Q ss_pred cCCchHHHHHHHHHHcCCcEEEEcccC
Q 028129 163 GSSKPTAIIGDVADELNLDLVIISMEA 189 (213)
Q Consensus 163 G~~~p~~~Il~~A~e~~aDLIVmG~~g 189 (213)
+. -..++.+..++.++||++-+.+.
T Consensus 327 ~~--~~~~~~~~l~~~~pdl~ig~~~~ 351 (398)
T PF00148_consen 327 DP--DPEEIEELLEELKPDLLIGSSHE 351 (398)
T ss_dssp SC--BHHHHHHHHHHHT-SEEEESHHH
T ss_pred CC--CHHHHHHHHHhcCCCEEEechhh
Confidence 33 34789999999999999877653
No 191
>PRK02929 L-arabinose isomerase; Provisional
Probab=37.74 E-value=3.6e+02 Score=25.58 Aligned_cols=45 Identities=24% Similarity=0.056 Sum_probs=29.0
Q ss_pred hHHHHHHHHHHcC----CcEEEEcccCCCCCCchHHHHHhcCCCcEEEEc
Q 028129 167 PTAIIGDVADELN----LDLVIISMEAIHSKHVDANLLAEFIPCPVLLLP 212 (213)
Q Consensus 167 p~~~Il~~A~e~~----aDLIVmG~~g~~~~Gs~~~~vl~~a~cPVLvVp 212 (213)
-.++|.++.++.+ +|.||+-.+.- .....-..+++...+|||+.-
T Consensus 56 ~~~~i~~~~~~~~~~~~~dgvi~~m~TF-s~a~~~i~~~~~l~~PvL~~~ 104 (499)
T PRK02929 56 TPDEITAVCREANYDDNCAGVITWMHTF-SPAKMWIRGLSALQKPLLHLH 104 (499)
T ss_pred CHHHHHHHHHHccccCCCcEEEEccCCC-chHHHHHHHHHHcCCCEEEEe
Confidence 3456666666666 89999887753 112223334888899998763
No 192
>PRK06372 translation initiation factor IF-2B subunit delta; Provisional
Probab=37.68 E-value=1e+02 Score=26.52 Aligned_cols=59 Identities=19% Similarity=0.230 Sum_probs=36.3
Q ss_pred HHHHHHHhCCCCceeEEEEEcccCCchHHHHHHHHHHcCCcEEEEcccCCCCC-------CchHH-HHHhcCCCcEEEE
Q 028129 141 SIRWHLSEGGFQEFRLLERLGEGSSKPTAIIGDVADELNLDLVIISMEAIHSK-------HVDAN-LLAEFIPCPVLLL 211 (213)
Q Consensus 141 ~~~~~l~~~g~~~~~v~~~v~~G~~~p~~~Il~~A~e~~aDLIVmG~~g~~~~-------Gs~~~-~vl~~a~cPVLvV 211 (213)
...+.+.+.|++ +.... -.++.-+.+ ++|.+++|++.-... |+-.. +.+++..+||+++
T Consensus 125 ~~a~~L~~~GI~---vtli~-------Dsa~~~~m~--~vd~VlvGAd~V~~nG~v~nkvGT~~~Al~A~~~~vPv~V~ 191 (253)
T PRK06372 125 DMAKLLVKSGID---VVLLT-------DASMCEAVL--NVDAVIVGSDSVLYDGGLIHKNGTFPLALCARYLKKPFYSL 191 (253)
T ss_pred HHHHHHHHCCCC---EEEEe-------hhHHHHHHH--hCCEEEECccEEecCCCEeehhhHHHHHHHHHHcCCCEEEE
Confidence 345677888988 64222 122333333 399999999764223 33322 2379999999986
No 193
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=37.59 E-value=1.8e+02 Score=25.26 Aligned_cols=62 Identities=13% Similarity=0.042 Sum_probs=38.4
Q ss_pred HHHhCCCCceeEEEEEcccCCchHHHHHHHHHHcCCcEEEEcccCCCC-CCchH-----HHHHhcCCCcEEE
Q 028129 145 HLSEGGFQEFRLLERLGEGSSKPTAIIGDVADELNLDLVIISMEAIHS-KHVDA-----NLLAEFIPCPVLL 210 (213)
Q Consensus 145 ~l~~~g~~~~~v~~~v~~G~~~p~~~Il~~A~e~~aDLIVmG~~g~~~-~Gs~~-----~~vl~~a~cPVLv 210 (213)
...+.++. +-..-..+. .-..+|++.|++.+..+|+..+.+... .|... ...++++.+||.+
T Consensus 12 ~A~~~~ya---V~Afn~~n~-e~~~avi~aAe~~~~Pvii~~~~~~~~~~~~~~~~~~~~~~a~~~~vpv~l 79 (281)
T PRK06806 12 KANQENYG---VGAFSVANM-EMVMGAIKAAEELNSPIILQIAEVRLNHSPLHLIGPLMVAAAKQAKVPVAV 79 (281)
T ss_pred HHHHCCce---EEEEEeCCH-HHHHHHHHHHHHhCCCEEEEcCcchhccCChHHHHHHHHHHHHHCCCCEEE
Confidence 34444444 444333333 477899999999999999998765311 23222 1237888899865
No 194
>PF00793 DAHP_synth_1: DAHP synthetase I family; InterPro: IPR006218 Members of the 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthetase family catalyse the first step in aromatic amino acid biosynthesis from chorismate. Class I includes bacterial and yeast enzymes; class II includes higher plants and various microorganisms (see IPR002480 from INTERPRO) []. The first step in the common pathway leading to the biosynthesis of aromatic compounds is the stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP). This reaction is catalyzed by DAHP synthase, a metal-activated enzyme, which in microorganisms is the target for negative-feedback regulation by pathway intermediates or by end products. In Escherichia coli there are three DAHP synthetase isoforms, each specifically inhibited by one of the three aromatic amino acids. The crystal structure of the phenylalanine-regulated form of DAHP synthetase shows the fold as is a (beta/alpha)8 barrel with several additional beta strands and alpha helices []. ; GO: 0009058 biosynthetic process; PDB: 3FS2_B 3STF_B 3FYP_D 3QQ1_A 3QPZ_C 3FYO_D 3STC_A 2QKF_D 3STE_C 3QQ0_A ....
Probab=37.01 E-value=2.8e+02 Score=24.01 Aligned_cols=100 Identities=16% Similarity=0.088 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHHHhh---cCCEEEEE-EEe--CC--CCCChh--hHHHHHHHHHHHHHhCCCCceeEEEEEcccCCchH
Q 028129 99 EGTRQAAATTAALAKK---YGADITVV-VID--ER--QKESLP--EHENRLSSIRWHLSEGGFQEFRLLERLGEGSSKPT 168 (213)
Q Consensus 99 ~~s~~Al~~A~~LA~~---~~a~L~ll-~V~--~~--~~~~~~--~~~~~l~~~~~~l~~~g~~~~~v~~~v~~G~~~p~ 168 (213)
+.-+.++++|..|+.. .+.++.++ -++ ++ ...++. -.+..++...+.....|+. +...+.+-
T Consensus 27 es~e~~~~~A~~l~~~~~~~~~~i~~~~~~~~~KpRts~~~f~G~g~d~~L~~l~~v~~~~glp---v~tEv~~~----- 98 (270)
T PF00793_consen 27 ESEEQALEYAERLKELGEKLGDRIPLRMRAYFEKPRTSPYSFQGLGLDPGLDILSEVKEGLGLP---VATEVLDP----- 98 (270)
T ss_dssp S-HHHHHHHHHHHHHHHHHHTTTEEEEEEECSC-TTSSTTST-CSTHHHHHHHHHHHHHHHT-E---EEEEESSG-----
T ss_pred CCHHHHHHHHHHHHHhhhhcCcceEEEEEEEecCCccCCCCCCCCCCCccchhHHHHHhhhCCe---eeEEecCc-----
Confidence 4456677777776543 34446555 444 33 112221 1222233333333333887 77666432
Q ss_pred HHHHHHHHHcCCcEEEEcccCCCCCCchHHHHHhcCCCcEEE
Q 028129 169 AIIGDVADELNLDLVIISMEAIHSKHVDANLLAEFIPCPVLL 210 (213)
Q Consensus 169 ~~Il~~A~e~~aDLIVmG~~g~~~~Gs~~~~vl~~a~cPVLv 210 (213)
.-.+++.+. +|++-+|++.- .--.....+.+.++||.+
T Consensus 99 -~~~~~~~d~-vd~lqIgAr~~--~n~~ll~~as~~~~pV~~ 136 (270)
T PF00793_consen 99 -EQAEYVADL-VDWLQIGARLM--ENQDLLEAASGTGKPVGF 136 (270)
T ss_dssp -GGHHHHHTT-ESEEEE-GGGT--TCHHHHHHHHCTSSEEEE
T ss_pred -ccHHHHHhc-CcEEEECcchh--cCHHHHHHhccCCCeEEe
Confidence 223445554 89999999864 323334457889999986
No 195
>cd03364 TOPRIM_DnaG_primases TOPRIM_DnaG_primases: The topoisomerase-primase (TORPIM) nucleotidyl transferase/hydrolase domain found in the active site regions of proteins similar to Escherichia coli DnaG. Primases synthesize RNA primers for the initiation of DNA replication. DnaG type primases are often closely associated with DNA helicases in primosome assemblies. The TOPRIM domain has two conserved motifs, one of which centers at a conserved glutamate and the other one at two conserved aspartates (DxD). This glutamate and two aspartates, cluster together to form a highly acid surface patch. The conserved glutamate may act as a general base in nucleotide polymerization by primases. The DXD motif may co-ordinate Mg2+, a cofactor required for full catalytic function. E. coli DnaG is a single subunit enzyme.
Probab=36.94 E-value=1.3e+02 Score=20.38 Aligned_cols=35 Identities=26% Similarity=0.341 Sum_probs=24.2
Q ss_pred CCcEEEEeeCCCCCCCHHHHHHHHHHHHHHhhcCCEEEEE
Q 028129 83 FKHLLLPITDQNPYLSEGTRQAAATTAALAKKYGADITVV 122 (213)
Q Consensus 83 ~k~ILV~vD~~~~~~S~~s~~Al~~A~~LA~~~~a~L~ll 122 (213)
.++|++++| ..+...++.+...+.....|-++.++
T Consensus 43 ~~~vii~~D-----~D~aG~~a~~~~~~~l~~~g~~~~~~ 77 (79)
T cd03364 43 AKEVILAFD-----GDEAGQKAALRALELLLKLGLNVRVL 77 (79)
T ss_pred CCeEEEEEC-----CCHHHHHHHHHHHHHHHHCCCeEEEE
Confidence 488999999 46667777766666666556665543
No 196
>PRK10046 dpiA two-component response regulator DpiA; Provisional
Probab=36.78 E-value=2.3e+02 Score=22.93 Aligned_cols=42 Identities=7% Similarity=0.063 Sum_probs=21.3
Q ss_pred HHHHHHHHcCCcEEEEcccCCCCCCchHHHHHh--cCCCcEEEE
Q 028129 170 IIGDVADELNLDLVIISMEAIHSKHVDANLLAE--FIPCPVLLL 211 (213)
Q Consensus 170 ~Il~~A~e~~aDLIVmG~~g~~~~Gs~~~~vl~--~a~cPVLvV 211 (213)
+.++...+..+|+||+...-....|.....-++ ..++||+++
T Consensus 41 ~al~~~~~~~pdlvllD~~mp~~~gle~~~~l~~~~~~~~iivl 84 (225)
T PRK10046 41 QARMMIERFKPGLILLDNYLPDGRGINLLHELVQAHYPGDVVFT 84 (225)
T ss_pred HHHHHHHhcCCCEEEEeCCCCCCcHHHHHHHHHhcCCCCCEEEE
Confidence 334445566777777765433223444333333 245666654
No 197
>PRK13856 two-component response regulator VirG; Provisional
Probab=36.52 E-value=2.3e+02 Score=22.85 Aligned_cols=42 Identities=10% Similarity=0.196 Sum_probs=19.6
Q ss_pred HHHHHHHHcCCcEEEEcccCCCCCCchHHHHH-hcCCCcEEEE
Q 028129 170 IIGDVADELNLDLVIISMEAIHSKHVDANLLA-EFIPCPVLLL 211 (213)
Q Consensus 170 ~Il~~A~e~~aDLIVmG~~g~~~~Gs~~~~vl-~~a~cPVLvV 211 (213)
..++......+|+|++...-....|......+ ....+|++++
T Consensus 36 ~~~~~~~~~~~dlvi~d~~l~~~~g~~l~~~i~~~~~~pii~l 78 (241)
T PRK13856 36 QFNRVLASETVDVVVVDLNLGREDGLEIVRSLATKSDVPIIII 78 (241)
T ss_pred HHHHHHhhCCCCEEEEeCCCCCCCHHHHHHHHHhcCCCcEEEE
Confidence 34444555667777776543211233322222 2235666554
No 198
>TIGR00583 mre11 DNA repair protein (mre11). All proteins in this family for which functions are known are subunits of a nuclease complex made up of multiple proteins including MRE11 and RAD50 homologs. The functions of this nuclease complex include recombinational repair and non-homolgous end joining. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). The proteins in this family are distantly related to proteins in the SbcCD complex of bacteria.
Probab=36.48 E-value=86 Score=28.88 Aligned_cols=21 Identities=14% Similarity=0.317 Sum_probs=18.9
Q ss_pred hHHHHHHHHHHcCCcEEEEcc
Q 028129 167 PTAIIGDVADELNLDLVIISM 187 (213)
Q Consensus 167 p~~~Il~~A~e~~aDLIVmG~ 187 (213)
..++|+++|.+.++|+|+++.
T Consensus 30 ~f~eil~~a~~~~vD~VLiaG 50 (405)
T TIGR00583 30 TFEEVLQIAKEQDVDMILLGG 50 (405)
T ss_pred HHHHHHHHHHHcCCCEEEECC
Confidence 558899999999999999987
No 199
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=36.48 E-value=2e+02 Score=24.47 Aligned_cols=45 Identities=9% Similarity=0.200 Sum_probs=27.8
Q ss_pred HHHHHHHHhCCCCceeEEEEEcccCCchHHHHHHHHHH----cCCcEEEEcccC
Q 028129 140 SSIRWHLSEGGFQEFRLLERLGEGSSKPTAIIGDVADE----LNLDLVIISMEA 189 (213)
Q Consensus 140 ~~~~~~l~~~g~~~~~v~~~v~~G~~~p~~~Il~~A~e----~~aDLIVmG~~g 189 (213)
+.+++.++..|+. -...+..|+ ..+.+-+...+ ..+|+|.+-+..
T Consensus 118 ~~Ar~~~~~ag~~---~~I~~~~G~--a~e~L~~l~~~~~~~~~fD~iFiDadK 166 (247)
T PLN02589 118 ELGLPVIQKAGVA---HKIDFREGP--ALPVLDQMIEDGKYHGTFDFIFVDADK 166 (247)
T ss_pred HHHHHHHHHCCCC---CceEEEecc--HHHHHHHHHhccccCCcccEEEecCCH
Confidence 4445566777765 222455685 66766665543 478999986643
No 200
>TIGR00250 RNAse_H_YqgF RNAse H-fold protein YqgF. This protein family, which exhibits an RNAse H fold in crystal structure, has been proposed as a putative Holliday junction resolvase, an alternate to RuvC.
Probab=36.47 E-value=95 Score=23.70 Aligned_cols=44 Identities=18% Similarity=0.239 Sum_probs=29.5
Q ss_pred hHHHHHHHHHHcCCcEEEEcccCCCCCCch---H-------HHHHhcCCCcEEEE
Q 028129 167 PTAIIGDVADELNLDLVIISMEAIHSKHVD---A-------NLLAEFIPCPVLLL 211 (213)
Q Consensus 167 p~~~Il~~A~e~~aDLIVmG~~g~~~~Gs~---~-------~~vl~~a~cPVLvV 211 (213)
..+.|.++.++++++.||+|-.-. ..|.. + ..+..+.++||.++
T Consensus 36 ~~~~l~~~i~~~~~~~iVvGlP~~-~dG~~~~~a~~v~~f~~~L~~~~~~~v~~~ 89 (130)
T TIGR00250 36 DWSRIEELLKEWTPDKIVVGLPLN-MDGTEGPLTERAQKFANRLEGRFGVPVVLW 89 (130)
T ss_pred HHHHHHHHHHHcCCCEEEEeccCC-CCcCcCHHHHHHHHHHHHHHHHhCCCEEEE
Confidence 578899999999999999996432 12221 1 12244457888765
No 201
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=36.30 E-value=2e+02 Score=24.59 Aligned_cols=45 Identities=20% Similarity=0.269 Sum_probs=30.6
Q ss_pred hHHHHHHHHHHcCCcEEEEcccCCCCCCchHHHH---Hh-cCCCcEEEEc
Q 028129 167 PTAIIGDVADELNLDLVIISMEAIHSKHVDANLL---AE-FIPCPVLLLP 212 (213)
Q Consensus 167 p~~~Il~~A~e~~aDLIVmG~~g~~~~Gs~~~~v---l~-~a~cPVLvVp 212 (213)
...+|.+.+.+-+.|.|++|.... ........+ ++ +.+.||++.|
T Consensus 29 ~~~ei~~~~~~~GTDaImIGGS~g-vt~~~~~~~v~~ik~~~~lPvilfP 77 (240)
T COG1646 29 EADEIAEAAAEAGTDAIMIGGSDG-VTEENVDNVVEAIKERTDLPVILFP 77 (240)
T ss_pred ccHHHHHHHHHcCCCEEEECCccc-ccHHHHHHHHHHHHhhcCCCEEEec
Confidence 446899999999999999987531 122222222 55 8899998865
No 202
>PF10649 DUF2478: Protein of unknown function (DUF2478); InterPro: IPR018912 This is a family of hypothetical bacterial proteins encoded in the vicinity of molybdenum ABC transporter gene-products MobA, MobB and MobC. However the function could not be confirmed.
Probab=36.20 E-value=74 Score=25.47 Aligned_cols=42 Identities=19% Similarity=0.088 Sum_probs=29.4
Q ss_pred HHHHHHHHcCCcEEEEcccCCCC---CCchHHHH-HhcCCCcEEEE
Q 028129 170 IIGDVADELNLDLVIISMEAIHS---KHVDANLL-AEFIPCPVLLL 211 (213)
Q Consensus 170 ~Il~~A~e~~aDLIVmG~~g~~~---~Gs~~~~v-l~~a~cPVLvV 211 (213)
..++.+=+.++||+|+...|+.+ .|+...+. +-.+.+|||+.
T Consensus 84 ~~l~~al~~~~DLlivNkFGk~Ea~G~Glr~~i~~A~~~giPVLt~ 129 (159)
T PF10649_consen 84 AALRRALAEGADLLIVNKFGKQEAEGRGLRDEIAAALAAGIPVLTA 129 (159)
T ss_pred HHHHHHHhcCCCEEEEcccHHhhhcCCCHHHHHHHHHHCCCCEEEE
Confidence 34455556689999999877632 36665554 78889999863
No 203
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=36.08 E-value=2.6e+02 Score=23.34 Aligned_cols=46 Identities=15% Similarity=0.195 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHhCCCCceeEEEEEcccCCchHHHHHHHHHHcCCcEEEEccc
Q 028129 137 NRLSSIRWHLSEGGFQEFRLLERLGEGSSKPTAIIGDVADELNLDLVIISME 188 (213)
Q Consensus 137 ~~l~~~~~~l~~~g~~~~~v~~~v~~G~~~p~~~Il~~A~e~~aDLIVmG~~ 188 (213)
+.+.++++...+.+.. +...+..|- ..+=+....+.++|.+|+|+.
T Consensus 152 ekI~~l~~~~~~~~~~---~~I~vdGGI---~~eni~~l~~aGAd~vVvGSa 197 (220)
T PRK08883 152 DKLRAVRKMIDESGRD---IRLEIDGGV---KVDNIREIAEAGADMFVAGSA 197 (220)
T ss_pred HHHHHHHHHHHhcCCC---eeEEEECCC---CHHHHHHHHHcCCCEEEEeHH
Confidence 3445555555555554 554555554 344444455679999999984
No 204
>PRK10161 transcriptional regulator PhoB; Provisional
Probab=35.97 E-value=2.2e+02 Score=22.49 Aligned_cols=43 Identities=14% Similarity=0.055 Sum_probs=25.3
Q ss_pred HHHHHHHHHcCCcEEEEcccCCCCCCchHHHHHhc----CCCcEEEE
Q 028129 169 AIIGDVADELNLDLVIISMEAIHSKHVDANLLAEF----IPCPVLLL 211 (213)
Q Consensus 169 ~~Il~~A~e~~aDLIVmG~~g~~~~Gs~~~~vl~~----a~cPVLvV 211 (213)
+..++...+..+|+|++...-....|......+++ ..+||+++
T Consensus 36 ~~~~~~~~~~~~dlvild~~l~~~~g~~~~~~l~~~~~~~~~pvi~l 82 (229)
T PRK10161 36 DSAVNQLNEPWPDLILLDWMLPGGSGIQFIKHLKRESMTRDIPVVML 82 (229)
T ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHhccccCCCCEEEE
Confidence 34444556678999999875432234444444443 35788775
No 205
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=35.96 E-value=1.8e+02 Score=25.54 Aligned_cols=61 Identities=10% Similarity=0.154 Sum_probs=38.9
Q ss_pred HHhCCCCceeEEEEEcccCCchHHHHHHHHHHcCCcEEEEcccCCCC-CCchH-----HHHHhcCCCcEEE
Q 028129 146 LSEGGFQEFRLLERLGEGSSKPTAIIGDVADELNLDLVIISMEAIHS-KHVDA-----NLLAEFIPCPVLL 210 (213)
Q Consensus 146 l~~~g~~~~~v~~~v~~G~~~p~~~Il~~A~e~~aDLIVmG~~g~~~-~Gs~~-----~~vl~~a~cPVLv 210 (213)
..+.++. +-..-..+. .-..++++.|++.+..+|+..+.+... .|... ..+++++++||.+
T Consensus 13 A~~~~yA---V~AfN~~n~-e~~~avi~AAee~~sPvIlq~s~~~~~~~~~~~~~~~~~~~a~~~~VPVal 79 (286)
T PRK12738 13 AQANGYA---VPAFNIHNA-ETIQAILEVCSEMRSPVILAGTPGTFKHIALEEIYALCSAYSTTYNMPLAL 79 (286)
T ss_pred HHHCCce---EEEEEeCCH-HHHHHHHHHHHHHCCCEEEEcCcchhhhCCHHHHHHHHHHHHHHCCCCEEE
Confidence 3444444 544333333 578999999999999999997765311 13222 1238889999975
No 206
>PRK11083 DNA-binding response regulator CreB; Provisional
Probab=35.85 E-value=2.1e+02 Score=22.29 Aligned_cols=42 Identities=19% Similarity=0.082 Sum_probs=24.0
Q ss_pred HHHHHHHHcCCcEEEEcccCCCCCCchHHHHHhc--CCCcEEEE
Q 028129 170 IIGDVADELNLDLVIISMEAIHSKHVDANLLAEF--IPCPVLLL 211 (213)
Q Consensus 170 ~Il~~A~e~~aDLIVmG~~g~~~~Gs~~~~vl~~--a~cPVLvV 211 (213)
..++...+..+|+|++...-....|.....-++. ..+|++++
T Consensus 38 ~~~~~~~~~~~dlvl~d~~~~~~~g~~~~~~l~~~~~~~~ii~l 81 (228)
T PRK11083 38 PALDKLRQQPPDLVILDVGLPDISGFELCRQLLAFHPALPVIFL 81 (228)
T ss_pred HHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHhhCCCCCEEEE
Confidence 3344556677999999775432234443333332 46788765
No 207
>PRK15347 two component system sensor kinase SsrA; Provisional
Probab=35.69 E-value=2e+02 Score=28.58 Aligned_cols=63 Identities=19% Similarity=0.201 Sum_probs=36.5
Q ss_pred HHHHHHHHhCCCCceeEEEEEcccCCchHHHHHHHHHHcCCcEEEEcccCCCCCCchHHHHHhc------CCCcEEEE
Q 028129 140 SSIRWHLSEGGFQEFRLLERLGEGSSKPTAIIGDVADELNLDLVIISMEAIHSKHVDANLLAEF------IPCPVLLL 211 (213)
Q Consensus 140 ~~~~~~l~~~g~~~~~v~~~v~~G~~~p~~~Il~~A~e~~aDLIVmG~~g~~~~Gs~~~~vl~~------a~cPVLvV 211 (213)
+.+...+...|+. +.. ... ..+ -++..++..+|+|+|...-....|......++. ..+||+++
T Consensus 704 ~~l~~~L~~~g~~---v~~-a~~----~~~-al~~~~~~~~dlil~D~~mp~~~G~~~~~~ir~~~~~~~~~~pii~l 772 (921)
T PRK15347 704 DIIGMMLVELGQQ---VTT-AAS----GTE-ALELGRQHRFDLVLMDIRMPGLDGLETTQLWRDDPNNLDPDCMIVAL 772 (921)
T ss_pred HHHHHHHHHcCCE---EEE-ECC----HHH-HHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHhchhhcCCCCcEEEE
Confidence 3444456666765 543 322 333 345567788999999875432346555544443 45788775
No 208
>cd08185 Fe-ADH1 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases-like (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase fold and is a member of the iron-containing alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown. They are present in bacteria and archaea.
Probab=35.58 E-value=3.3e+02 Score=24.41 Aligned_cols=47 Identities=17% Similarity=0.131 Sum_probs=26.9
Q ss_pred HHHHHHHHHHhCCCCceeEEEE-EcccC--CchHHHHHHHHHHcCCcEEE-Ecc
Q 028129 138 RLSSIRWHLSEGGFQEFRLLER-LGEGS--SKPTAIIGDVADELNLDLVI-ISM 187 (213)
Q Consensus 138 ~l~~~~~~l~~~g~~~~~v~~~-v~~G~--~~p~~~Il~~A~e~~aDLIV-mG~ 187 (213)
..+++.+.+.+.|++ +... -+.++ .+-.+.+.+.+++.++|.|| +|.
T Consensus 42 ~~~~v~~~L~~~~~~---~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IiavGG 92 (380)
T cd08185 42 YLDRVIELLKQAGVE---VVVFDKVEPNPTTTTVMEGAALAREEGCDFVVGLGG 92 (380)
T ss_pred HHHHHHHHHHHcCCe---EEEeCCccCCCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 345566666666776 3322 11222 02345666778888999988 554
No 209
>PRK06801 hypothetical protein; Provisional
Probab=35.58 E-value=1.9e+02 Score=25.28 Aligned_cols=62 Identities=18% Similarity=0.093 Sum_probs=39.2
Q ss_pred HHHhCCCCceeEEEEEcccCCchHHHHHHHHHHcCCcEEEEcccCCCC-CCchH-----HHHHhcCCCcEEE
Q 028129 145 HLSEGGFQEFRLLERLGEGSSKPTAIIGDVADELNLDLVIISMEAIHS-KHVDA-----NLLAEFIPCPVLL 210 (213)
Q Consensus 145 ~l~~~g~~~~~v~~~v~~G~~~p~~~Il~~A~e~~aDLIVmG~~g~~~-~Gs~~-----~~vl~~a~cPVLv 210 (213)
...+.++. +-..-.... .-..+|++.|++.+..+|+..+.+... .|... ..+++++.+||.+
T Consensus 12 ~A~~~~ya---V~Afn~~n~-e~~~avi~AAe~~~~PvIl~~~~~~~~~~~~~~~~~~~~~~a~~~~vpV~l 79 (286)
T PRK06801 12 HARKHGYA---LGAFNVLDS-HFLRALFAAAKQERSPFIINIAEVHFKYISLESLVEAVKFEAARHDIPVVL 79 (286)
T ss_pred HHHHCCce---EEEEeeCCH-HHHHHHHHHHHHHCCCEEEEeCcchhhcCCHHHHHHHHHHHHHHCCCCEEE
Confidence 34444444 444333333 478899999999999999998876421 13221 1238889999865
No 210
>cd01971 Nitrogenase_VnfN_like Nitrogenase_vnfN_like: VnfN subunit of the VnfEN complex-like. This group in addition to VnfN contains a subset of the beta subunit of the nitrogenase MoFe protein and NifN-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protien for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=35.56 E-value=3.5e+02 Score=24.74 Aligned_cols=86 Identities=10% Similarity=0.022 Sum_probs=51.6
Q ss_pred CCcEEEEeeCCCCCCCHHHHHHHHHHHHHHhhcCCEEEEEEEeCCCCCChhhHHHHHHHHHHHHHhCCCCceeEEEEEcc
Q 028129 83 FKHLLLPITDQNPYLSEGTRQAAATTAALAKKYGADITVVVIDERQKESLPEHENRLSSIRWHLSEGGFQEFRLLERLGE 162 (213)
Q Consensus 83 ~k~ILV~vD~~~~~~S~~s~~Al~~A~~LA~~~~a~L~ll~V~~~~~~~~~~~~~~l~~~~~~l~~~g~~~~~v~~~v~~ 162 (213)
-+++.|.-| ...++..+..|.+..|.++.++.+..... .+.+..++ +.+++.++. .+. +..
T Consensus 293 ~k~vai~~~---------~~~~~~l~~~L~~elGm~~~~~~~~~~~~---~~~~~~~~---~~~~~~~~~---~~v-~~~ 353 (427)
T cd01971 293 PRRFAVIAD---------STYALGLARFLVNELGWVPAKQVITDNPP---EKYRSAIE---NEFEAEGVS---AEV-VFS 353 (427)
T ss_pred CceEEEECC---------hHHHHHHHHHHHHhcCCceEEEEecCCCC---HHHHHHHH---HHHHhcCCC---CcE-EEe
Confidence 377877777 34777788778878899888776654321 12222222 223344554 332 222
Q ss_pred cCCchHHHHHHHHHHcC----CcEEEEcccCC
Q 028129 163 GSSKPTAIIGDVADELN----LDLVIISMEAI 190 (213)
Q Consensus 163 G~~~p~~~Il~~A~e~~----aDLIVmG~~g~ 190 (213)
++ .. +|.+.+++.+ +|||+=+++++
T Consensus 354 ~D--~~-~~~~~i~~~~~~~~~dliig~s~~~ 382 (427)
T cd01971 354 ED--GY-AIGQSLRQSDFKYKPPIIFGSSWER 382 (427)
T ss_pred cC--HH-HHHHHHHhCCCCCCCCEEEechHHH
Confidence 33 44 7888777765 99998877765
No 211
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=35.53 E-value=2.9e+02 Score=23.74 Aligned_cols=43 Identities=12% Similarity=0.189 Sum_probs=28.0
Q ss_pred HHHHHHHHHcCCcEEEEcccCCCC---CCchHHH--HHhcC-CCcEEEE
Q 028129 169 AIIGDVADELNLDLVIISMEAIHS---KHVDANL--LAEFI-PCPVLLL 211 (213)
Q Consensus 169 ~~Il~~A~e~~aDLIVmG~~g~~~---~Gs~~~~--vl~~a-~cPVLvV 211 (213)
.+..++|++.++|-|++....... .+....+ ++..+ ++||++.
T Consensus 86 i~~a~~a~~~Gad~v~~~~P~y~~~~~~~i~~~~~~v~~a~~~lpi~iY 134 (288)
T cd00954 86 QELAKHAEELGYDAISAITPFYYKFSFEEIKDYYREIIAAAASLPMIIY 134 (288)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCCEEEE
Confidence 455578999999999987754311 1222222 36778 7999875
No 212
>PF00532 Peripla_BP_1: Periplasmic binding proteins and sugar binding domain of LacI family; InterPro: IPR001761 This family includes the periplasmic binding proteins, and the LacI family transcriptional regulators. The periplasmic binding proteins are the primary receptors for chemotaxis and transport of many sugar based solutes. The LacI family of proteins consist of transcriptional regulators related to the lac repressor. In this case, generally the sugar binding domain binds a sugar which changes the DNA binding activity of the repressor domain (lacI) [, ].; PDB: 1BAP_A 7ABP_A 6ABP_A 1ABF_A 5ABP_A 2WRZ_B 9ABP_A 1APB_A 1ABE_A 8ABP_A ....
Probab=35.51 E-value=2.8e+02 Score=23.54 Aligned_cols=75 Identities=8% Similarity=0.046 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHhhcCCEEEEEEEeCCCCCChhhHHHHHHHHHHHHHhCCCCceeEEEEEcccCCchHHHHHHHHHHc
Q 028129 99 EGTRQAAATTAALAKKYGADITVVVIDERQKESLPEHENRLSSIRWHLSEGGFQEFRLLERLGEGSSKPTAIIGDVADEL 178 (213)
Q Consensus 99 ~~s~~Al~~A~~LA~~~~a~L~ll~V~~~~~~~~~~~~~~l~~~~~~l~~~g~~~~~v~~~v~~G~~~p~~~Il~~A~e~ 178 (213)
+.-.+.+....+.+++.|-.+.++..... .+.. +..+.+.+..++. +. ...... -.+.|..+.+.
T Consensus 14 pff~~ii~gIe~~a~~~Gy~l~l~~t~~~-------~~~e--~~i~~l~~~~vDG--iI-~~s~~~--~~~~l~~~~~~- 78 (279)
T PF00532_consen 14 PFFAEIIRGIEQEAREHGYQLLLCNTGDD-------EEKE--EYIELLLQRRVDG--II-LASSEN--DDEELRRLIKS- 78 (279)
T ss_dssp HHHHHHHHHHHHHHHHTTCEEEEEEETTT-------HHHH--HHHHHHHHTTSSE--EE-EESSSC--TCHHHHHHHHT-
T ss_pred cHHHHHHHHHHHHHHHcCCEEEEecCCCc-------hHHH--HHHHHHHhcCCCE--EE-EecccC--ChHHHHHHHHc-
Confidence 33445555555566666666655444331 1111 2223344444542 21 111111 23556666555
Q ss_pred CCcEEEEccc
Q 028129 179 NLDLVIISME 188 (213)
Q Consensus 179 ~aDLIVmG~~ 188 (213)
+.=+|+++..
T Consensus 79 ~iPvV~~~~~ 88 (279)
T PF00532_consen 79 GIPVVLIDRY 88 (279)
T ss_dssp TSEEEEESS-
T ss_pred CCCEEEEEec
Confidence 6666666665
No 213
>COG4126 Hydantoin racemase [Amino acid transport and metabolism]
Probab=35.41 E-value=1.9e+02 Score=24.62 Aligned_cols=39 Identities=15% Similarity=0.233 Sum_probs=26.3
Q ss_pred hHHHHHHHHHHcCCcEEEEcccCCCCCCchHHHHHhcCCCcE
Q 028129 167 PTAIIGDVADELNLDLVIISMEAIHSKHVDANLLAEFIPCPV 208 (213)
Q Consensus 167 p~~~Il~~A~e~~aDLIVmG~~g~~~~Gs~~~~vl~~a~cPV 208 (213)
...++.+..++.++|.||+|.-|. +++ ...+-....+||
T Consensus 162 l~~~~~~a~~edgAeaIiLGCAGm--s~l-a~~Lq~~~gvPV 200 (230)
T COG4126 162 LVIEAAEALKEDGAEAIILGCAGM--SDL-ADQLQKAFGVPV 200 (230)
T ss_pred HHHHHHHHhhhcCCCEEEEcCccH--HHH-HHHHHHHhCCCc
Confidence 345666777888999999999886 433 444444444555
No 214
>cd03557 L-arabinose_isomerase L-Arabinose isomerase (AI) catalyzes the isomerization of L-arabinose to L-ribulose, the first reaction in its conversion into D-xylulose-5-phosphate, an intermediate in the pentose phosphate pathway, which allows L-arabinose to be used as a carbon source. AI can also convert D-galactose to D-tagatose at elevated temperatures in the presence of divalent metal ions. D-tagatose, rarely found in nature, is of commercial interest as a low-calorie sugar substitute.
Probab=35.41 E-value=2.4e+02 Score=26.71 Aligned_cols=45 Identities=24% Similarity=0.036 Sum_probs=28.0
Q ss_pred hHHHHHHHHHHc----CCcEEEEcccCCCCCCchHHHHHhcCCCcEEEEc
Q 028129 167 PTAIIGDVADEL----NLDLVIISMEAIHSKHVDANLLAEFIPCPVLLLP 212 (213)
Q Consensus 167 p~~~Il~~A~e~----~aDLIVmG~~g~~~~Gs~~~~vl~~a~cPVLvVp 212 (213)
-.+.|.+..++. ++|.||+-.+.- .....-..+++...+|||+.-
T Consensus 50 ~~~~i~~~~~~~~~~~~~dgvi~~m~TF-s~a~~~i~~~~~l~~PvL~~~ 98 (484)
T cd03557 50 TPDEILAVCREANADDNCAGVITWMHTF-SPAKMWIAGLTALQKPLLHLH 98 (484)
T ss_pred CHHHHHHHHHHccccCCccEEEEccCCC-chHHHHHHHHHHcCCCEEEEc
Confidence 345666666664 489988877753 112222334788899998763
No 215
>PRK11107 hybrid sensory histidine kinase BarA; Provisional
Probab=35.12 E-value=2.6e+02 Score=27.69 Aligned_cols=62 Identities=15% Similarity=0.107 Sum_probs=36.9
Q ss_pred HHHHHHHhCCCCceeEEEEEcccCCchHHHHHHHHHHcCCcEEEEcccCCCCCCchHHHHHh----cCCCcEEEE
Q 028129 141 SIRWHLSEGGFQEFRLLERLGEGSSKPTAIIGDVADELNLDLVIISMEAIHSKHVDANLLAE----FIPCPVLLL 211 (213)
Q Consensus 141 ~~~~~l~~~g~~~~~v~~~v~~G~~~p~~~Il~~A~e~~aDLIVmG~~g~~~~Gs~~~~vl~----~a~cPVLvV 211 (213)
.+...+...|.. +.. .. -.++.++..++..+|+|+|...-....|......++ ...+||+++
T Consensus 682 ~l~~~L~~~~~~---v~~-~~-----~~~~al~~~~~~~~dlil~D~~mp~~~g~~~~~~lr~~~~~~~~pii~l 747 (919)
T PRK11107 682 LIGALLEEQVEH---VVL-CD-----SGHQAVEQAKQRPFDLILMDIQMPGMDGIRACELIRQLPHNQNTPIIAV 747 (919)
T ss_pred HHHHHHHHcCCE---EEE-EC-----CHHHHHHHHHhCCCCEEEEeCCCCCCcHHHHHHHHHhcccCCCCCEEEE
Confidence 344445555655 442 22 234555667788999999987543235666555554 346888875
No 216
>PF02441 Flavoprotein: Flavoprotein; InterPro: IPR003382 This entry contains a diverse range of flavoprotein enzymes, including epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN []. This enzyme catalyzes the removal of two reducing equivalents from the cysteine residue of the C-terminal meso-lanthionine of epidermin to form a --C==C-- double bond. This family also includes the B chain of dipicolinate synthase a small polar molecule that accumulates to high concentrations in bacterial endospores, and is thought to play a role in spore heat resistance, or the maintenance of heat resistance []. Dipicolinate synthase catalyses the formation of dipicolinic acid from dihydroxydipicolinic acid. This family also includes phenylacrylic acid decarboxylase 4.1.1 from EC [].; GO: 0003824 catalytic activity; PDB: 3QJG_L 1G63_G 1G5Q_L 1P3Y_1 1QZU_A 1E20_A 1MVN_A 1MVL_A 3ZQU_A 2EJB_A ....
Probab=35.11 E-value=57 Score=24.50 Aligned_cols=34 Identities=29% Similarity=0.356 Sum_probs=26.0
Q ss_pred CcEEEEeeCCCCCCCHHHHHHHHHHHHHHhhcCCEEEEEE
Q 028129 84 KHLLLPITDQNPYLSEGTRQAAATTAALAKKYGADITVVV 123 (213)
Q Consensus 84 k~ILV~vD~~~~~~S~~s~~Al~~A~~LA~~~~a~L~ll~ 123 (213)
|+|++++. |+....++.++...|.+. |.++.++.
T Consensus 1 k~i~l~vt-----Gs~~~~~~~~~l~~L~~~-g~~v~vv~ 34 (129)
T PF02441_consen 1 KRILLGVT-----GSIAAYKAPDLLRRLKRA-GWEVRVVL 34 (129)
T ss_dssp -EEEEEE------SSGGGGGHHHHHHHHHTT-TSEEEEEE
T ss_pred CEEEEEEE-----CHHHHHHHHHHHHHHhhC-CCEEEEEE
Confidence 68999999 899998988888888765 77866653
No 217
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=34.84 E-value=3e+02 Score=23.71 Aligned_cols=43 Identities=12% Similarity=0.153 Sum_probs=28.8
Q ss_pred HHHHHHHHHcCCcEEEEcccCCCC---CCchHHH--HHhcCCCcEEEE
Q 028129 169 AIIGDVADELNLDLVIISMEAIHS---KHVDANL--LAEFIPCPVLLL 211 (213)
Q Consensus 169 ~~Il~~A~e~~aDLIVmG~~g~~~---~Gs~~~~--vl~~a~cPVLvV 211 (213)
.+..++|++.++|-|++-...... .+....+ ++..++.||++.
T Consensus 89 i~~a~~a~~~Gad~v~v~~P~y~~~~~~~l~~~f~~va~a~~lPv~iY 136 (293)
T PRK04147 89 QELAKYATELGYDAISAVTPFYYPFSFEEICDYYREIIDSADNPMIVY 136 (293)
T ss_pred HHHHHHHHHcCCCEEEEeCCcCCCCCHHHHHHHHHHHHHhCCCCEEEE
Confidence 345588999999999998754311 1222222 477889999885
No 218
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=34.82 E-value=3.1e+02 Score=25.89 Aligned_cols=10 Identities=30% Similarity=0.740 Sum_probs=5.0
Q ss_pred CCcEEEEccc
Q 028129 179 NLDLVIISME 188 (213)
Q Consensus 179 ~aDLIVmG~~ 188 (213)
.+|+|+.--+
T Consensus 48 ~~~lvl~Di~ 57 (464)
T COG2204 48 PFDLVLLDIR 57 (464)
T ss_pred CCCEEEEecC
Confidence 4555555444
No 219
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=34.71 E-value=3e+02 Score=23.75 Aligned_cols=44 Identities=14% Similarity=0.104 Sum_probs=28.3
Q ss_pred hHHHHHHHHHHcCCcEEEEcccCCCCCCchHHH------HHhcC-CCcEEEE
Q 028129 167 PTAIIGDVADELNLDLVIISMEAIHSKHVDANL------LAEFI-PCPVLLL 211 (213)
Q Consensus 167 p~~~Il~~A~e~~aDLIVmG~~g~~~~Gs~~~~------vl~~a-~cPVLvV 211 (213)
-..+..++|++.++|-|++..... ...+.... ++..+ +.||++.
T Consensus 84 ~~i~la~~a~~~Gad~v~v~~P~y-~~~~~~~i~~yf~~v~~~~~~lpv~lY 134 (290)
T TIGR00683 84 EAVELGKYATELGYDCLSAVTPFY-YKFSFPEIKHYYDTIIAETGGLNMIVY 134 (290)
T ss_pred HHHHHHHHHHHhCCCEEEEeCCcC-CCCCHHHHHHHHHHHHhhCCCCCEEEE
Confidence 345566889999999999977543 12222222 24555 6999875
No 220
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=34.58 E-value=2.5e+02 Score=23.38 Aligned_cols=44 Identities=5% Similarity=0.094 Sum_probs=25.0
Q ss_pred HHHHHHHHHhCCCCceeEEEEEcccCCchHHHHHHHHHH---cCCcEEEEcc
Q 028129 139 LSSIRWHLSEGGFQEFRLLERLGEGSSKPTAIIGDVADE---LNLDLVIISM 187 (213)
Q Consensus 139 l~~~~~~l~~~g~~~~~v~~~v~~G~~~p~~~Il~~A~e---~~aDLIVmG~ 187 (213)
.+.+++.++..|+. -...+..|+ ..+.+-+...+ ..+|+|++..
T Consensus 106 ~~~A~~n~~~~gl~---~~i~~~~gd--a~~~L~~l~~~~~~~~fD~VfiDa 152 (234)
T PLN02781 106 YEVGLEFIKKAGVD---HKINFIQSD--ALSALDQLLNNDPKPEFDFAFVDA 152 (234)
T ss_pred HHHHHHHHHHcCCC---CcEEEEEcc--HHHHHHHHHhCCCCCCCCEEEECC
Confidence 34445556666765 223445575 66555554432 4689988875
No 221
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=34.55 E-value=1.8e+02 Score=25.47 Aligned_cols=62 Identities=15% Similarity=0.162 Sum_probs=39.4
Q ss_pred HHHhCCCCceeEEEEEcccCCchHHHHHHHHHHcCCcEEEEcccCCCC-CCchH-----HHHHhcCCCcEEE
Q 028129 145 HLSEGGFQEFRLLERLGEGSSKPTAIIGDVADELNLDLVIISMEAIHS-KHVDA-----NLLAEFIPCPVLL 210 (213)
Q Consensus 145 ~l~~~g~~~~~v~~~v~~G~~~p~~~Il~~A~e~~aDLIVmG~~g~~~-~Gs~~-----~~vl~~a~cPVLv 210 (213)
...+.++. +-..-..+. .-..++++.|++.+..+|+.-+.+... .|... ..+++++++||.+
T Consensus 12 ~A~~~~ya---V~AfN~~n~-e~~~avi~AAee~~sPvIiq~~~~~~~~~g~~~~~~~~~~~a~~~~VPVal 79 (284)
T PRK12737 12 KAQAEGYA---VPAFNIHNL-ETLQVVVETAAELRSPVILAGTPGTFSYAGTDYIVAIAEVAARKYNIPLAL 79 (284)
T ss_pred HHHHcCce---EEEEEeCCH-HHHHHHHHHHHHhCCCEEEEcCccHHhhCCHHHHHHHHHHHHHHCCCCEEE
Confidence 34444444 444333333 578999999999999999987765311 23321 1237889999865
No 222
>cd08193 HVD 5-hydroxyvalerate dehydrogenase (HVD) catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. 5-hydroxyvalerate dehydrogenase (HVD) is an iron-containing (type III) NAD-dependent alcohol dehydrogenase. It plays a role in the cyclopentanol metabolism biochemical pathway. It catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. This cyclopentanol (cpn) degradation pathway is present in some bacteria which can use cyclopentanol as sole carbon source. In Comamonas sp. strain NCIMB 9872, this enzyme is encoded by the CpnD gene.
Probab=34.50 E-value=2.4e+02 Score=25.20 Aligned_cols=44 Identities=16% Similarity=0.051 Sum_probs=22.9
Q ss_pred HHHHHHHHHhCCCCceeEEEE-EcccC--CchHHHHHHHHHHcCCcEEEE
Q 028129 139 LSSIRWHLSEGGFQEFRLLER-LGEGS--SKPTAIIGDVADELNLDLVII 185 (213)
Q Consensus 139 l~~~~~~l~~~g~~~~~v~~~-v~~G~--~~p~~~Il~~A~e~~aDLIVm 185 (213)
.+.+...+.+.+++ +... ..+++ .+-.+.+.+.+++.++|.||-
T Consensus 43 ~~~v~~~L~~~~~~---~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIa 89 (376)
T cd08193 43 IDPLLASLEAAGIE---VTVFDDVEADPPEAVVEAAVEAARAAGADGVIG 89 (376)
T ss_pred HHHHHHHHHHcCCe---EEEECCCCCCcCHHHHHHHHHHHHhcCCCEEEE
Confidence 34455556666665 3221 12222 012345667777888887664
No 223
>PLN02285 methionyl-tRNA formyltransferase
Probab=34.37 E-value=1.8e+02 Score=25.92 Aligned_cols=22 Identities=23% Similarity=0.084 Sum_probs=18.0
Q ss_pred HHHHHHHHHcCCcEEEEcccCC
Q 028129 169 AIIGDVADELNLDLVIISMEAI 190 (213)
Q Consensus 169 ~~Il~~A~e~~aDLIVmG~~g~ 190 (213)
+++++..++.++|+||+...++
T Consensus 83 ~~~~~~l~~~~~Dliv~~~~~~ 104 (334)
T PLN02285 83 EDFLSALRELQPDLCITAAYGN 104 (334)
T ss_pred HHHHHHHHhhCCCEEEhhHhhh
Confidence 4567778889999999998765
No 224
>PRK10674 deoxyribodipyrimidine photolyase; Provisional
Probab=34.00 E-value=3.6e+02 Score=25.10 Aligned_cols=84 Identities=13% Similarity=0.105 Sum_probs=51.3
Q ss_pred CCHHHHHHHHHHHHHHhhcCCEEEEEEEeCCCCC-----Chh---hHHHHHHHHHHHHHhCCCCceeEEEEEc--ccCCc
Q 028129 97 LSEGTRQAAATTAALAKKYGADITVVVIDERQKE-----SLP---EHENRLSSIRWHLSEGGFQEFRLLERLG--EGSSK 166 (213)
Q Consensus 97 ~S~~s~~Al~~A~~LA~~~~a~L~ll~V~~~~~~-----~~~---~~~~~l~~~~~~l~~~g~~~~~v~~~v~--~G~~~ 166 (213)
+--....||..|+..+ +..+..|.|.++... +.. -.-+.+.++...+.+.|.. ...... .|+
T Consensus 12 LRl~DN~aL~~A~~~~---~~~vlpvyv~dp~~~~~~~~~~~r~~Fl~esL~~L~~~L~~~g~~---L~v~~g~~~g~-- 83 (472)
T PRK10674 12 LRLHDNLALAAACRDP---SARVLALFIATPAQWAAHDMAPRQAAFINAQLNALQIALAEKGIP---LLFHEVDDFAA-- 83 (472)
T ss_pred CCcchHHHHHHHHhCC---CCCEEEEEEECchhhccCCCCHHHHHHHHHHHHHHHHHHHHcCCc---eEEEecCCcCC--
Confidence 4445567777775433 234777766554211 111 1223455566677777877 443332 365
Q ss_pred hHHHHHHHHHHcCCcEEEEccc
Q 028129 167 PTAIIGDVADELNLDLVIISME 188 (213)
Q Consensus 167 p~~~Il~~A~e~~aDLIVmG~~ 188 (213)
+.+.|.+.+++.+++-|+.-..
T Consensus 84 ~~~vl~~l~~~~~i~~v~~~~~ 105 (472)
T PRK10674 84 SVEWLKQFCQQHQVTHLFYNYQ 105 (472)
T ss_pred HHHHHHHHHHHcCCCEEEEecc
Confidence 9999999999999999998653
No 225
>cd08186 Fe-ADH8 Iron-containing alcohol dehydrogenase. Type III Iron-containing alcohol dehydrogenases (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. The ADH of hyperthermophilic archaeon Thermococcus hydrothermalis oxidizes a series of primary aliphatic and aromatic alcohols preferentially from C2 to C8 but is also active towards methanol and glycerol and stereospecific for monoterpenes. It was suggested that the type III ADHs in microorganisms are involved in acetaldehyde detoxication rather than in alcohol turnover.
Probab=33.86 E-value=2.7e+02 Score=25.00 Aligned_cols=43 Identities=14% Similarity=0.112 Sum_probs=23.0
Q ss_pred HHHHHHHHHhCCCCceeEEEEE-cccC--CchHHHHHHHHHHcCCcEEE
Q 028129 139 LSSIRWHLSEGGFQEFRLLERL-GEGS--SKPTAIIGDVADELNLDLVI 184 (213)
Q Consensus 139 l~~~~~~l~~~g~~~~~v~~~v-~~G~--~~p~~~Il~~A~e~~aDLIV 184 (213)
++.+...+++.|++ +.... .+.+ .+..+.+.+.+++.++|.||
T Consensus 44 ~~~v~~~L~~~gi~---~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~II 89 (383)
T cd08186 44 WDKVEPALDEHGIE---YVLYNKVTPNPTVDQVDEAAKLGREFGAQAVI 89 (383)
T ss_pred HHHHHHHHHHcCCe---EEEeCCCCCCCCHHHHHHHHHHHHHcCCCEEE
Confidence 34455556666665 33221 1111 02345677777788888877
No 226
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=33.86 E-value=1.9e+02 Score=25.28 Aligned_cols=62 Identities=10% Similarity=0.117 Sum_probs=39.4
Q ss_pred HHHhCCCCceeEEEEEcccCCchHHHHHHHHHHcCCcEEEEcccCCCC-CCchHH-----HHHhcCCCcEEE
Q 028129 145 HLSEGGFQEFRLLERLGEGSSKPTAIIGDVADELNLDLVIISMEAIHS-KHVDAN-----LLAEFIPCPVLL 210 (213)
Q Consensus 145 ~l~~~g~~~~~v~~~v~~G~~~p~~~Il~~A~e~~aDLIVmG~~g~~~-~Gs~~~-----~vl~~a~cPVLv 210 (213)
...+.++. +-..-..+. .-..+|++.|++.+..+|+..+.+... .|.... .+++++.+||.+
T Consensus 10 ~A~~~~yA---V~AfN~~n~-e~~~avi~AAee~~sPvIlq~s~~~~~~~~~~~~~~~~~~~a~~~~VPVal 77 (282)
T TIGR01858 10 DAQAGGYA---VPAFNIHNL-ETIQAVVETAAEMRSPVILAGTPGTFKHAGTEYIVALCSAASTTYNMPLAL 77 (282)
T ss_pred HHHHcCCe---EEEEEeCCH-HHHHHHHHHHHHhCCCEEEEeCccHHhhCCHHHHHHHHHHHHHHCCCCEEE
Confidence 34444444 444333333 578999999999999999998865311 132211 238889999875
No 227
>cd08187 BDH Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. The butanol dehydrogenase (BDH) is involved in the final step of the butanol formation pathway in anaerobic micro-organism. Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. Activity in the reverse direction was 50-fold lower than that in the forward direction. The NADH-BDH had higher activity with longer chained aldehydes and was inhibited by metabolites containing an adenine moiety. This protein family belongs to the so-called iron-containing alcohol dehydrogenase superfamily. Since members of this superfamily use different divalent ions, preferentially iron or zinc, it has been suggested to be renamed to family III metal-dependent polyol dehydrogenases.
Probab=33.75 E-value=3e+02 Score=24.74 Aligned_cols=46 Identities=15% Similarity=0.171 Sum_probs=25.7
Q ss_pred HHHHHHHHHhCCCCceeEEEEE-cccC--CchHHHHHHHHHHcCCcEEE-Ecc
Q 028129 139 LSSIRWHLSEGGFQEFRLLERL-GEGS--SKPTAIIGDVADELNLDLVI-ISM 187 (213)
Q Consensus 139 l~~~~~~l~~~g~~~~~v~~~v-~~G~--~~p~~~Il~~A~e~~aDLIV-mG~ 187 (213)
.+.+.+.+.+.|++ +...- ...+ .+-.+.+++.+++.++|.|| +|.
T Consensus 46 ~~~v~~~L~~~g~~---~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGG 95 (382)
T cd08187 46 YDRVIASLKEAGIE---VVELGGVEPNPRLETVREGIELCKEEKVDFILAVGG 95 (382)
T ss_pred HHHHHHHHHHcCCe---EEEECCccCCCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 44555566666766 33221 1121 01345666778888999877 443
No 228
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=33.67 E-value=2.8e+02 Score=28.12 Aligned_cols=118 Identities=15% Similarity=0.090 Sum_probs=70.5
Q ss_pred CcchhhhhhhhcccCCCCCcccchhhhhhcCCCcEEEEeeCCCCCCCHHHHHHHHHHHH-HHhhc----CCEEEEEEEeC
Q 028129 52 SLFPRFRRIGHKAKVKSPESEINSVAEAFTNFKHLLLPITDQNPYLSEGTRQAAATTAA-LAKKY----GADITVVVIDE 126 (213)
Q Consensus 52 ~~~~~~~r~~~~a~~~~~~~~~~~~~~~~~~~k~ILV~vD~~~~~~S~~s~~Al~~A~~-LA~~~----~a~L~ll~V~~ 126 (213)
.+.+.+|+|++.....+.++........ ..-+++||.--. ||..+..|+-.+++ |.+.. ...+++++|.+
T Consensus 7 ~l~~~v~~~~~~~~~~~t~~Q~~a~~~i-~~G~nvLiiAPT----GsGKTeAAfLpil~~l~~~~~~~~~~~i~~lYIsP 81 (814)
T COG1201 7 ILDPRVREWFKRKFTSLTPPQRYAIPEI-HSGENVLIIAPT----GSGKTEAAFLPVINELLSLGKGKLEDGIYALYISP 81 (814)
T ss_pred hcCHHHHHHHHHhcCCCCHHHHHHHHHH-hCCCceEEEcCC----CCChHHHHHHHHHHHHHhccCCCCCCceEEEEeCc
Confidence 3567889999887655545444333222 345676665443 78889999988888 44441 33488888876
Q ss_pred CCCCChhhHHHHHHHHHHHHHhCCCCceeEEEEEcccCCchHHHHHHHHHHcCCcEEEE
Q 028129 127 RQKESLPEHENRLSSIRWHLSEGGFQEFRLLERLGEGSSKPTAIIGDVADELNLDLVII 185 (213)
Q Consensus 127 ~~~~~~~~~~~~l~~~~~~l~~~g~~~~~v~~~v~~G~~~p~~~Il~~A~e~~aDLIVm 185 (213)
-... ..+...++.|.+.+.|++ + .+.+|+ .+..+ -+.-.++-.|++|.
T Consensus 82 LkAL----n~Di~~rL~~~~~~~G~~---v--~vRhGD-T~~~e-r~r~~~~PPdILiT 129 (814)
T COG1201 82 LKAL----NNDIRRRLEEPLRELGIE---V--AVRHGD-TPQSE-KQKMLKNPPHILIT 129 (814)
T ss_pred HHHH----HHHHHHHHHHHHHHcCCc---c--ceecCC-CChHH-hhhccCCCCcEEEe
Confidence 4211 123345556667777888 5 566787 44333 33333345566554
No 229
>cd06315 PBP1_ABC_sugar_binding_like_6 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=33.65 E-value=2.3e+02 Score=23.50 Aligned_cols=16 Identities=13% Similarity=0.084 Sum_probs=8.2
Q ss_pred HHHHHHcCCcEEEEcc
Q 028129 172 GDVADELNLDLVIISM 187 (213)
Q Consensus 172 l~~A~e~~aDLIVmG~ 187 (213)
++.+++.++-+|+++.
T Consensus 74 ~~~~~~~~iPvV~~d~ 89 (280)
T cd06315 74 LELAQKAGIPVVGWHA 89 (280)
T ss_pred HHHHHHCCCCEEEecC
Confidence 3444445555565554
No 230
>PRK00919 GMP synthase subunit B; Validated
Probab=33.47 E-value=3.4e+02 Score=23.98 Aligned_cols=90 Identities=14% Similarity=0.253 Sum_probs=50.7
Q ss_pred CcEEEEeeCCCCCCCHHHHHHHHHHHHHHhhcCCEEEEEEEeCCCCCChhhHHHHHHHHHHHHHhCCCCceeEEE-E--E
Q 028129 84 KHLLLPITDQNPYLSEGTRQAAATTAALAKKYGADITVVVIDERQKESLPEHENRLSSIRWHLSEGGFQEFRLLE-R--L 160 (213)
Q Consensus 84 k~ILV~vD~~~~~~S~~s~~Al~~A~~LA~~~~a~L~ll~V~~~~~~~~~~~~~~l~~~~~~l~~~g~~~~~v~~-~--v 160 (213)
+++++++. |.-.|.-++..+.+ ..|.++++++++...... ...+.+++.+.+. ++ +.+.. . .
T Consensus 22 ~kVlVa~S-----GGVDSsvla~la~~---~lG~~v~aV~vD~G~~~~-----~E~e~a~~~~~~~-i~-~~vvd~~e~f 86 (307)
T PRK00919 22 GKAIIALS-----GGVDSSVAAVLAHR---AIGDRLTPVFVDTGLMRK-----GETERIKETFSDM-LN-LRIVDAKDRF 86 (307)
T ss_pred CCEEEEec-----CCHHHHHHHHHHHH---HhCCeEEEEEEECCCCCH-----HHHHHHHHHHhcc-CC-cEEEECCHHH
Confidence 78999999 77777766655533 347789999998765421 1122333222221 22 00100 0 0
Q ss_pred ---cccCCc-----------hHHHHHHHHHHcCCcEEEEccc
Q 028129 161 ---GEGSSK-----------PTAIIGDVADELNLDLVIISME 188 (213)
Q Consensus 161 ---~~G~~~-----------p~~~Il~~A~e~~aDLIVmG~~ 188 (213)
..|-.+ -...+.++|++++++.|+.|+.
T Consensus 87 l~~L~~v~npe~rr~~c~r~~~~~~~~~A~~~g~~~Ia~Gtn 128 (307)
T PRK00919 87 LDALKGVTDPEEKRKIIGETFIRVFEEVAKEIGAEYLVQGTI 128 (307)
T ss_pred HHhccCCCChHHhhhHHHHHHHHHHHHHHHHcCCCEEEECCC
Confidence 001001 2345557899999999999985
No 231
>PRK09423 gldA glycerol dehydrogenase; Provisional
Probab=33.39 E-value=3.5e+02 Score=24.10 Aligned_cols=9 Identities=22% Similarity=0.504 Sum_probs=4.8
Q ss_pred CCcEEEEcc
Q 028129 179 NLDLVIISM 187 (213)
Q Consensus 179 ~aDLIVmG~ 187 (213)
+..+|.+-+
T Consensus 108 ~~p~i~IPT 116 (366)
T PRK09423 108 GVPVVIVPT 116 (366)
T ss_pred CCCEEEeCC
Confidence 455555554
No 232
>COG2262 HflX GTPases [General function prediction only]
Probab=33.38 E-value=3.6e+02 Score=25.06 Aligned_cols=50 Identities=24% Similarity=0.354 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHhCCCCcee----------EEEEEcccCCchHHHHHHHHHHcCCcEEEEccc
Q 028129 136 ENRLSSIRWHLSEGGFQEFR----------LLERLGEGSSKPTAIIGDVADELNLDLVIISME 188 (213)
Q Consensus 136 ~~~l~~~~~~l~~~g~~~~~----------v~~~v~~G~~~p~~~Il~~A~e~~aDLIVmG~~ 188 (213)
+..++++.......|.+-.+ ....+..| -.++|-+.+++.++|+||....
T Consensus 19 ~~~leEl~~La~tag~~v~~~~~q~r~~pdp~~~iG~G---K~eEi~~~v~~~~ad~VIf~~~ 78 (411)
T COG2262 19 EESLEELAELAETAGYEVVEVVTQKRERPDPKTYIGSG---KLEEIAEAVEETGADLVIFDHE 78 (411)
T ss_pred hhhHHHHHHHHHHcCCeEeeeEEEeccCCCcceecCcc---hHHHHHHHHHhcCCCEEEECCc
Confidence 34455655555555655211 12233334 6889999999999999999775
No 233
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=33.35 E-value=3.1e+02 Score=23.41 Aligned_cols=90 Identities=16% Similarity=0.164 Sum_probs=54.0
Q ss_pred cEEEEeeCCCCCCCHHHHHHHHHHHHHHhhcCCEEEEEEEeCCCCCChhhHHHHHHHHHHHHHhCCCCceeEEEEEcccC
Q 028129 85 HLLLPITDQNPYLSEGTRQAAATTAALAKKYGADITVVVIDERQKESLPEHENRLSSIRWHLSEGGFQEFRLLERLGEGS 164 (213)
Q Consensus 85 ~ILV~vD~~~~~~S~~s~~Al~~A~~LA~~~~a~L~ll~V~~~~~~~~~~~~~~l~~~~~~l~~~g~~~~~v~~~v~~G~ 164 (213)
+|+|=+|-+..-|.-+-.+.+..|..|. ..|.++.++.-.... ...+.+.+.|++ +...-..++
T Consensus 1 ~i~ir~Da~~~iG~GHv~Rcl~LA~~l~-~~g~~v~f~~~~~~~------------~~~~~i~~~g~~---v~~~~~~~~ 64 (279)
T TIGR03590 1 KILFRADASSEIGLGHVMRCLTLARALH-AQGAEVAFACKPLPG------------DLIDLLLSAGFP---VYELPDESS 64 (279)
T ss_pred CEEEEecCCccccccHHHHHHHHHHHHH-HCCCEEEEEeCCCCH------------HHHHHHHHcCCe---EEEecCCCc
Confidence 4677777434446667788888888774 346677666433211 112345666777 443211110
Q ss_pred -CchHHHHHHHHHHcCCcEEEEcccCC
Q 028129 165 -SKPTAIIGDVADELNLDLVIISMEAI 190 (213)
Q Consensus 165 -~~p~~~Il~~A~e~~aDLIVmG~~g~ 190 (213)
..-.+++.+..++.++|+||+-+..-
T Consensus 65 ~~~d~~~~~~~l~~~~~d~vV~D~y~~ 91 (279)
T TIGR03590 65 RYDDALELINLLEEEKFDILIVDHYGL 91 (279)
T ss_pred hhhhHHHHHHHHHhcCCCEEEEcCCCC
Confidence 01245688888888999999988743
No 234
>TIGR02154 PhoB phosphate regulon transcriptional regulatory protein PhoB. PhoB is a DNA-binding response regulator protein acting with PhoR in a 2-component system responding to phosphate ion. PhoB acts as a positive regulator of gene expression for phosphate-related genes such as phoA, phoS, phoE and ugpAB as well as itself. It is often found proximal to genes for the high-affinity phosphate ABC transporter (pstSCAB; GenProp0190) and presumably regulates these as well.
Probab=33.26 E-value=2.3e+02 Score=21.97 Aligned_cols=43 Identities=12% Similarity=0.125 Sum_probs=24.9
Q ss_pred HHHHHHHHHcCCcEEEEcccCCCCCCchHHHHHhc----CCCcEEEE
Q 028129 169 AIIGDVADELNLDLVIISMEAIHSKHVDANLLAEF----IPCPVLLL 211 (213)
Q Consensus 169 ~~Il~~A~e~~aDLIVmG~~g~~~~Gs~~~~vl~~----a~cPVLvV 211 (213)
+..++...+..+|+|++...-....|.....-++. ..+|++++
T Consensus 36 ~~~~~~~~~~~~d~vi~d~~~~~~~g~~~~~~l~~~~~~~~~~ii~l 82 (226)
T TIGR02154 36 DEALTLINERGPDLILLDWMLPGTSGIELCRRLRRRPETRAIPIIML 82 (226)
T ss_pred HHHHHHHHhcCCCEEEEECCCCCCcHHHHHHHHHccccCCCCCEEEE
Confidence 34445556678999999765432234443333433 35777765
No 235
>PRK10701 DNA-binding transcriptional regulator RstA; Provisional
Probab=33.23 E-value=2.5e+02 Score=22.40 Aligned_cols=17 Identities=18% Similarity=0.175 Sum_probs=9.5
Q ss_pred HHHHHHcCCcEEEEccc
Q 028129 172 GDVADELNLDLVIISME 188 (213)
Q Consensus 172 l~~A~e~~aDLIVmG~~ 188 (213)
++.+.+.++|+||+...
T Consensus 38 l~~~~~~~~dlvild~~ 54 (240)
T PRK10701 38 EATILREQPDLVLLDIM 54 (240)
T ss_pred HHHHhhCCCCEEEEeCC
Confidence 34445556666666554
No 236
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=33.11 E-value=3.2e+02 Score=23.61 Aligned_cols=44 Identities=14% Similarity=0.286 Sum_probs=29.3
Q ss_pred HHHHHHHHHHcCCcEEEEcccCCCCC---CchHHH--HHhcC-CCcEEEE
Q 028129 168 TAIIGDVADELNLDLVIISMEAIHSK---HVDANL--LAEFI-PCPVLLL 211 (213)
Q Consensus 168 ~~~Il~~A~e~~aDLIVmG~~g~~~~---Gs~~~~--vl~~a-~cPVLvV 211 (213)
+-++.+.|++.++|-+++........ +....+ ++..+ +.||++.
T Consensus 84 ai~~a~~A~~~Gad~v~v~pP~y~~~~~~~l~~~f~~ia~a~~~lpv~iY 133 (294)
T TIGR02313 84 TLELTKFAEEAGADAAMVIVPYYNKPNQEALYDHFAEVADAVPDFPIIIY 133 (294)
T ss_pred HHHHHHHHHHcCCCEEEEcCccCCCCCHHHHHHHHHHHHHhccCCCEEEE
Confidence 34466889999999999988643111 222222 37777 7999875
No 237
>PHA02546 47 endonuclease subunit; Provisional
Probab=33.04 E-value=1e+02 Score=27.31 Aligned_cols=21 Identities=5% Similarity=-0.233 Sum_probs=13.0
Q ss_pred hHHHHHHHHHHcCCcEEEEcc
Q 028129 167 PTAIIGDVADELNLDLVIISM 187 (213)
Q Consensus 167 p~~~Il~~A~e~~aDLIVmG~ 187 (213)
..+.|+++|+++++|+||++.
T Consensus 27 ~l~~ii~~a~~~~vD~VliaG 47 (340)
T PHA02546 27 FIKQAIEYSKAHGITTWIQLG 47 (340)
T ss_pred HHHHHHHHHHHcCCCEEEECC
Confidence 345566666666666666655
No 238
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=33.04 E-value=1.9e+02 Score=25.33 Aligned_cols=54 Identities=15% Similarity=0.116 Sum_probs=36.1
Q ss_pred EEEEEcccCCchHHHHHHHHHHcCCcEEEEcccCCCC-CCchH-----HHHHhcCCCcEEE
Q 028129 156 LLERLGEGSSKPTAIIGDVADELNLDLVIISMEAIHS-KHVDA-----NLLAEFIPCPVLL 210 (213)
Q Consensus 156 v~~~v~~G~~~p~~~Il~~A~e~~aDLIVmG~~g~~~-~Gs~~-----~~vl~~a~cPVLv 210 (213)
+-..-..+. .-..++++.|++.+..+|+..+.+... .|... ..+++++.+||.+
T Consensus 20 V~AfN~~n~-e~~~avi~AAee~~sPvIiq~~~~~~~~~g~~~~~~~~~~~A~~~~VPV~l 79 (284)
T PRK09195 20 VPAFNIHNL-ETMQVVVETAAELHSPVIIAGTPGTFSYAGTEYLLAIVSAAAKQYHHPLAL 79 (284)
T ss_pred EEEEEeCCH-HHHHHHHHHHHHhCCCEEEEcChhHHhhCCHHHHHHHHHHHHHHCCCCEEE
Confidence 444333333 578999999999999999998765311 23321 1238889999865
No 239
>cd08190 HOT Hydroxyacid-oxoacid transhydrogenase (HOT) involved in gamma-hydroxybutyrate metabolism. Hydroxyacid-oxoacid transhydrogenase (HOT), also known as D-2-hydroxyglutarate transhydrogenase. It catalyzes the conversion of gamma-hydroxybutyrate (GHB) to succinic semialdehyde (SSA), coupled to the stoichiometric conversion of alpha-ketoglutarate to D-2-hydroxyglutarate in gamma-Hydroxybutyrate catabolism. Unlike many other alcohols, which are oxidized by NAD-linked dehydrogenases, gamma-hydroxybutyrate is metabolized to succinate semialdehyde by hydroxyacid-oxoacid transhydrogenase which does not require free NAD or NADP, but instead using alpha -ketoglutarate as an acceptor, converting it to d-2-hydroxyglutarate. Alpha-ketoglutarate serves as an intermediate acceptor to regenerate NAD(P) required for the oxidation of GHB. HOT also catalyzes the reversible oxidation of a hydroxyacid obligatorily coupled to the reduction of an oxoacid, and requires no cofactor. In mammals, the HOT
Probab=32.73 E-value=2.6e+02 Score=25.50 Aligned_cols=44 Identities=9% Similarity=-0.047 Sum_probs=22.3
Q ss_pred HHHHHHHHHhCCCCceeEEEEE-cccC--CchHHHHHHHHHHcCCcEEEE
Q 028129 139 LSSIRWHLSEGGFQEFRLLERL-GEGS--SKPTAIIGDVADELNLDLVII 185 (213)
Q Consensus 139 l~~~~~~l~~~g~~~~~v~~~v-~~G~--~~p~~~Il~~A~e~~aDLIVm 185 (213)
++++...+.+.|++ +...- ...+ .+..+.+++.+++.++|.||-
T Consensus 40 ~~~v~~~L~~~gi~---~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIa 86 (414)
T cd08190 40 VKVVLDSLEAAGIN---FEVYDDVRVEPTDESFKDAIAFAKKGQFDAFVA 86 (414)
T ss_pred HHHHHHHHHHcCCc---EEEeCCCCCCcCHHHHHHHHHHHHhcCCCEEEE
Confidence 34445555556665 33211 1122 023345666777778888653
No 240
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=32.68 E-value=3.2e+02 Score=23.39 Aligned_cols=42 Identities=19% Similarity=0.332 Sum_probs=28.0
Q ss_pred HHHHHHHHHcCCcEEEEcccCCCCCCchHHH------HHhcCCCcEEEE
Q 028129 169 AIIGDVADELNLDLVIISMEAIHSKHVDANL------LAEFIPCPVLLL 211 (213)
Q Consensus 169 ~~Il~~A~e~~aDLIVmG~~g~~~~Gs~~~~------vl~~a~cPVLvV 211 (213)
-++.+.|++.++|-|++...... ..+.... ++..++.||++.
T Consensus 83 i~~a~~a~~~Gad~v~v~pP~y~-~~~~~~i~~~~~~i~~~~~~pi~lY 130 (285)
T TIGR00674 83 ISLTKFAEDVGADGFLVVTPYYN-KPTQEGLYQHFKAIAEEVDLPIILY 130 (285)
T ss_pred HHHHHHHHHcCCCEEEEcCCcCC-CCCHHHHHHHHHHHHhcCCCCEEEE
Confidence 34567889999999999875431 2222222 377788999875
No 241
>TIGR01387 cztR_silR_copR heavy metal response regulator. Members of this family contain a response regulator receiver domain (Pfam:PF00072) and an associated transcriptional regulatory region (Pfam:PF00486). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc. Most members encoded by genes adjacent to genes for encoding a member of the heavy metal sensor histidine kinase family (TIGRFAMs:TIGR01386), its partner in the two-component response regulator system.
Probab=32.24 E-value=2.4e+02 Score=21.80 Aligned_cols=43 Identities=19% Similarity=0.016 Sum_probs=24.8
Q ss_pred HHHHHHHHHcCCcEEEEcccCCCCCCchHHHHHh--cCCCcEEEE
Q 028129 169 AIIGDVADELNLDLVIISMEAIHSKHVDANLLAE--FIPCPVLLL 211 (213)
Q Consensus 169 ~~Il~~A~e~~aDLIVmG~~g~~~~Gs~~~~vl~--~a~cPVLvV 211 (213)
...++.+.+.++|+|++...-....|......++ ...+|++++
T Consensus 32 ~~~~~~~~~~~~dlvl~d~~~~~~~g~~~~~~l~~~~~~~~iivl 76 (218)
T TIGR01387 32 RDGLHLALKDDYDLIILDVMLPGMDGWQILQTLRRSGKQTPVLFL 76 (218)
T ss_pred HHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHccCCCCcEEEE
Confidence 3444556777899999976533223443333333 346787765
No 242
>PF13662 Toprim_4: Toprim domain; PDB: 1EQN_E 1DD9_A 3B39_B 1DDE_A.
Probab=32.20 E-value=95 Score=21.15 Aligned_cols=33 Identities=18% Similarity=0.240 Sum_probs=17.0
Q ss_pred CCcEEEEeeCCCCCCCHHHHHHHHHHHHHHhhcCCEEE
Q 028129 83 FKHLLLPITDQNPYLSEGTRQAAATTAALAKKYGADIT 120 (213)
Q Consensus 83 ~k~ILV~vD~~~~~~S~~s~~Al~~A~~LA~~~~a~L~ 120 (213)
+++|++++| .....+.+..+..+.....+.++.
T Consensus 46 ~~~Vii~~D-----~D~~G~~~a~~i~~~l~~~gi~v~ 78 (81)
T PF13662_consen 46 VKEVIIAFD-----NDKAGEKAAQKIAKKLLPLGIRVT 78 (81)
T ss_dssp -SEEEEEEE-----SSHHHHHHHHHHHHHHG-------
T ss_pred CceEEEEeC-----cCHHHHHHHHHHHHHHHhhccccc
Confidence 578888888 466666666666664444444443
No 243
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=31.92 E-value=2.6e+02 Score=22.11 Aligned_cols=23 Identities=17% Similarity=0.226 Sum_probs=16.6
Q ss_pred hHHHHHHHHHHcCCcEEEEcccC
Q 028129 167 PTAIIGDVADELNLDLVIISMEA 189 (213)
Q Consensus 167 p~~~Il~~A~e~~aDLIVmG~~g 189 (213)
-.++|++.+++.++|+|++|.-.
T Consensus 89 ~~~~i~~~I~~~~pdiv~vglG~ 111 (172)
T PF03808_consen 89 EEEAIINRINASGPDIVFVGLGA 111 (172)
T ss_pred hHHHHHHHHHHcCCCEEEEECCC
Confidence 46777777777778887777643
No 244
>TIGR00559 pdxJ pyridoxine 5'-phosphate synthase. PdxJ is required in the biosynthesis of pyridoxine (vitamin B6), a precursor to the enzyme cofactor pyridoxal phosphate. ECOCYC describes the predicted reaction equation as 1-amino-propan-2-one-3-phosphate + deoxyxylulose-5-phosphate = pyridoxine-5'-phosphate. The product of that reaction is oxidized by PdxH to pyridoxal 5'-phosphate.
Probab=31.92 E-value=2e+02 Score=24.60 Aligned_cols=45 Identities=13% Similarity=0.136 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHhCCCCceeEEEEEcccCCchHHHHHHHHHHcCCcEEEEcc
Q 028129 135 HENRLSSIRWHLSEGGFQEFRLLERLGEGSSKPTAIIGDVADELNLDLVIISM 187 (213)
Q Consensus 135 ~~~~l~~~~~~l~~~g~~~~~v~~~v~~G~~~p~~~Il~~A~e~~aDLIVmG~ 187 (213)
..+.+..+.+.+++.|+. +...+ ||..+=++.|.+.++|.|=+=+
T Consensus 108 ~~~~l~~~i~~l~~~gI~---VSLFi-----DP~~~qi~~A~~~GAd~VELhT 152 (237)
T TIGR00559 108 LKDKLCELVKRFHAAGIE---VSLFI-----DADKDQISAAAEVGADRIEIHT 152 (237)
T ss_pred CHHHHHHHHHHHHHCCCE---EEEEe-----CCCHHHHHHHHHhCcCEEEEec
Confidence 345677777889999998 77676 6888889999999999987733
No 245
>TIGR02634 xylF D-xylose ABC transporter, substrate-binding protein. Members of this family are periplasmic (when in Gram-negative bacteria) binding proteins for D-xylose import by a high-affinity ATP-binding cassette (ABC) transporter.
Probab=31.78 E-value=3.1e+02 Score=23.26 Aligned_cols=77 Identities=16% Similarity=0.082 Sum_probs=41.5
Q ss_pred CHHHHHHHHHHHHHHhhcCCEEEEEEEeCCCCCChhhHHHHHHHHHHHHHhCCCCceeEEEEEcccCCc--hHHHHHHHH
Q 028129 98 SEGTRQAAATTAALAKKYGADITVVVIDERQKESLPEHENRLSSIRWHLSEGGFQEFRLLERLGEGSSK--PTAIIGDVA 175 (213)
Q Consensus 98 S~~s~~Al~~A~~LA~~~~a~L~ll~V~~~~~~~~~~~~~~l~~~~~~l~~~g~~~~~v~~~v~~G~~~--p~~~Il~~A 175 (213)
++.-....+...+.|+..|..+.+..... . .+.. .+..+.+...+++ ..... +. + ....+++.+
T Consensus 10 ~~~~~~~~~~i~~~a~~~g~~v~~~~~~~----~---~~~q-~~~i~~l~~~~vD---gIIi~--~~-~~~~~~~~l~~~ 75 (302)
T TIGR02634 10 LERWQKDRDIFVAAAESLGAKVFVQSANG----N---EAKQ-ISQIENLIARGVD---VLVII--PQ-NGQVLSNAVQEA 75 (302)
T ss_pred hhhHHHHHHHHHHHHHhcCCEEEEEeCCC----C---HHHH-HHHHHHHHHcCCC---EEEEe--CC-ChhHHHHHHHHH
Confidence 44455556666667777777665432211 1 1111 1233345555666 33222 22 2 235677778
Q ss_pred HHcCCcEEEEccc
Q 028129 176 DELNLDLVIISME 188 (213)
Q Consensus 176 ~e~~aDLIVmG~~ 188 (213)
++.++-+|+++..
T Consensus 76 ~~~~iPvV~~d~~ 88 (302)
T TIGR02634 76 KDEGIKVVAYDRL 88 (302)
T ss_pred HHCCCeEEEecCc
Confidence 8888899998874
No 246
>PF00781 DAGK_cat: Diacylglycerol kinase catalytic domain; InterPro: IPR001206 The DAG-kinase catalytic domain or DAGKc domain is present in mammalian lipid kinases, such as diacylglycerol (DAG), ceramide and sphingosine kinases, as well as in related bacterial proteins [, ]. Eukaryotic DAG-kinase (2.7.1.107 from EC) catalyses the phosphorylation of DAG to phosphatidic acid, thus modulating the balance between the two signaling lipids. At least ten different isoforms have been identified in mammals, which form 5 groups characterised by different functional domains, such as the calcium-binding EF hand (see PDOC00018 from PROSITEDOC), PH (see PDOC50003 from PROSITEDOC), SAM (see PDOC50105 from PROSITEDOC) , DAG/PE-binding C1 domain (see PDOC00379 from PROSITEDOC) and ankyrin repeats (see PDOC50088 from PROSITEDOC) []. In bacteria, an integral membrane DAG kinase forms a homotrimeric protein that lacks the DAGKc domain (see PDOC00820 from PROSITEDOC). In contrast, the bacterial yegS protein is a soluble cytosolic protein that contains the DAGKc domain in the N-terminal part. YegS is a lipid kinase with two structural domains, wherein the active site is located in the interdomain cleft, C-terminal to the DAGKc domain which forms an alpha/beta fold []. The tertiary structure resembles that of NAD kinases and contains a metal-binding site in the C-terminal region [, ]. This domain is usually associated with an accessory domain (see IPR000756 from INTERPRO).; GO: 0004143 diacylglycerol kinase activity, 0007205 activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway; PDB: 2JGR_A 2BON_A 3T5P_D 3S40_A 2P1R_A 2QV7_A 2QVL_A.
Probab=31.77 E-value=2.1e+02 Score=21.11 Aligned_cols=65 Identities=9% Similarity=0.091 Sum_probs=32.7
Q ss_pred HHHHHHHHhCCCCceeEEEEEcccCCchHHHHHHHHHHcCC-cEEEEcccCCCCCCchHHHH--HhcCCC----cEEEEc
Q 028129 140 SSIRWHLSEGGFQEFRLLERLGEGSSKPTAIIGDVADELNL-DLVIISMEAIHSKHVDANLL--AEFIPC----PVLLLP 212 (213)
Q Consensus 140 ~~~~~~l~~~g~~~~~v~~~v~~G~~~p~~~Il~~A~e~~a-DLIVmG~~g~~~~Gs~~~~v--l~~a~c----PVLvVp 212 (213)
+++...+...+.. +.....+.. +..+.|....+..+. |.||+..- .|.....+ +.+... |+.++|
T Consensus 18 ~~v~~~l~~~~~~---~~~~~t~~~-~~~~~~~~~~~~~~~~~~ivv~GG----DGTl~~vv~~l~~~~~~~~~~l~iiP 89 (130)
T PF00781_consen 18 KKVEPALRAAGID---YEVIETESA-GHAEALARILALDDYPDVIVVVGG----DGTLNEVVNGLMGSDREDKPPLGIIP 89 (130)
T ss_dssp HHHHHHHHHTTCE---EEEEEESST-THHHHHHHHHHHTTS-SEEEEEES----HHHHHHHHHHHCTSTSSS--EEEEEE
T ss_pred HHHHHHHHHcCCc---eEEEEEecc-chHHHHHHHHhhccCccEEEEEcC----ccHHHHHHHHHhhcCCCccceEEEec
Confidence 4555556665544 333332233 466777665555454 66665432 23444433 334443 777776
No 247
>COG0683 LivK ABC-type branched-chain amino acid transport systems, periplasmic component [Amino acid transport and metabolism]
Probab=31.74 E-value=3.6e+02 Score=23.77 Aligned_cols=80 Identities=20% Similarity=0.122 Sum_probs=45.6
Q ss_pred HHHHHHHHHHhhcCC-EEEEEEEeCCCCCChhhHHHHHHHHHHHHHhCCCCceeEEEEEcccCCchHHHHHHHHHHcCCc
Q 028129 103 QAAATTAALAKKYGA-DITVVVIDERQKESLPEHENRLSSIRWHLSEGGFQEFRLLERLGEGSSKPTAIIGDVADELNLD 181 (213)
Q Consensus 103 ~Al~~A~~LA~~~~a-~L~ll~V~~~~~~~~~~~~~~l~~~~~~l~~~g~~~~~v~~~v~~G~~~p~~~Il~~A~e~~aD 181 (213)
.+...+-.+.+..+. ++.+++.+... .+...+.++..++..|.+ .-..+....++ .-...++..++..++|
T Consensus 134 q~~~~~~~l~~~~~~k~v~ii~~~~~y------g~~~~~~~~~~l~~~G~~-~~~~~~~~~~~-~~~~~~v~~i~~~~~d 205 (366)
T COG0683 134 QAAAAADYLVKKGGKKRVAIIGDDYAY------GEGLADAFKAALKALGGE-VVVEEVYAPGD-TDFSALVAKIKAAGPD 205 (366)
T ss_pred HHHHHHHHHHHhcCCcEEEEEeCCCCc------chhHHHHHHHHHHhCCCe-EEEEEeeCCCC-CChHHHHHHHHhcCCC
Confidence 455555555666666 55555544432 234445556667777775 11223333343 2367777777888888
Q ss_pred EEEEcccCC
Q 028129 182 LVIISMEAI 190 (213)
Q Consensus 182 LIVmG~~g~ 190 (213)
.|+++..+.
T Consensus 206 ~v~~~~~~~ 214 (366)
T COG0683 206 AVLVGGYGP 214 (366)
T ss_pred EEEECCCCc
Confidence 888877654
No 248
>PF07476 MAAL_C: Methylaspartate ammonia-lyase C-terminus; InterPro: IPR022662 Methylaspartate ammonia-lyase 4.3.1.2 from EC catalyses the second step of fermentation of glutamate. It is a homodimer. This domain represents the C-terminal region of methylaspartate ammonia-lyase and contains a TIM barrel fold similar to the PF01188 from PFAM. This domain represents the catalytic domain and contains a metal binding site []. ; PDB: 1KKO_B 1KKR_A 3ZVI_A 1KD0_B 1KCZ_B 3ZVH_A.
Probab=31.72 E-value=3.3e+02 Score=23.32 Aligned_cols=86 Identities=16% Similarity=0.115 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHHHhhcCCEEEEEEEeCCCCCChhhHHHHHHHHHHHHHhCCCCceeEEEEE-cccCCchHHHHHHHHHH
Q 028129 99 EGTRQAAATTAALAKKYGADITVVVIDERQKESLPEHENRLSSIRWHLSEGGFQEFRLLERL-GEGSSKPTAIIGDVADE 177 (213)
Q Consensus 99 ~~s~~Al~~A~~LA~~~~a~L~ll~V~~~~~~~~~~~~~~l~~~~~~l~~~g~~~~~v~~~v-~~G~~~p~~~Il~~A~e 177 (213)
..-.+..+|...|++... .+.+..=.+-...+-+..-+.+..+++.+...|+. ++... .+. +..+.|.+|++.
T Consensus 86 ~d~~~~adYl~~l~~aA~-P~~L~iEgP~d~g~r~~QI~~l~~Lr~~L~~~g~~---v~iVADEWC--NT~eDI~~F~da 159 (248)
T PF07476_consen 86 NDPDRMADYLAELEEAAA-PFKLRIEGPMDAGSREAQIEALAELREELDRRGIN---VEIVADEWC--NTLEDIREFADA 159 (248)
T ss_dssp T-HHHHHHHHHHHHHHHT-TS-EEEE-SB--SSHHHHHHHHHHHHHHHHHCT-----EEEEE-TT----SHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHhcC-CCeeeeeCCcCCCChHHHHHHHHHHHHHHHhcCCC---CeEEeehhc--CCHHHHHHHHhc
Confidence 356677788888776532 23332211111222233445677788889999988 66433 344 488999999999
Q ss_pred cCCcEEEEcccCC
Q 028129 178 LNLDLVIISMEAI 190 (213)
Q Consensus 178 ~~aDLIVmG~~g~ 190 (213)
..+|+|-+-+...
T Consensus 160 ~A~dmVQIKtPDL 172 (248)
T PF07476_consen 160 KAADMVQIKTPDL 172 (248)
T ss_dssp T-SSEEEE-GGGG
T ss_pred CCcCEEEecCCCc
Confidence 9999999988755
No 249
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=31.65 E-value=2e+02 Score=20.66 Aligned_cols=21 Identities=24% Similarity=0.227 Sum_probs=13.0
Q ss_pred hHHHHHHHHHHcCCcEEEEcc
Q 028129 167 PTAIIGDVADELNLDLVIISM 187 (213)
Q Consensus 167 p~~~Il~~A~e~~aDLIVmG~ 187 (213)
..+.+.+.+++.++|+|.++.
T Consensus 39 ~~~~l~~~~~~~~pd~V~iS~ 59 (121)
T PF02310_consen 39 PPEELVEALRAERPDVVGISV 59 (121)
T ss_dssp -HHHHHHHHHHTTCSEEEEEE
T ss_pred CHHHHHHHHhcCCCcEEEEEc
Confidence 346666666666666666655
No 250
>TIGR00930 2a30 K-Cl cotransporter.
Probab=31.61 E-value=5.3e+02 Score=26.59 Aligned_cols=94 Identities=6% Similarity=0.061 Sum_probs=55.5
Q ss_pred cEEEEeeCCCCCCCHHHHHHHHHHHHHHhhcCCEEEEE-EEeCCCCCC-hhhHHHHHHHHHHHHHhCCCCceeEEEEEcc
Q 028129 85 HLLLPITDQNPYLSEGTRQAAATTAALAKKYGADITVV-VIDERQKES-LPEHENRLSSIRWHLSEGGFQEFRLLERLGE 162 (213)
Q Consensus 85 ~ILV~vD~~~~~~S~~s~~Al~~A~~LA~~~~a~L~ll-~V~~~~~~~-~~~~~~~l~~~~~~l~~~g~~~~~v~~~v~~ 162 (213)
+||+.+++ .......++++-++.+..| +.++ ++.+.+... ..+.+...++....+++.+++. -..+..
T Consensus 577 qiLvl~~~-----p~~~~~Ll~f~~~l~~~~g--l~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---f~~~~~ 646 (953)
T TIGR00930 577 QCLVLTGP-----PVCRPALLDFASQFTKGKG--LMICGSVIQGPRLECVKEAQAAEAKIQTWLEKNKVKA---FYAVVV 646 (953)
T ss_pred eEEEEeCC-----CcCcHHHHHHHHHhccCCc--EEEEEEEecCchhhhHHHHHHHHHHHHHHHHHhCCCe---EEEEec
Confidence 78888883 4566788999988885333 4444 776653221 2222222334444556666663 223334
Q ss_pred cCCchHHHHHHHHHHc-----CCcEEEEcccC
Q 028129 163 GSSKPTAIIGDVADEL-----NLDLVIISMEA 189 (213)
Q Consensus 163 G~~~p~~~Il~~A~e~-----~aDLIVmG~~g 189 (213)
++ +..+.+-...+.. +...|+||-..
T Consensus 647 ~~-~~~~g~~~l~q~~GlG~l~PNtv~lg~~~ 677 (953)
T TIGR00930 647 AD-DLREGVRHLIQASGLGRMKPNTLVMGYKK 677 (953)
T ss_pred CC-CHHHHHHHHHHhcCCCCCCCCEEEecCcc
Confidence 54 5777777766654 56788888754
No 251
>PRK05234 mgsA methylglyoxal synthase; Validated
Probab=31.57 E-value=2.5e+02 Score=21.80 Aligned_cols=76 Identities=18% Similarity=0.200 Sum_probs=47.1
Q ss_pred CCCcEEEEeeCCCCCCCHHHHHHHHHHHHHHhhc-CCEEEEEEEeCCCCCChhhHHHHHHHHHHHHHhC-CCCceeEEEE
Q 028129 82 NFKHLLLPITDQNPYLSEGTRQAAATTAALAKKY-GADITVVVIDERQKESLPEHENRLSSIRWHLSEG-GFQEFRLLER 159 (213)
Q Consensus 82 ~~k~ILV~vD~~~~~~S~~s~~Al~~A~~LA~~~-~a~L~ll~V~~~~~~~~~~~~~~l~~~~~~l~~~-g~~~~~v~~~ 159 (213)
...+|++-+++ ..-..+++++..+.... |-+| +. .+.. .+.+.+. |++ +...
T Consensus 3 ~~~~v~lsv~d------~dK~~l~~~a~~l~~ll~Gf~l--~A-T~gT--------------a~~L~~~~Gi~---v~~v 56 (142)
T PRK05234 3 ARKRIALIAHD------HKKDDLVAWVKAHKDLLEQHEL--YA-TGTT--------------GGLIQEATGLD---VTRL 56 (142)
T ss_pred cCcEEEEEEec------cchHHHHHHHHHHHHHhcCCEE--EE-eChH--------------HHHHHhccCCe---eEEE
Confidence 45678888883 33567788888877653 4343 21 2111 1234455 877 5543
Q ss_pred Ecc---cCCchHHHHHHHHHHcCCcEEEEcc
Q 028129 160 LGE---GSSKPTAIIGDVADELNLDLVIISM 187 (213)
Q Consensus 160 v~~---G~~~p~~~Il~~A~e~~aDLIVmG~ 187 (213)
+.+ |+ ..|.+..++.++|+||--.
T Consensus 57 i~~~~gg~----~~i~~~I~~g~i~lVInt~ 83 (142)
T PRK05234 57 LSGPLGGD----QQIGALIAEGKIDMLIFFR 83 (142)
T ss_pred EcCCCCCc----hhHHHHHHcCceeEEEEec
Confidence 322 32 5699999999999999855
No 252
>cd01994 Alpha_ANH_like_IV This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=31.41 E-value=2.9e+02 Score=22.48 Aligned_cols=92 Identities=12% Similarity=0.142 Sum_probs=48.8
Q ss_pred cEEEEeeCCCCCCCHHHHHHHHHHHHHHhhcCCEEEEEEEeCCCC-CChhhHHHHHHHHHHHHHhCCCCceeEEEEEccc
Q 028129 85 HLLLPITDQNPYLSEGTRQAAATTAALAKKYGADITVVVIDERQK-ESLPEHENRLSSIRWHLSEGGFQEFRLLERLGEG 163 (213)
Q Consensus 85 ~ILV~vD~~~~~~S~~s~~Al~~A~~LA~~~~a~L~ll~V~~~~~-~~~~~~~~~l~~~~~~l~~~g~~~~~v~~~v~~G 163 (213)
++++.+. |...|.-++..+.+ .|-++..+++..+.. ...-.....++.++...+..|++ .......+
T Consensus 1 kv~v~~S-----GGkDS~~al~~a~~----~G~~v~~l~~~~~~~~~~~~~h~~~~e~~~~~A~~lgip---l~~i~~~~ 68 (194)
T cd01994 1 KVVALIS-----GGKDSCYALYRALE----EGHEVVALLNLTPEEGSSMMYHTVNHELLELQAEAMGIP---LIRIEISG 68 (194)
T ss_pred CEEEEec-----CCHHHHHHHHHHHH----cCCEEEEEEEEecCCCCcccccccCHHHHHHHHHHcCCc---EEEEeCCC
Confidence 4677888 78888877776655 356777664443221 11000111234444555666877 32221111
Q ss_pred C-----CchHHHHHHHHHHcCCcEEEEcccC
Q 028129 164 S-----SKPTAIIGDVADELNLDLVIISMEA 189 (213)
Q Consensus 164 ~-----~~p~~~Il~~A~e~~aDLIVmG~~g 189 (213)
+ .+..+.|.+.+++ +++.||-|.-.
T Consensus 69 ~~e~~~~~l~~~l~~~~~~-g~~~vv~G~i~ 98 (194)
T cd01994 69 EEEDEVEDLKELLRKLKEE-GVDAVVFGAIL 98 (194)
T ss_pred CchHHHHHHHHHHHHHHHc-CCCEEEECccc
Confidence 1 0233444455555 79999999954
No 253
>PF01933 UPF0052: Uncharacterised protein family UPF0052; InterPro: IPR002882 This entry contains LPPG:Fo 2-phospho-L-lactate transferase (CofD) and related sequences of unknown function belong to unidentified protein family UPF0052. CofD catalyses the fourth step in the biosynthesis of coenzyme F420, which is the transfer of the 2-phospholactate moiety from lactyl (2) diphospho-(5')guanosine (LPPG) to 7,8-didemethyl-8-hydroxy-5-deazariboflavin (FO) with the formation of the L-lactyl phosphodiester of 7,8-didemethyl-8-hydroxy-5-deazariboflavin (F420-0) and GMP. F420 is a flavin derivative found in methanogens, Mycobacteria, and several other lineages. This enzyme is characterised so far in Methanocaldococcus jannaschii (Methanococcus jannaschii) [] but appears restricted to F420-containing species and is predicted to carry out the same function in these other species. ; PDB: 2HZB_A 2O2Z_C 3CGW_A 3C3E_D 3C3D_D 2PPV_A 2P0Y_A 2Q7X_B.
Probab=31.37 E-value=73 Score=28.06 Aligned_cols=43 Identities=23% Similarity=0.300 Sum_probs=27.1
Q ss_pred chHHHHHHHHHHcCCcEEEEcccCCCCCCchHHHH-------HhcCCCcEEEE
Q 028129 166 KPTAIIGDVADELNLDLVIISMEAIHSKHVDANLL-------AEFIPCPVLLL 211 (213)
Q Consensus 166 ~p~~~Il~~A~e~~aDLIVmG~~g~~~~Gs~~~~v-------l~~a~cPVLvV 211 (213)
.+..+.++..++ +|+||+|--....+ +-..++ +++++||++.|
T Consensus 172 ~~~p~~l~AI~~--AD~IiigPgs~~TS-I~P~L~v~gi~~Ai~~s~a~kV~V 221 (300)
T PF01933_consen 172 KANPEALEAIEE--ADLIIIGPGSLYTS-IIPNLLVPGIREAIRESKAPKVYV 221 (300)
T ss_dssp -B-HHHHHHHHH---SEEEE-SS-CCCC-CHHHHTSHHHHHHHHHSSSEEEEE
T ss_pred CCCHHHHHHHHh--CCEEEEcCCCchhh-hcccccchhHHHHHHhCCCCEEEE
Confidence 467888888887 99999998764222 333332 78888998876
No 254
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=31.32 E-value=1.4e+02 Score=27.91 Aligned_cols=46 Identities=17% Similarity=0.239 Sum_probs=31.3
Q ss_pred EEcccCCchHHHHHHHH---HHcC-CcEEEEcccCCCCCCchHHH-------H---HhcCCCcEE
Q 028129 159 RLGEGSSKPTAIIGDVA---DELN-LDLVIISMEAIHSKHVDANL-------L---AEFIPCPVL 209 (213)
Q Consensus 159 ~v~~G~~~p~~~Il~~A---~e~~-aDLIVmG~~g~~~~Gs~~~~-------v---l~~a~cPVL 209 (213)
..+.|+ ....+|++.. ++.+ +|+||+|.-|. |...+ | +..+..||+
T Consensus 170 t~VQG~-~A~~eIv~aI~~an~~~~~DvlIVaRGGG----SiEDLW~FNdE~vaRAi~~s~iPvI 229 (440)
T COG1570 170 TLVQGE-GAAEEIVEAIERANQRGDVDVLIVARGGG----SIEDLWAFNDEIVARAIAASRIPVI 229 (440)
T ss_pred ccccCC-CcHHHHHHHHHHhhccCCCCEEEEecCcc----hHHHHhccChHHHHHHHHhCCCCeE
Confidence 456888 7888887654 4444 99999987653 33222 2 778888886
No 255
>COG2876 AroA 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism]
Probab=31.07 E-value=2.2e+02 Score=25.01 Aligned_cols=103 Identities=17% Similarity=0.112 Sum_probs=57.1
Q ss_pred CHHHHHHHHHHHHHHhhcCCEEEEEEEeCCC--CCChh-hHHHHHHHHHHHHHhCCCCceeEEEEEcccCCchHHHHHHH
Q 028129 98 SEGTRQAAATTAALAKKYGADITVVVIDERQ--KESLP-EHENRLSSIRWHLSEGGFQEFRLLERLGEGSSKPTAIIGDV 174 (213)
Q Consensus 98 S~~s~~Al~~A~~LA~~~~a~L~ll~V~~~~--~~~~~-~~~~~l~~~~~~l~~~g~~~~~v~~~v~~G~~~p~~~Il~~ 174 (213)
|-.+.+-+..+..-.+..|+++.---.+.+. ++++. -.++.+..+.+...+.|.. +...+..-. - ++.
T Consensus 54 svEs~E~i~~~A~~vk~~Ga~~lRGgafKPRTSPYsFQGlge~gL~~l~~a~~~~Gl~---vvtEvm~~~--~----~e~ 124 (286)
T COG2876 54 SVESEEQVRETAESVKAAGAKALRGGAFKPRTSPYSFQGLGEEGLKLLKRAADETGLP---VVTEVMDVR--D----VEA 124 (286)
T ss_pred ccCCHHHHHHHHHHHHHcchhhccCCcCCCCCCcccccccCHHHHHHHHHHHHHcCCe---eEEEecCHH--H----HHH
Confidence 3344555555555556667765444444432 22221 2234455555556677888 777664321 2 233
Q ss_pred HHHcCCcEEEEcccCCCCCCchHHHHHhcCCCcEEEEc
Q 028129 175 ADELNLDLVIISMEAIHSKHVDANLLAEFIPCPVLLLP 212 (213)
Q Consensus 175 A~e~~aDLIVmG~~g~~~~Gs~~~~vl~~a~cPVLvVp 212 (213)
+.++ +|+|=+|+|.. ....-..-+.+.+.|||+=|
T Consensus 125 ~~~y-~DilqvGARNM--QNF~LLke~G~~~kPvLLKR 159 (286)
T COG2876 125 AAEY-ADILQVGARNM--QNFALLKEVGRQNKPVLLKR 159 (286)
T ss_pred HHhh-hhHHHhcccch--hhhHHHHHhcccCCCeEEec
Confidence 3333 89999999875 32333333777888888743
No 256
>PRK06988 putative formyltransferase; Provisional
Probab=30.23 E-value=2.6e+02 Score=24.59 Aligned_cols=43 Identities=9% Similarity=0.047 Sum_probs=28.1
Q ss_pred HHHHHHHhCCCCceeEEEEEcccCCchHHHHHHHHHHcCCcEEEEcccCC
Q 028129 141 SIRWHLSEGGFQEFRLLERLGEGSSKPTAIIGDVADELNLDLVIISMEAI 190 (213)
Q Consensus 141 ~~~~~l~~~g~~~~~v~~~v~~G~~~p~~~Il~~A~e~~aDLIVmG~~g~ 190 (213)
.+++...+.|+. +.... + --.+++++..++.++|+||+...++
T Consensus 46 ~v~~~A~~~gip---~~~~~---~-~~~~~~~~~l~~~~~Dliv~~~~~~ 88 (312)
T PRK06988 46 SVAAVAAEHGIP---VITPA---D-PNDPELRAAVAAAAPDFIFSFYYRH 88 (312)
T ss_pred HHHHHHHHcCCc---EEccc---c-CCCHHHHHHHHhcCCCEEEEehhcc
Confidence 344556777888 43211 1 1124678888899999999988764
No 257
>TIGR00639 PurN phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent. In phylogenetic analyses, the member from Saccharomyces cerevisiae shows a long branch length but membership in the family, while the formyltetrahydrofolate deformylases form a closely related outgroup.
Probab=30.22 E-value=3e+02 Score=22.35 Aligned_cols=89 Identities=15% Similarity=0.072 Sum_probs=45.3
Q ss_pred cEEEEeeCCCCCCCHHHHHHHHHHHHHHhhcCCEEEEEEEeCCCCCChhhHHHHHHHHHHHHHhCCCCceeEEEEEcccC
Q 028129 85 HLLLPITDQNPYLSEGTRQAAATTAALAKKYGADITVVVIDERQKESLPEHENRLSSIRWHLSEGGFQEFRLLERLGEGS 164 (213)
Q Consensus 85 ~ILV~vD~~~~~~S~~s~~Al~~A~~LA~~~~a~L~ll~V~~~~~~~~~~~~~~l~~~~~~l~~~g~~~~~v~~~v~~G~ 164 (213)
+|.|-+. ++.....++-.+..- ...++++.++..+.+. . .......+.|++-+.+...-....
T Consensus 2 riail~s-----g~gs~~~~ll~~~~~-~~l~~~I~~vi~~~~~------~-----~~~~~A~~~gip~~~~~~~~~~~~ 64 (190)
T TIGR00639 2 RIVVLIS-----GNGSNLQAIIDACKE-GKIPASVVLVISNKPD------A-----YGLERAAQAGIPTFVLSLKDFPSR 64 (190)
T ss_pred eEEEEEc-----CCChhHHHHHHHHHc-CCCCceEEEEEECCcc------c-----hHHHHHHHcCCCEEEECccccCch
Confidence 4666566 444454444444321 2334555554444321 1 113345667888211111111110
Q ss_pred CchHHHHHHHHHHcCCcEEEEcccCC
Q 028129 165 SKPTAIIGDVADELNLDLVIISMEAI 190 (213)
Q Consensus 165 ~~p~~~Il~~A~e~~aDLIVmG~~g~ 190 (213)
....+++.+..++.++|+||+...++
T Consensus 65 ~~~~~~~~~~l~~~~~D~iv~~~~~~ 90 (190)
T TIGR00639 65 EAFDQAIIEELRAHEVDLVVLAGFMR 90 (190)
T ss_pred hhhhHHHHHHHHhcCCCEEEEeCcch
Confidence 01246888999999999999977654
No 258
>TIGR01284 alt_nitrog_alph nitrogenase alpha chain. This model represents the alpha chains of various forms of the nitrogen-fixing enzyme nitrogenase: vanadium-iron, iron-iron, and molybdenum-iron. Most examples of NifD, the molybdenum-iron type nitrogenase alpha chain, are excluded from this model and described instead by equivalog model TIGR01282. It appears by phylogenetic and UPGMA trees that this model represents a distinct clade of NifD homologs, in which arose several molybdenum-independent forms.
Probab=30.16 E-value=4.5e+02 Score=24.39 Aligned_cols=83 Identities=8% Similarity=0.053 Sum_probs=47.6
Q ss_pred CCCcEEEEeeCCCCCCCHHHHHHHHHHHHHHhhcCCEEEEEEEeCCCCCChhhHHHHHHHHHHHHHhCCCCceeEEEEEc
Q 028129 82 NFKHLLLPITDQNPYLSEGTRQAAATTAALAKKYGADITVVVIDERQKESLPEHENRLSSIRWHLSEGGFQEFRLLERLG 161 (213)
Q Consensus 82 ~~k~ILV~vD~~~~~~S~~s~~Al~~A~~LA~~~~a~L~ll~V~~~~~~~~~~~~~~l~~~~~~l~~~g~~~~~v~~~v~ 161 (213)
.-|++.|..+ . ..++.++..|....|.++..+...... ++.++.+.+.+ + . ....+
T Consensus 324 ~GkrvaI~~~-----~----~~~~~l~~~l~~ElGmevv~~~~~~~~-------~~~~~~~~~~~---~-~---~~~~i- 379 (457)
T TIGR01284 324 RGKKVWVWSG-----G----PKLWHWPRPLEDELGMEVVAVSTKFGH-------EDDYEKIIARV---R-E---GTVII- 379 (457)
T ss_pred CCCEEEEECC-----C----cHHHHHHHHHHHhCCCEEEEEEEEeCC-------HHHHHHHHHhc---C-C---CeEEE-
Confidence 4578888777 2 255666666777789888776443221 11122222111 1 1 11122
Q ss_pred ccCCchHHHHHHHHHHcCCcEEEEcccCC
Q 028129 162 EGSSKPTAIIGDVADELNLDLVIISMEAI 190 (213)
Q Consensus 162 ~G~~~p~~~Il~~A~e~~aDLIVmG~~g~ 190 (213)
++ .-..++.+.+++.++|||+=|.+++
T Consensus 380 -~d-~~~~e~~~~i~~~~pDllig~~~~~ 406 (457)
T TIGR01284 380 -DD-PNELELEEIIEKYKPDIILTGIREG 406 (457)
T ss_pred -eC-CCHHHHHHHHHhcCCCEEEecCCcc
Confidence 22 1345777888999999999887765
No 259
>cd06294 PBP1_ycjW_transcription_regulator_like Ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors. This group includes the ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=30.13 E-value=3e+02 Score=22.26 Aligned_cols=73 Identities=19% Similarity=0.210 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHhhcCCEEEEEEEeCCCCCChhhHHHHHHHHHHHHHhCCCCceeEEEEEcccCCchHHHHHHHHHHcCCc
Q 028129 102 RQAAATTAALAKKYGADITVVVIDERQKESLPEHENRLSSIRWHLSEGGFQEFRLLERLGEGSSKPTAIIGDVADELNLD 181 (213)
Q Consensus 102 ~~Al~~A~~LA~~~~a~L~ll~V~~~~~~~~~~~~~~l~~~~~~l~~~g~~~~~v~~~v~~G~~~p~~~Il~~A~e~~aD 181 (213)
...+......+++.|-++.+.. ... .+...+.+...+...+++ ..... +. .....+++.+.+.++-
T Consensus 20 ~~~~~~~~~~~~~~g~~~~~~~--~~~------~~~~~~~~~~~~~~~~~d---giii~--~~-~~~~~~~~~~~~~~ip 85 (270)
T cd06294 20 IEVLRGISAVANENGYDISLAT--GKN------EEELLEEVKKMIQQKRVD---GFILL--YS-REDDPIIDYLKEEKFP 85 (270)
T ss_pred HHHHHHHHHHHHHCCCEEEEec--CCC------cHHHHHHHHHHHHHcCcC---EEEEe--cC-cCCcHHHHHHHhcCCC
Confidence 4455555556677776665431 111 112223333334333444 22222 11 1334566777788888
Q ss_pred EEEEccc
Q 028129 182 LVIISME 188 (213)
Q Consensus 182 LIVmG~~ 188 (213)
+|.++..
T Consensus 86 vV~~~~~ 92 (270)
T cd06294 86 FVVIGKP 92 (270)
T ss_pred EEEECCC
Confidence 9999874
No 260
>cd06282 PBP1_GntR_like_2 Ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding
Probab=30.13 E-value=2.9e+02 Score=22.18 Aligned_cols=78 Identities=13% Similarity=0.051 Sum_probs=40.0
Q ss_pred CHHHHHHHHHHHHHHhhcCCEEEEEEEeCCCCCChhhHHHHHHHHHHHHHhCCCCceeEEEEEcccCCchHHHHHHHHHH
Q 028129 98 SEGTRQAAATTAALAKKYGADITVVVIDERQKESLPEHENRLSSIRWHLSEGGFQEFRLLERLGEGSSKPTAIIGDVADE 177 (213)
Q Consensus 98 S~~s~~Al~~A~~LA~~~~a~L~ll~V~~~~~~~~~~~~~~l~~~~~~l~~~g~~~~~v~~~v~~G~~~p~~~Il~~A~e 177 (213)
++.-...++...+.++..|..+.+..... +.+...+.+ ..+...++. .... ..++ ......++.+++
T Consensus 11 ~~~~~~~~~~i~~~~~~~g~~~~~~~~~~-------~~~~~~~~~-~~l~~~~vd---giii-~~~~-~~~~~~~~~~~~ 77 (266)
T cd06282 11 NPVFAECVQGIQEEARAAGYSLLLATTDY-------DAEREADAV-ETLLRQRVD---GLIL-TVAD-AATSPALDLLDA 77 (266)
T ss_pred cchHHHHHHHHHHHHHHCCCEEEEeeCCC-------CHHHHHHHH-HHHHhcCCC---EEEE-ecCC-CCchHHHHHHhh
Confidence 44455666667777787787776653211 111212222 223333444 2211 1122 122346777888
Q ss_pred cCCcEEEEccc
Q 028129 178 LNLDLVIISME 188 (213)
Q Consensus 178 ~~aDLIVmG~~ 188 (213)
.++-+|+++..
T Consensus 78 ~~ipvV~~~~~ 88 (266)
T cd06282 78 ERVPYVLAYND 88 (266)
T ss_pred CCCCEEEEecc
Confidence 88888888764
No 261
>cd01545 PBP1_SalR Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. The SalR binds to glucose based compound Salicin which is chemically related to aspirin. The ligand-binding of SalR is structurally homologous to the periplasmic sugar-binding domain of ABC-transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand bind
Probab=30.08 E-value=3e+02 Score=22.25 Aligned_cols=76 Identities=12% Similarity=0.062 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHhhcCCEEEEEEEeCCCCCChhhHHHHHHHHHHHHHhCCCCceeEEEEEcccCCchHHHHHHHHHHcCC
Q 028129 101 TRQAAATTAALAKKYGADITVVVIDERQKESLPEHENRLSSIRWHLSEGGFQEFRLLERLGEGSSKPTAIIGDVADELNL 180 (213)
Q Consensus 101 s~~Al~~A~~LA~~~~a~L~ll~V~~~~~~~~~~~~~~l~~~~~~l~~~g~~~~~v~~~v~~G~~~p~~~Il~~A~e~~a 180 (213)
-...+.-....++..|-.+.+...+... +.....+.+.+...++. -.... .+. .....+++.+.+.++
T Consensus 14 ~~~~~~gi~~~~~~~g~~~~~~~~~~~~-------~~~~~~~~~~l~~~~vd---giii~-~~~-~~~~~~~~~~~~~~i 81 (270)
T cd01545 14 VSEIQLGALDACRDTGYQLVIEPCDSGS-------PDLAERVRALLQRSRVD---GVILT-PPL-SDNPELLDLLDEAGV 81 (270)
T ss_pred HHHHHHHHHHHHHhCCCeEEEEeCCCCc-------hHHHHHHHHHHHHCCCC---EEEEe-CCC-CCccHHHHHHHhcCC
Confidence 3344444444556667666554433211 11223333444444555 22111 121 123456677777888
Q ss_pred cEEEEccc
Q 028129 181 DLVIISME 188 (213)
Q Consensus 181 DLIVmG~~ 188 (213)
-+|+++..
T Consensus 82 pvv~i~~~ 89 (270)
T cd01545 82 PYVRIAPG 89 (270)
T ss_pred CEEEEecC
Confidence 89988864
No 262
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=30.03 E-value=1.6e+02 Score=24.29 Aligned_cols=45 Identities=13% Similarity=0.201 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHhCCCCceeEEEEEcccCCchHHHHHHHHHHcCCcEEEEcc
Q 028129 137 NRLSSIRWHLSEGGFQEFRLLERLGEGSSKPTAIIGDVADELNLDLVIISM 187 (213)
Q Consensus 137 ~~l~~~~~~l~~~g~~~~~v~~~v~~G~~~p~~~Il~~A~e~~aDLIVmG~ 187 (213)
+.++++++...+.|.. +...+ .|. ....-+....+.++|.+|.|+
T Consensus 151 ~KI~~l~~~~~~~~~~---~~I~v-DGG--I~~~~~~~~~~aGad~~V~Gs 195 (201)
T PF00834_consen 151 EKIRELRKLIPENGLD---FEIEV-DGG--INEENIKQLVEAGADIFVAGS 195 (201)
T ss_dssp HHHHHHHHHHHHHTCG---SEEEE-ESS--ESTTTHHHHHHHT--EEEESH
T ss_pred HHHHHHHHHHHhcCCc---eEEEE-ECC--CCHHHHHHHHHcCCCEEEECH
Confidence 4444555555555644 54444 343 555566666677999999997
No 263
>PRK00207 sulfur transfer complex subunit TusD; Validated
Probab=29.81 E-value=1.8e+02 Score=22.04 Aligned_cols=40 Identities=18% Similarity=0.306 Sum_probs=27.8
Q ss_pred cEEEEeeCCCCCCCHHHHHHHHHHHHHHhhcCCE-EEEEEEeC
Q 028129 85 HLLLPITDQNPYLSEGTRQAAATTAALAKKYGAD-ITVVVIDE 126 (213)
Q Consensus 85 ~ILV~vD~~~~~~S~~s~~Al~~A~~LA~~~~a~-L~ll~V~~ 126 (213)
+|+|-+. ..||+++....++++|..++.. |-+ +.++...+
T Consensus 2 ~~~iv~~-~~Py~~~~~~~al~~A~aa~~~-gh~v~~vFf~~D 42 (128)
T PRK00207 2 RYAIAVT-GPAYGTQQASSAYQFAQALLAE-GHELVSVFFYQD 42 (128)
T ss_pred EEEEEEc-CCCCCCHHHHHHHHHHHHHHhC-CCCeeEEEEehH
Confidence 3555554 3588999999999999988764 444 46665443
No 264
>PRK08576 hypothetical protein; Provisional
Probab=29.72 E-value=4.7e+02 Score=24.42 Aligned_cols=88 Identities=16% Similarity=0.227 Sum_probs=49.8
Q ss_pred cEEEEeeCCCCCCCHHHHHHHHHHHHHHhhcCCEEEEEEEeCCCCCChhhHHHHHHHHHHHHHhCCCCceeEEEE-E---
Q 028129 85 HLLLPITDQNPYLSEGTRQAAATTAALAKKYGADITVVVIDERQKESLPEHENRLSSIRWHLSEGGFQEFRLLER-L--- 160 (213)
Q Consensus 85 ~ILV~vD~~~~~~S~~s~~Al~~A~~LA~~~~a~L~ll~V~~~~~~~~~~~~~~l~~~~~~l~~~g~~~~~v~~~-v--- 160 (213)
+|+|++. |..+|.-++..+.... + ++.+++++.... .++. .+.+.+..+.-|++ +... .
T Consensus 236 rVvVafS-----GGKDStvLL~La~k~~---~-~V~aV~iDTG~e--~pet---~e~~~~lae~LGI~---lii~~v~~~ 298 (438)
T PRK08576 236 TVIVPWS-----GGKDSTAALLLAKKAF---G-DVTAVYVDTGYE--MPLT---DEYVEKVAEKLGVD---LIRAGVDVP 298 (438)
T ss_pred CEEEEEc-----ChHHHHHHHHHHHHhC---C-CCEEEEeCCCCC--ChHH---HHHHHHHHHHcCCC---EEEcccCHH
Confidence 8999999 8888887776664432 2 366777765421 1222 22222333334554 2210 0
Q ss_pred ----cccC-------C--chHHHHHHHHHHcCCcEEEEcccC
Q 028129 161 ----GEGS-------S--KPTAIIGDVADELNLDLVIISMEA 189 (213)
Q Consensus 161 ----~~G~-------~--~p~~~Il~~A~e~~aDLIVmG~~g 189 (213)
..|. | .-...+.+++++++++.++.|.+.
T Consensus 299 ~~~~~~g~p~~~~rcCt~lK~~pL~raake~g~~~iatG~R~ 340 (438)
T PRK08576 299 MPIEKYGMPTHSNRWCTKLKVEALEEAIRELEDGLLVVGDRD 340 (438)
T ss_pred HHhhhcCCCCcccchhhHHHHHHHHHHHHhCCCCEEEEEeeH
Confidence 0110 0 123467788899999999999863
No 265
>PRK10643 DNA-binding transcriptional regulator BasR; Provisional
Probab=29.69 E-value=2.7e+02 Score=21.58 Aligned_cols=17 Identities=12% Similarity=0.305 Sum_probs=9.4
Q ss_pred HHHHHHcCCcEEEEccc
Q 028129 172 GDVADELNLDLVIISME 188 (213)
Q Consensus 172 l~~A~e~~aDLIVmG~~ 188 (213)
++..+...+|+|++...
T Consensus 37 ~~~~~~~~~d~illd~~ 53 (222)
T PRK10643 37 EALLESGHYSLVVLDLG 53 (222)
T ss_pred HHHHHhCCCCEEEEECC
Confidence 33444556676666554
No 266
>cd00003 PNPsynthase Pyridoxine 5'-phosphate (PNP) synthase domain; pyridoxal 5'-phosphate is the active form of vitamin B6 that acts as an essential, ubiquitous coenzyme in amino acid metabolism. In bacteria, formation of pyridoxine 5'-phosphate is a step in the biosynthesis of vitamin B6. PNP synthase, a homooctameric enzyme, catalyzes the final step in PNP biosynthesis, the condensation of 1-amino-acetone 3-phosphate and 1-deoxy-D-xylulose 5-phosphate. PNP synthase adopts a TIM barrel topology, intersubunit contacts are mediated by three ''extra'' helices, generating a tetramer of symmetric dimers with shared active sites; the open state has been proposed to accept substrates and to release products, while most of the catalytic events are likely to occur in the closed state; a hydrophilic channel running through the center of the barrel was identified as the essential structural feature that enables PNP synthase to release water molecules produced during the reaction from the closed,
Probab=29.68 E-value=2.3e+02 Score=24.20 Aligned_cols=45 Identities=20% Similarity=0.260 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHhCCCCceeEEEEEcccCCchHHHHHHHHHHcCCcEEEEcc
Q 028129 135 HENRLSSIRWHLSEGGFQEFRLLERLGEGSSKPTAIIGDVADELNLDLVIISM 187 (213)
Q Consensus 135 ~~~~l~~~~~~l~~~g~~~~~v~~~v~~G~~~p~~~Il~~A~e~~aDLIVmG~ 187 (213)
..+.+..+.+.+++.|+. +...+ ||..+-++.|.+.++|.|=+=+
T Consensus 108 ~~~~l~~~i~~l~~~gI~---VSLFi-----DPd~~qi~~A~~~GAd~VELhT 152 (234)
T cd00003 108 QAEKLKPIIERLKDAGIR---VSLFI-----DPDPEQIEAAKEVGADRVELHT 152 (234)
T ss_pred CHHHHHHHHHHHHHCCCE---EEEEe-----CCCHHHHHHHHHhCcCEEEEec
Confidence 345677777889999998 77777 6888899999999999987733
No 267
>PF14582 Metallophos_3: Metallophosphoesterase, calcineurin superfamily; PDB: 1UF3_B 2YVT_A.
Probab=29.66 E-value=1.1e+02 Score=26.41 Aligned_cols=21 Identities=19% Similarity=0.143 Sum_probs=14.0
Q ss_pred chHHHHHHHHHHcCCcEEEEc
Q 028129 166 KPTAIIGDVADELNLDLVIIS 186 (213)
Q Consensus 166 ~p~~~Il~~A~e~~aDLIVmG 186 (213)
+..+.+++.+.+.++|+||+-
T Consensus 19 e~l~~l~~~~~e~~~D~~v~~ 39 (255)
T PF14582_consen 19 ELLERLVEVIPEKGPDAVVFV 39 (255)
T ss_dssp HHHHHHHHHHHHHT-SEEEEE
T ss_pred HHHHHHHhhccccCCCEEEEe
Confidence 455667777777788877763
No 268
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional
Probab=29.54 E-value=3.3e+02 Score=24.36 Aligned_cols=49 Identities=8% Similarity=-0.014 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHhCCCCceeEEEEEc-ccCCchHHHHHHHHHHcCCcEEEEcccC
Q 028129 135 HENRLSSIRWHLSEGGFQEFRLLERLG-EGSSKPTAIIGDVADELNLDLVIISMEA 189 (213)
Q Consensus 135 ~~~~l~~~~~~l~~~g~~~~~v~~~v~-~G~~~p~~~Il~~A~e~~aDLIVmG~~g 189 (213)
.+..++.+++....-++. +..... .| ......+.+.+.++|.|+++.+|
T Consensus 171 f~~~le~i~~i~~~~~vP---VivK~~g~g---~s~~~a~~l~~~Gvd~I~Vsg~G 220 (352)
T PRK05437 171 FRGWLDNIAEIVSALPVP---VIVKEVGFG---ISKETAKRLADAGVKAIDVAGAG 220 (352)
T ss_pred HHHHHHHHHHHHHhhCCC---EEEEeCCCC---CcHHHHHHHHHcCCCEEEECCCC
Confidence 333445555544444666 665443 33 33566777788899999997765
No 269
>cd08181 PPD-like 1,3-propanediol dehydrogenase-like (PPD). 1,3-propanediol dehydrogenase-like (PPD). This family is a member of the iron-containing alcohol dehydrogenase superfamily, and exhibits a dehydroquinate synthase-like fold. Protein sequence similarity search and other biochemical evidences suggest that they are close to the iron-containing 1,3-propanediol dehydrogenase (EC 1.1.1.202). 1,3-propanediol dehydrogenase catalyzes the oxidation of propane-1,3-diol to 3-hydroxypropanal with the simultaneous reduction of NADP+ to NADPH. The protein structure of Thermotoga maritima TM0920 gene contains one NADP+ and one iron ion.
Probab=29.52 E-value=3.3e+02 Score=24.23 Aligned_cols=17 Identities=29% Similarity=0.327 Sum_probs=11.7
Q ss_pred HHHHHHHHHcCCcEEEE
Q 028129 169 AIIGDVADELNLDLVII 185 (213)
Q Consensus 169 ~~Il~~A~e~~aDLIVm 185 (213)
+.+.+.+++.++|.||-
T Consensus 73 ~~~~~~~~~~~~D~IIa 89 (357)
T cd08181 73 MEAVEIAKKFNADFVIG 89 (357)
T ss_pred HHHHHHHHhcCCCEEEE
Confidence 45666677778887764
No 270
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=29.51 E-value=2.3e+02 Score=22.46 Aligned_cols=23 Identities=13% Similarity=0.199 Sum_probs=17.3
Q ss_pred hHHHHHHHHHHcCCcEEEEcccC
Q 028129 167 PTAIIGDVADELNLDLVIISMEA 189 (213)
Q Consensus 167 p~~~Il~~A~e~~aDLIVmG~~g 189 (213)
..++|++.+++.++|+|++|.-.
T Consensus 87 ~~~~i~~~I~~~~pdiv~vglG~ 109 (171)
T cd06533 87 EEEEIIERINASGADILFVGLGA 109 (171)
T ss_pred hHHHHHHHHHHcCCCEEEEECCC
Confidence 34557888888888888887754
No 271
>COG0761 lytB 4-Hydroxy-3-methylbut-2-enyl diphosphate reductase IspH [Lipid metabolism]
Probab=29.28 E-value=2.5e+02 Score=24.82 Aligned_cols=87 Identities=18% Similarity=0.216 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHHhhcCCEEEEEE-EeCCCC--------C--------Chhh-------HHHHHHHHHHHHHhCCCCcee
Q 028129 100 GTRQAAATTAALAKKYGADITVVV-IDERQK--------E--------SLPE-------HENRLSSIRWHLSEGGFQEFR 155 (213)
Q Consensus 100 ~s~~Al~~A~~LA~~~~a~L~ll~-V~~~~~--------~--------~~~~-------~~~~l~~~~~~l~~~g~~~~~ 155 (213)
.-++|++.+....+.+|+.+++.+ +..... . ..++ ....-....+.+++.|+.-++
T Consensus 15 GV~RAI~ive~al~~~g~pIyv~~eIVHN~~Vv~~L~~~g~~fve~l~e~p~~~~VIfsAHGVs~~v~~~a~~r~l~v~D 94 (294)
T COG0761 15 GVDRAIQIVERALEEYGAPIYVRHEIVHNRYVVDRLREKGAIFVEELDEVPDGATVIFSAHGVSPAVREEAKERGLKVID 94 (294)
T ss_pred hHHHHHHHHHHHHHHcCCCeEEEeccccCHHHHHHHHHcCCEeccccccCCCCCEEEEECCCCCHHHHHHHHHCCCEEEe
Confidence 456888888888888999988873 221110 0 0010 011122334556677777444
Q ss_pred EEEEEcccCCchHHHHHHHHHHcCCcEEEEcccCC
Q 028129 156 LLERLGEGSSKPTAIIGDVADELNLDLVIISMEAI 190 (213)
Q Consensus 156 v~~~v~~G~~~p~~~Il~~A~e~~aDLIVmG~~g~ 190 (213)
..+-++ - ++..++.++++ .+.+.|++|..|+
T Consensus 95 ATCPlV-t--Kvh~~v~~~~~-~G~~iIliG~~gH 125 (294)
T COG0761 95 ATCPLV-T--KVHKEVERYAR-EGYEIILIGHKGH 125 (294)
T ss_pred cCCCcc-h--HHHHHHHHHHh-CCCEEEEEccCCC
Confidence 333222 1 46677777765 4999999999886
No 272
>cd06267 PBP1_LacI_sugar_binding_like Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. In most cases, ligands are monosaccharide including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor. In this case, the domain sugar binding changes the DNA binding activity of the repressor domain.
Probab=29.21 E-value=2.9e+02 Score=21.88 Aligned_cols=17 Identities=12% Similarity=0.214 Sum_probs=13.8
Q ss_pred HHHHHHcCCcEEEEccc
Q 028129 172 GDVADELNLDLVIISME 188 (213)
Q Consensus 172 l~~A~e~~aDLIVmG~~ 188 (213)
++.+.+.++-+|.++..
T Consensus 71 ~~~~~~~~ipvv~~~~~ 87 (264)
T cd06267 71 LEELAALGIPVVLVDRP 87 (264)
T ss_pred HHHHHHcCCCEEEeccc
Confidence 77788888889888875
No 273
>cd07044 CofD_YvcK Family of CofD-like proteins and proteins related to YvcK. CofD is a 2-phospho-L-lactate transferase that catalyzes the last step in the biosynthesis of coenzyme F(420)-0 (F(420) without polyglutamate) by transferring the lactyl phosphate moiety of lactyl(2)diphospho-(5')guanosine (LPPG) to 7,8-didemethyl-8-hydroxy-5-deazariboflavin ribitol (F0). F420 is a hydride carrier, important for energy metabolism of methanogenic archaea, as well as for the biosynthesis of other natural products, like tetracycline in Streptomyces. F420 and some of its precursors are also utilized as cofactors for enzymes, like DNA photolyase in Mycobacterium tuberculosis. YvcK from Bacillus subtilis is a member of a family of mostly uncharacterized proteins and has been proposed to play a role in carbon metabolism, since its function is essential for growth on intermediates of the Krebs cycle and pentose phosphate pathway. Both families appear to have a conserved phosphate binding site, but ha
Probab=29.19 E-value=46 Score=29.52 Aligned_cols=44 Identities=9% Similarity=0.191 Sum_probs=29.7
Q ss_pred chHHHHHHHHHHcCCcEEEEcccCCCCCCchHHHH-------HhcCCCcEEEEc
Q 028129 166 KPTAIIGDVADELNLDLVIISMEAIHSKHVDANLL-------AEFIPCPVLLLP 212 (213)
Q Consensus 166 ~p~~~Il~~A~e~~aDLIVmG~~g~~~~Gs~~~~v-------l~~a~cPVLvVp 212 (213)
.+..+.++..++ +|+||+|--....+ .-..++ +++++||++.|.
T Consensus 163 ~~~~~~l~AI~~--ADlIvlgPGSlyTS-I~P~Llv~gi~eAi~~s~a~kV~V~ 213 (309)
T cd07044 163 SPSREVLEAIEK--ADNIVIGPGSLYTS-ILPNISVPGIREALKKTXAKKVYVS 213 (309)
T ss_pred CCCHHHHHHHHh--CCEEEECCCcCHHH-hhhhcCcHhHHHHHHhcCCCeEEEC
Confidence 477888888887 99999998653111 111111 778899988774
No 274
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=29.17 E-value=2e+02 Score=22.96 Aligned_cols=29 Identities=14% Similarity=0.190 Sum_probs=20.2
Q ss_pred EEEEEcccCCchHHHHHHHHHHcCCcEEEEcc
Q 028129 156 LLERLGEGSSKPTAIIGDVADELNLDLVIISM 187 (213)
Q Consensus 156 v~~~v~~G~~~p~~~Il~~A~e~~aDLIVmG~ 187 (213)
+...+-.|- -.+-|.+|++ .++|.|.+|+
T Consensus 128 v~ie~SGGI--~~~ni~~ya~-~gvD~isvg~ 156 (169)
T PF01729_consen 128 VKIEASGGI--TLENIAEYAK-TGVDVISVGS 156 (169)
T ss_dssp SEEEEESSS--STTTHHHHHH-TT-SEEEECH
T ss_pred EEEEEECCC--CHHHHHHHHh-cCCCEEEcCh
Confidence 444444555 5678899985 5899999997
No 275
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=29.14 E-value=4.2e+02 Score=23.74 Aligned_cols=101 Identities=19% Similarity=0.142 Sum_probs=58.6
Q ss_pred CHHHHHHHHHHHHHHhhcCCEEEEEEEeCCCC--CChh-hHHHHHHHHHHHHHhCCCCceeEEEEEcccCCchHHHHHHH
Q 028129 98 SEGTRQAAATTAALAKKYGADITVVVIDERQK--ESLP-EHENRLSSIRWHLSEGGFQEFRLLERLGEGSSKPTAIIGDV 174 (213)
Q Consensus 98 S~~s~~Al~~A~~LA~~~~a~L~ll~V~~~~~--~~~~-~~~~~l~~~~~~l~~~g~~~~~v~~~v~~G~~~p~~~Il~~ 174 (213)
-+..+.++++|..+.+ .++++--..++.+.. .++. -.++-++.+.+...+.|+. +...+.. ..=+++
T Consensus 103 iEs~e~~~~~A~~lk~-~ga~~~r~~~fKpRTsp~sf~G~g~~gL~~L~~~~~~~Gl~---v~tev~d------~~~~~~ 172 (335)
T PRK08673 103 VESEEQILEIARAVKE-AGAQILRGGAFKPRTSPYSFQGLGEEGLKLLAEAREETGLP---IVTEVMD------PRDVEL 172 (335)
T ss_pred cCCHHHHHHHHHHHHH-hchhhccCcEecCCCCCcccccccHHHHHHHHHHHHHcCCc---EEEeeCC------HHHHHH
Confidence 3456677888877754 456643334544321 1221 1234455555556778888 7666532 334455
Q ss_pred HHHcCCcEEEEcccCCCCCCchHHHHHhcCCCcEEEE
Q 028129 175 ADELNLDLVIISMEAIHSKHVDANLLAEFIPCPVLLL 211 (213)
Q Consensus 175 A~e~~aDLIVmG~~g~~~~Gs~~~~vl~~a~cPVLvV 211 (213)
+.++ +|++=+|++.- .-..-..-+.+..+||++=
T Consensus 173 l~~~-vd~lqIgAr~~--~N~~LL~~va~~~kPViLk 206 (335)
T PRK08673 173 VAEY-VDILQIGARNM--QNFDLLKEVGKTNKPVLLK 206 (335)
T ss_pred HHHh-CCeEEECcccc--cCHHHHHHHHcCCCcEEEe
Confidence 5566 89999999865 3233333377788888863
No 276
>PRK05265 pyridoxine 5'-phosphate synthase; Provisional
Probab=28.94 E-value=2.3e+02 Score=24.27 Aligned_cols=44 Identities=16% Similarity=0.212 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHhCCCCceeEEEEEcccCCchHHHHHHHHHHcCCcEEEEc
Q 028129 135 HENRLSSIRWHLSEGGFQEFRLLERLGEGSSKPTAIIGDVADELNLDLVIIS 186 (213)
Q Consensus 135 ~~~~l~~~~~~l~~~g~~~~~v~~~v~~G~~~p~~~Il~~A~e~~aDLIVmG 186 (213)
..+.+..+.+.+++.|+. +.-.+ ||..+=++.|.+.++|.|=+=
T Consensus 111 ~~~~l~~~i~~L~~~gIr---VSLFi-----dP~~~qi~~A~~~GAd~VELh 154 (239)
T PRK05265 111 QFDKLKPAIARLKDAGIR---VSLFI-----DPDPEQIEAAAEVGADRIELH 154 (239)
T ss_pred CHHHHHHHHHHHHHCCCE---EEEEe-----CCCHHHHHHHHHhCcCEEEEe
Confidence 345677777889999998 77677 588888999999999998773
No 277
>PRK15029 arginine decarboxylase; Provisional
Probab=28.93 E-value=6e+02 Score=25.57 Aligned_cols=64 Identities=16% Similarity=0.147 Sum_probs=34.0
Q ss_pred HHHHHHHHHhCCCCceeEEEEEcccCCchHHHHHHHHHH-cCCcEEEEcccCCCCCCch--HHHH--Hh--cCCCcEEEE
Q 028129 139 LSSIRWHLSEGGFQEFRLLERLGEGSSKPTAIIGDVADE-LNLDLVIISMEAIHSKHVD--ANLL--AE--FIPCPVLLL 211 (213)
Q Consensus 139 l~~~~~~l~~~g~~~~~v~~~v~~G~~~p~~~Il~~A~e-~~aDLIVmG~~g~~~~Gs~--~~~v--l~--~a~cPVLvV 211 (213)
.+.+...++..|++ +.. ...| +..++.+++ .++|+||+-..-....|.. ..++ ++ ...+||+++
T Consensus 21 ~~~L~~~Le~~G~e---V~~-a~s~-----~dAl~~l~~~~~~DlVLLD~~LPd~dG~~~~~ell~~IR~~~~~iPIIlL 91 (755)
T PRK15029 21 VERLADALSQQNVT---VIK-STSF-----DDGFAILSSNEAIDCLMFSYQMEHPDEHQNVRQLIGKLHERQQNVPVFLL 91 (755)
T ss_pred HHHHHHHHHHCCCE---EEE-ECCH-----HHHHHHHHhcCCCcEEEEECCCCCCccchhHHHHHHHHHhhCCCCCEEEE
Confidence 44555566777776 552 3222 334444454 5789999875432224541 1111 33 346888876
No 278
>PF03740 PdxJ: Pyridoxal phosphate biosynthesis protein PdxJ; InterPro: IPR004569 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. In Escherichia coli, the pdx genes involved in vitamin B6 have been characterised [, , ]. This entry represents PdxJ, which catalyses the condensation of 1-amino-3-oxo-4-(phosphohydroxy)propan-2-one and 1-deoxy-D-xylulose-5-phosphate to form pyridoxine-5'-phosphate. The product of the PdxJ reaction is then oxidized by PdxH to pyridoxal 5'-phosphate.; GO: 0008615 pyridoxine biosynthetic process, 0005737 cytoplasm; PDB: 3F4N_B 3O6D_A 3O6C_A 1M5W_G 1IXQ_D 1IXP_B 1IXN_A 1HO4_C 1HO1_A 1IXO_D ....
Probab=28.55 E-value=2.3e+02 Score=24.32 Aligned_cols=45 Identities=22% Similarity=0.303 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHhCCCCceeEEEEEcccCCchHHHHHHHHHHcCCcEEEEcc
Q 028129 135 HENRLSSIRWHLSEGGFQEFRLLERLGEGSSKPTAIIGDVADELNLDLVIISM 187 (213)
Q Consensus 135 ~~~~l~~~~~~l~~~g~~~~~v~~~v~~G~~~p~~~Il~~A~e~~aDLIVmG~ 187 (213)
..+.+..+...+++.|+. +...+ ||..+-++.|.+.++|.|=+=+
T Consensus 109 ~~~~l~~~i~~L~~~gIr---vSLFi-----DP~~~qi~~A~~~Gad~VELhT 153 (239)
T PF03740_consen 109 NRDRLKPVIKRLKDAGIR---VSLFI-----DPDPEQIEAAKELGADRVELHT 153 (239)
T ss_dssp GHHHHHHHHHHHHHTT-E---EEEEE------S-HHHHHHHHHTT-SEEEEET
T ss_pred CHHHHHHHHHHHHhCCCE---EEEEe-----CCCHHHHHHHHHcCCCEEEEeh
Confidence 346677778889999998 77777 6888999999999999887733
No 279
>TIGR00420 trmU tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase. tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (trmU, asuE, or mnmA) is involved in the biosynthesis of the modified nucleoside 5-methylaminomethyl-2-thiouridine (mnm5s2U34) present in the wobble position of some tRNAs. This enzyme appears not to occur in the Archaea.
Probab=28.51 E-value=4.3e+02 Score=23.65 Aligned_cols=21 Identities=24% Similarity=0.131 Sum_probs=18.0
Q ss_pred HHHHHHHHHc-CCcEEEEcccC
Q 028129 169 AIIGDVADEL-NLDLVIISMEA 189 (213)
Q Consensus 169 ~~Il~~A~e~-~aDLIVmG~~g 189 (213)
..+.++|++. ++|.|+.|++.
T Consensus 106 ~~l~~~a~~~~G~~~IATGHya 127 (352)
T TIGR00420 106 GAFLEYAAELLGNDKIATGHYA 127 (352)
T ss_pred HHHHHHHHHHcCCCEEEECCcc
Confidence 5667899986 99999999975
No 280
>PRK11466 hybrid sensory histidine kinase TorS; Provisional
Probab=28.37 E-value=3.7e+02 Score=26.73 Aligned_cols=63 Identities=6% Similarity=0.119 Sum_probs=35.9
Q ss_pred HHHHHHHhCCCCceeEEEEEcccCCchHHHHHHHHHHcCCcEEEEcccCCCCCCchHHHHHh--cCCCcEEEE
Q 028129 141 SIRWHLSEGGFQEFRLLERLGEGSSKPTAIIGDVADELNLDLVIISMEAIHSKHVDANLLAE--FIPCPVLLL 211 (213)
Q Consensus 141 ~~~~~l~~~g~~~~~v~~~v~~G~~~p~~~Il~~A~e~~aDLIVmG~~g~~~~Gs~~~~vl~--~a~cPVLvV 211 (213)
.+...+...|+. +.. .. +..+++-.+.+...+|+|+|...-....|......++ ...+|++++
T Consensus 696 ~l~~~L~~~g~~---v~~-a~----~~~~al~~~~~~~~~Dlvl~D~~mp~~~G~~~~~~lr~~~~~~~ii~~ 760 (914)
T PRK11466 696 ITAEMLNTSGAQ---VVA-VG----NAAQALETLQNSEPFAAALVDFDLPDYDGITLARQLAQQYPSLVLIGF 760 (914)
T ss_pred HHHHHHHhcCCc---eEE-eC----CHHHHHHHHHcCCCCCEEEEeCCCCCCCHHHHHHHHHhhCCCCCEEEE
Confidence 344455566666 542 32 2445555555555789999987543225665544443 356787765
No 281
>PF06415 iPGM_N: BPG-independent PGAM N-terminus (iPGM_N); InterPro: IPR011258 This family represents the N-terminal region of the 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (or phosphoglyceromutase or BPG-independent PGAM) protein (5.4.2.1 from EC). The family is found in conjunction with Metalloenzyme (located in the C-terminal region of the protein). ; GO: 0004619 phosphoglycerate mutase activity, 0030145 manganese ion binding, 0006007 glucose catabolic process, 0005737 cytoplasm; PDB: 1EQJ_A 1EJJ_A 1O99_A 1O98_A 3IGZ_B 3IGY_B 3NVL_A 2IFY_A.
Probab=28.34 E-value=2.3e+02 Score=23.95 Aligned_cols=81 Identities=12% Similarity=0.113 Sum_probs=46.5
Q ss_pred CCHHHHHHHHHHHHHHhhcCCEEEEEEEeCCCCCChhhHHHHHHHHHHHHHhCCCCceeEEEEEcccCCchH--------
Q 028129 97 LSEGTRQAAATTAALAKKYGADITVVVIDERQKESLPEHENRLSSIRWHLSEGGFQEFRLLERLGEGSSKPT-------- 168 (213)
Q Consensus 97 ~S~~s~~Al~~A~~LA~~~~a~L~ll~V~~~~~~~~~~~~~~l~~~~~~l~~~g~~~~~v~~~v~~G~~~p~-------- 168 (213)
++-....++..+++-++..+.+||++-........ ...+.+..+.+.+.+.|+++.- ...+..|. |..
T Consensus 8 g~~~~n~~l~~~~~~~k~~~~~lHl~GLlSdGGVH--Sh~~Hl~al~~~a~~~gv~~V~-vH~f~DGR-Dt~P~S~~~yl 83 (223)
T PF06415_consen 8 GSFFKNPVLLEAIEHAKKNGGRLHLMGLLSDGGVH--SHIDHLFALIKLAKKQGVKKVY-VHAFTDGR-DTPPKSALKYL 83 (223)
T ss_dssp TGGGTSHHHHHHHHHHCCTT--EEEEEEESS-SSS----HHHHHHHHHHHHHTT-SEEE-EEEEE-SS-SS-TTTHHHHH
T ss_pred CCcccCHHHHHHHHHHHhcCCeEEEEEEecCCCcc--ccHHHHHHHHHHHHHcCCCEEE-EEEecCCC-CCCcchHHHHH
Confidence 44455678899999999999999999555433221 1334556666777888987422 23455666 322
Q ss_pred HHHHHHHHHcCCc
Q 028129 169 AIIGDVADELNLD 181 (213)
Q Consensus 169 ~~Il~~A~e~~aD 181 (213)
+.|.+..++.+.-
T Consensus 84 ~~l~~~l~~~~~g 96 (223)
T PF06415_consen 84 EELEEKLAEIGIG 96 (223)
T ss_dssp HHHHHHHHHHTCT
T ss_pred HHHHHHHHhhCCc
Confidence 5566666665553
No 282
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=28.23 E-value=3.8e+02 Score=22.84 Aligned_cols=29 Identities=7% Similarity=-0.034 Sum_probs=18.0
Q ss_pred ccccccccccccCcchhhhhhhhcccCCCCCccc
Q 028129 40 STQSLFSKARKLSLFPRFRRIGHKAKVKSPESEI 73 (213)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~r~~~~a~~~~~~~~~ 73 (213)
-+|.|-.. +-...+++|++.+.|...-.+
T Consensus 73 ATHPfA~~-----is~na~~a~~~~~ipylR~eR 101 (249)
T PF02571_consen 73 ATHPFAAE-----ISQNAIEACRELGIPYLRFER 101 (249)
T ss_pred CCCchHHH-----HHHHHHHHHhhcCcceEEEEc
Confidence 45655543 445677778887777654444
No 283
>TIGR03025 EPS_sugtrans exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase. Certain closely related transferase enzymes such as Sinorhizobium ExoY and Lactococcus EpsD lack the N-terminal domain and are not found by this model.
Probab=28.10 E-value=4e+02 Score=24.27 Aligned_cols=42 Identities=19% Similarity=0.178 Sum_probs=25.7
Q ss_pred HHHHHHHHHcCCcEEEEcccCCCCCCchHHHH---HhcCCCcEEEEc
Q 028129 169 AIIGDVADELNLDLVIISMEAIHSKHVDANLL---AEFIPCPVLLLP 212 (213)
Q Consensus 169 ~~Il~~A~e~~aDLIVmG~~g~~~~Gs~~~~v---l~~a~cPVLvVp 212 (213)
+.+.++++++++|-|++..... .......+ ++...|.|.++|
T Consensus 178 ~~l~~~i~~~~id~ViIa~p~~--~~~~~~~ll~~~~~~gv~V~~vP 222 (445)
T TIGR03025 178 DDLVELVRAHRVDEVIIALPLS--EEARILELLLQLRDLGVDVRLVP 222 (445)
T ss_pred HHHHHHHHhCCCCEEEEecCcc--cHHHHHHHHHHHHhcCCEEEEeC
Confidence 5677788888888888876543 22221222 566677777765
No 284
>COG3969 Predicted phosphoadenosine phosphosulfate sulfotransferase [General function prediction only]
Probab=28.04 E-value=1.1e+02 Score=27.86 Aligned_cols=44 Identities=20% Similarity=0.324 Sum_probs=38.0
Q ss_pred hhcCCCcEEEEeeCCCCCCCHHHHHHHHHHHHHHhhcCC-EEEEEEEeCC
Q 028129 79 AFTNFKHLLLPITDQNPYLSEGTRQAAATTAALAKKYGA-DITVVVIDER 127 (213)
Q Consensus 79 ~~~~~k~ILV~vD~~~~~~S~~s~~Al~~A~~LA~~~~a-~L~ll~V~~~ 127 (213)
.+..|.+|.|... |.+.+.-.|..++++|++.+- ++++++++-.
T Consensus 23 if~~f~~VcVSFS-----GGKDS~lmLhL~~~~ar~~~~~~i~VlfiD~E 67 (407)
T COG3969 23 IFNTFPRVCVSFS-----GGKDSGLMLHLVAEVARENGRDKISVLFIDWE 67 (407)
T ss_pred HHhcCCeEEEEec-----CCCchhHHHHHHHHHHHHhCCCceEEEEEcch
Confidence 3467899999999 899999999999999999876 8999988754
No 285
>cd06313 PBP1_ABC_sugar_binding_like_5 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=27.99 E-value=3.4e+02 Score=22.32 Aligned_cols=21 Identities=5% Similarity=-0.137 Sum_probs=14.6
Q ss_pred HHHHHHHHHHcCCcEEEEccc
Q 028129 168 TAIIGDVADELNLDLVIISME 188 (213)
Q Consensus 168 ~~~Il~~A~e~~aDLIVmG~~ 188 (213)
...+++.+.+.++-+|+++..
T Consensus 69 ~~~~i~~~~~~~iPvV~~~~~ 89 (272)
T cd06313 69 LTEAVQKAIARGIPVIDMGTL 89 (272)
T ss_pred hHHHHHHHHHCCCcEEEeCCC
Confidence 355667777777888888763
No 286
>TIGR03023 WcaJ_sugtrans Undecaprenyl-phosphate glucose phosphotransferase. Colanic acid biosynthesis utilizes a glucose-undecaprenyl carrier, knockout of EpsB abolishes incorporation of UDP-glucose into the lipid phase and the C-terminal portion of GumD has been shown to be responsible for the glucosyl-1-transferase activity.
Probab=27.88 E-value=4.2e+02 Score=24.19 Aligned_cols=43 Identities=21% Similarity=0.163 Sum_probs=26.4
Q ss_pred HHHHHHHHHHcCCcEEEEcccCCCCCCchHHHH---HhcCCCcEEEEc
Q 028129 168 TAIIGDVADELNLDLVIISMEAIHSKHVDANLL---AEFIPCPVLLLP 212 (213)
Q Consensus 168 ~~~Il~~A~e~~aDLIVmG~~g~~~~Gs~~~~v---l~~a~cPVLvVp 212 (213)
.+.|.++++++++|.|++..... .......+ ++..+|.|.++|
T Consensus 180 ~~dl~~~i~~~~vd~ViIA~p~~--~~~~~~~ll~~~~~~gv~V~vvP 225 (451)
T TIGR03023 180 LDDLEELIREGEVDEVYIALPLA--AEDRILELLDALEDLTVDVRLVP 225 (451)
T ss_pred HHHHHHHHHhcCCCEEEEeeCcc--cHHHHHHHHHHHHhcCCEEEEeC
Confidence 45677778888888888876543 22222222 455667777665
No 287
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional
Probab=27.80 E-value=3.3e+02 Score=26.59 Aligned_cols=63 Identities=16% Similarity=0.017 Sum_probs=34.8
Q ss_pred HHHHHHHHhCCCCceeEEEEEcccCCchHHHHHHHHHHcCCcEEEEcccCCCCCCchHHHHHhcCC-----CcEEEE
Q 028129 140 SSIRWHLSEGGFQEFRLLERLGEGSSKPTAIIGDVADELNLDLVIISMEAIHSKHVDANLLAEFIP-----CPVLLL 211 (213)
Q Consensus 140 ~~~~~~l~~~g~~~~~v~~~v~~G~~~p~~~Il~~A~e~~aDLIVmG~~g~~~~Gs~~~~vl~~a~-----cPVLvV 211 (213)
+.+...+...|+. +.. ... .++.++..+...+|+|+|...-....|.....-+++.. +|++++
T Consensus 539 ~~l~~~L~~~g~~---v~~-a~~-----~~eal~~~~~~~~Dlvl~D~~mp~~~G~e~~~~ir~~~~~~~~~~ii~~ 606 (779)
T PRK11091 539 IVARSVLEKLGNS---VDV-AMT-----GKEALEMFDPDEYDLVLLDIQLPDMTGLDIARELRERYPREDLPPLVAL 606 (779)
T ss_pred HHHHHHHHHcCCE---EEE-ECC-----HHHHHHHhhcCCCCEEEEcCCCCCCCHHHHHHHHHhccccCCCCcEEEE
Confidence 3344455555655 543 222 23444555677899999987543235665555555432 466654
No 288
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=27.75 E-value=2.2e+02 Score=24.99 Aligned_cols=33 Identities=21% Similarity=0.314 Sum_probs=21.5
Q ss_pred HHHHhCCCCceeEEEEEcccCCchHHHHHHHHHHcCCcEEEE
Q 028129 144 WHLSEGGFQEFRLLERLGEGSSKPTAIIGDVADELNLDLVII 185 (213)
Q Consensus 144 ~~l~~~g~~~~~v~~~v~~G~~~p~~~Il~~A~e~~aDLIVm 185 (213)
+.+++.|+. +...+ +. .+..+.+.+.++|.|++
T Consensus 103 ~~lk~~g~~---v~~~v--~s----~~~a~~a~~~GaD~Ivv 135 (307)
T TIGR03151 103 PRLKENGVK---VIPVV--AS----VALAKRMEKAGADAVIA 135 (307)
T ss_pred HHHHHcCCE---EEEEc--CC----HHHHHHHHHcCCCEEEE
Confidence 345555766 54433 32 34557788889999998
No 289
>PRK08185 hypothetical protein; Provisional
Probab=27.69 E-value=1.8e+02 Score=25.39 Aligned_cols=45 Identities=13% Similarity=0.000 Sum_probs=31.5
Q ss_pred chHHHHHHHHHHcCCcEEEEcccCCCC-CCchH----HHHHhcCCCcEEE
Q 028129 166 KPTAIIGDVADELNLDLVIISMEAIHS-KHVDA----NLLAEFIPCPVLL 210 (213)
Q Consensus 166 ~p~~~Il~~A~e~~aDLIVmG~~g~~~-~Gs~~----~~vl~~a~cPVLv 210 (213)
.-..++++.|++.+..+|+..+.+... .|..- ..+++++.+||.+
T Consensus 24 e~~~avi~AAee~~sPvIl~~~~~~~~~~~~~~~~~~~~~a~~~~vPV~l 73 (283)
T PRK08185 24 CFLRAVVEEAEANNAPAIIAIHPNELDFLGDNFFAYVRERAKRSPVPFVI 73 (283)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCcchhhhccHHHHHHHHHHHHHCCCCEEE
Confidence 478899999999999999998876411 13221 1137888899865
No 290
>TIGR00289 conserved hypothetical protein TIGR00289. Homologous proteins related to MJ0570 of Methanococcus jannaschii include both the apparent orthologs found by this model above the trusted cutoff, the much longer protein YLR143W from Saccharomyces cerevisiae, and second homologous proteins from Archaeoglobus fulgidus and Pyrococcus horikoshii that appear to represent a second orthologous group.
Probab=27.52 E-value=3.7e+02 Score=22.55 Aligned_cols=91 Identities=13% Similarity=0.104 Sum_probs=51.3
Q ss_pred cEEEEeeCCCCCCCHHHHHHHHHHHHHHhhcCCEEEEE-EEeCCCCCChhhHHHHHHHHHHHHHhCCCCceeEEEEEccc
Q 028129 85 HLLLPITDQNPYLSEGTRQAAATTAALAKKYGADITVV-VIDERQKESLPEHENRLSSIRWHLSEGGFQEFRLLERLGEG 163 (213)
Q Consensus 85 ~ILV~vD~~~~~~S~~s~~Al~~A~~LA~~~~a~L~ll-~V~~~~~~~~~~~~~~l~~~~~~l~~~g~~~~~v~~~v~~G 163 (213)
++++.+. |...+.-|+..+.+- -++.++ +........+-......+.++.+.+.-|++ .......|
T Consensus 2 kv~vl~S-----GGKDS~lAl~~~~~~-----~~V~~L~~~~~~~~~s~~~h~~~~~~~~~qA~algiP---l~~~~~~~ 68 (222)
T TIGR00289 2 KVAVLYS-----GGKDSILALYKALEE-----HEVISLVGVFSENEESYMFHSPNLHLTDLVAEAVGIP---LIKLYTSG 68 (222)
T ss_pred eEEEEec-----CcHHHHHHHHHHHHc-----CeeEEEEEEcCCCCCccccccCCHHHHHHHHHHcCCC---eEEEEcCC
Confidence 4777788 788888777777552 255555 443322111111111123334455566887 44333333
Q ss_pred C-CchHHHHHHHHHHcCCcEEEEccc
Q 028129 164 S-SKPTAIIGDVADELNLDLVIISME 188 (213)
Q Consensus 164 ~-~~p~~~Il~~A~e~~aDLIVmG~~ 188 (213)
. .+-.+.+.+..++.+++-||.|.=
T Consensus 69 ~~e~~~~~l~~~l~~~gv~~vv~GdI 94 (222)
T TIGR00289 69 EEEKEVEDLAGQLGELDVEALCIGAI 94 (222)
T ss_pred chhHHHHHHHHHHHHcCCCEEEECcc
Confidence 1 035566777778889999999984
No 291
>PRK00074 guaA GMP synthase; Reviewed
Probab=27.46 E-value=5.3e+02 Score=24.36 Aligned_cols=92 Identities=15% Similarity=0.177 Sum_probs=51.7
Q ss_pred CcEEEEeeCCCCCCCHHHHHHHHHHHHHHhhcCCEEEEEEEeCCCCCChhhHHHHHHHHHHHH-HhCCCCceeEEEEE--
Q 028129 84 KHLLLPITDQNPYLSEGTRQAAATTAALAKKYGADITVVVIDERQKESLPEHENRLSSIRWHL-SEGGFQEFRLLERL-- 160 (213)
Q Consensus 84 k~ILV~vD~~~~~~S~~s~~Al~~A~~LA~~~~a~L~ll~V~~~~~~~~~~~~~~l~~~~~~l-~~~g~~~~~v~~~v-- 160 (213)
++|++++. |.-+|.-++..+.+. .|.++..++++...... .+ .+++.+.+ +..|++-+-+....
T Consensus 216 ~~vlva~S-----GGvDS~vll~ll~~~---lg~~v~av~vd~g~~~~-~e----~~~~~~~~a~~lgi~~~vvd~~~~f 282 (511)
T PRK00074 216 KKVILGLS-----GGVDSSVAAVLLHKA---IGDQLTCVFVDHGLLRK-NE----AEQVMEMFREHFGLNLIHVDASDRF 282 (511)
T ss_pred CcEEEEeC-----CCccHHHHHHHHHHH---hCCceEEEEEeCCCCCH-HH----HHHHHHHHHHHcCCcEEEEccHHHH
Confidence 78999999 777776666655432 36678888988754221 11 22333222 34455411010000
Q ss_pred ---cccCCch-----------HHHHHHHHHHc-CCcEEEEccc
Q 028129 161 ---GEGSSKP-----------TAIIGDVADEL-NLDLVIISME 188 (213)
Q Consensus 161 ---~~G~~~p-----------~~~Il~~A~e~-~aDLIVmG~~ 188 (213)
..|.+++ ...+.++|+++ ++|.|+-|++
T Consensus 283 ~~~l~g~~~~~~~r~~~~~~~~~~~~~~a~~~~g~~~latGhn 325 (511)
T PRK00074 283 LSALAGVTDPEEKRKIIGREFIEVFEEEAKKLGGVKFLAQGTL 325 (511)
T ss_pred HHhccCCCCcHHhhhhhhHHHHHHHHHHHHHccCCCEEEECCC
Confidence 0111012 45567889998 9999999983
No 292
>cd01998 tRNA_Me_trans tRNA methyl transferase. This family represents tRNA(5-methylaminomethyl-2-thiouridine)-methyltransferase which is involved in the biosynthesis of the modified nucleoside 5-methylaminomethyl-2-thiouridine present in the wobble position of some tRNAs. This family of enzyme only presents in bacteria and eukaryote. The archaeal counterpart of this enzyme performs same function, but is completely unrelated in sequence.
Probab=27.42 E-value=4.5e+02 Score=23.44 Aligned_cols=23 Identities=22% Similarity=0.141 Sum_probs=19.3
Q ss_pred HHHHHHHHHHcCCcEEEEcccCC
Q 028129 168 TAIIGDVADELNLDLVIISMEAI 190 (213)
Q Consensus 168 ~~~Il~~A~e~~aDLIVmG~~g~ 190 (213)
...+.++|+++++|.|+.|++.+
T Consensus 102 f~~l~~~A~~~g~~~IatGHya~ 124 (349)
T cd01998 102 FGALLDYAKKLGADYIATGHYAR 124 (349)
T ss_pred HHHHHHHHHHcCcCEEEECCcCC
Confidence 45667889999999999999764
No 293
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=27.24 E-value=3.3e+02 Score=22.93 Aligned_cols=46 Identities=24% Similarity=0.386 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHhCCCCceeEEEEEcc-cCCchHHHHHHHHHHcCCcEEEEccc
Q 028129 137 NRLSSIRWHLSEGGFQEFRLLERLGE-GSSKPTAIIGDVADELNLDLVIISME 188 (213)
Q Consensus 137 ~~l~~~~~~l~~~g~~~~~v~~~v~~-G~~~p~~~Il~~A~e~~aDLIVmG~~ 188 (213)
+..+.+++.+++.|+.+- + .+.. |+ ..+.+.+.. .-..|+|.|=+-
T Consensus 95 e~~~~A~~n~~~ag~~~~-i--~~~~~gd--al~~l~~~~-~~~fDliFIDad 141 (219)
T COG4122 95 ERAEIARENLAEAGVDDR-I--ELLLGGD--ALDVLSRLL-DGSFDLVFIDAD 141 (219)
T ss_pred HHHHHHHHHHHHcCCcce-E--EEEecCc--HHHHHHhcc-CCCccEEEEeCC
Confidence 444556667788888731 2 2333 55 777777622 347899999664
No 294
>cd06271 PBP1_AglR_RafR_like Ligand-binding domain of DNA transcription repressors specific for raffinose (RafR) and alpha-glucosides (AglR) which are members of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressors specific for raffinose (RafR) and alpha-glucosides (AglR) which are members of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the represso
Probab=27.17 E-value=3.3e+02 Score=21.87 Aligned_cols=18 Identities=11% Similarity=-0.092 Sum_probs=13.1
Q ss_pred HHHHHHHcCCcEEEEccc
Q 028129 171 IGDVADELNLDLVIISME 188 (213)
Q Consensus 171 Il~~A~e~~aDLIVmG~~ 188 (213)
.++.+++.++-+|+++..
T Consensus 74 ~~~~~~~~~ipvV~~~~~ 91 (268)
T cd06271 74 RVALLLERGFPFVTHGRT 91 (268)
T ss_pred HHHHHHhcCCCEEEECCc
Confidence 346667778888888764
No 295
>TIGR01520 FruBisAldo_II_A fructose-bisphosphate aldolase, class II, yeast/E. coli subtype. This model represents one of two deeply split, architecturally distinct clades of the family that includes class II fructose-bisphosphate aldolases, tagatose-bisphosphate aldolases, and related uncharacterized proteins. This family is well-conserved and includes characterized FBA from Saccharomyces cerevisiae, Escherichia coli, and Corynebacterium glutamicum. Proteins outside the scope of this model may also be designated as class II fructose-bisphosphate aldolases, but are well separated in an alignment-based phylogenetic tree.
Probab=27.06 E-value=3.1e+02 Score=24.92 Aligned_cols=46 Identities=11% Similarity=0.016 Sum_probs=30.6
Q ss_pred HHHHHHHhCCCCceeEEEEEcccCCchHHHHHHHHHHcCCcEEEEcccCC
Q 028129 141 SIRWHLSEGGFQEFRLLERLGEGSSKPTAIIGDVADELNLDLVIISMEAI 190 (213)
Q Consensus 141 ~~~~~l~~~g~~~~~v~~~v~~G~~~p~~~Il~~A~e~~aDLIVmG~~g~ 190 (213)
++.....+.++. +-..-.... .-..++++.|++.+..+|+..+.+.
T Consensus 17 ~lL~~A~~~~yA---VgAfNv~n~-e~~~Avi~AAEe~~sPvIlq~s~~~ 62 (357)
T TIGR01520 17 KLFQYAKENNFA---IPAINCTSS-STINAALEAAADVKSPIIIQFSNGG 62 (357)
T ss_pred HHHHHHHHCCce---EEEEEeCCH-HHHHHHHHHHHHhCCCEEEEcCcch
Confidence 333334444544 444333333 4789999999999999999987653
No 296
>TIGR03573 WbuX N-acetyl sugar amidotransferase. This enzyme has been implicated in the formation of the acetamido moiety (sugar-NC(=NH)CH3) which is found on some exopolysaccharides and is positively charged at neutral pH. The reaction involves ligation of ammonia with a sugar N-acetyl group, displacing water. In E. coli (O145 strain) and Pseudomonas aeruginosa (O12 strain) this gene is known as wbuX and ifnA respectively and likely acts on sialic acid. In Campylobacter jejuni, the gene is known as pseA and acts on pseudaminic acid in the process of flagellin glycosylation. In other Pseudomonas strains and various organisms it is unclear what the identity of the sugar substrate is, and in fact, the phylogenetic tree of this family sports a considerably deep branching suggestive of possible major differences in substrate structure. Nevertheless, the family is characterized by a conserved tetracysteine motif (CxxC.....[GN]xCxxC) possibly indicative of a metal binding site, as well as an
Probab=27.03 E-value=4.5e+02 Score=23.34 Aligned_cols=23 Identities=26% Similarity=0.212 Sum_probs=19.6
Q ss_pred hHHHHHHHHHHcCCcEEEEcccC
Q 028129 167 PTAIIGDVADELNLDLVIISMEA 189 (213)
Q Consensus 167 p~~~Il~~A~e~~aDLIVmG~~g 189 (213)
....+.++|+++++.+|+-|...
T Consensus 148 ~~~~l~~~A~~~gi~~Il~G~~~ 170 (343)
T TIGR03573 148 IFASVYQVALKFNIPLIIWGENI 170 (343)
T ss_pred HHHHHHHHHHHhCCCEEEeCCCH
Confidence 45677899999999999999965
No 297
>PRK10336 DNA-binding transcriptional regulator QseB; Provisional
Probab=26.99 E-value=3e+02 Score=21.28 Aligned_cols=15 Identities=20% Similarity=0.248 Sum_probs=8.3
Q ss_pred HHHHcCCcEEEEccc
Q 028129 174 VADELNLDLVIISME 188 (213)
Q Consensus 174 ~A~e~~aDLIVmG~~ 188 (213)
.....++|+|++...
T Consensus 39 ~~~~~~~dlvild~~ 53 (219)
T PRK10336 39 ALYSAPYDAVILDLT 53 (219)
T ss_pred HHhhCCCCEEEEECC
Confidence 334455666666553
No 298
>cd06296 PBP1_CatR_like Ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group includes the ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=26.92 E-value=3.4e+02 Score=21.93 Aligned_cols=77 Identities=12% Similarity=0.022 Sum_probs=39.6
Q ss_pred CHHHHHHHHHHHHHHhhcCCEEEEEEEeCCCCCChhhHHHHHHHHHHHHHhCCCCceeEEEEEcccCCchHHHHHHHHHH
Q 028129 98 SEGTRQAAATTAALAKKYGADITVVVIDERQKESLPEHENRLSSIRWHLSEGGFQEFRLLERLGEGSSKPTAIIGDVADE 177 (213)
Q Consensus 98 S~~s~~Al~~A~~LA~~~~a~L~ll~V~~~~~~~~~~~~~~l~~~~~~l~~~g~~~~~v~~~v~~G~~~p~~~Il~~A~e 177 (213)
++.-...+......+++.|-++.++..... .+... +..+.+...++. -.... +. ++....++.+.+
T Consensus 11 ~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~-------~~~~~-~~i~~l~~~~~d---giii~--~~-~~~~~~~~~~~~ 76 (270)
T cd06296 11 SPWASEVLRGVEEAAAAAGYDVVLSESGRR-------TSPER-QWVERLSARRTD---GVILV--TP-ELTSAQRAALRR 76 (270)
T ss_pred CccHHHHHHHHHHHHHHcCCeEEEecCCCc-------hHHHH-HHHHHHHHcCCC---EEEEe--cC-CCChHHHHHHhc
Confidence 344455555556667777766655433221 11111 222234444555 22222 11 233455777788
Q ss_pred cCCcEEEEccc
Q 028129 178 LNLDLVIISME 188 (213)
Q Consensus 178 ~~aDLIVmG~~ 188 (213)
.++-+|.++..
T Consensus 77 ~~ipvV~i~~~ 87 (270)
T cd06296 77 TGIPFVVVDPA 87 (270)
T ss_pred CCCCEEEEecc
Confidence 88999999875
No 299
>COG0788 PurU Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism]
Probab=26.87 E-value=4.2e+02 Score=23.30 Aligned_cols=133 Identities=15% Similarity=0.152 Sum_probs=65.0
Q ss_pred CcchhhhhhhhcccCCCCCcccchhhhhhcCCCcEEEEeeCCCCCCCHHHHHHHHHHHH-HHhhcCCEEEEEEEeCCCCC
Q 028129 52 SLFPRFRRIGHKAKVKSPESEINSVAEAFTNFKHLLLPITDQNPYLSEGTRQAAATTAA-LAKKYGADITVVVIDERQKE 130 (213)
Q Consensus 52 ~~~~~~~r~~~~a~~~~~~~~~~~~~~~~~~~k~ILV~vD~~~~~~S~~s~~Al~~A~~-LA~~~~a~L~ll~V~~~~~~ 130 (213)
|+-..+-..+.+.+|--.....--......-|-++-+-.+ +.+...++++.+.. ++..++....+.........
T Consensus 19 GiVaais~~l~~~g~NI~~~~qf~D~~~g~FFmR~~f~~~-----~~~~~~~~l~~~f~~~a~~f~m~~~~~~~~~~~ri 93 (287)
T COG0788 19 GIVAAISGFLAEHGCNIVDSDQFDDPETGRFFMRVEFEGE-----GGPLDREALRAAFAPLAEEFGMDWRLHDAAQRKRI 93 (287)
T ss_pred CcHHHHHHHHHHcCCceeecccccccccCeEEEEEEEecC-----CCcccHHHHHHHHHHHHHhhCceeEEeccccCceE
Confidence 5666666666666654432222111111222455655555 34456667766665 78877766555432222111
Q ss_pred Ch--hhHHHHHHHH-----------------------HHHHHhCCCCceeEEEEEcccCCchHHHHHHHHHHcCCcEEEE
Q 028129 131 SL--PEHENRLSSI-----------------------RWHLSEGGFQEFRLLERLGEGSSKPTAIIGDVADELNLDLVII 185 (213)
Q Consensus 131 ~~--~~~~~~l~~~-----------------------~~~l~~~g~~~~~v~~~v~~G~~~p~~~Il~~A~e~~aDLIVm 185 (213)
.+ ....-.+..+ +......|++ |+......+......+.+++..+++++||||+
T Consensus 94 ~i~VSK~~HCL~DLL~r~~~g~L~~eI~~VIsNH~dl~~~v~~~~IP-fhhip~~~~~k~e~E~~~~~ll~~~~~DlvVL 172 (287)
T COG0788 94 AILVSKEDHCLGDLLYRWRIGELPAEIVAVISNHDDLRPLVERFDIP-FHHIPVTKENKAEAEARLLELLEEYGADLVVL 172 (287)
T ss_pred EEEEechHHHHHHHHHHHhcCCcCCceEEEEcCCHHHHHHHHHcCCC-eeeccCCCCcchHHHHHHHHHHHHhCCCEEee
Confidence 00 0011111121 2223444665 22111111101135678999999999999999
Q ss_pred cccCC
Q 028129 186 SMEAI 190 (213)
Q Consensus 186 G~~g~ 190 (213)
..+-+
T Consensus 173 ARYMq 177 (287)
T COG0788 173 ARYMQ 177 (287)
T ss_pred hhhHh
Confidence 88643
No 300
>PRK13015 3-dehydroquinate dehydratase; Reviewed
Probab=26.87 E-value=3.2e+02 Score=21.59 Aligned_cols=69 Identities=14% Similarity=0.020 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHhCCCCceeEEEEEcccCCchHHHHHHHHHH--cCCcEEEEcccCCCCCCchHH-HHHhcCCCcEEEEc
Q 028129 136 ENRLSSIRWHLSEGGFQEFRLLERLGEGSSKPTAIIGDVADE--LNLDLVIISMEAIHSKHVDAN-LLAEFIPCPVLLLP 212 (213)
Q Consensus 136 ~~~l~~~~~~l~~~g~~~~~v~~~v~~G~~~p~~~Il~~A~e--~~aDLIVmG~~g~~~~Gs~~~-~vl~~a~cPVLvVp 212 (213)
++..+.+++...+.|++ ++...- +-.-+|++..++ .++|-||+-.-+.... |.+. --+....+|++=|.
T Consensus 29 ~~i~~~~~~~a~~~g~~---~~~~QS----N~EGelId~i~~a~~~~dgiIINpga~THt-SiAl~DAl~~~~~P~VEVH 100 (146)
T PRK13015 29 ADVEALCRAAAEALGLE---VEFRQS----NHEGELIDWIHEARGDVAGIVINPGAYTHT-SVAIRDALAALELPVIEVH 100 (146)
T ss_pred HHHHHHHHHHHHHcCCE---EEEEee----CcHHHHHHHHHHhhhcCCEEEEcchHHhhh-HHHHHHHHHcCCCCEEEEE
Confidence 33344445556666776 655442 133445554433 2578999844332001 1111 12667788887553
No 301
>cd06318 PBP1_ABC_sugar_binding_like_9 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=26.85 E-value=3.5e+02 Score=22.07 Aligned_cols=18 Identities=11% Similarity=0.128 Sum_probs=11.3
Q ss_pred HHHHHHHHcCCcEEEEcc
Q 028129 170 IIGDVADELNLDLVIISM 187 (213)
Q Consensus 170 ~Il~~A~e~~aDLIVmG~ 187 (213)
.+++.+.+.++=+|+++.
T Consensus 71 ~~i~~~~~~~iPvV~~~~ 88 (282)
T cd06318 71 PAVAAAKAAGVPVVVVDS 88 (282)
T ss_pred HHHHHHHHCCCCEEEecC
Confidence 445666666666777765
No 302
>cd06309 PBP1_YtfQ_like Periplasmic binding domain of ABC-type YtfQ-like transport systems. Periplasmic binding domain of ABC-type YtfQ-like transport systems. The YtfQ protein from Escherichia coli is up-regulated under glucose-limited conditions and shares homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their ligand specificity is not determined experimentally.
Probab=26.73 E-value=3.5e+02 Score=22.03 Aligned_cols=79 Identities=14% Similarity=0.141 Sum_probs=37.7
Q ss_pred CHHHHHHHHHHHHHHhhcCCEEEEEEEeCCCCCChhhHHHHHHHHHHHHHhCCCCceeEEEEEcccCCchHHHHHHHHHH
Q 028129 98 SEGTRQAAATTAALAKKYGADITVVVIDERQKESLPEHENRLSSIRWHLSEGGFQEFRLLERLGEGSSKPTAIIGDVADE 177 (213)
Q Consensus 98 S~~s~~Al~~A~~LA~~~~a~L~ll~V~~~~~~~~~~~~~~l~~~~~~l~~~g~~~~~v~~~v~~G~~~p~~~Il~~A~e 177 (213)
++.....++...+.+++.|-++.+..... +.+...+.+ ..+...++. -........ +....+++.+.+
T Consensus 11 ~~~~~~~~~~~~~~a~~~g~~~~~~~~~~-------~~~~~~~~i-~~l~~~~vd---giIi~~~~~-~~~~~~i~~~~~ 78 (273)
T cd06309 11 SPWRTAETKSIKDAAEKRGFDLKFADAQQ-------KQENQISAI-RSFIAQGVD---VIILAPVVE-TGWDPVLKEAKA 78 (273)
T ss_pred CHHHHHHHHHHHHHHHhcCCEEEEeCCCC-------CHHHHHHHH-HHHHHcCCC---EEEEcCCcc-ccchHHHHHHHH
Confidence 34455566666667777776665532211 111212222 223333444 221111111 122456677777
Q ss_pred cCCcEEEEccc
Q 028129 178 LNLDLVIISME 188 (213)
Q Consensus 178 ~~aDLIVmG~~ 188 (213)
.++-+|+++..
T Consensus 79 ~~iPvV~~~~~ 89 (273)
T cd06309 79 AGIPVILVDRG 89 (273)
T ss_pred CCCCEEEEecC
Confidence 78888888764
No 303
>PRK00766 hypothetical protein; Provisional
Probab=26.53 E-value=1.4e+02 Score=24.65 Aligned_cols=55 Identities=16% Similarity=0.104 Sum_probs=34.7
Q ss_pred EEEEEcccCCchHHHHHHHHHH----cCCcEEEEcccCC-CCCCchHHHHHhcCCCcEEEE
Q 028129 156 LLERLGEGSSKPTAIIGDVADE----LNLDLVIISMEAI-HSKHVDANLLAEFIPCPVLLL 211 (213)
Q Consensus 156 v~~~v~~G~~~p~~~Il~~A~e----~~aDLIVmG~~g~-~~~Gs~~~~vl~~a~cPVLvV 211 (213)
.....+.|. |..++|++..+. .++.+|.+..-.. +.+-..-..+-++...||++|
T Consensus 45 ~~~itvdG~-DaT~~i~~mv~~~~~r~~i~~V~L~Git~agFNvvD~~~l~~~tg~PVI~V 104 (194)
T PRK00766 45 SRWITVDGL-DATEAIIEMVNSSRHKGQLRVIMLDGITYGGFNVVDIEELYRETGLPVIVV 104 (194)
T ss_pred EEEEEECCc-cHHHHHHHHHHhcccccceEEEEECCEeeeeeEEecHHHHHHHHCCCEEEE
Confidence 334456787 899999998876 2455666644322 001234455678888999887
No 304
>cd00946 FBP_aldolase_IIA Class II Type A, Fructose-1,6-bisphosphate (FBP) aldolases. The enzyme catalyses the zinc-dependent, reversible aldol condensation of dihydroxyacetone phosphate with glyceraldehyde-3-phosphate to form fructose-1,6-bisphosphate. FBP aldolase is homodimeric and used in gluconeogenesis and glycolysis. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=26.48 E-value=3.4e+02 Score=24.52 Aligned_cols=45 Identities=13% Similarity=0.087 Sum_probs=30.4
Q ss_pred HHHHHHHhCCCCceeEEEEEcccCCchHHHHHHHHHHcCCcEEEEcccC
Q 028129 141 SIRWHLSEGGFQEFRLLERLGEGSSKPTAIIGDVADELNLDLVIISMEA 189 (213)
Q Consensus 141 ~~~~~l~~~g~~~~~v~~~v~~G~~~p~~~Il~~A~e~~aDLIVmG~~g 189 (213)
++.....+.++. +-..-.... .-..+|++.|++.+..+|+.-+.+
T Consensus 6 ~iL~~A~~~~yA---V~AfN~~n~-e~~~avi~AAee~~sPvIiq~s~~ 50 (345)
T cd00946 6 KLFDYAKENGFA---IPAVNCTSS-STINAVLEAARDAKSPIIIQFSNG 50 (345)
T ss_pred HHHHHHHHCCce---EEEEeeCCH-HHHHHHHHHHHHhCCCEEEECCcc
Confidence 333334444544 444333333 578999999999999999998876
No 305
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=26.45 E-value=4.1e+02 Score=22.75 Aligned_cols=81 Identities=20% Similarity=0.231 Sum_probs=50.1
Q ss_pred CCHHHHHHHHHHHHHHhhcCCEEEEEEEeCCCCCChhhHHHHHHHHHHHHHhCCCCceeEEEEEcccCCchHHHH---HH
Q 028129 97 LSEGTRQAAATTAALAKKYGADITVVVIDERQKESLPEHENRLSSIRWHLSEGGFQEFRLLERLGEGSSKPTAII---GD 173 (213)
Q Consensus 97 ~S~~s~~Al~~A~~LA~~~~a~L~ll~V~~~~~~~~~~~~~~l~~~~~~l~~~g~~~~~v~~~v~~G~~~p~~~I---l~ 173 (213)
|+..+.-+...|..+++ .|.++.++..+.... ...+.+.++....|+. +.. ...+. +|...+ ++
T Consensus 82 G~GKTTt~akLA~~l~~-~g~~V~li~~D~~r~-------~a~~ql~~~~~~~~i~---~~~-~~~~~-dp~~~~~~~l~ 148 (272)
T TIGR00064 82 GVGKTTTIAKLANKLKK-QGKSVLLAAGDTFRA-------AAIEQLEEWAKRLGVD---VIK-QKEGA-DPAAVAFDAIQ 148 (272)
T ss_pred CCcHHHHHHHHHHHHHh-cCCEEEEEeCCCCCH-------HHHHHHHHHHHhCCeE---EEe-CCCCC-CHHHHHHHHHH
Confidence 88888889999988864 466777776664211 1123344444555555 332 22233 466543 34
Q ss_pred HHHHcCCcEEEEcccCC
Q 028129 174 VADELNLDLVIISMEAI 190 (213)
Q Consensus 174 ~A~e~~aDLIVmG~~g~ 190 (213)
.+...++|+|++=+.|+
T Consensus 149 ~~~~~~~D~ViIDT~G~ 165 (272)
T TIGR00064 149 KAKARNIDVVLIDTAGR 165 (272)
T ss_pred HHHHCCCCEEEEeCCCC
Confidence 56678899999999887
No 306
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=26.15 E-value=3.3e+02 Score=24.32 Aligned_cols=39 Identities=28% Similarity=0.452 Sum_probs=24.6
Q ss_pred hHHHHHHHHHHcCCcEEEEcccCCCCCCchHHHHHhcCCCcE
Q 028129 167 PTAIIGDVADELNLDLVIISMEAIHSKHVDANLLAEFIPCPV 208 (213)
Q Consensus 167 p~~~Il~~A~e~~aDLIVmG~~g~~~~Gs~~~~vl~~a~cPV 208 (213)
-.++|.+.+++.++|+||.-.. . +++...-+-+...|+|
T Consensus 54 k~~e~~~~~~~~~~~~vi~~~~-l--~p~q~~nl~~~~~~~v 92 (351)
T TIGR03156 54 KVEEIAELVEELEADLVIFDHE-L--SPSQERNLEKALGCRV 92 (351)
T ss_pred HHHHHHHHHHhcCCCEEEECCC-C--CHHHHHHHHHHhCCcc
Confidence 5788899999999998888643 2 3333333333334444
No 307
>KOG3111 consensus D-ribulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=26.13 E-value=4e+02 Score=22.40 Aligned_cols=67 Identities=19% Similarity=0.300 Sum_probs=46.6
Q ss_pred HHHHHHHhhcCCEEEEEEEeCCCCCChhhHHHHHHHHHHHHHhCCCCceeEEEEEcccCCchHHHHHHHHHHcCCcEEEE
Q 028129 106 ATTAALAKKYGADITVVVIDERQKESLPEHENRLSSIRWHLSEGGFQEFRLLERLGEGSSKPTAIIGDVADELNLDLVII 185 (213)
Q Consensus 106 ~~A~~LA~~~~a~L~ll~V~~~~~~~~~~~~~~l~~~~~~l~~~g~~~~~v~~~v~~G~~~p~~~Il~~A~e~~aDLIVm 185 (213)
+|.-++|+ .|+.+.-+|....+ ...++.+.+++.|+. +-..+.-|. +.+.|..+++. +|++.+
T Consensus 78 q~V~~~a~-agas~~tfH~E~~q---------~~~~lv~~ir~~Gmk---~G~alkPgT--~Ve~~~~~~~~--~D~vLv 140 (224)
T KOG3111|consen 78 QWVDQMAK-AGASLFTFHYEATQ---------KPAELVEKIREKGMK---VGLALKPGT--PVEDLEPLAEH--VDMVLV 140 (224)
T ss_pred HHHHHHHh-cCcceEEEEEeecc---------CHHHHHHHHHHcCCe---eeEEeCCCC--cHHHHHHhhcc--ccEEEE
Confidence 45555554 36666666665432 134556677888998 888888897 99999999975 888877
Q ss_pred cccC
Q 028129 186 SMEA 189 (213)
Q Consensus 186 G~~g 189 (213)
-+-.
T Consensus 141 MtVe 144 (224)
T KOG3111|consen 141 MTVE 144 (224)
T ss_pred EEec
Confidence 6643
No 308
>cd06277 PBP1_LacI_like_1 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=26.13 E-value=3.6e+02 Score=21.88 Aligned_cols=73 Identities=18% Similarity=0.226 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHhhcCCEEEEEEEeCCCCCChhhHHHHHHHHHHHHHhCCCCceeEEEEEcccCCchHHHHHHHHHHcCC
Q 028129 101 TRQAAATTAALAKKYGADITVVVIDERQKESLPEHENRLSSIRWHLSEGGFQEFRLLERLGEGSSKPTAIIGDVADELNL 180 (213)
Q Consensus 101 s~~Al~~A~~LA~~~~a~L~ll~V~~~~~~~~~~~~~~l~~~~~~l~~~g~~~~~v~~~v~~G~~~p~~~Il~~A~e~~a 180 (213)
....++...+.++..|..+.+...+... +. ...+...+...+++ ..... +. +. ..+++.+.+.++
T Consensus 17 ~~~~~~~i~~~~~~~g~~~~~~~~~~~~-------~~-~~~~~~~l~~~~vd---giii~--~~-~~-~~~~~~l~~~~i 81 (268)
T cd06277 17 YSEIYRAIEEEAKKYGYNLILKFVSDED-------EE-EFELPSFLEDGKVD---GIILL--GG-IS-TEYIKEIKELGI 81 (268)
T ss_pred HHHHHHHHHHHHHHcCCEEEEEeCCCCh-------HH-HHHHHHHHHHCCCC---EEEEe--CC-CC-hHHHHHHhhcCC
Confidence 3444444455566777777665443211 11 12223334444555 22222 22 12 344777778889
Q ss_pred cEEEEccc
Q 028129 181 DLVIISME 188 (213)
Q Consensus 181 DLIVmG~~ 188 (213)
-+|.++..
T Consensus 82 pvV~~~~~ 89 (268)
T cd06277 82 PFVLVDHY 89 (268)
T ss_pred CEEEEccC
Confidence 99999864
No 309
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=26.08 E-value=1.5e+02 Score=24.57 Aligned_cols=40 Identities=28% Similarity=0.376 Sum_probs=30.6
Q ss_pred HHHHhCCCCceeEEEEEcccCCchHHHHHHHHHHcCCcEEEEcccC
Q 028129 144 WHLSEGGFQEFRLLERLGEGSSKPTAIIGDVADELNLDLVIISMEA 189 (213)
Q Consensus 144 ~~l~~~g~~~~~v~~~v~~G~~~p~~~Il~~A~e~~aDLIVmG~~g 189 (213)
-.+...|++ +.. + |.+-|.+.|++.++++++|+|.+..--
T Consensus 110 ~~l~~~G~~---Vi~-L--G~~vp~e~~v~~~~~~~~~~V~lS~~~ 149 (213)
T cd02069 110 VILSNNGYE---VID-L--GVMVPIEKILEAAKEHKADIIGLSGLL 149 (213)
T ss_pred HHHHhCCCE---EEE-C--CCCCCHHHHHHHHHHcCCCEEEEccch
Confidence 456778888 552 3 322489999999999999999998753
No 310
>PLN00022 electron transfer flavoprotein subunit alpha; Provisional
Probab=25.96 E-value=5e+02 Score=23.53 Aligned_cols=95 Identities=8% Similarity=0.062 Sum_probs=54.1
Q ss_pred cEEEEeeCCCCCCCHHHHHHHHHHHHHHhhcCCEEEEEEEeCCCCCChhhHHHHHHHHHHHHHh--CCCCcee-EEE-EE
Q 028129 85 HLLLPITDQNPYLSEGTRQAAATTAALAKKYGADITVVVIDERQKESLPEHENRLSSIRWHLSE--GGFQEFR-LLE-RL 160 (213)
Q Consensus 85 ~ILV~vD~~~~~~S~~s~~Al~~A~~LA~~~~a~L~ll~V~~~~~~~~~~~~~~l~~~~~~l~~--~g~~~~~-v~~-~v 160 (213)
.|+|-.+.......+.+.+++..|..|+.. +.++.++.+.... +.+ .....+.. .|.+..- +.. .+
T Consensus 28 ~i~V~~E~~~g~l~~~slEll~~Ar~La~~-~~~v~avv~g~~~-----~~~----~~a~~l~~~~~Gad~V~~~~~~~l 97 (356)
T PLN00022 28 STLVVAEHEGGSVKPQSLSAVAAAKSLLGE-SSPISLLLAGSGP-----SLQ----QAASHAASSHPSVSEVLVADSDKL 97 (356)
T ss_pred eEEEEEeCcCCEeCHHHHHHHHHHHHhcCC-CCceEEEEEcCCc-----chh----hHHHHHhhccCCCCEEEEecCchh
Confidence 578888854445677888999988888753 2456555443221 001 11122332 3554211 100 01
Q ss_pred --cccCCchHHHHHHHHHHcCCcEEEEcccCC
Q 028129 161 --GEGSSKPTAIIGDVADELNLDLVIISMEAI 190 (213)
Q Consensus 161 --~~G~~~p~~~Il~~A~e~~aDLIVmG~~g~ 190 (213)
...+ .-.+.+.+.+++.++++|++|+...
T Consensus 98 ~~y~~e-~~a~al~~li~~~~P~~vL~~~T~~ 128 (356)
T PLN00022 98 THPLAE-PWAKLVVLAQQKGGYSHILAASTSF 128 (356)
T ss_pred cccChH-HHHHHHHHHHHhcCCCEEEECCCCc
Confidence 0112 2456788888999999999999654
No 311
>PRK09197 fructose-bisphosphate aldolase; Provisional
Probab=25.81 E-value=2.7e+02 Score=25.25 Aligned_cols=46 Identities=17% Similarity=0.111 Sum_probs=31.3
Q ss_pred HHHHHHHHhCCCCceeEEEEEcccCCchHHHHHHHHHHcCCcEEEEcccC
Q 028129 140 SSIRWHLSEGGFQEFRLLERLGEGSSKPTAIIGDVADELNLDLVIISMEA 189 (213)
Q Consensus 140 ~~~~~~l~~~g~~~~~v~~~v~~G~~~p~~~Il~~A~e~~aDLIVmG~~g 189 (213)
.++.....+.++. +-..-..+. .-..+|++.|++.+..+|+..+.+
T Consensus 10 k~~L~~A~~~~yA---V~AfNv~n~-e~~~avi~AAee~~sPVIlq~s~~ 55 (350)
T PRK09197 10 QEMFDRAKENGFA---LPAVNVVGT-DSINAVLEGAAEAKSPVIIQFSNG 55 (350)
T ss_pred HHHHHHHHHCCce---EEEEEeCCH-HHHHHHHHHHHHHCCCEEEEcChh
Confidence 3333444555554 544433343 578999999999999999998765
No 312
>cd01977 Nitrogenase_VFe_alpha Nitrogenase_VFe_alpha -like: Nitrogenase VFe protein, alpha subunit like. This group contains proteins similar to the alpha subunits of, the VFe protein of the vanadium-dependent (V-) nitrogenase and the FeFe protein of the iron only (Fe-) nitrogenase Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V- and Fe- nitrogenases there is a molybdenum (Mo)-dependent nitrogenase which is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha sub
Probab=25.81 E-value=5.1e+02 Score=23.54 Aligned_cols=83 Identities=8% Similarity=0.061 Sum_probs=45.1
Q ss_pred CCCcEEEEeeCCCCCCCHHHHHHHHHHHHHHhhcCCEEEEEEEeCCCCCChhhHHHHHHHHHHHHHhCCCCceeEEEEEc
Q 028129 82 NFKHLLLPITDQNPYLSEGTRQAAATTAALAKKYGADITVVVIDERQKESLPEHENRLSSIRWHLSEGGFQEFRLLERLG 161 (213)
Q Consensus 82 ~~k~ILV~vD~~~~~~S~~s~~Al~~A~~LA~~~~a~L~ll~V~~~~~~~~~~~~~~l~~~~~~l~~~g~~~~~v~~~v~ 161 (213)
.-|+|.|..| . ..++..+..|.+..|.++..+...... . +..++ .+.... . ....+
T Consensus 287 ~Gk~vai~~~-----~----~~~~~la~~l~~elG~~v~~i~~~~~~------~-~~~~~---~~~~~~-~---~~~~v- 342 (415)
T cd01977 287 KGKKVCIWTG-----G----PKLWHWTKVIEDELGMQVVAMSSKFGH------Q-EDFEK---VIARGG-E---GTIYI- 342 (415)
T ss_pred CCCEEEEECC-----C----chHHHHHHHHHHhcCCEEEEEEEEecc------H-HHHHH---HHHhcC-C---ceEEE-
Confidence 3578888777 2 246777777777889888654322111 0 11111 122111 1 11122
Q ss_pred ccCCchHHHHHHHHHHcCCcEEEEcccCC
Q 028129 162 EGSSKPTAIIGDVADELNLDLVIISMEAI 190 (213)
Q Consensus 162 ~G~~~p~~~Il~~A~e~~aDLIVmG~~g~ 190 (213)
|+ ....++.+..++.++|||+=+++++
T Consensus 343 -~d-~~~~e~~~~~~~~~pdliig~s~~~ 369 (415)
T cd01977 343 -DD-PNELEFFEILEMLKPDIILTGPRVG 369 (415)
T ss_pred -eC-CCHHHHHHHHHhcCCCEEEecCccc
Confidence 32 2344666677888999988777765
No 313
>TIGR00619 sbcd exonuclease SbcD. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=25.70 E-value=1.6e+02 Score=24.85 Aligned_cols=6 Identities=17% Similarity=0.030 Sum_probs=2.8
Q ss_pred EEcccC
Q 028129 184 IISMEA 189 (213)
Q Consensus 184 VmG~~g 189 (213)
|.|.|.
T Consensus 81 i~GNHD 86 (253)
T TIGR00619 81 ISGNHD 86 (253)
T ss_pred EccCCC
Confidence 335554
No 314
>PF11215 DUF3010: Protein of unknown function (DUF3010); InterPro: IPR021378 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=25.69 E-value=2.3e+02 Score=22.22 Aligned_cols=43 Identities=14% Similarity=0.117 Sum_probs=27.1
Q ss_pred HHHHHHHHHcCCcEEEEcccCC---CCCCchHHHH----HhcCCCcEEEE
Q 028129 169 AIIGDVADELNLDLVIISMEAI---HSKHVDANLL----AEFIPCPVLLL 211 (213)
Q Consensus 169 ~~Il~~A~e~~aDLIVmG~~g~---~~~Gs~~~~v----l~~a~cPVLvV 211 (213)
..+.++.+++++|-||+-.|.. ..+|...+.+ -.-..|+|-+|
T Consensus 51 ~~f~kl~~dy~Vd~VvIk~R~~KGKfAGga~~FKmEaaIQL~~~~~V~lv 100 (138)
T PF11215_consen 51 FTFAKLMEDYKVDKVVIKERATKGKFAGGAVGFKMEAAIQLIDDVEVELV 100 (138)
T ss_pred HHHHHHHHHcCCCEEEEEecccCCCccCCchhHHHHHHHHhcCCCcEEEE
Confidence 4666778889999999977643 2234444443 33356777665
No 315
>TIGR00167 cbbA ketose-bisphosphate aldolases. fructose-bisphosphate and tagatose-bisphosphate aldolase.
Probab=25.67 E-value=3.7e+02 Score=23.48 Aligned_cols=63 Identities=16% Similarity=0.107 Sum_probs=39.2
Q ss_pred HHHHhCCCCceeEEEEEcccCCchHHHHHHHHHHcCCcEEEEcccCCCC--CCchHH-----HHHhcC--CCcEEE
Q 028129 144 WHLSEGGFQEFRLLERLGEGSSKPTAIIGDVADELNLDLVIISMEAIHS--KHVDAN-----LLAEFI--PCPVLL 210 (213)
Q Consensus 144 ~~l~~~g~~~~~v~~~v~~G~~~p~~~Il~~A~e~~aDLIVmG~~g~~~--~Gs~~~-----~vl~~a--~cPVLv 210 (213)
....+.++. +-..-.... .-..+|++.|++.+..+|+..+.+... .|.... ..++++ .+||.+
T Consensus 11 ~~A~~~~yA---V~AfN~~n~-e~~~avi~AAee~~sPvIlq~~~~~~~~~~g~~~~~~~~~~~a~~~~~~VPV~l 82 (288)
T TIGR00167 11 QDAKEEGYA---IPAFNINNL-ETINAVLEAAAEEKSPVIIQFSNGAAKYIAGLGAISAMVKAMSEAYPYGVPVAL 82 (288)
T ss_pred HHHHHCCce---EEEEEECCH-HHHHHHHHHHHHHCCCEEEECCcchhhccCCHHHHHHHHHHHHHhccCCCcEEE
Confidence 334444544 544333333 578899999999999999998765311 232211 127778 888865
No 316
>PRK12822 phospho-2-dehydro-3-deoxyheptonate aldolase; Provisional
Probab=25.66 E-value=3.1e+02 Score=24.95 Aligned_cols=109 Identities=20% Similarity=0.208 Sum_probs=57.8
Q ss_pred CcEEEEeeCCCCCCCHHHHHHHHHHHHHHhh---cCCEEEEE-EE--eCCC----CCCh---------hhHHHHHHHHHH
Q 028129 84 KHLLLPITDQNPYLSEGTRQAAATTAALAKK---YGADITVV-VI--DERQ----KESL---------PEHENRLSSIRW 144 (213)
Q Consensus 84 k~ILV~vD~~~~~~S~~s~~Al~~A~~LA~~---~~a~L~ll-~V--~~~~----~~~~---------~~~~~~l~~~~~ 144 (213)
++.||-+.+= --+..+.+++||.+|+.. ...+|.++ -+ .++. +.++ .+.++-+.-+++
T Consensus 52 ~rllvIvGPC---SIhd~~~aleyA~rLk~l~~~~~d~l~ivmR~y~eKPRTs~gwkGl~~DP~ldgs~~i~~GL~i~R~ 128 (356)
T PRK12822 52 PRLLVIIGPC---SIHDPQAALEYAKRLAVLQHQYLDQLYIVMRTYFEKPRTRKGWKGLIFDPDLDGSNDIEKGLRLARQ 128 (356)
T ss_pred CCeEEEEcCC---cCCCHHHHHHHHHHHHHHHHhhcccEEEEEEeccccCCCCCCccccccCCCCCCCccHHHHHHHHHH
Confidence 5666666641 134466888898887654 44456555 33 2221 1111 122333333333
Q ss_pred ---HHHhCCCCceeEEEEEcccCCchHHHHHHHHHHcCCcEE---EEcccCCCCCCchHHHHHhcCCCcEEE
Q 028129 145 ---HLSEGGFQEFRLLERLGEGSSKPTAIIGDVADELNLDLV---IISMEAIHSKHVDANLLAEFIPCPVLL 210 (213)
Q Consensus 145 ---~l~~~g~~~~~v~~~v~~G~~~p~~~Il~~A~e~~aDLI---VmG~~g~~~~Gs~~~~vl~~a~cPVLv 210 (213)
...+.|+. +...+.+-. ..+|. +||| -+|+|.- ..-....++...+|||.+
T Consensus 129 ll~~~~~~GlP---vatE~ld~~------~~qy~----~Dlisw~aIGARt~--esq~hrelaSgls~PVgf 185 (356)
T PRK12822 129 LLLSINTLGLA---TATEFLDTT------SFPYI----ADLICWGAIGARTT--ESQVHRQLASALPCPVGF 185 (356)
T ss_pred HHHHHHHhCCC---EEEeecccc------cHHHH----HHHHHhhhhccchh--cCHHHHHHHhCCCCceEe
Confidence 35667887 665553322 12444 4555 7787753 222344458889999875
No 317
>PRK13558 bacterio-opsin activator; Provisional
Probab=25.53 E-value=4.7e+02 Score=24.99 Aligned_cols=19 Identities=21% Similarity=0.246 Sum_probs=11.1
Q ss_pred HHHHHHHHcCCcEEEEccc
Q 028129 170 IIGDVADELNLDLVIISME 188 (213)
Q Consensus 170 ~Il~~A~e~~aDLIVmG~~ 188 (213)
..++..+...+|+||+...
T Consensus 42 ~al~~~~~~~~Dlvl~d~~ 60 (665)
T PRK13558 42 AARDRVEAGEIDCVVADHE 60 (665)
T ss_pred HHHHHhhccCCCEEEEecc
Confidence 3344445556777777664
No 318
>TIGR03787 marine_sort_RR proteobacterial dedicated sortase system response regulator. This model describes a family of DNA-binding response regulator proteins, associated with an adjacent histidine kinase (TIGR03785) to form a two-component system. This system co-occurs with, and often is adjacent to, a proteobacterial variant form of the protein sorting transpeptidase called sortase (TIGR03784), and a single target protein for the sortase. We give this protein the gene symbol pdsR, for Proteobacterial Dedicated Sortase system Response regulator.
Probab=25.52 E-value=3.3e+02 Score=21.31 Aligned_cols=43 Identities=14% Similarity=0.008 Sum_probs=25.0
Q ss_pred HHHHHHHHHcCCcEEEEcccCCC--CCCchHHHHHhc--CCCcEEEE
Q 028129 169 AIIGDVADELNLDLVIISMEAIH--SKHVDANLLAEF--IPCPVLLL 211 (213)
Q Consensus 169 ~~Il~~A~e~~aDLIVmG~~g~~--~~Gs~~~~vl~~--a~cPVLvV 211 (213)
++.++...+.++|+|++...-.. ..|......++. ..+|++++
T Consensus 34 ~~~~~~~~~~~~dlvild~~l~~~~~~g~~~~~~i~~~~~~~pii~l 80 (227)
T TIGR03787 34 PSAMQAFRQRLPDLAIIDIGLGEEIDGGFMLCQDLRSLSATLPIIFL 80 (227)
T ss_pred HHHHHHHHhCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCCCCEEEE
Confidence 44555667778999999765321 124433333433 35788775
No 319
>COG1553 DsrE Uncharacterized conserved protein involved in intracellular sulfur reduction [Inorganic ion transport and metabolism]
Probab=25.50 E-value=3.2e+02 Score=21.08 Aligned_cols=29 Identities=21% Similarity=0.180 Sum_probs=23.7
Q ss_pred CCCCCHHHHHHHHHHHHHHhhcCCEEEEE
Q 028129 94 NPYLSEGTRQAAATTAALAKKYGADITVV 122 (213)
Q Consensus 94 ~~~~S~~s~~Al~~A~~LA~~~~a~L~ll 122 (213)
.||+++.+..|+++|..+-++.+-.+.++
T Consensus 10 ppYg~q~a~~A~~fA~all~~gh~~v~iF 38 (126)
T COG1553 10 PPYGTESAFSALRFAEALLEQGHELVRLF 38 (126)
T ss_pred CCCccHHHHHHHHHHHHHHHcCCeEEEEE
Confidence 47999999999999999887755556666
No 320
>PF09967 DUF2201: VWA-like domain (DUF2201); InterPro: IPR018698 This family of various hypothetical bacterial proteins has no known function.
Probab=25.29 E-value=2e+02 Score=21.64 Aligned_cols=42 Identities=17% Similarity=0.374 Sum_probs=26.2
Q ss_pred EEEEeeCCCCCCCHHHHHHHHHHHHHHhhcCCEEEEEEEeCC
Q 028129 86 LLLPITDQNPYLSEGTRQAAATTAALAKKYGADITVVVIDER 127 (213)
Q Consensus 86 ILV~vD~~~~~~S~~s~~Al~~A~~LA~~~~a~L~ll~V~~~ 127 (213)
|+|++|.+-+-..+.-.+.+.....+.+..+.+++++..+..
T Consensus 1 i~vaiDtSGSis~~~l~~fl~ev~~i~~~~~~~v~vi~~D~~ 42 (126)
T PF09967_consen 1 IVVAIDTSGSISDEELRRFLSEVAGILRRFPAEVHVIQFDAE 42 (126)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHHHhCCCCEEEEEECCE
Confidence 467888531111123345566666688888889999877653
No 321
>cd06322 PBP1_ABC_sugar_binding_like_12 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=25.21 E-value=3.7e+02 Score=21.73 Aligned_cols=20 Identities=5% Similarity=0.120 Sum_probs=13.7
Q ss_pred HHHHHHHHHcCCcEEEEccc
Q 028129 169 AIIGDVADELNLDLVIISME 188 (213)
Q Consensus 169 ~~Il~~A~e~~aDLIVmG~~ 188 (213)
...++.+++.++-+|.++..
T Consensus 70 ~~~~~~~~~~~ipvV~~~~~ 89 (267)
T cd06322 70 RAAIAKAKKAGIPVITVDIA 89 (267)
T ss_pred HHHHHHHHHCCCCEEEEccc
Confidence 44556677777888888754
No 322
>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=25.15 E-value=2.9e+02 Score=24.06 Aligned_cols=54 Identities=17% Similarity=0.076 Sum_probs=34.7
Q ss_pred EEEEEcccCCchHHHHHHHHHHcCCcEEEEcccCCCC-CCchH-----HHHHhcCCCcEEE
Q 028129 156 LLERLGEGSSKPTAIIGDVADELNLDLVIISMEAIHS-KHVDA-----NLLAEFIPCPVLL 210 (213)
Q Consensus 156 v~~~v~~G~~~p~~~Il~~A~e~~aDLIVmG~~g~~~-~Gs~~-----~~vl~~a~cPVLv 210 (213)
+-..-.... .-..++++.|++.+..+|+.-+.+... .|... ..+++++.+||.+
T Consensus 15 V~AfN~~n~-e~~~avi~AAe~~~sPvIi~~~~~~~~~~~~~~~~~~~~~~a~~~~VPV~l 74 (276)
T cd00947 15 VGAFNINNL-ETLKAILEAAEETRSPVILQISEGAIKYAGLELLVAMVKAAAERASVPVAL 74 (276)
T ss_pred EEEEeeCCH-HHHHHHHHHHHHhCCCEEEEcCcchhhhCCHHHHHHHHHHHHHHCCCCEEE
Confidence 444333333 478899999999999999987765311 23221 1237788889865
No 323
>PRK13059 putative lipid kinase; Reviewed
Probab=25.12 E-value=4.4e+02 Score=22.61 Aligned_cols=8 Identities=38% Similarity=0.771 Sum_probs=4.3
Q ss_pred CCcEEEEc
Q 028129 205 PCPVLLLP 212 (213)
Q Consensus 205 ~cPVLvVp 212 (213)
++|+-++|
T Consensus 82 ~~~lgviP 89 (295)
T PRK13059 82 DLPIGILP 89 (295)
T ss_pred CCcEEEEC
Confidence 45555555
No 324
>cd06324 PBP1_ABC_sugar_binding_like_13 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=25.11 E-value=4.2e+02 Score=22.33 Aligned_cols=21 Identities=10% Similarity=0.202 Sum_probs=12.4
Q ss_pred HHHHHHHHHHcCCcEEEEccc
Q 028129 168 TAIIGDVADELNLDLVIISME 188 (213)
Q Consensus 168 ~~~Il~~A~e~~aDLIVmG~~ 188 (213)
.+.+++.+.+.++=+|+++..
T Consensus 71 ~~~~~~~~~~~giPvV~~~~~ 91 (305)
T cd06324 71 APELLRLAEGAGVKLFLVNSG 91 (305)
T ss_pred hHHHHHHHHhCCCeEEEEecC
Confidence 344556666666666666643
No 325
>cd01540 PBP1_arabinose_binding Periplasmic L-arabinose-binding protein (ABP), a member of a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Periplasmic L-arabinose-binding protein (ABP), a member of a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. ABP is only involved in transport contrary to other related sugar-binding proteins such as the glucose/galactose-binding protein (GGBP) and the ribose-binding protein (RBP), both of which are involved in chemotaxis as well as transport. The periplasmic ABP consists of two alpha/beta globular domains connected by a three-stranded hinge, a Venus flytrap-like domain, which undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, ABP is homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR) and DNA-binding transcriptional repressors such a
Probab=25.00 E-value=3.6e+02 Score=22.18 Aligned_cols=21 Identities=19% Similarity=0.200 Sum_probs=15.0
Q ss_pred HHHHHHHHHHcCCcEEEEccc
Q 028129 168 TAIIGDVADELNLDLVIISME 188 (213)
Q Consensus 168 ~~~Il~~A~e~~aDLIVmG~~ 188 (213)
...+++.+.+.++=+|+++..
T Consensus 68 ~~~~~~~~~~~~iPvV~~~~~ 88 (289)
T cd01540 68 GPAIVAKAKAYNMKVVAVDDR 88 (289)
T ss_pred hHHHHHHHHhCCCeEEEecCC
Confidence 456677777778888887653
No 326
>cd08171 GlyDH-like2 Glycerol dehydrogenase-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=24.99 E-value=4.8e+02 Score=22.99 Aligned_cols=8 Identities=13% Similarity=0.044 Sum_probs=3.8
Q ss_pred CcEEEEee
Q 028129 84 KHLLLPIT 91 (213)
Q Consensus 84 k~ILV~vD 91 (213)
+++|+-+|
T Consensus 23 ~r~liv~d 30 (345)
T cd08171 23 KKVVVIGG 30 (345)
T ss_pred CEEEEEeC
Confidence 44444444
No 327
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=24.98 E-value=4.5e+02 Score=22.64 Aligned_cols=104 Identities=16% Similarity=0.217 Sum_probs=54.8
Q ss_pred CCHHHHHHHHHHHHHHhhc-CCEEEEEEEeCCCCCChhhHHHHHHHHHHHHHhCCCCceeEEEEEcccCCchHHHHHHHH
Q 028129 97 LSEGTRQAAATTAALAKKY-GADITVVVIDERQKESLPEHENRLSSIRWHLSEGGFQEFRLLERLGEGSSKPTAIIGDVA 175 (213)
Q Consensus 97 ~S~~s~~Al~~A~~LA~~~-~a~L~ll~V~~~~~~~~~~~~~~l~~~~~~l~~~g~~~~~v~~~v~~G~~~p~~~Il~~A 175 (213)
|-...++|++.| +||++. +.+..=|-|......-++|..+.++.. +.+-++||. |.... . +.-.+.+..
T Consensus 71 Gc~tA~EAv~~A-~laRe~~~t~wIKLEVi~D~~~L~PD~~etl~Aa-e~Lv~eGF~---VlPY~--~---~D~v~akrL 140 (247)
T PF05690_consen 71 GCRTAEEAVRTA-RLAREAFGTNWIKLEVIGDDKTLLPDPIETLKAA-EILVKEGFV---VLPYC--T---DDPVLAKRL 140 (247)
T ss_dssp T-SSHHHHHHHH-HHHHHTTS-SEEEE--BS-TTT--B-HHHHHHHH-HHHHHTT-E---EEEEE------S-HHHHHHH
T ss_pred CCCCHHHHHHHH-HHHHHHcCCCeEEEEEeCCCCCcCCChhHHHHHH-HHHHHCCCE---EeecC--C---CCHHHHHHH
Confidence 777788898887 677664 555555544333333345555545443 456677998 76555 2 345677888
Q ss_pred HHcCCcEEEE-cccCCCCCCchH----HHHHhcCCCcEEE
Q 028129 176 DELNLDLVII-SMEAIHSKHVDA----NLLAEFIPCPVLL 210 (213)
Q Consensus 176 ~e~~aDLIVm-G~~g~~~~Gs~~----~~vl~~a~cPVLv 210 (213)
++.++..|.- |+.=-+..|+.. ..++.++++||++
T Consensus 141 ~d~GcaavMPlgsPIGSg~Gi~n~~~l~~i~~~~~vPvIv 180 (247)
T PF05690_consen 141 EDAGCAAVMPLGSPIGSGRGIQNPYNLRIIIERADVPVIV 180 (247)
T ss_dssp HHTT-SEBEEBSSSTTT---SSTHHHHHHHHHHGSSSBEE
T ss_pred HHCCCCEEEecccccccCcCCCCHHHHHHHHHhcCCcEEE
Confidence 8888876543 443111124432 2236788999876
No 328
>PRK11916 electron transfer flavoprotein subunit YdiR; Provisional
Probab=24.97 E-value=4.9e+02 Score=23.08 Aligned_cols=84 Identities=11% Similarity=0.156 Sum_probs=45.6
Q ss_pred CCcEEEEeeCCCCCCCHHHHHHHHHHHHHHhhcCCEEEEEEEeCCCCCChhhHHHHHHHHHHHHHhCCCCceeEEE---E
Q 028129 83 FKHLLLPITDQNPYLSEGTRQAAATTAALAKKYGADITVVVIDERQKESLPEHENRLSSIRWHLSEGGFQEFRLLE---R 159 (213)
Q Consensus 83 ~k~ILV~vD~~~~~~S~~s~~Al~~A~~LA~~~~a~L~ll~V~~~~~~~~~~~~~~l~~~~~~l~~~g~~~~~v~~---~ 159 (213)
++.|+|-.+. .+...+++-. |+..+.++.++.+.+. . ...+...|.+..-+.. .
T Consensus 4 ~~~i~V~~e~-----~~~~~Ell~~----A~~l~~~v~~vv~g~~------~--------~~~l~~~Gad~V~~~~~~~~ 60 (312)
T PRK11916 4 LNSVWVFSDN-----PERYAELFGG----AQQWGQQVYAIVQNTD------Q--------AQAVMPYGPKCIYVLEQNDA 60 (312)
T ss_pred CceEEEEEec-----CCcHHHHHHH----HHHcCCcEEEEEEChh------H--------HHHHHhcCCCEEEEeCCccc
Confidence 5568888883 3334445543 5555666666554420 0 1122334654211100 0
Q ss_pred EcccCCchHHHHHHHHHHcCCcEEEEcccCC
Q 028129 160 LGEGSSKPTAIIGDVADELNLDLVIISMEAI 190 (213)
Q Consensus 160 v~~G~~~p~~~Il~~A~e~~aDLIVmG~~g~ 190 (213)
....+ .-.+.|.+.++++++++|++++...
T Consensus 61 ~~~~e-~~~~al~~~i~~~~P~~vL~~~T~~ 90 (312)
T PRK11916 61 LQRTE-NYAESIAALLKDKHPAMLLLAATKR 90 (312)
T ss_pred ccChH-HHHHHHHHHHHhcCCCEEEECCCcc
Confidence 11122 3456788888999999999999654
No 329
>cd06278 PBP1_LacI_like_2 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=24.81 E-value=3.7e+02 Score=21.57 Aligned_cols=75 Identities=7% Similarity=0.010 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHhhcCCEEEEEEEeCCCCCChhhHHHHHHHHHHHHHhCCCCceeEEEEEcccCCchHHHHHHHHHHc
Q 028129 99 EGTRQAAATTAALAKKYGADITVVVIDERQKESLPEHENRLSSIRWHLSEGGFQEFRLLERLGEGSSKPTAIIGDVADEL 178 (213)
Q Consensus 99 ~~s~~Al~~A~~LA~~~~a~L~ll~V~~~~~~~~~~~~~~l~~~~~~l~~~g~~~~~v~~~v~~G~~~p~~~Il~~A~e~ 178 (213)
+.-...++...+.+++.|-.+.++..... .+.. +..+.+...++. ..... +. ++...+++.+.+.
T Consensus 12 ~~~~~~~~~i~~~~~~~g~~~~~~~~~~~-----~~~~----~~i~~~~~~~vd---giii~--~~-~~~~~~~~~~~~~ 76 (266)
T cd06278 12 PFYSELLEALSRALQARGYQPLLINTDDD-----EDLD----AALRQLLQYRVD---GVIVT--SG-TLSSELAEECRRN 76 (266)
T ss_pred chHHHHHHHHHHHHHHCCCeEEEEcCCCC-----HHHH----HHHHHHHHcCCC---EEEEe--cC-CCCHHHHHHHhhc
Confidence 34445555556677778876654432211 1111 222233444555 22221 21 2334557777788
Q ss_pred CCcEEEEccc
Q 028129 179 NLDLVIISME 188 (213)
Q Consensus 179 ~aDLIVmG~~ 188 (213)
++-+|.++..
T Consensus 77 ~ipvV~~~~~ 86 (266)
T cd06278 77 GIPVVLINRY 86 (266)
T ss_pred CCCEEEECCc
Confidence 8889999864
No 330
>COG1927 Mtd Coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase [Energy production and conversion]
Probab=24.80 E-value=2.4e+02 Score=23.94 Aligned_cols=43 Identities=19% Similarity=0.244 Sum_probs=31.9
Q ss_pred HHHHHHHHHcCCcEEEEcccCCCCCC-chHHHHHhcCCCcEEEE
Q 028129 169 AIIGDVADELNLDLVIISMEAIHSKH-VDANLLAEFIPCPVLLL 211 (213)
Q Consensus 169 ~~Il~~A~e~~aDLIVmG~~g~~~~G-s~~~~vl~~a~cPVLvV 211 (213)
.+.-+..++.+.|.||+++......| ..+..++..+..|.+++
T Consensus 50 aav~~~~e~~~pDfvi~isPNpaaPGP~kARE~l~~s~~Paiii 93 (277)
T COG1927 50 AAVTEMLEEFNPDFVIYISPNPAAPGPKKAREILSDSDVPAIII 93 (277)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCCchHHHHHHhhcCCCEEEe
Confidence 45567889999999999986542234 45556788899998886
No 331
>cd02173 ECT CTP:phosphoethanolamine cytidylyltransferase (ECT). CTP:phosphoethanolamine cytidylyltransferase (ECT) catalyzes the conversion of phosphoethanolamine to CDP-ethanolamine as part of the CDP-ethanolamine biosynthesis pathway. ECT expression in hepatocytes is localized predominantly to areas of the cytoplasm that are rich in rough endoplasmic reticulum. Several ECTs, including yeast and human ECT, have large repetitive sequences located within their N- and C-termini.
Probab=24.60 E-value=2.6e+02 Score=21.87 Aligned_cols=23 Identities=17% Similarity=0.439 Sum_probs=19.2
Q ss_pred hHHHHHHHHHHcCCcEEEEcccC
Q 028129 167 PTAIIGDVADELNLDLVIISMEA 189 (213)
Q Consensus 167 p~~~Il~~A~e~~aDLIVmG~~g 189 (213)
+.....++++++++|.+|.|.+.
T Consensus 76 ~~~~~~~~~~~~~~d~vv~G~d~ 98 (152)
T cd02173 76 PYVITKELIEHFKIDVVVHGKTE 98 (152)
T ss_pred CCcchHHHHHHhCCCEEEECCCC
Confidence 55567789999999999999764
No 332
>PHA02031 putative DnaG-like primase
Probab=24.33 E-value=1.8e+02 Score=25.35 Aligned_cols=38 Identities=8% Similarity=0.058 Sum_probs=30.0
Q ss_pred CcEEEEeeCCCCCCCHHHHHHHHHHHHHHhhcCCEEEEEEEeC
Q 028129 84 KHLLLPITDQNPYLSEGTRQAAATTAALAKKYGADITVVVIDE 126 (213)
Q Consensus 84 k~ILV~vD~~~~~~S~~s~~Al~~A~~LA~~~~a~L~ll~V~~ 126 (213)
++|++++| +.....+|...++.+....+.++.++.+.+
T Consensus 207 ~~Vil~fD-----gD~AG~~Aa~ra~~~l~~~~~~v~vv~lP~ 244 (266)
T PHA02031 207 PRVLIFLD-----GDPAGVDGSAGAMRRLRPLLIEGQVIITPD 244 (266)
T ss_pred CCEEEEeC-----CCHHHHHHHHHHHHHHHHcCCceEEEECCC
Confidence 78999999 788888888888888877776666655543
No 333
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=24.28 E-value=4.7e+02 Score=22.65 Aligned_cols=45 Identities=9% Similarity=0.114 Sum_probs=29.1
Q ss_pred hHHHHHHHHHHcCCcEEEEcccCCCCC---CchHHH--HHhcCCCcEEEE
Q 028129 167 PTAIIGDVADELNLDLVIISMEAIHSK---HVDANL--LAEFIPCPVLLL 211 (213)
Q Consensus 167 p~~~Il~~A~e~~aDLIVmG~~g~~~~---Gs~~~~--vl~~a~cPVLvV 211 (213)
-.-+..+.|++.++|-|++........ +....+ ++..++.||++.
T Consensus 89 ~~i~~~~~a~~~Gadav~~~pP~y~~~~~~~i~~~f~~va~~~~lpi~lY 138 (303)
T PRK03620 89 QAIEYAQAAERAGADGILLLPPYLTEAPQEGLAAHVEAVCKSTDLGVIVY 138 (303)
T ss_pred HHHHHHHHHHHhCCCEEEECCCCCCCCCHHHHHHHHHHHHHhCCCCEEEE
Confidence 344556889999999999877543111 222222 377789999875
No 334
>COG0482 TrmU Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Translation, ribosomal structure and biogenesis]
Probab=24.28 E-value=5.4e+02 Score=23.37 Aligned_cols=24 Identities=25% Similarity=0.148 Sum_probs=20.2
Q ss_pred hHHHHHHHHHHcCCcEEEEcccCC
Q 028129 167 PTAIIGDVADELNLDLVIISMEAI 190 (213)
Q Consensus 167 p~~~Il~~A~e~~aDLIVmG~~g~ 190 (213)
-...++++|.++++|.|+.|+.-+
T Consensus 104 KF~~~l~~a~~lgad~iATGHYar 127 (356)
T COG0482 104 KFKALLDYAKELGADYIATGHYAR 127 (356)
T ss_pred HHHHHHHHHHHcCCCeEEEeeeEe
Confidence 346888999999999999999543
No 335
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=24.27 E-value=3.8e+02 Score=21.54 Aligned_cols=16 Identities=6% Similarity=0.003 Sum_probs=6.7
Q ss_pred HHHHHHHcCCcEEEEc
Q 028129 171 IGDVADELNLDLVIIS 186 (213)
Q Consensus 171 Il~~A~e~~aDLIVmG 186 (213)
|++.+++.++|+|++|
T Consensus 92 i~~~I~~s~~dil~Vg 107 (177)
T TIGR00696 92 ALAKIARSGAGIVFVG 107 (177)
T ss_pred HHHHHHHcCCCEEEEE
Confidence 3444444444444443
No 336
>cd08175 G1PDH Glycerol-1-phosphate dehydrogenase (G1PDH) catalyzes the reversible reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in an NADH-dependent manner. Glycerol-1-phosphate dehydrogenase (G1PDH) plays a role in the synthesis of phosphoglycerolipids in Gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires a Ni++ ion. In Bacillus subtilis, it has been described as AraM gene in L-arabinose (ara) operon. AraM protein forms homodimer. This family is bacteria specific.
Probab=24.22 E-value=5e+02 Score=22.87 Aligned_cols=8 Identities=25% Similarity=0.285 Sum_probs=4.2
Q ss_pred CcEEEEee
Q 028129 84 KHLLLPIT 91 (213)
Q Consensus 84 k~ILV~vD 91 (213)
+++||-+|
T Consensus 24 ~~~livtd 31 (348)
T cd08175 24 KKALIVAD 31 (348)
T ss_pred CcEEEEEC
Confidence 45555555
No 337
>COG0069 GltB Glutamate synthase domain 2 [Amino acid transport and metabolism]
Probab=24.14 E-value=3.9e+02 Score=25.41 Aligned_cols=49 Identities=10% Similarity=0.034 Sum_probs=30.8
Q ss_pred EEEEEcccCCchHHHHHHHHHHcCCcEEEEcc-cCCCCCCchHHHHHhcCCCcE
Q 028129 156 LLERLGEGSSKPTAIIGDVADELNLDLVIISM-EAIHSKHVDANLLAEFIPCPV 208 (213)
Q Consensus 156 v~~~v~~G~~~p~~~Il~~A~e~~aDLIVmG~-~g~~~~Gs~~~~vl~~a~cPV 208 (213)
+...+..+. ....|.--+-+-++|+|++-- .|- +|-.....++++.+|.
T Consensus 306 I~VKlva~~--~v~~iaagvakA~AD~I~IdG~~GG--TGAsP~~~~~~~GiP~ 355 (485)
T COG0069 306 ISVKLVAEH--GVGTIAAGVAKAGADVITIDGADGG--TGASPLTSIDHAGIPW 355 (485)
T ss_pred EEEEEeccc--chHHHHhhhhhccCCEEEEcCCCCc--CCCCcHhHhhcCCchH
Confidence 444555554 566666656677999999944 443 5655555566666663
No 338
>PRK03670 competence damage-inducible protein A; Provisional
Probab=24.13 E-value=4.3e+02 Score=22.59 Aligned_cols=64 Identities=20% Similarity=0.129 Sum_probs=34.7
Q ss_pred HHHHHHHHHhCCCCceeEEEEEcccCCchHHHHHHHHHH---cCCcEEEEc-ccCCCCCCchHHHHHhcCCCc
Q 028129 139 LSSIRWHLSEGGFQEFRLLERLGEGSSKPTAIIGDVADE---LNLDLVIIS-MEAIHSKHVDANLLAEFIPCP 207 (213)
Q Consensus 139 l~~~~~~l~~~g~~~~~v~~~v~~G~~~p~~~Il~~A~e---~~aDLIVmG-~~g~~~~Gs~~~~vl~~a~cP 207 (213)
...+...+.+.|++ +......++ -.+.|.+..++ ..+|+||+. .-|......+..-+++-...|
T Consensus 22 ~~~la~~L~~~G~~---v~~~~iV~D--d~~~I~~~l~~a~~~~~DlVIttGGlGpt~dD~T~eava~a~g~~ 89 (252)
T PRK03670 22 SAFIAQKLTEKGYW---VRRITTVGD--DVEEIKSVVLEILSRKPEVLVISGGLGPTHDDVTMLAVAEALGRE 89 (252)
T ss_pred HHHHHHHHHHCCCE---EEEEEEcCC--CHHHHHHHHHHHhhCCCCEEEECCCccCCCCCchHHHHHHHhCCC
Confidence 33455567788888 665555565 44556665443 257998884 223222344554444333333
No 339
>KOG2862 consensus Alanine-glyoxylate aminotransferase AGT1 [General function prediction only]
Probab=24.13 E-value=4.8e+02 Score=23.70 Aligned_cols=63 Identities=19% Similarity=0.143 Sum_probs=35.5
Q ss_pred chhhhhhhhcccCCCCCcccchhhhh--------hcCCCcEEEEeeCCCCCCCHHHHHHHHHHHHHHhhcCCEEEEEEEe
Q 028129 54 FPRFRRIGHKAKVKSPESEINSVAEA--------FTNFKHLLLPITDQNPYLSEGTRQAAATTAALAKKYGADITVVVID 125 (213)
Q Consensus 54 ~~~~~r~~~~a~~~~~~~~~~~~~~~--------~~~~k~ILV~vD~~~~~~S~~s~~Al~~A~~LA~~~~a~L~ll~V~ 125 (213)
..-+|.+|+-+...+...+. ..... ..+-++||+... | --+. .++++++++|++++.+..+
T Consensus 56 ~egikyVFkT~n~~tf~isg-sGh~g~E~al~N~lePgd~vLv~~~-----G-~wg~----ra~D~~~r~ga~V~~v~~~ 124 (385)
T KOG2862|consen 56 LEGIKYVFKTANAQTFVISG-SGHSGWEAALVNLLEPGDNVLVVST-----G-TWGQ----RAADCARRYGAEVDVVEAD 124 (385)
T ss_pred HHHHHHHhccCCCceEEEec-CCcchHHHHHHhhcCCCCeEEEEEe-----c-hHHH----HHHHHHHhhCceeeEEecC
Confidence 34456666666554443332 11111 124467777777 3 2333 3557789999999998554
Q ss_pred CC
Q 028129 126 ER 127 (213)
Q Consensus 126 ~~ 127 (213)
..
T Consensus 125 ~G 126 (385)
T KOG2862|consen 125 IG 126 (385)
T ss_pred cc
Confidence 43
No 340
>TIGR03702 lip_kinase_YegS lipid kinase YegS. Members of this protein family are designated YegS, an apparent lipid kinase family in the Proteobacteria. Bakali, et al. report phosphatidylglycerol kinase activity for the member from Escherichia coli, but refrain from calling that activity synonymous with its biological role. Note that a broader, subfamily-type model (TIGR00147), includes this family but also multiple paralogs in some species and varied functions.
Probab=24.12 E-value=4.6e+02 Score=22.43 Aligned_cols=65 Identities=20% Similarity=0.127 Sum_probs=30.8
Q ss_pred HHHHHHHhCCCCceeEEEEEcccCCchHHHHHHHHHHcCCcEEEEcccCCCCCCchHHHH---Hh---cCCCcEEEEcC
Q 028129 141 SIRWHLSEGGFQEFRLLERLGEGSSKPTAIIGDVADELNLDLVIISMEAIHSKHVDANLL---AE---FIPCPVLLLPL 213 (213)
Q Consensus 141 ~~~~~l~~~g~~~~~v~~~v~~G~~~p~~~Il~~A~e~~aDLIVmG~~g~~~~Gs~~~~v---l~---~a~cPVLvVp~ 213 (213)
++...+.+.|++ |.+......| -+.++.+.+.+.+.|.||... | .|.....+ .. ..++|+-++|.
T Consensus 18 ~~~~~l~~~g~~-~~v~~t~~~~---~a~~~a~~~~~~~~d~vv~~G-G---DGTi~ev~ngl~~~~~~~~~~lgiiP~ 88 (293)
T TIGR03702 18 EAVGDLRDEGIQ-LHVRVTWEKG---DAQRYVAEALALGVSTVIAGG-G---DGTLREVATALAQIRDDAAPALGLLPL 88 (293)
T ss_pred HHHHHHHHCCCe-EEEEEecCCC---CHHHHHHHHHHcCCCEEEEEc-C---ChHHHHHHHHHHhhCCCCCCcEEEEcC
Confidence 344456666665 2222112233 345666555556677666422 2 24433332 22 13457777763
No 341
>PRK03673 hypothetical protein; Provisional
Probab=23.83 E-value=4.4e+02 Score=24.23 Aligned_cols=65 Identities=15% Similarity=0.078 Sum_probs=39.8
Q ss_pred HHHHHHHHhCCCCceeEEEEEcccCCchHHHHHHHHHHc--CCcEEEE-cccCCCCCCchHHHHHhcCCCcEE
Q 028129 140 SSIRWHLSEGGFQEFRLLERLGEGSSKPTAIIGDVADEL--NLDLVII-SMEAIHSKHVDANLLAEFIPCPVL 209 (213)
Q Consensus 140 ~~~~~~l~~~g~~~~~v~~~v~~G~~~p~~~Il~~A~e~--~aDLIVm-G~~g~~~~Gs~~~~vl~~a~cPVL 209 (213)
..+...+.+.|++ +......|| -.+.|.+..++. ++|+||+ |.-|......+..-+++...+|+.
T Consensus 24 ~~la~~L~~~G~~---v~~~~~v~D--~~~~i~~~l~~a~~~~DlVI~tGGlGpt~dD~t~~avA~a~g~~L~ 91 (396)
T PRK03673 24 AWLADFFFHQGLP---LSRRNTVGD--NLDALVAILRERSQHADVLIVNGGLGPTSDDLSALAAATAAGEGLV 91 (396)
T ss_pred HHHHHHHHHCCCE---EEEEEEcCC--CHHHHHHHHHHHhccCCEEEEcCCCCCCCcccHHHHHHHHcCCCce
Confidence 3445567788988 766666676 455566654432 6898887 444443345666666666666654
No 342
>TIGR02069 cyanophycinase cyanophycinase. This model describes both cytosolic and extracellular cyanophycinases. The former are part of a system in many Cyanobacteria and a few other species of generating and later utilizing a storage polymer for nitrogen, carbon, and energy, called cyanophycin. The latter are found in species such as Pseudomonas anguilliseptica that can use external cyanophycin. The polymer has a backbone of L-aspartic acid, with most Asp side chain carboxyl groups attached to L-arginine.
Probab=23.69 E-value=4.5e+02 Score=22.30 Aligned_cols=76 Identities=13% Similarity=-0.030 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHhhcCCEEEEEE-EeCCCCCChhhHHHHHHHHHHHHHhCCCCceeEEEEEccc-CCchHHHHHHHHHHc
Q 028129 101 TRQAAATTAALAKKYGADITVVV-IDERQKESLPEHENRLSSIRWHLSEGGFQEFRLLERLGEG-SSKPTAIIGDVADEL 178 (213)
Q Consensus 101 s~~Al~~A~~LA~~~~a~L~ll~-V~~~~~~~~~~~~~~l~~~~~~l~~~g~~~~~v~~~v~~G-~~~p~~~Il~~A~e~ 178 (213)
....+++.++++...++++.++- ... +.+...+...+.+...|++. +....... ++...+++++..+
T Consensus 13 ~~~i~~~~~~lag~~~~rI~~iptAS~-------~~~~~~~~~~~~~~~lG~~~--v~~l~i~~r~~a~~~~~~~~l~-- 81 (250)
T TIGR02069 13 DREILREFVSRAGGEDAIIVIITSASE-------EPREVGERYITIFSRLGVKE--VKILDVREREDASDENAIALLS-- 81 (250)
T ss_pred hHHHHHHHHHHhCCCCceEEEEeCCCC-------ChHHHHHHHHHHHHHcCCce--eEEEecCChHHccCHHHHHHHh--
Confidence 34477777888877677776652 211 11223344555566667753 22211111 0001134455554
Q ss_pred CCcEEEEcc
Q 028129 179 NLDLVIISM 187 (213)
Q Consensus 179 ~aDLIVmG~ 187 (213)
++|.|+++.
T Consensus 82 ~ad~I~~~G 90 (250)
T TIGR02069 82 NATGIFFTG 90 (250)
T ss_pred hCCEEEEeC
Confidence 488888865
No 343
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=23.66 E-value=2.4e+02 Score=20.27 Aligned_cols=22 Identities=5% Similarity=-0.016 Sum_probs=10.8
Q ss_pred hHHHHHHHHHHcCCcEEEEcccC
Q 028129 167 PTAIIGDVADELNLDLVIISMEA 189 (213)
Q Consensus 167 p~~~Il~~A~e~~aDLIVmG~~g 189 (213)
..+..++.++. +--++++|..+
T Consensus 71 ~~~~~~~~l~~-~G~~v~vg~~~ 92 (130)
T PF00107_consen 71 TLQEAIKLLRP-GGRIVVVGVYG 92 (130)
T ss_dssp HHHHHHHHEEE-EEEEEEESSTS
T ss_pred HHHHHHHHhcc-CCEEEEEEccC
Confidence 33444444333 44566666655
No 344
>cd07388 MPP_Tt1561 Thermus thermophilus Tt1561 and related proteins, metallophosphatase domain. This family includes bacterial proteins related to Tt1561 (also known as Aq1956 in Aquifex aeolicus), an uncharacterized Thermus thermophilus protein. The conserved domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets,
Probab=23.65 E-value=2.3e+02 Score=23.75 Aligned_cols=8 Identities=0% Similarity=0.036 Sum_probs=3.5
Q ss_pred EEEEcccC
Q 028129 182 LVIISMEA 189 (213)
Q Consensus 182 LIVmG~~g 189 (213)
+.|.|.+.
T Consensus 66 ~~V~GNhD 73 (224)
T cd07388 66 FYVPGPQD 73 (224)
T ss_pred EEEcCCCC
Confidence 34445443
No 345
>PRK03692 putative UDP-N-acetyl-D-mannosaminuronic acid transferase; Provisional
Probab=23.63 E-value=3.8e+02 Score=22.77 Aligned_cols=22 Identities=9% Similarity=0.134 Sum_probs=17.4
Q ss_pred HHHHHHHHHHcCCcEEEEcccC
Q 028129 168 TAIIGDVADELNLDLVIISMEA 189 (213)
Q Consensus 168 ~~~Il~~A~e~~aDLIVmG~~g 189 (213)
.++|++.+.+.++|+|++|.-.
T Consensus 146 ~~~i~~~I~~s~~dil~VglG~ 167 (243)
T PRK03692 146 RQALFERIHASGAKIVTVAMGS 167 (243)
T ss_pred HHHHHHHHHhcCCCEEEEECCC
Confidence 4568888888899999988753
No 346
>TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2. Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids.
Probab=23.47 E-value=5.2e+02 Score=22.85 Aligned_cols=83 Identities=12% Similarity=0.084 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHhhcCCEEEEEEEeCC-CCCChhhHHHHHHHHHHHHHhCCCCceeEEEEEcccCCchHHHHHHHHHHcCC
Q 028129 102 RQAAATTAALAKKYGADITVVVIDER-QKESLPEHENRLSSIRWHLSEGGFQEFRLLERLGEGSSKPTAIIGDVADELNL 180 (213)
Q Consensus 102 ~~Al~~A~~LA~~~~a~L~ll~V~~~-~~~~~~~~~~~l~~~~~~l~~~g~~~~~v~~~v~~G~~~p~~~Il~~A~e~~a 180 (213)
...+..++++.......+++-...+. .+....+.+..++.+++....-++. +..... |. ....++.+..++.++
T Consensus 130 ~~~~~~~i~~i~adal~i~ln~~q~~~~p~g~~~f~~~le~i~~i~~~~~vP---VivK~~-g~-g~~~~~a~~L~~aGv 204 (333)
T TIGR02151 130 PEEAQEAIDMIEADALAIHLNVLQELVQPEGDRNFKGWLEKIAEICSQLSVP---VIVKEV-GF-GISKEVAKLLADAGV 204 (333)
T ss_pred HHHHHHHHHHhcCCCEEEcCcccccccCCCCCcCHHHHHHHHHHHHHhcCCC---EEEEec-CC-CCCHHHHHHHHHcCC
Confidence 34455555655443334544211111 1111122333445555444444566 654432 32 244677788888999
Q ss_pred cEEEEcccC
Q 028129 181 DLVIISMEA 189 (213)
Q Consensus 181 DLIVmG~~g 189 (213)
|.|+++.+|
T Consensus 205 d~I~Vsg~g 213 (333)
T TIGR02151 205 SAIDVAGAG 213 (333)
T ss_pred CEEEECCCC
Confidence 999998765
No 347
>PF01116 F_bP_aldolase: Fructose-bisphosphate aldolase class-II; InterPro: IPR000771 Fructose-bisphosphate aldolase [, ] is a glycolytic enzyme that catalyses the reversible aldol cleavage or condensation of fructose-1,6-bisphosphate into dihydroxyacetone-phosphate and glyceraldehyde 3-phosphate. There are two classes of fructose-bisphosphate aldolases with different catalytic mechanisms. Class-II aldolases [], mainly found in prokaryotes and fungi, are homodimeric enzymes, which require a divalent metal ion, generally zinc, for their activity. This family also includes the Escherichia coli galactitol operon protein, gatY, which catalyses the transformation of tagatose 1,6-bisphosphate into glycerone phosphate and D-glyceraldehyde 3-phosphate; and E. coli N-acetyl galactosamine operon protein, agaY, which catalyses the same reaction. There are two histidine residues in the first half of the sequence of these enzymes that have been shown to be involved in binding a zinc ion [].; GO: 0008270 zinc ion binding, 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3Q94_A 1RVG_B 1RV8_C 3C4U_A 3C56_B 3C52_A 2FJK_A 3N9R_P 3N9S_A 1GVF_B ....
Probab=23.46 E-value=1.3e+02 Score=26.27 Aligned_cols=62 Identities=19% Similarity=0.187 Sum_probs=37.7
Q ss_pred HHHhCCCCceeEEEEEcccCCchHHHHHHHHHHcCCcEEEEcccCCCC-CCchH-----HHHHhcCCCcEEE
Q 028129 145 HLSEGGFQEFRLLERLGEGSSKPTAIIGDVADELNLDLVIISMEAIHS-KHVDA-----NLLAEFIPCPVLL 210 (213)
Q Consensus 145 ~l~~~g~~~~~v~~~v~~G~~~p~~~Il~~A~e~~aDLIVmG~~g~~~-~Gs~~-----~~vl~~a~cPVLv 210 (213)
...+.++. +-..-..+- .-..++++.|++.+..+|+.-+.+... .|... ..+++++.+||.+
T Consensus 11 ~A~~~~yA---V~AfN~~n~-e~~~avi~AAe~~~sPvIlq~~~~~~~~~~~~~~~~~~~~~a~~~~vPVal 78 (287)
T PF01116_consen 11 KAKEGGYA---VPAFNVYNL-ETARAVIEAAEELNSPVILQISPSEVKYMGLEYLAAMVKAAAEEASVPVAL 78 (287)
T ss_dssp HHHHHT-B---EEEEE-SSH-HHHHHHHHHHHHTTS-EEEEEEHHHHHHHHHHHHHHHHHHHHHHSTSEEEE
T ss_pred HHHHCCCe---EEEEeeCCH-HHHHHHHHHHHHhCCCEEEEcchhhhhhhhHHHHHHHHHHHHHHcCCCEEe
Confidence 33444544 544444343 578999999999999999998865300 12111 1238889999965
No 348
>cd06319 PBP1_ABC_sugar_binding_like_10 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=23.45 E-value=4e+02 Score=21.58 Aligned_cols=20 Identities=15% Similarity=0.273 Sum_probs=13.4
Q ss_pred HHHHHHHHHcCCcEEEEccc
Q 028129 169 AIIGDVADELNLDLVIISME 188 (213)
Q Consensus 169 ~~Il~~A~e~~aDLIVmG~~ 188 (213)
..+++.+++.++=+|+++..
T Consensus 70 ~~~l~~~~~~~ipvV~~~~~ 89 (277)
T cd06319 70 VTLLKLAAQAKIPVVIADIG 89 (277)
T ss_pred HHHHHHHHHCCCCEEEEecC
Confidence 45667777777777777653
No 349
>COG5012 Predicted cobalamin binding protein [General function prediction only]
Probab=23.43 E-value=1.8e+02 Score=24.75 Aligned_cols=38 Identities=34% Similarity=0.490 Sum_probs=29.3
Q ss_pred HHHHhCCCCceeEEEEEcccCCchHHHHHHHHHHcCCcEEEEcc
Q 028129 144 WHLSEGGFQEFRLLERLGEGSSKPTAIIGDVADELNLDLVIISM 187 (213)
Q Consensus 144 ~~l~~~g~~~~~v~~~v~~G~~~p~~~Il~~A~e~~aDLIVmG~ 187 (213)
..+...||+ +. -+... -|.+..++.|+++++|+|-|.+
T Consensus 126 ~ml~~aGfe---vi-dLG~d--vP~e~fve~a~e~k~d~v~~Sa 163 (227)
T COG5012 126 TMLEAAGFE---VI-DLGRD--VPVEEFVEKAKELKPDLVSMSA 163 (227)
T ss_pred HHHHhCCcE---EE-ecCCC--CCHHHHHHHHHHcCCcEEechH
Confidence 456677888 54 33223 4999999999999999999876
No 350
>COG0301 ThiI Thiamine biosynthesis ATP pyrophosphatase [Coenzyme metabolism]
Probab=23.22 E-value=5.9e+02 Score=23.39 Aligned_cols=23 Identities=22% Similarity=0.190 Sum_probs=17.9
Q ss_pred HHHHHHhhcCCEEEEEEEeCCCC
Q 028129 107 TTAALAKKYGADITVVVIDERQK 129 (213)
Q Consensus 107 ~A~~LA~~~~a~L~ll~V~~~~~ 129 (213)
.|.+++.+-|.+++.+|...++.
T Consensus 190 VA~~l~mkRG~~v~~v~f~~~p~ 212 (383)
T COG0301 190 VAAWLMMKRGVEVIPVHFGNPPY 212 (383)
T ss_pred HHHHHHHhcCCEEEEEEEcCCCC
Confidence 46678888899999998866543
No 351
>TIGR00147 lipid kinase, YegS/Rv2252/BmrU family. The E. coli member of this family, YegS has been purified and shown to have phosphatidylglycerol kinase activity. The member from M. tuberculosis, Rv2252, has diacylglycerol kinase activity. BmrU from B. subtilis is in an operon with multidrug efflux transporter Bmr, but is uncharacterized.
Probab=23.20 E-value=4.7e+02 Score=22.20 Aligned_cols=17 Identities=18% Similarity=0.261 Sum_probs=6.5
Q ss_pred HHHHHHHHHhhcCCEEE
Q 028129 104 AAATTAALAKKYGADIT 120 (213)
Q Consensus 104 Al~~A~~LA~~~~a~L~ 120 (213)
.++.......+.+.++.
T Consensus 20 ~~~~i~~~l~~~~~~~~ 36 (293)
T TIGR00147 20 PLREVIMLLREEGMEIH 36 (293)
T ss_pred HHHHHHHHHHHCCCEEE
Confidence 33333333333444433
No 352
>COG0191 Fba Fructose/tagatose bisphosphate aldolase [Carbohydrate transport and metabolism]
Probab=22.97 E-value=3.5e+02 Score=23.86 Aligned_cols=63 Identities=22% Similarity=0.139 Sum_probs=41.0
Q ss_pred HHHHhCCCCceeEEEEEcccCCchHHHHHHHHHHcCCcEEEEcccCCCC--CCchHH-----HHHhcCCCcEEE
Q 028129 144 WHLSEGGFQEFRLLERLGEGSSKPTAIIGDVADELNLDLVIISMEAIHS--KHVDAN-----LLAEFIPCPVLL 210 (213)
Q Consensus 144 ~~l~~~g~~~~~v~~~v~~G~~~p~~~Il~~A~e~~aDLIVmG~~g~~~--~Gs~~~-----~vl~~a~cPVLv 210 (213)
+..++.++. +-..-..+- .-.++|++.|++.+..+||=.+.|... +|.... .++.+.++||.+
T Consensus 11 ~~Ake~~yA---vpAfN~~nl-E~~~AileaA~e~~sPvIiq~S~g~~~y~gg~~~~~~~v~~~a~~~~vPV~l 80 (286)
T COG0191 11 DKAKENGYA---VPAFNINNL-ETLQAILEAAEEEKSPVIIQFSEGAAKYAGGADSLAHMVKALAEKYGVPVAL 80 (286)
T ss_pred HHHHHcCCc---eeeeeecCH-HHHHHHHHHHHHhCCCEEEEecccHHHHhchHHHHHHHHHHHHHHCCCCEEE
Confidence 344555555 443334444 578999999999999999998876411 122211 137888899875
No 353
>PRK10841 hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional
Probab=22.79 E-value=5.2e+02 Score=26.37 Aligned_cols=62 Identities=13% Similarity=0.112 Sum_probs=35.9
Q ss_pred HHHHHHHhCCCCceeEEEEEcccCCchHHHHHHHHHHcCCcEEEEcccCCCCCCchHHHHHhc--CCCcEEEE
Q 028129 141 SIRWHLSEGGFQEFRLLERLGEGSSKPTAIIGDVADELNLDLVIISMEAIHSKHVDANLLAEF--IPCPVLLL 211 (213)
Q Consensus 141 ~~~~~l~~~g~~~~~v~~~v~~G~~~p~~~Il~~A~e~~aDLIVmG~~g~~~~Gs~~~~vl~~--a~cPVLvV 211 (213)
.+...+...|+. +.. ... .. +-++..++..+|+|+|...-....|......+++ ..+||+++
T Consensus 816 ~l~~~L~~~G~~---v~~-a~~----g~-eal~~l~~~~~DlVl~D~~mP~mdG~el~~~ir~~~~~~pII~l 879 (924)
T PRK10841 816 LLADQLGSLGYQ---CKT-AND----GV-DALNVLSKNHIDIVLTDVNMPNMDGYRLTQRLRQLGLTLPVIGV 879 (924)
T ss_pred HHHHHHHHcCCE---EEE-ECC----HH-HHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHHhcCCCCCEEEE
Confidence 344556666765 542 322 33 4445566778999999775432246655544443 45788765
No 354
>PLN02501 digalactosyldiacylglycerol synthase
Probab=22.74 E-value=8.1e+02 Score=24.82 Aligned_cols=126 Identities=17% Similarity=0.157 Sum_probs=76.2
Q ss_pred cCCCcEEEEeeCCCCCCCHHHHHHHHHHHHHHhhcCCEEEEEEEeCC--C----CC---ChhhHHHHHHHHHHHH-HhCC
Q 028129 81 TNFKHLLLPITDQNPYLSEGTRQAAATTAALAKKYGADITVVVIDER--Q----KE---SLPEHENRLSSIRWHL-SEGG 150 (213)
Q Consensus 81 ~~~k~ILV~vD~~~~~~S~~s~~Al~~A~~LA~~~~a~L~ll~V~~~--~----~~---~~~~~~~~l~~~~~~l-~~~g 150 (213)
..-++|.|-+..+-|-.+..+-.-|-.|+.||+..+.++++|.-+-. . +. .+...+++..-++.++ ...|
T Consensus 320 ~~~r~~~ivTtAslPWmTGtavnpL~rAayLa~~~~~~VtlviPWl~~~dq~~vy~~~~~F~~p~eQe~~ir~wl~~r~g 399 (794)
T PLN02501 320 DGKRHVAIVTTASLPWMTGTAVNPLFRAAYLAKSAKQNVTLLVPWLCKSDQELVYPNNLTFSSPEEQESYIRNWLEERIG 399 (794)
T ss_pred cCCCeEEEEEcccCcccccccccHHHHHHHhcccCCceEEEEEecCCccccccccCCCcccCCHHHHHHHHHHHHHHhcC
Confidence 33478888887555666667778888899999987888988843221 1 11 1122233344444444 4556
Q ss_pred CCc-eeEEEE-----EcccCCchHHHHHHHHHHcCCcEEEEcccCCCCCCch--HHHHHhcCCCcEE
Q 028129 151 FQE-FRLLER-----LGEGSSKPTAIIGDVADELNLDLVIISMEAIHSKHVD--ANLLAEFIPCPVL 209 (213)
Q Consensus 151 ~~~-~~v~~~-----v~~G~~~p~~~Il~~A~e~~aDLIVmG~~g~~~~Gs~--~~~vl~~a~cPVL 209 (213)
+.. +.+... ...|.--|...|.+...+.++|+|.+.+... -|.- ....+++-. ||+
T Consensus 400 ~~~~~~i~fYpg~~~~~~~SI~p~gdI~~~L~~f~PDVVHLatP~~--LGw~~~Glr~ArKl~-PVV 463 (794)
T PLN02501 400 FKADFKISFYPGKFSKERRSIIPAGDTSQFIPSKDADIAILEEPEH--LNWYHHGKRWTDKFN-HVV 463 (794)
T ss_pred CCCCceEEeecchhccCCccccchHHHHHHhhccCCCEEEECCchh--hccHHHHHHHHHHcC-CeE
Confidence 652 111110 0011113778899999999999999998765 5666 555666666 654
No 355
>cd07015 Clp_protease_NfeD Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially cle
Probab=22.57 E-value=2.3e+02 Score=22.80 Aligned_cols=18 Identities=11% Similarity=0.163 Sum_probs=8.7
Q ss_pred HHHHHHHHHHcCCcEEEE
Q 028129 168 TAIIGDVADELNLDLVII 185 (213)
Q Consensus 168 ~~~Il~~A~e~~aDLIVm 185 (213)
...|.+..+..+...++.
T Consensus 47 ~~~I~~~i~~~~~pvv~~ 64 (172)
T cd07015 47 AGNIVQRIQQSKIPVIIY 64 (172)
T ss_pred HHHHHHHHHhcCcCEEEE
Confidence 345555555444544443
No 356
>cd06295 PBP1_CelR Ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. This group includes the ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. The binding of CelR to the celE promoter is inhibited specifically by cellobiose. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn chang
Probab=22.54 E-value=4.3e+02 Score=21.51 Aligned_cols=20 Identities=15% Similarity=0.142 Sum_probs=14.6
Q ss_pred HHHHHHHHHcCCcEEEEccc
Q 028129 169 AIIGDVADELNLDLVIISME 188 (213)
Q Consensus 169 ~~Il~~A~e~~aDLIVmG~~ 188 (213)
...++.+.+.++=+|+++..
T Consensus 77 ~~~~~~~~~~~ipvV~~~~~ 96 (275)
T cd06295 77 DPLPERLAETGLPFVVWGRP 96 (275)
T ss_pred hHHHHHHHhCCCCEEEECCc
Confidence 34567777778888888874
No 357
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=22.46 E-value=4.8e+02 Score=22.05 Aligned_cols=38 Identities=26% Similarity=0.249 Sum_probs=20.6
Q ss_pred CCCcEEEEeeCCCCCCCH-HHHHHHHHHHHHHhhcCCEEEEEEEeC
Q 028129 82 NFKHLLLPITDQNPYLSE-GTRQAAATTAALAKKYGADITVVVIDE 126 (213)
Q Consensus 82 ~~k~ILV~vD~~~~~~S~-~s~~Al~~A~~LA~~~~a~L~ll~V~~ 126 (213)
.=|.|+..... ++. .+.-+|..| |++.|+++.++.-++
T Consensus 41 nAkliVe~~s~----g~~~~ttiaLaaA---Ar~TgGR~vCIvp~~ 79 (218)
T PF07279_consen 41 NAKLIVEAWSS----GGAISTTIALAAA---ARQTGGRHVCIVPDE 79 (218)
T ss_pred cceEEEEEecC----CCchHhHHHHHHH---HHhcCCeEEEEcCCh
Confidence 34567766662 322 223344333 567788887765443
No 358
>PRK10766 DNA-binding transcriptional regulator TorR; Provisional
Probab=22.39 E-value=3.8e+02 Score=20.86 Aligned_cols=18 Identities=11% Similarity=0.577 Sum_probs=9.4
Q ss_pred HHHHHHHcCCcEEEEccc
Q 028129 171 IGDVADELNLDLVIISME 188 (213)
Q Consensus 171 Il~~A~e~~aDLIVmG~~ 188 (213)
.++.+.+..+|+|++...
T Consensus 38 ~~~~~~~~~~dlvild~~ 55 (221)
T PRK10766 38 MREIMQNQHVDLILLDIN 55 (221)
T ss_pred HHHHHhcCCCCEEEEeCC
Confidence 334444455666666543
No 359
>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]
Probab=22.38 E-value=4.4e+02 Score=24.16 Aligned_cols=89 Identities=16% Similarity=0.220 Sum_probs=47.7
Q ss_pred CCCcEEEEeeCCCCCCCHHHHHHHHHHHHHHhhcCCEEEEEEEeCCCCCChhhHHHHHHHHHHHHH-hCCCCceeE-EEE
Q 028129 82 NFKHLLLPITDQNPYLSEGTRQAAATTAALAKKYGADITVVVIDERQKESLPEHENRLSSIRWHLS-EGGFQEFRL-LER 159 (213)
Q Consensus 82 ~~k~ILV~vD~~~~~~S~~s~~Al~~A~~LA~~~~a~L~ll~V~~~~~~~~~~~~~~l~~~~~~l~-~~g~~~~~v-~~~ 159 (213)
+-.++|+... | ....+ -.++++.+|++++++.......... +.+.+.+. ..+++..-+ ...
T Consensus 79 pgdkVLv~~n-----G-~FG~R----~~~ia~~~g~~v~~~~~~wg~~v~p-------~~v~~~L~~~~~~~~V~~vH~E 141 (383)
T COG0075 79 PGDKVLVVVN-----G-KFGER----FAEIAERYGAEVVVLEVEWGEAVDP-------EEVEEALDKDPDIKAVAVVHNE 141 (383)
T ss_pred CCCeEEEEeC-----C-hHHHH----HHHHHHHhCCceEEEeCCCCCCCCH-------HHHHHHHhcCCCccEEEEEecc
Confidence 3458888888 3 33333 2367788999999887664333332 23333333 223431111 111
Q ss_pred EcccCCchHHHHHHHHHHcCCcEEEEcc
Q 028129 160 LGEGSSKPTAIIGDVADELNLDLVIISM 187 (213)
Q Consensus 160 v~~G~~~p~~~Il~~A~e~~aDLIVmG~ 187 (213)
.-.|--.|.++|.+.++++++=+||=+-
T Consensus 142 TSTGvlnpl~~I~~~~k~~g~l~iVDaV 169 (383)
T COG0075 142 TSTGVLNPLKEIAKAAKEHGALLIVDAV 169 (383)
T ss_pred CcccccCcHHHHHHHHHHcCCEEEEEec
Confidence 1122225888999999888655555333
No 360
>PLN03194 putative disease resistance protein; Provisional
Probab=22.28 E-value=2.3e+02 Score=23.38 Aligned_cols=53 Identities=15% Similarity=0.106 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHhCCCCceeEEEEEcccCCchHHHHHHHHHHcCCcEEEEcccCC
Q 028129 137 NRLSSIRWHLSEGGFQEFRLLERLGEGSSKPTAIIGDVADELNLDLVIISMEAI 190 (213)
Q Consensus 137 ~~l~~~~~~l~~~g~~~~~v~~~v~~G~~~p~~~Il~~A~e~~aDLIVmG~~g~ 190 (213)
.....+.+.+...|+..|--...+..|+ .....|.+.+++-.+-++|+...-.
T Consensus 41 ~FvshL~~aL~~~GI~vF~D~~el~~G~-~i~~~L~~AIeeSri~IvVfS~~Ya 93 (187)
T PLN03194 41 TIATLLYDHLSRLNLRPFLDNKNMKPGD-KLFDKINSAIRNCKVGVAVFSPRYC 93 (187)
T ss_pred cHHHHHHHHHHHCCCEEEEcCccccCCC-cHHHHHHHHHHhCeEEEEEECCCcc
Confidence 4566777888888988443222455687 7888999999999999999987543
No 361
>PRK10124 putative UDP-glucose lipid carrier transferase; Provisional
Probab=22.14 E-value=1.7e+02 Score=27.27 Aligned_cols=43 Identities=23% Similarity=0.274 Sum_probs=24.9
Q ss_pred HHHHHHHHHHcCCcEEEEcccCCCCCCchHHHH---HhcCCCcEEEEc
Q 028129 168 TAIIGDVADELNLDLVIISMEAIHSKHVDANLL---AEFIPCPVLLLP 212 (213)
Q Consensus 168 ~~~Il~~A~e~~aDLIVmG~~g~~~~Gs~~~~v---l~~a~cPVLvVp 212 (213)
.+.|.++++++++|-|++..... .+.....+ +...+|.|.++|
T Consensus 192 ~~dL~~~v~~~~IdeViIAip~~--~~~~l~ell~~~~~~~v~V~ivP 237 (463)
T PRK10124 192 LQQLVEDAKAGKIHNVYIAMSMC--DGARVKKLVRQLADTTCSVLLIP 237 (463)
T ss_pred HHHHHHHHHhCCCCEEEEeCCCc--chHHHHHHHHHHHHcCCeEEEec
Confidence 35667777777777777766543 22222222 445567776665
No 362
>TIGR00646 MG010 DNA primase-related protein. The DNA primase DnaG of E. coli and its apparent orthologs in other eubacterial species are approximately 600 residues in length. Within this set, a conspicuous outlier in percent identity, as seen in a UPGMA difference tree, is the branch containing the Mycoplasmas. This lineage is also unique in containing the small, DNA primase-related protein modelled by this alignment, which is homologous to the central third of DNA primase. Several small regions of sequence similarity specifically to Mycoplasma sequences rather than to all DnaG homologs suggests that the divergence of this protein from DnaG post-dated the separation of bacterial lineages. The function of this DNA primase-related protein is unknown.
Probab=22.08 E-value=4.8e+02 Score=21.97 Aligned_cols=38 Identities=21% Similarity=0.230 Sum_probs=28.9
Q ss_pred CCcEEEEeeCCCCCCCHHHHHHHHHHHHHHhhcCCEEEEEEEe
Q 028129 83 FKHLLLPITDQNPYLSEGTRQAAATTAALAKKYGADITVVVID 125 (213)
Q Consensus 83 ~k~ILV~vD~~~~~~S~~s~~Al~~A~~LA~~~~a~L~ll~V~ 125 (213)
.++|++++| +.....+|...+..+....|-.+.++...
T Consensus 154 ~~~Iil~~D-----~D~AG~~Aa~r~~~~L~~~G~~v~vv~lP 191 (218)
T TIGR00646 154 IEKIFICFD-----NDFAGKNAAANLEEILKKAGFITKVIEIK 191 (218)
T ss_pred CCEEEEEeC-----CCHHHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 478999999 67788888888888887777666655443
No 363
>PRK09483 response regulator; Provisional
Probab=22.06 E-value=3.8e+02 Score=20.74 Aligned_cols=42 Identities=12% Similarity=0.055 Sum_probs=20.2
Q ss_pred HHHHHHHHcCCcEEEEcccCCCCCCchHHHHHh--cCCCcEEEE
Q 028129 170 IIGDVADELNLDLVIISMEAIHSKHVDANLLAE--FIPCPVLLL 211 (213)
Q Consensus 170 ~Il~~A~e~~aDLIVmG~~g~~~~Gs~~~~vl~--~a~cPVLvV 211 (213)
..++..++..+|+|++...-....|......++ ...+|++++
T Consensus 38 ~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~~~~~~~~ii~l 81 (217)
T PRK09483 38 DAVKWCRTNAVDVVLMDMNMPGIGGLEATRKILRYTPDVKIIML 81 (217)
T ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHCCCCeEEEE
Confidence 334455566778877766432123433322222 234566554
No 364
>PF01645 Glu_synthase: Conserved region in glutamate synthase; InterPro: IPR002932 Ferredoxin-dependent glutamate synthases have been implicated in a number of functions including photorespiration in Arabidopsis where they may also play a role in primary nitrogen assimilation in roots []. This region is expressed as a seperate subunit in the glutamate synthase alpha subunit from archaebacteria, or part of a large multidomain enzyme in other organisms. The aligned region of these proteins contains a putative FMN binding site and Fe-S cluster.; GO: 0015930 glutamate synthase activity, 0016638 oxidoreductase activity, acting on the CH-NH2 group of donors, 0006537 glutamate biosynthetic process, 0055114 oxidation-reduction process; PDB: 1EA0_A 2VDC_E 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A.
Probab=22.05 E-value=2.1e+02 Score=26.03 Aligned_cols=31 Identities=19% Similarity=0.134 Sum_probs=21.4
Q ss_pred EEEEEcccCCchHHHHHHHHHHcCCcEEEEccc
Q 028129 156 LLERLGEGSSKPTAIIGDVADELNLDLVIISME 188 (213)
Q Consensus 156 v~~~v~~G~~~p~~~Il~~A~e~~aDLIVmG~~ 188 (213)
|-..+..|. ..+.|...+.+.++|.|++-..
T Consensus 206 VgvKl~~~~--~~~~~~~~~~~ag~D~ItIDG~ 236 (368)
T PF01645_consen 206 VGVKLVAGR--GVEDIAAGAAKAGADFITIDGA 236 (368)
T ss_dssp EEEEEE-ST--THHHHHHHHHHTT-SEEEEE-T
T ss_pred EEEEECCCC--cHHHHHHhhhhccCCEEEEeCC
Confidence 655666675 7777887788899999999443
No 365
>PF02729 OTCace_N: Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain; InterPro: IPR006132 This entry contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and may also play a role in trimerization of the molecules []. The carboxyl-terminal, aspartate/ornithine-binding domain is is described by IPR006131 from INTERPRO. ; GO: 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 2P2G_D 2I6U_A 2YFK_B 3D6N_B 3SDS_A 3GD5_A 3R7L_B 3R7F_A 3R7D_A ....
Probab=22.05 E-value=1.4e+02 Score=23.19 Aligned_cols=36 Identities=22% Similarity=0.251 Sum_probs=20.2
Q ss_pred HHHHHHHHHcCCcEEEEcccCCCCCCchHHHHHhcCCCcEE
Q 028129 169 AIIGDVADELNLDLVIISMEAIHSKHVDANLLAEFIPCPVL 209 (213)
Q Consensus 169 ~~Il~~A~e~~aDLIVmG~~g~~~~Gs~~~~vl~~a~cPVL 209 (213)
....++...+ +|+||+-.... .....++..+.|||+
T Consensus 85 ~Dtar~ls~~-~D~iv~R~~~~----~~~~~~a~~~~vPVI 120 (142)
T PF02729_consen 85 EDTARVLSRY-VDAIVIRHPSH----GALEELAEHSSVPVI 120 (142)
T ss_dssp HHHHHHHHHH-CSEEEEEESSH----HHHHHHHHHCSSEEE
T ss_pred HHHHHHHHHh-hheEEEEeccc----hHHHHHHHhccCCeE
Confidence 3334444455 77777754432 234445777777774
No 366
>TIGR01862 N2-ase-Ialpha nitrogenase component I, alpha chain. This model represents the alpha chain of all three varieties (Mo-Fe, V-Fe, and Fe-Fe) of component I of nitrogenase.
Probab=22.00 E-value=6.3e+02 Score=23.27 Aligned_cols=82 Identities=12% Similarity=0.129 Sum_probs=44.2
Q ss_pred CCcEEEEeeCCCCCCCHHHHHHHHHHHHHHhhcCCEEEEEEEeCCCCCChhhHHHHHHHHHHHHHhCCCCceeEEEEEcc
Q 028129 83 FKHLLLPITDQNPYLSEGTRQAAATTAALAKKYGADITVVVIDERQKESLPEHENRLSSIRWHLSEGGFQEFRLLERLGE 162 (213)
Q Consensus 83 ~k~ILV~vD~~~~~~S~~s~~Al~~A~~LA~~~~a~L~ll~V~~~~~~~~~~~~~~l~~~~~~l~~~g~~~~~v~~~v~~ 162 (213)
-++++|..++ + .++.++..+....|.++..+...... .+.++. .+....-. ...+
T Consensus 317 gkrvai~~~~-----~----~~~~~~~~ll~elGm~v~~~~~~~~~-------~~~~~~---~l~~l~~~----~~~v-- 371 (443)
T TIGR01862 317 GKRVCLYIGG-----S----RLWHWIGSAEEDLGMEVVAVGYEFAH-------EDDYEK---TMKRMGEG----TLLI-- 371 (443)
T ss_pred CCeEEEECCc-----h----hHHHHHHHHHHHCCCEEEEecccccc-------HHHHHH---HHHhCCCc----eEEe--
Confidence 4678887772 2 44555555777888887666322110 111111 12211111 1122
Q ss_pred cCCchHHHHHHHHHHcCCcEEEEcccCC
Q 028129 163 GSSKPTAIIGDVADELNLDLVIISMEAI 190 (213)
Q Consensus 163 G~~~p~~~Il~~A~e~~aDLIVmG~~g~ 190 (213)
++ .-..++.+.+++.++||||=+++++
T Consensus 372 ~~-~~~~e~~~~i~~~~pdllig~s~~~ 398 (443)
T TIGR01862 372 DD-PNELEFEEILEKLKPDIIFSGIKEK 398 (443)
T ss_pred cC-CCHHHHHHHHHhcCCCEEEEcCcch
Confidence 22 2346777888999999988777665
No 367
>PRK06247 pyruvate kinase; Provisional
Probab=21.99 E-value=2.1e+02 Score=27.08 Aligned_cols=41 Identities=24% Similarity=0.248 Sum_probs=31.4
Q ss_pred hHHHHHHHHHHcCCcEEEEcccCCCCCCchHHHHHh-cCCCcEEEE
Q 028129 167 PTAIIGDVADELNLDLVIISMEAIHSKHVDANLLAE-FIPCPVLLL 211 (213)
Q Consensus 167 p~~~Il~~A~e~~aDLIVmG~~g~~~~Gs~~~~vl~-~a~cPVLvV 211 (213)
.+...++.|++.++.+||+-++ +|.++..+.+ +.+|||+.+
T Consensus 357 ia~sa~~~A~~l~a~~Iv~~T~----sG~ta~~isk~RP~~pI~a~ 398 (476)
T PRK06247 357 ISYAARDIAERLDLAALVAYTS----SGDTALRAARERPPLPILAL 398 (476)
T ss_pred HHHHHHHHHHhCCCCEEEEEcC----CcHHHHHHHhhCCCCCEEEE
Confidence 4456667888899999999765 5778887754 577999876
No 368
>TIGR01826 CofD_related conserved hypothetical protein, cofD-related. This model represents a subfamily of conserved hypothetical proteins that forms a sister group to the family of CofD, (TIGR01819), LPPG:Fo 2-phospho-L-lactate transferase, an enzyme of cytochrome F420 biosynthesis. Both this family and TIGR01819 are within the scope of the pfam model pfam01933.
Probab=21.95 E-value=82 Score=27.99 Aligned_cols=44 Identities=18% Similarity=0.194 Sum_probs=29.0
Q ss_pred chHHHHHHHHHHcCCcEEEEcccCCCCCCchHHHH-------HhcCCCcEEEEc
Q 028129 166 KPTAIIGDVADELNLDLVIISMEAIHSKHVDANLL-------AEFIPCPVLLLP 212 (213)
Q Consensus 166 ~p~~~Il~~A~e~~aDLIVmG~~g~~~~Gs~~~~v-------l~~a~cPVLvVp 212 (213)
.+..+.++..++ +|+||+|--....+ +-..++ +++++||++.|.
T Consensus 161 ~a~~~al~AI~~--ADlIvlgPGSlyTS-IiPnLlv~gI~eAI~~s~a~kV~v~ 211 (310)
T TIGR01826 161 PALREAVEAIRE--ADLIILGPGSLYTS-IIPNLLVPEIAEALRESKAPKVYVC 211 (310)
T ss_pred CCCHHHHHHHHh--CCEEEECCCcCHHH-hchhcCchhHHHHHHhCCCCEEEEe
Confidence 466788888876 99999998653111 111111 788899988763
No 369
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=21.95 E-value=4.5e+02 Score=21.71 Aligned_cols=99 Identities=20% Similarity=0.183 Sum_probs=47.9
Q ss_pred HHHHHHHhhcCCE-EEEE-EEeCCCCCChhhHHHHHHHHHHHHHhCCCCceeEEEE-EcccCCc--------hHHHHHHH
Q 028129 106 ATTAALAKKYGAD-ITVV-VIDERQKESLPEHENRLSSIRWHLSEGGFQEFRLLER-LGEGSSK--------PTAIIGDV 174 (213)
Q Consensus 106 ~~A~~LA~~~~a~-L~ll-~V~~~~~~~~~~~~~~l~~~~~~l~~~g~~~~~v~~~-v~~G~~~--------p~~~Il~~ 174 (213)
...+..|.+.|+. +.++ ++............+.+..+.+.....|+. +..+ ...+. . ......+.
T Consensus 79 ~~~ve~A~~~GAd~vd~vi~~~~~~~~~~~~~~~~i~~v~~~~~~~gl~---vIlE~~l~~~-~~~~~~~~~~I~~a~ri 154 (236)
T PF01791_consen 79 VAEVEEAIRLGADEVDVVINYGALGSGNEDEVIEEIAAVVEECHKYGLK---VILEPYLRGE-EVADEKKPDLIARAARI 154 (236)
T ss_dssp HHHHHHHHHTT-SEEEEEEEHHHHHTTHHHHHHHHHHHHHHHHHTSEEE---EEEEECECHH-HBSSTTHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCceeeeeccccccccccHHHHHHHHHHHHHHHhcCCcE---EEEEEecCch-hhcccccHHHHHHHHHH
Confidence 3445556666664 5554 331111111122233344444555555665 3332 22222 1 12455677
Q ss_pred HHHcCCcEEEEcccCCCCCCchHH------HHHhcCCCc----EEE
Q 028129 175 ADELNLDLVIISMEAIHSKHVDAN------LLAEFIPCP----VLL 210 (213)
Q Consensus 175 A~e~~aDLIVmG~~g~~~~Gs~~~------~vl~~a~cP----VLv 210 (213)
+.+.++|.|=..+.+. .|.+.. .++..++|| |.+
T Consensus 155 a~e~GaD~vKt~tg~~--~~~t~~~~~~~~~~~~~~~~p~~~~Vk~ 198 (236)
T PF01791_consen 155 AAELGADFVKTSTGKP--VGATPEDVELMRKAVEAAPVPGKVGVKA 198 (236)
T ss_dssp HHHTT-SEEEEE-SSS--SCSHHHHHHHHHHHHHTHSSTTTSEEEE
T ss_pred HHHhCCCEEEecCCcc--ccccHHHHHHHHHHHHhcCCCcceEEEE
Confidence 8889999998877643 333321 237788899 765
No 370
>cd08173 Gro1PDH Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH) catalyzes the reversible conversion between dihydroxyacetone phosphate and glycerol-1-phosphate using either NADH or NADPH as a coenzyme. Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH, EC 1.1.1.261) plays an important role in the formation of the enantiomeric configuration of the glycerophosphate backbone (sn-glycerol-1-phosphate) of archaeal ether lipids. It catalyzes the reversible conversion between dihydroxyacetone phosphate and glycerol-1-phosphate using either NADH or NADPH as a coenzyme. The activity is zinc-dependent. One characteristic feature of archaea is that their cellular membrane has an ether linkage between the glycerol backbone and the hydrocarbon residues. The polar lipids of the members of Archaea consist of di- and tetraethers of glycerol with isoprenoid alcohols bound at the sn-2 and sn-3 positions of the glycerol moiety. The archaeal polar lipids have the enantiomeric configuration of a glycerophosph
Probab=21.89 E-value=5.5e+02 Score=22.53 Aligned_cols=9 Identities=0% Similarity=0.324 Sum_probs=4.8
Q ss_pred CCcEEEEcc
Q 028129 179 NLDLVIISM 187 (213)
Q Consensus 179 ~aDLIVmG~ 187 (213)
+..+|.+.+
T Consensus 102 ~~p~i~iPT 110 (339)
T cd08173 102 GIPFISVPT 110 (339)
T ss_pred CCCEEEecC
Confidence 455555554
No 371
>PRK11058 GTPase HflX; Provisional
Probab=21.84 E-value=4.6e+02 Score=24.17 Aligned_cols=21 Identities=10% Similarity=0.191 Sum_probs=16.7
Q ss_pred hHHHHHHHHHHcCCcEEEEcc
Q 028129 167 PTAIIGDVADELNLDLVIISM 187 (213)
Q Consensus 167 p~~~Il~~A~e~~aDLIVmG~ 187 (213)
-.++|-+.+++.++|+||+-.
T Consensus 62 k~~e~~~~~~~~~~~~vi~~~ 82 (426)
T PRK11058 62 KAVEIAEAVKATGASVVLFDH 82 (426)
T ss_pred HHHHHHHHHHhcCCCEEEECC
Confidence 567888888888888888864
No 372
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=21.72 E-value=3.7e+02 Score=23.54 Aligned_cols=62 Identities=16% Similarity=-0.017 Sum_probs=38.6
Q ss_pred HHHhCCCCceeEEEEEcccCCchHHHHHHHHHHcCCcEEEEcccCCC-CCCchHH-----HHHhcCCCcEEE
Q 028129 145 HLSEGGFQEFRLLERLGEGSSKPTAIIGDVADELNLDLVIISMEAIH-SKHVDAN-----LLAEFIPCPVLL 210 (213)
Q Consensus 145 ~l~~~g~~~~~v~~~v~~G~~~p~~~Il~~A~e~~aDLIVmG~~g~~-~~Gs~~~-----~vl~~a~cPVLv 210 (213)
...+.++- +-..-..+. .-..++++.|++.+..+|+..+.+.. ..|.... .+++++.+||.+
T Consensus 12 ~A~~~~ya---V~AfN~~n~-e~~~avi~AAe~~~sPvIl~~~~~~~~~~g~~~~~~~~~~~A~~~~vPV~l 79 (283)
T PRK07998 12 RIQEKHVL---AGAFNTTNL-ETTISILNAIERSGLPNFIQIAPTNAQLSGYDYIYEIVKRHADKMDVPVSL 79 (283)
T ss_pred HHHHCCCE---EEEEeeCCH-HHHHHHHHHHHHhCCCEEEECcHhHHhhCCHHHHHHHHHHHHHHCCCCEEE
Confidence 34444443 444333333 46789999999999999999876531 1233221 237888999865
No 373
>COG2025 FixB Electron transfer flavoprotein, alpha subunit [Energy production and conversion]
Probab=21.67 E-value=5.8e+02 Score=22.73 Aligned_cols=84 Identities=19% Similarity=0.201 Sum_probs=47.0
Q ss_pred cEEEEeeCCCCCCCHHHHHHHHHHHHHHhhcCCEEEEEEEeCCCCCChhhHHHHHHHHHHHHHhCCCCceeEEEEEcccC
Q 028129 85 HLLLPITDQNPYLSEGTRQAAATTAALAKKYGADITVVVIDERQKESLPEHENRLSSIRWHLSEGGFQEFRLLERLGEGS 164 (213)
Q Consensus 85 ~ILV~vD~~~~~~S~~s~~Al~~A~~LA~~~~a~L~ll~V~~~~~~~~~~~~~~l~~~~~~l~~~g~~~~~v~~~v~~G~ 164 (213)
++++-.|++....++.+.+++.- |++.+ +++++++.+ ...+.....|.+. ........
T Consensus 2 ~vlv~~e~~~~~l~~~s~el~~~----A~~l~-~v~~vv~g~--------------~~~~~~~~~Gad~---v~~~~~~~ 59 (313)
T COG2025 2 KVLVVAEHDGGRLSPVSLELLTA----ARKLG-DVAAVVIGE--------------GAAAAAKAYGADK---VLVAEGPE 59 (313)
T ss_pred eEEEEecCCCCccchhhHHHHHH----HHhcC-ceEEEEech--------------HHHHHHhhcCCCE---EEEEcccc
Confidence 45666664333345555566655 44444 666666654 1122344456552 11111111
Q ss_pred ------CchHHHHHHHHHHcCCcEEEEcccCC
Q 028129 165 ------SKPTAIIGDVADELNLDLVIISMEAI 190 (213)
Q Consensus 165 ------~~p~~~Il~~A~e~~aDLIVmG~~g~ 190 (213)
....+.|.+.+++++.|+|++|+...
T Consensus 60 ~~~~~~e~~~~~l~~l~~~~~p~~il~~aT~~ 91 (313)
T COG2025 60 LANYLPEPYADALVDLAKKYKPDVVLLPATTN 91 (313)
T ss_pred hhccchhHHHHHHHHHHHhcCCCEEEEcCCCc
Confidence 01567899999999999999998654
No 374
>COG0816 Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) [DNA replication, recombination, and repair]
Probab=21.53 E-value=2.8e+02 Score=21.65 Aligned_cols=45 Identities=18% Similarity=0.220 Sum_probs=30.6
Q ss_pred hHHHHHHHHHHcCCcEEEEcccCCCC--CCchHH-------HHHhcCCCcEEEE
Q 028129 167 PTAIIGDVADELNLDLVIISMEAIHS--KHVDAN-------LLAEFIPCPVLLL 211 (213)
Q Consensus 167 p~~~Il~~A~e~~aDLIVmG~~g~~~--~Gs~~~-------~vl~~a~cPVLvV 211 (213)
..+.|.+..++++++.||+|-.-... .|.... .+-++-++||.++
T Consensus 41 ~~~~l~~li~~~~~~~vVVGlP~~m~g~~~~~~~~~~~f~~~L~~r~~lpv~l~ 94 (141)
T COG0816 41 DFNALLKLVKEYQVDTVVVGLPLNMDGTEGPRAELARKFAERLKKRFNLPVVLW 94 (141)
T ss_pred hHHHHHHHHHHhCCCEEEEecCcCCCCCcchhHHHHHHHHHHHHHhcCCCEEEE
Confidence 57889999999999999999854211 233221 2355667888764
No 375
>cd06301 PBP1_rhizopine_binding_like Periplasmic binding proteins specific to rhizopines. Periplasmic binding proteins specific to rhizopines, which are simple sugar-like compounds produced in the nodules induced by the symbiotic root nodule bacteria, such as Rhizobium and Sinorhizobium. Rhizopine-binding-like proteins from other bacteria are also included. Two inositol based rhizopine compounds are known to date: L-3-O-methly-scyllo-inosamine (3-O-MSI) and scyllo-inosamine. Bacterial strains that can metabolize rhizopine have a greater competitive advantage in nodulation and rhizopine synthesis is regulated by NifA/NtrA regulatory transcription activators which are maximally expressed at the onset of nitrogen fixation in bacteroids. The members of this group belong to the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily.
Probab=21.51 E-value=4.4e+02 Score=21.31 Aligned_cols=21 Identities=29% Similarity=0.302 Sum_probs=14.1
Q ss_pred HHHHHHHHHHcCCcEEEEccc
Q 028129 168 TAIIGDVADELNLDLVIISME 188 (213)
Q Consensus 168 ~~~Il~~A~e~~aDLIVmG~~ 188 (213)
...+++.+.+.++-+|.++..
T Consensus 70 ~~~~~~~l~~~~iPvv~~~~~ 90 (272)
T cd06301 70 TAPIVKAANAAGIPLVYVNRR 90 (272)
T ss_pred hHHHHHHHHHCCCeEEEecCC
Confidence 355666677777777777764
No 376
>PLN02958 diacylglycerol kinase/D-erythro-sphingosine kinase
Probab=21.49 E-value=6.8e+02 Score=23.47 Aligned_cols=65 Identities=14% Similarity=0.118 Sum_probs=36.6
Q ss_pred HHHHHHHhCCCCceeEEEEEcccCCchHHHHHHHHHHcCCcEEEEcccCCCCCCchHHHH---Hhc------CCCcEEEE
Q 028129 141 SIRWHLSEGGFQEFRLLERLGEGSSKPTAIIGDVADELNLDLVIISMEAIHSKHVDANLL---AEF------IPCPVLLL 211 (213)
Q Consensus 141 ~~~~~l~~~g~~~~~v~~~v~~G~~~p~~~Il~~A~e~~aDLIVmG~~g~~~~Gs~~~~v---l~~------a~cPVLvV 211 (213)
.+...+++.+++ ++....+.. .-+.++++.+...++|.||+.. | .|.....+ +.+ ..+|+-++
T Consensus 134 ~v~~~L~~~gi~---~~v~~T~~~-ghA~~la~~~~~~~~D~VV~vG-G---DGTlnEVvNGL~~~~~~~~~~~~pLGiI 205 (481)
T PLN02958 134 VVKPLLEDADIQ---LTIQETKYQ-LHAKEVVRTMDLSKYDGIVCVS-G---DGILVEVVNGLLEREDWKTAIKLPIGMV 205 (481)
T ss_pred HHHHHHHHcCCe---EEEEeccCc-cHHHHHHHHhhhcCCCEEEEEc-C---CCHHHHHHHHHhhCccccccccCceEEe
Confidence 455567777877 443333222 2356677666667788777632 2 24444433 222 36888888
Q ss_pred cC
Q 028129 212 PL 213 (213)
Q Consensus 212 p~ 213 (213)
|.
T Consensus 206 Pa 207 (481)
T PLN02958 206 PA 207 (481)
T ss_pred cC
Confidence 73
No 377
>PRK13055 putative lipid kinase; Reviewed
Probab=21.47 E-value=5.6e+02 Score=22.48 Aligned_cols=18 Identities=28% Similarity=0.290 Sum_probs=8.9
Q ss_pred HHHHHHHHHHcCCcEEEE
Q 028129 168 TAIIGDVADELNLDLVII 185 (213)
Q Consensus 168 ~~~Il~~A~e~~aDLIVm 185 (213)
+..+.+.+.+.++|+||+
T Consensus 48 a~~~~~~~~~~~~d~vvv 65 (334)
T PRK13055 48 AKNEAKRAAEAGFDLIIA 65 (334)
T ss_pred HHHHHHHHhhcCCCEEEE
Confidence 344444444455665554
No 378
>COG1609 PurR Transcriptional regulators [Transcription]
Probab=21.18 E-value=5.6e+02 Score=22.39 Aligned_cols=19 Identities=11% Similarity=-0.101 Sum_probs=9.3
Q ss_pred HHHHHHHHHcCCcEEEEcc
Q 028129 169 AIIGDVADELNLDLVIISM 187 (213)
Q Consensus 169 ~~Il~~A~e~~aDLIVmG~ 187 (213)
+.+++...+.++|=||+-.
T Consensus 104 ~~~~~~l~~~~vdGiIi~~ 122 (333)
T COG1609 104 REYLETLLQKRVDGLILLG 122 (333)
T ss_pred HHHHHHHHHcCCCEEEEec
Confidence 3444445555555555543
No 379
>PRK09836 DNA-binding transcriptional activator CusR; Provisional
Probab=21.12 E-value=4.1e+02 Score=20.80 Aligned_cols=41 Identities=22% Similarity=0.161 Sum_probs=21.2
Q ss_pred HHHHHHHcCCcEEEEcccCCCCCCchHHHHHhc--CCCcEEEE
Q 028129 171 IGDVADELNLDLVIISMEAIHSKHVDANLLAEF--IPCPVLLL 211 (213)
Q Consensus 171 Il~~A~e~~aDLIVmG~~g~~~~Gs~~~~vl~~--a~cPVLvV 211 (213)
.++...+..+|+|++...-....|......++. ..+|++++
T Consensus 36 ~~~~~~~~~~dlvild~~~~~~~g~~~~~~lr~~~~~~pii~l 78 (227)
T PRK09836 36 GYHLAMTGDYDLIILDIMLPDVNGWDIVRMLRSANKGMPILLL 78 (227)
T ss_pred HHHHHhhCCCCEEEEECCCCCCCHHHHHHHHHhcCCCCCEEEE
Confidence 344455667888888664322234433333332 35677654
No 380
>cd02174 CCT CTP:phosphocholine cytidylyltransferase. CTP:phosphocholine cytidylyltransferase (CCT) catalyzes the condensation of CTP and phosphocholine to form CDP-choline as the rate-limiting and regulatory step in the CDP-choline pathway. CCT is unique in that its enzymatic activity is regulated by the extent of its association with membrane structures. A current model posts that the elastic stress of the bilayer curvature is sensed by CCT and this governs the degree of membrane association, thus providing a mechanism for both positive and negative regulation of activity.
Probab=21.05 E-value=1.7e+02 Score=22.94 Aligned_cols=22 Identities=18% Similarity=0.229 Sum_probs=17.4
Q ss_pred hHHHHHHHHHHcCCcEEEEccc
Q 028129 167 PTAIIGDVADELNLDLVIISME 188 (213)
Q Consensus 167 p~~~Il~~A~e~~aDLIVmG~~ 188 (213)
+.....++++++++|.||.|..
T Consensus 76 ~~~~~~~~i~~~~~d~vv~G~d 97 (150)
T cd02174 76 PYVTTPEFLDKYKCDYVAHGDD 97 (150)
T ss_pred CCCChHHHHHHhCCCEEEECCC
Confidence 5455567888999999999964
No 381
>TIGR02766 crypt_chrom_pln cryptochrome, plant family. At least five major families of cryptochomes and photolyases share FAD cofactor binding, sequence homology, and the ability to react to short wavelengths of visible light. Photolysases are responsible for light-dependent DNA repair by removal of two types of uv-induced DNA dimerizations. Cryptochromes have other functions, often regulatory and often largely unknown, which may include circadian clock entrainment and control of development. Members of this subfamily are known so far only in plants; they may show some photolyase activity in vitro but appear mostly to be regulatory proteins that respond to blue light.
Probab=20.95 E-value=6.7e+02 Score=23.19 Aligned_cols=78 Identities=15% Similarity=0.074 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHhhcCCEEEEEEEeCCCCC---Ch-h----hHHHHHHHHHHHHHhCCCCceeEEEEEcccCCchHHHH
Q 028129 100 GTRQAAATTAALAKKYGADITVVVIDERQKE---SL-P----EHENRLSSIRWHLSEGGFQEFRLLERLGEGSSKPTAII 171 (213)
Q Consensus 100 ~s~~Al~~A~~LA~~~~a~L~ll~V~~~~~~---~~-~----~~~~~l~~~~~~l~~~g~~~~~v~~~v~~G~~~p~~~I 171 (213)
....||..|+. .+ .+..|+|.++... .. . -..+.+..+.+.+.+.|.. .... ..|+ +.+.|
T Consensus 11 ~DN~aL~~A~~----~~-~vlpvyi~dp~~~~~~~~~~~~~~fl~~sL~~L~~~L~~~G~~---L~v~-~~g~--~~~~l 79 (475)
T TIGR02766 11 EDNPALAAAAR----AG-PVIPVFVWAPEEEGQYYPGRVSRWWLKQSLAHLDQSLRSLGTC---LVTI-RSTD--TVAAL 79 (475)
T ss_pred chHHHHHHHHh----CC-CEEEEEEechHHhccccccHHHHHHHHHHHHHHHHHHHHcCCc---eEEE-eCCC--HHHHH
Confidence 44567765542 23 5777766554211 01 1 1123455556677777877 4422 2365 99999
Q ss_pred HHHHHHcCCcEEEEccc
Q 028129 172 GDVADELNLDLVIISME 188 (213)
Q Consensus 172 l~~A~e~~aDLIVmG~~ 188 (213)
.+.+++.+++-|..-..
T Consensus 80 ~~l~~~~~i~~v~~~~~ 96 (475)
T TIGR02766 80 LDCVRSTGATRLFFNHL 96 (475)
T ss_pred HHHHHHcCCCEEEEecc
Confidence 99999999999887664
No 382
>PF13271 DUF4062: Domain of unknown function (DUF4062)
Probab=20.80 E-value=2.9e+02 Score=18.94 Aligned_cols=49 Identities=12% Similarity=0.083 Sum_probs=29.2
Q ss_pred HHHHHHHHhCCCCceeEEEEEcccCCchHHHHHHHHHHcCCcEEEEcccC
Q 028129 140 SSIRWHLSEGGFQEFRLLERLGEGSSKPTAIIGDVADELNLDLVIISMEA 189 (213)
Q Consensus 140 ~~~~~~l~~~g~~~~~v~~~v~~G~~~p~~~Il~~A~e~~aDLIVmG~~g 189 (213)
+.+.+.+...|+.....+.....+. ++.+.+++.+++-++=+.++|.|-
T Consensus 16 ~~l~~~i~~~~~~~~~~e~~~a~~~-~~~~~cl~~v~~cDifI~ilG~rY 64 (83)
T PF13271_consen 16 DALIEAIRRLGCEPVGMEFFPASDQ-SPLEICLKEVDECDIFILILGNRY 64 (83)
T ss_pred HHHHHHHHHCCCeeeeeeeecCCCC-CHHHHHHHHHhhCCEEEEeecccc
Confidence 3444445555655333333333444 689999999998665566667753
No 383
>cd06167 LabA_like LabA_like proteins. A well conserved group of bacterial proteins with no defined function. LabA, a member from Synechococcus elongatus PCC 7942, has been shown to play a role in cyanobacterial circadian timing. It is required for negative feedback regulation of the autokinase/autophosphatase KaiC, a central component of the circadian clock system. In particular, LabA seems necessary for KaiC-dependent repression of gene expression.
Probab=20.74 E-value=2.4e+02 Score=21.15 Aligned_cols=41 Identities=10% Similarity=0.009 Sum_probs=20.1
Q ss_pred HHHHHHHHHcCCcEEEEcccCCCCCCchHHHHHhcCCCcEEEE
Q 028129 169 AIIGDVADELNLDLVIISMEAIHSKHVDANLLAEFIPCPVLLL 211 (213)
Q Consensus 169 ~~Il~~A~e~~aDLIVmG~~g~~~~Gs~~~~vl~~a~cPVLvV 211 (213)
..+++.+.++++|.||+-+... ........+++-.+.|.++
T Consensus 89 ~d~~~~~~~~~~d~ivLvSgD~--Df~~~i~~lr~~G~~V~v~ 129 (149)
T cd06167 89 IDALELAYKRRIDTIVLVSGDS--DFVPLVERLRELGKRVIVV 129 (149)
T ss_pred HHHHHHhhhcCCCEEEEEECCc--cHHHHHHHHHHcCCEEEEE
Confidence 3445555555666666665433 2222223344455555543
No 384
>cd06328 PBP1_SBP_like_2 Periplasmic solute-binding domain of active transport proteins found in gram-negative and gram-positive bacteria. Periplasmic solute-binding domain of active transport proteins found in gram-negative and gram-positive bacteria. Members of this group are initial receptors in the process of active transport across cellular membrane, but their substrate specificities are not known in detail. However, they closely resemble the group of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa. Moreover, this binding domain has high sequence identity to the family of hydrophobic amino acid transporters (HAAT), and thus it may also be involved in transport of amino acids.
Probab=20.72 E-value=5.4e+02 Score=22.02 Aligned_cols=64 Identities=9% Similarity=0.075 Sum_probs=31.1
Q ss_pred CCEEEEEEEeCCCCCChhhHHHHHHHHHHHHHhCCCCceeEEE--EEcccCCchHHHHHHHHHHcCCcEEEEcccC
Q 028129 116 GADITVVVIDERQKESLPEHENRLSSIRWHLSEGGFQEFRLLE--RLGEGSSKPTAIIGDVADELNLDLVIISMEA 189 (213)
Q Consensus 116 ~a~L~ll~V~~~~~~~~~~~~~~l~~~~~~l~~~g~~~~~v~~--~v~~G~~~p~~~Il~~A~e~~aDLIVmG~~g 189 (213)
+.++.+++.+... .+...+.+++.+.+.|++ +.. ....|.+|.. ..+..+++.++|.|++...+
T Consensus 136 ~~~v~~i~~~~~~------g~~~~~~~~~~~~~~G~~---vv~~~~~~~~~~d~~-~~v~~l~~~~pd~V~~~~~~ 201 (333)
T cd06328 136 GKKIATLAQDYAF------GRDGVAAFKAALEKLGAA---IVTEEYAPTDTTDFT-PYAQRLLDALKKVLFVIWAG 201 (333)
T ss_pred CCeEEEEecCccc------cHHHHHHHHHHHHhCCCE---EeeeeeCCCCCcchH-HHHHHHHhcCCCEEEEEecC
Confidence 4566666544422 223334445555666666 332 2223431333 33444455677887776543
No 385
>COG0137 ArgG Argininosuccinate synthase [Amino acid transport and metabolism]
Probab=20.71 E-value=6.8e+02 Score=23.16 Aligned_cols=93 Identities=25% Similarity=0.205 Sum_probs=54.7
Q ss_pred CCCcEEEEeeCCCCCCCHHHHHHHHHHHHHHhhcCCEEEEEEEeCCCCCChhhHHHHHHHHHHHHHhCCCCc--------
Q 028129 82 NFKHLLLPITDQNPYLSEGTRQAAATTAALAKKYGADITVVVIDERQKESLPEHENRLSSIRWHLSEGGFQE-------- 153 (213)
Q Consensus 82 ~~k~ILV~vD~~~~~~S~~s~~Al~~A~~LA~~~~a~L~ll~V~~~~~~~~~~~~~~l~~~~~~l~~~g~~~-------- 153 (213)
..++|++++. |.-...-++.| |-.++|.+++.+.++-.+.+ +.++.+++...+.|..+
T Consensus 3 ~~kkvvLAYS-----GGLDTSv~i~w---L~e~~~~eVia~tadvGQ~e------ed~~~i~eKA~~~Ga~~~~viD~re 68 (403)
T COG0137 3 KVKKVVLAYS-----GGLDTSVAIKW---LKEKGGAEVIAVTADVGQPE------EDLDAIREKALELGAEEAYVIDARE 68 (403)
T ss_pred CCcEEEEEec-----CCccHHHHHHH---HHHhcCceEEEEEEeCCCCh------HHhHHHHHHHHHhCCceEEEeecHH
Confidence 4578999999 65555555554 45566788888877766531 11222222221112110
Q ss_pred --------------------eeEEEEEcccCCchHHHHHHHHHHcCCcEEEEcccCC
Q 028129 154 --------------------FRLLERLGEGSSKPTAIIGDVADELNLDLVIISMEAI 190 (213)
Q Consensus 154 --------------------~~v~~~v~~G~~~p~~~Il~~A~e~~aDLIVmG~~g~ 190 (213)
|.....+.. . -.++.+++.|++.++|.|--|..|+
T Consensus 69 eF~~~yi~~~i~ana~Yeg~YpL~TalaR-P-LIak~lVe~A~k~ga~avaHGcTGK 123 (403)
T COG0137 69 EFVEDYIFPAIKANALYEGVYPLGTALAR-P-LIAKKLVEAAKKEGADAVAHGCTGK 123 (403)
T ss_pred HHHHHHHHHHHHhhceeeccccccchhhH-H-HHHHHHHHHHHHcCCCEEEecCCCC
Confidence 111111100 0 2468899999999999999999887
No 386
>TIGR01860 VNFD nitrogenase vanadium-iron protein, alpha chain. This model represents the alpha chain of the vanadium-containing component of the vanadium-iron nitrogenase compound I. The complex also includes a second alpha chain, two beta chains and two delta chains. Compount I interacts with compound II also known as the iron-protein which transfers electrons to compound I where the catalysis occurs.
Probab=20.70 E-value=6.9e+02 Score=23.22 Aligned_cols=83 Identities=12% Similarity=0.060 Sum_probs=45.2
Q ss_pred CCCcEEEEeeCCCCCCCHHHHHHHHHHHHHHhhcCCEEEEEEEeCCCCCChhhHHHHHHHHHHHHHhCCCCceeEEEEEc
Q 028129 82 NFKHLLLPITDQNPYLSEGTRQAAATTAALAKKYGADITVVVIDERQKESLPEHENRLSSIRWHLSEGGFQEFRLLERLG 161 (213)
Q Consensus 82 ~~k~ILV~vD~~~~~~S~~s~~Al~~A~~LA~~~~a~L~ll~V~~~~~~~~~~~~~~l~~~~~~l~~~g~~~~~v~~~v~ 161 (213)
.-|++.|..+ + ..++.++..|..+.|.++..+...... ++.++++. . .+.. ....+.
T Consensus 326 ~GkrvaI~~~-----~----~~~~~~~~~l~~ElGmevv~~~~~~~~-------~~~~~~~~---~-~~~~---~~i~i~ 382 (461)
T TIGR01860 326 QGKKMCIWTG-----G----PRLWHWTKALEDDLGMQVVAMSSKFGH-------QEDFEKVI---A-RGKE---GTIYID 382 (461)
T ss_pred CCCEEEEECC-----C----chHHHHHHHHHHhCCCEEEEEeeecCC-------HHHHHHHH---H-hcCC---CeEEEe
Confidence 4578888777 2 245667767777788886554222111 12222221 1 1222 112232
Q ss_pred ccCCchHHHHHHHHHHcCCcEEEEcccCC
Q 028129 162 EGSSKPTAIIGDVADELNLDLVIISMEAI 190 (213)
Q Consensus 162 ~G~~~p~~~Il~~A~e~~aDLIVmG~~g~ 190 (213)
.+ ..-+..+..++.++|||+=|++++
T Consensus 383 d~---~~~e~~~~~~~~~pDliig~s~~~ 408 (461)
T TIGR01860 383 DG---NELEFFEVLDLIKPDVIFTGPRVG 408 (461)
T ss_pred CC---CHHHHHHHHHhcCCCEEEeCCcch
Confidence 33 234466777889999998777664
No 387
>PRK05406 LamB/YcsF family protein; Provisional
Probab=20.64 E-value=5.5e+02 Score=22.07 Aligned_cols=102 Identities=14% Similarity=0.133 Sum_probs=57.3
Q ss_pred CHHHHHHHHHHHHHHhhcCCEEEEEEEeCCCCCCh---------hhHHH----HHHHHHHHHHhCCCCceeEEEEEccc-
Q 028129 98 SEGTRQAAATTAALAKKYGADITVVVIDERQKESL---------PEHEN----RLSSIRWHLSEGGFQEFRLLERLGEG- 163 (213)
Q Consensus 98 S~~s~~Al~~A~~LA~~~~a~L~ll~V~~~~~~~~---------~~~~~----~l~~~~~~l~~~g~~~~~v~~~v~~G- 163 (213)
.-.....++.++.+|++.|..+-. |..-++..++ .+... ++..+.......|.+ +.+.--+|
T Consensus 39 HAGDp~~M~~tv~lA~~~gV~IGA-HPgypD~~gFGRR~m~~s~~el~~~v~yQigAL~~~a~~~g~~---l~hVKPHGA 114 (246)
T PRK05406 39 HAGDPAVMRRTVRLAKENGVAIGA-HPGYPDLEGFGRRNMDLSPEELYALVLYQIGALQAIARAAGGR---VSHVKPHGA 114 (246)
T ss_pred cCCCHHHHHHHHHHHHHcCCeEcc-CCCCCccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCe---eEEeCccHH
Confidence 334557889999999998865532 3222222221 12221 222233344556665 33221122
Q ss_pred --------CCchHHHHHHHHHHcCCcEEEEcccCCCCCCchHHHHHhcCCCcEE
Q 028129 164 --------SSKPTAIIGDVADELNLDLVIISMEAIHSKHVDANLLAEFIPCPVL 209 (213)
Q Consensus 164 --------~~~p~~~Il~~A~e~~aDLIVmG~~g~~~~Gs~~~~vl~~a~cPVL 209 (213)
. ..++.|++.+++.+.+|++++..+ +.-...+++...+++
T Consensus 115 LYN~~~~d~-~~a~av~~ai~~~~~~l~l~~~~~-----s~~~~~A~~~Gl~~~ 162 (246)
T PRK05406 115 LYNMAAKDP-ALADAVAEAVAAVDPSLILVGLAG-----SELIRAAEEAGLRTA 162 (246)
T ss_pred HHHHHhcCH-HHHHHHHHHHHHhCCCcEEEecCC-----hHHHHHHHHcCCcEE
Confidence 2 477899999999999999998654 344444555555553
No 388
>cd06317 PBP1_ABC_sugar_binding_like_8 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Pperiplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=20.53 E-value=4.6e+02 Score=21.15 Aligned_cols=20 Identities=15% Similarity=0.013 Sum_probs=13.7
Q ss_pred HHHHHHHHHcCCcEEEEccc
Q 028129 169 AIIGDVADELNLDLVIISME 188 (213)
Q Consensus 169 ~~Il~~A~e~~aDLIVmG~~ 188 (213)
...++.+++.++=+|.++..
T Consensus 71 ~~~l~~~~~~~iPvV~~~~~ 90 (275)
T cd06317 71 IPGLRKAKQAGIPVVITNSN 90 (275)
T ss_pred HHHHHHHHHCCCcEEEeCCC
Confidence 45556677777788877753
No 389
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=20.44 E-value=2.8e+02 Score=23.55 Aligned_cols=39 Identities=21% Similarity=0.185 Sum_probs=20.9
Q ss_pred HHHHHHhCCCCceeEEEEEcccCCchHHHHHHHHHHcCCcEEEEcccC
Q 028129 142 IRWHLSEGGFQEFRLLERLGEGSSKPTAIIGDVADELNLDLVIISMEA 189 (213)
Q Consensus 142 ~~~~l~~~g~~~~~v~~~v~~G~~~p~~~Il~~A~e~~aDLIVmG~~g 189 (213)
+.+.+.+.|++ +.... . .+.+++..++.++|+|+...+|
T Consensus 28 i~~al~~~g~~---v~~i~--~----~~~~~~~~~~~~~D~v~~~~~g 66 (304)
T PRK01372 28 VLAALREAGYD---AHPID--P----GEDIAAQLKELGFDRVFNALHG 66 (304)
T ss_pred HHHHHHHCCCE---EEEEe--c----CcchHHHhccCCCCEEEEecCC
Confidence 33445566666 44321 2 1234455556678888876554
No 390
>TIGR02852 spore_dpaB dipicolinic acid synthetase, B subunit. Members of this family represent the B subunit of dipicolinic acid synthetase, an enzyme that synthesizes a small molecule that appears to confer heat stability to bacterial endospores such as those of Bacillus subtilis. The A and B subunits are together in what was originally designated the spoVF locus for stage V of endospore formation.
Probab=20.37 E-value=2.4e+02 Score=23.03 Aligned_cols=35 Identities=29% Similarity=0.281 Sum_probs=26.9
Q ss_pred CcEEEEeeCCCCCCCHHHHHHH-HHHHHHHhhcCCEEEEEEE
Q 028129 84 KHLLLPITDQNPYLSEGTRQAA-ATTAALAKKYGADITVVVI 124 (213)
Q Consensus 84 k~ILV~vD~~~~~~S~~s~~Al-~~A~~LA~~~~a~L~ll~V 124 (213)
++|++++. |+-.+-+++ +....|. +.|++++++.-
T Consensus 1 ~~I~lgIT-----Gs~~a~~a~~~ll~~L~-~~g~~V~vI~S 36 (187)
T TIGR02852 1 KRIGFGLT-----GSHCTLEAVMPQLEKLV-DEGAEVTPIVS 36 (187)
T ss_pred CEEEEEEe-----cHHHHHHHHHHHHHHHH-hCcCEEEEEEc
Confidence 57999999 899999996 6666664 45888876643
No 391
>TIGR03679 arCOG00187 arCOG00187 universal archaeal metal-binding-domain/4Fe-4S-binding-domain containing ABC transporter, ATP-binding protein. This model has the same scope as an archaeal COG (arCOG00187) and is found in all completely sequenced archaea and does not recognize any known non-archaeal genes.
Probab=20.32 E-value=5e+02 Score=21.42 Aligned_cols=85 Identities=12% Similarity=0.146 Sum_probs=39.4
Q ss_pred CCHHHHHHHHHHHHHHhhcCCEEEEE-EEeCCCCCChhhHHHHHHHHHHHHHhCCCCceeEEEEEcccCC-----chHHH
Q 028129 97 LSEGTRQAAATTAALAKKYGADITVV-VIDERQKESLPEHENRLSSIRWHLSEGGFQEFRLLERLGEGSS-----KPTAI 170 (213)
Q Consensus 97 ~S~~s~~Al~~A~~LA~~~~a~L~ll-~V~~~~~~~~~~~~~~l~~~~~~l~~~g~~~~~v~~~v~~G~~-----~p~~~ 170 (213)
|...|.-++..+ .+.|-+++++ ++.......+-.....++.++...+..|++ .......|.. +....
T Consensus 6 GGkDS~~al~~a----~~~G~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~lgip---~~~i~~~~~~~~~~~~l~~~ 78 (218)
T TIGR03679 6 GGKDSNYALYKA----LEEGHEVRCLITVVPENEESYMFHTPNIELTRLQAEALGIP---LVKIETSGEKEKEVEDLKGA 78 (218)
T ss_pred CcHHHHHHHHHH----HHcCCEEEEEEEeccCCCCccccCCCCHHHHHHHHHHhCCC---EEEEECCCCChHHHHHHHHH
Confidence 445555555444 3456677544 554332111100011233444455666777 3322222210 12233
Q ss_pred HHHHHHHcCCcEEEEcccC
Q 028129 171 IGDVADELNLDLVIISMEA 189 (213)
Q Consensus 171 Il~~A~e~~aDLIVmG~~g 189 (213)
+.+. .+.+++.||.|.-.
T Consensus 79 l~~~-~~~g~~~vv~G~i~ 96 (218)
T TIGR03679 79 LKEL-KREGVEGIVTGAIA 96 (218)
T ss_pred HHHH-HHcCCCEEEECCcc
Confidence 4444 44499999999964
No 392
>PF08968 DUF1885: Domain of unknown function (DUF1885); InterPro: IPR015062 This family consists of hypothetical proteins produced by bacteria of the Bacillus genus. ; PDB: 1T6A_A.
Probab=20.22 E-value=1.3e+02 Score=23.25 Aligned_cols=42 Identities=19% Similarity=0.280 Sum_probs=24.9
Q ss_pred cCCCcEEEEeeCCC---------CCCCHHH--HHHHHHHHHHHhhcCCEEEEE
Q 028129 81 TNFKHLLLPITDQN---------PYLSEGT--RQAAATTAALAKKYGADITVV 122 (213)
Q Consensus 81 ~~~k~ILV~vD~~~---------~~~S~~s--~~Al~~A~~LA~~~~a~L~ll 122 (213)
..|+.|+|.++.++ |.+.-.. .+|=++...||+..+++|+++
T Consensus 68 ~~Y~~I~iGVg~e~e~~~IQv~LP~~AThGDK~KANEfckfLAk~l~~EL~LF 120 (130)
T PF08968_consen 68 DRYKYIVIGVGTENEQSYIQVVLPDGATHGDKGKANEFCKFLAKKLKGELHLF 120 (130)
T ss_dssp TT--EEEEEEEEETTEEEEEEE--TT--HHHHHHHHHHHHHHHHHH-EEEE-T
T ss_pred CceeeEEEeeccCCcceEEEEECCCCCccCcchhHHHHHHHHHHHhhheeEEe
Confidence 56788888887321 3333333 367778888999999999986
No 393
>PRK05447 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional
Probab=20.19 E-value=2e+02 Score=26.43 Aligned_cols=45 Identities=16% Similarity=0.085 Sum_probs=35.2
Q ss_pred EcccCCchHHHHHHHHHHcCCcEEEEcccCCCCCCchHHHHHhcCCCcEEE
Q 028129 160 LGEGSSKPTAIIGDVADELNLDLVIISMEAIHSKHVDANLLAEFIPCPVLL 210 (213)
Q Consensus 160 v~~G~~~p~~~Il~~A~e~~aDLIVmG~~g~~~~Gs~~~~vl~~a~cPVLv 210 (213)
+..|. +.+.+.++..++|+||.+.-|. .|+...+-+-++..+|++
T Consensus 76 v~~G~----~~~~~l~~~~~vD~Vv~Ai~G~--aGl~ptl~Ai~aGK~VaL 120 (385)
T PRK05447 76 VLAGE----EGLCELAALPEADVVVAAIVGA--AGLLPTLAAIRAGKRIAL 120 (385)
T ss_pred EEECh----hHHHHHhcCCCCCEEEEeCcCc--ccHHHHHHHHHCCCcEEE
Confidence 34475 7888999888999999999987 787776666777777765
No 394
>TIGR00177 molyb_syn molybdenum cofactor synthesis domain. The Drosophila protein cinnamon, the Arabidopsis protein cnx1, and rat protein gephyrin each have one domain like MoeA and one like MoaB and Mog. These domains are, however, distantly related to each other, as captured by this model. Gephyrin is unusual in that it seems to be a tubulin-binding neuroprotein involved in the clustering of both blycine receptors and GABA receptors, rather than a protein of molybdenum cofactor biosynthesis.
Probab=20.18 E-value=3e+02 Score=21.00 Aligned_cols=40 Identities=18% Similarity=0.177 Sum_probs=20.9
Q ss_pred HHHHHHhCCCCceeEEEEEcccCCchHHHHHHHHHH--cCCcEEEEc
Q 028129 142 IRWHLSEGGFQEFRLLERLGEGSSKPTAIIGDVADE--LNLDLVIIS 186 (213)
Q Consensus 142 ~~~~l~~~g~~~~~v~~~v~~G~~~p~~~Il~~A~e--~~aDLIVmG 186 (213)
+.+.+.+.|++ +......++ + .+.|.+..++ .++|+||..
T Consensus 32 l~~~l~~~G~~---v~~~~~v~D-d-~~~i~~~l~~~~~~~DliItt 73 (144)
T TIGR00177 32 LAALLEEAGFN---VSRLGIVPD-D-PEEIREILRKAVDEADVVLTT 73 (144)
T ss_pred HHHHHHHCCCe---EEEEeecCC-C-HHHHHHHHHHHHhCCCEEEEC
Confidence 34456666766 554444454 3 3444443332 267888873
No 395
>TIGR01521 FruBisAldo_II_B fructose-bisphosphate aldolase, class II, Calvin cycle subtype. Members of this family are class II examples of the enzyme fructose-bisphosphate aldolase, an enzyme both of glycolysis and (in the opposite direction) of the Calvin cycle of CO2 fixation. A deep split separates the tightly conserved yeast/E. coli/Mycobacterium subtype (all species lacking the Calvin cycle) represented by model TIGR01520 from a broader group of aldolases that includes both tagatose- and fructose-bisphosphate aldolases. This model represents a distinct, elongated, very well conserved subtype within the latter group. Most species with this aldolase subtype have the Calvin cycle.
Probab=20.16 E-value=5e+02 Score=23.49 Aligned_cols=62 Identities=18% Similarity=0.175 Sum_probs=38.6
Q ss_pred HHHhCCCCceeEEEEEcccCCchHHHHHHHHHHcCCcEEEEcccCCCC-CCchHH-----HHHhcCC-CcEEE
Q 028129 145 HLSEGGFQEFRLLERLGEGSSKPTAIIGDVADELNLDLVIISMEAIHS-KHVDAN-----LLAEFIP-CPVLL 210 (213)
Q Consensus 145 ~l~~~g~~~~~v~~~v~~G~~~p~~~Il~~A~e~~aDLIVmG~~g~~~-~Gs~~~-----~vl~~a~-cPVLv 210 (213)
...+.++. +-..-..+. .-..+|++.|++.+..+|+..+.+... .|.... .++.+++ +||.+
T Consensus 10 ~A~~~~yA---V~AfN~~n~-e~~~aii~AAEe~~sPvIlq~s~~~~~~~g~~~~~~~~~~~ae~~~~VPVal 78 (347)
T TIGR01521 10 HAAEFGYG---VPAFNVNNM-EQMRAIMEAADKTDSPVILQASRGARSYAGAPFLRHLILAAIEEYPHIPVVM 78 (347)
T ss_pred HHHHcCce---EEEEeeCCH-HHHHHHHHHHHHhCCCEEEECCcchhhhCCHHHHHHHHHHHHHhCCCCcEEE
Confidence 33444444 444333333 478999999999999999998876311 232211 1267775 89865
No 396
>TIGR01064 pyruv_kin pyruvate kinase. This enzyme is a homotetramer. Some forms are active only in the presence of fructose-1,6-bisphosphate or similar phosphorylated sugars.
Probab=20.16 E-value=2.2e+02 Score=26.72 Aligned_cols=41 Identities=17% Similarity=0.231 Sum_probs=31.5
Q ss_pred hHHHHHHHHHHcCCcEEEEcccCCCCCCchHHHHH-hcCCCcEEEE
Q 028129 167 PTAIIGDVADELNLDLVIISMEAIHSKHVDANLLA-EFIPCPVLLL 211 (213)
Q Consensus 167 p~~~Il~~A~e~~aDLIVmG~~g~~~~Gs~~~~vl-~~a~cPVLvV 211 (213)
.+...++.|+..+++.||+-++ +|.+...+. .+-+|||+.+
T Consensus 361 ia~~a~~~a~~~~akaIVv~T~----SG~TA~~vSr~rp~~PIiAv 402 (473)
T TIGR01064 361 IALSAVEAAEKLDAKAIVVLTE----SGRTARLLSKYRPNAPIIAV 402 (473)
T ss_pred HHHHHHHHHhhcCCCEEEEEcC----ChHHHHHHHhhCCCCCEEEE
Confidence 4556667888999999999876 467777774 4567999876
No 397
>cd06274 PBP1_FruR Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs. Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs, all of which are a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to members of the type I periplasmic binding protein superfamily. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor
Probab=20.10 E-value=4.7e+02 Score=21.08 Aligned_cols=17 Identities=12% Similarity=0.112 Sum_probs=11.5
Q ss_pred HHHHHHcCCcEEEEccc
Q 028129 172 GDVADELNLDLVIISME 188 (213)
Q Consensus 172 l~~A~e~~aDLIVmG~~ 188 (213)
++.+.+.+.-+|.++..
T Consensus 71 ~~~~~~~~ipvV~~~~~ 87 (264)
T cd06274 71 YYLCQKAGLPVVALDRP 87 (264)
T ss_pred HHHHHhcCCCEEEecCc
Confidence 55566667777777764
No 398
>TIGR01861 ANFD nitrogenase iron-iron protein, alpha chain. This model represents the all-iron variant of the nitrogenase component I alpha chain. Molybdenum-iron and vanadium iron forms are also found. The complete complex contains two alpha chains, two beta chains and two delta chains. The component I associates with component II also known as the iron protein which serves to provide electrons for component I.
Probab=20.09 E-value=7.6e+02 Score=23.48 Aligned_cols=83 Identities=10% Similarity=-0.020 Sum_probs=44.4
Q ss_pred CCCcEEEEeeCCCCCCCHHHHHHHHHHHHHHhhcCCEEEEEEEeCCCCCChhhHHHHHHHHHHHHHhCCCCceeEEEEEc
Q 028129 82 NFKHLLLPITDQNPYLSEGTRQAAATTAALAKKYGADITVVVIDERQKESLPEHENRLSSIRWHLSEGGFQEFRLLERLG 161 (213)
Q Consensus 82 ~~k~ILV~vD~~~~~~S~~s~~Al~~A~~LA~~~~a~L~ll~V~~~~~~~~~~~~~~l~~~~~~l~~~g~~~~~v~~~v~ 161 (213)
.=|+++|..| + ..+..++..+....|.++..+...... ....++..+.+ +-. .. .+.
T Consensus 327 ~GKrvai~~g-----g----~~~~~~~~~l~~ElGmevv~~~t~~~~-------~~d~~~~~~~~---~~~---~~-~i~ 383 (513)
T TIGR01861 327 KGKKVCLWPG-----G----SKLWHWAHVIEEEMGLKVVSVYSKFGH-------QGDMEKGVARC---GEG---AL-AID 383 (513)
T ss_pred CCCEEEEECC-----c----hHHHHHHHHHHHhCCCEEEEEeccCCC-------HHHHHHHHHhC---CCC---cE-Eec
Confidence 4578999888 3 255555655655678877554332211 11122222222 211 11 121
Q ss_pred ccCCchHHHHHHHHHHcCCcEEEEcccCC
Q 028129 162 EGSSKPTAIIGDVADELNLDLVIISMEAI 190 (213)
Q Consensus 162 ~G~~~p~~~Il~~A~e~~aDLIVmG~~g~ 190 (213)
.. -.-+..+..++.++|||+=|++++
T Consensus 384 D~---~~~e~~~~l~~~~~Dllig~s~~~ 409 (513)
T TIGR01861 384 DP---NELEGLEAMEMLKPDIILTGKRPG 409 (513)
T ss_pred CC---CHHHHHHHHHhcCCCEEEecCccc
Confidence 12 223445677888999999888875
Done!