Query 028129
Match_columns 213
No_of_seqs 278 out of 1394
Neff 7.2
Searched_HMMs 29240
Date Mon Mar 25 10:39:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028129.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028129hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3s3t_A Nucleotide-binding prot 99.9 2.9E-21 1E-25 147.9 15.1 122 81-212 3-146 (146)
2 3hgm_A Universal stress protei 99.9 5.5E-21 1.9E-25 146.3 14.4 123 82-211 1-147 (147)
3 3dlo_A Universal stress protei 99.9 1.5E-20 5.2E-25 147.2 16.0 126 79-212 20-155 (155)
4 1mjh_A Protein (ATP-binding do 99.8 2.2E-20 7.5E-25 145.8 14.2 121 82-212 4-158 (162)
5 3fg9_A Protein of universal st 99.8 3.4E-20 1.2E-24 144.1 15.1 127 79-212 11-156 (156)
6 3idf_A USP-like protein; unive 99.8 3.9E-20 1.3E-24 140.5 14.0 118 83-212 1-138 (138)
7 2dum_A Hypothetical protein PH 99.8 3.2E-20 1.1E-24 146.1 13.7 122 81-212 3-155 (170)
8 2z08_A Universal stress protei 99.8 4.3E-20 1.5E-24 140.5 13.7 121 82-212 1-137 (137)
9 1tq8_A Hypothetical protein RV 99.8 9.8E-20 3.4E-24 143.7 14.6 126 78-213 12-158 (163)
10 3tnj_A Universal stress protei 99.8 1E-19 3.6E-24 140.0 13.2 125 80-213 3-147 (150)
11 3fdx_A Putative filament prote 99.8 1.3E-19 4.5E-24 138.2 13.4 122 84-212 2-143 (143)
12 2gm3_A Unknown protein; AT3G01 99.8 5.8E-19 2E-23 139.7 13.1 122 81-212 3-162 (175)
13 3loq_A Universal stress protei 99.8 1.4E-18 4.9E-23 148.0 15.4 144 53-213 142-290 (294)
14 3mt0_A Uncharacterized protein 99.8 8.1E-19 2.8E-23 149.5 13.6 150 51-213 106-276 (290)
15 1jmv_A USPA, universal stress 99.8 6.7E-19 2.3E-23 134.1 11.4 118 82-213 1-138 (141)
16 1q77_A Hypothetical protein AQ 99.8 6.5E-19 2.2E-23 133.9 11.0 116 81-212 2-138 (138)
17 3cis_A Uncharacterized protein 99.8 5.4E-18 1.8E-22 145.6 15.2 151 51-213 139-306 (309)
18 3olq_A Universal stress protei 99.8 9.3E-18 3.2E-22 144.0 13.8 149 52-213 129-305 (319)
19 3olq_A Universal stress protei 99.8 6.8E-18 2.3E-22 144.9 12.9 124 79-212 3-149 (319)
20 3mt0_A Uncharacterized protein 99.7 7.3E-18 2.5E-22 143.6 12.3 119 79-212 3-127 (290)
21 3ab8_A Putative uncharacterize 99.7 2.1E-17 7.3E-22 138.6 14.2 140 51-212 127-268 (268)
22 3loq_A Universal stress protei 99.7 1.9E-17 6.5E-22 141.1 10.2 123 78-212 17-161 (294)
23 3cis_A Uncharacterized protein 99.7 1.5E-16 5E-21 136.6 14.3 122 79-212 15-160 (309)
24 3ab8_A Putative uncharacterize 99.7 2.1E-16 7.1E-21 132.6 12.3 117 84-212 1-148 (268)
25 3ih5_A Electron transfer flavo 95.5 0.035 1.2E-06 45.3 7.1 96 83-189 3-101 (217)
26 2iel_A Hypothetical protein TT 94.5 0.94 3.2E-05 34.3 11.9 118 84-211 2-133 (138)
27 1o97_C Electron transferring f 92.6 0.34 1.2E-05 40.6 7.4 99 97-209 35-143 (264)
28 1efv_B Electron transfer flavo 92.6 2.8 9.6E-05 34.8 13.0 98 97-209 38-147 (255)
29 1efp_B ETF, protein (electron 91.4 2.7 9.2E-05 34.8 11.5 101 97-209 35-144 (252)
30 1wy5_A TILS, hypothetical UPF0 91.0 2.8 9.4E-05 35.5 11.5 96 82-189 23-135 (317)
31 4b4k_A N5-carboxyaminoimidazol 90.8 2.6 9E-05 33.3 10.2 70 137-213 36-108 (181)
32 4grd_A N5-CAIR mutase, phospho 90.6 2.3 7.9E-05 33.4 9.7 69 137-212 26-97 (173)
33 3a2k_A TRNA(Ile)-lysidine synt 90.3 3.5 0.00012 37.0 12.1 99 83-190 18-130 (464)
34 2ywx_A Phosphoribosylaminoimid 89.9 3.2 0.00011 32.1 9.8 70 137-213 13-82 (157)
35 3trh_A Phosphoribosylaminoimid 89.0 3.3 0.00011 32.4 9.4 70 137-213 20-92 (169)
36 3kuu_A Phosphoribosylaminoimid 88.7 4.2 0.00014 32.0 9.8 69 137-212 26-97 (174)
37 1xmp_A PURE, phosphoribosylami 88.5 4.6 0.00016 31.6 9.9 69 137-212 25-96 (170)
38 3oow_A Phosphoribosylaminoimid 88.1 4.7 0.00016 31.4 9.7 70 137-213 19-91 (166)
39 3ors_A N5-carboxyaminoimidazol 87.4 5.3 0.00018 31.1 9.6 69 137-212 17-88 (163)
40 3lp6_A Phosphoribosylaminoimid 86.9 4.9 0.00017 31.6 9.2 69 137-212 21-92 (174)
41 1u11_A PURE (N5-carboxyaminoim 86.9 5.5 0.00019 31.5 9.6 69 137-212 35-106 (182)
42 3grc_A Sensor protein, kinase; 86.9 6.1 0.00021 27.8 9.4 63 140-211 20-86 (140)
43 2lpm_A Two-component response 86.4 0.47 1.6E-05 34.9 3.0 78 118-211 8-85 (123)
44 3to5_A CHEY homolog; alpha(5)b 86.2 4.1 0.00014 30.1 8.2 78 118-211 12-93 (134)
45 3rg8_A Phosphoribosylaminoimid 86.1 5 0.00017 31.0 8.8 70 137-213 16-89 (159)
46 3cnb_A DNA-binding response re 86.0 7 0.00024 27.3 9.9 43 169-211 44-90 (143)
47 2xry_A Deoxyribodipyrimidine p 85.9 5.9 0.0002 35.5 10.7 107 97-211 47-159 (482)
48 3gt7_A Sensor protein; structu 85.8 4.9 0.00017 29.2 8.5 63 140-211 21-87 (154)
49 3cg4_A Response regulator rece 85.5 3.7 0.00013 29.0 7.6 43 169-211 41-87 (142)
50 3i42_A Response regulator rece 85.2 6.6 0.00023 27.1 8.7 43 169-211 37-83 (127)
51 2zay_A Response regulator rece 84.8 3.1 0.0001 29.7 6.9 43 169-211 42-88 (147)
52 1o4v_A Phosphoribosylaminoimid 84.7 6.5 0.00022 31.1 9.0 69 137-212 27-98 (183)
53 3p9x_A Phosphoribosylglycinami 84.3 8.4 0.00029 31.0 9.8 88 83-190 2-92 (211)
54 3gl9_A Response regulator; bet 84.2 8.1 0.00028 26.7 8.8 62 141-211 17-82 (122)
55 3kht_A Response regulator; PSI 84.0 7.3 0.00025 27.6 8.7 65 140-211 19-87 (144)
56 3t6k_A Response regulator rece 83.7 9.4 0.00032 26.9 9.1 43 169-211 38-84 (136)
57 3f6c_A Positive transcription 82.0 8.4 0.00029 26.7 8.2 64 140-211 15-80 (134)
58 3hzh_A Chemotaxis response reg 80.9 9.2 0.00031 27.7 8.3 22 82-109 35-56 (157)
59 4e7p_A Response regulator; DNA 80.8 8.1 0.00028 27.7 7.9 43 169-211 56-100 (150)
60 2j48_A Two-component sensor ki 80.7 10 0.00034 25.2 8.2 43 169-211 35-81 (119)
61 3nhm_A Response regulator; pro 80.6 12 0.0004 25.9 8.7 43 169-211 37-83 (133)
62 3eod_A Protein HNR; response r 80.5 12 0.0004 25.8 8.5 43 169-211 41-85 (130)
63 3hv2_A Response regulator/HD d 80.3 8.2 0.00028 27.7 7.8 16 173-188 52-67 (153)
64 3umv_A Deoxyribodipyrimidine p 80.2 6 0.0002 36.0 8.3 81 97-185 48-135 (506)
65 1qkk_A DCTD, C4-dicarboxylate 80.1 4.4 0.00015 29.3 6.2 43 169-211 37-81 (155)
66 3cg0_A Response regulator rece 79.5 8.2 0.00028 26.9 7.4 20 169-188 44-63 (140)
67 3c3m_A Response regulator rece 79.4 14 0.00047 25.9 9.1 18 171-188 39-56 (138)
68 1mb3_A Cell division response 79.3 12 0.00042 25.3 8.4 42 170-211 36-81 (124)
69 1jbe_A Chemotaxis protein CHEY 79.3 13 0.00043 25.5 8.3 43 169-211 39-85 (128)
70 3kcq_A Phosphoribosylglycinami 79.1 6.2 0.00021 31.9 7.2 89 80-190 5-93 (215)
71 3lte_A Response regulator; str 79.0 13 0.00045 25.5 8.6 34 169-202 40-73 (132)
72 2gkg_A Response regulator homo 79.0 9 0.00031 26.0 7.3 15 173-187 43-57 (127)
73 3m6m_D Sensory/regulatory prot 78.7 14 0.00048 26.2 8.6 43 169-211 48-96 (143)
74 3f6p_A Transcriptional regulat 78.6 13 0.00046 25.3 8.5 43 169-211 36-79 (120)
75 3mm4_A Histidine kinase homolo 78.3 19 0.00065 27.6 9.8 8 52-59 30-37 (206)
76 1o97_D Electron transferring f 77.7 6.4 0.00022 33.7 7.3 108 86-208 3-114 (320)
77 3h5i_A Response regulator/sens 77.7 16 0.00054 25.7 8.6 34 178-211 49-84 (140)
78 3hdg_A Uncharacterized protein 77.6 11 0.00037 26.3 7.6 43 169-211 41-85 (137)
79 1zun_A Sulfate adenylyltransfe 77.4 11 0.00037 32.2 8.7 97 80-190 43-157 (325)
80 1k68_A Phytochrome response re 77.3 11 0.00039 25.9 7.6 34 178-211 54-91 (140)
81 2rjn_A Response regulator rece 76.8 13 0.00045 26.6 8.0 43 169-211 41-85 (154)
82 3ilh_A Two component response 76.8 16 0.00056 25.4 9.7 34 178-211 59-98 (146)
83 3hdv_A Response regulator; PSI 76.6 16 0.00055 25.3 8.6 9 180-188 53-61 (136)
84 2qzj_A Two-component response 75.7 11 0.00039 26.4 7.3 19 170-188 39-57 (136)
85 3cz5_A Two-component response 75.7 16 0.00056 26.0 8.3 43 169-211 41-85 (153)
86 3h1g_A Chemotaxis protein CHEY 75.4 17 0.00059 25.0 8.9 65 140-211 19-87 (129)
87 3heb_A Response regulator rece 75.4 17 0.00057 25.9 8.2 35 177-211 57-95 (152)
88 2rdm_A Response regulator rece 74.2 17 0.00059 24.9 7.8 17 172-188 42-59 (132)
89 2b4a_A BH3024; flavodoxin-like 74.1 19 0.00066 25.0 8.3 43 169-211 49-94 (138)
90 2qr3_A Two-component system re 73.9 19 0.00065 24.9 8.1 20 169-188 37-56 (140)
91 1srr_A SPO0F, sporulation resp 73.7 18 0.00063 24.5 8.7 42 170-211 38-81 (124)
92 3jte_A Response regulator rece 71.7 22 0.00075 24.8 8.0 12 177-188 47-58 (143)
93 3r0j_A Possible two component 71.7 20 0.00067 28.3 8.5 13 175-187 63-75 (250)
94 1kgs_A DRRD, DNA binding respo 71.7 24 0.00082 26.9 8.8 43 169-211 36-80 (225)
95 3cfy_A Putative LUXO repressor 71.4 19 0.00066 25.2 7.6 17 172-188 41-57 (137)
96 3eul_A Possible nitrate/nitrit 71.1 23 0.0008 25.1 8.1 20 170-189 52-71 (152)
97 3tqr_A Phosphoribosylglycinami 71.0 25 0.00084 28.2 8.8 87 83-190 5-94 (215)
98 3kyj_B CHEY6 protein, putative 70.9 24 0.00083 24.7 8.5 43 169-211 49-93 (145)
99 1ys7_A Transcriptional regulat 70.8 26 0.00088 26.9 8.8 43 169-211 41-85 (233)
100 4dad_A Putative pilus assembly 70.7 5.8 0.0002 28.2 4.6 10 178-187 66-75 (146)
101 3ecs_A Translation initiation 70.5 10 0.00034 32.5 6.6 83 110-211 139-229 (315)
102 2pln_A HP1043, response regula 70.1 22 0.00076 24.6 7.7 21 168-188 73-95 (137)
103 3rqi_A Response regulator prot 69.8 18 0.00062 27.0 7.5 42 170-211 42-85 (184)
104 3da8_A Probable 5'-phosphoribo 69.8 25 0.00086 28.2 8.6 87 82-190 11-100 (215)
105 1xhf_A DYE resistance, aerobic 69.5 23 0.00078 23.9 9.0 43 169-211 37-80 (123)
106 2qsj_A DNA-binding response re 69.2 27 0.00094 24.7 8.3 43 169-211 39-84 (154)
107 1efv_A Electron transfer flavo 69.2 9.4 0.00032 32.6 6.2 90 86-189 4-96 (315)
108 3crn_A Response regulator rece 69.2 25 0.00086 24.2 8.7 19 170-188 38-56 (132)
109 2qxy_A Response regulator; reg 68.6 12 0.0004 26.3 5.9 18 170-187 39-56 (142)
110 2h31_A Multifunctional protein 67.9 27 0.00091 31.2 9.0 70 137-213 279-352 (425)
111 1s8n_A Putative antiterminator 67.8 36 0.0012 25.6 9.3 19 170-188 49-67 (205)
112 2jba_A Phosphate regulon trans 67.8 11 0.00038 25.7 5.5 19 170-188 37-55 (127)
113 1mvo_A PHOP response regulator 67.5 27 0.00093 24.0 8.8 15 174-188 42-56 (136)
114 3lua_A Response regulator rece 67.3 10 0.00035 26.6 5.3 19 170-188 40-59 (140)
115 2pl1_A Transcriptional regulat 66.9 26 0.00088 23.5 8.8 43 169-211 34-78 (121)
116 1k66_A Phytochrome response re 66.8 29 0.00099 24.1 8.5 34 178-211 61-98 (149)
117 2wq7_A RE11660P; lyase-DNA com 66.6 33 0.0011 31.2 9.7 84 97-187 39-132 (543)
118 2qvg_A Two component response 66.5 30 0.001 24.0 8.4 11 178-188 58-68 (143)
119 2a0u_A Initiation factor 2B; S 66.3 13 0.00045 32.6 6.7 60 142-211 229-296 (383)
120 2ayx_A Sensor kinase protein R 66.0 20 0.0007 28.5 7.5 42 170-211 164-207 (254)
121 1zgz_A Torcad operon transcrip 65.9 27 0.00093 23.4 9.2 43 169-211 36-79 (122)
122 2ywr_A Phosphoribosylglycinami 65.8 37 0.0013 27.0 8.9 23 168-190 69-91 (216)
123 1yio_A Response regulatory pro 65.7 24 0.00084 26.5 7.6 42 170-211 39-82 (208)
124 1dbw_A Transcriptional regulat 65.4 29 0.00099 23.6 8.7 20 169-188 37-56 (126)
125 2a9o_A Response regulator; ess 65.4 27 0.00093 23.2 8.8 41 171-211 37-78 (120)
126 1tmy_A CHEY protein, TMY; chem 65.0 28 0.00096 23.3 8.6 16 173-188 41-56 (120)
127 3n53_A Response regulator rece 64.9 32 0.0011 23.9 8.2 43 169-211 36-82 (140)
128 2nz2_A Argininosuccinate synth 64.0 47 0.0016 29.3 9.9 91 83-190 5-122 (413)
129 2oqr_A Sensory transduction pr 63.9 44 0.0015 25.5 8.9 42 170-211 39-81 (230)
130 3k9c_A Transcriptional regulat 63.8 54 0.0018 26.1 10.7 28 98-125 23-50 (289)
131 3o1l_A Formyltetrahydrofolate 63.7 28 0.00094 29.5 8.0 86 82-190 104-192 (302)
132 3a10_A Response regulator; pho 63.4 30 0.001 23.0 9.4 43 169-211 35-79 (116)
133 2oq2_A Phosphoadenosine phosph 62.7 44 0.0015 27.2 9.0 44 79-128 37-80 (261)
134 3snk_A Response regulator CHEY 62.6 5.4 0.00018 28.0 3.0 15 174-188 54-68 (135)
135 3c97_A Signal transduction his 62.0 37 0.0013 23.6 8.3 21 169-189 44-64 (140)
136 2qv0_A Protein MRKE; structura 61.9 37 0.0013 23.5 8.8 21 169-189 45-65 (143)
137 1meo_A Phosophoribosylglycinam 61.9 57 0.0019 25.8 9.2 87 84-190 1-90 (209)
138 1p6q_A CHEY2; chemotaxis, sign 61.5 27 0.00093 23.7 6.6 44 168-211 40-87 (129)
139 2gwr_A DNA-binding response re 61.5 34 0.0012 26.5 7.9 12 176-187 46-57 (238)
140 3eq2_A Probable two-component 61.2 39 0.0013 28.7 8.7 77 118-211 5-83 (394)
141 1t9k_A Probable methylthioribo 61.1 11 0.00038 32.7 5.1 84 112-211 176-267 (347)
142 1dz3_A Stage 0 sporulation pro 59.8 38 0.0013 23.1 8.9 21 169-189 38-58 (130)
143 3av3_A Phosphoribosylglycinami 59.6 60 0.002 25.7 9.0 87 83-190 3-93 (212)
144 1kor_A Argininosuccinate synth 59.4 43 0.0015 29.3 8.8 91 84-190 1-118 (400)
145 2qv7_A Diacylglycerol kinase D 59.4 27 0.00093 29.4 7.3 37 83-121 24-60 (337)
146 3b2n_A Uncharacterized protein 58.6 41 0.0014 23.1 7.6 42 170-211 40-83 (133)
147 1t5o_A EIF2BD, translation ini 58.5 11 0.00037 32.8 4.6 84 112-211 174-264 (351)
148 2hma_A Probable tRNA (5-methyl 58.0 67 0.0023 27.7 9.7 97 83-189 9-133 (376)
149 3auf_A Glycinamide ribonucleot 57.8 72 0.0025 25.6 9.3 87 83-190 22-112 (229)
150 4ds3_A Phosphoribosylglycinami 57.8 37 0.0013 27.1 7.4 87 84-190 8-97 (209)
151 1a04_A Nitrate/nitrite respons 57.7 58 0.002 24.5 8.6 42 170-211 42-85 (215)
152 1k92_A Argininosuccinate synth 57.6 57 0.002 29.2 9.4 96 80-190 7-132 (455)
153 2yvk_A Methylthioribose-1-phos 57.0 10 0.00034 33.3 4.2 60 142-211 225-292 (374)
154 3n0r_A Response regulator; sig 56.6 80 0.0027 25.7 10.7 76 119-211 161-239 (286)
155 1iv0_A Hypothetical protein; r 56.5 25 0.00087 24.5 5.6 23 166-188 38-60 (98)
156 1vbk_A Hypothetical protein PH 56.3 88 0.003 26.1 10.1 82 83-189 179-265 (307)
157 3g40_A Na-K-CL cotransporter; 55.9 93 0.0032 26.3 11.8 115 85-212 22-145 (294)
158 3kto_A Response regulator rece 55.4 9.2 0.00031 26.8 3.2 13 175-187 46-58 (136)
159 3t8y_A CHEB, chemotaxis respon 54.9 57 0.0019 23.5 8.9 17 172-188 64-80 (164)
160 1y80_A Predicted cobalamin bin 54.3 28 0.00097 27.1 6.2 41 142-188 108-148 (210)
161 3s40_A Diacylglycerol kinase; 54.3 39 0.0013 28.0 7.3 39 82-122 7-45 (304)
162 1ni5_A Putative cell cycle pro 54.0 81 0.0028 27.6 9.7 97 81-189 11-118 (433)
163 1jkx_A GART;, phosphoribosylgl 53.7 81 0.0028 24.9 9.5 86 85-190 2-90 (212)
164 3q9s_A DNA-binding response re 53.5 43 0.0015 26.4 7.3 7 85-91 39-45 (249)
165 3dbi_A Sugar-binding transcrip 53.3 90 0.0031 25.4 10.5 17 171-187 135-151 (338)
166 2i2x_B MTAC, methyltransferase 53.2 49 0.0017 26.9 7.7 41 143-189 144-184 (258)
167 3u7q_B Nitrogenase molybdenum- 52.8 61 0.0021 29.4 8.9 85 82-190 363-449 (523)
168 3c3w_A Two component transcrip 52.5 30 0.001 26.7 6.0 43 169-211 37-81 (225)
169 3qk7_A Transcriptional regulat 51.9 88 0.003 24.8 10.9 76 98-188 22-97 (294)
170 2r25_B Osmosensing histidine p 51.9 56 0.0019 22.5 9.5 34 178-211 51-87 (133)
171 3klo_A Transcriptional regulat 51.8 17 0.00058 28.1 4.5 45 167-211 42-89 (225)
172 1vb5_A Translation initiation 51.2 42 0.0014 27.8 7.0 79 114-211 131-217 (276)
173 3a11_A Translation initiation 51.1 17 0.00057 31.3 4.6 81 112-211 161-249 (338)
174 3lou_A Formyltetrahydrofolate 50.7 1.1E+02 0.0037 25.5 11.1 86 83-190 95-182 (292)
175 2pg3_A Queuosine biosynthesis 50.3 89 0.003 24.4 9.1 37 83-128 2-38 (232)
176 1i3c_A Response regulator RCP1 50.2 63 0.0022 22.7 9.8 34 178-211 60-97 (149)
177 1a2o_A CHEB methylesterase; ba 50.1 87 0.003 26.5 9.0 43 169-211 39-82 (349)
178 1g63_A Epidermin modifying enz 50.1 12 0.00042 29.2 3.3 38 82-125 1-38 (181)
179 2hqr_A Putative transcriptiona 50.0 39 0.0013 25.7 6.3 39 169-211 34-74 (223)
180 1np7_A DNA photolyase; protein 49.9 89 0.0031 27.8 9.4 80 97-187 16-108 (489)
181 1zh2_A KDP operon transcriptio 49.1 55 0.0019 21.6 7.4 13 176-188 42-54 (121)
182 1w25_A Stalked-cell differenti 48.7 82 0.0028 27.1 8.9 43 169-211 35-81 (459)
183 3n0v_A Formyltetrahydrofolate 48.4 1.2E+02 0.004 25.2 10.7 86 83-190 90-177 (286)
184 1sur_A PAPS reductase; assimil 48.4 92 0.0031 24.0 9.1 93 81-190 41-158 (215)
185 2bon_A Lipid kinase; DAG kinas 48.0 79 0.0027 26.4 8.4 36 81-121 27-62 (332)
186 3o74_A Fructose transport syst 47.7 95 0.0032 24.0 9.3 78 98-189 14-92 (272)
187 1jq5_A Glycerol dehydrogenase; 47.6 48 0.0016 28.3 7.0 10 179-188 110-119 (370)
188 1ccw_A Protein (glutamate muta 47.5 41 0.0014 24.5 5.8 41 143-189 24-64 (137)
189 2j4d_A Cryptochrome 3, cryptoc 47.4 1E+02 0.0036 27.7 9.5 80 97-187 50-143 (525)
190 1efp_A ETF, protein (electron 47.4 82 0.0028 26.5 8.3 106 86-209 2-110 (307)
191 3l52_A Orotidine 5'-phosphate 47.3 52 0.0018 27.6 7.0 100 84-188 23-135 (284)
192 3zqu_A Probable aromatic acid 46.8 26 0.00087 28.1 4.8 38 81-124 2-39 (209)
193 3gv0_A Transcriptional regulat 46.2 78 0.0027 25.0 7.8 20 169-188 79-98 (288)
194 1ta9_A Glycerol dehydrogenase; 45.9 59 0.002 28.9 7.5 67 138-212 106-176 (450)
195 3tvs_A Cryptochrome-1; circadi 45.6 28 0.00096 31.8 5.4 79 101-187 18-107 (538)
196 1w2w_B 5-methylthioribose-1-ph 45.4 7.4 0.00025 30.8 1.3 59 143-211 23-91 (191)
197 3g40_A Na-K-CL cotransporter; 44.9 27 0.00094 29.5 4.8 101 78-190 150-255 (294)
198 2yxb_A Coenzyme B12-dependent 44.2 46 0.0016 25.1 5.7 41 143-189 39-79 (161)
199 2der_A TRNA-specific 2-thiouri 43.9 1.1E+02 0.0039 26.3 8.9 98 83-189 17-142 (380)
200 2d1p_B TUSC, hypothetical UPF0 43.8 44 0.0015 23.6 5.3 42 83-126 1-42 (119)
201 2wsi_A FAD synthetase; transfe 43.7 1.4E+02 0.0048 24.8 9.8 93 84-190 54-168 (306)
202 2ejb_A Probable aromatic acid 42.4 36 0.0012 26.6 4.9 35 84-124 2-36 (189)
203 2hy5_B Intracellular sulfur ox 42.4 52 0.0018 24.1 5.6 43 82-126 4-46 (136)
204 3obi_A Formyltetrahydrofolate 42.2 47 0.0016 27.7 6.0 87 82-190 88-177 (288)
205 3nrb_A Formyltetrahydrofolate 41.5 20 0.00068 30.1 3.5 88 82-190 87-176 (287)
206 3bl5_A Queuosine biosynthesis 41.1 1.2E+02 0.004 23.1 12.6 92 84-190 4-124 (219)
207 2iks_A DNA-binding transcripti 40.7 1.3E+02 0.0045 23.6 11.0 17 171-187 92-108 (293)
208 3cu5_A Two component transcrip 40.6 89 0.003 21.6 7.9 19 170-188 40-58 (141)
209 1jx7_A Hypothetical protein YC 40.4 67 0.0023 21.9 5.8 42 84-126 2-44 (117)
210 2ywb_A GMP synthase [glutamine 40.1 2E+02 0.0069 25.6 12.0 91 84-188 210-317 (503)
211 3fy4_A 6-4 photolyase; DNA rep 39.9 57 0.0019 29.8 6.5 80 97-187 15-111 (537)
212 3kke_A LACI family transcripti 39.6 1.4E+02 0.0048 23.7 10.8 16 171-186 63-78 (303)
213 1owl_A Photolyase, deoxyribodi 39.5 74 0.0025 28.4 7.2 76 101-187 17-100 (484)
214 1nu0_A Hypothetical protein YQ 39.1 41 0.0014 24.9 4.6 23 166-188 40-62 (138)
215 1wv2_A Thiazole moeity, thiazo 39.0 1.7E+02 0.0057 24.3 11.1 104 97-210 82-192 (265)
216 2dpl_A GMP synthetase, GMP syn 38.9 1.4E+02 0.0049 24.7 8.5 92 84-189 21-130 (308)
217 3jy6_A Transcriptional regulat 38.7 1.4E+02 0.0047 23.3 9.0 77 98-189 19-95 (276)
218 1ny5_A Transcriptional regulat 38.6 97 0.0033 26.5 7.6 42 170-211 35-78 (387)
219 3dzd_A Transcriptional regulat 38.6 1.1E+02 0.0037 26.0 7.9 42 170-211 35-78 (368)
220 3m9w_A D-xylose-binding peripl 38.3 1.5E+02 0.0051 23.6 9.3 20 169-188 73-92 (313)
221 3huu_A Transcription regulator 37.0 1.1E+02 0.0037 24.3 7.4 20 169-188 96-115 (305)
222 2q5c_A NTRC family transcripti 36.6 1.5E+02 0.005 22.9 8.6 67 106-187 84-150 (196)
223 2j07_A Deoxyribodipyrimidine p 35.7 92 0.0032 27.2 7.1 76 100-187 15-95 (420)
224 3kcn_A Adenylate cyclase homol 35.7 1.1E+02 0.0038 21.3 8.5 9 180-188 49-57 (151)
225 3ce9_A Glycerol dehydrogenase; 35.6 77 0.0026 26.7 6.4 8 84-91 35-42 (354)
226 1qgu_B Protein (nitrogenase mo 35.1 2.2E+02 0.0076 25.5 9.7 87 82-190 359-445 (519)
227 2pju_A Propionate catabolism o 34.6 1.7E+02 0.006 23.2 8.6 21 106-126 96-116 (225)
228 3l6u_A ABC-type sugar transpor 34.5 1.6E+02 0.0056 22.9 11.3 19 170-188 80-98 (293)
229 3hcw_A Maltose operon transcri 34.3 1.3E+02 0.0046 23.7 7.5 76 99-188 25-100 (295)
230 3k4h_A Putative transcriptiona 33.9 1.3E+02 0.0044 23.5 7.2 78 98-189 25-102 (292)
231 3luf_A Two-component system re 33.7 1.5E+02 0.0051 23.4 7.6 77 118-211 124-205 (259)
232 2jk1_A HUPR, hydrogenase trans 33.7 1.1E+02 0.0039 20.8 8.0 19 170-188 35-53 (139)
233 1vl2_A Argininosuccinate synth 33.4 2.5E+02 0.0086 24.7 10.1 94 81-190 12-131 (421)
234 3egc_A Putative ribose operon 33.2 1.7E+02 0.0059 22.8 11.0 21 168-188 76-96 (291)
235 3l49_A ABC sugar (ribose) tran 32.4 1.4E+02 0.0046 23.4 7.1 79 98-189 17-96 (291)
236 3k32_A Uncharacterized protein 32.4 1.7E+02 0.0058 22.4 8.7 38 82-128 5-42 (203)
237 3rjz_A N-type ATP pyrophosphat 32.3 1.1E+02 0.0036 24.9 6.4 93 84-188 5-99 (237)
238 1dnp_A DNA photolyase; DNA rep 32.0 79 0.0027 28.1 6.1 79 101-187 15-103 (471)
239 3eqz_A Response regulator; str 32.0 69 0.0024 21.6 4.7 9 180-188 47-55 (135)
240 1m5w_A Pyridoxal phosphate bio 31.2 1.3E+02 0.0043 24.7 6.6 46 134-187 111-156 (243)
241 1vhx_A Putative holliday junct 31.0 28 0.00095 26.2 2.5 46 166-211 42-96 (150)
242 3gxq_A Putative regulator of t 30.8 33 0.0011 20.6 2.2 26 156-182 12-37 (54)
243 3nkl_A UDP-D-quinovosamine 4-d 30.7 47 0.0016 23.6 3.6 19 170-188 56-74 (141)
244 3kjx_A Transcriptional regulat 30.6 2.2E+02 0.0074 23.1 8.4 11 55-65 11-21 (344)
245 3ezx_A MMCP 1, monomethylamine 30.4 73 0.0025 25.2 5.0 37 143-185 113-149 (215)
246 1mio_B Nitrogenase molybdenum 30.3 2.8E+02 0.0095 24.3 12.5 84 82-189 311-395 (458)
247 3ia7_A CALG4; glycosysltransfe 30.2 2.3E+02 0.0077 23.2 9.1 102 83-211 4-130 (402)
248 3h5o_A Transcriptional regulat 29.8 2.2E+02 0.0075 23.0 10.0 17 171-187 110-126 (339)
249 3inp_A D-ribulose-phosphate 3- 29.8 1.2E+02 0.0043 24.5 6.4 44 138-187 181-224 (246)
250 3uug_A Multiple sugar-binding 29.7 2.1E+02 0.0072 22.7 8.2 21 168-188 73-93 (330)
251 1vr6_A Phospho-2-dehydro-3-deo 29.5 1.7E+02 0.0059 25.1 7.6 97 101-210 119-218 (350)
252 3g1w_A Sugar ABC transporter; 29.5 2.1E+02 0.007 22.5 7.8 92 84-189 5-96 (305)
253 3bbl_A Regulatory protein of L 29.2 2E+02 0.007 22.4 8.1 19 170-188 78-96 (287)
254 3e3m_A Transcriptional regulat 29.1 2.3E+02 0.008 23.0 10.9 68 138-211 88-155 (355)
255 2l69_A Rossmann 2X3 fold prote 28.9 1.5E+02 0.0052 20.8 6.4 70 86-177 54-123 (134)
256 3iwt_A 178AA long hypothetical 28.2 91 0.0031 23.5 5.1 40 141-185 44-87 (178)
257 1qv9_A F420-dependent methylen 27.9 88 0.003 25.9 5.0 44 166-211 51-97 (283)
258 1n8f_A DAHP synthetase; (beta/ 27.6 3E+02 0.01 23.7 10.5 112 84-210 52-185 (350)
259 3uhj_A Probable glycerol dehyd 27.6 88 0.003 27.1 5.4 87 84-188 53-139 (387)
260 3rot_A ABC sugar transporter, 27.5 2.2E+02 0.0076 22.3 7.7 21 169-189 76-96 (297)
261 4f2d_A L-arabinose isomerase; 27.2 1.5E+02 0.0052 26.7 7.1 42 169-211 61-103 (500)
262 3hly_A Flavodoxin-like domain; 26.9 1.9E+02 0.0063 21.2 7.0 11 180-190 83-93 (161)
263 2e0i_A 432AA long hypothetical 26.7 2E+02 0.0068 25.3 7.7 74 101-187 15-97 (440)
264 3qjg_A Epidermin biosynthesis 26.2 57 0.002 25.2 3.6 37 82-124 4-40 (175)
265 1sbz_A Probable aromatic acid 25.9 76 0.0026 25.0 4.3 36 84-124 1-36 (197)
266 2c5s_A THII, probable thiamine 25.7 3.2E+02 0.011 23.5 10.1 36 83-127 187-222 (413)
267 2p0y_A Hypothetical protein LP 25.3 60 0.002 28.0 3.8 42 167-211 178-226 (341)
268 4f3r_A Phosphopantetheine aden 25.2 2.2E+02 0.0074 21.3 9.0 20 171-190 76-95 (162)
269 1vs1_A 3-deoxy-7-phosphoheptul 24.8 1.5E+02 0.005 24.6 6.1 98 100-210 50-150 (276)
270 2ppv_A Uncharacterized protein 24.7 73 0.0025 27.3 4.3 43 166-211 166-215 (332)
271 3tqk_A Phospho-2-dehydro-3-deo 24.7 3.4E+02 0.011 23.4 10.1 112 84-210 49-182 (346)
272 1xky_A Dihydrodipicolinate syn 24.4 3E+02 0.01 22.7 8.2 46 166-211 92-144 (301)
273 1uf3_A Hypothetical protein TT 24.3 1.1E+02 0.0036 23.0 4.9 6 184-189 69-74 (228)
274 3tqi_A GMP synthase [glutamine 24.2 2E+02 0.0067 25.9 7.3 89 84-188 231-339 (527)
275 2f6u_A GGGPS, (S)-3-O-geranylg 24.1 1.1E+02 0.0037 24.8 5.0 40 169-212 23-68 (234)
276 2vyc_A Biodegradative arginine 24.0 2.3E+02 0.0077 26.7 7.9 64 139-211 21-91 (755)
277 3kbq_A Protein TA0487; structu 23.5 2.1E+02 0.0071 21.9 6.4 56 140-200 26-84 (172)
278 2nwr_A 2-dehydro-3-deoxyphosph 23.5 1.6E+02 0.0056 24.2 6.1 99 99-210 14-123 (267)
279 8abp_A L-arabinose-binding pro 23.3 2.2E+02 0.0075 22.3 6.8 78 98-188 14-91 (306)
280 2dfa_A Hypothetical UPF0271 pr 23.2 3.1E+02 0.011 22.5 8.5 116 82-209 27-161 (250)
281 2rgy_A Transcriptional regulat 23.2 2.7E+02 0.0092 21.7 8.8 80 98-188 20-99 (290)
282 3qze_A DHDPS, dihydrodipicolin 23.1 3E+02 0.01 22.8 7.9 43 169-211 108-155 (314)
283 1v6t_A Hypothetical UPF0271 pr 23.1 3.2E+02 0.011 22.5 9.9 114 82-209 27-161 (255)
284 3na8_A Putative dihydrodipicol 22.8 2.3E+02 0.008 23.5 7.1 44 169-212 109-157 (315)
285 2amj_A Modulator of drug activ 22.7 2.3E+02 0.008 21.6 6.7 20 168-189 61-80 (204)
286 1qo0_D AMIR; binding protein, 22.7 1.4E+02 0.0049 21.9 5.3 11 178-188 51-61 (196)
287 3o1i_D Periplasmic protein TOR 22.6 2.7E+02 0.0094 21.6 7.3 17 171-187 55-71 (304)
288 2vk2_A YTFQ, ABC transporter p 22.5 2.8E+02 0.0097 21.8 8.2 19 170-188 74-92 (306)
289 3tb6_A Arabinose metabolism tr 22.5 2.7E+02 0.0093 21.5 9.6 21 168-188 88-108 (298)
290 1ii7_A MRE11 nuclease; RAD50, 22.4 1.6E+02 0.0055 24.3 6.0 11 179-189 75-86 (333)
291 2pjk_A 178AA long hypothetical 22.3 1.5E+02 0.0051 22.6 5.4 40 141-185 44-87 (178)
292 2avd_A Catechol-O-methyltransf 22.3 2.5E+02 0.0084 21.1 6.7 44 139-187 107-153 (229)
293 3g85_A Transcriptional regulat 22.3 1.7E+02 0.0059 22.8 6.0 9 179-187 91-99 (289)
294 2v9d_A YAGE; dihydrodipicolini 22.2 2.8E+02 0.0095 23.4 7.5 46 166-211 111-163 (343)
295 2q7x_A UPF0052 protein SP_1565 21.9 64 0.0022 27.5 3.4 42 167-211 174-222 (326)
296 2fep_A Catabolite control prot 21.8 2.9E+02 0.0099 21.6 9.2 77 98-188 28-104 (289)
297 3nbk_A Phosphopantetheine aden 21.7 2.7E+02 0.0094 21.3 9.7 80 97-190 33-112 (177)
298 3d8u_A PURR transcriptional re 21.3 2.4E+02 0.0081 21.6 6.6 77 98-188 15-91 (275)
299 1xw8_A UPF0271 protein YBGL; N 21.1 3.4E+02 0.012 22.2 9.8 104 97-209 32-156 (252)
300 3fs2_A 2-dehydro-3-deoxyphosph 21.0 2.2E+02 0.0075 23.9 6.4 100 99-210 52-160 (298)
301 3tak_A DHDPS, dihydrodipicolin 20.7 3E+02 0.01 22.4 7.3 42 170-211 87-133 (291)
302 2x5e_A UPF0271 protein PA4511; 20.5 3.6E+02 0.012 22.1 8.9 118 81-209 32-170 (252)
303 2o2z_A Hypothetical protein; s 20.4 77 0.0026 27.1 3.5 43 166-211 167-216 (323)
304 2dri_A D-ribose-binding protei 20.4 3E+02 0.01 21.2 7.1 19 170-188 73-91 (271)
305 3q0i_A Methionyl-tRNA formyltr 20.2 2.5E+02 0.0086 23.5 6.7 42 142-190 55-96 (318)
306 3bil_A Probable LACI-family tr 20.2 3.5E+02 0.012 21.9 9.4 13 56-68 10-22 (348)
No 1
>3s3t_A Nucleotide-binding protein, universal stress PROT family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ATP; 1.90A {Lactobacillus plantarum} SCOP: c.26.2.0
Probab=99.87 E-value=2.9e-21 Score=147.93 Aligned_cols=122 Identities=15% Similarity=0.338 Sum_probs=98.4
Q ss_pred cCCCcEEEEeeCCCCCCCHHHHHHHHHHHHHHhhcCCEEEEEEEeCCCCCC-h--------------hhHHHHHHHHHHH
Q 028129 81 TNFKHLLLPITDQNPYLSEGTRQAAATTAALAKKYGADITVVVIDERQKES-L--------------PEHENRLSSIRWH 145 (213)
Q Consensus 81 ~~~k~ILV~vD~~~~~~S~~s~~Al~~A~~LA~~~~a~L~ll~V~~~~~~~-~--------------~~~~~~l~~~~~~ 145 (213)
.||++||||+| +|+.+..++++|..+|+..+++|+++|+.+..... . .+.++.++.+.+.
T Consensus 3 ~~~~~ILv~~D-----~s~~s~~al~~A~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 77 (146)
T 3s3t_A 3 ARYTNILVPVD-----SSDAAQAAFTEAVNIAQRHQANLTALYVVDDSAYHTPALDPVLSELLDAEAAHAKDAMRQRQQF 77 (146)
T ss_dssp CCCCEEEEECC-----SSHHHHHHHHHHHHHHHHHTCEEEEEEEEECCCCCCGGGHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccceEEEEcC-----CCHHHHHHHHHHHHHHHhcCCEEEEEEEecCccccccccccccHHHHHHHHHHHHHHHHHHHHH
Confidence 57999999999 89999999999999999999999999886543221 1 0122334444455
Q ss_pred HHhCCC-CceeEEEEEcccCCchHHHHHH-HHHHcCCcEEEEcccCCCC-----CCchHHHHHhcCCCcEEEEc
Q 028129 146 LSEGGF-QEFRLLERLGEGSSKPTAIIGD-VADELNLDLVIISMEAIHS-----KHVDANLLAEFIPCPVLLLP 212 (213)
Q Consensus 146 l~~~g~-~~~~v~~~v~~G~~~p~~~Il~-~A~e~~aDLIVmG~~g~~~-----~Gs~~~~vl~~a~cPVLvVp 212 (213)
+.+.|+ + ++..+..|+ +.++|++ +|++.++||||||+++++. .|++...++++++||||+||
T Consensus 78 ~~~~g~~~---~~~~~~~g~--~~~~I~~~~a~~~~~dliV~G~~~~~~~~~~~~Gs~~~~vl~~~~~pVlvV~ 146 (146)
T 3s3t_A 78 VATTSAPN---LKTEISYGI--PKHTIEDYAKQHPEIDLIVLGATGTNSPHRVAVGSTTSYVVDHAPCNVIVIR 146 (146)
T ss_dssp HTTSSCCC---CEEEEEEEC--HHHHHHHHHHHSTTCCEEEEESCCSSCTTTCSSCHHHHHHHHHCSSEEEEEC
T ss_pred HHhcCCcc---eEEEEecCC--hHHHHHHHHHhhcCCCEEEECCCCCCCcceEEEcchHHHHhccCCCCEEEeC
Confidence 556677 5 666777896 9999999 9999999999999988632 28899999999999999997
No 2
>3hgm_A Universal stress protein TEAD; rossman fold, signaling protein; HET: ATP; 1.90A {Halomonas elongata} SCOP: c.26.2.0
Probab=99.86 E-value=5.5e-21 Score=146.32 Aligned_cols=123 Identities=20% Similarity=0.275 Sum_probs=99.5
Q ss_pred CCCcEEEEeeCCCCCCCHHHHHHHHHHHHHHhhcCCEEEEEEEeCCCC----------CCh---------hhHHHHHHHH
Q 028129 82 NFKHLLLPITDQNPYLSEGTRQAAATTAALAKKYGADITVVVIDERQK----------ESL---------PEHENRLSSI 142 (213)
Q Consensus 82 ~~k~ILV~vD~~~~~~S~~s~~Al~~A~~LA~~~~a~L~ll~V~~~~~----------~~~---------~~~~~~l~~~ 142 (213)
||++||||+| +|+.+..++++|..+|+..+++|+++|+.+... ... .+.++.++.+
T Consensus 1 M~~~ILv~vD-----~s~~s~~al~~A~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 75 (147)
T 3hgm_A 1 MFNRIMVPVD-----GSKGAVKALEKGVGLQQLTGAELYILCVFKHHSLLEASLSMARPEQLDIPDDALKDYATEIAVQA 75 (147)
T ss_dssp CCSEEEEECC-----SBHHHHHHHHHHHHHHHHHCCEEEEEEEECCHHHHHHTBSSCCCGGGCCCTTHHHHHHHHHHHHH
T ss_pred CCceEEEEeC-----CCHHHHHHHHHHHHHHHhcCCEEEEEEEecCcccccccccccChhhhhhHHHHHHHHHHHHHHHH
Confidence 6999999999 899999999999999999999999998876421 000 1334556666
Q ss_pred HHHHHhCCCCceeEEEEEcccCCchHHHHHHHHHHcCCcEEEEcccCCCC-----CCchHHHHHhcCCCcEEEE
Q 028129 143 RWHLSEGGFQEFRLLERLGEGSSKPTAIIGDVADELNLDLVIISMEAIHS-----KHVDANLLAEFIPCPVLLL 211 (213)
Q Consensus 143 ~~~l~~~g~~~~~v~~~v~~G~~~p~~~Il~~A~e~~aDLIVmG~~g~~~-----~Gs~~~~vl~~a~cPVLvV 211 (213)
.+.+.+.|++-..+...+..|+ +.++|+++|+++++||||||+++++. .|++...++++++||||+|
T Consensus 76 ~~~~~~~g~~~~~~~~~~~~g~--~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~~Gs~~~~vl~~~~~pVlvV 147 (147)
T 3hgm_A 76 KTRATELGVPADKVRAFVKGGR--PSRTIVRFARKRECDLVVIGAQGTNGDKSLLLGSVAQRVAGSAHCPVLVV 147 (147)
T ss_dssp HHHHHHTTCCGGGEEEEEEESC--HHHHHHHHHHHTTCSEEEECSSCTTCCSCCCCCHHHHHHHHHCSSCEEEC
T ss_pred HHHHHhcCCCccceEEEEecCC--HHHHHHHHHHHhCCCEEEEeCCCCccccceeeccHHHHHHhhCCCCEEEC
Confidence 6667777877111266777896 99999999999999999999998632 2889999999999999986
No 3
>3dlo_A Universal stress protein; unknown function, structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics; HET: MSE; 1.97A {Archaeoglobus fulgidus} PDB: 3qtb_A*
Probab=99.86 E-value=1.5e-20 Score=147.20 Aligned_cols=126 Identities=16% Similarity=0.059 Sum_probs=100.7
Q ss_pred hhcCCCcEEEEeeCCCCCC-CHHHHHHHHHHHHHHhhcCCEEEEEEEeCCCCCCh----hhHHHHHHHHHHHHHhCCCCc
Q 028129 79 AFTNFKHLLLPITDQNPYL-SEGTRQAAATTAALAKKYGADITVVVIDERQKESL----PEHENRLSSIRWHLSEGGFQE 153 (213)
Q Consensus 79 ~~~~~k~ILV~vD~~~~~~-S~~s~~Al~~A~~LA~~~~a~L~ll~V~~~~~~~~----~~~~~~l~~~~~~l~~~g~~~ 153 (213)
+..||++||||+| + |+.+..++++|..+|+..+++|+++++.+...... .+.++.++++.+.+.+.|++
T Consensus 20 ~~mm~~~ILv~vD-----~~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~- 93 (155)
T 3dlo_A 20 QGMIYMPIVVAVD-----KKSDRAERVLRFAAEEARLRGVPVYVVHSLPGGGRTKDEDIIEAKETLSWAVSIIRKEGAE- 93 (155)
T ss_dssp --CCCCCEEEECC-----SSSHHHHHHHHHHHHHHHHHTCCEEEEEEECCSTTSCHHHHHHHHHHHHHHHHHHHHTTCC-
T ss_pred cccccCeEEEEEC-----CCCHHHHHHHHHHHHHHHhcCCEEEEEEEEcCCCcccHHHHHHHHHHHHHHHHHHHhcCCC-
Confidence 4467999999999 9 99999999999999999999999998876543221 23445566666677777876
Q ss_pred eeEEEEEcccCCchHHHHHHHHHHcCCcEEEEcccCCCC-----CCchHHHHHhcCCCcEEEEc
Q 028129 154 FRLLERLGEGSSKPTAIIGDVADELNLDLVIISMEAIHS-----KHVDANLLAEFIPCPVLLLP 212 (213)
Q Consensus 154 ~~v~~~v~~G~~~p~~~Il~~A~e~~aDLIVmG~~g~~~-----~Gs~~~~vl~~a~cPVLvVp 212 (213)
+.+...+..|+ |.++|+++|+++++||||||+++++. .|++...++++++||||+||
T Consensus 94 ~~~~~~v~~G~--~~~~I~~~a~~~~~DLIV~G~~g~~~~~~~~lGSv~~~vl~~a~~PVLvVr 155 (155)
T 3dlo_A 94 GEEHLLVRGKE--PPDDIVDFADEVDAIAIVIGIRKRSPTGKLIFGSVARDVILKANKPVICIK 155 (155)
T ss_dssp EEEEEEESSSC--HHHHHHHHHHHTTCSEEEEECCEECTTSCEECCHHHHHHHHHCSSCEEEEC
T ss_pred ceEEEEecCCC--HHHHHHHHHHHcCCCEEEECCCCCCCCCCEEeccHHHHHHHhCCCCEEEeC
Confidence 22233456686 99999999999999999999987632 28899999999999999997
No 4
>1mjh_A Protein (ATP-binding domain of protein MJ0577); hypothetical protein, structural genomics, functional assignment; HET: ATP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.26.2.4
Probab=99.85 E-value=2.2e-20 Score=145.77 Aligned_cols=121 Identities=19% Similarity=0.307 Sum_probs=96.0
Q ss_pred CCCcEEEEeeCCCCCCCHHHHHHHHHHHHHHhhcCCEEEEEEEeCCC-----C---C---C--h-h--------------
Q 028129 82 NFKHLLLPITDQNPYLSEGTRQAAATTAALAKKYGADITVVVIDERQ-----K---E---S--L-P-------------- 133 (213)
Q Consensus 82 ~~k~ILV~vD~~~~~~S~~s~~Al~~A~~LA~~~~a~L~ll~V~~~~-----~---~---~--~-~-------------- 133 (213)
+|++||||+| +|+.+..|+++|..+|+..+++|+++|+.+.. . . . . +
T Consensus 4 ~~~~ILv~vD-----~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (162)
T 1mjh_A 4 MYKKILYPTD-----FSETAEIALKHVKAFKTLKAEEVILLHVIDEREIKKRDIFSLLLGVAGLNKSVEEFENELKNKLT 78 (162)
T ss_dssp CCCEEEEECC-----SCHHHHHHHHHHHHTCCSSCCEEEEEEEEEGGGTC-----------------CHHHHHHHHHHHH
T ss_pred ccceEEEEeC-----CCHHHHHHHHHHHHHHhhcCCeEEEEEEecCccccccccccccccccccccchhhhHHHHHHHHH
Confidence 7999999999 89999999999999999999999999775432 1 1 0 1 1
Q ss_pred -hHHHHHHHHHHHHHhCCCCceeEEEEEcccCCchHHHHHHHHHHcCCcEEEEcccCCCC-----CCchHHHHHhcCCCc
Q 028129 134 -EHENRLSSIRWHLSEGGFQEFRLLERLGEGSSKPTAIIGDVADELNLDLVIISMEAIHS-----KHVDANLLAEFIPCP 207 (213)
Q Consensus 134 -~~~~~l~~~~~~l~~~g~~~~~v~~~v~~G~~~p~~~Il~~A~e~~aDLIVmG~~g~~~-----~Gs~~~~vl~~a~cP 207 (213)
+.++.++++.+.+...|++ +...+..|+ +.++|+++|+++++||||||++|++. .|++...++++++||
T Consensus 79 ~~~~~~l~~~~~~~~~~g~~---~~~~v~~G~--~~~~I~~~a~~~~~dlIV~G~~g~~~~~~~~~GSv~~~vl~~~~~p 153 (162)
T 1mjh_A 79 EEAKNKMENIKKELEDVGFK---VKDIIVVGI--PHEEIVKIAEDEGVDIIIMGSHGKTNLKEILLGSVTENVIKKSNKP 153 (162)
T ss_dssp HHHHHHHHHHHHHHHHTTCE---EEEEEEEEC--HHHHHHHHHHHTTCSEEEEESCCSSCCTTCSSCHHHHHHHHHCCSC
T ss_pred HHHHHHHHHHHHHHHHcCCc---eEEEEcCCC--HHHHHHHHHHHcCCCEEEEcCCCCCCccceEecchHHHHHHhCCCC
Confidence 1122334444455566776 766777896 99999999999999999999998632 288999999999999
Q ss_pred EEEEc
Q 028129 208 VLLLP 212 (213)
Q Consensus 208 VLvVp 212 (213)
||+||
T Consensus 154 Vlvv~ 158 (162)
T 1mjh_A 154 VLVVK 158 (162)
T ss_dssp EEEEC
T ss_pred EEEEe
Confidence 99998
No 5
>3fg9_A Protein of universal stress protein USPA family; APC60691, nucleotide- binding, lactobacillus plantarum WCFS1, structural genomics PSI-2; 1.47A {Lactobacillus plantarum}
Probab=99.84 E-value=3.4e-20 Score=144.06 Aligned_cols=127 Identities=16% Similarity=0.212 Sum_probs=98.8
Q ss_pred hhcCCCcEEEEeeCCCCCCCHHHHHHHHHHHHHHhhcCCEEEEEEEeCCCCCC----h---------hhHHHHHHHHHHH
Q 028129 79 AFTNFKHLLLPITDQNPYLSEGTRQAAATTAALAKKYGADITVVVIDERQKES----L---------PEHENRLSSIRWH 145 (213)
Q Consensus 79 ~~~~~k~ILV~vD~~~~~~S~~s~~Al~~A~~LA~~~~a~L~ll~V~~~~~~~----~---------~~~~~~l~~~~~~ 145 (213)
.+.+|++||||+|. ++|+.+..++++|..+|+..+++|+++|+.+..... . .+.++.++++.+.
T Consensus 11 ~~~~~~~ILv~vD~---~~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 87 (156)
T 3fg9_A 11 EPLVYRRILLTVDE---DDNTSSERAFRYATTLAHDYDVPLGICSVLESEDINIFDSLTPSKIQAKRKHVEDVVAEYVQL 87 (156)
T ss_dssp SCCCCC-EEEECCS---CCCHHHHHHHHHHHHHHHHHTCCEEEEEEECCCCTTCCCSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccCceEEEEECC---CCCHHHHHHHHHHHHHHHhcCCEEEEEEEEeCCCccccccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 45679999999992 149999999999999999999999999887654211 1 1223445555555
Q ss_pred HHhCCCCceeEEEEEcc-cCCchHHHHHHH-HHHcCCcEEEEcccCCCC----CCchHHHHHhcCCCcEEEEc
Q 028129 146 LSEGGFQEFRLLERLGE-GSSKPTAIIGDV-ADELNLDLVIISMEAIHS----KHVDANLLAEFIPCPVLLLP 212 (213)
Q Consensus 146 l~~~g~~~~~v~~~v~~-G~~~p~~~Il~~-A~e~~aDLIVmG~~g~~~----~Gs~~~~vl~~a~cPVLvVp 212 (213)
+.+.|+.. +...+.. |+ +.++|+++ |+++++||||||++|++. -|++...++++++||||+||
T Consensus 88 ~~~~g~~~--~~~~v~~~g~--~~~~I~~~~a~~~~~DlIV~G~~g~~~~~~~~Gs~~~~vl~~a~~PVlvV~ 156 (156)
T 3fg9_A 88 AEQRGVNQ--VEPLVYEGGD--VDDVILEQVIPEFKPDLLVTGADTEFPHSKIAGAIGPRLARKAPISVIVVR 156 (156)
T ss_dssp HHHHTCSS--EEEEEEECSC--HHHHHHHTHHHHHCCSEEEEETTCCCTTSSSCSCHHHHHHHHCSSEEEEEC
T ss_pred HHHcCCCc--eEEEEEeCCC--HHHHHHHHHHHhcCCCEEEECCCCCCccceeecchHHHHHHhCCCCEEEeC
Confidence 66667732 5666677 86 99999999 999999999999998632 28899999999999999997
No 6
>3idf_A USP-like protein; universal, stress, PSI, MCSG, structural genomics, midwest center for structural genomics structure initiative; 2.00A {Wolinella succinogenes}
Probab=99.84 E-value=3.9e-20 Score=140.54 Aligned_cols=118 Identities=19% Similarity=0.233 Sum_probs=95.4
Q ss_pred CCcEEEEeeCCCCCCCHHHHHHHHHHHHHH-hhcCCEEEEEEEeCCCCCCh---------------hhHHHHHHHHHHHH
Q 028129 83 FKHLLLPITDQNPYLSEGTRQAAATTAALA-KKYGADITVVVIDERQKESL---------------PEHENRLSSIRWHL 146 (213)
Q Consensus 83 ~k~ILV~vD~~~~~~S~~s~~Al~~A~~LA-~~~~a~L~ll~V~~~~~~~~---------------~~~~~~l~~~~~~l 146 (213)
|++||||+| +|+.+..++++|..+| +..+++|+++|+.+...... .+.++.++++.+.+
T Consensus 1 ~~~ILv~~D-----~s~~s~~al~~a~~la~~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 75 (138)
T 3idf_A 1 MKKLLFAID-----DTEACERAAQYILDMFGKDADCTLTLIHVKPEFMLYGEAVLAAYDEIEMKEEEKAKLLTQKFSTFF 75 (138)
T ss_dssp CEEEEEECC-----SSHHHHHHHHHHHHHHTTCTTEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CceEEEEeC-----CCHHHHHHHHHHHHHhccCCCCEEEEEEEecCCCcccccccCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 689999999 8999999999999999 99999999998877654321 11123344444555
Q ss_pred HhCCCCceeEEEEEcccCCchHHHHHHHHHHcCCcEEEEcccCCCCC----CchHHHHHhcCCCcEEEEc
Q 028129 147 SEGGFQEFRLLERLGEGSSKPTAIIGDVADELNLDLVIISMEAIHSK----HVDANLLAEFIPCPVLLLP 212 (213)
Q Consensus 147 ~~~g~~~~~v~~~v~~G~~~p~~~Il~~A~e~~aDLIVmG~~g~~~~----Gs~~~~vl~~a~cPVLvVp 212 (213)
.+.|++ ++..+..|+ +.++|+++|+ ++||||||+++++.- |++...++++++||||+||
T Consensus 76 ~~~g~~---~~~~v~~g~--~~~~I~~~a~--~~dliV~G~~~~~~~~~~~Gs~~~~vl~~~~~pVlvv~ 138 (138)
T 3idf_A 76 TEKGIN---PFVVIKEGE--PVEMVLEEAK--DYNLLIIGSSENSFLNKIFASHQDDFIQKAPIPVLIVK 138 (138)
T ss_dssp HTTTCC---CEEEEEESC--HHHHHHHHHT--TCSEEEEECCTTSTTSSCCCCTTCHHHHHCSSCEEEEC
T ss_pred HHCCCC---eEEEEecCC--hHHHHHHHHh--cCCEEEEeCCCcchHHHHhCcHHHHHHhcCCCCEEEeC
Confidence 667777 777778896 9999999999 999999999876211 8888999999999999997
No 7
>2dum_A Hypothetical protein PH0823; conserved hypothetical protein, putative universal protein A structural genomics, NPPSFA; 2.75A {Pyrococcus horikoshii}
Probab=99.84 E-value=3.2e-20 Score=146.14 Aligned_cols=122 Identities=19% Similarity=0.175 Sum_probs=96.4
Q ss_pred cCCCcEEEEeeCCCCCCCHHHHHHHHHHHHHHhhcCCEEEEEEEeCCCCC-------------------Ch-----hhHH
Q 028129 81 TNFKHLLLPITDQNPYLSEGTRQAAATTAALAKKYGADITVVVIDERQKE-------------------SL-----PEHE 136 (213)
Q Consensus 81 ~~~k~ILV~vD~~~~~~S~~s~~Al~~A~~LA~~~~a~L~ll~V~~~~~~-------------------~~-----~~~~ 136 (213)
.||++||||+| +|+.+..++++|..+|+..+++|+++|+.+.... .. .+.+
T Consensus 3 ~m~~~ILv~vD-----~s~~s~~al~~A~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (170)
T 2dum_A 3 FMFRKVLFPTD-----FSEGAYRAVEVFEKRNKMEVGEVILLHVIDEGTLEELMDGYSFFYDNAEIELKDIKEKLKEEAS 77 (170)
T ss_dssp -CCSEEEEECC-----SSHHHHHHHHHHHHHCCSCCSEEEEEEEEETTGGGCCC------------CCTTSHHHHHHHHH
T ss_pred cccceEEEEec-----CCHHHHHHHHHHHHHHHhcCCEEEEEEEecCccccccccccccccccccccHHHHHHHHHHHHH
Confidence 47999999999 8999999999999999999999999977543210 00 1123
Q ss_pred HHHHHHHHHHHhCCCCceeEEE--EEcccCCchHHHHHHHHHHcCCcEEEEcccCCCC-----CCchHHHHHhcCCCcEE
Q 028129 137 NRLSSIRWHLSEGGFQEFRLLE--RLGEGSSKPTAIIGDVADELNLDLVIISMEAIHS-----KHVDANLLAEFIPCPVL 209 (213)
Q Consensus 137 ~~l~~~~~~l~~~g~~~~~v~~--~v~~G~~~p~~~Il~~A~e~~aDLIVmG~~g~~~-----~Gs~~~~vl~~a~cPVL 209 (213)
+.++++.+.+...|++ ++. .+..|+ +.++|+++|+++++||||||+++++. .|++...++++++||||
T Consensus 78 ~~l~~~~~~~~~~g~~---~~~~~~~~~g~--~~~~I~~~a~~~~~DlIV~G~~g~~~~~~~~~Gsv~~~vl~~~~~PVl 152 (170)
T 2dum_A 78 RKLQEKAEEVKRAFRA---KNVRTIIRFGI--PWDEIVKVAEEENVSLIILPSRGKLSLSHEFLGSTVMRVLRKTKKPVL 152 (170)
T ss_dssp HHHHHHHHHHHHHTTC---SEEEEEEEEEC--HHHHHHHHHHHTTCSEEEEESCCCCC--TTCCCHHHHHHHHHCSSCEE
T ss_pred HHHHHHHHHHHHcCCc---eeeeeEEecCC--hHHHHHHHHHHcCCCEEEECCCCCCccccceechHHHHHHHhCCCCEE
Confidence 3444554555556776 555 667786 99999999999999999999998632 28889999999999999
Q ss_pred EEc
Q 028129 210 LLP 212 (213)
Q Consensus 210 vVp 212 (213)
+||
T Consensus 153 vv~ 155 (170)
T 2dum_A 153 IIK 155 (170)
T ss_dssp EEC
T ss_pred EEc
Confidence 998
No 8
>2z08_A Universal stress protein family; uncharacterized conserved protein, structural genomics, unknown function, NPPSFA; HET: ATP; 1.55A {Thermus thermophilus} SCOP: c.26.2.4 PDB: 1wjg_A* 2z09_A* 2z3v_A
Probab=99.84 E-value=4.3e-20 Score=140.51 Aligned_cols=121 Identities=27% Similarity=0.300 Sum_probs=90.1
Q ss_pred CCCcEEEEeeCCCCCCCHHHHHHHHHHHHHHhhcCCEEEEEEEeCCCCCCh----h-----hHHHHHHHH-HHHHHhCCC
Q 028129 82 NFKHLLLPITDQNPYLSEGTRQAAATTAALAKKYGADITVVVIDERQKESL----P-----EHENRLSSI-RWHLSEGGF 151 (213)
Q Consensus 82 ~~k~ILV~vD~~~~~~S~~s~~Al~~A~~LA~~~~a~L~ll~V~~~~~~~~----~-----~~~~~l~~~-~~~l~~~g~ 151 (213)
||++||||+| +|+.+..++++|..+|+..+++|+++++.++....+ + +.++..++. .+.....|+
T Consensus 1 m~~~ILv~~D-----~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 75 (137)
T 2z08_A 1 MFKTILLAYD-----GSEHARRAAEVAKAEAEAHGARLIVVHAYEPVPDYLGEPFFEEALRRRLERAEGVLEEARALTGV 75 (137)
T ss_dssp CCSEEEEECC-----SSHHHHHHHHHHHHHHHHHTCEEEEEEEECC--------------CHHHHHHHHHHHHHHHHHCC
T ss_pred CcceEEEEeC-----CCHHHHHHHHHHHHHHhhcCCEEEEEEEecCCCccccccchHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 6899999999 899999999999999999999999998876421111 0 011111111 111122466
Q ss_pred -CceeEEEEEcccCCchHHHHHHHHHHcCCcEEEEcccCCCC-----CCchHHHHHhcCCCcEEEEc
Q 028129 152 -QEFRLLERLGEGSSKPTAIIGDVADELNLDLVIISMEAIHS-----KHVDANLLAEFIPCPVLLLP 212 (213)
Q Consensus 152 -~~~~v~~~v~~G~~~p~~~Il~~A~e~~aDLIVmG~~g~~~-----~Gs~~~~vl~~a~cPVLvVp 212 (213)
+ ++..+..|+ +.++|+++|+++++||||||+++++. .|++...++++++||||+||
T Consensus 76 ~~---~~~~~~~g~--~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~~Gs~~~~vl~~~~~pVlvv~ 137 (137)
T 2z08_A 76 PK---EDALLLEGV--PAEAILQAARAEKADLIVMGTRGLGALGSLFLGSQSQRVVAEAPCPVLLVR 137 (137)
T ss_dssp CG---GGEEEEESS--HHHHHHHHHHHTTCSEEEEESSCTTCCSCSSSCHHHHHHHHHCSSCEEEEC
T ss_pred Cc---cEEEEEecC--HHHHHHHHHHHcCCCEEEECCCCCchhhhhhhccHHHHHHhcCCCCEEEeC
Confidence 4 444456786 99999999999999999999998632 28899999999999999997
No 9
>1tq8_A Hypothetical protein RV1636; MTCY01B2.28, structural target, NYSGXRC, PSI, protein structure initiative; 2.40A {Mycobacterium tuberculosis} SCOP: c.26.2.4
Probab=99.83 E-value=9.8e-20 Score=143.67 Aligned_cols=126 Identities=15% Similarity=0.210 Sum_probs=97.4
Q ss_pred hhhcCCCcEEEEeeCCCCCCCHHHHHHHHHHHHHHhhcCCEEEEE--EEeCCCCC--C-------h-----hhHHHHHHH
Q 028129 78 EAFTNFKHLLLPITDQNPYLSEGTRQAAATTAALAKKYGADITVV--VIDERQKE--S-------L-----PEHENRLSS 141 (213)
Q Consensus 78 ~~~~~~k~ILV~vD~~~~~~S~~s~~Al~~A~~LA~~~~a~L~ll--~V~~~~~~--~-------~-----~~~~~~l~~ 141 (213)
..+.++++||||+| +|+.+..|+++|.++|+ .+++|+++ ++.+.... . + .+.++.+++
T Consensus 12 ~~~~~~~~ILv~vD-----~s~~s~~al~~A~~lA~-~~a~l~ll~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 85 (163)
T 1tq8_A 12 MSLSAYKTVVVGTD-----GSDSSMRAVDRAAQIAG-ADAKLIIASAYLPQHEDARAADILKDESYKVTGTAPIYEILHD 85 (163)
T ss_dssp -CCCCCCEEEEECC-----SSHHHHHHHHHHHHHHT-TTSEEEEEEECCC--------------------CCTHHHHHHH
T ss_pred cccccCCEEEEEcC-----CCHHHHHHHHHHHHHhC-CCCEEEEEEeeeccCcccccccccccHHHHHHHHHHHHHHHHH
Confidence 34577999999999 89999999999999999 99999999 77543211 0 0 123455666
Q ss_pred HHHHHHhCCCCceeEEEEEcccCCchHHHHHHHHHHcCCcEEEEcccCCCC-----CCchHHHHHhcCCCcEEEEcC
Q 028129 142 IRWHLSEGGFQEFRLLERLGEGSSKPTAIIGDVADELNLDLVIISMEAIHS-----KHVDANLLAEFIPCPVLLLPL 213 (213)
Q Consensus 142 ~~~~l~~~g~~~~~v~~~v~~G~~~p~~~Il~~A~e~~aDLIVmG~~g~~~-----~Gs~~~~vl~~a~cPVLvVp~ 213 (213)
+.+.+.+.|++. +...+..|+ |.++|+++|++.++||||||++++.. .|++...++++++||||+||.
T Consensus 86 ~~~~~~~~gv~~--v~~~v~~G~--~~~~I~~~a~~~~~DLIV~G~~g~~~~~~~~lGSva~~vl~~a~~PVlvV~~ 158 (163)
T 1tq8_A 86 AKERAHNAGAKN--VEERPIVGA--PVDALVNLADEEKADLLVVGNVGLSTIAGRLLGSVPANVSRRAKVDVLIVHT 158 (163)
T ss_dssp HHHHHHTTTCCE--EEEEEECSS--HHHHHHHHHHHTTCSEEEEECCCCCSHHHHHTBBHHHHHHHHTTCEEEEECC
T ss_pred HHHHHHHcCCCe--EEEEEecCC--HHHHHHHHHHhcCCCEEEECCCCCCcccceeeccHHHHHHHhCCCCEEEEeC
Confidence 666666666652 455567786 99999999999999999999998732 278888899999999999983
No 10
>3tnj_A Universal stress protein (USP); structural genomics, PSI-biology, midwest center for structu genomics, MCSG, chaperone; HET: AMP; 2.00A {Nitrosomonas europaea} PDB: 2pfs_A*
Probab=99.82 E-value=1e-19 Score=140.00 Aligned_cols=125 Identities=20% Similarity=0.296 Sum_probs=89.4
Q ss_pred hcCCCcEEEEeeCCCCCCCHHHHHHHHHHHHHHhhcCCEEEEEEEeCCCCC------C--------h-hhHHH-HHHHHH
Q 028129 80 FTNFKHLLLPITDQNPYLSEGTRQAAATTAALAKKYGADITVVVIDERQKE------S--------L-PEHEN-RLSSIR 143 (213)
Q Consensus 80 ~~~~k~ILV~vD~~~~~~S~~s~~Al~~A~~LA~~~~a~L~ll~V~~~~~~------~--------~-~~~~~-~l~~~~ 143 (213)
|.+|++||||+| +|+.+..++++|..+|+..+++|+++|+.+.... . . .+..+ ..+.+.
T Consensus 3 m~~~~~ILv~vD-----~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 77 (150)
T 3tnj_A 3 MSVYHHILLAVD-----FSSEDSQVVQKVRNLASQIGARLSLIHVLDNIPMPDTPYGTAIPLDTETTYDAMLDVEKQKLS 77 (150)
T ss_dssp -CCCSEEEEECC-----CSTTHHHHHHHHHHHHHHHTCEEEEEEEEC--------CTTCCCSSSCCCHHHHHHHHHHHHH
T ss_pred CCccceEEEEeC-----CCHHHHHHHHHHHHHHhhcCCEEEEEEEEcCccccccccccccCcCHHHHHHHHHHHHHHHHH
Confidence 678999999999 8999999999999999999999999988654211 0 0 11111 111122
Q ss_pred HHHHhCCCCceeEEEEEcccCCchHHHHHHHHHHcCCcEEEEcccCCCC----CCchHHHHHhcCCCcEEEEcC
Q 028129 144 WHLSEGGFQEFRLLERLGEGSSKPTAIIGDVADELNLDLVIISMEAIHS----KHVDANLLAEFIPCPVLLLPL 213 (213)
Q Consensus 144 ~~l~~~g~~~~~v~~~v~~G~~~p~~~Il~~A~e~~aDLIVmG~~g~~~----~Gs~~~~vl~~a~cPVLvVp~ 213 (213)
+...+.|+.. +...+..|+ +.++|+++|+++++||||||+++++. -|++...++++++||||+||.
T Consensus 78 ~~~~~~~~~~--~~~~~~~g~--~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~Gs~~~~vl~~~~~pVlvv~~ 147 (150)
T 3tnj_A 78 QIGNTLGIDP--AHRWLVWGE--PREEIIRIAEQENVDLIVVGSHGRHGLALLLGSTANSVLHYAKCDVLAVRL 147 (150)
T ss_dssp HHHHHHTCCG--GGEEEEESC--HHHHHHHHHHHTTCSEEEEEEC--------CCCHHHHHHHHCSSEEEEEEC
T ss_pred HHHHHcCCCc--ceEEEecCC--HHHHHHHHHHHcCCCEEEEecCCCCCcCeEecchHHHHHHhCCCCEEEEeC
Confidence 2223335552 233456686 99999999999999999999998631 278888899999999999983
No 11
>3fdx_A Putative filament protein / universal stress PROT; structural genomics, APC60640.1, universal protein F, PSI-2; HET: MSE ATP; 1.58A {Klebsiella pneumoniae subsp} PDB: 3fh0_A*
Probab=99.82 E-value=1.3e-19 Score=138.20 Aligned_cols=122 Identities=21% Similarity=0.248 Sum_probs=94.2
Q ss_pred CcEEEEeeCCCCCCCHH--HHHHHHHHHHHHhhcCCEEEEEEEeCCCCCC------h-------h-hHHHHHHHHHHHHH
Q 028129 84 KHLLLPITDQNPYLSEG--TRQAAATTAALAKKYGADITVVVIDERQKES------L-------P-EHENRLSSIRWHLS 147 (213)
Q Consensus 84 k~ILV~vD~~~~~~S~~--s~~Al~~A~~LA~~~~a~L~ll~V~~~~~~~------~-------~-~~~~~l~~~~~~l~ 147 (213)
++||||+| +|+. +..++++|..+|+..+++|+++|+.+..... . . ..++..+.+.+.+.
T Consensus 2 k~ILv~vD-----~s~~~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 76 (143)
T 3fdx_A 2 NAILVPID-----ISDKEFTERIISHVESEARIDDAEVHFLTVIPSLPYYASLGMAYTAELPGMDELREGSETQLKEIAK 76 (143)
T ss_dssp CEEEEECC-----TTCSSCCTTHHHHHHHHHHHHTCEEEEEEEECC----------------CHHHHHHHHHHHHHHHHT
T ss_pred CEEEEEec-----CChHhhHHHHHHHHHHHHHhcCCeEEEEEEecCCcccccccccccchhhhHHHHHHHHHHHHHHHHH
Confidence 79999999 8999 9999999999999999999999887653210 0 0 11223333444455
Q ss_pred hCCCCceeEEEEEcccCCchHHHHHHHHHHcCCcEEEEcccCCCC----CCchHHHHHhcCCCcEEEEc
Q 028129 148 EGGFQEFRLLERLGEGSSKPTAIIGDVADELNLDLVIISMEAIHS----KHVDANLLAEFIPCPVLLLP 212 (213)
Q Consensus 148 ~~g~~~~~v~~~v~~G~~~p~~~Il~~A~e~~aDLIVmG~~g~~~----~Gs~~~~vl~~a~cPVLvVp 212 (213)
+.|.....+...+..|+ +.++|+++|+++++||||||+++... .|++...++++++||||+||
T Consensus 77 ~~~~~~~~v~~~~~~g~--~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~Gs~~~~v~~~~~~pVlvv~ 143 (143)
T 3fdx_A 77 KFSIPEDRMHFHVAEGS--PKDKILALAKSLPADLVIIASHRPDITTYLLGSNAAAVVRHAECSVLVVR 143 (143)
T ss_dssp TSCCCGGGEEEEEEESC--HHHHHHHHHHHTTCSEEEEESSCTTCCSCSSCHHHHHHHHHCSSEEEEEC
T ss_pred HcCCCCCceEEEEEecC--hHHHHHHHHHHhCCCEEEEeCCCCCCeeeeeccHHHHHHHhCCCCEEEeC
Confidence 55655444677778896 99999999999999999999985321 28999999999999999997
No 12
>2gm3_A Unknown protein; AT3G01520, putative ethylene-responsive protein, USP domain, nucleotide binding domain, AMP; HET: MSE AMP; 2.46A {Arabidopsis thaliana} SCOP: c.26.2.4
Probab=99.80 E-value=5.8e-19 Score=139.67 Aligned_cols=122 Identities=12% Similarity=0.187 Sum_probs=90.9
Q ss_pred cCCCcEEEEeeCCCCCCCH---------HHHHHHHHHHHHH-hh--cCCEEEEEEEeCCCCC----------Chhh----
Q 028129 81 TNFKHLLLPITDQNPYLSE---------GTRQAAATTAALA-KK--YGADITVVVIDERQKE----------SLPE---- 134 (213)
Q Consensus 81 ~~~k~ILV~vD~~~~~~S~---------~s~~Al~~A~~LA-~~--~~a~L~ll~V~~~~~~----------~~~~---- 134 (213)
.+|++|||++| +|+ .+..++++|..++ +. .+++|+++|+.+.... ...+
T Consensus 3 ~~~~~ILv~vD-----~s~~~~~~~~~~~s~~al~~a~~la~~~~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~ 77 (175)
T 2gm3_A 3 SEPTKVMVAVN-----ASTIKDYPNPSISCKRAFEWTLEKIVRSNTSDFKILLLHVQVVDEDGFDDVDSIYASPEDFRDM 77 (175)
T ss_dssp --CEEEEEECC-----BCSSSCTTCBCHHHHHHHHHHHHHTTTTCTTSEEEEEEEEEC----------CCCCSHHHHHHH
T ss_pred CCccEEEEEEC-----CCcccccccccHHHHHHHHHHHHHhhcccCCCCEEEEEEEeecccccccccccccCCHHHHHHH
Confidence 35899999999 798 9999999999987 43 6899999988643211 0101
Q ss_pred -------HHHHHHHHHHHHHhCCCCceeEEEEEcccCCchHHHHHHHHHHcCCcEEEEcccCCCC-----CCchHHHHHh
Q 028129 135 -------HENRLSSIRWHLSEGGFQEFRLLERLGEGSSKPTAIIGDVADELNLDLVIISMEAIHS-----KHVDANLLAE 202 (213)
Q Consensus 135 -------~~~~l~~~~~~l~~~g~~~~~v~~~v~~G~~~p~~~Il~~A~e~~aDLIVmG~~g~~~-----~Gs~~~~vl~ 202 (213)
.++.++.+.+.+...|++ +...+..|+ +.++|+++|+++++||||||++|++. .|++...+++
T Consensus 78 ~~~~~~~~~~~l~~~~~~~~~~g~~---~~~~v~~G~--~~~~I~~~a~~~~~DLIVmG~~g~~~~~~~~~Gsva~~vl~ 152 (175)
T 2gm3_A 78 RQSNKAKGLHLLEFFVNKCHEIGVG---CEAWIKTGD--PKDVICQEVKRVRPDFLVVGSRGLGRFQKVFVGTVSAFCVK 152 (175)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHHTCE---EEEEEEESC--HHHHHHHHHHHHCCSEEEEEECCCC--------CHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCc---eEEEEecCC--HHHHHHHHHHHhCCCEEEEeCCCCChhhhhhcCchHHHHHh
Confidence 122344444445556776 776777896 99999999999999999999998732 2788889999
Q ss_pred cCCCcEEEEc
Q 028129 203 FIPCPVLLLP 212 (213)
Q Consensus 203 ~a~cPVLvVp 212 (213)
+++||||+||
T Consensus 153 ~a~~pVlvv~ 162 (175)
T 2gm3_A 153 HAECPVMTIK 162 (175)
T ss_dssp HCSSCEEEEE
T ss_pred CCCCCEEEEc
Confidence 9999999997
No 13
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus}
Probab=99.79 E-value=1.4e-18 Score=148.03 Aligned_cols=144 Identities=17% Similarity=0.210 Sum_probs=120.0
Q ss_pred cchhhhhhhhcccCCCCCcccchhhhhhcCCCcEEEEeeCCCCCCCHHHHHHHHHHHHHHhhcCCEEEEEEEeCCCCCCh
Q 028129 53 LFPRFRRIGHKAKVKSPESEINSVAEAFTNFKHLLLPITDQNPYLSEGTRQAAATTAALAKKYGADITVVVIDERQKESL 132 (213)
Q Consensus 53 ~~~~~~r~~~~a~~~~~~~~~~~~~~~~~~~k~ILV~vD~~~~~~S~~s~~Al~~A~~LA~~~~a~L~ll~V~~~~~~~~ 132 (213)
++++..++.+.+.||+..++.... ....+++||+++| +++.+.+++++|..+++..+++|+++++.+...
T Consensus 142 ~Gs~~~~vl~~~~~PVlvv~~~~~--~~~~~~~Ilv~~d-----~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~~--- 211 (294)
T 3loq_A 142 LGSVSEGVLHDSKVPVYIFKHDMV--VNSLFDRVLVAYD-----FSKWADRALEYAKFVVKKTGGELHIIHVSEDGD--- 211 (294)
T ss_dssp HCCHHHHHHHHCSSCEEEECCCTT--TTCTTSEEEEECC-----SSHHHHHHHHHHHHHHHHHTCEEEEEEECSSSC---
T ss_pred eccHHHHHHhcCCCCEEEecCccc--cCccCCEEEEEEC-----CCHHHHHHHHHHHHHhhhcCCEEEEEEEccCch---
Confidence 578888999999999987775322 2377999999999 899999999999999999999999999987543
Q ss_pred hhHHHHHHHHHHHHHhCCCCceeEEEEEcccCCchHHHHHHHHHHcCCcEEEEcccCCCC-----CCchHHHHHhcCCCc
Q 028129 133 PEHENRLSSIRWHLSEGGFQEFRLLERLGEGSSKPTAIIGDVADELNLDLVIISMEAIHS-----KHVDANLLAEFIPCP 207 (213)
Q Consensus 133 ~~~~~~l~~~~~~l~~~g~~~~~v~~~v~~G~~~p~~~Il~~A~e~~aDLIVmG~~g~~~-----~Gs~~~~vl~~a~cP 207 (213)
.++.++.+.+.+.+.|++ +...+..|+ +.++|+++++++++||||||+++++. .|++...++++++||
T Consensus 212 --~~~~l~~~~~~l~~~~~~---~~~~~~~g~--~~~~I~~~a~~~~~dLlV~G~~~~~~~~~~~~Gs~~~~vl~~~~~p 284 (294)
T 3loq_A 212 --KTADLRVMEEVIGAEGIE---VHVHIESGT--PHKAILAKREEINATTIFMGSRGAGSVMTMILGSTSESVIRRSPVP 284 (294)
T ss_dssp --CHHHHHHHHHHHHHTTCC---EEEEEECSC--HHHHHHHHHHHTTCSEEEEECCCCSCHHHHHHHCHHHHHHHHCSSC
T ss_pred --HHHHHHHHHHHHHHcCCc---EEEEEecCC--HHHHHHHHHHhcCcCEEEEeCCCCCCccceeeCcHHHHHHhcCCCC
Confidence 245566777777778888 777777886 99999999999999999999998721 166777789999999
Q ss_pred EEEEcC
Q 028129 208 VLLLPL 213 (213)
Q Consensus 208 VLvVp~ 213 (213)
||+||.
T Consensus 285 vLvv~~ 290 (294)
T 3loq_A 285 VFVCKR 290 (294)
T ss_dssp EEEECS
T ss_pred EEEECC
Confidence 999983
No 14
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa}
Probab=99.79 E-value=8.1e-19 Score=149.50 Aligned_cols=150 Identities=17% Similarity=0.148 Sum_probs=111.1
Q ss_pred cCcchhhhhhhhcccCCCCCcccchhhhhhcCCCcEEEEeeCCCCCCCHH-------HHHHHHHHHHHHhhcCCEEEEEE
Q 028129 51 LSLFPRFRRIGHKAKVKSPESEINSVAEAFTNFKHLLLPITDQNPYLSEG-------TRQAAATTAALAKKYGADITVVV 123 (213)
Q Consensus 51 ~~~~~~~~r~~~~a~~~~~~~~~~~~~~~~~~~k~ILV~vD~~~~~~S~~-------s~~Al~~A~~LA~~~~a~L~ll~ 123 (213)
.-++++..++.+.++||+..++... .+ .+++||+|+| +|+. +.+++++|..+|+.++++|+++|
T Consensus 106 ~~~gs~~~~vl~~~~~PVlvv~~~~---~~-~~~~Ilva~D-----~s~~~~~~~~~s~~al~~a~~la~~~~a~l~ll~ 176 (290)
T 3mt0_A 106 AILTPDDWKLLRFAPCPVLMTKTAR---PW-TGGKILAAVD-----VGNNDGEHRSLHAGIISHAYDIAGLAKATLHVIS 176 (290)
T ss_dssp TSCCHHHHHHHHHCSSCEEEECCCS---CS-TTCEEEEEEC-----TTCCSHHHHHHHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred cccCHHHHHHHhcCCCCEEEecCCC---CC-CCCeEEEEEC-----CCCcchhhhHHHHHHHHHHHHHHHHcCCeEEEEE
Confidence 4478999999999999998777422 23 7999999999 7887 89999999999999999999998
Q ss_pred EeCCCCCCh--h------hHH-HHHHHHHHHHHhCCCCceeEEEEEcccCCchHHHHHHHHHHcCCcEEEEcccCCCC--
Q 028129 124 IDERQKESL--P------EHE-NRLSSIRWHLSEGGFQEFRLLERLGEGSSKPTAIIGDVADELNLDLVIISMEAIHS-- 192 (213)
Q Consensus 124 V~~~~~~~~--~------~~~-~~l~~~~~~l~~~g~~~~~v~~~v~~G~~~p~~~Il~~A~e~~aDLIVmG~~g~~~-- 192 (213)
+.+...... + +.+ ...+.+.+.+.+.|+.. +...+..|+ +.++|+++|+++++||||||++|++.
T Consensus 177 v~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--~~~~v~~g~--~~~~I~~~a~~~~~dLiVmG~~g~~~~~ 252 (290)
T 3mt0_A 177 AHPSPMLSSADPTFQLSETIEARYREACRTFQAEYGFSD--EQLHIEEGP--ADVLIPRTAQKLDAVVTVIGTVARTGLS 252 (290)
T ss_dssp EEC---------CHHHHHHHHHHHHHHHHHHHHHHTCCT--TTEEEEESC--HHHHHHHHHHHHTCSEEEEECCSSCCGG
T ss_pred EecCccccccCchhHHHHHHHHHHHHHHHHHHHHcCCCc--ceEEEeccC--HHHHHHHHHHhcCCCEEEECCCCCcCCc
Confidence 876543211 0 011 11112222333446642 223455686 99999999999999999999998732
Q ss_pred ---CCchHHHHHhcCCCcEEEEcC
Q 028129 193 ---KHVDANLLAEFIPCPVLLLPL 213 (213)
Q Consensus 193 ---~Gs~~~~vl~~a~cPVLvVp~ 213 (213)
.|++...++++++||||+||.
T Consensus 253 ~~~~Gsv~~~vl~~~~~pVLvv~~ 276 (290)
T 3mt0_A 253 GALIGNTAEVVLDTLESDVLVLKP 276 (290)
T ss_dssp GCCSCHHHHHHHTTCSSEEEEECC
T ss_pred ceecchHHHHHHhcCCCCEEEECC
Confidence 288899999999999999973
No 15
>1jmv_A USPA, universal stress protein A; chaperone; 1.85A {Haemophilus influenzae} SCOP: c.26.2.4
Probab=99.79 E-value=6.7e-19 Score=134.10 Aligned_cols=118 Identities=19% Similarity=0.314 Sum_probs=89.5
Q ss_pred CCCcEEEEeeCCCCCCCHHHHHHHHHHHHHHhhcCCEEEEEEEeCC-C--CCCh-------------hhHHHHHHHHHHH
Q 028129 82 NFKHLLLPITDQNPYLSEGTRQAAATTAALAKKYGADITVVVIDER-Q--KESL-------------PEHENRLSSIRWH 145 (213)
Q Consensus 82 ~~k~ILV~vD~~~~~~S~~s~~Al~~A~~LA~~~~a~L~ll~V~~~-~--~~~~-------------~~~~~~l~~~~~~ 145 (213)
||++||||+| +|+.+..++++|..+|+..+++|+++|+.+. . .... .+.++.++ +.
T Consensus 1 m~~~ILv~~D-----~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---~~ 72 (141)
T 1jmv_A 1 MYKHILVAVD-----LSEESPILLKKAVGIAKRHDAKLSIIHVDVNFSDLYTGLIDVNMSSMQDRISTETQKALL---DL 72 (141)
T ss_dssp CCSEEEEEEC-----CSTTHHHHHHHHHHHHHHHTCEEEEEEEEECCGGGCCCCEEHHHHHHTTCCCCHHHHHHH---HH
T ss_pred CCceEEEEec-----CchhhHHHHHHHHHHHHhcCCEEEEEEEecCchhhhccccccchHHHHHHHHHHHHHHHH---HH
Confidence 6899999999 8999999999999999999999999988632 1 1111 01122222 23
Q ss_pred HHhCCCCceeE-EEEEcccCCchHHHHHHHHHHcCCcEEEEcccCCCCC---CchHHHHHhcCCCcEEEEcC
Q 028129 146 LSEGGFQEFRL-LERLGEGSSKPTAIIGDVADELNLDLVIISMEAIHSK---HVDANLLAEFIPCPVLLLPL 213 (213)
Q Consensus 146 l~~~g~~~~~v-~~~v~~G~~~p~~~Il~~A~e~~aDLIVmG~~g~~~~---Gs~~~~vl~~a~cPVLvVp~ 213 (213)
..+.|+. + ...+..|+ +.++|+++|+++++||||||++ ++.. |++...++++++||||+||.
T Consensus 73 ~~~~~~~---~~~~~~~~g~--~~~~I~~~a~~~~~dliV~G~~-~~~~~~lgs~~~~vl~~~~~pVlvv~~ 138 (141)
T 1jmv_A 73 AESVDYP---ISEKLSGSGD--LGQVLSDAIEQYDVDLLVTGHH-QDFWSKLMSSTRQVMNTIKIDMLVVPL 138 (141)
T ss_dssp HHHSSSC---CCCEEEEEEC--HHHHHHHHHHHTTCCEEEEEEC-CCCHHHHHHHHHHHHTTCCSEEEEEEC
T ss_pred HHHcCCC---ceEEEEecCC--HHHHHHHHHHhcCCCEEEEeCC-CchhhhhcchHHHHHhcCCCCEEEeeC
Confidence 3345665 3 34455686 9999999999999999999999 6211 56778889999999999983
No 16
>1q77_A Hypothetical protein AQ_178; structural genomics, universal stress protein, PSI, protein structure initiative; 2.70A {Aquifex aeolicus} SCOP: c.26.2.4
Probab=99.79 E-value=6.5e-19 Score=133.89 Aligned_cols=116 Identities=13% Similarity=0.177 Sum_probs=90.5
Q ss_pred cCCCcEEEEeeCCCCCCCHHHHHHHHHHHHHHhhcCCEEEEEEEe-CC-C---------CC-C--h-----hhHHHHHHH
Q 028129 81 TNFKHLLLPITDQNPYLSEGTRQAAATTAALAKKYGADITVVVID-ER-Q---------KE-S--L-----PEHENRLSS 141 (213)
Q Consensus 81 ~~~k~ILV~vD~~~~~~S~~s~~Al~~A~~LA~~~~a~L~ll~V~-~~-~---------~~-~--~-----~~~~~~l~~ 141 (213)
.+|++|||++| +|+.+..++++|..+|+..+++|+++++. +. . .. . . .+.++.+++
T Consensus 2 ~~~~~ILv~~D-----~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 76 (138)
T 1q77_A 2 NAMKVLLVLTD-----AYSDCEKAITYAVNFSEKLGAELDILAVLEDVYNLERANVTFGLPFPPEIKEESKKRIERRLRE 76 (138)
T ss_dssp CCCEEEEEEES-----TTCCCHHHHHHHHHHHTTTCCEEEEEEECHHHHHHHHHHHHHCCCCCTHHHHHHHHHHHHHHHH
T ss_pred CcccEEEEEcc-----CCHhHHHHHHHHHHHHHHcCCeEEEEEEecccccccccccccCCCCChHHHHHHHHHHHHHHHH
Confidence 47899999999 89999999999999999999999999876 42 0 11 1 1 012233444
Q ss_pred HHHH--HHhCCCCceeEEEEEcccCCchHHHHHHHHHHcCCcEEEEcccCCCCCCchHHHHHhcCCCcEEEEc
Q 028129 142 IRWH--LSEGGFQEFRLLERLGEGSSKPTAIIGDVADELNLDLVIISMEAIHSKHVDANLLAEFIPCPVLLLP 212 (213)
Q Consensus 142 ~~~~--l~~~g~~~~~v~~~v~~G~~~p~~~Il~~A~e~~aDLIVmG~~g~~~~Gs~~~~vl~~a~cPVLvVp 212 (213)
+ +. +...| + ++..+..|+ +.++|+++|+++++||||||++|+ ++...++++++||||+||
T Consensus 77 ~-~~~~~~~~~-~---~~~~~~~g~--~~~~I~~~a~~~~~dliV~G~~g~----sv~~~vl~~a~~PVlvv~ 138 (138)
T 1q77_A 77 V-WEKLTGSTE-I---PGVEYRIGP--LSEEVKKFVEGKGYELVVWACYPS----AYLCKVIDGLNLASLIVK 138 (138)
T ss_dssp H-HHHHHSCCC-C---CCEEEECSC--HHHHHHHHHTTSCCSEEEECSCCG----GGTHHHHHHSSSEEEECC
T ss_pred H-HHHhhccCC-c---ceEEEEcCC--HHHHHHHHHHhcCCCEEEEeCCCC----chHHHHHHhCCCceEeeC
Confidence 4 33 22334 3 555567786 999999999999999999999985 788899999999999987
No 17
>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A*
Probab=99.77 E-value=5.4e-18 Score=145.61 Aligned_cols=151 Identities=13% Similarity=0.045 Sum_probs=114.8
Q ss_pred cCcchhhhhhhhcccCCCCCcccchhhhhhcCCCcEEEEeeCCCCCCCHHHHHHHHHHHHHHhhcCCEEEEEEEeCCCCC
Q 028129 51 LSLFPRFRRIGHKAKVKSPESEINSVAEAFTNFKHLLLPITDQNPYLSEGTRQAAATTAALAKKYGADITVVVIDERQKE 130 (213)
Q Consensus 51 ~~~~~~~~r~~~~a~~~~~~~~~~~~~~~~~~~k~ILV~vD~~~~~~S~~s~~Al~~A~~LA~~~~a~L~ll~V~~~~~~ 130 (213)
.-++++..++.+.+.||+..++.......+..+++|||++| +++.+..++++|..+|+..+++|+++++.+....
T Consensus 139 ~~~Gs~~~~vl~~~~~PVlvv~~~~~~~~~~~~~~Ilv~~D-----~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~ 213 (309)
T 3cis_A 139 RLLGSVSSGLLRHAHCPVVIIHDEDSVMPHPQQAPVLVGVD-----GSSASELATAIAFDEASRRNVDLVALHAWSDVDV 213 (309)
T ss_dssp CCSCHHHHHHHHHCSSCEEEECTTCCCSCSSCCCCEEEECC-----SSHHHHHHHHHHHHHHHHTTCCEEEEEESCSSCC
T ss_pred cccCcHHHHHHHhCCCCEEEEcCCcccCCCCCCCeEEEEeC-----CChHHHHHHHHHHHHHHhcCCEEEEEEEeecccc
Confidence 34788999999999999987775332112456899999999 8999999999999999999999999988764321
Q ss_pred C------hh----hHHHHHHHHHHHHHh--CCCCceeEEEEEcccCCchHHHHHHHHHHcCCcEEEEcccCCCC-----C
Q 028129 131 S------LP----EHENRLSSIRWHLSE--GGFQEFRLLERLGEGSSKPTAIIGDVADELNLDLVIISMEAIHS-----K 193 (213)
Q Consensus 131 ~------~~----~~~~~l~~~~~~l~~--~g~~~~~v~~~v~~G~~~p~~~Il~~A~e~~aDLIVmG~~g~~~-----~ 193 (213)
. .. +.++.+++..+.+.+ .|+. ++..+..|+ +.++|+++|+ ++||||||+++++. .
T Consensus 214 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~---~~~~~~~g~--~~~~I~~~a~--~adliV~G~~~~~~~~~~l~ 286 (309)
T 3cis_A 214 SEWPGIDWPATQSMAEQVLAERLAGWQERYPNVA---ITRVVVRDQ--PARQLVQRSE--EAQLVVVGSRGRGGYAGMLV 286 (309)
T ss_dssp TTCSSCCHHHHHHHHHHHHHHHHTTHHHHCTTSC---EEEEEESSC--HHHHHHHHHT--TCSEEEEESSCSSCCTTCSS
T ss_pred cCCCcccHHHHHHHHHHHHHHHHHHHHhhCCCCc---EEEEEEcCC--HHHHHHHhhC--CCCEEEECCCCCCCcccccc
Confidence 1 11 112223333222322 3666 777777886 9999999997 89999999998632 2
Q ss_pred CchHHHHHhcCCCcEEEEcC
Q 028129 194 HVDANLLAEFIPCPVLLLPL 213 (213)
Q Consensus 194 Gs~~~~vl~~a~cPVLvVp~ 213 (213)
|++...++++++||||+||.
T Consensus 287 Gsv~~~vl~~~~~pVlvv~~ 306 (309)
T 3cis_A 287 GSVGETVAQLARTPVIVARE 306 (309)
T ss_dssp CHHHHHHHHHCSSCEEEECC
T ss_pred CcHHHHHHhcCCCCEEEeCC
Confidence 88999999999999999983
No 18
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis}
Probab=99.75 E-value=9.3e-18 Score=144.05 Aligned_cols=149 Identities=15% Similarity=0.164 Sum_probs=111.8
Q ss_pred CcchhhhhhhhcccCCCCCcccchhhhhhcCCCcEEEEeeCCCCCCCH-------HHHHHHHHHHHHHhhc--CCEEEEE
Q 028129 52 SLFPRFRRIGHKAKVKSPESEINSVAEAFTNFKHLLLPITDQNPYLSE-------GTRQAAATTAALAKKY--GADITVV 122 (213)
Q Consensus 52 ~~~~~~~r~~~~a~~~~~~~~~~~~~~~~~~~k~ILV~vD~~~~~~S~-------~s~~Al~~A~~LA~~~--~a~L~ll 122 (213)
-++++..++.+.++||+..++... +..+++||+++| +++ .+.+++++|..+|+.. +++|+++
T Consensus 129 ~~Gs~~~~vl~~~~~PVlvv~~~~----~~~~~~Ilva~D-----~s~~~~~~~~~s~~al~~a~~la~~~~~~a~l~ll 199 (319)
T 3olq_A 129 IFTPLDWQLLRKCPAPVWMVKDKE----WPEYGTIVVAAN-----LSNEESYHDALNLKLIELTNDLSHRIQKDPDVHLL 199 (319)
T ss_dssp BCCHHHHHHHHHCSSCEEEEESSC----CCTTCEEEEECC-----CSCCSTHHHHHHHHHHHHHHHHHHHHCSSCCEEEE
T ss_pred cccccHHHHHhcCCCCEEEecCcc----cccCCeEEEEEC-----CCCcchhHHHHHHHHHHHHHHHHHhccCCCeEEEE
Confidence 378899999999999998777522 457999999999 787 6799999999999999 9999999
Q ss_pred EEeCCCCCC---------hhhH-HHH----HHHHHHHHHhCCCCceeEEEEEcccCCchHHHHHHHHHHcCCcEEEEccc
Q 028129 123 VIDERQKES---------LPEH-ENR----LSSIRWHLSEGGFQEFRLLERLGEGSSKPTAIIGDVADELNLDLVIISME 188 (213)
Q Consensus 123 ~V~~~~~~~---------~~~~-~~~----l~~~~~~l~~~g~~~~~v~~~v~~G~~~p~~~Il~~A~e~~aDLIVmG~~ 188 (213)
|+.+..... ..+. ++. .+.+...+.+.|+.. +...+..|+ +.++|+++|+++++||||||++
T Consensus 200 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~v~~g~--~~~~I~~~a~~~~~dLiV~G~~ 275 (319)
T 3olq_A 200 SAYPVAPINIAIELPDFDPNLYNNALRGQHLIAMKELRQKFSIPE--EKTHVKEGL--PEQVIPQVCEELNAGIVVLGIL 275 (319)
T ss_dssp EEECCCSCSCCTTCTTCCHHHHHHHHHHHHHHHHHHHHHHTTCCG--GGEEEEESC--HHHHHHHHHHHTTEEEEEEECC
T ss_pred EeecCcchhhhccCCcccHHHHHHHHHHHHHHHHHHHHHHhCCCc--ccEEEecCC--cHHHHHHHHHHhCCCEEEEecc
Confidence 887654221 0111 111 122223345556643 233455686 9999999999999999999999
Q ss_pred CCCCC-----CchHHHHHhcCCCcEEEEcC
Q 028129 189 AIHSK-----HVDANLLAEFIPCPVLLLPL 213 (213)
Q Consensus 189 g~~~~-----Gs~~~~vl~~a~cPVLvVp~ 213 (213)
|++.- |++...++++++||||+||.
T Consensus 276 g~~~~~~~~~Gsv~~~vl~~~~~pVLvv~~ 305 (319)
T 3olq_A 276 GRTGLSAAFLGNTAEQLIDHIKCDLLAIKP 305 (319)
T ss_dssp SCCSTHHHHHHHHHHHHHTTCCSEEEEECC
T ss_pred CccCCccccccHHHHHHHhhCCCCEEEECC
Confidence 87221 66677789999999999973
No 19
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis}
Probab=99.75 E-value=6.8e-18 Score=144.90 Aligned_cols=124 Identities=15% Similarity=0.135 Sum_probs=96.5
Q ss_pred hhcCCCcEEEEeeCCCCCCCHHHHHHHHHHHHHHhhcCCEEEEEEEeCCCC---CC---hh-----------hHHHHHHH
Q 028129 79 AFTNFKHLLLPITDQNPYLSEGTRQAAATTAALAKKYGADITVVVIDERQK---ES---LP-----------EHENRLSS 141 (213)
Q Consensus 79 ~~~~~k~ILV~vD~~~~~~S~~s~~Al~~A~~LA~~~~a~L~ll~V~~~~~---~~---~~-----------~~~~~l~~ 141 (213)
.|.+|++|||++| +|+.+..++++|+++|+..+++|+++++.+... .. .. +.++.+++
T Consensus 3 ~M~~~k~ILv~~D-----~s~~s~~al~~A~~lA~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 77 (319)
T 3olq_A 3 AMEKYQNLLVVID-----PNQDDQPALRRAVYIVQRNGGRIKAFLPVYDLSYDMTTLLSPDERNAMRKGVINQKTAWIKQ 77 (319)
T ss_dssp --CCSCEEEEECC-----TTCSCCHHHHHHHHHHHHHCCEEEEEEEECCGGGGCTTTSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccceEEEEEC-----CCcccHHHHHHHHHHHHHcCCeEEEEEEecccchhhccccChhhHHHHHHHHHHHHHHHHHH
Confidence 5788999999999 899999999999999999999999998754311 11 00 11223334
Q ss_pred HHHHHHhCCCCceeEEEEEc-ccCCchHHHHHHHHHHcCCcEEEEcccCCCC-----CCchHHHHHhcCCCcEEEEc
Q 028129 142 IRWHLSEGGFQEFRLLERLG-EGSSKPTAIIGDVADELNLDLVIISMEAIHS-----KHVDANLLAEFIPCPVLLLP 212 (213)
Q Consensus 142 ~~~~l~~~g~~~~~v~~~v~-~G~~~p~~~Il~~A~e~~aDLIVmG~~g~~~-----~Gs~~~~vl~~a~cPVLvVp 212 (213)
+.+.+...|++ +...+. .|+ +.++|++++++.++||||||++++.. .|++...++++++||||+||
T Consensus 78 ~~~~~~~~~v~---~~~~~~~~g~--~~~~i~~~a~~~~~DLiV~G~~g~~~~~~~~~Gs~~~~vl~~~~~PVlvv~ 149 (319)
T 3olq_A 78 QARYYLEAGIQ---IDIKVIWHNR--PYEAIIEEVITDKHDLLIKMAHQHDKLGSLIFTPLDWQLLRKCPAPVWMVK 149 (319)
T ss_dssp HHHHHHHTTCC---EEEEEEECSC--HHHHHHHHHHHHTCSEEEEEEBCC--CCSCBCCHHHHHHHHHCSSCEEEEE
T ss_pred HHHHHhhcCCe---EEEEEEecCC--hHHHHHHHHHhcCCCEEEEecCcCchhhcccccccHHHHHhcCCCCEEEec
Confidence 44444567877 777777 786 99999999999999999999998631 28889999999999999997
No 20
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa}
Probab=99.75 E-value=7.3e-18 Score=143.57 Aligned_cols=119 Identities=20% Similarity=0.264 Sum_probs=101.6
Q ss_pred hhcCCCcEEEEeeCCCCCCCHHHHHHHHHHHHHHhhcCCEEEEEEEeCCCCCChhhHHHHHHHHHHHHHhCCCCceeEEE
Q 028129 79 AFTNFKHLLLPITDQNPYLSEGTRQAAATTAALAKKYGADITVVVIDERQKESLPEHENRLSSIRWHLSEGGFQEFRLLE 158 (213)
Q Consensus 79 ~~~~~k~ILV~vD~~~~~~S~~s~~Al~~A~~LA~~~~a~L~ll~V~~~~~~~~~~~~~~l~~~~~~l~~~g~~~~~v~~ 158 (213)
.|.+|++|||++| +|+.+..++++|..+|+..+++|+++++.++ .+.++.++++.+.+...|++ +..
T Consensus 3 ~M~~~~~ILv~~D-----~s~~s~~al~~A~~la~~~~a~l~ll~v~~~-----~~~~~~l~~~~~~~~~~~~~---~~~ 69 (290)
T 3mt0_A 3 AMQAIRSILVVIE-----PDQLEGLALKRAQLIAGVTQSHLHLLVCEKR-----RDHSAALNDLAQELREEGYS---VST 69 (290)
T ss_dssp TTTTCCEEEEECC-----SSCSCCHHHHHHHHHHHHHCCEEEEEEECSS-----SCCHHHHHHHHHHHHHTTCC---EEE
T ss_pred hhhhhceEEEEeC-----CCccchHHHHHHHHHHHhcCCeEEEEEeeCc-----HHHHHHHHHHHHHHhhCCCe---EEE
Confidence 3678999999999 8999999999999999999999999988763 23456677777777778888 777
Q ss_pred EEc-ccCCchHHHHHHHHHHcCCcEEEEcccCCCC-----CCchHHHHHhcCCCcEEEEc
Q 028129 159 RLG-EGSSKPTAIIGDVADELNLDLVIISMEAIHS-----KHVDANLLAEFIPCPVLLLP 212 (213)
Q Consensus 159 ~v~-~G~~~p~~~Il~~A~e~~aDLIVmG~~g~~~-----~Gs~~~~vl~~a~cPVLvVp 212 (213)
.+. .|+ +.++|++++++.++||||||++++.. .|++...++++++||||+||
T Consensus 70 ~~~~~g~--~~~~i~~~a~~~~~dliV~G~~~~~~~~~~~~gs~~~~vl~~~~~PVlvv~ 127 (290)
T 3mt0_A 70 NQAWKDS--LHQTIIAEQQAEGCGLIIKQHFPDNPLKKAILTPDDWKLLRFAPCPVLMTK 127 (290)
T ss_dssp EEECSSS--HHHHHHHHHHHHTCSEEEEECCCSCTTSTTSCCHHHHHHHHHCSSCEEEEC
T ss_pred EEEeCCC--HHHHHHHHHHhcCCCEEEEecccCCchhhcccCHHHHHHHhcCCCCEEEec
Confidence 766 464 99999999999999999999998631 28889999999999999998
No 21
>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A*
Probab=99.74 E-value=2.1e-17 Score=138.64 Aligned_cols=140 Identities=18% Similarity=0.120 Sum_probs=116.9
Q ss_pred cCcchhhhhhhhcccCCCCCcccchhhhhhcCCCcEEEEeeCCCCCCCHHHHHHHHHHHHHHhhcCCEEEEEEEeCCCCC
Q 028129 51 LSLFPRFRRIGHKAKVKSPESEINSVAEAFTNFKHLLLPITDQNPYLSEGTRQAAATTAALAKKYGADITVVVIDERQKE 130 (213)
Q Consensus 51 ~~~~~~~~r~~~~a~~~~~~~~~~~~~~~~~~~k~ILV~vD~~~~~~S~~s~~Al~~A~~LA~~~~a~L~ll~V~~~~~~ 130 (213)
.-++++..++.+.+.||+..++... ..+++||+++| +++.+.+++++|..+++..+++|+++++.+..
T Consensus 127 ~~~Gs~~~~v~~~a~~PVlvv~~~~-----~~~~~ilv~~d-----~s~~~~~al~~a~~la~~~~a~l~ll~v~~~~-- 194 (268)
T 3ab8_A 127 GGLGSTADRVLRASPVPVLLAPGEP-----VELEGALLGYD-----ASESAVRALHALAPLARALGLGVRVVSVHEDP-- 194 (268)
T ss_dssp CSCCHHHHHHHHHCSSCEEEECSSC-----CCCCEEEEECC-----SCHHHHHHHHHHHHHHHHHTCCEEEEEECSSH--
T ss_pred cccchhHHHHHHhCCCCEEEECCCC-----CCCCEEEEEEC-----CCHHHHHHHHHHHHhhhcCCCEEEEEEEcCcH--
Confidence 4478999999999999998776522 26899999999 89999999999999999999999999997642
Q ss_pred ChhhHHHHHHHHHHHHHhCCCCceeEEEEEcccCCchHHHHHHHHHHcCCcEEEEcccCCC--CCCchHHHHHhcCCCcE
Q 028129 131 SLPEHENRLSSIRWHLSEGGFQEFRLLERLGEGSSKPTAIIGDVADELNLDLVIISMEAIH--SKHVDANLLAEFIPCPV 208 (213)
Q Consensus 131 ~~~~~~~~l~~~~~~l~~~g~~~~~v~~~v~~G~~~p~~~Il~~A~e~~aDLIVmG~~g~~--~~Gs~~~~vl~~a~cPV 208 (213)
.+.+..++++.+.+.+.|++ +...+..|+ +.++|+++++++ ||||||+ +.. ..|++...++++++|||
T Consensus 195 --~~~~~~l~~~~~~l~~~~~~---~~~~~~~g~--~~~~i~~~a~~~--dliV~G~-~~~~~~~Gs~~~~vl~~~~~pv 264 (268)
T 3ab8_A 195 --ARAEAWALEAEAYLRDHGVE---ASALVLGGD--AADHLLRLQGPG--DLLALGA-PVRRLVFGSTAERVIRNAQGPV 264 (268)
T ss_dssp --HHHHHHHHHHHHHHHHTTCC---EEEEEECSC--HHHHHHHHCCTT--EEEEEEC-CCSCCSSCCHHHHHHHHCSSCE
T ss_pred --HHHHHHHHHHHHHHHHcCCc---eEEEEeCCC--hHHHHHHHHHhC--CEEEECC-cccccEeccHHHHHHhcCCCCE
Confidence 23455667777777777887 777677786 999999999997 9999999 421 23999999999999999
Q ss_pred EEEc
Q 028129 209 LLLP 212 (213)
Q Consensus 209 LvVp 212 (213)
|+||
T Consensus 265 lvv~ 268 (268)
T 3ab8_A 265 LTAR 268 (268)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 9997
No 22
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus}
Probab=99.72 E-value=1.9e-17 Score=141.08 Aligned_cols=123 Identities=16% Similarity=0.189 Sum_probs=97.4
Q ss_pred hhhcCCCcEEEEeeCCCCCCCHHHHHHHHHHHHHHhhcCCEEEEEEEeCCCCCC-------h--------hhHHHHHHHH
Q 028129 78 EAFTNFKHLLLPITDQNPYLSEGTRQAAATTAALAKKYGADITVVVIDERQKES-------L--------PEHENRLSSI 142 (213)
Q Consensus 78 ~~~~~~k~ILV~vD~~~~~~S~~s~~Al~~A~~LA~~~~a~L~ll~V~~~~~~~-------~--------~~~~~~l~~~ 142 (213)
..+.||++|||++| +|+.+..++++|..+|+..+++|+++++.+..... . .+.++.++++
T Consensus 17 ~~m~m~~~ILv~vD-----~s~~s~~al~~A~~lA~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 91 (294)
T 3loq_A 17 NLYFQSNAMLLPTD-----LSENSFKVLEYLGDFKKVGVEEIGVLFVINLTKLSTVSGGIDIDHYIDEMSEKAEEVLPEV 91 (294)
T ss_dssp CCSSTTCEEEEECC-----SCTGGGGGGGGHHHHHHTTCCEEEEECCEECTTC-----CCCTTHHHHHHHHHHHHHHHHH
T ss_pred hHHHhhccEEEecC-----CCHHHHHHHHHHHHHHhhcCCEEEEEEEecCcccccccccccHHHHHHHHHHHHHHHHHHH
Confidence 34678999999999 89999999999999999999999999775543210 0 1233445555
Q ss_pred HHHHHhCCCCceeEEE-EEc-ccCCchHHHHHHHHHHcCCcEEEEcccCCCC-----CCchHHHHHhcCCCcEEEEc
Q 028129 143 RWHLSEGGFQEFRLLE-RLG-EGSSKPTAIIGDVADELNLDLVIISMEAIHS-----KHVDANLLAEFIPCPVLLLP 212 (213)
Q Consensus 143 ~~~l~~~g~~~~~v~~-~v~-~G~~~p~~~Il~~A~e~~aDLIVmG~~g~~~-----~Gs~~~~vl~~a~cPVLvVp 212 (213)
.+.+.+.|++ ++. .+. .|+ +.++| ++++.++||||||++++.. .|++...++++++||||+||
T Consensus 92 ~~~~~~~g~~---~~~~~v~~~g~--~~~~I--~a~~~~~DliV~G~~g~~~~~~~~~Gs~~~~vl~~~~~PVlvv~ 161 (294)
T 3loq_A 92 AQKIEAAGIK---AEVIKPFPAGD--PVVEI--IKASENYSFIAMGSRGASKFKKILLGSVSEGVLHDSKVPVYIFK 161 (294)
T ss_dssp HHHHHHTTCE---EEECSSCCEEC--HHHHH--HHHHTTSSEEEEECCCCCHHHHHHHCCHHHHHHHHCSSCEEEEC
T ss_pred HHHHHHcCCC---cceeEeeccCC--hhHhe--eeccCCCCEEEEcCCCCccccceeeccHHHHHHhcCCCCEEEec
Confidence 5666677877 776 566 786 99999 9999999999999998721 17778888999999999997
No 23
>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A*
Probab=99.71 E-value=1.5e-16 Score=136.62 Aligned_cols=122 Identities=12% Similarity=0.099 Sum_probs=94.3
Q ss_pred hhcCCCcEEEEeeCCCCCCCHHHHHHHHHHHHHHhhcCCEEEEEEEeCCCCCC-----hh---------hHHHHHHHHHH
Q 028129 79 AFTNFKHLLLPITDQNPYLSEGTRQAAATTAALAKKYGADITVVVIDERQKES-----LP---------EHENRLSSIRW 144 (213)
Q Consensus 79 ~~~~~k~ILV~vD~~~~~~S~~s~~Al~~A~~LA~~~~a~L~ll~V~~~~~~~-----~~---------~~~~~l~~~~~ 144 (213)
...++++|||++| +|+.+..++++|..+|+..+++|+++++.++.... .+ +.++.++++.+
T Consensus 15 ~~~~~~~ILv~~D-----~s~~s~~al~~A~~lA~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 89 (309)
T 3cis_A 15 SGNSSLGIIVGID-----DSPAAQVAVRWAARDAELRKIPLTLVHAVSPEVATWLEVPLPPGVLRWQQDHGRHLIDDALK 89 (309)
T ss_dssp ---CTTEEEEECC-----SSHHHHHHHHHHHHHHHHHTCCEEEEEECCCCCCCTTCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCCeEEEEEC-----CCHHHHHHHHHHHHHHHhcCCcEEEEEEecCcccccccCCCCchhhHHHHHHHHHHHHHHHH
Confidence 4467999999999 89999999999999999999999999886533211 11 12333444444
Q ss_pred HHHhC-----CCCceeEEEEEcccCCchHHHHHHHHHHcCCcEEEEcccCCCC-----CCchHHHHHhcCCCcEEEEc
Q 028129 145 HLSEG-----GFQEFRLLERLGEGSSKPTAIIGDVADELNLDLVIISMEAIHS-----KHVDANLLAEFIPCPVLLLP 212 (213)
Q Consensus 145 ~l~~~-----g~~~~~v~~~v~~G~~~p~~~Il~~A~e~~aDLIVmG~~g~~~-----~Gs~~~~vl~~a~cPVLvVp 212 (213)
.+.+. |++ ++..+..|+ +.++|+++|+ ++||||||+++++. .|++...++++++||||+||
T Consensus 90 ~~~~~~~~~~~~~---~~~~~~~g~--~~~~I~~~a~--~~DliV~G~~g~~~~~~~~~Gs~~~~vl~~~~~PVlvv~ 160 (309)
T 3cis_A 90 VVEQASLRAGPPT---VHSEIVPAA--AVPTLVDMSK--DAVLMVVGCLGSGRWPGRLLGSVSSGLLRHAHCPVVIIH 160 (309)
T ss_dssp HHHHHCSSSCCSC---EEEEEESSC--HHHHHHHHGG--GEEEEEEESSCTTCCTTCCSCHHHHHHHHHCSSCEEEEC
T ss_pred HHHHhcccCCCce---EEEEEecCC--HHHHHHHHhc--CCCEEEECCCCCccccccccCcHHHHHHHhCCCCEEEEc
Confidence 44443 666 777777896 9999999997 79999999998632 28899999999999999997
No 24
>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A*
Probab=99.69 E-value=2.1e-16 Score=132.60 Aligned_cols=117 Identities=26% Similarity=0.275 Sum_probs=91.8
Q ss_pred CcEEEEeeCCCCCCCHHHHHHHHHHHHHHhhcCCEEEEEEEeCCCCC-------------Ch------------hhHHHH
Q 028129 84 KHLLLPITDQNPYLSEGTRQAAATTAALAKKYGADITVVVIDERQKE-------------SL------------PEHENR 138 (213)
Q Consensus 84 k~ILV~vD~~~~~~S~~s~~Al~~A~~LA~~~~a~L~ll~V~~~~~~-------------~~------------~~~~~~ 138 (213)
++||||+| +|+.+..++++|..+|+..+++|+++|+.+.... .+ ...++.
T Consensus 1 k~ILv~vD-----~s~~s~~al~~A~~lA~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (268)
T 3ab8_A 1 MRILLATD-----GSPQARGAEALAEWLAYKLSAPLTVLFVVDTRLARIPELLDFGALTVPVPVLRTELERALALRGEAV 75 (268)
T ss_dssp CCEEEECC-----SCGGGHHHHHHHHHHHHHHTCCEEEEEEEEHHHHTHHHHC-------CHHHHHHHHHHHHHHHHHHH
T ss_pred CcEEEEcC-----CCHHHHHHHHHHHHHHHHhCCcEEEEEEeccCCcccccccCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58999999 8999999999999999999999999987542110 00 011223
Q ss_pred HHHHHHHHHhCCCCceeEEEEEcccCCchHHHHHHHHHHcCCcEEEEcccCCC-C-----CCchHHHHHhcCCCcEEEEc
Q 028129 139 LSSIRWHLSEGGFQEFRLLERLGEGSSKPTAIIGDVADELNLDLVIISMEAIH-S-----KHVDANLLAEFIPCPVLLLP 212 (213)
Q Consensus 139 l~~~~~~l~~~g~~~~~v~~~v~~G~~~p~~~Il~~A~e~~aDLIVmG~~g~~-~-----~Gs~~~~vl~~a~cPVLvVp 212 (213)
++++.+.+...|++ ++..+..|+ +.++|+++ +.++||||||++|++ . .|++...++++++||||+||
T Consensus 76 l~~~~~~~~~~g~~---~~~~~~~g~--~~~~I~~~--~~~~dliV~G~~g~~~~~~~~~~Gs~~~~v~~~a~~PVlvv~ 148 (268)
T 3ab8_A 76 LERVRQSALAAGVA---VEAVLEEGV--PHEAILRR--ARAADLLVLGRSGEAHGDGFGGLGSTADRVLRASPVPVLLAP 148 (268)
T ss_dssp HHHHHHHHHHTTCC---EEEEEEEEC--HHHHHHHH--HTTCSEEEEESSCTTSCTTCCSCCHHHHHHHHHCSSCEEEEC
T ss_pred HHHHHHHHHhCCCC---eEEEEecCC--HHHHHHhh--ccCCCEEEEeccCCCccccccccchhHHHHHHhCCCCEEEEC
Confidence 33444455567887 777777896 99999999 789999999999864 2 28899999999999999997
No 25
>3ih5_A Electron transfer flavoprotein alpha-subunit; alpha-beta-alpha sandwich, structural genomics, PSI-2, protein structure initiative; 2.60A {Bacteroides thetaiotaomicron}
Probab=95.48 E-value=0.035 Score=45.31 Aligned_cols=96 Identities=10% Similarity=0.083 Sum_probs=63.4
Q ss_pred CCcEEEEeeCCCCCCCHHHHHHHHHHHHHHhhcCCEEEEEEEeCCCCCChhhHHHHHHHHHHHHHhCCCCce-eEEEEEc
Q 028129 83 FKHLLLPITDQNPYLSEGTRQAAATTAALAKKYGADITVVVIDERQKESLPEHENRLSSIRWHLSEGGFQEF-RLLERLG 161 (213)
Q Consensus 83 ~k~ILV~vD~~~~~~S~~s~~Al~~A~~LA~~~~a~L~ll~V~~~~~~~~~~~~~~l~~~~~~l~~~g~~~~-~v~~~v~ 161 (213)
|++|||-.+.++....+.+.+++..|..|+...|.+++++.+.... . . ..+.+...|.... .+.....
T Consensus 3 m~~ilV~~E~~~g~l~~~s~ell~~A~~La~~~g~~v~av~~G~~~-~------~----~~~~~~~~Gad~v~~v~~~~~ 71 (217)
T 3ih5_A 3 ANNLFVYCEIEEGIVADVSLELLTKGRSLANELNCQLEAVVAGTGL-K------E----IEKQILPYGVDKLHVFDAEGL 71 (217)
T ss_dssp CCCEEEECCEETTEECHHHHHHHHHHHHHHHHHTCCEEEEEEESCC-T------T----THHHHGGGTCSEEEEEECGGG
T ss_pred cccEEEEEECcCCEECHHHHHHHHHHHHHHHhcCCeEEEEEECCCH-H------H----HHHHHHhcCCCEEEEecCccc
Confidence 6789998885433447889999999999999999999999887532 1 1 1122334476631 1111001
Q ss_pred ccC--CchHHHHHHHHHHcCCcEEEEcccC
Q 028129 162 EGS--SKPTAIIGDVADELNLDLVIISMEA 189 (213)
Q Consensus 162 ~G~--~~p~~~Il~~A~e~~aDLIVmG~~g 189 (213)
.+. ...+..|.+.++++++|+|++|+..
T Consensus 72 ~~~~~~~~a~~l~~~i~~~~p~~Vl~g~t~ 101 (217)
T 3ih5_A 72 YPYTSLPHTSILVNLFKEEQPQICLMGATV 101 (217)
T ss_dssp SSCCHHHHHHHHHHHHHHHCCSEEEEECSH
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 121 0145678899999999999999854
No 26
>2iel_A Hypothetical protein TT0030; TT0030,thermus thermophilus, structural genomics, PSI, protein structure initiative; 1.60A {Thermus thermophilus} SCOP: c.26.2.4
Probab=94.50 E-value=0.94 Score=34.31 Aligned_cols=118 Identities=15% Similarity=0.072 Sum_probs=72.1
Q ss_pred CcEEEEeeCCCCCCCHHHHHHHHHHHHHHhhcC-CEEEEEEEeCCC--CCC-h----hhHHHHHHHHHHHHHhCCCCcee
Q 028129 84 KHLLLPITDQNPYLSEGTRQAAATTAALAKKYG-ADITVVVIDERQ--KES-L----PEHENRLSSIRWHLSEGGFQEFR 155 (213)
Q Consensus 84 k~ILV~vD~~~~~~S~~s~~Al~~A~~LA~~~~-a~L~ll~V~~~~--~~~-~----~~~~~~l~~~~~~l~~~g~~~~~ 155 (213)
.+|||-+.. .-.+.........+..... +++.+|+--.+. +.. - ...++.++.....+...|+.
T Consensus 2 ~~vlVlae~-----tl~~~dl~~vl~~l~~~~~~~~f~VLVPa~~~~a~~~e~~~a~~~A~~~l~~sl~aL~~~G~~--- 73 (138)
T 2iel_A 2 ARYLVVAHR-----TAKSPELAAKLKELLAQDPEARFVLLVPAVPPPGWVYEENEVRRRAEEEAAAAKRALEAQGIP--- 73 (138)
T ss_dssp CEEEEECST-----TTTCHHHHHHHHHHHHHCTTCEEEEEEEEECCCCSCC--CHHHHHHHHHHHHHHHHHHTTTCC---
T ss_pred ceEEEEecC-----ccCcHhHHHHHHHhhcCCCceEEEEEecCCCCcccccChHHHHHHHHHHHHHHHHHHHHcCCc---
Confidence 567777772 3333333333356666554 777655322221 000 0 12445566666778888998
Q ss_pred EE-EEEcccCCchHHHHHHHHHHcC--CcEEEEcccCCCCCCchHHHH---HhcCCCcEEEE
Q 028129 156 LL-ERLGEGSSKPTAIIGDVADELN--LDLVIISMEAIHSKHVDANLL---AEFIPCPVLLL 211 (213)
Q Consensus 156 v~-~~v~~G~~~p~~~Il~~A~e~~--aDLIVmG~~g~~~~Gs~~~~v---l~~a~cPVLvV 211 (213)
+. ..+.+++ |..+|.+...+.+ +|=||+-+..+..+.....-. +++...||+=+
T Consensus 74 a~~G~v~d~~--Pl~AL~~~v~~~~~~~deiIV~T~Ph~vs~~fh~DwasrAr~~gvPVlhl 133 (138)
T 2iel_A 74 VEEAKAGDIS--PLLAIEEELLAHPGAYQGIVLSTLPPGLSRWLRLDVHTQAERFGLPVIHV 133 (138)
T ss_dssp CSEEEEEESS--HHHHHHHHHHHSTTSCSEEEEEECCTTTCHHHHTTHHHHGGGGSSCEEEE
T ss_pred ccccccCCCC--hHHHHHHHHHhcCCCCceEEEEcCCchHHHHHhccHHHHHHhcCCCEEEE
Confidence 66 6777675 9999999999999 999999998762121111111 66688998743
No 27
>1o97_C Electron transferring flavoprotein beta-subunit; FAD binding; HET: AMP FAD; 1.6A {Methylophilus methylotrophus} SCOP: c.26.2.3 PDB: 1o95_C* 1o96_A* 1o94_C* 3clr_C* 3cls_C* 3clt_C* 3clu_C*
Probab=92.62 E-value=0.34 Score=40.61 Aligned_cols=99 Identities=16% Similarity=0.216 Sum_probs=62.2
Q ss_pred CCHHHHHHHHHHHHHHhhcCC--EEEEEEEeCCCCCChhhHHHHHHHHHHHHHhCCCCceeEEEEEc----ccCCc---h
Q 028129 97 LSEGTRQAAATTAALAKKYGA--DITVVVIDERQKESLPEHENRLSSIRWHLSEGGFQEFRLLERLG----EGSSK---P 167 (213)
Q Consensus 97 ~S~~s~~Al~~A~~LA~~~~a--~L~ll~V~~~~~~~~~~~~~~l~~~~~~l~~~g~~~~~v~~~v~----~G~~~---p 167 (213)
.++.+..|++.|.+|+.+.|. +++++.+.... .++.+.. . ...|.+. ...+. .|. + .
T Consensus 35 lnp~d~~ale~A~~Lke~~g~~~~V~av~~G~~~------~~~~lr~---a-la~GaD~---vi~v~d~~~~~~-~~~~~ 100 (264)
T 1o97_C 35 LNEWDDFSLEEAMKIKESSDTDVEVVVVSVGPDR------VDESLRK---C-LAKGADR---AVRVWDDAAEGS-DAIVV 100 (264)
T ss_dssp ECHHHHHHHHHHHHHHHHCSSCCEEEEEEESCGG------GHHHHHH---H-HHTTCSE---EEEECCGGGTTC-CHHHH
T ss_pred cCHHHHHHHHHHHHHHHhcCCCceEEEEEeCchh------HHHHHHH---H-HhcCCCE---EEEEcCcccccC-CHHHH
Confidence 467888999999999987776 89888877521 2222222 2 3347762 22221 122 2 2
Q ss_pred HHHHHHHHHHcCCcEEEEcccCCC-CCCchHHHHHhcCCCcEE
Q 028129 168 TAIIGDVADELNLDLVIISMEAIH-SKHVDANLLAEFIPCPVL 209 (213)
Q Consensus 168 ~~~Il~~A~e~~aDLIVmG~~g~~-~~Gs~~~~vl~~a~cPVL 209 (213)
+..|.+.+++.++|+|++|..... .++-..-.++.....|.+
T Consensus 101 a~~La~~i~~~~~dlVl~G~~s~d~~~~~v~p~lA~~L~~~~v 143 (264)
T 1o97_C 101 GRILTEVIKKEAPDMVFAGVQSSDQAYASTGISVASYLNWPHA 143 (264)
T ss_dssp HHHHHHHHHHHCCSEEEEESCCTTTCCCCHHHHHHHHHTCCEE
T ss_pred HHHHHHHHHhcCCCEEEEcCCccCCchhhHHHHHHHHhCCCcc
Confidence 347778888889999999997642 135566666655555544
No 28
>1efv_B Electron transfer flavoprotein; electron transport, glutaric acidemia type II; HET: FAD AMP; 2.10A {Homo sapiens} SCOP: c.26.2.3 PDB: 1t9g_S* 2a1u_B* 2a1t_S*
Probab=92.55 E-value=2.8 Score=34.77 Aligned_cols=98 Identities=18% Similarity=0.264 Sum_probs=61.0
Q ss_pred CCHHHHHHHHHHHHHHhhcCC--EEEEEEEeCCCCCChhhHHHHHHHHHHHHHhCCCCceeEEEEEc------ccCCch-
Q 028129 97 LSEGTRQAAATTAALAKKYGA--DITVVVIDERQKESLPEHENRLSSIRWHLSEGGFQEFRLLERLG------EGSSKP- 167 (213)
Q Consensus 97 ~S~~s~~Al~~A~~LA~~~~a--~L~ll~V~~~~~~~~~~~~~~l~~~~~~l~~~g~~~~~v~~~v~------~G~~~p- 167 (213)
..+.+..|++.|.+|..+ |. +++++.+.... .++.+... +. .|.+. ...+. .|. ++
T Consensus 38 lnp~d~~Ale~A~~Lke~-g~~~~V~av~~G~~~------a~~~lr~a---la-~GaD~---vi~v~~d~~~~~~~-~~~ 102 (255)
T 1efv_B 38 MNPFCEIAVEEAVRLKEK-KLVKEVIAVSCGPAQ------CQETIRTA---LA-MGADR---GIHVEVPPAEAERL-GPL 102 (255)
T ss_dssp ECHHHHHHHHHHHHHHHT-TSCSEEEEEEEESTT------HHHHHHHH---HH-HTCSE---EEEEECCHHHHTTC-CHH
T ss_pred CCHHHHHHHHHHHHHHhc-CCCceEEEEEeCChh------HHHHHHHH---Hh-cCCCE---EEEEecChhhcccC-CHH
Confidence 356778999999999876 66 89998887632 22223222 22 27662 22221 132 23
Q ss_pred --HHHHHHHHHHcCCcEEEEcccCCC-CCCchHHHHHhcCCCcEE
Q 028129 168 --TAIIGDVADELNLDLVIISMEAIH-SKHVDANLLAEFIPCPVL 209 (213)
Q Consensus 168 --~~~Il~~A~e~~aDLIVmG~~g~~-~~Gs~~~~vl~~a~cPVL 209 (213)
+..|.+.+++.++|+|++|..... .++-....++.....|.+
T Consensus 103 ~~A~~La~~i~~~~~dlVl~G~~s~d~d~~~v~p~lA~~L~~~~v 147 (255)
T 1efv_B 103 QVARVLAKLAEKEKVDLVLLGKQAIDDDCNQTGQMTAGFLDWPQG 147 (255)
T ss_dssp HHHHHHHHHHHHHTCSEEEEESCCTTTCCCCHHHHHHHHHTCCEE
T ss_pred HHHHHHHHHHHhcCCCEEEEeCcccCCchhhHHHHHHHHhCCCcc
Confidence 346778888889999999997642 135566666655555543
No 29
>1efp_B ETF, protein (electron transfer flavoprotein); electron transport, glutaric acidemia type II; HET: FAD AMP; 2.60A {Paracoccus denitrificans} SCOP: c.26.2.3
Probab=91.41 E-value=2.7 Score=34.78 Aligned_cols=101 Identities=20% Similarity=0.245 Sum_probs=60.5
Q ss_pred CCHHHHHHHHHHHHHHhhcCC--EEEEEEEeCCCCCChhhHHHHHHHHHHHHHhCCCCc-eeEE-EEEc-ccCCc---hH
Q 028129 97 LSEGTRQAAATTAALAKKYGA--DITVVVIDERQKESLPEHENRLSSIRWHLSEGGFQE-FRLL-ERLG-EGSSK---PT 168 (213)
Q Consensus 97 ~S~~s~~Al~~A~~LA~~~~a--~L~ll~V~~~~~~~~~~~~~~l~~~~~~l~~~g~~~-~~v~-~~v~-~G~~~---p~ 168 (213)
.++.+..|++.|.+|..+ |. +++++.+.... .++.+... +. .|.+. |.+. .... .|. + .+
T Consensus 35 lnp~d~~Ale~A~~Lke~-g~~~~V~av~~G~~~------a~~~lr~a---la-~GaD~vi~v~~d~~~~~~~-~~~~~a 102 (252)
T 1efp_B 35 MNPFDEIAVEEAIRLKEK-GQAEEIIAVSIGVKQ------AAETLRTA---LA-MGADRAILVVAADDVQQDI-EPLAVA 102 (252)
T ss_dssp ECHHHHHHHHHHHHHHTT-TSCSEEEEEEEESGG------GHHHHHHH---HH-HTCSEEEEEECCSSTTCCC-CHHHHH
T ss_pred CCHHHHHHHHHHHHHHhc-CCCceEEEEEeCChh------HHHHHHHH---Hh-cCCCEEEEEecChhhcccC-CHHHHH
Confidence 467788999999999876 66 89988887522 22223222 22 26663 1121 1100 132 2 33
Q ss_pred HHHHHHHHHcCCcEEEEcccCCC-CCCchHHHHHhcCCCcEE
Q 028129 169 AIIGDVADELNLDLVIISMEAIH-SKHVDANLLAEFIPCPVL 209 (213)
Q Consensus 169 ~~Il~~A~e~~aDLIVmG~~g~~-~~Gs~~~~vl~~a~cPVL 209 (213)
..|.+.+++.++|+|++|..... .++-....++.....|.+
T Consensus 103 ~~La~~i~~~~~dlVl~G~~s~d~~~~~v~p~lA~~L~~~~v 144 (252)
T 1efp_B 103 KILAAVARAEGTELIIAGKQAIDNDMNATGQMLAAILGWAQA 144 (252)
T ss_dssp HHHHHHHHHHTCSEEEEESCCTTTCCCCHHHHHHHHHTCEEE
T ss_pred HHHHHHHHhcCCCEEEEcCCccCCchhhHHHHHHHHhCCCcc
Confidence 46777888889999999997642 135566666555555543
No 30
>1wy5_A TILS, hypothetical UPF0072 protein AQ_1887; N-type ATP-ppase, structural genomics, translation, NPPSFA; 2.42A {Aquifex aeolicus} SCOP: c.26.2.5 d.229.1.1 PDB: 2e21_A* 2e89_A*
Probab=91.01 E-value=2.8 Score=35.53 Aligned_cols=96 Identities=6% Similarity=0.090 Sum_probs=62.3
Q ss_pred CCCcEEEEeeCCCCCCCHHHHHHHHHHHHHHhhcCCE-EEEEEEeCCCCCChhhHHHHHHHHHHHHHhCCCCceeEEEEE
Q 028129 82 NFKHLLLPITDQNPYLSEGTRQAAATTAALAKKYGAD-ITVVVIDERQKESLPEHENRLSSIRWHLSEGGFQEFRLLERL 160 (213)
Q Consensus 82 ~~k~ILV~vD~~~~~~S~~s~~Al~~A~~LA~~~~a~-L~ll~V~~~~~~~~~~~~~~l~~~~~~l~~~g~~~~~v~~~v 160 (213)
.-++|+|++. |..+|.-++..+..+.+..|.+ +.+++++..... +.....+.+++.....|++ +...-
T Consensus 23 ~~~~vlva~S-----GG~DS~~Ll~ll~~~~~~~g~~~v~av~vd~g~r~---~s~~~~~~v~~~a~~lgi~---~~v~~ 91 (317)
T 1wy5_A 23 GERRVLIAFS-----GGVDSVVLTDVLLKLKNYFSLKEVALAHFNHMLRE---SAERDEEFCKEFAKERNMK---IFVGK 91 (317)
T ss_dssp SCCEEEEECC-----SSHHHHHHHHHHHHSTTTTTCSEEEEEEEECCSST---HHHHHHHHHHHHHHHHTCC---EEEEE
T ss_pred CCCEEEEEec-----chHHHHHHHHHHHHHHHHcCCCEEEEEEEECCCCc---ccHHHHHHHHHHHHHcCCc---EEEEE
Confidence 3468999999 8888888888777766666777 999999875431 1222334444445555776 22211
Q ss_pred c--------ccCCchH--------HHHHHHHHHcCCcEEEEcccC
Q 028129 161 G--------EGSSKPT--------AIIGDVADELNLDLVIISMEA 189 (213)
Q Consensus 161 ~--------~G~~~p~--------~~Il~~A~e~~aDLIVmG~~g 189 (213)
. .|. ++. ..+.++|+++++|.|+.|++.
T Consensus 92 ~~~~~~~~~~~~-~~e~~ar~~Ry~~l~~~a~~~g~~~i~~Gh~~ 135 (317)
T 1wy5_A 92 EDVRAFAKENRM-SLEEAGRFLRYKFLKEILESEGFDCIATAHHL 135 (317)
T ss_dssp CCHHHHHHHTTC-CHHHHHHHHHHHHHHHHHHHTTCSEEECCCCH
T ss_pred EechhhhccCCC-CHHHHHHHHHHHHHHHHHHHcCCCEEEEeCch
Confidence 1 121 111 356677899999999999974
No 31
>4b4k_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase; 2.50A {Bacillus anthracis}
Probab=90.75 E-value=2.6 Score=33.30 Aligned_cols=70 Identities=14% Similarity=0.133 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHhCCCCceeEEEEEcccCCchHHHHHHHH---HHcCCcEEEEcccCCCCCCchHHHHHhcCCCcEEEEcC
Q 028129 137 NRLSSIRWHLSEGGFQEFRLLERLGEGSSKPTAIIGDVA---DELNLDLVIISMEAIHSKHVDANLLAEFIPCPVLLLPL 213 (213)
Q Consensus 137 ~~l~~~~~~l~~~g~~~~~v~~~v~~G~~~p~~~Il~~A---~e~~aDLIVmG~~g~~~~Gs~~~~vl~~a~cPVLvVp~ 213 (213)
..+++..+.+++.|++ ++..+..-. ...+.+.+|+ ++.+++.||.|+-+- +--.-.++..+..||+-||.
T Consensus 36 ~v~~~a~~~L~~~gI~---~e~~V~SAH-Rtp~~l~~~~~~a~~~g~~ViIa~AG~a---ahLpGvvAa~T~~PVIGVPv 108 (181)
T 4b4k_A 36 ETMKYACDILDELNIP---YEKKVVSAH-RTPDYMFEYAETARERGLKVIIAGAGGA---AHLPGMVAAKTNLPVIGVPV 108 (181)
T ss_dssp HHHHHHHHHHHHTTCC---EEEEECCTT-TSHHHHHHHHHHTTTTTCCEEEEEECSS---CCHHHHHHTTCCSCEEEEEC
T ss_pred HHHHHHHHHHHHcCCC---eeEEEEccc-cChHHHHHHHHHHHhcCceEEEEecccc---ccchhhHHhcCCCCEEEEec
Confidence 4466777778888988 666665555 4555566665 456889999988654 33444568889999998874
No 32
>4grd_A N5-CAIR mutase, phosphoribosylaminoimidazole carboxylase catalyti; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures; 1.85A {Burkholderia cenocepacia}
Probab=90.59 E-value=2.3 Score=33.39 Aligned_cols=69 Identities=20% Similarity=0.153 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHhCCCCceeEEEEEcccCCchHHHHHHHH---HHcCCcEEEEcccCCCCCCchHHHHHhcCCCcEEEEc
Q 028129 137 NRLSSIRWHLSEGGFQEFRLLERLGEGSSKPTAIIGDVA---DELNLDLVIISMEAIHSKHVDANLLAEFIPCPVLLLP 212 (213)
Q Consensus 137 ~~l~~~~~~l~~~g~~~~~v~~~v~~G~~~p~~~Il~~A---~e~~aDLIVmG~~g~~~~Gs~~~~vl~~a~cPVLvVp 212 (213)
..+++....+++.|++ ++..+..-. ...+.+.+|+ ++.+++.||.|+-+. +--.-.+...+.+||+-||
T Consensus 26 ~v~~~a~~~l~~~gi~---~ev~V~saH-R~p~~l~~~~~~a~~~g~~ViIa~AG~a---ahLpgvvA~~t~~PVIgVP 97 (173)
T 4grd_A 26 DVMKHAVAILQEFGVP---YEAKVVSAH-RMPDEMFDYAEKARERGLRAIIAGAGGA---AHLPGMLAAKTTVPVLGVP 97 (173)
T ss_dssp HHHHHHHHHHHHTTCC---EEEEECCTT-TSHHHHHHHHHHHTTTTCSEEEEEEESS---CCHHHHHHHHCCSCEEEEE
T ss_pred HHHHHHHHHHHHcCCC---EEEEEEccc-cCHHHHHHHHHHHHhcCCeEEEEecccc---ccchhhheecCCCCEEEEE
Confidence 3456666777888888 666665444 4555555555 446889888888654 3444456788899998887
No 33
>3a2k_A TRNA(Ile)-lysidine synthase; ligase, pseudo-knot, ligase/RNA complex; 3.65A {Geobacillus kaustophilus}
Probab=90.29 E-value=3.5 Score=36.96 Aligned_cols=99 Identities=7% Similarity=0.091 Sum_probs=66.6
Q ss_pred CCcEEEEeeCCCCCCCHHHHHHHHHHHHHHhhcCCEEEEEEEeCCCCCChhhHHHHHHHHHHHHHhCCCCceeEEEE-E-
Q 028129 83 FKHLLLPITDQNPYLSEGTRQAAATTAALAKKYGADITVVVIDERQKESLPEHENRLSSIRWHLSEGGFQEFRLLER-L- 160 (213)
Q Consensus 83 ~k~ILV~vD~~~~~~S~~s~~Al~~A~~LA~~~~a~L~ll~V~~~~~~~~~~~~~~l~~~~~~l~~~g~~~~~v~~~-v- 160 (213)
-++|+|++. |...|..++.....+....+.++.++|++..... ++.+...+.+++.....|++ +.+... +
T Consensus 18 ~~~vlVa~S-----GG~DS~~Ll~ll~~~~~~~~~~v~avhvdhglrg--~~s~~~~~~v~~~~~~lgi~-~~v~~~~~~ 89 (464)
T 3a2k_A 18 GAAVIVGVS-----GGPDSLALLHVFLSLRDEWKLQVIAAHVDHMFRG--RESEEEMEFVKRFCVERRIL-CETAQIDVP 89 (464)
T ss_dssp SSBEEEECC-----SSHHHHHHHHHHHHHHHTTTCBCEEEEEECTTCT--HHHHHHHHHHHHHHHHTTCE-EEEEECCCH
T ss_pred CCEEEEEEc-----CcHHHHHHHHHHHHHHHHcCCeEEEEEEECCCCc--cccHHHHHHHHHHHHHcCCc-EEEEEechh
Confidence 468999999 8999998888888888777889999999875431 12223344555566667876 222211 1
Q ss_pred ----cccCCch--------HHHHHHHHHHcCCcEEEEcccCC
Q 028129 161 ----GEGSSKP--------TAIIGDVADELNLDLVIISMEAI 190 (213)
Q Consensus 161 ----~~G~~~p--------~~~Il~~A~e~~aDLIVmG~~g~ 190 (213)
..|. .+ ...+.++|+++++|.|+.|++..
T Consensus 90 ~~~~~~~~-~~e~~aR~~Ry~~l~~~a~~~g~~~IatgH~~d 130 (464)
T 3a2k_A 90 AFQRSAGL-GAQEAARICRYRFFAELMEKHQAGYVAVGHHGD 130 (464)
T ss_dssp HHHTTTTC-CSHHHHHHHHHHHHHHHHHTTTCCEEECCCCHH
T ss_pred hhhhccCC-CHHHHHHHHHHHHHHHHHHHcCcCEEEEeCChH
Confidence 1121 11 25566788999999999999753
No 34
>2ywx_A Phosphoribosylaminoimidazole carboxylase catalyti; rossmann fold, structural genomics, NPPSFA; 2.31A {Methanocaldococcus jannaschii}
Probab=89.91 E-value=3.2 Score=32.10 Aligned_cols=70 Identities=14% Similarity=0.214 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHhCCCCceeEEEEEcccCCchHHHHHHHHHHcCCcEEEEcccCCCCCCchHHHHHhcCCCcEEEEcC
Q 028129 137 NRLSSIRWHLSEGGFQEFRLLERLGEGSSKPTAIIGDVADELNLDLVIISMEAIHSKHVDANLLAEFIPCPVLLLPL 213 (213)
Q Consensus 137 ~~l~~~~~~l~~~g~~~~~v~~~v~~G~~~p~~~Il~~A~e~~aDLIVmG~~g~~~~Gs~~~~vl~~a~cPVLvVp~ 213 (213)
..++++...+++.|++ ++..+..-. ...+.+.+|+++.+.+.||.++-+. +--.-.+...+++||+-||.
T Consensus 13 ~v~~~a~~~l~~~gi~---~dv~V~saH-R~p~~~~~~~~~a~~~ViIa~AG~a---a~Lpgvva~~t~~PVIgVP~ 82 (157)
T 2ywx_A 13 KIAEKAVNILKEFGVE---FEVRVASAH-RTPELVEEIVKNSKADVFIAIAGLA---AHLPGVVASLTTKPVIAVPV 82 (157)
T ss_dssp HHHHHHHHHHHHTTCC---EEEEECCTT-TCHHHHHHHHHHCCCSEEEEEEESS---CCHHHHHHTTCSSCEEEEEE
T ss_pred HHHHHHHHHHHHcCCC---eEEEEEccc-CCHHHHHHHHHhcCCCEEEEEcCch---hhhHHHHHhccCCCEEEecC
Confidence 3456666778888998 666666555 6778889999877679999888664 44555678889999998873
No 35
>3trh_A Phosphoribosylaminoimidazole carboxylase carboxyltransferase subunit; purines, pyrimidines, nucleosides, nucleotides, lyase; 2.20A {Coxiella burnetii}
Probab=88.99 E-value=3.3 Score=32.41 Aligned_cols=70 Identities=14% Similarity=0.124 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHhCCCCceeEEEEEcccCCchHHHHHHH---HHHcCCcEEEEcccCCCCCCchHHHHHhcCCCcEEEEcC
Q 028129 137 NRLSSIRWHLSEGGFQEFRLLERLGEGSSKPTAIIGDV---ADELNLDLVIISMEAIHSKHVDANLLAEFIPCPVLLLPL 213 (213)
Q Consensus 137 ~~l~~~~~~l~~~g~~~~~v~~~v~~G~~~p~~~Il~~---A~e~~aDLIVmG~~g~~~~Gs~~~~vl~~a~cPVLvVp~ 213 (213)
..++++...+++.|++ ++..+..-. ...+.+.+| +++.+++.||.++-+. +--.-.+...+++||+-||.
T Consensus 20 ~v~~~a~~~l~~~gi~---~ev~V~SaH-R~p~~~~~~~~~a~~~g~~ViIa~AG~a---a~LpgvvA~~t~~PVIgVP~ 92 (169)
T 3trh_A 20 STMETAFTELKSLGIP---FEAHILSAH-RTPKETVEFVENADNRGCAVFIAAAGLA---AHLAGTIAAHTLKPVIGVPM 92 (169)
T ss_dssp HHHHHHHHHHHHTTCC---EEEEECCTT-TSHHHHHHHHHHHHHTTEEEEEEEECSS---CCHHHHHHHTCSSCEEEEEC
T ss_pred HHHHHHHHHHHHcCCC---EEEEEEccc-CCHHHHHHHHHHHHhCCCcEEEEECChh---hhhHHHHHhcCCCCEEEeec
Confidence 3456666677888888 666665444 444555555 4557889888877653 44455578888999998874
No 36
>3kuu_A Phosphoribosylaminoimidazole carboxylase catalyti PURE; 3-layer (ABA) sandwich, rossmann fold, csgid, lyase, structu genomics; 1.41A {Yersinia pestis} SCOP: c.23.8.1 PDB: 1d7a_A* 1qcz_A 2ate_A* 2nsl_A* 2nsh_A* 2nsj_A*
Probab=88.67 E-value=4.2 Score=31.95 Aligned_cols=69 Identities=14% Similarity=0.086 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHhCCCCceeEEEEEcccCCchHHHHHHHHH---HcCCcEEEEcccCCCCCCchHHHHHhcCCCcEEEEc
Q 028129 137 NRLSSIRWHLSEGGFQEFRLLERLGEGSSKPTAIIGDVAD---ELNLDLVIISMEAIHSKHVDANLLAEFIPCPVLLLP 212 (213)
Q Consensus 137 ~~l~~~~~~l~~~g~~~~~v~~~v~~G~~~p~~~Il~~A~---e~~aDLIVmG~~g~~~~Gs~~~~vl~~a~cPVLvVp 212 (213)
..++++...+++.|++ ++..+..-. ...+.+.+|++ +.+++.||.++-+. +--.-.+...+++||+-||
T Consensus 26 ~v~~~a~~~L~~~Gi~---~ev~V~SaH-R~p~~~~~~~~~a~~~g~~ViIa~AG~a---a~LpgvvA~~t~~PVIgVP 97 (174)
T 3kuu_A 26 ATMQFAADVLTTLNVP---FHVEVVSAH-RTPDRLFSFAEQAEANGLHVIIAGNGGA---AHLPGMLAAKTLVPVLGVP 97 (174)
T ss_dssp HHHHHHHHHHHHTTCC---EEEEECCTT-TCHHHHHHHHHHTTTTTCSEEEEEEESS---CCHHHHHHHTCSSCEEEEE
T ss_pred HHHHHHHHHHHHcCCC---EEEEEEccc-CCHHHHHHHHHHHHhCCCcEEEEECChh---hhhHHHHHhccCCCEEEee
Confidence 3456666677788888 666665444 45566666654 46788888877653 3444556788888988877
No 37
>1xmp_A PURE, phosphoribosylaminoimidazole carboxylase; purine biosynthesis, spine, lyase; 1.80A {Bacillus anthracis} SCOP: c.23.8.1
Probab=88.49 E-value=4.6 Score=31.62 Aligned_cols=69 Identities=13% Similarity=0.122 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHhCCCCceeEEEEEcccCCchHHHHHHHHHH---cCCcEEEEcccCCCCCCchHHHHHhcCCCcEEEEc
Q 028129 137 NRLSSIRWHLSEGGFQEFRLLERLGEGSSKPTAIIGDVADE---LNLDLVIISMEAIHSKHVDANLLAEFIPCPVLLLP 212 (213)
Q Consensus 137 ~~l~~~~~~l~~~g~~~~~v~~~v~~G~~~p~~~Il~~A~e---~~aDLIVmG~~g~~~~Gs~~~~vl~~a~cPVLvVp 212 (213)
..++++...+++.|++ ++..+..-. ...+.+.+|+++ .+++.||.++-+. +--.-.+...+++||+-||
T Consensus 25 ~v~~~a~~~L~~~Gi~---~dv~V~SaH-R~p~~l~~~~~~a~~~g~~ViIa~AG~a---a~LpgvvA~~t~~PVIgVP 96 (170)
T 1xmp_A 25 ETMKYACDILDELNIP---YEKKVVSAH-RTPDYMFEYAETARERGLKVIIAGAGGA---AHLPGMVAAKTNLPVIGVP 96 (170)
T ss_dssp HHHHHHHHHHHHTTCC---EEEEECCTT-TSHHHHHHHHHHTTTTTCCEEEEEEESS---CCHHHHHHTTCCSCEEEEE
T ss_pred HHHHHHHHHHHHcCCC---EEEEEEecc-CCHHHHHHHHHHHHhCCCcEEEEECCch---hhhHHHHHhccCCCEEEee
Confidence 3456666777888988 666665444 455666777654 4688888888654 4445557888999999887
No 38
>3oow_A Phosphoribosylaminoimidazole carboxylase,catalyic; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.75A {Francisella tularensis subsp} SCOP: c.23.8.1 PDB: 3opq_A*
Probab=88.09 E-value=4.7 Score=31.41 Aligned_cols=70 Identities=16% Similarity=0.133 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHhCCCCceeEEEEEcccCCchHHHHHHHHHH---cCCcEEEEcccCCCCCCchHHHHHhcCCCcEEEEcC
Q 028129 137 NRLSSIRWHLSEGGFQEFRLLERLGEGSSKPTAIIGDVADE---LNLDLVIISMEAIHSKHVDANLLAEFIPCPVLLLPL 213 (213)
Q Consensus 137 ~~l~~~~~~l~~~g~~~~~v~~~v~~G~~~p~~~Il~~A~e---~~aDLIVmG~~g~~~~Gs~~~~vl~~a~cPVLvVp~ 213 (213)
..++++...+++.|+. ++..+..-. ...+.+.+|+++ .+++.||.++-+. +--.-.+...+++||+-||.
T Consensus 19 ~v~~~a~~~l~~~gi~---~ev~V~SaH-Rtp~~l~~~~~~~~~~g~~ViIa~AG~a---a~LpgvvA~~t~~PVIgVP~ 91 (166)
T 3oow_A 19 STMKECCDILDNLGIG---YECEVVSAH-RTPDKMFDYAETAKERGLKVIIAGAGGA---AHLPGMVAAKTTLPVLGVPV 91 (166)
T ss_dssp HHHHHHHHHHHHTTCE---EEEEECCTT-TCHHHHHHHHHHTTTTTCCEEEEEECSS---CCHHHHHHHTCSSCEEEEEC
T ss_pred HHHHHHHHHHHHcCCC---EEEEEEcCc-CCHHHHHHHHHHHHhCCCcEEEEECCcc---hhhHHHHHhccCCCEEEeec
Confidence 3456666677788887 666665444 455667777654 4678888888653 44455578888999988874
No 39
>3ors_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase, isomerase,biosynthetic protein; 1.45A {Staphylococcus aureus subsp}
Probab=87.44 E-value=5.3 Score=31.05 Aligned_cols=69 Identities=12% Similarity=0.150 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHhCCCCceeEEEEEcccCCchHHHHHHHHH---HcCCcEEEEcccCCCCCCchHHHHHhcCCCcEEEEc
Q 028129 137 NRLSSIRWHLSEGGFQEFRLLERLGEGSSKPTAIIGDVAD---ELNLDLVIISMEAIHSKHVDANLLAEFIPCPVLLLP 212 (213)
Q Consensus 137 ~~l~~~~~~l~~~g~~~~~v~~~v~~G~~~p~~~Il~~A~---e~~aDLIVmG~~g~~~~Gs~~~~vl~~a~cPVLvVp 212 (213)
..++++...+++.|++ ++..+..-. ...+.+.+|++ +.+++.||.++-+. +--.-.+...+++||+-||
T Consensus 17 ~v~~~a~~~l~~~gi~---~ev~V~SaH-R~p~~~~~~~~~a~~~g~~ViIa~AG~a---a~LpgvvA~~t~~PVIgVP 88 (163)
T 3ors_A 17 KIMQESCNMLDYFEIP---YEKQVVSAH-RTPKMMVQFASEARERGINIIIAGAGGA---AHLPGMVASLTTLPVIGVP 88 (163)
T ss_dssp HHHHHHHHHHHHTTCC---EEEEECCTT-TSHHHHHHHHHHTTTTTCCEEEEEEESS---CCHHHHHHHHCSSCEEEEE
T ss_pred HHHHHHHHHHHHcCCC---EEEEEECCc-CCHHHHHHHHHHHHhCCCcEEEEECCch---hhhHHHHHhccCCCEEEee
Confidence 3466667778888988 666665444 45566666654 45789888888654 3444556788999999887
No 40
>3lp6_A Phosphoribosylaminoimidazole carboxylase catalyti; alpha and beta protein, structural genomics, PSI-2, protein initiative; 1.70A {Mycobacterium tuberculosis} SCOP: c.23.8.0
Probab=86.90 E-value=4.9 Score=31.58 Aligned_cols=69 Identities=16% Similarity=0.163 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHhCCCCceeEEEEEcccCCchHHHHHHH---HHHcCCcEEEEcccCCCCCCchHHHHHhcCCCcEEEEc
Q 028129 137 NRLSSIRWHLSEGGFQEFRLLERLGEGSSKPTAIIGDV---ADELNLDLVIISMEAIHSKHVDANLLAEFIPCPVLLLP 212 (213)
Q Consensus 137 ~~l~~~~~~l~~~g~~~~~v~~~v~~G~~~p~~~Il~~---A~e~~aDLIVmG~~g~~~~Gs~~~~vl~~a~cPVLvVp 212 (213)
..++++...+++.|++ ++..+..-. ...+.+.+| +++.+++.||.++-+. +--.-.+...+++||+-||
T Consensus 21 ~v~~~a~~~L~~~gi~---~ev~V~SaH-R~p~~~~~~~~~a~~~g~~ViIa~AG~a---a~LpgvvA~~t~~PVIgVP 92 (174)
T 3lp6_A 21 PVMADAAAALAEFDIP---AEVRVVSAH-RTPEAMFSYARGAAARGLEVIIAGAGGA---AHLPGMVAAATPLPVIGVP 92 (174)
T ss_dssp HHHHHHHHHHHHTTCC---EEEEECCTT-TCHHHHHHHHHHHHHHTCCEEEEEEESS---CCHHHHHHHHCSSCEEEEE
T ss_pred HHHHHHHHHHHHcCCC---EEEEEECCC-CCHHHHHHHHHHHHhCCCCEEEEecCch---hhhHHHHHhccCCCEEEee
Confidence 3456666777888888 555554443 344455555 5567889888888654 3444556778899998887
No 41
>1u11_A PURE (N5-carboxyaminoimidazole ribonucleotide MUT; acidophIle, protein stability, lyase; HET: CIT; 1.55A {Acetobacter aceti} SCOP: c.23.8.1 PDB: 2fwj_A* 2fw1_A* 2fwb_A 2fwa_A 2fw9_A 2fw7_A 2fw6_A 2fwp_A* 2fwi_A* 2fw8_A
Probab=86.89 E-value=5.5 Score=31.47 Aligned_cols=69 Identities=16% Similarity=0.159 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHhCCCCceeEEEEEcccCCchHHHHHHHHHH---cCCcEEEEcccCCCCCCchHHHHHhcCCCcEEEEc
Q 028129 137 NRLSSIRWHLSEGGFQEFRLLERLGEGSSKPTAIIGDVADE---LNLDLVIISMEAIHSKHVDANLLAEFIPCPVLLLP 212 (213)
Q Consensus 137 ~~l~~~~~~l~~~g~~~~~v~~~v~~G~~~p~~~Il~~A~e---~~aDLIVmG~~g~~~~Gs~~~~vl~~a~cPVLvVp 212 (213)
..++++...+++.|++ ++..+..-. ...+.+.+|+++ .+++.||.++-+. +--.-.+...+++||+-||
T Consensus 35 ~v~~~a~~~L~~~Gi~---~dv~V~SaH-R~p~~l~~~~~~a~~~g~~ViIa~AG~a---a~LpgvvA~~t~~PVIgVP 106 (182)
T 1u11_A 35 ETMRHADALLTELEIP---HETLIVSAH-RTPDRLADYARTAAERGLNVIIAGAGGA---AHLPGMCAAWTRLPVLGVP 106 (182)
T ss_dssp HHHHHHHHHHHHTTCC---EEEEECCTT-TCHHHHHHHHHHTTTTTCCEEEEEEESS---CCHHHHHHHHCSSCEEEEE
T ss_pred HHHHHHHHHHHHcCCC---eEEEEEccc-CCHHHHHHHHHHHHhCCCcEEEEecCch---hhhHHHHHhccCCCEEEee
Confidence 3456666677788888 665665444 455666777654 4688888887654 3444556778889998887
No 42
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=86.87 E-value=6.1 Score=27.80 Aligned_cols=63 Identities=10% Similarity=0.064 Sum_probs=35.3
Q ss_pred HHHHHHHHhCCCCceeEEEEEcccCCchHHHHHHHHHHcCCcEEEEcccCCCCCCchHHHHHhc----CCCcEEEE
Q 028129 140 SSIRWHLSEGGFQEFRLLERLGEGSSKPTAIIGDVADELNLDLVIISMEAIHSKHVDANLLAEF----IPCPVLLL 211 (213)
Q Consensus 140 ~~~~~~l~~~g~~~~~v~~~v~~G~~~p~~~Il~~A~e~~aDLIVmG~~g~~~~Gs~~~~vl~~----a~cPVLvV 211 (213)
+.+...+...|+. +.. . . -.++.++..++.++|+||+...-....|..-..-+++ ..+||+++
T Consensus 20 ~~l~~~l~~~g~~---v~~-~--~---~~~~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~~~ii~~ 86 (140)
T 3grc_A 20 RLLNLMLEKGGFD---SDM-V--H---SAAQALEQVARRPYAAMTVDLNLPDQDGVSLIRALRRDSRTRDLAIVVV 86 (140)
T ss_dssp HHHHHHHHHTTCE---EEE-E--C---SHHHHHHHHHHSCCSEEEECSCCSSSCHHHHHHHHHTSGGGTTCEEEEE
T ss_pred HHHHHHHHHCCCe---EEE-E--C---CHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhCcccCCCCEEEE
Confidence 3444455556655 532 2 1 2345556667788999999876432245443333433 56788775
No 43
>2lpm_A Two-component response regulator; transcription regulator; NMR {Sinorhizobium meliloti}
Probab=86.36 E-value=0.47 Score=34.91 Aligned_cols=78 Identities=15% Similarity=0.150 Sum_probs=48.0
Q ss_pred EEEEEEEeCCCCCChhhHHHHHHHHHHHHHhCCCCceeEEEEEcccCCchHHHHHHHHHHcCCcEEEEcccCCCCCCchH
Q 028129 118 DITVVVIDERQKESLPEHENRLSSIRWHLSEGGFQEFRLLERLGEGSSKPTAIIGDVADELNLDLVIISMEAIHSKHVDA 197 (213)
Q Consensus 118 ~L~ll~V~~~~~~~~~~~~~~l~~~~~~l~~~g~~~~~v~~~v~~G~~~p~~~Il~~A~e~~aDLIVmG~~g~~~~Gs~~ 197 (213)
++.+|.|++..... +.+...+.+.|++ +.... . -+++-++.+++..+|+|++--+=...+|...
T Consensus 8 ~~rILiVdD~~~~~--------~~l~~~L~~~G~~---v~~~a--~---~g~eAl~~~~~~~~DlvllDi~mP~~~G~el 71 (123)
T 2lpm_A 8 RLRVLVVEDESMIA--------MLIEDTLCELGHE---VAATA--S---RMQEALDIARKGQFDIAIIDVNLDGEPSYPV 71 (123)
T ss_dssp CCCEEEESSSTTTS--------HHHHHHHHHHCCC---CCBCS--C---CHHHHHHHHHHCCSSEEEECSSSSSCCSHHH
T ss_pred CCEEEEEeCCHHHH--------HHHHHHHHHCCCE---EEEEE--C---CHHHHHHHHHhCCCCEEEEecCCCCCCHHHH
Confidence 46677777654221 2233345555776 43222 1 2344456778889999999775333368877
Q ss_pred HHHHhcCCCcEEEE
Q 028129 198 NLLAEFIPCPVLLL 211 (213)
Q Consensus 198 ~~vl~~a~cPVLvV 211 (213)
...+++..+||+++
T Consensus 72 ~~~lr~~~ipvI~l 85 (123)
T 2lpm_A 72 ADILAERNVPFIFA 85 (123)
T ss_dssp HHHHHHTCCSSCCB
T ss_pred HHHHHcCCCCEEEE
Confidence 77777788898764
No 44
>3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae}
Probab=86.18 E-value=4.1 Score=30.08 Aligned_cols=78 Identities=14% Similarity=0.218 Sum_probs=45.4
Q ss_pred EEEEEEEeCCCCCChhhHHHHHHHHHHHHHhCCCCceeEEEEEcccCCchHHHHHHHHHHcCCcEEEEcccCCCCCCchH
Q 028129 118 DITVVVIDERQKESLPEHENRLSSIRWHLSEGGFQEFRLLERLGEGSSKPTAIIGDVADELNLDLVIISMEAIHSKHVDA 197 (213)
Q Consensus 118 ~L~ll~V~~~~~~~~~~~~~~l~~~~~~l~~~g~~~~~v~~~v~~G~~~p~~~Il~~A~e~~aDLIVmG~~g~~~~Gs~~ 197 (213)
++.++.|++.. ...+-+...+...|+. +......| .+-++..++.++|+|++-..=..-+|...
T Consensus 12 ~~rILiVDD~~--------~~r~~l~~~L~~~G~~---~v~~a~~g-----~~al~~~~~~~~DlillD~~MP~mdG~el 75 (134)
T 3to5_A 12 NMKILIVDDFS--------TMRRIVKNLLRDLGFN---NTQEADDG-----LTALPMLKKGDFDFVVTDWNMPGMQGIDL 75 (134)
T ss_dssp TCCEEEECSCH--------HHHHHHHHHHHHTTCC---CEEEESSH-----HHHHHHHHHHCCSEEEEESCCSSSCHHHH
T ss_pred CCEEEEEeCCH--------HHHHHHHHHHHHcCCc---EEEEECCH-----HHHHHHHHhCCCCEEEEcCCCCCCCHHHH
Confidence 35566776532 2233444556677875 33333333 34455667778999999775433357666
Q ss_pred HHHHhc----CCCcEEEE
Q 028129 198 NLLAEF----IPCPVLLL 211 (213)
Q Consensus 198 ~~vl~~----a~cPVLvV 211 (213)
..-++. ..+||+++
T Consensus 76 ~~~ir~~~~~~~ipvI~l 93 (134)
T 3to5_A 76 LKNIRADEELKHLPVLMI 93 (134)
T ss_dssp HHHHHHSTTTTTCCEEEE
T ss_pred HHHHHhCCCCCCCeEEEE
Confidence 555543 45788775
No 45
>3rg8_A Phosphoribosylaminoimidazole carboxylase, PURE PR; purine biosynthesis, lyase; 1.74A {Treponema denticola} SCOP: c.23.8.0 PDB: 3rgg_A*
Probab=86.06 E-value=5 Score=31.05 Aligned_cols=70 Identities=17% Similarity=0.210 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHhCCCCceeEEEEEcccCCchHHHHHHHHHH---c-CCcEEEEcccCCCCCCchHHHHHhcCCCcEEEEc
Q 028129 137 NRLSSIRWHLSEGGFQEFRLLERLGEGSSKPTAIIGDVADE---L-NLDLVIISMEAIHSKHVDANLLAEFIPCPVLLLP 212 (213)
Q Consensus 137 ~~l~~~~~~l~~~g~~~~~v~~~v~~G~~~p~~~Il~~A~e---~-~aDLIVmG~~g~~~~Gs~~~~vl~~a~cPVLvVp 212 (213)
..++++...+++.|++ ++..+..-. ...+.+.+|+++ . +++.||.++-+. +--.-.+...+++||+-||
T Consensus 16 ~v~~~a~~~l~~~gi~---~ev~V~saH-R~p~~~~~~~~~a~~~~~~~ViIa~AG~a---a~LpgvvA~~t~~PVIgVP 88 (159)
T 3rg8_A 16 GHAEKIASELKTFGIE---YAIRIGSAH-KTAEHVVSMLKEYEALDRPKLYITIAGRS---NALSGFVDGFVKGATIACP 88 (159)
T ss_dssp HHHHHHHHHHHHTTCE---EEEEECCTT-TCHHHHHHHHHHHHTSCSCEEEEEECCSS---CCHHHHHHHHSSSCEEECC
T ss_pred HHHHHHHHHHHHcCCC---EEEEEEccc-CCHHHHHHHHHHhhhcCCCcEEEEECCch---hhhHHHHHhccCCCEEEee
Confidence 3456666777888888 666665444 456666666543 3 589999988654 4445557888999999887
Q ss_pred C
Q 028129 213 L 213 (213)
Q Consensus 213 ~ 213 (213)
.
T Consensus 89 ~ 89 (159)
T 3rg8_A 89 P 89 (159)
T ss_dssp C
T ss_pred C
Confidence 3
No 46
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=85.97 E-value=7 Score=27.35 Aligned_cols=43 Identities=12% Similarity=0.116 Sum_probs=24.4
Q ss_pred HHHHHHHHHcCCcEEEEcccCCCCCCchHHHHHhc----CCCcEEEE
Q 028129 169 AIIGDVADELNLDLVIISMEAIHSKHVDANLLAEF----IPCPVLLL 211 (213)
Q Consensus 169 ~~Il~~A~e~~aDLIVmG~~g~~~~Gs~~~~vl~~----a~cPVLvV 211 (213)
++.++..++..+|+||+...-....|.....-+++ ..+||+++
T Consensus 44 ~~a~~~l~~~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~~ii~~ 90 (143)
T 3cnb_A 44 FDAGDLLHTVKPDVVMLDLMMVGMDGFSICHRIKSTPATANIIVIAM 90 (143)
T ss_dssp HHHHHHHHHTCCSEEEEETTCTTSCHHHHHHHHHTSTTTTTSEEEEE
T ss_pred HHHHHHHHhcCCCEEEEecccCCCcHHHHHHHHHhCccccCCcEEEE
Confidence 45555666677888888775432234433333433 45777765
No 47
>2xry_A Deoxyribodipyrimidine photolyase; DNA damage, DNA repair; HET: FAD; 1.50A {Methanosarcina mazei} PDB: 2xrz_A*
Probab=85.94 E-value=5.9 Score=35.54 Aligned_cols=107 Identities=14% Similarity=0.091 Sum_probs=66.9
Q ss_pred CCHHHHHHHHHHHHHHhhcCCEEEEEEEeCCCCCCh--h---hHHHHHHHHHHHHHhCCCCceeEEEEEcccCCchHHHH
Q 028129 97 LSEGTRQAAATTAALAKKYGADITVVVIDERQKESL--P---EHENRLSSIRWHLSEGGFQEFRLLERLGEGSSKPTAII 171 (213)
Q Consensus 97 ~S~~s~~Al~~A~~LA~~~~a~L~ll~V~~~~~~~~--~---~~~~~l~~~~~~l~~~g~~~~~v~~~v~~G~~~p~~~I 171 (213)
.--....||..|...|.+.+..+.+|.+.++..... . -.-+.|.++.+.+.+.|.. +.. ..|+ +.+.|
T Consensus 47 LRl~DN~aL~~A~~~a~~~~~~v~~vfi~dp~~~~~~~~r~~Fl~~sL~~L~~~L~~~G~~---L~v--~~g~--~~~~l 119 (482)
T 2xry_A 47 QRAEDNWALLFSRAIAKEANVPVVVVFCLTDEFLEAGIRQYEFMLKGLQELEVSLSRKKIP---SFF--LRGD--PGEKI 119 (482)
T ss_dssp CCSSSCHHHHHHHHHHHHHTSCEEEEEEECTTGGGSCHHHHHHHHHHHHHHHHHHHHTTCC---EEE--EESC--HHHHH
T ss_pred CCccccHHHHHHHHHHHHcCCcEEEEEEeChhhhccCHHHHHHHHHHHHHHHHHHHHcCCc---EEE--EeCC--HHHHH
Confidence 344455788888888766677787776665432211 1 1234456666778888888 543 4586 99999
Q ss_pred HHHHHHcCCcEEEEcccCCCCCCch-HHHHHhcCCCcEEEE
Q 028129 172 GDVADELNLDLVIISMEAIHSKHVD-ANLLAEFIPCPVLLL 211 (213)
Q Consensus 172 l~~A~e~~aDLIVmG~~g~~~~Gs~-~~~vl~~a~cPVLvV 211 (213)
.+++++++++.|+.-.... ..... ...+.....|++..+
T Consensus 120 ~~l~~~~~~~~V~~~~~~~-~~~~~~~~~v~~~lgi~~~~~ 159 (482)
T 2xry_A 120 SRFVKDYNAGTLVTDFSPL-RIKNQWIEKVISGISIPFFEV 159 (482)
T ss_dssp HHHHHHTTCSEEEEECCCS-HHHHHHHHHHHHHCCSCEEEE
T ss_pred HHHHHHcCCCEEEEecccc-hhHHHHHHHHHHHcCCEEEEE
Confidence 9999999999999854322 00111 122344457777654
No 48
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=85.76 E-value=4.9 Score=29.16 Aligned_cols=63 Identities=17% Similarity=0.099 Sum_probs=33.9
Q ss_pred HHHHHHHHhCCCCceeEEEEEcccCCchHHHHHHHHHHcCCcEEEEcccCCCCCCchHHHHHhc----CCCcEEEE
Q 028129 140 SSIRWHLSEGGFQEFRLLERLGEGSSKPTAIIGDVADELNLDLVIISMEAIHSKHVDANLLAEF----IPCPVLLL 211 (213)
Q Consensus 140 ~~~~~~l~~~g~~~~~v~~~v~~G~~~p~~~Il~~A~e~~aDLIVmG~~g~~~~Gs~~~~vl~~----a~cPVLvV 211 (213)
+.+...+...|+. +.. . . -.++.++..++.++|+||+...-....|..-...+++ ..+||+++
T Consensus 21 ~~l~~~L~~~g~~---v~~-~--~---~~~~al~~l~~~~~dlii~D~~l~~~~g~~~~~~lr~~~~~~~~pii~~ 87 (154)
T 3gt7_A 21 EHLKHILEETGYQ---TEH-V--R---NGREAVRFLSLTRPDLIISDVLMPEMDGYALCRWLKGQPDLRTIPVILL 87 (154)
T ss_dssp HHHHHHHHTTTCE---EEE-E--S---SHHHHHHHHTTCCCSEEEEESCCSSSCHHHHHHHHHHSTTTTTSCEEEE
T ss_pred HHHHHHHHHCCCE---EEE-e--C---CHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhCCCcCCCCEEEE
Confidence 3444455555654 532 2 1 2344455666778888888775432245444433443 45777765
No 49
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=85.52 E-value=3.7 Score=28.96 Aligned_cols=43 Identities=9% Similarity=-0.066 Sum_probs=22.5
Q ss_pred HHHHHHHHHcCCcEEEEcccCCCCCCchHHHHHhc----CCCcEEEE
Q 028129 169 AIIGDVADELNLDLVIISMEAIHSKHVDANLLAEF----IPCPVLLL 211 (213)
Q Consensus 169 ~~Il~~A~e~~aDLIVmG~~g~~~~Gs~~~~vl~~----a~cPVLvV 211 (213)
++.++..++..+|+||+...-....|......+++ ..+||+++
T Consensus 41 ~~a~~~l~~~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~pii~~ 87 (142)
T 3cg4_A 41 GQCIDLLKKGFSGVVLLDIMMPGMDGWDTIRAILDNSLEQGIAIVML 87 (142)
T ss_dssp HHHHHHHHTCCCEEEEEESCCSSSCHHHHHHHHHHTTCCTTEEEEEE
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHhhcccCCCCEEEE
Confidence 44555566667777777765332234333332332 45666654
No 50
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=85.17 E-value=6.6 Score=27.06 Aligned_cols=43 Identities=7% Similarity=-0.055 Sum_probs=24.2
Q ss_pred HHHHHHHHHcCCcEEEEcccCCCCCCchHHHHHh----cCCCcEEEE
Q 028129 169 AIIGDVADELNLDLVIISMEAIHSKHVDANLLAE----FIPCPVLLL 211 (213)
Q Consensus 169 ~~Il~~A~e~~aDLIVmG~~g~~~~Gs~~~~vl~----~a~cPVLvV 211 (213)
++.++..++.++|+|++...-....|.....-++ ...+||+++
T Consensus 37 ~~a~~~l~~~~~dlii~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~ 83 (127)
T 3i42_A 37 TDALHAMSTRGYDAVFIDLNLPDTSGLALVKQLRALPMEKTSKFVAV 83 (127)
T ss_dssp HHHHHHHHHSCCSEEEEESBCSSSBHHHHHHHHHHSCCSSCCEEEEE
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHhhhccCCCCEEEE
Confidence 4455566677788888877543223444333333 345677664
No 51
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=84.76 E-value=3.1 Score=29.72 Aligned_cols=43 Identities=19% Similarity=0.061 Sum_probs=26.1
Q ss_pred HHHHHHHHHcCCcEEEEcccCCCCCCchHHHHHhc----CCCcEEEE
Q 028129 169 AIIGDVADELNLDLVIISMEAIHSKHVDANLLAEF----IPCPVLLL 211 (213)
Q Consensus 169 ~~Il~~A~e~~aDLIVmG~~g~~~~Gs~~~~vl~~----a~cPVLvV 211 (213)
++.++..++..+|+||+...-....|..-...+++ ..+||+++
T Consensus 42 ~~a~~~l~~~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~pii~l 88 (147)
T 2zay_A 42 IEAVPVAVKTHPHLIITEANMPKISGMDLFNSLKKNPQTASIPVIAL 88 (147)
T ss_dssp HHHHHHHHHHCCSEEEEESCCSSSCHHHHHHHHHTSTTTTTSCEEEE
T ss_pred HHHHHHHHcCCCCEEEEcCCCCCCCHHHHHHHHHcCcccCCCCEEEE
Confidence 44556666678999999875432244443333443 56888775
No 52
>1o4v_A Phosphoribosylaminoimidazole mutase PURE; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 1.77A {Thermotoga maritima} SCOP: c.23.8.1
Probab=84.66 E-value=6.5 Score=31.08 Aligned_cols=69 Identities=14% Similarity=0.154 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHhCCCCceeEEEEEcccCCchHHHHHHHHH---HcCCcEEEEcccCCCCCCchHHHHHhcCCCcEEEEc
Q 028129 137 NRLSSIRWHLSEGGFQEFRLLERLGEGSSKPTAIIGDVAD---ELNLDLVIISMEAIHSKHVDANLLAEFIPCPVLLLP 212 (213)
Q Consensus 137 ~~l~~~~~~l~~~g~~~~~v~~~v~~G~~~p~~~Il~~A~---e~~aDLIVmG~~g~~~~Gs~~~~vl~~a~cPVLvVp 212 (213)
..++++...+++.|++ ++..+..-. ...+.+.+|++ +.+++.||.++-+. +--.-.+...+++||+-||
T Consensus 27 ~v~~~a~~~L~~~Gi~---~dv~V~SaH-R~p~~l~~~~~~a~~~g~~ViIa~AG~a---a~LpgvvA~~t~~PVIgVP 98 (183)
T 1o4v_A 27 PVMKQAAEILEEFGID---YEITIVSAH-RTPDRMFEYAKNAEERGIEVIIAGAGGA---AHLPGMVASITHLPVIGVP 98 (183)
T ss_dssp HHHHHHHHHHHHTTCE---EEEEECCTT-TCHHHHHHHHHHTTTTTCCEEEEEEESS---CCHHHHHHHHCSSCEEEEE
T ss_pred HHHHHHHHHHHHcCCC---eEEEEEccc-CCHHHHHHHHHHHHhCCCcEEEEecCcc---cccHHHHHhccCCCEEEee
Confidence 3456666777888888 666665444 45556666655 45789888888654 4445556788999999887
No 53
>3p9x_A Phosphoribosylglycinamide formyltransferase; structural genomics, PSI-biology, protein STRU initiative; 1.90A {Bacillus halodurans}
Probab=84.31 E-value=8.4 Score=31.01 Aligned_cols=88 Identities=9% Similarity=0.061 Sum_probs=55.2
Q ss_pred CCcEEEEeeCCCCCCCHHHHHHHHHHHHHHhhcCCEEEEEEEeCCCCCChhhHHHHHHHHHHHHHhCCCCceeEEEEEcc
Q 028129 83 FKHLLLPITDQNPYLSEGTRQAAATTAALAKKYGADITVVVIDERQKESLPEHENRLSSIRWHLSEGGFQEFRLLERLGE 162 (213)
Q Consensus 83 ~k~ILV~vD~~~~~~S~~s~~Al~~A~~LA~~~~a~L~ll~V~~~~~~~~~~~~~~l~~~~~~l~~~g~~~~~v~~~v~~ 162 (213)
+++|.|-+. ++..+.+++-.+..- ...++++.+|..+.+. ..+.+..++.|++ +...-..
T Consensus 2 m~riavl~S-----g~Gsnl~ali~~~~~-~~l~~eI~~Visn~~~-----------a~v~~~A~~~gIp---~~~~~~~ 61 (211)
T 3p9x_A 2 MKRVAIFAS-----GSGTNAEAIIQSQKA-GQLPCEVALLITDKPG-----------AKVVERVKVHEIP---VCALDPK 61 (211)
T ss_dssp -CEEEEECC-----TTCHHHHHHHHHHHT-TCCSSEEEEEEESCSS-----------SHHHHHHHTTTCC---EEECCGG
T ss_pred CCEEEEEEe-----CCchHHHHHHHHHHc-CCCCcEEEEEEECCCC-----------cHHHHHHHHcCCC---EEEeChh
Confidence 467888888 777777777766532 2345777776555432 1234456777888 4321111
Q ss_pred --cC-CchHHHHHHHHHHcCCcEEEEcccCC
Q 028129 163 --GS-SKPTAIIGDVADELNLDLVIISMEAI 190 (213)
Q Consensus 163 --G~-~~p~~~Il~~A~e~~aDLIVmG~~g~ 190 (213)
.+ ..-.+++++..++.++|+||+...++
T Consensus 62 ~~~~r~~~d~~~~~~l~~~~~Dliv~agy~~ 92 (211)
T 3p9x_A 62 TYPSKEAYEIEVVQQLKEKQIDFVVLAGYMR 92 (211)
T ss_dssp GSSSHHHHHHHHHHHHHHTTCCEEEESSCCS
T ss_pred hcCchhhhHHHHHHHHHhcCCCEEEEeCchh
Confidence 11 00146899999999999999988765
No 54
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=84.15 E-value=8.1 Score=26.67 Aligned_cols=62 Identities=15% Similarity=0.237 Sum_probs=33.2
Q ss_pred HHHHHHHhCCCCceeEEEEEcccCCchHHHHHHHHHHcCCcEEEEcccCCCCCCchHHHHHhc----CCCcEEEE
Q 028129 141 SIRWHLSEGGFQEFRLLERLGEGSSKPTAIIGDVADELNLDLVIISMEAIHSKHVDANLLAEF----IPCPVLLL 211 (213)
Q Consensus 141 ~~~~~l~~~g~~~~~v~~~v~~G~~~p~~~Il~~A~e~~aDLIVmG~~g~~~~Gs~~~~vl~~----a~cPVLvV 211 (213)
.+...+...|+. +. .. . -.++.++..++.++|+|++...-....|..-..-+++ ..+||+++
T Consensus 17 ~l~~~l~~~g~~---v~-~~--~---~~~~al~~l~~~~~dlvllD~~~p~~~g~~~~~~l~~~~~~~~~pii~~ 82 (122)
T 3gl9_A 17 IVSFNLKKEGYE---VI-EA--E---NGQIALEKLSEFTPDLIVLXIMMPVMDGFTVLKKLQEKEEWKRIPVIVL 82 (122)
T ss_dssp HHHHHHHHTTCE---EE-EE--S---SHHHHHHHHTTBCCSEEEECSCCSSSCHHHHHHHHHTSTTTTTSCEEEE
T ss_pred HHHHHHHHCCcE---EE-Ee--C---CHHHHHHHHHhcCCCEEEEeccCCCCcHHHHHHHHHhcccccCCCEEEE
Confidence 334445555655 54 22 1 2234455566778888888765432245444333433 35777765
No 55
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=84.03 E-value=7.3 Score=27.56 Aligned_cols=65 Identities=14% Similarity=0.106 Sum_probs=34.6
Q ss_pred HHHHHHHHhCCCCceeEEEEEcccCCchHHHHHHHHHHcCCcEEEEcccCCCCCCchHHHHHhc----CCCcEEEE
Q 028129 140 SSIRWHLSEGGFQEFRLLERLGEGSSKPTAIIGDVADELNLDLVIISMEAIHSKHVDANLLAEF----IPCPVLLL 211 (213)
Q Consensus 140 ~~~~~~l~~~g~~~~~v~~~v~~G~~~p~~~Il~~A~e~~aDLIVmG~~g~~~~Gs~~~~vl~~----a~cPVLvV 211 (213)
+.+...+...|+. +..... . -.++.++..++.++|+||+...-....|..-..-+++ ..+||+++
T Consensus 19 ~~l~~~L~~~~~~---~~v~~~-~---~~~~a~~~l~~~~~dlii~D~~l~~~~g~~~~~~lr~~~~~~~~pii~~ 87 (144)
T 3kht_A 19 ALIRRVLDRKDIH---CQLEFV-D---NGAKALYQVQQAKYDLIILDIGLPIANGFEVMSAVRKPGANQHTPIVIL 87 (144)
T ss_dssp HHHHHHHHHTTCC---EEEEEE-S---SHHHHHHHHTTCCCSEEEECTTCGGGCHHHHHHHHHSSSTTTTCCEEEE
T ss_pred HHHHHHHHhcCCC---eeEEEE-C---CHHHHHHHhhcCCCCEEEEeCCCCCCCHHHHHHHHHhcccccCCCEEEE
Confidence 3444455665655 322221 1 2345556667778888888775432234443333443 45777765
No 56
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=83.66 E-value=9.4 Score=26.89 Aligned_cols=43 Identities=12% Similarity=-0.091 Sum_probs=23.5
Q ss_pred HHHHHHHHHcCCcEEEEcccCCCCCCchHHHHHhc----CCCcEEEE
Q 028129 169 AIIGDVADELNLDLVIISMEAIHSKHVDANLLAEF----IPCPVLLL 211 (213)
Q Consensus 169 ~~Il~~A~e~~aDLIVmG~~g~~~~Gs~~~~vl~~----a~cPVLvV 211 (213)
++.++..++..+|+|++...-....|..-..-+++ ..+||+++
T Consensus 38 ~~al~~~~~~~~dlvl~D~~lp~~~g~~~~~~lr~~~~~~~~pii~~ 84 (136)
T 3t6k_A 38 EEALQQIYKNLPDALICDVLLPGIDGYTLCKRVRQHPLTKTLPILML 84 (136)
T ss_dssp HHHHHHHHHSCCSEEEEESCCSSSCHHHHHHHHHHSGGGTTCCEEEE
T ss_pred HHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHcCCCcCCccEEEE
Confidence 34445566677888888765432245444333332 35677654
No 57
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}
Probab=82.02 E-value=8.4 Score=26.70 Aligned_cols=64 Identities=19% Similarity=0.249 Sum_probs=31.6
Q ss_pred HHHHHHHHhCCCCceeEEEEEcccCCchHHHHHHHHHHcCCcEEEEcccCCCCCCchHHHHHh--cCCCcEEEE
Q 028129 140 SSIRWHLSEGGFQEFRLLERLGEGSSKPTAIIGDVADELNLDLVIISMEAIHSKHVDANLLAE--FIPCPVLLL 211 (213)
Q Consensus 140 ~~~~~~l~~~g~~~~~v~~~v~~G~~~p~~~Il~~A~e~~aDLIVmG~~g~~~~Gs~~~~vl~--~a~cPVLvV 211 (213)
+.+...+.+.|+. +......+. +.++..++.++|+|++...-....|..-..-++ ...+||+++
T Consensus 15 ~~l~~~L~~~g~~---v~~~~~~~~-----~a~~~~~~~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~ii~~ 80 (134)
T 3f6c_A 15 AAIRNLLIKNDIE---ILAELTEGG-----SAVQRVETLKPDIVIIDVDIPGVNGIQVLETLRKRQYSGIIIIV 80 (134)
T ss_dssp HHHHHHHHHTTEE---EEEEESSST-----THHHHHHHHCCSEEEEETTCSSSCHHHHHHHHHHTTCCSEEEEE
T ss_pred HHHHHHHhhCCcE---EEEEcCCHH-----HHHHHHHhcCCCEEEEecCCCCCChHHHHHHHHhcCCCCeEEEE
Confidence 3344445555544 543443333 233444556788888877643223443333232 235666654
No 58
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=80.88 E-value=9.2 Score=27.70 Aligned_cols=22 Identities=14% Similarity=-0.183 Sum_probs=12.1
Q ss_pred CCCcEEEEeeCCCCCCCHHHHHHHHHHH
Q 028129 82 NFKHLLLPITDQNPYLSEGTRQAAATTA 109 (213)
Q Consensus 82 ~~k~ILV~vD~~~~~~S~~s~~Al~~A~ 109 (213)
+..+|||.-| .+.....+...+
T Consensus 35 ~~~~Ilivdd------~~~~~~~l~~~L 56 (157)
T 3hzh_A 35 IPFNVLIVDD------SVFTVKQLTQIF 56 (157)
T ss_dssp EECEEEEECS------CHHHHHHHHHHH
T ss_pred CceEEEEEeC------CHHHHHHHHHHH
Confidence 3456777655 455555555443
No 59
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=80.85 E-value=8.1 Score=27.66 Aligned_cols=43 Identities=9% Similarity=0.119 Sum_probs=20.9
Q ss_pred HHHHHHHHHcCCcEEEEcccCCCCCCchHHHHHh--cCCCcEEEE
Q 028129 169 AIIGDVADELNLDLVIISMEAIHSKHVDANLLAE--FIPCPVLLL 211 (213)
Q Consensus 169 ~~Il~~A~e~~aDLIVmG~~g~~~~Gs~~~~vl~--~a~cPVLvV 211 (213)
++.++..++..+|+||+...-....|......++ ...+||+++
T Consensus 56 ~~al~~l~~~~~dlii~D~~l~~~~g~~~~~~l~~~~~~~~ii~l 100 (150)
T 4e7p_A 56 QEAIQLLEKESVDIAILDVEMPVKTGLEVLEWIRSEKLETKVVVV 100 (150)
T ss_dssp HHHHHHHTTSCCSEEEECSSCSSSCHHHHHHHHHHTTCSCEEEEE
T ss_pred HHHHHHhhccCCCEEEEeCCCCCCcHHHHHHHHHHhCCCCeEEEE
Confidence 3445555666677777766533223333322222 234566554
No 60
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=80.74 E-value=10 Score=25.18 Aligned_cols=43 Identities=12% Similarity=0.006 Sum_probs=23.8
Q ss_pred HHHHHHHHHcCCcEEEEcccCCCCCCchHHHHHhc----CCCcEEEE
Q 028129 169 AIIGDVADELNLDLVIISMEAIHSKHVDANLLAEF----IPCPVLLL 211 (213)
Q Consensus 169 ~~Il~~A~e~~aDLIVmG~~g~~~~Gs~~~~vl~~----a~cPVLvV 211 (213)
++.++..++..+|+||+...-....|..-...+++ ..+|++++
T Consensus 35 ~~~~~~l~~~~~dlii~d~~~~~~~~~~~~~~l~~~~~~~~~~ii~~ 81 (119)
T 2j48_A 35 STALDQLDLLQPIVILMAWPPPDQSCLLLLQHLREHQADPHPPLVLF 81 (119)
T ss_dssp HHHHHHHHHHCCSEEEEECSTTCCTHHHHHHHHHHTCCCSSCCCEEE
T ss_pred HHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHhccccCCCCEEEE
Confidence 44455556668888888775432234333333332 45777664
No 61
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=80.63 E-value=12 Score=25.88 Aligned_cols=43 Identities=14% Similarity=-0.093 Sum_probs=23.0
Q ss_pred HHHHHHHHHcCCcEEEEcccCCCCCCchHHHHHhc----CCCcEEEE
Q 028129 169 AIIGDVADELNLDLVIISMEAIHSKHVDANLLAEF----IPCPVLLL 211 (213)
Q Consensus 169 ~~Il~~A~e~~aDLIVmG~~g~~~~Gs~~~~vl~~----a~cPVLvV 211 (213)
++.++..++.++|+|++...-....|..-..-+++ ..+||+++
T Consensus 37 ~~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~~pii~~ 83 (133)
T 3nhm_A 37 ASGLQQALAHPPDVLISDVNMDGMDGYALCGHFRSEPTLKHIPVIFV 83 (133)
T ss_dssp HHHHHHHHHSCCSEEEECSSCSSSCHHHHHHHHHHSTTTTTCCEEEE
T ss_pred HHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHhCCccCCCCEEEE
Confidence 34445556677888888765432234433333333 25677664
No 62
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=80.54 E-value=12 Score=25.83 Aligned_cols=43 Identities=14% Similarity=0.067 Sum_probs=20.5
Q ss_pred HHHHHHHHHcCCcEEEEcccCCCCCCchHHHHHh--cCCCcEEEE
Q 028129 169 AIIGDVADELNLDLVIISMEAIHSKHVDANLLAE--FIPCPVLLL 211 (213)
Q Consensus 169 ~~Il~~A~e~~aDLIVmG~~g~~~~Gs~~~~vl~--~a~cPVLvV 211 (213)
++.++..++.++|+|++...-....|..-..-++ ...+||+++
T Consensus 41 ~~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii~~ 85 (130)
T 3eod_A 41 VDALELLGGFTPDLMICDIAMPRMNGLKLLEHIRNRGDQTPVLVI 85 (130)
T ss_dssp HHHHHHHTTCCCSEEEECCC-----CHHHHHHHHHTTCCCCEEEE
T ss_pred HHHHHHHhcCCCCEEEEecCCCCCCHHHHHHHHHhcCCCCCEEEE
Confidence 3444555666777777766432223443333222 235666654
No 63
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=80.32 E-value=8.2 Score=27.72 Aligned_cols=16 Identities=25% Similarity=0.356 Sum_probs=7.8
Q ss_pred HHHHHcCCcEEEEccc
Q 028129 173 DVADELNLDLVIISME 188 (213)
Q Consensus 173 ~~A~e~~aDLIVmG~~ 188 (213)
+..++..+|+||+...
T Consensus 52 ~~l~~~~~dlvi~D~~ 67 (153)
T 3hv2_A 52 QLLASREVDLVISAAH 67 (153)
T ss_dssp HHHHHSCCSEEEEESC
T ss_pred HHHHcCCCCEEEEeCC
Confidence 3334445555555543
No 64
>3umv_A Deoxyribodipyrimidine photo-lyase; CPD cyclobutane pyrimidine dimers, UV damaged DNA, DNA repai flavoprotein; HET: FAD; 1.71A {Oryza sativa japonica group}
Probab=80.22 E-value=6 Score=36.05 Aligned_cols=81 Identities=15% Similarity=0.081 Sum_probs=57.6
Q ss_pred CCHHHHHHHHHHHHHHhhcCCEEEEEEEeCCCC--CCh-h----hHHHHHHHHHHHHHhCCCCceeEEEEEcccCCchHH
Q 028129 97 LSEGTRQAAATTAALAKKYGADITVVVIDERQK--ESL-P----EHENRLSSIRWHLSEGGFQEFRLLERLGEGSSKPTA 169 (213)
Q Consensus 97 ~S~~s~~Al~~A~~LA~~~~a~L~ll~V~~~~~--~~~-~----~~~~~l~~~~~~l~~~g~~~~~v~~~v~~G~~~p~~ 169 (213)
+--....||..|++.|.+.+..|.+|.+.++.. ... . -..+.|+++...+.+.|.. .. +..|+ +.+
T Consensus 48 LRl~DN~AL~~A~~~a~~~~~pVl~vfildp~~~~~~~~~~r~~FL~~sL~dL~~~L~~lG~~---L~--v~~G~--p~~ 120 (506)
T 3umv_A 48 QRLADNWALLHAAGLAAASASPLAVAFALFPRPFLLSARRRQLGFLLRGLRRLAADAAARHLP---FF--LFTGG--PAE 120 (506)
T ss_dssp CCSTTCHHHHHHHHHHHHHTCCEEEEEECCCTTCGGGCCHHHHHHHHHHHHHHHHHHHHTTCC---EE--EESSC--TTH
T ss_pred cchhhcHHHHHHHHhhhhcCCCEEEEEeccchhhccCCCHHHHHHHHHHHHHHHHHHHHcCCc---eE--EEecC--hHH
Confidence 555666899999998887777888887665541 111 1 1224456666777888877 43 45686 888
Q ss_pred HHHHHHHHcCCcEEEE
Q 028129 170 IIGDVADELNLDLVII 185 (213)
Q Consensus 170 ~Il~~A~e~~aDLIVm 185 (213)
. .+++++.+++.|+.
T Consensus 121 v-~~L~~~~~a~~V~~ 135 (506)
T 3umv_A 121 I-PALVQRLGASTLVA 135 (506)
T ss_dssp H-HHHHHHTTCSEEEE
T ss_pred H-HHHHHhcCCCEEEe
Confidence 8 99999999999997
No 65
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=80.08 E-value=4.4 Score=29.25 Aligned_cols=43 Identities=9% Similarity=-0.130 Sum_probs=23.7
Q ss_pred HHHHHHHHHcCCcEEEEcccCCCCCCchHHHHHh--cCCCcEEEE
Q 028129 169 AIIGDVADELNLDLVIISMEAIHSKHVDANLLAE--FIPCPVLLL 211 (213)
Q Consensus 169 ~~Il~~A~e~~aDLIVmG~~g~~~~Gs~~~~vl~--~a~cPVLvV 211 (213)
++.++..++..+|+||+...-....|......++ ...+||+++
T Consensus 37 ~~a~~~l~~~~~dliild~~l~~~~g~~~~~~l~~~~~~~pii~l 81 (155)
T 1qkk_A 37 TEALAGLSADFAGIVISDIRMPGMDGLALFRKILALDPDLPMILV 81 (155)
T ss_dssp HHHHHTCCTTCCSEEEEESCCSSSCHHHHHHHHHHHCTTSCEEEE
T ss_pred HHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhhCCCCCEEEE
Confidence 4455666667788888877543223433222222 346777765
No 66
>3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp}
Probab=79.49 E-value=8.2 Score=26.93 Aligned_cols=20 Identities=15% Similarity=0.232 Sum_probs=11.6
Q ss_pred HHHHHHHHHcCCcEEEEccc
Q 028129 169 AIIGDVADELNLDLVIISME 188 (213)
Q Consensus 169 ~~Il~~A~e~~aDLIVmG~~ 188 (213)
++.++..++.++|+||+...
T Consensus 44 ~~a~~~~~~~~~dlii~d~~ 63 (140)
T 3cg0_A 44 EEAVRCAPDLRPDIALVDIM 63 (140)
T ss_dssp HHHHHHHHHHCCSEEEEESS
T ss_pred HHHHHHHHhCCCCEEEEecC
Confidence 34444455556777777654
No 67
>3c3m_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.70A {Methanoculleus marisnigri JR1}
Probab=79.37 E-value=14 Score=25.94 Aligned_cols=18 Identities=17% Similarity=0.233 Sum_probs=10.2
Q ss_pred HHHHHHHcCCcEEEEccc
Q 028129 171 IGDVADELNLDLVIISME 188 (213)
Q Consensus 171 Il~~A~e~~aDLIVmG~~ 188 (213)
.++..++..+|+|++...
T Consensus 39 al~~l~~~~~dlvi~D~~ 56 (138)
T 3c3m_A 39 CLEALNATPPDLVLLDIM 56 (138)
T ss_dssp HHHHHHHSCCSEEEEESC
T ss_pred HHHHHhccCCCEEEEeCC
Confidence 334445556666666654
No 68
>1mb3_A Cell division response regulator DIVK; signal transduction protein, structural proteomics in europe, spine, structural genomics; 1.41A {Caulobacter vibrioides} SCOP: c.23.1.1 PDB: 1m5u_A 1mav_A 1mb0_A 1m5t_A
Probab=79.30 E-value=12 Score=25.34 Aligned_cols=42 Identities=14% Similarity=0.176 Sum_probs=21.4
Q ss_pred HHHHHHHHcCCcEEEEcccCCCCCCchHHHHHhc----CCCcEEEE
Q 028129 170 IIGDVADELNLDLVIISMEAIHSKHVDANLLAEF----IPCPVLLL 211 (213)
Q Consensus 170 ~Il~~A~e~~aDLIVmG~~g~~~~Gs~~~~vl~~----a~cPVLvV 211 (213)
+.++..++..+|+|++...-....|......+++ ..+||+++
T Consensus 36 ~a~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~ 81 (124)
T 1mb3_A 36 SALSIARENKPDLILMDIQLPEISGLEVTKWLKEDDDLAHIPVVAV 81 (124)
T ss_dssp HHHHHHHHHCCSEEEEESBCSSSBHHHHHHHHHHSTTTTTSCEEEE
T ss_pred HHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHcCccccCCcEEEE
Confidence 3344555566777777765332234433333332 35677664
No 69
>1jbe_A Chemotaxis protein CHEY; signaling protein; 1.08A {Escherichia coli} SCOP: c.23.1.1 PDB: 3chy_A 1a0o_A 1cey_A 1bdj_A 1eay_A 1f4v_A 1ffg_A 1ffs_A 1ffw_A 1fqw_A 2b1j_A 1chn_A 1djm_A 1kmi_Y* 1d4z_A 3olx_A 3olw_A 1cye_A 2che_A 2chf_A ...
Probab=79.27 E-value=13 Score=25.49 Aligned_cols=43 Identities=12% Similarity=0.016 Sum_probs=24.2
Q ss_pred HHHHHHHHHcCCcEEEEcccCCCCCCchHHHHHhc----CCCcEEEE
Q 028129 169 AIIGDVADELNLDLVIISMEAIHSKHVDANLLAEF----IPCPVLLL 211 (213)
Q Consensus 169 ~~Il~~A~e~~aDLIVmG~~g~~~~Gs~~~~vl~~----a~cPVLvV 211 (213)
.+.++..++..+|+|++...-....|..-...+++ ..+||+++
T Consensus 39 ~~a~~~~~~~~~dlvi~D~~l~~~~g~~l~~~l~~~~~~~~~~ii~~ 85 (128)
T 1jbe_A 39 VDALNKLQAGGYGFVISDWNMPNMDGLELLKTIRAXXAMSALPVLMV 85 (128)
T ss_dssp HHHHHHHTTCCCCEEEEESCCSSSCHHHHHHHHHC--CCTTCCEEEE
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHhhcccCCCcEEEE
Confidence 34445566677888888775432245443333443 35677665
No 70
>3kcq_A Phosphoribosylglycinamide formyltransferase; structural genomics, niaid, seattle structural center for infectious disease, ssgcid; 2.20A {Anaplasma phagocytophilum} SCOP: c.65.1.0
Probab=79.07 E-value=6.2 Score=31.87 Aligned_cols=89 Identities=13% Similarity=0.052 Sum_probs=52.8
Q ss_pred hcCCCcEEEEeeCCCCCCCHHHHHHHHHHHHHHhhcCCEEEEEEEeCCCCCChhhHHHHHHHHHHHHHhCCCCceeEEEE
Q 028129 80 FTNFKHLLLPITDQNPYLSEGTRQAAATTAALAKKYGADITVVVIDERQKESLPEHENRLSSIRWHLSEGGFQEFRLLER 159 (213)
Q Consensus 80 ~~~~k~ILV~vD~~~~~~S~~s~~Al~~A~~LA~~~~a~L~ll~V~~~~~~~~~~~~~~l~~~~~~l~~~g~~~~~v~~~ 159 (213)
|...++|.|-+. ++....+++-.+.. ....++++.+|..+.+... . .+..++.|+. +...
T Consensus 5 ~~~~~ri~vl~S-----G~gsnl~all~~~~-~~~~~~~I~~Vis~~~~a~------~-----l~~A~~~gIp---~~~~ 64 (215)
T 3kcq_A 5 MKKELRVGVLIS-----GRGSNLEALAKAFS-TEESSVVISCVISNNAEAR------G-----LLIAQSYGIP---TFVV 64 (215)
T ss_dssp --CCEEEEEEES-----SCCHHHHHHHHHTC-CC-CSEEEEEEEESCTTCT------H-----HHHHHHTTCC---EEEC
T ss_pred CCCCCEEEEEEE-----CCcHHHHHHHHHHH-cCCCCcEEEEEEeCCcchH------H-----HHHHHHcCCC---EEEe
Confidence 345678988888 77777666655532 1122456655544433211 1 2345667888 4321
Q ss_pred EcccCCchHHHHHHHHHHcCCcEEEEcccCC
Q 028129 160 LGEGSSKPTAIIGDVADELNLDLVIISMEAI 190 (213)
Q Consensus 160 v~~G~~~p~~~Il~~A~e~~aDLIVmG~~g~ 190 (213)
-... -..+++++..+++++|+||+...++
T Consensus 65 ~~~~--~~~~~~~~~L~~~~~Dlivlagy~~ 93 (215)
T 3kcq_A 65 KRKP--LDIEHISTVLREHDVDLVCLAGFMS 93 (215)
T ss_dssp CBTT--BCHHHHHHHHHHTTCSEEEESSCCS
T ss_pred Cccc--CChHHHHHHHHHhCCCEEEEeCCce
Confidence 1111 1247899999999999999998765
No 71
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=78.99 E-value=13 Score=25.54 Aligned_cols=34 Identities=6% Similarity=-0.029 Sum_probs=18.5
Q ss_pred HHHHHHHHHcCCcEEEEcccCCCCCCchHHHHHh
Q 028129 169 AIIGDVADELNLDLVIISMEAIHSKHVDANLLAE 202 (213)
Q Consensus 169 ~~Il~~A~e~~aDLIVmG~~g~~~~Gs~~~~vl~ 202 (213)
++.++..++.++|+|++...-....|..-..-++
T Consensus 40 ~~a~~~l~~~~~dlii~d~~l~~~~g~~~~~~l~ 73 (132)
T 3lte_A 40 FDAGIKLSTFEPAIMTLDLSMPKLDGLDVIRSLR 73 (132)
T ss_dssp HHHHHHHHHTCCSEEEEESCBTTBCHHHHHHHHH
T ss_pred HHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHH
Confidence 3445556667788888876543223443333343
No 72
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=78.95 E-value=9 Score=25.99 Aligned_cols=15 Identities=20% Similarity=0.339 Sum_probs=7.2
Q ss_pred HHHHHcCCcEEEEcc
Q 028129 173 DVADELNLDLVIISM 187 (213)
Q Consensus 173 ~~A~e~~aDLIVmG~ 187 (213)
+..++..+|+|++..
T Consensus 43 ~~~~~~~~dlvi~d~ 57 (127)
T 2gkg_A 43 EQIRRDRPDLVVLAV 57 (127)
T ss_dssp HHHHHHCCSEEEEES
T ss_pred HHHHhcCCCEEEEeC
Confidence 333444555555544
No 73
>3m6m_D Sensory/regulatory protein RPFC; RPFF, REC, enoyl-COA hydratase, lyase-transferase COMP; 2.50A {Xanthomonas campestris PV}
Probab=78.74 E-value=14 Score=26.23 Aligned_cols=43 Identities=21% Similarity=0.212 Sum_probs=23.3
Q ss_pred HHHHHHHHHcCCcEEEEcccCCCCCCchHHHHHh------cCCCcEEEE
Q 028129 169 AIIGDVADELNLDLVIISMEAIHSKHVDANLLAE------FIPCPVLLL 211 (213)
Q Consensus 169 ~~Il~~A~e~~aDLIVmG~~g~~~~Gs~~~~vl~------~a~cPVLvV 211 (213)
++.++..++.++|+|++...-....|..-..-++ ...+||+++
T Consensus 48 ~~al~~~~~~~~dlvl~D~~mp~~~g~~~~~~lr~~~~~~~~~~pii~~ 96 (143)
T 3m6m_D 48 EQVLDAMAEEDYDAVIVDLHMPGMNGLDMLKQLRVMQASGMRYTPVVVL 96 (143)
T ss_dssp HHHHHHHHHSCCSEEEEESCCSSSCHHHHHHHHHHHHHTTCCCCCEEEE
T ss_pred HHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHhchhccCCCCeEEEE
Confidence 4455566677788888876533223444333332 123677664
No 74
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=78.55 E-value=13 Score=25.35 Aligned_cols=43 Identities=16% Similarity=0.284 Sum_probs=23.5
Q ss_pred HHHHHHHHHcCCcEEEEcccCCCCCCchHHHHH-hcCCCcEEEE
Q 028129 169 AIIGDVADELNLDLVIISMEAIHSKHVDANLLA-EFIPCPVLLL 211 (213)
Q Consensus 169 ~~Il~~A~e~~aDLIVmG~~g~~~~Gs~~~~vl-~~a~cPVLvV 211 (213)
++.++..++.++|+|++...-....|.....-+ ...++|++++
T Consensus 36 ~~al~~~~~~~~dlii~D~~~p~~~g~~~~~~lr~~~~~~ii~~ 79 (120)
T 3f6p_A 36 NEAVEMVEELQPDLILLDIMLPNKDGVEVCREVRKKYDMPIIML 79 (120)
T ss_dssp HHHHHHHHTTCCSEEEEETTSTTTHHHHHHHHHHTTCCSCEEEE
T ss_pred HHHHHHHhhCCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCEEEE
Confidence 344556667788888887654312343332222 3346777664
No 75
>3mm4_A Histidine kinase homolog; receiver domain, CKI1, cytokinin signaling, ROS fold, CHEY-like, transferase; 2.00A {Arabidopsis thaliana} PDB: 3mmn_A
Probab=78.28 E-value=19 Score=27.61 Aligned_cols=8 Identities=0% Similarity=-0.317 Sum_probs=0.0
Q ss_pred Ccchhhhh
Q 028129 52 SLFPRFRR 59 (213)
Q Consensus 52 ~~~~~~~r 59 (213)
+.|++|.=
T Consensus 30 g~Gs~f~~ 37 (206)
T 3mm4_A 30 RVKSVRTG 37 (206)
T ss_dssp --------
T ss_pred CCcceeee
Confidence 44555543
No 76
>1o97_D Electron transferring flavoprotein alpha-subunit; FAD binding; HET: AMP FAD; 1.6A {Methylophilus methylotrophus} SCOP: c.26.2.3 c.31.1.2 PDB: 1o95_D* 1o96_B* 1o94_D* 3clu_D* 3clt_D* 3clr_D* 3cls_D*
Probab=77.68 E-value=6.4 Score=33.70 Aligned_cols=108 Identities=17% Similarity=0.089 Sum_probs=62.6
Q ss_pred EEEEeeCCCCCCCHHHHHHHHHHHHHHhhcC-CEEEEEEEeCCCCCChhhHHHHHHHHHHHHHhCCCCc-eeEEEEEccc
Q 028129 86 LLLPITDQNPYLSEGTRQAAATTAALAKKYG-ADITVVVIDERQKESLPEHENRLSSIRWHLSEGGFQE-FRLLERLGEG 163 (213)
Q Consensus 86 ILV~vD~~~~~~S~~s~~Al~~A~~LA~~~~-a~L~ll~V~~~~~~~~~~~~~~l~~~~~~l~~~g~~~-~~v~~~v~~G 163 (213)
|||-.+.++...++.+.+++..|.+|+. .+ .+++++.+.... +.+++.+...|.+. |.+..... +
T Consensus 3 ilv~~e~~~g~l~~~~~eal~~A~~L~e-~g~~~V~av~~G~~~-----------~~~~~~a~a~GaDkv~~v~d~~l-~ 69 (320)
T 1o97_D 3 ILVIAEHRRNDLRPVSLELIGAANGLKK-SGEDKVVVAVIGSQA-----------DAFVPALSVNGVDELVVVKGSSI-D 69 (320)
T ss_dssp EEEECCEETTEECTHHHHHHHHHHHHCS-STTCEEEEEEESTTG-----------GGGHHHHCBTTCSEEEEEECSCS-S
T ss_pred EEEEEeCcCCCcCHHHHHHHHHHHHHhh-CCCCcEEEEEECCcH-----------HHHHHHHHhcCCceEEEEeCccc-C
Confidence 4555553333457789999999999987 56 588888776521 11112234457663 11111111 1
Q ss_pred C-C-chHHHHHHHHHHcCCcEEEEcccCCCCCCchHHHHHhcCCCcE
Q 028129 164 S-S-KPTAIIGDVADELNLDLVIISMEAIHSKHVDANLLAEFIPCPV 208 (213)
Q Consensus 164 ~-~-~p~~~Il~~A~e~~aDLIVmG~~g~~~~Gs~~~~vl~~a~cPV 208 (213)
. . ..+..|.+.+++.++|+|++|+... ++...-.++.+...|.
T Consensus 70 ~~~~~~a~~La~~i~~~~pdlVL~g~ts~--G~~laprlAa~L~~~~ 114 (320)
T 1o97_D 70 FDPDVFEASVSALIAAHNPSVVLLPHSVD--SLGYASSLASKTGYGF 114 (320)
T ss_dssp CCHHHHHHHHHHHHHHHCCSEEEEECSHH--HHTTHHHHHHTSSCEE
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCc--hhhHHHHHHHHhCCCc
Confidence 1 0 1356777888888999999999543 3334444444444444
No 77
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=77.66 E-value=16 Score=25.68 Aligned_cols=34 Identities=24% Similarity=0.337 Sum_probs=17.6
Q ss_pred cCCcEEEEcccCC-CCCCchHHHHHh-cCCCcEEEE
Q 028129 178 LNLDLVIISMEAI-HSKHVDANLLAE-FIPCPVLLL 211 (213)
Q Consensus 178 ~~aDLIVmG~~g~-~~~Gs~~~~vl~-~a~cPVLvV 211 (213)
..+|+||+...-. ...|......++ ...+||+++
T Consensus 49 ~~~dlvi~D~~l~~~~~g~~~~~~l~~~~~~~ii~l 84 (140)
T 3h5i_A 49 WYPDLILMDIELGEGMDGVQTALAIQQISELPVVFL 84 (140)
T ss_dssp CCCSEEEEESSCSSSCCHHHHHHHHHHHCCCCEEEE
T ss_pred CCCCEEEEeccCCCCCCHHHHHHHHHhCCCCCEEEE
Confidence 6778888876532 123433322222 246777664
No 78
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=77.62 E-value=11 Score=26.26 Aligned_cols=43 Identities=7% Similarity=-0.105 Sum_probs=23.1
Q ss_pred HHHHHHHHHcCCcEEEEcccCCCCCCchHHHHHh--cCCCcEEEE
Q 028129 169 AIIGDVADELNLDLVIISMEAIHSKHVDANLLAE--FIPCPVLLL 211 (213)
Q Consensus 169 ~~Il~~A~e~~aDLIVmG~~g~~~~Gs~~~~vl~--~a~cPVLvV 211 (213)
++.++..++..+|+||+...-....|..-..-++ ...+||+++
T Consensus 41 ~~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii~~ 85 (137)
T 3hdg_A 41 EEGERLFGLHAPDVIITDIRMPKLGGLEMLDRIKAGGAKPYVIVI 85 (137)
T ss_dssp HHHHHHHHHHCCSEEEECSSCSSSCHHHHHHHHHHTTCCCEEEEC
T ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCcEEEE
Confidence 3445555666788888877543223443332233 235666654
No 79
>1zun_A Sulfate adenylyltransferase subunit 2; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae} SCOP: c.26.2.2
Probab=77.40 E-value=11 Score=32.16 Aligned_cols=97 Identities=14% Similarity=0.150 Sum_probs=59.4
Q ss_pred hcCCCcEEEEeeCCCCCCCHHHHHHHHHHHHHHhhcCCEEEEEEEeCCCCCChhhHHHHHHHHHHHHHhCCCCceeEEEE
Q 028129 80 FTNFKHLLLPITDQNPYLSEGTRQAAATTAALAKKYGADITVVVIDERQKESLPEHENRLSSIRWHLSEGGFQEFRLLER 159 (213)
Q Consensus 80 ~~~~k~ILV~vD~~~~~~S~~s~~Al~~A~~LA~~~~a~L~ll~V~~~~~~~~~~~~~~l~~~~~~l~~~g~~~~~v~~~ 159 (213)
...|.+|+|++. |...+.-.+..+..+....+-++.+++++.... .++. .+.+.+..++.|++ +...
T Consensus 43 ~~~~~~ivVa~S-----GGkDS~vLL~Ll~~~~~~~~~~i~vv~vDtg~~--~~et---~~~v~~~~~~~gi~---l~v~ 109 (325)
T 1zun_A 43 AAEFDNPVMLYS-----IGKDSAVMLHLARKAFFPGKLPFPVMHVDTRWK--FQEM---YRFRDQMVEEMGLD---LITH 109 (325)
T ss_dssp HHHCSSEEEECC-----SSHHHHHHHHHHHHHHTTSCCSSCEEEECCSCC--CHHH---HHHHHHHHHTTTCC---EEEE
T ss_pred HHhCCCEEEEEc-----ChHHHHHHHHHHHHhccccCCCEEEEEEECCCC--CHHH---HHHHHHHHHHcCCC---EEEE
Confidence 344679999999 899999888888777654455678888876532 1222 23333344455665 2221
Q ss_pred -----EcccCCch-------------HHHHHHHHHHcCCcEEEEcccCC
Q 028129 160 -----LGEGSSKP-------------TAIIGDVADELNLDLVIISMEAI 190 (213)
Q Consensus 160 -----v~~G~~~p-------------~~~Il~~A~e~~aDLIVmG~~g~ 190 (213)
...|. .+ .+.+.++++++++|.++.|.|..
T Consensus 110 ~~~~~~~~G~-~~~~~~~~~cc~~~K~~pL~~~l~e~g~~~i~tG~R~D 157 (325)
T 1zun_A 110 INPDGVAQGI-NPFTHGSAKHTDIMKTEGLKQALDKHGFDAAFGGARRD 157 (325)
T ss_dssp CC---------------CCHHHHHHTHHHHHHHHHHHTCSEEECCCCTT
T ss_pred eCchHHhcCC-CccccChHHHHHHHHHHHHHHHHHHcCCCEEEEecccc
Confidence 11121 11 12466677888999999999763
No 80
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1
Probab=77.29 E-value=11 Score=25.92 Aligned_cols=34 Identities=15% Similarity=0.193 Sum_probs=18.9
Q ss_pred cCCcEEEEcccCCCCCCchHHHHHhc----CCCcEEEE
Q 028129 178 LNLDLVIISMEAIHSKHVDANLLAEF----IPCPVLLL 211 (213)
Q Consensus 178 ~~aDLIVmG~~g~~~~Gs~~~~vl~~----a~cPVLvV 211 (213)
..+|+|++...-....|.....-+++ ..+||+++
T Consensus 54 ~~~dlvi~d~~~~~~~g~~~~~~l~~~~~~~~~pii~l 91 (140)
T 1k68_A 54 SRPDLILLXLNLPKKDGREVLAEIKSDPTLKRIPVVVL 91 (140)
T ss_dssp CCCSEEEECSSCSSSCHHHHHHHHHHSTTGGGSCEEEE
T ss_pred CCCcEEEEecCCCcccHHHHHHHHHcCcccccccEEEE
Confidence 67888888765432234433333433 35777765
No 81
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=76.81 E-value=13 Score=26.57 Aligned_cols=43 Identities=9% Similarity=-0.062 Sum_probs=21.4
Q ss_pred HHHHHHHHHcCCcEEEEcccCCCCCCchHHHHHh--cCCCcEEEE
Q 028129 169 AIIGDVADELNLDLVIISMEAIHSKHVDANLLAE--FIPCPVLLL 211 (213)
Q Consensus 169 ~~Il~~A~e~~aDLIVmG~~g~~~~Gs~~~~vl~--~a~cPVLvV 211 (213)
++.++..++..+|+||+...-....|.....-++ ...+||+++
T Consensus 41 ~~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii~l 85 (154)
T 2rjn_A 41 LDALEALKGTSVQLVISDMRMPEMGGEVFLEQVAKSYPDIERVVI 85 (154)
T ss_dssp HHHHHHHTTSCCSEEEEESSCSSSCHHHHHHHHHHHCTTSEEEEE
T ss_pred HHHHHHHhcCCCCEEEEecCCCCCCHHHHHHHHHHhCCCCcEEEE
Confidence 3444555566677777766432123333222222 245666654
No 82
>3ilh_A Two component response regulator; NYSGXRC, PSI-II, protein S initiative, structural genomics; 2.59A {Cytophaga hutchinsonii}
Probab=76.78 E-value=16 Score=25.42 Aligned_cols=34 Identities=15% Similarity=-0.052 Sum_probs=18.2
Q ss_pred cCCcEEEEcccCCCCCCchHHHHHhc------CCCcEEEE
Q 028129 178 LNLDLVIISMEAIHSKHVDANLLAEF------IPCPVLLL 211 (213)
Q Consensus 178 ~~aDLIVmG~~g~~~~Gs~~~~vl~~------a~cPVLvV 211 (213)
..+|+|++...-....|..-...+++ ..+|++++
T Consensus 59 ~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~~~ii~~ 98 (146)
T 3ilh_A 59 RWPSIICIDINMPGINGWELIDLFKQHFQPMKNKSIVCLL 98 (146)
T ss_dssp CCCSEEEEESSCSSSCHHHHHHHHHHHCGGGTTTCEEEEE
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHHhhhhccCCCeEEEE
Confidence 67788888765432234443333332 55666654
No 83
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0
Probab=76.65 E-value=16 Score=25.29 Aligned_cols=9 Identities=22% Similarity=0.578 Sum_probs=6.0
Q ss_pred CcEEEEccc
Q 028129 180 LDLVIISME 188 (213)
Q Consensus 180 aDLIVmG~~ 188 (213)
+|+||+...
T Consensus 53 ~dlvi~D~~ 61 (136)
T 3hdv_A 53 IGLMITDLR 61 (136)
T ss_dssp EEEEEECSC
T ss_pred CcEEEEecc
Confidence 677777654
No 84
>2qzj_A Two-component response regulator; 11017X, PSI-II, structural genomics; 2.89A {Clostridium difficile}
Probab=75.71 E-value=11 Score=26.45 Aligned_cols=19 Identities=11% Similarity=-0.020 Sum_probs=11.2
Q ss_pred HHHHHHHHcCCcEEEEccc
Q 028129 170 IIGDVADELNLDLVIISME 188 (213)
Q Consensus 170 ~Il~~A~e~~aDLIVmG~~ 188 (213)
+.++..++..+|+|++...
T Consensus 39 ~al~~~~~~~~dlvllD~~ 57 (136)
T 2qzj_A 39 EAIGKIFSNKYDLIFLEII 57 (136)
T ss_dssp HHHHHHHHCCCSEEEEESE
T ss_pred HHHHHHHhcCCCEEEEeCC
Confidence 3444555566777777654
No 85
>3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP}
Probab=75.67 E-value=16 Score=25.96 Aligned_cols=43 Identities=12% Similarity=0.094 Sum_probs=21.3
Q ss_pred HHHHHHHHHcCCcEEEEcccCCCCCCchHHHHHh--cCCCcEEEE
Q 028129 169 AIIGDVADELNLDLVIISMEAIHSKHVDANLLAE--FIPCPVLLL 211 (213)
Q Consensus 169 ~~Il~~A~e~~aDLIVmG~~g~~~~Gs~~~~vl~--~a~cPVLvV 211 (213)
++.++..++..+|+||+...-....|.....-++ ...+||+++
T Consensus 41 ~~a~~~l~~~~~dlii~D~~l~~~~g~~~~~~l~~~~~~~~ii~l 85 (153)
T 3cz5_A 41 GEAYRLYRETTPDIVVMDLTLPGPGGIEATRHIRQWDGAARILIF 85 (153)
T ss_dssp HHHHHHHHTTCCSEEEECSCCSSSCHHHHHHHHHHHCTTCCEEEE
T ss_pred HHHHHHHhcCCCCEEEEecCCCCCCHHHHHHHHHHhCCCCeEEEE
Confidence 3444555666777777766432113333222222 235666654
No 86
>3h1g_A Chemotaxis protein CHEY homolog; sulfate-bound CHEY, cytoplasm, flagellar rotatio magnesium, metal-binding, phosphoprotein; 1.70A {Helicobacter pylori} SCOP: c.23.1.1 PDB: 3gwg_A 3h1e_A 3h1f_A
Probab=75.44 E-value=17 Score=25.04 Aligned_cols=65 Identities=11% Similarity=0.119 Sum_probs=33.3
Q ss_pred HHHHHHHHhCCCCceeEEEEEcccCCchHHHHHHHHHHcCCcEEEEcccCCCCCCchHHHHHhc----CCCcEEEE
Q 028129 140 SSIRWHLSEGGFQEFRLLERLGEGSSKPTAIIGDVADELNLDLVIISMEAIHSKHVDANLLAEF----IPCPVLLL 211 (213)
Q Consensus 140 ~~~~~~l~~~g~~~~~v~~~v~~G~~~p~~~Il~~A~e~~aDLIVmG~~g~~~~Gs~~~~vl~~----a~cPVLvV 211 (213)
+.+...+...|+. ..... . +..+++....+..++|+|++...-....|..-..-+++ ..+||+++
T Consensus 19 ~~l~~~L~~~g~~---~v~~~--~--~~~~a~~~~~~~~~~dlvi~D~~~p~~~g~~~~~~lr~~~~~~~~pii~~ 87 (129)
T 3h1g_A 19 RIIKNTLSRLGYE---DVLEA--E--HGVEAWEKLDANADTKVLITDWNMPEMNGLDLVKKVRSDSRFKEIPIIMI 87 (129)
T ss_dssp HHHHHHHHHTTCC---CEEEE--S--SHHHHHHHHHHCTTCCEEEECSCCSSSCHHHHHHHHHTSTTCTTCCEEEE
T ss_pred HHHHHHHHHcCCc---EEEEe--C--CHHHHHHHHHhCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCCCeEEEE
Confidence 3444455566664 22223 2 24444444444446899988765432245544433443 35788765
No 87
>3heb_A Response regulator receiver domain protein (CHEY); NYSGXRC, PSI-II, respose regulator, structure initiative, structural genomics; 2.40A {Rhodospirillum rubrum} SCOP: c.23.1.0
Probab=75.39 E-value=17 Score=25.90 Aligned_cols=35 Identities=20% Similarity=0.253 Sum_probs=16.8
Q ss_pred HcCCcEEEEcccCCCCCCchHHHHHhc----CCCcEEEE
Q 028129 177 ELNLDLVIISMEAIHSKHVDANLLAEF----IPCPVLLL 211 (213)
Q Consensus 177 e~~aDLIVmG~~g~~~~Gs~~~~vl~~----a~cPVLvV 211 (213)
+..+|+|++...-....|..-..-+++ ..+||+++
T Consensus 57 ~~~~dliilD~~l~~~~g~~~~~~lr~~~~~~~~pii~~ 95 (152)
T 3heb_A 57 AGRAQLVLLDLNLPDMTGIDILKLVKENPHTRRSPVVIL 95 (152)
T ss_dssp TTCBEEEEECSBCSSSBHHHHHHHHHHSTTTTTSCEEEE
T ss_pred cCCCCEEEEeCCCCCCcHHHHHHHHHhcccccCCCEEEE
Confidence 456677777654321234333333333 34566654
No 88
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=74.17 E-value=17 Score=24.85 Aligned_cols=17 Identities=12% Similarity=0.139 Sum_probs=8.6
Q ss_pred HHHHHHc-CCcEEEEccc
Q 028129 172 GDVADEL-NLDLVIISME 188 (213)
Q Consensus 172 l~~A~e~-~aDLIVmG~~ 188 (213)
++..++. .+|+|++...
T Consensus 42 ~~~l~~~~~~dlvi~d~~ 59 (132)
T 2rdm_A 42 IEMLKSGAAIDGVVTDIR 59 (132)
T ss_dssp HHHHHTTCCCCEEEEESC
T ss_pred HHHHHcCCCCCEEEEeee
Confidence 3444444 5666666554
No 89
>2b4a_A BH3024; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.42A {Bacillus halodurans} SCOP: c.23.1.1
Probab=74.07 E-value=19 Score=24.98 Aligned_cols=43 Identities=16% Similarity=0.094 Sum_probs=22.5
Q ss_pred HHHHHHHHH-cCCcEEEEcccCCCCCCchHHHHHhc--CCCcEEEE
Q 028129 169 AIIGDVADE-LNLDLVIISMEAIHSKHVDANLLAEF--IPCPVLLL 211 (213)
Q Consensus 169 ~~Il~~A~e-~~aDLIVmG~~g~~~~Gs~~~~vl~~--a~cPVLvV 211 (213)
++.++..++ ..+|+|++...-....|.....-+++ ..+|++++
T Consensus 49 ~~al~~l~~~~~~dlvilD~~l~~~~g~~~~~~l~~~~~~~~ii~l 94 (138)
T 2b4a_A 49 SAFFQHRSQLSTCDLLIVSDQLVDLSIFSLLDIVKEQTKQPSVLIL 94 (138)
T ss_dssp HHHHHTGGGGGSCSEEEEETTCTTSCHHHHHHHHTTSSSCCEEEEE
T ss_pred HHHHHHHHhCCCCCEEEEeCCCCCCCHHHHHHHHHhhCCCCCEEEE
Confidence 344455566 67888888765332234433333333 35676654
No 90
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=73.89 E-value=19 Score=24.91 Aligned_cols=20 Identities=25% Similarity=0.416 Sum_probs=11.9
Q ss_pred HHHHHHHHHcCCcEEEEccc
Q 028129 169 AIIGDVADELNLDLVIISME 188 (213)
Q Consensus 169 ~~Il~~A~e~~aDLIVmG~~ 188 (213)
++.++..++..+|+||+...
T Consensus 37 ~~a~~~l~~~~~dlvi~d~~ 56 (140)
T 2qr3_A 37 VSLSTVLREENPEVVLLDMN 56 (140)
T ss_dssp HHHHHHHHHSCEEEEEEETT
T ss_pred HHHHHHHHcCCCCEEEEeCC
Confidence 34445555666777777654
No 91
>1srr_A SPO0F, sporulation response regulatory protein; aspartate pocket, two component system; 1.90A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 1pey_A 3q15_C 2ftk_E* 1fsp_A 1nat_A 1pux_A 2fsp_A 2jvj_A 2jvk_A 2jvi_A 1f51_E
Probab=73.67 E-value=18 Score=24.51 Aligned_cols=42 Identities=14% Similarity=0.111 Sum_probs=19.9
Q ss_pred HHHHHHHHcCCcEEEEcccCCCCCCchHHHHHh--cCCCcEEEE
Q 028129 170 IIGDVADELNLDLVIISMEAIHSKHVDANLLAE--FIPCPVLLL 211 (213)
Q Consensus 170 ~Il~~A~e~~aDLIVmG~~g~~~~Gs~~~~vl~--~a~cPVLvV 211 (213)
+.++..++..+|+|++...-....|.....-++ ...+||+++
T Consensus 38 ~a~~~~~~~~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~ii~~ 81 (124)
T 1srr_A 38 QALDIVTKERPDLVLLDMKIPGMDGIEILKRMKVIDENIRVIIM 81 (124)
T ss_dssp HHHHHHHHHCCSEEEEESCCTTCCHHHHHHHHHHHCTTCEEEEE
T ss_pred HHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHhCCCCCEEEE
Confidence 334444555677777765432123433222222 245666554
No 92
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=71.75 E-value=22 Score=24.81 Aligned_cols=12 Identities=33% Similarity=0.473 Sum_probs=7.2
Q ss_pred HcCCcEEEEccc
Q 028129 177 ELNLDLVIISME 188 (213)
Q Consensus 177 e~~aDLIVmG~~ 188 (213)
+..+|+|++...
T Consensus 47 ~~~~dlvi~d~~ 58 (143)
T 3jte_A 47 CNSIDVVITDMK 58 (143)
T ss_dssp TTTCCEEEEESC
T ss_pred CCCCCEEEEeCC
Confidence 345666666654
No 93
>3r0j_A Possible two component system response transcript positive regulator PHOP; beta-alpha fold, winged helix-turn-helix; 2.50A {Mycobacterium tuberculosis}
Probab=71.73 E-value=20 Score=28.28 Aligned_cols=13 Identities=38% Similarity=0.468 Sum_probs=5.9
Q ss_pred HHHcCCcEEEEcc
Q 028129 175 ADELNLDLVIISM 187 (213)
Q Consensus 175 A~e~~aDLIVmG~ 187 (213)
.++..+|+|++..
T Consensus 63 ~~~~~~dlvllD~ 75 (250)
T 3r0j_A 63 ARETRPDAVILDV 75 (250)
T ss_dssp HHHHCCSEEEEES
T ss_pred HHhCCCCEEEEeC
Confidence 3334455555543
No 94
>1kgs_A DRRD, DNA binding response regulator D; DNA-binding protein, ALPH-beta sandwich, winged-helix, helix helix, DNA binding protein; HET: DNA MSE; 1.50A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nnn_A*
Probab=71.70 E-value=24 Score=26.91 Aligned_cols=43 Identities=19% Similarity=0.064 Sum_probs=23.5
Q ss_pred HHHHHHHHHcCCcEEEEcccCCCCCCchHHHHHhc--CCCcEEEE
Q 028129 169 AIIGDVADELNLDLVIISMEAIHSKHVDANLLAEF--IPCPVLLL 211 (213)
Q Consensus 169 ~~Il~~A~e~~aDLIVmG~~g~~~~Gs~~~~vl~~--a~cPVLvV 211 (213)
++.++..++..+|+|++...-....|.....-+++ ..+||+++
T Consensus 36 ~~a~~~~~~~~~dlvllD~~l~~~~g~~~~~~lr~~~~~~~ii~l 80 (225)
T 1kgs_A 36 EEGMYMALNEPFDVVILDIMLPVHDGWEILKSMRESGVNTPVLML 80 (225)
T ss_dssp HHHHHHHHHSCCSEEEEESCCSSSCHHHHHHHHHHTTCCCCEEEE
T ss_pred HHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCCEEEE
Confidence 34445566677888888765432234433333332 35777765
No 95
>3cfy_A Putative LUXO repressor protein; structural genomics, unknown function, uncharacterized protein, signal receiver domain; 2.50A {Vibrio parahaemolyticus rimd 2210633}
Probab=71.36 E-value=19 Score=25.19 Aligned_cols=17 Identities=12% Similarity=0.286 Sum_probs=8.9
Q ss_pred HHHHHHcCCcEEEEccc
Q 028129 172 GDVADELNLDLVIISME 188 (213)
Q Consensus 172 l~~A~e~~aDLIVmG~~ 188 (213)
++..++..+|+|++...
T Consensus 41 ~~~l~~~~~dlvllD~~ 57 (137)
T 3cfy_A 41 IQFIERSKPQLIILDLK 57 (137)
T ss_dssp HHHHHHHCCSEEEECSB
T ss_pred HHHHHhcCCCEEEEecC
Confidence 34444455666666554
No 96
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}
Probab=71.10 E-value=23 Score=25.08 Aligned_cols=20 Identities=5% Similarity=0.056 Sum_probs=11.4
Q ss_pred HHHHHHHHcCCcEEEEcccC
Q 028129 170 IIGDVADELNLDLVIISMEA 189 (213)
Q Consensus 170 ~Il~~A~e~~aDLIVmG~~g 189 (213)
+.++..++.++|+|++...-
T Consensus 52 ~a~~~l~~~~~dlii~d~~l 71 (152)
T 3eul_A 52 AALELIKAHLPDVALLDYRM 71 (152)
T ss_dssp HHHHHHHHHCCSEEEEETTC
T ss_pred HHHHHHHhcCCCEEEEeCCC
Confidence 44444555567777776543
No 97
>3tqr_A Phosphoribosylglycinamide formyltransferase; purines, pyrimidines, nucleosides, nucleotides; HET: NHE; 1.97A {Coxiella burnetii} SCOP: c.65.1.0
Probab=70.97 E-value=25 Score=28.24 Aligned_cols=87 Identities=10% Similarity=0.024 Sum_probs=53.0
Q ss_pred CCcEEEEeeCCCCCCCHHHHHHHHHHHHHHhhcCCEEEEEEEeCCCCCChhhHHHHHHHHHHHHHhCCCCceeEEEEEcc
Q 028129 83 FKHLLLPITDQNPYLSEGTRQAAATTAALAKKYGADITVVVIDERQKESLPEHENRLSSIRWHLSEGGFQEFRLLERLGE 162 (213)
Q Consensus 83 ~k~ILV~vD~~~~~~S~~s~~Al~~A~~LA~~~~a~L~ll~V~~~~~~~~~~~~~~l~~~~~~l~~~g~~~~~v~~~v~~ 162 (213)
.++|.|-+. |+....+++-.+..-- .++++.+|....+.. .. .+..++.|+. +...-..
T Consensus 5 ~~riavl~S-----G~Gsnl~all~~~~~~--~~~eI~~Vis~~~~a------~~-----~~~A~~~gIp---~~~~~~~ 63 (215)
T 3tqr_A 5 PLPIVVLIS-----GNGTNLQAIIGAIQKG--LAIEIRAVISNRADA------YG-----LKRAQQADIP---THIIPHE 63 (215)
T ss_dssp CEEEEEEES-----SCCHHHHHHHHHHHTT--CSEEEEEEEESCTTC------HH-----HHHHHHTTCC---EEECCGG
T ss_pred CcEEEEEEe-----CCcHHHHHHHHHHHcC--CCCEEEEEEeCCcch------HH-----HHHHHHcCCC---EEEeCcc
Confidence 357888888 7777777776664322 456666655543321 11 2345667888 4321111
Q ss_pred --cC-CchHHHHHHHHHHcCCcEEEEcccCC
Q 028129 163 --GS-SKPTAIIGDVADELNLDLVIISMEAI 190 (213)
Q Consensus 163 --G~-~~p~~~Il~~A~e~~aDLIVmG~~g~ 190 (213)
.+ ..-.+++++..+++++|+||+...++
T Consensus 64 ~~~~r~~~d~~~~~~l~~~~~Dliv~agy~~ 94 (215)
T 3tqr_A 64 EFPSRTDFESTLQKTIDHYDPKLIVLAGFMR 94 (215)
T ss_dssp GSSSHHHHHHHHHHHHHTTCCSEEEESSCCS
T ss_pred ccCchhHhHHHHHHHHHhcCCCEEEEccchh
Confidence 10 01246899999999999999988765
No 98
>3kyj_B CHEY6 protein, putative histidine protein kinase; protein-protein interaction, histidine kinase, response regulator, phosphorylation; 1.40A {Rhodobacter sphaeroides} PDB: 3kyi_B*
Probab=70.85 E-value=24 Score=24.73 Aligned_cols=43 Identities=16% Similarity=0.125 Sum_probs=22.7
Q ss_pred HHHHHHHHHc-CCcEEEEcccCCCCCCchHHHHHh-cCCCcEEEE
Q 028129 169 AIIGDVADEL-NLDLVIISMEAIHSKHVDANLLAE-FIPCPVLLL 211 (213)
Q Consensus 169 ~~Il~~A~e~-~aDLIVmG~~g~~~~Gs~~~~vl~-~a~cPVLvV 211 (213)
++.++..++. .+|+|++...-....|..-...++ ..++|++++
T Consensus 49 ~~al~~l~~~~~~dlvilD~~l~~~~g~~~~~~lr~~~~~~iiil 93 (145)
T 3kyj_B 49 QEALDKLAAQPNVDLILLDIEMPVMDGMEFLRHAKLKTRAKICML 93 (145)
T ss_dssp HHHHHHHHHCTTCCEEEECTTSCCCTTCHHHHHHHHHCCCEEC-C
T ss_pred HHHHHHHhcCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCeEEE
Confidence 3444555556 788888877533224554443332 344666543
No 99
>1ys7_A Transcriptional regulatory protein PRRA; response regulator, DNA binding domain, phosphorylation; 1.58A {Mycobacterium tuberculosis} SCOP: a.4.6.1 c.23.1.1 PDB: 1ys6_A
Probab=70.82 E-value=26 Score=26.88 Aligned_cols=43 Identities=19% Similarity=0.065 Sum_probs=23.3
Q ss_pred HHHHHHHHHcCCcEEEEcccCCCCCCchHHHHHh--cCCCcEEEE
Q 028129 169 AIIGDVADELNLDLVIISMEAIHSKHVDANLLAE--FIPCPVLLL 211 (213)
Q Consensus 169 ~~Il~~A~e~~aDLIVmG~~g~~~~Gs~~~~vl~--~a~cPVLvV 211 (213)
++.++..++..+|+|++...-....|.....-++ ...+||+++
T Consensus 41 ~~a~~~~~~~~~dlvllD~~l~~~~g~~~~~~l~~~~~~~~ii~l 85 (233)
T 1ys7_A 41 AEALRSATENRPDAIVLDINMPVLDGVSVVTALRAMDNDVPVCVL 85 (233)
T ss_dssp HHHHHHHHHSCCSEEEEESSCSSSCHHHHHHHHHHTTCCCCEEEE
T ss_pred HHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCCEEEE
Confidence 3444555667788888876533223444333333 246777665
No 100
>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A
Probab=70.73 E-value=5.8 Score=28.20 Aligned_cols=10 Identities=20% Similarity=0.351 Sum_probs=4.3
Q ss_pred cCCcEEEEcc
Q 028129 178 LNLDLVIISM 187 (213)
Q Consensus 178 ~~aDLIVmG~ 187 (213)
..+|+||+..
T Consensus 66 ~~~dlvi~D~ 75 (146)
T 4dad_A 66 DAFDILMIDG 75 (146)
T ss_dssp TTCSEEEEEC
T ss_pred CCCCEEEEeC
Confidence 3444444443
No 101
>3ecs_A Translation initiation factor EIF-2B subunit alpha; eukaryotic translation initiation factor 2balpha (EIF2balpha); 2.65A {Homo sapiens}
Probab=70.50 E-value=10 Score=32.51 Aligned_cols=83 Identities=16% Similarity=0.167 Sum_probs=48.4
Q ss_pred HHHhhcCCEEEEEEEeCCCCCChhhHHHHHHHHHHHHHhCCCCceeEEEEEcccCCchHHHHHHHHHHcCCcEEEEcccC
Q 028129 110 ALAKKYGADITVVVIDERQKESLPEHENRLSSIRWHLSEGGFQEFRLLERLGEGSSKPTAIIGDVADELNLDLVIISMEA 189 (213)
Q Consensus 110 ~LA~~~~a~L~ll~V~~~~~~~~~~~~~~l~~~~~~l~~~g~~~~~v~~~v~~G~~~p~~~Il~~A~e~~aDLIVmG~~g 189 (213)
..|.+.|-++++++....+. . ++ ..+.|.+.+.|++ +.... .+ ....+++ ++|.+++|+.+
T Consensus 139 ~~A~~~gk~~~V~v~EsrP~-~--qG----~~la~~L~~~gI~---vtli~-Ds---a~~~~m~-----~vd~VivGAd~ 199 (315)
T 3ecs_A 139 EAAVAAKKRFSVYVTESQPD-L--SG----KKMAKALCHLNVP---VTVVL-DA---AVGYIME-----KADLVIVGAEG 199 (315)
T ss_dssp HHHHTTTCCEEEEEECCTTT-T--HH----HHHHHHHHTTTCC---EEEEC-GG---GHHHHGG-----GCSEEEEECSE
T ss_pred HHHHHcCCeEEEEEecCCCc-c--hH----HHHHHHHHHcCCC---EEEEe-hh---HHHHHHH-----hCCEEEECceE
Confidence 34444566777665544332 1 11 2345778888998 65332 21 2333332 69999999975
Q ss_pred CCCC-------Cch-HHHHHhcCCCcEEEE
Q 028129 190 IHSK-------HVD-ANLLAEFIPCPVLLL 211 (213)
Q Consensus 190 ~~~~-------Gs~-~~~vl~~a~cPVLvV 211 (213)
-... |.- -..++++..+||+++
T Consensus 200 i~~nG~v~nkiGT~~iAl~Ak~~~vP~~V~ 229 (315)
T 3ecs_A 200 VVENGGIINKIGTNQMAVCAKAQNKPFYVV 229 (315)
T ss_dssp ECTTSCEEEETTHHHHHHHHHHTTCCEEEE
T ss_pred EecCCCeeehhhhHHHHHHHHHhCCCEEEE
Confidence 4222 332 233488899999987
No 102
>2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A
Probab=70.10 E-value=22 Score=24.62 Aligned_cols=21 Identities=10% Similarity=0.015 Sum_probs=10.4
Q ss_pred HHHHHHHHHHc--CCcEEEEccc
Q 028129 168 TAIIGDVADEL--NLDLVIISME 188 (213)
Q Consensus 168 ~~~Il~~A~e~--~aDLIVmG~~ 188 (213)
.-.+++..++. +.-+|++...
T Consensus 73 g~~~~~~l~~~~~~~~ii~ls~~ 95 (137)
T 2pln_A 73 ALSFVSRIKEKHSSIVVLVSSDN 95 (137)
T ss_dssp HHHHHHHHHHHSTTSEEEEEESS
T ss_pred HHHHHHHHHhcCCCccEEEEeCC
Confidence 34445544443 4455666554
No 103
>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei}
Probab=69.84 E-value=18 Score=26.98 Aligned_cols=42 Identities=7% Similarity=0.025 Sum_probs=20.7
Q ss_pred HHHHHHHHcCCcEEEEcccCCCCCCchHHHHHh--cCCCcEEEE
Q 028129 170 IIGDVADELNLDLVIISMEAIHSKHVDANLLAE--FIPCPVLLL 211 (213)
Q Consensus 170 ~Il~~A~e~~aDLIVmG~~g~~~~Gs~~~~vl~--~a~cPVLvV 211 (213)
+.++..++..+|+|++...-....|.....-++ ...+||+++
T Consensus 42 ~al~~~~~~~~dlvl~D~~lp~~~g~~~~~~l~~~~~~~~ii~l 85 (184)
T 3rqi_A 42 EALKLAGAEKFEFITVXLHLGNDSGLSLIAPLCDLQPDARILVL 85 (184)
T ss_dssp HHHHHHTTSCCSEEEECSEETTEESHHHHHHHHHHCTTCEEEEE
T ss_pred HHHHHHhhCCCCEEEEeccCCCccHHHHHHHHHhcCCCCCEEEE
Confidence 344555666677777765422113443332222 345666654
No 104
>3da8_A Probable 5'-phosphoribosylglycinamide formyltransferase PURN; glycinamide ribonucleotide transformylase, structure; 1.30A {Mycobacterium tuberculosis} PDB: 3dcj_A*
Probab=69.81 E-value=25 Score=28.18 Aligned_cols=87 Identities=14% Similarity=0.037 Sum_probs=52.6
Q ss_pred CCCcEEEEeeCCCCCCCHHHHHHHHHHHHHHhhcCCEEEEEEEeCCCCCChhhHHHHHHHHHHHHHhCCCCceeEEEEEc
Q 028129 82 NFKHLLLPITDQNPYLSEGTRQAAATTAALAKKYGADITVVVIDERQKESLPEHENRLSSIRWHLSEGGFQEFRLLERLG 161 (213)
Q Consensus 82 ~~k~ILV~vD~~~~~~S~~s~~Al~~A~~LA~~~~a~L~ll~V~~~~~~~~~~~~~~l~~~~~~l~~~g~~~~~v~~~v~ 161 (213)
+.++|+|-+. |+....+++-.+.. ...++++.+|...... ...+..++.|+. +...-.
T Consensus 11 ~~~ri~vl~S-----G~gsnl~all~~~~--~~~~~eI~~Vis~~~a------------~~~~~A~~~gIp---~~~~~~ 68 (215)
T 3da8_A 11 APARLVVLAS-----GTGSLLRSLLDAAV--GDYPARVVAVGVDREC------------RAAEIAAEASVP---VFTVRL 68 (215)
T ss_dssp SSEEEEEEES-----SCCHHHHHHHHHSS--TTCSEEEEEEEESSCC------------HHHHHHHHTTCC---EEECCG
T ss_pred CCcEEEEEEe-----CChHHHHHHHHHHh--ccCCCeEEEEEeCCch------------HHHHHHHHcCCC---EEEeCc
Confidence 3568988888 77777666665542 2345566555443321 113456677888 432211
Q ss_pred c-cCCc--hHHHHHHHHHHcCCcEEEEcccCC
Q 028129 162 E-GSSK--PTAIIGDVADELNLDLVIISMEAI 190 (213)
Q Consensus 162 ~-G~~~--p~~~Il~~A~e~~aDLIVmG~~g~ 190 (213)
. ..+. -.+++++..+++++|+||+...++
T Consensus 69 ~~~~~r~~~d~~~~~~l~~~~~Dlivlagy~~ 100 (215)
T 3da8_A 69 ADHPSRDAWDVAITAATAAHEPDLVVSAGFMR 100 (215)
T ss_dssp GGSSSHHHHHHHHHHHHHTTCCSEEEEEECCS
T ss_pred ccccchhhhhHHHHHHHHhhCCCEEEEcCchh
Confidence 1 1000 146789999999999999988765
No 105
>1xhf_A DYE resistance, aerobic respiration control protein ARCA; two-component system, gene regulation, transcription factor, anoxic redox control; 2.15A {Escherichia coli} SCOP: c.23.1.1 PDB: 1xhe_A
Probab=69.55 E-value=23 Score=23.89 Aligned_cols=43 Identities=14% Similarity=0.189 Sum_probs=22.6
Q ss_pred HHHHHHHHHcCCcEEEEcccCCCCCCchHHHHHh-cCCCcEEEE
Q 028129 169 AIIGDVADELNLDLVIISMEAIHSKHVDANLLAE-FIPCPVLLL 211 (213)
Q Consensus 169 ~~Il~~A~e~~aDLIVmG~~g~~~~Gs~~~~vl~-~a~cPVLvV 211 (213)
.+.++..++.++|+|++...-....|..-...++ ...+|++++
T Consensus 37 ~~a~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~ii~~ 80 (123)
T 1xhf_A 37 AEMHQILSEYDINLVIMDINLPGKNGLLLARELREQANVALMFL 80 (123)
T ss_dssp HHHHHHHHHSCCSEEEECSSCSSSCHHHHHHHHHHHCCCEEEEE
T ss_pred HHHHHHHhcCCCCEEEEcCCCCCCCHHHHHHHHHhCCCCcEEEE
Confidence 3444555667788888876533223433222222 246676654
No 106
>2qsj_A DNA-binding response regulator, LUXR family; structural genomics, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi dss-3}
Probab=69.21 E-value=27 Score=24.68 Aligned_cols=43 Identities=12% Similarity=0.133 Sum_probs=21.1
Q ss_pred HHHHHHHHH-cCCcEEEEcccCCCCCCchHHHHHh--cCCCcEEEE
Q 028129 169 AIIGDVADE-LNLDLVIISMEAIHSKHVDANLLAE--FIPCPVLLL 211 (213)
Q Consensus 169 ~~Il~~A~e-~~aDLIVmG~~g~~~~Gs~~~~vl~--~a~cPVLvV 211 (213)
++.++..++ ..+|+||+...-....|.....-++ ...+||+++
T Consensus 39 ~~a~~~l~~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii~l 84 (154)
T 2qsj_A 39 SDALAFLEADNTVDLILLDVNLPDAEAIDGLVRLKRFDPSNAVALI 84 (154)
T ss_dssp HHHHHHHHTTCCCSEEEECC------CHHHHHHHHHHCTTSEEEEC
T ss_pred HHHHHHHhccCCCCEEEEeCCCCCCchHHHHHHHHHhCCCCeEEEE
Confidence 445555555 7788888876532223443332232 245677664
No 107
>1efv_A Electron transfer flavoprotein; electron transport, glutaric acidemia type II; HET: FAD AMP; 2.10A {Homo sapiens} SCOP: c.26.2.3 c.31.1.2 PDB: 2a1u_A* 1t9g_R* 2a1t_R*
Probab=69.18 E-value=9.4 Score=32.56 Aligned_cols=90 Identities=13% Similarity=0.131 Sum_probs=53.0
Q ss_pred EEEEeeCCCCCCCHHHHHHHHHHHHHHhhcCCEEEEEEEeCCCCCChhhHHHHHHHHHHHHHhCCCCce-eEEEEEcccC
Q 028129 86 LLLPITDQNPYLSEGTRQAAATTAALAKKYGADITVVVIDERQKESLPEHENRLSSIRWHLSEGGFQEF-RLLERLGEGS 164 (213)
Q Consensus 86 ILV~vD~~~~~~S~~s~~Al~~A~~LA~~~~a~L~ll~V~~~~~~~~~~~~~~l~~~~~~l~~~g~~~~-~v~~~v~~G~ 164 (213)
|||-.+.++...++.+.+++..|..|+. +++++.+.... ++ .+++.+...|.+.. .+......+.
T Consensus 4 ~lv~~e~~~g~l~~~~~eal~aA~~La~----~V~av~~G~~~-------~~---~~~~a~~a~GaDkv~~v~d~~l~~~ 69 (315)
T 1efv_A 4 TLVIAEHANDSLAPITLNTITAATRLGG----EVSCLVAGTKC-------DK---VAQDLCKVAGIAKVLVAQHDVYKGL 69 (315)
T ss_dssp EEEECCEETTEECTHHHHHHHHHHTTTS----EEEEEEEESCC-------HH---HHHHHHHSTTCCEEEEEECGGGTTC
T ss_pred EEEEEEccCCCcCHHHHHHHHHHHHhcC----cEEEEEECCch-------HH---HHHHHHHhcCCCEEEEecCchhccC
Confidence 6666664334456788899988877762 88888777531 11 22223245577631 1111001111
Q ss_pred --CchHHHHHHHHHHcCCcEEEEcccC
Q 028129 165 --SKPTAIIGDVADELNLDLVIISMEA 189 (213)
Q Consensus 165 --~~p~~~Il~~A~e~~aDLIVmG~~g 189 (213)
...+..|.+.+++.++|+|++|+..
T Consensus 70 ~~~~~a~~La~li~~~~pdlVL~g~ts 96 (315)
T 1efv_A 70 LPEELTPLILATQKQFNYTHICAGASA 96 (315)
T ss_dssp CHHHHHHHHHHHHHHHCCSEEEEESSH
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 0134677788888899999999954
No 108
>3crn_A Response regulator receiver domain protein, CHEY-; structural genomics, signal regulator receiver domain; HET: PHD; 1.58A {Methanospirillum hungatei jf-1}
Probab=69.16 E-value=25 Score=24.25 Aligned_cols=19 Identities=5% Similarity=-0.003 Sum_probs=10.6
Q ss_pred HHHHHHHHcCCcEEEEccc
Q 028129 170 IIGDVADELNLDLVIISME 188 (213)
Q Consensus 170 ~Il~~A~e~~aDLIVmG~~ 188 (213)
+.++..++..+|+|++...
T Consensus 38 ~al~~~~~~~~dlvl~D~~ 56 (132)
T 3crn_A 38 EGLAKIENEFFNLALFXIK 56 (132)
T ss_dssp HHHHHHHHSCCSEEEECSB
T ss_pred HHHHHHhcCCCCEEEEecC
Confidence 3344445556666666654
No 109
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=68.65 E-value=12 Score=26.27 Aligned_cols=18 Identities=17% Similarity=0.176 Sum_probs=9.4
Q ss_pred HHHHHHHHcCCcEEEEcc
Q 028129 170 IIGDVADELNLDLVIISM 187 (213)
Q Consensus 170 ~Il~~A~e~~aDLIVmG~ 187 (213)
+.++..++.++|+||+..
T Consensus 39 ~a~~~l~~~~~dlvi~d~ 56 (142)
T 2qxy_A 39 EAFTFLRREKIDLVFVDV 56 (142)
T ss_dssp HHHHHHTTSCCSEEEEEC
T ss_pred HHHHHHhccCCCEEEEeC
Confidence 333444445566666655
No 110
>2h31_A Multifunctional protein ADE2; alpha-beta-alpha, ligase, lyase; 2.80A {Homo sapiens}
Probab=67.90 E-value=27 Score=31.17 Aligned_cols=70 Identities=10% Similarity=0.039 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHhCCCCceeEEEEEcccCCchHHHHHHH---HHHcCC-cEEEEcccCCCCCCchHHHHHhcCCCcEEEEc
Q 028129 137 NRLSSIRWHLSEGGFQEFRLLERLGEGSSKPTAIIGDV---ADELNL-DLVIISMEAIHSKHVDANLLAEFIPCPVLLLP 212 (213)
Q Consensus 137 ~~l~~~~~~l~~~g~~~~~v~~~v~~G~~~p~~~Il~~---A~e~~a-DLIVmG~~g~~~~Gs~~~~vl~~a~cPVLvVp 212 (213)
..++++...+.+.|++ ++..+..-. ...+.+.++ +++.++ +.||.|+-+. +--...++..+++||+-||
T Consensus 279 ~~~~~a~~~l~~~gi~---~~v~V~saH-R~p~~~~~~~~~~~~~g~~~viIa~AG~~---a~Lpgvva~~t~~PVIgvP 351 (425)
T 2h31_A 279 GHCEKIKKACGNFGIP---CELRVTSAH-KGPDETLRIKAEYEGDGIPTVFVAVAGRS---NGLGPVMSGNTAYPVISCP 351 (425)
T ss_dssp HHHHHHHHHHHHTTCC---EEEEECCTT-TCHHHHHHHHHHHHTTCCCEEEEEECCSS---CCHHHHHHHHCSSCEEECC
T ss_pred HHHHHHHHHHHHcCCc---eEEeeeecc-CCHHHHHHHHHHHHHCCCCeEEEEEcCcc---cchHhHHhccCCCCEEEee
Confidence 3456666677888888 555554333 344454555 445677 6888777653 4455567888999999887
Q ss_pred C
Q 028129 213 L 213 (213)
Q Consensus 213 ~ 213 (213)
.
T Consensus 352 ~ 352 (425)
T 2h31_A 352 P 352 (425)
T ss_dssp C
T ss_pred C
Confidence 4
No 111
>1s8n_A Putative antiterminator; RV1626, structural genomics, transcriptional antiterminator, component system, PSI; 1.48A {Mycobacterium tuberculosis} SCOP: c.23.1.1 PDB: 1sd5_A
Probab=67.85 E-value=36 Score=25.56 Aligned_cols=19 Identities=26% Similarity=0.326 Sum_probs=10.4
Q ss_pred HHHHHHHHcCCcEEEEccc
Q 028129 170 IIGDVADELNLDLVIISME 188 (213)
Q Consensus 170 ~Il~~A~e~~aDLIVmG~~ 188 (213)
+.++..++..+|+|++...
T Consensus 49 ~al~~~~~~~~dlvi~D~~ 67 (205)
T 1s8n_A 49 EAVELAELHKPDLVIMDVK 67 (205)
T ss_dssp HHHHHHHHHCCSEEEEESS
T ss_pred HHHHHHhhcCCCEEEEeCC
Confidence 3334445556666666654
No 112
>2jba_A Phosphate regulon transcriptional regulatory PROT; transcription factor, sensory transduction, phosphate regula transcription regulation; 1.45A {Escherichia coli} PDB: 2jba_B 1b00_A 2iyn_A 2jb9_A 1zes_A
Probab=67.81 E-value=11 Score=25.68 Aligned_cols=19 Identities=16% Similarity=0.120 Sum_probs=10.5
Q ss_pred HHHHHHHHcCCcEEEEccc
Q 028129 170 IIGDVADELNLDLVIISME 188 (213)
Q Consensus 170 ~Il~~A~e~~aDLIVmG~~ 188 (213)
+.++..++.++|+|++...
T Consensus 37 ~a~~~~~~~~~dlvi~D~~ 55 (127)
T 2jba_A 37 SAVNQLNEPWPDLILLAWM 55 (127)
T ss_dssp HHHTTCSSSCCSEEEEESE
T ss_pred HHHHHHhccCCCEEEEecC
Confidence 3334445556676666554
No 113
>1mvo_A PHOP response regulator; phosphate regulon, transcriptional regulatory protein, alpha/beta doubly wound fold, phosphorylation; 1.60A {Bacillus subtilis} SCOP: c.23.1.1
Probab=67.51 E-value=27 Score=23.98 Aligned_cols=15 Identities=20% Similarity=0.375 Sum_probs=7.2
Q ss_pred HHHHcCCcEEEEccc
Q 028129 174 VADELNLDLVIISME 188 (213)
Q Consensus 174 ~A~e~~aDLIVmG~~ 188 (213)
..++..+|+|++...
T Consensus 42 ~~~~~~~dlvl~D~~ 56 (136)
T 1mvo_A 42 KAETEKPDLIVLDVM 56 (136)
T ss_dssp HHHHHCCSEEEEESS
T ss_pred HHhhcCCCEEEEecC
Confidence 334444555555443
No 114
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=67.26 E-value=10 Score=26.56 Aligned_cols=19 Identities=11% Similarity=0.277 Sum_probs=10.5
Q ss_pred HHHHHHHH-cCCcEEEEccc
Q 028129 170 IIGDVADE-LNLDLVIISME 188 (213)
Q Consensus 170 ~Il~~A~e-~~aDLIVmG~~ 188 (213)
+.++..++ ..+|+||+...
T Consensus 40 ~a~~~l~~~~~~dlvi~D~~ 59 (140)
T 3lua_A 40 KFYSIFKDLDSITLIIMDIA 59 (140)
T ss_dssp HHHTTTTTCCCCSEEEECSC
T ss_pred HHHHHHhcCCCCcEEEEeCC
Confidence 34444455 56666666554
No 115
>2pl1_A Transcriptional regulatory protein PHOP; CHEY-like fold, response regulator, beryllium fluoride, transcription factor, activated, virulence; 1.90A {Escherichia coli} SCOP: c.23.1.1 PDB: 2pkx_A
Probab=66.88 E-value=26 Score=23.47 Aligned_cols=43 Identities=14% Similarity=0.093 Sum_probs=22.8
Q ss_pred HHHHHHHHHcCCcEEEEcccCCCCCCchHHHHHh--cCCCcEEEE
Q 028129 169 AIIGDVADELNLDLVIISMEAIHSKHVDANLLAE--FIPCPVLLL 211 (213)
Q Consensus 169 ~~Il~~A~e~~aDLIVmG~~g~~~~Gs~~~~vl~--~a~cPVLvV 211 (213)
++.++..++..+|+|++...-....|..-..-++ ...+|++++
T Consensus 34 ~~a~~~~~~~~~dlil~D~~l~~~~g~~~~~~l~~~~~~~~ii~~ 78 (121)
T 2pl1_A 34 KEADYYLNEHIPDIAIVDLGLPDEDGLSLIRRWRSNDVSLPILVL 78 (121)
T ss_dssp HHHHHHHHHSCCSEEEECSCCSSSCHHHHHHHHHHTTCCSCEEEE
T ss_pred HHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHhcCCCCCEEEE
Confidence 3445556667788888876533223433222232 245677664
No 116
>1k66_A Phytochrome response regulator RCPB; CHEY homologue, homodimer, APO-protein, (beta/alpha)5, signaling protein; 1.75A {Tolypothrix SP} SCOP: c.23.1.1
Probab=66.83 E-value=29 Score=24.07 Aligned_cols=34 Identities=6% Similarity=0.113 Sum_probs=16.0
Q ss_pred cCCcEEEEcccCCCCCCchHHHHHhc----CCCcEEEE
Q 028129 178 LNLDLVIISMEAIHSKHVDANLLAEF----IPCPVLLL 211 (213)
Q Consensus 178 ~~aDLIVmG~~g~~~~Gs~~~~vl~~----a~cPVLvV 211 (213)
..+|+||+...-....|.....-+++ ..+||+++
T Consensus 61 ~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~ 98 (149)
T 1k66_A 61 PRPAVILLDLNLPGTDGREVLQEIKQDEVLKKIPVVIM 98 (149)
T ss_dssp CCCSEEEECSCCSSSCHHHHHHHHTTSTTGGGSCEEEE
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhCcccCCCeEEEE
Confidence 56677777654321133333333333 34566554
No 117
>2wq7_A RE11660P; lyase-DNA complex, DNA repair, DNA lesion, lyase; HET: TDY Z FAD; 2.00A {Drosophila melanogaster} PDB: 2wb2_A* 2wq6_A* 3cvu_A* 3cvv_A* 3cvy_A* 3cvw_A* 3cvx_A*
Probab=66.56 E-value=33 Score=31.24 Aligned_cols=84 Identities=11% Similarity=0.071 Sum_probs=56.3
Q ss_pred CCHHHHHHHHHHHHHHhh--cCCEEEEEEEeCCCCCC-----hh---hHHHHHHHHHHHHHhCCCCceeEEEEEcccCCc
Q 028129 97 LSEGTRQAAATTAALAKK--YGADITVVVIDERQKES-----LP---EHENRLSSIRWHLSEGGFQEFRLLERLGEGSSK 166 (213)
Q Consensus 97 ~S~~s~~Al~~A~~LA~~--~~a~L~ll~V~~~~~~~-----~~---~~~~~l~~~~~~l~~~g~~~~~v~~~v~~G~~~ 166 (213)
.--....||..|+..+.. .+..+.+|.+.++.... .. -.-+.|.++.+.+.+.|.. +.. ..|+
T Consensus 39 LRl~DN~aL~~A~~~~~~~~~~~pv~~vfi~dp~~~~~~~~~~~r~~Fl~~sL~~L~~~L~~~G~~---L~v--~~g~-- 111 (543)
T 2wq7_A 39 LRLHDNPALSHIFTAANAAPGRYFVRPIFILDPGILDWMQVGANRWRFLQQTLEDLDNQLRKLNSR---LFV--VRGK-- 111 (543)
T ss_dssp CCSTTCHHHHHHHHHHHHSTTTEEEEEEEEECTTGGGCTTSCHHHHHHHHHHHHHHHHHHHHTTCC---CEE--EESC--
T ss_pred cCcchHHHHHHHHHhCccccCCCeEEEEEEECchhhcccCCCHHHHHHHHHHHHHHHHHHHHCCCe---EEE--EeCC--
Confidence 444556788888877754 35567777665543211 11 1234456666778888887 543 3486
Q ss_pred hHHHHHHHHHHcCCcEEEEcc
Q 028129 167 PTAIIGDVADELNLDLVIISM 187 (213)
Q Consensus 167 p~~~Il~~A~e~~aDLIVmG~ 187 (213)
+.+.|.+++++.+++.|+.-.
T Consensus 112 ~~~~l~~l~~~~~~~~v~~~~ 132 (543)
T 2wq7_A 112 PAEVFPRIFKSWRVEMLTFET 132 (543)
T ss_dssp HHHHHHHHHHHTTEEEEEEEC
T ss_pred HHHHHHHHHHHcCCCEEEEec
Confidence 999999999999999998854
No 118
>2qvg_A Two component response regulator; NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.50A {Legionella pneumophila subsp}
Probab=66.49 E-value=30 Score=24.02 Aligned_cols=11 Identities=9% Similarity=0.570 Sum_probs=6.4
Q ss_pred cCCcEEEEccc
Q 028129 178 LNLDLVIISME 188 (213)
Q Consensus 178 ~~aDLIVmG~~ 188 (213)
..+|+||+...
T Consensus 58 ~~~dlii~D~~ 68 (143)
T 2qvg_A 58 IHPKLILLDIN 68 (143)
T ss_dssp CCCSEEEEETT
T ss_pred CCCCEEEEecC
Confidence 45666666554
No 119
>2a0u_A Initiation factor 2B; SGPP, structural genomics, PSI, protein structure initiative eukaryotic initiation factor; 2.10A {Leishmania major} SCOP: c.124.1.5
Probab=66.26 E-value=13 Score=32.63 Aligned_cols=60 Identities=8% Similarity=0.089 Sum_probs=38.4
Q ss_pred HHHHHHhCCCCceeEEEEEcccCCchHHHHHHHHHHcCCcEEEEcccCCCCC-------CchH-HHHHhcCCCcEEEE
Q 028129 142 IRWHLSEGGFQEFRLLERLGEGSSKPTAIIGDVADELNLDLVIISMEAIHSK-------HVDA-NLLAEFIPCPVLLL 211 (213)
Q Consensus 142 ~~~~l~~~g~~~~~v~~~v~~G~~~p~~~Il~~A~e~~aDLIVmG~~g~~~~-------Gs~~-~~vl~~a~cPVLvV 211 (213)
..|.+.+.|++ +.... . .++.-+-++.++|.||+|+..-..+ |.-. ..++++-.+||+|+
T Consensus 229 tA~eL~~~GIp---vtlI~-D------sa~~~~M~~~~Vd~ViVGAD~V~aNG~v~NKiGTy~lAl~Ak~~~vPfyV~ 296 (383)
T 2a0u_A 229 TVYECVQEDIP---CTLIC-D------GAASSLMLNRKIDAVVVGADRICQNGDTANKIGTYNLAVSAKFHGVKLYVA 296 (383)
T ss_dssp HHHHHHHTTCC---EEEEC-G------GGHHHHHHHSCCCEEEECCSEECTTCCEEEETTHHHHHHHHHHTTCCEEEE
T ss_pred HHHHHHHcCCC---EEEEe-h------hHHHHHhhcCCCCEEEECccEEecCCCEeecccHHHHHHHHHHcCCCEEEe
Confidence 34677888998 55322 1 2333344556799999999754223 3333 23488999999986
No 120
>2ayx_A Sensor kinase protein RCSC; two independent structural domains, transferase; NMR {Escherichia coli} SCOP: c.23.1.1 c.23.1.6 PDB: 2ayz_A 2ayy_A
Probab=65.97 E-value=20 Score=28.54 Aligned_cols=42 Identities=12% Similarity=0.079 Sum_probs=22.2
Q ss_pred HHHHHHHHcCCcEEEEcccCCCCCCchHHHHHh--cCCCcEEEE
Q 028129 170 IIGDVADELNLDLVIISMEAIHSKHVDANLLAE--FIPCPVLLL 211 (213)
Q Consensus 170 ~Il~~A~e~~aDLIVmG~~g~~~~Gs~~~~vl~--~a~cPVLvV 211 (213)
+.++..++..+|+|+|...-....|.....-++ ...+||+++
T Consensus 164 eal~~l~~~~~dlvl~D~~mp~~~G~~l~~~ir~~~~~~piI~l 207 (254)
T 2ayx_A 164 DALNVLSKNHIDIVLSDVNMPNMDGYRLTQRIRQLGLTLPVIGV 207 (254)
T ss_dssp HHHHHHHHSCCSEEEEEESSCSSCCHHHHHHHHHHHCCSCEEEE
T ss_pred HHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHHhcCCCCcEEEE
Confidence 334455566778888766433224554333332 235677654
No 121
>1zgz_A Torcad operon transcriptional regulatory protein; two-component system, gene regulation, transcription factor, respiratory system; 1.80A {Escherichia coli} SCOP: c.23.1.1
Probab=65.95 E-value=27 Score=23.43 Aligned_cols=43 Identities=9% Similarity=0.190 Sum_probs=21.9
Q ss_pred HHHHHHHHHcCCcEEEEcccCCCCCCchHHHHHh-cCCCcEEEE
Q 028129 169 AIIGDVADELNLDLVIISMEAIHSKHVDANLLAE-FIPCPVLLL 211 (213)
Q Consensus 169 ~~Il~~A~e~~aDLIVmG~~g~~~~Gs~~~~vl~-~a~cPVLvV 211 (213)
.+.++..++..+|+|++...-....|......++ ...+|++++
T Consensus 36 ~~~~~~~~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~ii~~ 79 (122)
T 1zgz_A 36 AGLREIMQNQSVDLILLDINLPDENGLMLTRALRERSTVGIILV 79 (122)
T ss_dssp HHHHHHHHHSCCSEEEEESCCSSSCHHHHHHHHHTTCCCEEEEE
T ss_pred HHHHHHHhcCCCCEEEEeCCCCCCChHHHHHHHHhcCCCCEEEE
Confidence 3445555666777777766432223433322233 344666554
No 122
>2ywr_A Phosphoribosylglycinamide formyltransferase; rossmann fold, structural genomics, NPPSFA; 1.77A {Aquifex aeolicus}
Probab=65.77 E-value=37 Score=26.95 Aligned_cols=23 Identities=9% Similarity=0.029 Sum_probs=19.7
Q ss_pred HHHHHHHHHHcCCcEEEEcccCC
Q 028129 168 TAIIGDVADELNLDLVIISMEAI 190 (213)
Q Consensus 168 ~~~Il~~A~e~~aDLIVmG~~g~ 190 (213)
.+++++..+++++|+||+...++
T Consensus 69 ~~~~~~~l~~~~~Dliv~a~y~~ 91 (216)
T 2ywr_A 69 EERMALELKKKGVELVVLAGFMR 91 (216)
T ss_dssp HHHHHHHHHHTTCCEEEESSCCS
T ss_pred hHHHHHHHHhcCCCEEEEeCchh
Confidence 36788999999999999988765
No 123
>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A
Probab=65.67 E-value=24 Score=26.53 Aligned_cols=42 Identities=5% Similarity=0.026 Sum_probs=19.1
Q ss_pred HHHHHHHHcCCcEEEEcccCCCCCCchHHHHHh--cCCCcEEEE
Q 028129 170 IIGDVADELNLDLVIISMEAIHSKHVDANLLAE--FIPCPVLLL 211 (213)
Q Consensus 170 ~Il~~A~e~~aDLIVmG~~g~~~~Gs~~~~vl~--~a~cPVLvV 211 (213)
+.++..++..+|+|++...-....|.....-++ ...+||+++
T Consensus 39 ~al~~~~~~~~dlvl~D~~lp~~~g~~~~~~l~~~~~~~~ii~l 82 (208)
T 1yio_A 39 TFLEHRRPEQHGCLVLDMRMPGMSGIELQEQLTAISDGIPIVFI 82 (208)
T ss_dssp HHHHHCCTTSCEEEEEESCCSSSCHHHHHHHHHHTTCCCCEEEE
T ss_pred HHHHhhhccCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCCEEEE
Confidence 334444555666666655432123433322232 234566554
No 124
>1dbw_A Transcriptional regulatory protein FIXJ; doubly wound five-stranded beta/alpha fold, nitrogen fixatio regulation; HET: 15P; 1.60A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1dck_A* 1dcm_A 1d5w_A*
Probab=65.43 E-value=29 Score=23.57 Aligned_cols=20 Identities=5% Similarity=0.152 Sum_probs=11.0
Q ss_pred HHHHHHHHHcCCcEEEEccc
Q 028129 169 AIIGDVADELNLDLVIISME 188 (213)
Q Consensus 169 ~~Il~~A~e~~aDLIVmG~~ 188 (213)
++.++..++..+|+|++...
T Consensus 37 ~~~~~~~~~~~~dlvi~D~~ 56 (126)
T 1dbw_A 37 EAFLAFAPDVRNGVLVTDLR 56 (126)
T ss_dssp HHHHHHGGGCCSEEEEEECC
T ss_pred HHHHHHHhcCCCCEEEEECC
Confidence 34444555556666666554
No 125
>2a9o_A Response regulator; essential protein, YYCF/YYCG homolog, signaling protein; 1.65A {Streptococcus pneumoniae} SCOP: c.23.1.1 PDB: 1nxo_A 1nxs_A 1nxv_A 1nxw_A 1nxx_A 1nxp_A 2a9p_A 2a9q_A 1nxt_A* 2a9r_A*
Probab=65.36 E-value=27 Score=23.23 Aligned_cols=41 Identities=12% Similarity=0.195 Sum_probs=20.2
Q ss_pred HHHHHHHcCCcEEEEcccCCCCCCchHHHHH-hcCCCcEEEE
Q 028129 171 IGDVADELNLDLVIISMEAIHSKHVDANLLA-EFIPCPVLLL 211 (213)
Q Consensus 171 Il~~A~e~~aDLIVmG~~g~~~~Gs~~~~vl-~~a~cPVLvV 211 (213)
.++..++.++|+|++...-....|......+ ....+|++++
T Consensus 37 a~~~~~~~~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~ii~~ 78 (120)
T 2a9o_A 37 ALEQFEAEQPDIIILDLMLPEIDGLEVAKTIRKTSSVPILML 78 (120)
T ss_dssp HHHHHHHHCCSEEEECSSCSSSCHHHHHHHHHHHCCCCEEEE
T ss_pred HHHHHHhCCCCEEEEeccCCCCCHHHHHHHHHhCCCCCEEEE
Confidence 3344455667777776643212343322222 2345666654
No 126
>1tmy_A CHEY protein, TMY; chemotaxis, phosphoryl transfer, signal transduction; 1.90A {Thermotoga maritima} SCOP: c.23.1.1 PDB: 2tmy_A 3tmy_A 4tmy_A 1u0s_Y
Probab=65.03 E-value=28 Score=23.28 Aligned_cols=16 Identities=25% Similarity=0.441 Sum_probs=8.3
Q ss_pred HHHHHcCCcEEEEccc
Q 028129 173 DVADELNLDLVIISME 188 (213)
Q Consensus 173 ~~A~e~~aDLIVmG~~ 188 (213)
+..++.++|+|++...
T Consensus 41 ~~~~~~~~dlil~D~~ 56 (120)
T 1tmy_A 41 EKYKELKPDIVTMDIT 56 (120)
T ss_dssp HHHHHHCCSEEEEECS
T ss_pred HHHHhcCCCEEEEeCC
Confidence 3344445666666543
No 127
>3n53_A Response regulator receiver modulated diguanylate; diguanylate cyclase, protein structure I II(PSI II), NYSGXRC, structural genomics; 2.20A {Pelobacter carbinolicus} SCOP: c.23.1.0
Probab=64.91 E-value=32 Score=23.85 Aligned_cols=43 Identities=26% Similarity=0.284 Sum_probs=21.4
Q ss_pred HHHHHHHHHcCCcEEEEcccCCCCCCchHHHHHhc----CCCcEEEE
Q 028129 169 AIIGDVADELNLDLVIISMEAIHSKHVDANLLAEF----IPCPVLLL 211 (213)
Q Consensus 169 ~~Il~~A~e~~aDLIVmG~~g~~~~Gs~~~~vl~~----a~cPVLvV 211 (213)
++.++..++.++|+|++...-....|..-..-+++ ..+||+++
T Consensus 36 ~~a~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~ 82 (140)
T 3n53_A 36 KEALEQIDHHHPDLVILDMDIIGENSPNLCLKLKRSKGLKNVPLILL 82 (140)
T ss_dssp HHHHHHHHHHCCSEEEEETTC------CHHHHHHTSTTCTTCCEEEE
T ss_pred HHHHHHHhcCCCCEEEEeCCCCCCcHHHHHHHHHcCcccCCCCEEEE
Confidence 34445556667888888765332234443333333 45777664
No 128
>2nz2_A Argininosuccinate synthase; amino-acid biosynthesis, aspartate, citrulline, ST genomics, structural genomics consortium, SGC, ligase; HET: CIR; 2.40A {Homo sapiens}
Probab=63.96 E-value=47 Score=29.28 Aligned_cols=91 Identities=13% Similarity=0.021 Sum_probs=55.9
Q ss_pred CCcEEEEeeCCCCCCCHHHHHHHHHHHHHHhhcCCEEEEEEEeCCCCCChhhHHHHHHHHHHHHHhCCCCceeEEEE---
Q 028129 83 FKHLLLPITDQNPYLSEGTRQAAATTAALAKKYGADITVVVIDERQKESLPEHENRLSSIRWHLSEGGFQEFRLLER--- 159 (213)
Q Consensus 83 ~k~ILV~vD~~~~~~S~~s~~Al~~A~~LA~~~~a~L~ll~V~~~~~~~~~~~~~~l~~~~~~l~~~g~~~~~v~~~--- 159 (213)
.++|++++. |...|.-++.++.+ .|.++..++++...... ++.+++.....|+..+.+...
T Consensus 5 ~~kVvvalS-----GGlDSsvll~lL~e----~G~eV~av~vd~g~~~e-------~e~a~~~A~~lGi~~~~vvd~~~e 68 (413)
T 2nz2_A 5 KGSVVLAYS-----GGLDTSCILVWLKE----QGYDVIAYLANIGQKED-------FEEARKKALKLGAKKVFIEDVSRE 68 (413)
T ss_dssp CEEEEEECC-----SSHHHHHHHHHHHH----TTEEEEEEEEESSCCCC-------HHHHHHHHHHHTCSEEEEEECHHH
T ss_pred CCeEEEEEc-----ChHHHHHHHHHHHH----cCCEEEEEEEECCcHHH-------HHHHHHHHHHhCCCEEEEEeChHH
Confidence 468999999 78777777666543 37788888888765322 222333333335542222100
Q ss_pred -------------------EcccCCc-----hHHHHHHHHHHcCCcEEEEcccCC
Q 028129 160 -------------------LGEGSSK-----PTAIIGDVADELNLDLVIISMEAI 190 (213)
Q Consensus 160 -------------------v~~G~~~-----p~~~Il~~A~e~~aDLIVmG~~g~ 190 (213)
...|. . ....+.++|++.++|.|+.|+++.
T Consensus 69 f~~~~~~~~i~~~a~~e~~y~~g~-~~aRp~i~~~l~~~A~~~Ga~~IatGh~~~ 122 (413)
T 2nz2_A 69 FVEEFIWPAIQSSALYEDRYLLGT-SLARPCIARKQVEIAQREGAKYVSHGATGK 122 (413)
T ss_dssp HHHHTHHHHHHTTCCBTTTBCCTT-TTHHHHHHHHHHHHHHHHTCSEEECCCCTT
T ss_pred HHHHHHHHHHHhCccccccccccc-ccchHHHHHHHHHHHHHcCCCEEEECCcCc
Confidence 00121 1 146778999999999999999874
No 129
>2oqr_A Sensory transduction protein REGX3; response regulator, winged-helix-turn-helix, DNA-binding, 3D swapping, two component system; 2.03A {Mycobacterium tuberculosis H37RV}
Probab=63.89 E-value=44 Score=25.46 Aligned_cols=42 Identities=14% Similarity=0.120 Sum_probs=21.9
Q ss_pred HHHHHHHHcCCcEEEEcccCCCCCCchHHHHHh-cCCCcEEEE
Q 028129 170 IIGDVADELNLDLVIISMEAIHSKHVDANLLAE-FIPCPVLLL 211 (213)
Q Consensus 170 ~Il~~A~e~~aDLIVmG~~g~~~~Gs~~~~vl~-~a~cPVLvV 211 (213)
+.++..++..+|+|++...-....|.....-++ ...+||+++
T Consensus 39 ~al~~~~~~~~dlvllD~~l~~~~g~~~~~~l~~~~~~~ii~l 81 (230)
T 2oqr_A 39 AALAEFDRAGADIVLLDLMLPGMSGTDVCKQLRARSSVPVIMV 81 (230)
T ss_dssp HHHHHHHHHCCSEEEEESSCSSSCHHHHHHHHHHHCSCSEEEE
T ss_pred HHHHHHhccCCCEEEEECCCCCCCHHHHHHHHHcCCCCCEEEE
Confidence 344555566788888876533223443322222 346777665
No 130
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=63.79 E-value=54 Score=26.08 Aligned_cols=28 Identities=14% Similarity=0.122 Sum_probs=16.8
Q ss_pred CHHHHHHHHHHHHHHhhcCCEEEEEEEe
Q 028129 98 SEGTRQAAATTAALAKKYGADITVVVID 125 (213)
Q Consensus 98 S~~s~~Al~~A~~LA~~~~a~L~ll~V~ 125 (213)
++.-...++-..+.+++.|-.+.+....
T Consensus 23 ~~~~~~~~~gi~~~a~~~g~~~~~~~~~ 50 (289)
T 3k9c_A 23 QPFHGDLVEQIYAAATRRGYDVMLSAVA 50 (289)
T ss_dssp CHHHHHHHHHHHHHHHHTTCEEEEEEEB
T ss_pred CchHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 4445555555666667777766665544
No 131
>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}
Probab=63.69 E-value=28 Score=29.49 Aligned_cols=86 Identities=12% Similarity=0.069 Sum_probs=53.7
Q ss_pred CCCcEEEEeeCCCCCCCHHHHHHHHHHHHHHhhcCCEEEEEEEeCCCCCChhhHHHHHHHHHHHHHhCCCCceeEEEEE-
Q 028129 82 NFKHLLLPITDQNPYLSEGTRQAAATTAALAKKYGADITVVVIDERQKESLPEHENRLSSIRWHLSEGGFQEFRLLERL- 160 (213)
Q Consensus 82 ~~k~ILV~vD~~~~~~S~~s~~Al~~A~~LA~~~~a~L~ll~V~~~~~~~~~~~~~~l~~~~~~l~~~g~~~~~v~~~v- 160 (213)
..++|+|-+. ++..+.+++-.+..- ...++++.++....+. . ....++.|++ +...-
T Consensus 104 ~~~ri~vl~S-----g~g~nl~~ll~~~~~-g~l~~~I~~Visn~~~------~-------~~~A~~~gIp---~~~~~~ 161 (302)
T 3o1l_A 104 QKKRVVLMAS-----RESHCLADLLHRWHS-DELDCDIACVISNHQD------L-------RSMVEWHDIP---YYHVPV 161 (302)
T ss_dssp SCCEEEEEEC-----SCCHHHHHHHHHHHT-TCSCSEEEEEEESSST------T-------HHHHHTTTCC---EEECCC
T ss_pred CCcEEEEEEe-----CCchhHHHHHHHHHC-CCCCcEEEEEEECcHH------H-------HHHHHHcCCC---EEEcCC
Confidence 3568888888 666666666665332 2346777776655532 1 1235667888 43211
Q ss_pred cccCCc--hHHHHHHHHHHcCCcEEEEcccCC
Q 028129 161 GEGSSK--PTAIIGDVADELNLDLVIISMEAI 190 (213)
Q Consensus 161 ~~G~~~--p~~~Il~~A~e~~aDLIVmG~~g~ 190 (213)
...+ + -.+++++..+++++|+||+...++
T Consensus 162 ~~~~-r~~~~~~~~~~l~~~~~DliVlagym~ 192 (302)
T 3o1l_A 162 DPKD-KEPAFAEVSRLVGHHQADVVVLARYMQ 192 (302)
T ss_dssp CSSC-CHHHHHHHHHHHHHTTCSEEEESSCCS
T ss_pred CcCC-HHHHHHHHHHHHHHhCCCEEEHhHhhh
Confidence 1111 1 236799999999999999998765
No 132
>3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A*
Probab=63.44 E-value=30 Score=22.99 Aligned_cols=43 Identities=19% Similarity=0.047 Sum_probs=23.1
Q ss_pred HHHHHHHHHcCCcEEEEcccCCCCCCchHHHHHh--cCCCcEEEE
Q 028129 169 AIIGDVADELNLDLVIISMEAIHSKHVDANLLAE--FIPCPVLLL 211 (213)
Q Consensus 169 ~~Il~~A~e~~aDLIVmG~~g~~~~Gs~~~~vl~--~a~cPVLvV 211 (213)
++.++..++.++|+|++...-....|..-...++ ...+|++++
T Consensus 35 ~~a~~~~~~~~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~ii~~ 79 (116)
T 3a10_A 35 EEALKKFFSGNYDLVILDIEMPGISGLEVAGEIRKKKKDAKIILL 79 (116)
T ss_dssp HHHHHHHHHSCCSEEEECSCCSSSCHHHHHHHHHHHCTTCCEEEE
T ss_pred HHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHccCCCCeEEEE
Confidence 4445555667788888876533223443332232 245677654
No 133
>2oq2_A Phosphoadenosine phosphosulfate reductase; sulfate reduction, PAPS reductase, oxidoreductase; HET: A3P; 2.10A {Saccharomyces cerevisiae}
Probab=62.75 E-value=44 Score=27.15 Aligned_cols=44 Identities=16% Similarity=0.157 Sum_probs=32.5
Q ss_pred hhcCCCcEEEEeeCCCCCCCHHHHHHHHHHHHHHhhcCCEEEEEEEeCCC
Q 028129 79 AFTNFKHLLLPITDQNPYLSEGTRQAAATTAALAKKYGADITVVVIDERQ 128 (213)
Q Consensus 79 ~~~~~k~ILV~vD~~~~~~S~~s~~Al~~A~~LA~~~~a~L~ll~V~~~~ 128 (213)
....|.+|+|++. |...+.-.+..+..+... +.++.+++++...
T Consensus 37 a~~~~~~v~va~S-----GGkDS~vLL~ll~~~~~~-~~~i~vv~iDtg~ 80 (261)
T 2oq2_A 37 SIVTFPHLFQTTA-----FGLTGLVTIDMLSKLSEK-YYMPELLFIDTLH 80 (261)
T ss_dssp HHHHCSSEEEECC-----CCHHHHHHHHHHHHHTTT-SCCCEEEEECCSC
T ss_pred HHHHCCCEEEEec-----CCHHHHHHHHHHHHhCcc-CCCeeEEEecCCC
Confidence 3444678999999 889898888887776544 4567788887643
No 134
>3snk_A Response regulator CHEY-like protein; P-loop containing nucleoside triphosphate hydrolases, struct genomics; 2.02A {Mesorhizobium loti}
Probab=62.55 E-value=5.4 Score=28.01 Aligned_cols=15 Identities=13% Similarity=0.295 Sum_probs=8.8
Q ss_pred HHHHcCCcEEEEccc
Q 028129 174 VADELNLDLVIISME 188 (213)
Q Consensus 174 ~A~e~~aDLIVmG~~ 188 (213)
..++.++|+|++...
T Consensus 54 ~l~~~~~dlvi~D~~ 68 (135)
T 3snk_A 54 PPADTRPGIVILDLG 68 (135)
T ss_dssp CCTTCCCSEEEEEEE
T ss_pred HHhccCCCEEEEeCC
Confidence 335556677776654
No 135
>3c97_A Signal transduction histidine kinase; structural genomics, signaling, PSI-2, protein structure initiative; 1.70A {Aspergillus oryzae RIB40}
Probab=62.02 E-value=37 Score=23.57 Aligned_cols=21 Identities=10% Similarity=0.207 Sum_probs=13.1
Q ss_pred HHHHHHHHHcCCcEEEEcccC
Q 028129 169 AIIGDVADELNLDLVIISMEA 189 (213)
Q Consensus 169 ~~Il~~A~e~~aDLIVmG~~g 189 (213)
++.++..++.++|+|++...-
T Consensus 44 ~~al~~l~~~~~dlvllD~~l 64 (140)
T 3c97_A 44 LQALQAYQNRQFDVIIMDIQM 64 (140)
T ss_dssp HHHHHHHHHSCCSEEEECTTC
T ss_pred HHHHHHHhcCCCCEEEEeCCC
Confidence 344455566677888877653
No 136
>2qv0_A Protein MRKE; structural genomics, transcription, PSI-2, protein structure initiative; 2.40A {Klebsiella pneumoniae}
Probab=61.94 E-value=37 Score=23.55 Aligned_cols=21 Identities=5% Similarity=0.121 Sum_probs=12.6
Q ss_pred HHHHHHHHHcCCcEEEEcccC
Q 028129 169 AIIGDVADELNLDLVIISMEA 189 (213)
Q Consensus 169 ~~Il~~A~e~~aDLIVmG~~g 189 (213)
++.++..++..+|+||+...-
T Consensus 45 ~~al~~l~~~~~dlvi~d~~l 65 (143)
T 2qv0_A 45 LDVLKFLQHNKVDAIFLDINI 65 (143)
T ss_dssp HHHHHHHHHCCCSEEEECSSC
T ss_pred HHHHHHHHhCCCCEEEEecCC
Confidence 344455556667777776643
No 137
>1meo_A Phosophoribosylglycinamide formyltransferase; purine biosynthesis; 1.72A {Homo sapiens} SCOP: c.65.1.1 PDB: 1njs_A* 1rbm_A* 1rbq_A* 1rby_A* 1rbz_A* 1rc0_A* 1rc1_A* 1zly_A* 1zlx_A* 1mej_B 1men_A*
Probab=61.89 E-value=57 Score=25.83 Aligned_cols=87 Identities=14% Similarity=0.076 Sum_probs=50.3
Q ss_pred CcEEEEeeCCCCCCCHHHHHHHHHHHHHHhhcCCEEEEEEEeCCCCCChhhHHHHHHHHHHHHHhCCCCceeEEEEEcc-
Q 028129 84 KHLLLPITDQNPYLSEGTRQAAATTAALAKKYGADITVVVIDERQKESLPEHENRLSSIRWHLSEGGFQEFRLLERLGE- 162 (213)
Q Consensus 84 k~ILV~vD~~~~~~S~~s~~Al~~A~~LA~~~~a~L~ll~V~~~~~~~~~~~~~~l~~~~~~l~~~g~~~~~v~~~v~~- 162 (213)
++|.|-+. ++..+.+++-.+.. ....+.++.+|....+.. . ..+...+.|+. +...-..
T Consensus 1 ~riaVl~S-----G~Gs~L~aLi~~~~-~~~~~~~I~~Vvs~~~~~----~-------~~~~A~~~gIp---~~~~~~~~ 60 (209)
T 1meo_A 1 ARVAVLIS-----GTGSNLQALIDSTR-EPNSSAQIDIVISNKAAV----A-------GLDKAERAGIP---TRVINHKL 60 (209)
T ss_dssp CEEEEEES-----SSCTTHHHHHHHHH-STTCSCEEEEEEESSTTC----H-------HHHHHHHTTCC---EEECCGGG
T ss_pred CeEEEEEE-----CCchHHHHHHHHHh-cCCCCcEEEEEEeCCCCh----H-------HHHHHHHcCCC---EEEECccc
Confidence 36777777 56666666654432 122356776665554321 1 12445677888 4321110
Q ss_pred -cC-CchHHHHHHHHHHcCCcEEEEcccCC
Q 028129 163 -GS-SKPTAIIGDVADELNLDLVIISMEAI 190 (213)
Q Consensus 163 -G~-~~p~~~Il~~A~e~~aDLIVmG~~g~ 190 (213)
.+ ..-.+++.+..+++++|+||+...++
T Consensus 61 ~~~r~~~~~~~~~~l~~~~~Dliv~a~y~~ 90 (209)
T 1meo_A 61 YKNRVEFDSAIDLVLEEFSIDIVCLAGFMR 90 (209)
T ss_dssp SSSHHHHHHHHHHHHHHTTCCEEEEESCCS
T ss_pred cCchhhhhHHHHHHHHhcCCCEEEEcchhh
Confidence 10 00136788899999999999988765
No 138
>1p6q_A CHEY2; chemotaxis, signal transduction, response regulator, structural proteomics in europe, spine, structural genomics; NMR {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1p6u_A
Probab=61.50 E-value=27 Score=23.72 Aligned_cols=44 Identities=9% Similarity=-0.025 Sum_probs=27.5
Q ss_pred HHHHHHHHHHcCCcEEEEcccCCCCCCchHHHHHhc----CCCcEEEE
Q 028129 168 TAIIGDVADELNLDLVIISMEAIHSKHVDANLLAEF----IPCPVLLL 211 (213)
Q Consensus 168 ~~~Il~~A~e~~aDLIVmG~~g~~~~Gs~~~~vl~~----a~cPVLvV 211 (213)
.++.++..++..+|+|++...-....|..-..-+++ ..+|++++
T Consensus 40 ~~~a~~~~~~~~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~ 87 (129)
T 1p6q_A 40 GEQGMKIMAQNPHHLVISDFNMPKMDGLGLLQAVRANPATKKAAFIIL 87 (129)
T ss_dssp HHHHHHHHHTSCCSEEEECSSSCSSCHHHHHHHHTTCTTSTTCEEEEC
T ss_pred HHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHhcCccccCCCEEEE
Confidence 345556677788999999876432245544444544 35777764
No 139
>2gwr_A DNA-binding response regulator MTRA; two-component regulatory system, transcription regulation, phosphorylation, OMPR family; 2.10A {Mycobacterium tuberculosis} PDB: 3nhz_A
Probab=61.48 E-value=34 Score=26.53 Aligned_cols=12 Identities=42% Similarity=0.731 Sum_probs=5.8
Q ss_pred HHcCCcEEEEcc
Q 028129 176 DELNLDLVIISM 187 (213)
Q Consensus 176 ~e~~aDLIVmG~ 187 (213)
++..+|+|++..
T Consensus 46 ~~~~~dlvilD~ 57 (238)
T 2gwr_A 46 RELRPDLVLLDL 57 (238)
T ss_dssp HHHCCSEEEEES
T ss_pred HhCCCCEEEEeC
Confidence 334455555544
No 140
>3eq2_A Probable two-component response regulator; adaptor sigmas, signaling protein; 3.40A {Pseudomonas aeruginosa} PDB: 3f7a_A
Probab=61.15 E-value=39 Score=28.68 Aligned_cols=77 Identities=17% Similarity=0.189 Sum_probs=43.6
Q ss_pred EEEEEEEeCCCCCChhhHHHHHHHHHHHHHhCCCCceeEEEEEcccCCchHHHHHHHHHHcCCcEEEEcccCCCCCCchH
Q 028129 118 DITVVVIDERQKESLPEHENRLSSIRWHLSEGGFQEFRLLERLGEGSSKPTAIIGDVADELNLDLVIISMEAIHSKHVDA 197 (213)
Q Consensus 118 ~L~ll~V~~~~~~~~~~~~~~l~~~~~~l~~~g~~~~~v~~~v~~G~~~p~~~Il~~A~e~~aDLIVmG~~g~~~~Gs~~ 197 (213)
...++.|++.. ...+.+...+...|+. +. .. . +. ++.++..++..+|+|++-..-...+|...
T Consensus 5 ~~~iLivdD~~--------~~~~~l~~~L~~~g~~---v~-~a--~--~~-~~al~~~~~~~~dlvllD~~mp~~~G~~~ 67 (394)
T 3eq2_A 5 SATLLIIDDDE--------VVRESLAAYLEDSNFK---VL-QA--L--NG-LQGLQIFESEQPDLVICDLRMPQIDGLEL 67 (394)
T ss_dssp EEEEEEECSCH--------HHHHHHHHHHHHTTEE---EE-EC--S--SH-HHHHHHHHHSCCSEEEECCCSSSSCTHHH
T ss_pred CCEEEEEeCCH--------HHHHHHHHHHHhCCCE---EE-EE--C--CH-HHHHHHHhhCCCCEEEEcCCCCCCCHHHH
Confidence 46677776632 2233344455555654 53 22 1 23 34456667788999999775432356655
Q ss_pred HHHHh--cCCCcEEEE
Q 028129 198 NLLAE--FIPCPVLLL 211 (213)
Q Consensus 198 ~~vl~--~a~cPVLvV 211 (213)
..-++ ...+||+++
T Consensus 68 ~~~lr~~~~~~pii~l 83 (394)
T 3eq2_A 68 IRRIRQTASETPIIVL 83 (394)
T ss_dssp HHHHHHTTCCCCEEEC
T ss_pred HHHHHhhCCCCcEEEE
Confidence 44443 346888775
No 141
>1t9k_A Probable methylthioribose-1-phosphate isomerase; structural genomics, translation initiation factor, AIF-2B subunit, PSI; 2.60A {Thermotoga maritima} SCOP: c.124.1.5
Probab=61.11 E-value=11 Score=32.66 Aligned_cols=84 Identities=18% Similarity=0.219 Sum_probs=47.6
Q ss_pred HhhcCCEEEEEEEeCCCCCChhhHHHHHHHHHHHHHhCCCCceeEEEEEcccCCchHHHHHHHHHHcCCcEEEEcccCCC
Q 028129 112 AKKYGADITVVVIDERQKESLPEHENRLSSIRWHLSEGGFQEFRLLERLGEGSSKPTAIIGDVADELNLDLVIISMEAIH 191 (213)
Q Consensus 112 A~~~~a~L~ll~V~~~~~~~~~~~~~~l~~~~~~l~~~g~~~~~v~~~v~~G~~~p~~~Il~~A~e~~aDLIVmG~~g~~ 191 (213)
|.+.|.++++++.+..+. .+. .....|.+.+.|++ +.... - .++.-+-++.++|.||+|+..-.
T Consensus 176 A~~~gk~~~V~v~EtRP~-----~qG-~rlta~eL~~~GI~---vtlI~--D-----sa~~~~M~~~~Vd~VivGAd~V~ 239 (347)
T 1t9k_A 176 AVESGKRIRVFADETRPY-----LQG-ARLTAWELMKDGIE---VYVIT--D-----NMAGWLMKRGLIDAVVVGADRIA 239 (347)
T ss_dssp HHHTTCCEEEEEECCTTT-----THH-HHTHHHHHHTTTCE---EEEEC--G-----GGHHHHHHTTCCSEEEECCSEEE
T ss_pred HHHCCCeEEEEEeCCCCc-----ccc-HHHHHHHHHhCCCC---EEEEe--h-----hHHHHHhhcCCCCEEEECccEEe
Confidence 344455666655543321 111 01235678888988 55322 1 23333444567999999997532
Q ss_pred CC-------CchHH-HHHhcCCCcEEEE
Q 028129 192 SK-------HVDAN-LLAEFIPCPVLLL 211 (213)
Q Consensus 192 ~~-------Gs~~~-~vl~~a~cPVLvV 211 (213)
.+ |.-.. .++++-.+|++++
T Consensus 240 aNG~v~NKiGT~~lAl~Ak~~~vPfyV~ 267 (347)
T 1t9k_A 240 LNGDTANKIGTYSLAVLAKRNNIPFYVA 267 (347)
T ss_dssp TTSCEEEETTHHHHHHHHHHTTCCEEEE
T ss_pred cCCCEEecccHHHHHHHHHHcCCCEEEe
Confidence 22 33332 3488999999986
No 142
>1dz3_A Stage 0 sporulation protein A; response regulator, domain swapping; 1.65A {Bacillus stearothermophilus} SCOP: c.23.1.1 PDB: 1qmp_A*
Probab=59.82 E-value=38 Score=23.06 Aligned_cols=21 Identities=10% Similarity=0.137 Sum_probs=12.3
Q ss_pred HHHHHHHHHcCCcEEEEcccC
Q 028129 169 AIIGDVADELNLDLVIISMEA 189 (213)
Q Consensus 169 ~~Il~~A~e~~aDLIVmG~~g 189 (213)
++.++..++..+|+|++...-
T Consensus 38 ~~a~~~~~~~~~dlvllD~~l 58 (130)
T 1dz3_A 38 QDCLQMLEEKRPDILLLDIIM 58 (130)
T ss_dssp HHHHHHHHHHCCSEEEEESCC
T ss_pred HHHHHHHhcCCCCEEEEecCC
Confidence 344444555667777776643
No 143
>3av3_A Phosphoribosylglycinamide formyltransferase; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; HET: MSE; 1.70A {Geobacillus kaustophilus}
Probab=59.60 E-value=60 Score=25.68 Aligned_cols=87 Identities=11% Similarity=0.013 Sum_probs=47.5
Q ss_pred CCcEEEEeeCCCCCCCHHHHHHHHHHHHHHhh-cCCEEEEEEEeCCCCCChhhHHHHHHHHHHHHHhCCCCceeEEEEEc
Q 028129 83 FKHLLLPITDQNPYLSEGTRQAAATTAALAKK-YGADITVVVIDERQKESLPEHENRLSSIRWHLSEGGFQEFRLLERLG 161 (213)
Q Consensus 83 ~k~ILV~vD~~~~~~S~~s~~Al~~A~~LA~~-~~a~L~ll~V~~~~~~~~~~~~~~l~~~~~~l~~~g~~~~~v~~~v~ 161 (213)
+++|.|-+. |+.....++-.+ +... .+.++.+|....+.. .+.+..++.|+. +...-.
T Consensus 3 m~ki~vl~s-----G~g~~~~~~l~~--l~~~~l~~~I~~Vit~~~~~-----------~v~~~A~~~gIp---~~~~~~ 61 (212)
T 3av3_A 3 MKRLAVFAS-----GSGTNFQAIVDA--AKRGDLPARVALLVCDRPGA-----------KVIERAARENVP---AFVFSP 61 (212)
T ss_dssp CEEEEEECC-----SSCHHHHHHHHH--HHTTCCCEEEEEEEESSTTC-----------HHHHHHHHTTCC---EEECCG
T ss_pred CcEEEEEEE-----CCcHHHHHHHHH--HHhCCCCCeEEEEEeCCCCc-----------HHHHHHHHcCCC---EEEeCc
Confidence 357777777 555443333332 2222 245665554433221 233456677888 432111
Q ss_pred ccCCch---HHHHHHHHHHcCCcEEEEcccCC
Q 028129 162 EGSSKP---TAIIGDVADELNLDLVIISMEAI 190 (213)
Q Consensus 162 ~G~~~p---~~~Il~~A~e~~aDLIVmG~~g~ 190 (213)
..-.+. .+++++..+++++|+||+...++
T Consensus 62 ~~~~~~~~~~~~~~~~l~~~~~Dliv~a~y~~ 93 (212)
T 3av3_A 62 KDYPSKAAFESEILRELKGRQIDWIALAGYMR 93 (212)
T ss_dssp GGSSSHHHHHHHHHHHHHHTTCCEEEESSCCS
T ss_pred ccccchhhhHHHHHHHHHhcCCCEEEEchhhh
Confidence 110011 35788999999999999988765
No 144
>1kor_A Argininosuccinate synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: ANP ARG; 1.95A {Thermus thermophilus} SCOP: c.26.2.1 d.210.1.1 PDB: 1j1z_A* 1j21_A* 1kh1_A 1kh2_A* 1kh3_A* 1j20_A*
Probab=59.45 E-value=43 Score=29.34 Aligned_cols=91 Identities=14% Similarity=0.103 Sum_probs=53.7
Q ss_pred CcEEEEeeCCCCCCCHHHHHHHHHHHHHHhhcCCEEEEEEEeCCCCCChhhHHHHHHHHHHHHHhCCCCceeEEE-E---
Q 028129 84 KHLLLPITDQNPYLSEGTRQAAATTAALAKKYGADITVVVIDERQKESLPEHENRLSSIRWHLSEGGFQEFRLLE-R--- 159 (213)
Q Consensus 84 k~ILV~vD~~~~~~S~~s~~Al~~A~~LA~~~~a~L~ll~V~~~~~~~~~~~~~~l~~~~~~l~~~g~~~~~v~~-~--- 159 (213)
++|++++. |...|.-++.++. +.++.++..++++...... ++.+++.....|+..+.+.. .
T Consensus 1 ~kVvva~S-----GG~DSsvll~ll~---~~~g~~V~av~vd~g~~~e-------~e~a~~~A~~lGi~~~~vvd~~~ef 65 (400)
T 1kor_A 1 MKIVLAYS-----GGLDTSIILKWLK---ETYRAEVIAFTADIGQGEE-------VEEAREKALRTGASKAIALDLKEEF 65 (400)
T ss_dssp CEEEEECC-----SSHHHHHHHHHHH---HHHTCEEEEEEEESSCSSC-------HHHHHHHHHHHTCSEEEEEECHHHH
T ss_pred CcEEEEEe-----ChHHHHHHHHHHH---HhhCCcEEEEEEeCCCHHH-------HHHHHHHHHHhCCCeEEEEeCcHHH
Confidence 46888888 7777777776653 3347788888888654211 22222233333553222110 0
Q ss_pred ------------------EcccCCc-----hHHHHHHHHHHcCCcEEEEcccCC
Q 028129 160 ------------------LGEGSSK-----PTAIIGDVADELNLDLVIISMEAI 190 (213)
Q Consensus 160 ------------------v~~G~~~-----p~~~Il~~A~e~~aDLIVmG~~g~ 190 (213)
...|. . ....+.++|+++++|.|+.|+++.
T Consensus 66 ~~~~~~~~i~~~~~~e~~y~~g~-~~~R~~~~~~L~~~A~~~G~~~IatG~~~d 118 (400)
T 1kor_A 66 VRDFVFPMMRAGAVYEGYYLLGT-SIARPLIAKHLVRIAEEEGAEAIAHGATGK 118 (400)
T ss_dssp HHHTHHHHHHTTCCBTTTBCCTT-TTHHHHHHHHHHHHHHHHTCSEEECCCCTT
T ss_pred HHHhhHHHHHcCCccccccccCC-ccchHHHHHHHHHHHHHcCCCEEEECCCCC
Confidence 00111 0 145788899999999999999864
No 145
>2qv7_A Diacylglycerol kinase DGKB; alpha-beta domain 1, beta sandwich domain 2, protein-ADP COM transferase; HET: ADP; 2.30A {Staphylococcus aureus} SCOP: e.52.1.2 PDB: 2qvl_A
Probab=59.42 E-value=27 Score=29.38 Aligned_cols=37 Identities=11% Similarity=0.024 Sum_probs=19.1
Q ss_pred CCcEEEEeeCCCCCCCHHHHHHHHHHHHHHhhcCCEEEE
Q 028129 83 FKHLLLPITDQNPYLSEGTRQAAATTAALAKKYGADITV 121 (213)
Q Consensus 83 ~k~ILV~vD~~~~~~S~~s~~Al~~A~~LA~~~~a~L~l 121 (213)
+++++|-+++.+ +.....+.++......+..+.++.+
T Consensus 24 m~~i~vI~NP~s--g~~~~~~~~~~i~~~L~~~g~~~~~ 60 (337)
T 2qv7_A 24 RKRARIIYNPTS--GKEQFKRELPDALIKLEKAGYETSA 60 (337)
T ss_dssp CEEEEEEECTTS--TTSCHHHHHHHHHHHHHHTTEEEEE
T ss_pred cceEEEEECCCC--CCCchHHHHHHHHHHHHHcCCeEEE
Confidence 577888888521 1112334445555555555544443
No 146
>3b2n_A Uncharacterized protein Q99UF4; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.04A {Staphylococcus aureus}
Probab=58.64 E-value=41 Score=23.09 Aligned_cols=42 Identities=14% Similarity=0.182 Sum_probs=21.0
Q ss_pred HHHHHHHHcCCcEEEEcccCCCCCCchHHHHHh--cCCCcEEEE
Q 028129 170 IIGDVADELNLDLVIISMEAIHSKHVDANLLAE--FIPCPVLLL 211 (213)
Q Consensus 170 ~Il~~A~e~~aDLIVmG~~g~~~~Gs~~~~vl~--~a~cPVLvV 211 (213)
+.++..++.++|+|++...-....|.....-++ ...+||+++
T Consensus 40 ~al~~~~~~~~dlvilD~~lp~~~g~~~~~~l~~~~~~~~ii~l 83 (133)
T 3b2n_A 40 DAMKLIEEYNPNVVILDIEMPGMTGLEVLAEIRKKHLNIKVIIV 83 (133)
T ss_dssp HHHHHHHHHCCSEEEECSSCSSSCHHHHHHHHHHTTCSCEEEEE
T ss_pred HHHHHHhhcCCCEEEEecCCCCCCHHHHHHHHHHHCCCCcEEEE
Confidence 344555556677777766533223443332233 234666654
No 147
>1t5o_A EIF2BD, translation initiation factor EIF2B, subunit DELT; subunit delta, structural GEN PSI, protein structure initiative; 1.90A {Archaeoglobus fulgidus} SCOP: c.124.1.5
Probab=58.46 E-value=11 Score=32.78 Aligned_cols=84 Identities=20% Similarity=0.314 Sum_probs=47.7
Q ss_pred HhhcCCEEEEEEEeCCCCCChhhHHHHHHHHHHHHHhCCCCceeEEEEEcccCCchHHHHHHHHHHcCCcEEEEcccCCC
Q 028129 112 AKKYGADITVVVIDERQKESLPEHENRLSSIRWHLSEGGFQEFRLLERLGEGSSKPTAIIGDVADELNLDLVIISMEAIH 191 (213)
Q Consensus 112 A~~~~a~L~ll~V~~~~~~~~~~~~~~l~~~~~~l~~~g~~~~~v~~~v~~G~~~p~~~Il~~A~e~~aDLIVmG~~g~~ 191 (213)
|.+.|.++++++.+..+. .+. .....|.+.+.|++ +.... -.++.-+-++.++|.||+|+..-.
T Consensus 174 A~~~gk~~~V~v~EtRP~-----~qG-~rlta~eL~~~GI~---vtlI~-------Dsa~~~~M~~~~Vd~VivGAd~V~ 237 (351)
T 1t5o_A 174 AVEQGKEIRVIACETRPL-----NQG-SRLTCWELMEDGID---VTLIT-------DSMVGIVMQKGMVDKVIVGADRIV 237 (351)
T ss_dssp HHHTTCCCEEEEECCTTT-----THH-HHTHHHHHHHTTCC---EEEEC-------GGGHHHHHHTTCCSEEEECCSEEE
T ss_pred HHHCCCEEEEEEeCCCcc-----ccc-HHHHHHHHHhCCCC---EEEEe-------hhHHHHHhhcCCCCEEEECccchh
Confidence 344455666655443321 111 11234678888998 65322 123333444567999999997643
Q ss_pred CCC------chH-HHHHhcCCCcEEEE
Q 028129 192 SKH------VDA-NLLAEFIPCPVLLL 211 (213)
Q Consensus 192 ~~G------s~~-~~vl~~a~cPVLvV 211 (213)
.+| .-. ..++++-.+|++|+
T Consensus 238 aNGv~NKiGT~~lAl~Ak~~~vPfyV~ 264 (351)
T 1t5o_A 238 RDAVFNKIGTYTVSVVAKHHNIPFYVA 264 (351)
T ss_dssp TTEEEEETTHHHHHHHHHHTTCCEEEE
T ss_pred hcCcccccCHHHHHHHHHHcCCCEEEe
Confidence 344 222 23488899999986
No 148
>2hma_A Probable tRNA (5-methylaminomethyl-2-thiouridylat methyltransferase; alpha-beta, beta barrel, structural genomics, PSI-2; HET: MSE SAM; 2.41A {Streptococcus pneumoniae}
Probab=57.96 E-value=67 Score=27.73 Aligned_cols=97 Identities=13% Similarity=0.104 Sum_probs=55.3
Q ss_pred CCcEEEEeeCCCCCCCHHHHHHHHHHHHHHhhcCCEEEEEEEeCCCCCC---hhhHHHHHHHHHHHHHhCCCCceeEEEE
Q 028129 83 FKHLLLPITDQNPYLSEGTRQAAATTAALAKKYGADITVVVIDERQKES---LPEHENRLSSIRWHLSEGGFQEFRLLER 159 (213)
Q Consensus 83 ~k~ILV~vD~~~~~~S~~s~~Al~~A~~LA~~~~a~L~ll~V~~~~~~~---~~~~~~~l~~~~~~l~~~g~~~~~v~~~ 159 (213)
.++|+|++. |...|.-++... ++.|-++..+++....... .-......+.+++..+..|++-+-+...
T Consensus 9 ~~kVlVa~S-----GGvDSsv~a~lL----~~~G~~V~~v~~~~~~~~~~~~~c~~~~d~~~a~~va~~lGIp~~vv~~~ 79 (376)
T 2hma_A 9 KTRVVVGMS-----GGVDSSVTALLL----KEQGYDVIGIFMKNWDDTDENGVCTATEDYKDVVAVADQIGIPYYSVNFE 79 (376)
T ss_dssp GSEEEEECC-----SSHHHHHHHHHH----HHTTCEEEEEEEECCCCCC----CHHHHHHHHHHHHHHHHTCCEEEEECH
T ss_pred CCeEEEEEe-----CHHHHHHHHHHH----HHcCCcEEEEEEECCCcccccccCCCHHHHHHHHHHHHHhCCcEEEEeCh
Confidence 458999999 777777655544 3447788888887543211 1011223444444455557662111100
Q ss_pred --------------EcccCCch-----------HHHHHHHHHHcCCcEEEEcccC
Q 028129 160 --------------LGEGSSKP-----------TAIIGDVADELNLDLVIISMEA 189 (213)
Q Consensus 160 --------------v~~G~~~p-----------~~~Il~~A~e~~aDLIVmG~~g 189 (213)
...|. .| ...+.++|+++++|.|+.|++.
T Consensus 80 ~~~~~~v~~~~l~~y~~G~-tpnpc~~C~r~ik~~~l~~~A~~~G~d~IatGH~a 133 (376)
T 2hma_A 80 KEYWDRVFEYFLAEYRAGR-TPNPDVMCNKEIKFKAFLDYAITLGADYVATGHYA 133 (376)
T ss_dssp HHHHHHTHHHHHHHHHTTC-CCCHHHHHHHHTTTTHHHHHHHTTTCSEEECCCSE
T ss_pred HHHHHHHHHHHHHHHhcCC-CCChHHHHHHHHHHHHHHHHHHhCCCCEEEECcch
Confidence 00121 11 2456788999999999999853
No 149
>3auf_A Glycinamide ribonucleotide transformylase 1; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; 2.07A {Symbiobacterium toebii}
Probab=57.83 E-value=72 Score=25.61 Aligned_cols=87 Identities=16% Similarity=0.060 Sum_probs=47.3
Q ss_pred CCcEEEEeeCCCCCCCHHHHHHHHHHHHHHhh-cCCEEEEEEEeCCCCCChhhHHHHHHHHHHHHHhCCCCceeEEEEEc
Q 028129 83 FKHLLLPITDQNPYLSEGTRQAAATTAALAKK-YGADITVVVIDERQKESLPEHENRLSSIRWHLSEGGFQEFRLLERLG 161 (213)
Q Consensus 83 ~k~ILV~vD~~~~~~S~~s~~Al~~A~~LA~~-~~a~L~ll~V~~~~~~~~~~~~~~l~~~~~~l~~~g~~~~~v~~~v~ 161 (213)
+.+|+|-+. |+.....++-.+ +... .+.++.+|....+.. ...+..++.|+. +...-.
T Consensus 22 ~~rI~~l~S-----G~g~~~~~~l~~--l~~~~~~~~I~~Vvt~~~~~-----------~~~~~A~~~gIp---~~~~~~ 80 (229)
T 3auf_A 22 MIRIGVLIS-----GSGTNLQAILDG--CREGRIPGRVAVVISDRADA-----------YGLERARRAGVD---ALHMDP 80 (229)
T ss_dssp CEEEEEEES-----SCCHHHHHHHHH--HHTTSSSEEEEEEEESSTTC-----------HHHHHHHHTTCE---EEECCG
T ss_pred CcEEEEEEe-----CCcHHHHHHHHH--HHhCCCCCeEEEEEcCCCch-----------HHHHHHHHcCCC---EEEECc
Confidence 357888887 554433333222 2222 245565554443221 123455677887 432111
Q ss_pred cc-CC--chHHHHHHHHHHcCCcEEEEcccCC
Q 028129 162 EG-SS--KPTAIIGDVADELNLDLVIISMEAI 190 (213)
Q Consensus 162 ~G-~~--~p~~~Il~~A~e~~aDLIVmG~~g~ 190 (213)
.. .+ .-.+++++..+++++|+||+...++
T Consensus 81 ~~~~~r~~~~~~~~~~l~~~~~Dliv~agy~~ 112 (229)
T 3auf_A 81 AAYPSRTAFDAALAERLQAYGVDLVCLAGYMR 112 (229)
T ss_dssp GGSSSHHHHHHHHHHHHHHTTCSEEEESSCCS
T ss_pred ccccchhhccHHHHHHHHhcCCCEEEEcChhH
Confidence 11 00 0136788999999999999988765
No 150
>4ds3_A Phosphoribosylglycinamide formyltransferase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.85A {Brucella melitensis BV}
Probab=57.80 E-value=37 Score=27.07 Aligned_cols=87 Identities=15% Similarity=0.101 Sum_probs=52.0
Q ss_pred CcEEEEeeCCCCCCCHHHHHHHHHHHHHHhhcCCEEEEEEEeCCCCCChhhHHHHHHHHHHHHHhCCCCceeEEEEEcc-
Q 028129 84 KHLLLPITDQNPYLSEGTRQAAATTAALAKKYGADITVVVIDERQKESLPEHENRLSSIRWHLSEGGFQEFRLLERLGE- 162 (213)
Q Consensus 84 k~ILV~vD~~~~~~S~~s~~Al~~A~~LA~~~~a~L~ll~V~~~~~~~~~~~~~~l~~~~~~l~~~g~~~~~v~~~v~~- 162 (213)
++|.|-+. |+....+++-.+..- ...++++.+|..+.+... . .+..++.|+. +...-..
T Consensus 8 ~ri~vl~S-----G~gsnl~all~~~~~-~~l~~~I~~Visn~~~a~------~-----l~~A~~~gIp---~~~~~~~~ 67 (209)
T 4ds3_A 8 NRVVIFIS-----GGGSNMEALIRAAQA-PGFPAEIVAVFSDKAEAG------G-----LAKAEAAGIA---TQVFKRKD 67 (209)
T ss_dssp EEEEEEES-----SCCHHHHHHHHHHTS-TTCSEEEEEEEESCTTCT------H-----HHHHHHTTCC---EEECCGGG
T ss_pred ccEEEEEE-----CCcHHHHHHHHHHHc-CCCCcEEEEEEECCcccH------H-----HHHHHHcCCC---EEEeCccc
Confidence 47888888 777776666665421 223456666555433211 1 2345677888 4321111
Q ss_pred -cC-CchHHHHHHHHHHcCCcEEEEcccCC
Q 028129 163 -GS-SKPTAIIGDVADELNLDLVIISMEAI 190 (213)
Q Consensus 163 -G~-~~p~~~Il~~A~e~~aDLIVmG~~g~ 190 (213)
.+ ..-.+++++..+++++|+||+...++
T Consensus 68 ~~~r~~~d~~~~~~l~~~~~Dliv~agy~~ 97 (209)
T 4ds3_A 68 FASKEAHEDAILAALDVLKPDIICLAGYMR 97 (209)
T ss_dssp SSSHHHHHHHHHHHHHHHCCSEEEESSCCS
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEecccc
Confidence 11 00136899999999999999988765
No 151
>1a04_A Nitrate/nitrite response regulator protein NARL; signal transduction protein, response regulators, two- component systems; 2.20A {Escherichia coli} SCOP: a.4.6.2 c.23.1.1 PDB: 1rnl_A
Probab=57.69 E-value=58 Score=24.51 Aligned_cols=42 Identities=10% Similarity=0.145 Sum_probs=21.7
Q ss_pred HHHHHHHHcCCcEEEEcccCCCCCCchHHHHHhc--CCCcEEEE
Q 028129 170 IIGDVADELNLDLVIISMEAIHSKHVDANLLAEF--IPCPVLLL 211 (213)
Q Consensus 170 ~Il~~A~e~~aDLIVmG~~g~~~~Gs~~~~vl~~--a~cPVLvV 211 (213)
+.++..++..+|+|++...-....|.....-+++ ..+||+++
T Consensus 42 ~al~~~~~~~~dlvllD~~lp~~~g~~~~~~lr~~~~~~~ii~l 85 (215)
T 1a04_A 42 QGIELAESLDPDLILLDLNMPGMNGLETLDKLREKSLSGRIVVF 85 (215)
T ss_dssp HHHHHHHHHCCSEEEEETTSTTSCHHHHHHHHHHSCCCSEEEEE
T ss_pred HHHHHHHhcCCCEEEEeCCCCCCcHHHHHHHHHHhCCCCcEEEE
Confidence 3445555667788887665332234443333332 34666654
No 152
>1k92_A Argininosuccinate synthase, argininosuccinate SY; N-type ATP pyrophosphatase, ligase; 1.60A {Escherichia coli} SCOP: c.26.2.1 d.210.1.1 PDB: 1k97_A* 1kp2_A* 1kp3_A*
Probab=57.56 E-value=57 Score=29.21 Aligned_cols=96 Identities=13% Similarity=0.046 Sum_probs=56.7
Q ss_pred hcCCCcEEEEeeCCCCCCCHHHHHHHHHHHHHHhhcCCEEEEEEEeCCCCCChhhHHHHHHHHHHHHHhCCCCceeEEEE
Q 028129 80 FTNFKHLLLPITDQNPYLSEGTRQAAATTAALAKKYGADITVVVIDERQKESLPEHENRLSSIRWHLSEGGFQEFRLLER 159 (213)
Q Consensus 80 ~~~~k~ILV~vD~~~~~~S~~s~~Al~~A~~LA~~~~a~L~ll~V~~~~~~~~~~~~~~l~~~~~~l~~~g~~~~~v~~~ 159 (213)
+...++|+|++. |.-.+.-++.++.+ .|.+++.++++...... .+ ++.+++...+.|+..+.+...
T Consensus 7 l~~~~KVvVA~S-----GGlDSSvll~~L~e----~G~eViavtvd~Gq~~~-~e----le~a~~~A~~lGi~~~~vvD~ 72 (455)
T 1k92_A 7 LPVGQRIGIAFS-----GGLDTSAALLWMRQ----KGAVPYAYTANLGQPDE-ED----YDAIPRRAMEYGAENARLIDC 72 (455)
T ss_dssp CCTTSEEEEECC-----SSHHHHHHHHHHHH----TTCEEEEEEEECCCTTC-SC----TTHHHHHHHHHTCSEEEEEEC
T ss_pred hcCCCeEEEEEc-----ChHHHHHHHHHHHH----cCCEEEEEEEEcCCCCH-HH----HHHHHHHHHHhCCCeEEEEeC
Confidence 344678999999 88888877776643 37899999887654211 00 122222233334421111100
Q ss_pred -----------E-----c--cc-------CCc-----hHHHHHHHHHHcCCcEEEEcccCC
Q 028129 160 -----------L-----G--EG-------SSK-----PTAIIGDVADELNLDLVIISMEAI 190 (213)
Q Consensus 160 -----------v-----~--~G-------~~~-----p~~~Il~~A~e~~aDLIVmG~~g~ 190 (213)
+ . +| . . ....+.++|++.++|.|..|+.++
T Consensus 73 ~eef~~~v~p~i~~na~y~~eg~rcY~l~t-~~aRp~i~~~l~e~A~e~Gad~IAtGht~k 132 (455)
T 1k92_A 73 RKQLVAEGIAAIQCGAFHNTTGGLTYFNTT-PLGRAVTGTMLVAAMKEDGVNIWGDGSTYK 132 (455)
T ss_dssp HHHHHHHHHHHHHHTCCCCEETTEECCCHH-HHHHHHHHHHHHHHHHHTTCCEEECCCCTT
T ss_pred hHHHHHHhHHHHHcCCcccccCceecccCC-cchHHHHHHHHHHHHHHcCCCEEEECCcCC
Confidence 0 0 11 1 0 146788999999999999999764
No 153
>2yvk_A Methylthioribose-1-phosphate isomerase; methionine salvage pathway,; HET: MRU; 2.40A {Bacillus subtilis} PDB: 2yrf_A*
Probab=57.04 E-value=10 Score=33.29 Aligned_cols=60 Identities=18% Similarity=0.344 Sum_probs=37.9
Q ss_pred HHHHHHhCCCCceeEEEEEcccCCchHHHHHHHHHHcCCcEEEEcccCCCCC-------CchHH-HHHhcCCCcEEEE
Q 028129 142 IRWHLSEGGFQEFRLLERLGEGSSKPTAIIGDVADELNLDLVIISMEAIHSK-------HVDAN-LLAEFIPCPVLLL 211 (213)
Q Consensus 142 ~~~~l~~~g~~~~~v~~~v~~G~~~p~~~Il~~A~e~~aDLIVmG~~g~~~~-------Gs~~~-~vl~~a~cPVLvV 211 (213)
..|.+.+.|++ +.... - .++.-+-++.++|.||+|+..-..+ |.-.. .++++-.+||+|+
T Consensus 225 tA~eL~~~GIp---vtlI~--D-----sa~~~~M~~~~Vd~ViVGAD~V~aNG~v~NKiGTy~lAl~Ak~~~vPfyV~ 292 (374)
T 2yvk_A 225 TAWELMQGGID---VTLIT--D-----SMAAHTMKEKQISAVIVGADRIAKNGDTANKIGTYGLAILANAFDIPFFVA 292 (374)
T ss_dssp HHHHHHTTTCE---EEEEC--G-----GGHHHHHHHTTCCEEEECCSEEETTCCEEEETTHHHHHHHHHHTTCCEEEE
T ss_pred HHHHHHHcCCC---EEEEe--h-----hHHHHHhhhcCCCEEEECccEEecCCCEEecccHHHHHHHHHHcCCCEEEe
Confidence 34678888988 55322 1 2333344456799999999753222 33332 3488999999986
No 154
>3n0r_A Response regulator; sigma factor, receiver, two-component SI transduction, signaling protein; HET: MSE GOL; 1.25A {Caulobacter vibrioides} PDB: 3t0y_A
Probab=56.65 E-value=80 Score=25.74 Aligned_cols=76 Identities=16% Similarity=0.200 Sum_probs=43.7
Q ss_pred EEEEEEeCCCCCChhhHHHHHHHHHHHHHhCCCCceeEEEEEcccCCchHHHHHHHHHHcCCcEEEEcccCC-CCCCchH
Q 028129 119 ITVVVIDERQKESLPEHENRLSSIRWHLSEGGFQEFRLLERLGEGSSKPTAIIGDVADELNLDLVIISMEAI-HSKHVDA 197 (213)
Q Consensus 119 L~ll~V~~~~~~~~~~~~~~l~~~~~~l~~~g~~~~~v~~~v~~G~~~p~~~Il~~A~e~~aDLIVmG~~g~-~~~Gs~~ 197 (213)
..++.+++.. ...+.+...+...|+. +...... . .+-++..++..+|||+|--.-. .-+|...
T Consensus 161 ~rILvVdD~~--------~~~~~l~~~L~~~g~~---v~~~a~~----g-~eAl~~~~~~~~dlvl~D~~MPd~mdG~e~ 224 (286)
T 3n0r_A 161 TEVLIIEDEP--------VIAADIEALVRELGHD---VTDIAAT----R-GEALEAVTRRTPGLVLADIQLADGSSGIDA 224 (286)
T ss_dssp CEEEEECCSH--------HHHHHHHHHHHHTTCE---EEEEESS----H-HHHHHHHHHCCCSEEEEESCCTTSCCTTTT
T ss_pred CcEEEEcCCH--------HHHHHHHHHhhccCce---EEEEeCC----H-HHHHHHHHhCCCCEEEEcCCCCCCCCHHHH
Confidence 3566666532 2334445566777877 6533433 3 3555666778999999976532 1255543
Q ss_pred HHH--HhcCCCcEEEE
Q 028129 198 NLL--AEFIPCPVLLL 211 (213)
Q Consensus 198 ~~v--l~~a~cPVLvV 211 (213)
... -.. .+||+++
T Consensus 225 ~~~ir~~~-~~piI~l 239 (286)
T 3n0r_A 225 VKDILGRM-DVPVIFI 239 (286)
T ss_dssp THHHHHHT-TCCEEEE
T ss_pred HHHHHhcC-CCCEEEE
Confidence 332 223 8999876
No 155
>1iv0_A Hypothetical protein; rnaseh-like, YQGF, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Thermus thermophilus} SCOP: c.55.3.8
Probab=56.48 E-value=25 Score=24.51 Aligned_cols=23 Identities=9% Similarity=0.196 Sum_probs=20.1
Q ss_pred chHHHHHHHHHHcCCcEEEEccc
Q 028129 166 KPTAIIGDVADELNLDLVIISME 188 (213)
Q Consensus 166 ~p~~~Il~~A~e~~aDLIVmG~~ 188 (213)
...+.|.+++++++++.||+|-.
T Consensus 38 ~~~~~l~~li~e~~v~~iVvGlP 60 (98)
T 1iv0_A 38 EDVEALLDFVRREGLGKLVVGLP 60 (98)
T ss_dssp HHHHHHHHHHHHHTCCEEEEECC
T ss_pred HHHHHHHHHHHHcCCCEEEEeec
Confidence 35689999999999999999964
No 156
>1vbk_A Hypothetical protein PH1313; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 1.90A {Pyrococcus horikoshii} SCOP: c.26.2.6 d.308.1.1
Probab=56.26 E-value=88 Score=26.13 Aligned_cols=82 Identities=13% Similarity=0.075 Sum_probs=50.0
Q ss_pred CCcEEEEeeCCCCCCCHHHHHHHHHHHHHHhhcCCEEEEEEEeCCCCCChhhHHHHHHHHHHHHHh----CCCCceeEEE
Q 028129 83 FKHLLLPITDQNPYLSEGTRQAAATTAALAKKYGADITVVVIDERQKESLPEHENRLSSIRWHLSE----GGFQEFRLLE 158 (213)
Q Consensus 83 ~k~ILV~vD~~~~~~S~~s~~Al~~A~~LA~~~~a~L~ll~V~~~~~~~~~~~~~~l~~~~~~l~~----~g~~~~~v~~ 158 (213)
-.++++.+. | -.|.- +.+++.+.|.+++.+++.. . +...+...++.+.+.. .+++ ..
T Consensus 179 ~~kvlvllS-----G-vDS~v----aa~ll~~~G~~v~~v~~~~-~----~~~~~~a~~~a~~l~~~~~~~~i~---~~- 239 (307)
T 1vbk_A 179 EGRMIGILH-----D-ELSAL----AIFLMMKRGVEVIPVYIGK-D----DKNLEKVRSLWNLLKRYSYGSKGF---LV- 239 (307)
T ss_dssp TCEEEEECS-----S-HHHHH----HHHHHHHBTCEEEEEEESC-S----SHHHHHHHHHHHHHHTTCTTSCCC---CE-
T ss_pred CCcEEEEEe-----C-CcHHH----HHHHHHhCCCeEEEEEEEE-C----HHHHHHHHHHHHHHhhhccCCCCc---EE-
Confidence 358899988 7 66643 3445566789999998872 1 1122222333334432 2333 22
Q ss_pred EEcccCCch-HHHHHHHHHHcCCcEEEEcccC
Q 028129 159 RLGEGSSKP-TAIIGDVADELNLDLVIISMEA 189 (213)
Q Consensus 159 ~v~~G~~~p-~~~Il~~A~e~~aDLIVmG~~g 189 (213)
.+ + ...+.++|+++++|.|+.|.+.
T Consensus 240 vv------~~~~~~~~~A~~~ga~~I~tG~~~ 265 (307)
T 1vbk_A 240 VA------ESFDRVLKLIRDFGVKGVIKGLRP 265 (307)
T ss_dssp EE------SSHHHHHHHHHHHTCCEEECCCCG
T ss_pred Ee------CCCHHHHHHHHHcCCCEEEECccc
Confidence 23 3 4445599999999999999973
No 157
>3g40_A Na-K-CL cotransporter; alpha/beta fold 10-stranded twisted beta sheet, transport protein; 1.90A {Methanosarcina acetivorans}
Probab=55.90 E-value=93 Score=26.27 Aligned_cols=115 Identities=11% Similarity=0.109 Sum_probs=70.0
Q ss_pred cEEEEeeCCCCCCCHHHHHHHHHHHHHHhhcCCEEEEEEEeCCCCCChhhHHHHHHHHHHHHHhCCCCceeEEEEEcccC
Q 028129 85 HLLLPITDQNPYLSEGTRQAAATTAALAKKYGADITVVVIDERQKESLPEHENRLSSIRWHLSEGGFQEFRLLERLGEGS 164 (213)
Q Consensus 85 ~ILV~vD~~~~~~S~~s~~Al~~A~~LA~~~~a~L~ll~V~~~~~~~~~~~~~~l~~~~~~l~~~g~~~~~v~~~v~~G~ 164 (213)
+|||++. ........++++.++... .+-++++.+......+ ....+++.+.+.+.+.|+. ....++..+
T Consensus 22 ~iLV~sg-----~p~~~~~li~la~~lt~~-~G~ltv~~i~p~~~~~--~l~~ql~~l~~~l~~r~v~---a~~~vi~a~ 90 (294)
T 3g40_A 22 NLLVPVE-----DPRELMGTFDFLRDITYP-KGSVKLLGLAGNTDKE--NLLSQLPSISEGFQEEGVF---SSWTIIDTA 90 (294)
T ss_dssp EEEEEES-----CHHHHHHHHHHHHHHHTT-TCEEEEEECC---CTT--CHHHHHHHHHHHHHHTTCE---EEEEEC---
T ss_pred cEEEecC-----CchhhhhHHHHHHHhccC-ceeEEEEEEccCCCcc--HHHHHHHHHHHHHHhCCce---eEEEEEecC
Confidence 7999998 355788899999998865 4568888775433222 1022256777788888887 666666555
Q ss_pred CchHHHHHHHHHHc-----CCcEEEEcccCCCCCCchH--HH--HHhcCCCcEEEEc
Q 028129 165 SKPTAIIGDVADEL-----NLDLVIISMEAIHSKHVDA--NL--LAEFIPCPVLLLP 212 (213)
Q Consensus 165 ~~p~~~Il~~A~e~-----~aDLIVmG~~g~~~~Gs~~--~~--vl~~a~cPVLvVp 212 (213)
++...+....+.+ ....|+||..... ..... .. -+.+...-|++++
T Consensus 91 -d~~~G~~~lvq~yglg~l~PNTilLg~~~~~-e~~~~y~~~i~~~~~~~~nVlil~ 145 (294)
T 3g40_A 91 -EFEENLVVGMEALTGSFFRPSILFLRLPENR-DRDEEIREIIRKASMYRMGVLLFS 145 (294)
T ss_dssp ---CHHHHHHHHHHTTCSSCSCEEEEECCSSG-GGHHHHHHHHHHHHHTTCEEEEEE
T ss_pred -ChhHHHHHHHHHcCCCCCCCCEEEeCCCCCh-hhhHHHHHHHHHHHHhCceEEEEe
Confidence 6888888877776 5678888876431 11111 11 1566677777654
No 158
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0
Probab=55.35 E-value=9.2 Score=26.83 Aligned_cols=13 Identities=15% Similarity=-0.148 Sum_probs=6.0
Q ss_pred HHHcCCcEEEEcc
Q 028129 175 ADELNLDLVIISM 187 (213)
Q Consensus 175 A~e~~aDLIVmG~ 187 (213)
.++..+|+|++..
T Consensus 46 l~~~~~dlvi~D~ 58 (136)
T 3kto_A 46 QISDDAIGMIIEA 58 (136)
T ss_dssp CCCTTEEEEEEET
T ss_pred HhccCCCEEEEeC
Confidence 3344455555543
No 159
>3t8y_A CHEB, chemotaxis response regulator protein-glutamate methylesterase; CHEA, hydrolase; 1.90A {Thermotoga maritima}
Probab=54.88 E-value=57 Score=23.51 Aligned_cols=17 Identities=29% Similarity=0.403 Sum_probs=8.7
Q ss_pred HHHHHHcCCcEEEEccc
Q 028129 172 GDVADELNLDLVIISME 188 (213)
Q Consensus 172 l~~A~e~~aDLIVmG~~ 188 (213)
++..++..+|+||+...
T Consensus 64 l~~l~~~~~dlvilD~~ 80 (164)
T 3t8y_A 64 VEKAIELKPDVITMDIE 80 (164)
T ss_dssp HHHHHHHCCSEEEECSS
T ss_pred HHHhccCCCCEEEEeCC
Confidence 33444445666666554
No 160
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=54.33 E-value=28 Score=27.14 Aligned_cols=41 Identities=22% Similarity=0.331 Sum_probs=31.0
Q ss_pred HHHHHHhCCCCceeEEEEEcccCCchHHHHHHHHHHcCCcEEEEccc
Q 028129 142 IRWHLSEGGFQEFRLLERLGEGSSKPTAIIGDVADELNLDLVIISME 188 (213)
Q Consensus 142 ~~~~l~~~g~~~~~v~~~v~~G~~~p~~~Il~~A~e~~aDLIVmG~~ 188 (213)
+...+...|++ +.. +... -|.+.|++.+++.++|+|.+...
T Consensus 108 va~~l~~~G~~---v~~-LG~~--vp~~~l~~~~~~~~~d~v~lS~~ 148 (210)
T 1y80_A 108 VAMMLESGGFT---VYN-LGVD--IEPGKFVEAVKKYQPDIVGMSAL 148 (210)
T ss_dssp HHHHHHHTTCE---EEE-CCSS--BCHHHHHHHHHHHCCSEEEEECC
T ss_pred HHHHHHHCCCE---EEE-CCCC--CCHHHHHHHHHHcCCCEEEEecc
Confidence 34467778888 542 3222 58999999999999999999875
No 161
>3s40_A Diacylglycerol kinase; structural genomics, the center for structural genomics of infectious diseases, csgid, transfer; 2.10A {Bacillus anthracis} PDB: 3t5p_A
Probab=54.32 E-value=39 Score=28.03 Aligned_cols=39 Identities=10% Similarity=0.130 Sum_probs=20.3
Q ss_pred CCCcEEEEeeCCCCCCCHHHHHHHHHHHHHHhhcCCEEEEE
Q 028129 82 NFKHLLLPITDQNPYLSEGTRQAAATTAALAKKYGADITVV 122 (213)
Q Consensus 82 ~~k~ILV~vD~~~~~~S~~s~~Al~~A~~LA~~~~a~L~ll 122 (213)
+++++++-+++.. +.....+.++....+....+.++.+.
T Consensus 7 ~m~~~~vi~Np~s--G~~~~~~~~~~i~~~l~~~~~~~~~~ 45 (304)
T 3s40_A 7 KFEKVLLIVNPKA--GQGDLHTNLTKIVPPLAAAFPDLHIL 45 (304)
T ss_dssp SCSSEEEEECTTC--SSSCHHHHHHHHHHHHHHHCSEEEEE
T ss_pred CCCEEEEEECccc--CCCchHHHHHHHHHHHHHcCCeEEEE
Confidence 3677777777522 22223344455555444555555544
No 162
>1ni5_A Putative cell cycle protein MESJ; structural genomics, ATPase, PP-type, putative cell cycle PR PSI, protein structure initiative; 2.65A {Escherichia coli} SCOP: b.153.1.2 c.26.2.5 d.229.1.1
Probab=53.98 E-value=81 Score=27.64 Aligned_cols=97 Identities=5% Similarity=0.011 Sum_probs=60.3
Q ss_pred cCCCcEEEEeeCCCCCCCHHHHHHHHHHHHHHhh-cCCEEEEEEEeCCCCCChhhHHHHHHHHHHHHHhCCCCceeEEEE
Q 028129 81 TNFKHLLLPITDQNPYLSEGTRQAAATTAALAKK-YGADITVVVIDERQKESLPEHENRLSSIRWHLSEGGFQEFRLLER 159 (213)
Q Consensus 81 ~~~k~ILV~vD~~~~~~S~~s~~Al~~A~~LA~~-~~a~L~ll~V~~~~~~~~~~~~~~l~~~~~~l~~~g~~~~~v~~~ 159 (213)
..-++|+|++. |..+|..++.....+... .+.++.++|++...... .+...+.+++.....|++ +.+...
T Consensus 11 ~~~~~vlVa~S-----GG~DS~~Ll~ll~~~~~~~~g~~v~avhvdhglr~~---s~~~~~~v~~~~~~lgi~-~~v~~~ 81 (433)
T 1ni5_A 11 LTSRQILVAFS-----GGLDSTVLLHQLVQWRTENPGVALRAIHVHHGLSAN---ADAWVTHCENVCQQWQVP-LVVERV 81 (433)
T ss_dssp TTCSEEEEECC-----SBHHHHHHHHHHHHHHTTSTTCEEEEEEECCSCCSS---HHHHHHHHHHHHHHTTCC-EEEECC
T ss_pred CCCCEEEEEEc-----chHHHHHHHHHHHHHHHhcCCCeEEEEEEECCCCcc---cHHHHHHHHHHHHHcCCc-EEEEEe
Confidence 44578999999 889999888888877766 67899999998765422 222334455556666876 222111
Q ss_pred -E-cccCCch--------HHHHHHHHHHcCCcEEEEcccC
Q 028129 160 -L-GEGSSKP--------TAIIGDVADELNLDLVIISMEA 189 (213)
Q Consensus 160 -v-~~G~~~p--------~~~Il~~A~e~~aDLIVmG~~g 189 (213)
. ..|. .+ ...+.++++ ++|.|+.|++.
T Consensus 82 ~~~~~~~-~~e~~aR~~Ry~~l~~~a~--~~~~i~tgH~~ 118 (433)
T 1ni5_A 82 QLAQEGL-GIEAQARQARYQAFARTLL--PGEVLVTAQHL 118 (433)
T ss_dssp CCCCSSS-TTTTHHHHHHHHHHHHTCC--TTEEEECCCCH
T ss_pred cCCCCCC-CHHHHHHHHHHHHHHHHHh--hCCeEEeeccc
Confidence 1 1122 11 122333333 48999999975
No 163
>1jkx_A GART;, phosphoribosylglycinamide formyltransferase; purine biosynthesis, anti-cancer agent; HET: 138; 1.60A {Escherichia coli} SCOP: c.65.1.1 PDB: 1cdd_A 1cde_A* 1c2t_A* 1grc_A 1gar_A* 2gar_A 3gar_A 1c3e_A*
Probab=53.67 E-value=81 Score=24.93 Aligned_cols=86 Identities=10% Similarity=0.034 Sum_probs=47.7
Q ss_pred cEEEEeeCCCCCCCHHHHHHHHHHHHHHhhcCCEEEEEEEeCCCCCChhhHHHHHHHHHHHHHhCCCCceeEEEEEcccC
Q 028129 85 HLLLPITDQNPYLSEGTRQAAATTAALAKKYGADITVVVIDERQKESLPEHENRLSSIRWHLSEGGFQEFRLLERLGEGS 164 (213)
Q Consensus 85 ~ILV~vD~~~~~~S~~s~~Al~~A~~LA~~~~a~L~ll~V~~~~~~~~~~~~~~l~~~~~~l~~~g~~~~~v~~~v~~G~ 164 (213)
+|+|-+. ++....+++-.+.. ....+.++.+|....+.. ...+..++.|+. +...-...-
T Consensus 2 ri~vl~S-----g~gsnl~ali~~~~-~~~~~~~i~~Vis~~~~~-----------~~~~~A~~~gIp---~~~~~~~~~ 61 (212)
T 1jkx_A 2 NIVVLIS-----GNGSNLQAIIDACK-TNKIKGTVRAVFSNKADA-----------FGLERARQAGIA---THTLIASAF 61 (212)
T ss_dssp EEEEEES-----SCCHHHHHHHHHHH-TTSSSSEEEEEEESCTTC-----------HHHHHHHHTTCE---EEECCGGGC
T ss_pred EEEEEEE-----CCcHHHHHHHHHHH-cCCCCceEEEEEeCCCch-----------HHHHHHHHcCCc---EEEeCcccc
Confidence 5666666 45555555544422 122356666665443221 113455677888 432111110
Q ss_pred Cc---hHHHHHHHHHHcCCcEEEEcccCC
Q 028129 165 SK---PTAIIGDVADELNLDLVIISMEAI 190 (213)
Q Consensus 165 ~~---p~~~Il~~A~e~~aDLIVmG~~g~ 190 (213)
.+ -.+++++..+++++|+||+...++
T Consensus 62 ~~r~~~~~~~~~~l~~~~~Dliv~agy~~ 90 (212)
T 1jkx_A 62 DSREAYDRELIHEIDMYAPDVVVLAGFMR 90 (212)
T ss_dssp SSHHHHHHHHHHHHGGGCCSEEEESSCCS
T ss_pred cchhhccHHHHHHHHhcCCCEEEEeChhh
Confidence 00 136788999999999999988765
No 164
>3q9s_A DNA-binding response regulator; DNA binding protein; 2.40A {Deinococcus radiodurans}
Probab=53.51 E-value=43 Score=26.40 Aligned_cols=7 Identities=14% Similarity=0.188 Sum_probs=3.0
Q ss_pred cEEEEee
Q 028129 85 HLLLPIT 91 (213)
Q Consensus 85 ~ILV~vD 91 (213)
+|||.=|
T Consensus 39 ~ILivdd 45 (249)
T 3q9s_A 39 RILVIED 45 (249)
T ss_dssp EEEEECS
T ss_pred EEEEEEC
Confidence 4544333
No 165
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=53.31 E-value=90 Score=25.36 Aligned_cols=17 Identities=18% Similarity=0.432 Sum_probs=7.4
Q ss_pred HHHHHHHcCCcEEEEcc
Q 028129 171 IGDVADELNLDLVIISM 187 (213)
Q Consensus 171 Il~~A~e~~aDLIVmG~ 187 (213)
+.+.+++.++=+|+++.
T Consensus 135 ~~~~~~~~~iPvV~~~~ 151 (338)
T 3dbi_A 135 IDDIIDAHSQPIMVLNR 151 (338)
T ss_dssp HHHHHHHCSSCEEEESS
T ss_pred HHHHHHcCCCCEEEEcC
Confidence 44444444444444443
No 166
>2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix B (MTAC); HET: B13; 2.50A {Methanosarcina barkeri}
Probab=53.25 E-value=49 Score=26.85 Aligned_cols=41 Identities=12% Similarity=0.177 Sum_probs=30.5
Q ss_pred HHHHHhCCCCceeEEEEEcccCCchHHHHHHHHHHcCCcEEEEcccC
Q 028129 143 RWHLSEGGFQEFRLLERLGEGSSKPTAIIGDVADELNLDLVIISMEA 189 (213)
Q Consensus 143 ~~~l~~~g~~~~~v~~~v~~G~~~p~~~Il~~A~e~~aDLIVmG~~g 189 (213)
...+...|++ +.. +... -|.+.|++.++++++|+|.+..-.
T Consensus 144 a~~L~~~G~~---Vi~-LG~~--vp~e~l~~~~~~~~~d~V~lS~l~ 184 (258)
T 2i2x_B 144 TALLRANGYN---VVD-LGRD--VPAEEVLAAVQKEKPIMLTGTALM 184 (258)
T ss_dssp HHHHHHTTCE---EEE-EEEE--CCSHHHHHHHHHHCCSEEEEECCC
T ss_pred HHHHHHCCCE---EEE-CCCC--CCHHHHHHHHHHcCCCEEEEEeec
Confidence 3457778888 543 2222 388999999999999999998753
No 167
>3u7q_B Nitrogenase molybdenum-iron protein beta chain; multiple rossmann fold domains, reductase, nitrogen fixing, oxidoreductase; HET: HCA ICS 1CL CLF; 1.00A {Azotobacter vinelandii} SCOP: c.92.2.3 PDB: 1fp4_B* 1g21_B* 1g20_B* 1m1n_B* 1l5h_B* 1m1y_B* 1m34_B* 1n2c_B* 2afh_B* 2afi_B* 2afk_B* 2min_B* 3k1a_B* 3min_B*
Probab=52.82 E-value=61 Score=29.42 Aligned_cols=85 Identities=11% Similarity=0.002 Sum_probs=50.0
Q ss_pred CCCcEEEEeeCCCCCCCHHHHHHHHHHHHHHhhcCCEEEEEEEeCCCCCChhhHHHHHHHHHHHHHhC--CCCceeEEEE
Q 028129 82 NFKHLLLPITDQNPYLSEGTRQAAATTAALAKKYGADITVVVIDERQKESLPEHENRLSSIRWHLSEG--GFQEFRLLER 159 (213)
Q Consensus 82 ~~k~ILV~vD~~~~~~S~~s~~Al~~A~~LA~~~~a~L~ll~V~~~~~~~~~~~~~~l~~~~~~l~~~--g~~~~~v~~~ 159 (213)
.-|+++|..| ...++..+..|. ..|.++..+...... ++.+ +.+++.+.+. |.. . .
T Consensus 363 ~GKrvaI~gd---------~~~~~~la~fL~-elGm~vv~v~~~~~~----~~~~---~~~~~~l~~~~~~~~---~--~ 420 (523)
T 3u7q_B 363 HGKRFALWGD---------PDFVMGLVKFLL-ELGCEPVHILCHNGN----KRWK---KAVDAILAASPYGKN---A--T 420 (523)
T ss_dssp TTCEEEEECS---------HHHHHHHHHHHH-HTTCEEEEEEETTCC----HHHH---HHHHHHHHTSGGGTT---C--E
T ss_pred CCCEEEEECC---------chHHHHHHHHHH-HcCCEEEEEEeCCCC----HHHH---HHHHHHHhhccCCCC---c--E
Confidence 3478888877 345555565555 688887766554322 1222 2233333321 222 2 2
Q ss_pred EcccCCchHHHHHHHHHHcCCcEEEEcccCC
Q 028129 160 LGEGSSKPTAIIGDVADELNLDLVIISMEAI 190 (213)
Q Consensus 160 v~~G~~~p~~~Il~~A~e~~aDLIVmG~~g~ 190 (213)
+..|. -..++.+.+++.++||||=+++++
T Consensus 421 v~~~~--D~~~l~~~i~~~~pDLlig~s~~k 449 (523)
T 3u7q_B 421 VYIGK--DLWHLRSLVFTDKPDFMIGNSYGK 449 (523)
T ss_dssp EEESC--CHHHHHHHHHHTCCSEEEECTTHH
T ss_pred EEECC--CHHHHHHHHHhcCCCEEEECccHH
Confidence 33354 356788999999999999888765
No 168
>3c3w_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 2.20A {Mycobacterium tuberculosis}
Probab=52.45 E-value=30 Score=26.72 Aligned_cols=43 Identities=9% Similarity=0.003 Sum_probs=22.8
Q ss_pred HHHHHHHHHcCCcEEEEcccCCCCCCchHHHHHh--cCCCcEEEE
Q 028129 169 AIIGDVADELNLDLVIISMEAIHSKHVDANLLAE--FIPCPVLLL 211 (213)
Q Consensus 169 ~~Il~~A~e~~aDLIVmG~~g~~~~Gs~~~~vl~--~a~cPVLvV 211 (213)
++.++..++..+|+|++...-....|.....-++ ...+||+++
T Consensus 37 ~~al~~l~~~~~dlvllD~~lp~~~g~~~~~~lr~~~~~~~ii~l 81 (225)
T 3c3w_A 37 AEAMARVPAARPDVAVLDVRLPDGNGIELCRDLLSRMPDLRCLIL 81 (225)
T ss_dssp HHHHHHHHHHCCSEEEECSEETTEEHHHHHHHHHHHCTTCEEEEG
T ss_pred HHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHhCCCCcEEEE
Confidence 3444555566788888876432113443332232 345777664
No 169
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=51.88 E-value=88 Score=24.83 Aligned_cols=76 Identities=11% Similarity=0.056 Sum_probs=36.6
Q ss_pred CHHHHHHHHHHHHHHhhcCCEEEEEEEeCCCCCChhhHHHHHHHHHHHHHhCCCCceeEEEEEcccCCchHHHHHHHHHH
Q 028129 98 SEGTRQAAATTAALAKKYGADITVVVIDERQKESLPEHENRLSSIRWHLSEGGFQEFRLLERLGEGSSKPTAIIGDVADE 177 (213)
Q Consensus 98 S~~s~~Al~~A~~LA~~~~a~L~ll~V~~~~~~~~~~~~~~l~~~~~~l~~~g~~~~~v~~~v~~G~~~p~~~Il~~A~e 177 (213)
++.-...++-..+.+.+.|-.+.+..... . .. . ..+.+.+...+++ -.... +. +.....++.+.+
T Consensus 22 ~~~~~~~~~gi~~~a~~~g~~~~~~~~~~-~-~~---~----~~~~~~l~~~~vd---GiIi~--~~-~~~~~~~~~l~~ 86 (294)
T 3qk7_A 22 NSTFLEMISWIGIELGKRGLDLLLIPDEP-G-EK---Y----QSLIHLVETRRVD---ALIVA--HT-QPEDFRLQYLQK 86 (294)
T ss_dssp CHHHHHHHHHHHHHHHHTTCEEEEEEECT-T-CC---C----HHHHHHHHHTCCS---EEEEC--SC-CSSCHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHCCCEEEEEeCCC-h-hh---H----HHHHHHHHcCCCC---EEEEe--CC-CCChHHHHHHHh
Confidence 34445555555556666777666665432 1 10 0 1122233444555 22111 21 122245566666
Q ss_pred cCCcEEEEccc
Q 028129 178 LNLDLVIISME 188 (213)
Q Consensus 178 ~~aDLIVmG~~ 188 (213)
.++=+|+++..
T Consensus 87 ~~iPvV~~~~~ 97 (294)
T 3qk7_A 87 QNFPFLALGRS 97 (294)
T ss_dssp TTCCEEEESCC
T ss_pred CCCCEEEECCC
Confidence 67777777764
No 170
>2r25_B Osmosensing histidine protein kinase SLN1; alpha5-BETA5, response regulator, four helix bundle, histidine phosphotransfer (HPT) protein; 1.70A {Saccharomyces cerevisiae} SCOP: c.23.1.1 PDB: 1oxk_B 1oxb_B
Probab=51.87 E-value=56 Score=22.51 Aligned_cols=34 Identities=9% Similarity=0.228 Sum_probs=16.3
Q ss_pred cCCcEEEEcccCCCCCCchHHHHHhc---CCCcEEEE
Q 028129 178 LNLDLVIISMEAIHSKHVDANLLAEF---IPCPVLLL 211 (213)
Q Consensus 178 ~~aDLIVmG~~g~~~~Gs~~~~vl~~---a~cPVLvV 211 (213)
..+|+|++...-....|......+++ ..+||+++
T Consensus 51 ~~~dlvllD~~mp~~~G~~~~~~lr~~~~~~~~ii~l 87 (133)
T 2r25_B 51 ENYNMIFMDVQMPKVDGLLSTKMIRRDLGYTSPIVAL 87 (133)
T ss_dssp CCCSEEEECSCCSSSCHHHHHHHHHHHSCCCSCEEEE
T ss_pred CCCCEEEEeCCCCCCChHHHHHHHHhhcCCCCCEEEE
Confidence 45677777654322234443333332 24566654
No 171
>3klo_A Transcriptional regulator VPST; REC domain, HTH domain, DNA-binding, transcription regulation; HET: C2E TAR; 2.80A {Vibrio cholerae} PDB: 3kln_A*
Probab=51.78 E-value=17 Score=28.07 Aligned_cols=45 Identities=4% Similarity=0.080 Sum_probs=24.0
Q ss_pred hHHHHHHHHHHcCCcEEEEcccCCCCCCchHHHHHh---cCCCcEEEE
Q 028129 167 PTAIIGDVADELNLDLVIISMEAIHSKHVDANLLAE---FIPCPVLLL 211 (213)
Q Consensus 167 p~~~Il~~A~e~~aDLIVmG~~g~~~~Gs~~~~vl~---~a~cPVLvV 211 (213)
-.+++...+++..+|+|++...-....|.....-++ ...+||+++
T Consensus 42 ~~~~~~~~~~~~~~dlvllD~~mp~~~G~~~~~~lr~~~~~~~~ii~l 89 (225)
T 3klo_A 42 ELWLEENKPESRSIQMLVIDYSRISDDVLTDYSSFKHISCPDAKEVII 89 (225)
T ss_dssp GHHHHTTCSGGGGCCEEEEEGGGCCHHHHHHHHHHHHHHCTTCEEEEE
T ss_pred cHHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHhhCCCCcEEEE
Confidence 345555555666778888866533112433332232 345777664
No 172
>1vb5_A Translation initiation factor EIF-2B; 2.20A {Pyrococcus horikoshii} SCOP: c.124.1.5
Probab=51.22 E-value=42 Score=27.81 Aligned_cols=79 Identities=10% Similarity=0.151 Sum_probs=44.7
Q ss_pred hcCCEEEEEEEeCCCCCChhhHHHHHHHHHHHHHhCCCCceeEEEEEcccCCchHHHHHHHHHHcCCcEEEEcccCCCCC
Q 028129 114 KYGADITVVVIDERQKESLPEHENRLSSIRWHLSEGGFQEFRLLERLGEGSSKPTAIIGDVADELNLDLVIISMEAIHSK 193 (213)
Q Consensus 114 ~~~a~L~ll~V~~~~~~~~~~~~~~l~~~~~~l~~~g~~~~~v~~~v~~G~~~p~~~Il~~A~e~~aDLIVmG~~g~~~~ 193 (213)
..|.+++++.....+. .+. ....|.+.+.|++ +.. + ++ ...-.++ + ++|.+++|+.+-...
T Consensus 131 ~~~~~~~V~v~etrP~-----~qG--~~~a~~L~~~gI~---vtl-i--~d-sa~~~~m---~--~vd~vivGAd~i~~n 191 (276)
T 1vb5_A 131 ERKKRFKVILTESSPD-----YEG--LHLARELEFSGIE---FEV-I--TD-AQMGLFC---R--EASIAIVGADMITKD 191 (276)
T ss_dssp HTTCCEEEEEECCTTT-----THH--HHHHHHHHHTTCC---EEE-E--CG-GGHHHHH---T--TCSEEEECCSEECTT
T ss_pred HcCCeEEEEEeCCCcc-----hhh--HHHHHHHHHCCCC---EEE-E--cH-HHHHHHH---c--cCCEEEEcccEEecC
Confidence 3355677665443321 112 2334566677888 542 2 23 2333333 2 699999999765333
Q ss_pred C-------chH-HHHHhcCCCcEEEE
Q 028129 194 H-------VDA-NLLAEFIPCPVLLL 211 (213)
Q Consensus 194 G-------s~~-~~vl~~a~cPVLvV 211 (213)
| .-. ...+++..+||+++
T Consensus 192 G~v~nkiGt~~iA~~A~~~~vp~~V~ 217 (276)
T 1vb5_A 192 GYVVNKAGTYLLALACHENAIPFYVA 217 (276)
T ss_dssp SCEEEETTHHHHHHHHHHTTCCEEEE
T ss_pred CCEeechhHHHHHHHHHHcCCCEEEe
Confidence 2 222 23488889999986
No 173
>3a11_A Translation initiation factor EIF-2B, delta subun; isomerase, hexamer, rossmann fold; 2.50A {Thermococcus kodakaraensis} PDB: 3a9c_A* 3vm6_A*
Probab=51.07 E-value=17 Score=31.33 Aligned_cols=81 Identities=19% Similarity=0.174 Sum_probs=46.2
Q ss_pred HhhcCCEEEEEEEeCCCCCChhhHHHHHHHHHHHHHhCCCCceeEEEEEcccCCchHHHHHHHHHHcCCcEEEEcccCCC
Q 028129 112 AKKYGADITVVVIDERQKESLPEHENRLSSIRWHLSEGGFQEFRLLERLGEGSSKPTAIIGDVADELNLDLVIISMEAIH 191 (213)
Q Consensus 112 A~~~~a~L~ll~V~~~~~~~~~~~~~~l~~~~~~l~~~g~~~~~v~~~v~~G~~~p~~~Il~~A~e~~aDLIVmG~~g~~ 191 (213)
|.+.|.++++++....+. .+. ....|.+.+.|++ +.... .+ ....++ .++|.||+|+..-.
T Consensus 161 A~~~gk~~~V~v~EtRP~-----~qG--rltA~eL~~~GI~---vtlI~-Ds---a~~~~M-----~~Vd~VivGAd~V~ 221 (338)
T 3a11_A 161 AWEQGKDIKVIVTETRPK-----WQG--KITAKELASYGIP---VIYVV-DS---AARHYM-----KMTDKVVMGADSIT 221 (338)
T ss_dssp HHHTTCCCEEEEECCTTT-----THH--HHHHHHHHHTTCC---EEEEC-GG---GTTTTG-----GGCSEEEECCSEEC
T ss_pred HHHCCCeEEEEEeCCCCc-----hhh--HHHHHHHHhCCCC---EEEEe-hH---HHHHHH-----HhCCEEEECccEEe
Confidence 444455666655443321 122 2335678888998 65332 11 222222 45999999997542
Q ss_pred CC-------CchHH-HHHhcCCCcEEEE
Q 028129 192 SK-------HVDAN-LLAEFIPCPVLLL 211 (213)
Q Consensus 192 ~~-------Gs~~~-~vl~~a~cPVLvV 211 (213)
.+ |.-.. .++++-.+|++++
T Consensus 222 anG~v~NKiGT~~lAl~Ak~~~vPfyV~ 249 (338)
T 3a11_A 222 VNGAVINKIGTALIALTAKEHRVWTMIA 249 (338)
T ss_dssp TTSCEEEETTHHHHHHHHHHTTCEEEEE
T ss_pred cCCCEeecccHHHHHHHHHHcCCCEEEe
Confidence 23 33332 3488899999986
No 174
>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei}
Probab=50.70 E-value=1.1e+02 Score=25.55 Aligned_cols=86 Identities=15% Similarity=0.061 Sum_probs=54.3
Q ss_pred CCcEEEEeeCCCCCCCHHHHHHHHHHHHHHhhcCCEEEEEEEeCCCCCChhhHHHHHHHHHHHHHhCCCCceeEEEEEcc
Q 028129 83 FKHLLLPITDQNPYLSEGTRQAAATTAALAKKYGADITVVVIDERQKESLPEHENRLSSIRWHLSEGGFQEFRLLERLGE 162 (213)
Q Consensus 83 ~k~ILV~vD~~~~~~S~~s~~Al~~A~~LA~~~~a~L~ll~V~~~~~~~~~~~~~~l~~~~~~l~~~g~~~~~v~~~v~~ 162 (213)
.++|+|-+. ++..+.+++-.+..- ...++++.++....+. . ....++.|++ +...-..
T Consensus 95 ~~ri~vl~S-----g~g~~l~~ll~~~~~-g~l~~~i~~Visn~~~------~-------~~~A~~~gIp---~~~~~~~ 152 (292)
T 3lou_A 95 RPKVLIMVS-----KLEHCLADLLFRWKM-GELKMDIVGIVSNHPD------F-------APLAAQHGLP---FRHFPIT 152 (292)
T ss_dssp CCEEEEEEC-----SCCHHHHHHHHHHHH-TSSCCEEEEEEESSST------T-------HHHHHHTTCC---EEECCCC
T ss_pred CCEEEEEEc-----CCCcCHHHHHHHHHc-CCCCcEEEEEEeCcHH------H-------HHHHHHcCCC---EEEeCCC
Confidence 568988888 666677777666443 3346787776655532 1 1235667888 4321111
Q ss_pred cCCch--HHHHHHHHHHcCCcEEEEcccCC
Q 028129 163 GSSKP--TAIIGDVADELNLDLVIISMEAI 190 (213)
Q Consensus 163 G~~~p--~~~Il~~A~e~~aDLIVmG~~g~ 190 (213)
..++. .+++++..+++++|+||+...++
T Consensus 153 ~~~r~~~~~~~~~~l~~~~~Dlivla~y~~ 182 (292)
T 3lou_A 153 ADTKAQQEAQWLDVFETSGAELVILARYMQ 182 (292)
T ss_dssp SSCHHHHHHHHHHHHHHHTCSEEEESSCCS
T ss_pred cCCHHHHHHHHHHHHHHhCCCEEEecCchh
Confidence 11011 35799999999999999998775
No 175
>2pg3_A Queuosine biosynthesis protein QUEC; YP_049261.1, hypothetical protein, structural genomics, JOIN for structural genomics; 2.40A {Pectobacterium atrosepticum SCRI1043} SCOP: c.26.2.1
Probab=50.26 E-value=89 Score=24.40 Aligned_cols=37 Identities=11% Similarity=0.113 Sum_probs=25.3
Q ss_pred CCcEEEEeeCCCCCCCHHHHHHHHHHHHHHhhcCCEEEEEEEeCCC
Q 028129 83 FKHLLLPITDQNPYLSEGTRQAAATTAALAKKYGADITVVVIDERQ 128 (213)
Q Consensus 83 ~k~ILV~vD~~~~~~S~~s~~Al~~A~~LA~~~~a~L~ll~V~~~~ 128 (213)
+++++|.+. |..+|.-++..+.+. +.++..++++...
T Consensus 2 ~~kvvv~lS-----GG~DS~~~l~ll~~~----~~~v~av~~~~g~ 38 (232)
T 2pg3_A 2 MKRAVVVFS-----GGQDSTTCLIQALQD----YDDVHCITFDYGQ 38 (232)
T ss_dssp CCEEEEECC-----SSHHHHHHHHHHHHH----CSEEEEEEEESSS
T ss_pred CCCEEEEec-----CcHHHHHHHHHHHHc----CCCEEEEEEECCC
Confidence 367889988 777777666655432 3578888877654
No 176
>1i3c_A Response regulator RCP1; phytochrome, signaling protein; 1.90A {Synechocystis SP} SCOP: c.23.1.1 PDB: 1jlk_A
Probab=50.23 E-value=63 Score=22.66 Aligned_cols=34 Identities=12% Similarity=0.168 Sum_probs=17.7
Q ss_pred cCCcEEEEcccCCCCCCchHHHHHhc----CCCcEEEE
Q 028129 178 LNLDLVIISMEAIHSKHVDANLLAEF----IPCPVLLL 211 (213)
Q Consensus 178 ~~aDLIVmG~~g~~~~Gs~~~~vl~~----a~cPVLvV 211 (213)
..+|+|++...-....|..-...+++ ..+||+++
T Consensus 60 ~~~dlillD~~lp~~~g~~l~~~l~~~~~~~~~piiil 97 (149)
T 1i3c_A 60 PRPNLILLDLNLPKKDGREVLAEIKQNPDLKRIPVVVL 97 (149)
T ss_dssp CCCSEEEECSCCSSSCHHHHHHHHHHCTTTTTSCEEEE
T ss_pred CCCCEEEEeCCCCCCcHHHHHHHHHhCcCcCCCeEEEE
Confidence 46788887665332234443333433 34677664
No 177
>1a2o_A CHEB methylesterase; bacterial chemotaxis, adaptation, serine hydrolase; 2.40A {Salmonella typhimurium} SCOP: c.23.1.1 c.40.1.1
Probab=50.12 E-value=87 Score=26.52 Aligned_cols=43 Identities=19% Similarity=0.326 Sum_probs=26.3
Q ss_pred HHHHHHHHHcCCcEEEEcccCCCCCCchHHHH-HhcCCCcEEEE
Q 028129 169 AIIGDVADELNLDLVIISMEAIHSKHVDANLL-AEFIPCPVLLL 211 (213)
Q Consensus 169 ~~Il~~A~e~~aDLIVmG~~g~~~~Gs~~~~v-l~~a~cPVLvV 211 (213)
++.++..++.++|+|++...-....|.....- ....++||+++
T Consensus 39 ~eAl~~l~~~~pDlVllDi~mp~~dGlell~~l~~~~p~pVIvl 82 (349)
T 1a2o_A 39 LVARDLIKKFNPDVLTLDVEMPRMDGLDFLEKLMRLRPMPVVMV 82 (349)
T ss_dssp HHHHHHHHHHCCSEEEEECCCSSSCHHHHHHHHHHSSCCCEEEE
T ss_pred HHHHHHHhccCCCEEEEECCCCCCCHHHHHHHHHhcCCCcEEEE
Confidence 44556666778999999875432245544333 33456888775
No 178
>1g63_A Epidermin modifying enzyme EPID; alpha, beta protein, rossmann like fold, oxidoreductase; HET: FMN; 2.50A {Staphylococcus epidermidis} SCOP: c.34.1.1 PDB: 1g5q_A*
Probab=50.07 E-value=12 Score=29.21 Aligned_cols=38 Identities=13% Similarity=0.121 Sum_probs=31.0
Q ss_pred CCCcEEEEeeCCCCCCCHHHHHHHHHHHHHHhhcCCEEEEEEEe
Q 028129 82 NFKHLLLPITDQNPYLSEGTRQAAATTAALAKKYGADITVVVID 125 (213)
Q Consensus 82 ~~k~ILV~vD~~~~~~S~~s~~Al~~A~~LA~~~~a~L~ll~V~ 125 (213)
|+++|++++. |+-...++++....|.+. |.+++++.-.
T Consensus 1 ~~k~IllgvT-----Gs~aa~k~~~l~~~L~~~-g~~V~vv~T~ 38 (181)
T 1g63_A 1 MYGKLLICAT-----ASINVININHYIVELKQH-FDEVNILFSP 38 (181)
T ss_dssp CCCCEEEEEC-----SCGGGGGHHHHHHHHTTT-SSCEEEEECG
T ss_pred CCCEEEEEEE-----CHHHHHHHHHHHHHHHHC-CCEEEEEEch
Confidence 5789999999 899888999888888554 8888877543
No 179
>2hqr_A Putative transcriptional regulator; phosporylation-independent response regulator, H. pylori, SY dimer, signaling protein; NMR {Helicobacter pylori}
Probab=50.00 E-value=39 Score=25.74 Aligned_cols=39 Identities=18% Similarity=0.008 Sum_probs=20.7
Q ss_pred HHHHHHHHHcCCcEEEEcccCCCCCCchHHHHHhc-C-CCcEEEE
Q 028129 169 AIIGDVADELNLDLVIISMEAIHSKHVDANLLAEF-I-PCPVLLL 211 (213)
Q Consensus 169 ~~Il~~A~e~~aDLIVmG~~g~~~~Gs~~~~vl~~-a-~cPVLvV 211 (213)
++.++..++..+|+|+| .+. .|.....-+++ . .+||+++
T Consensus 34 ~~al~~l~~~~~dlvil--p~~--~g~~~~~~lr~~~~~~~ii~l 74 (223)
T 2hqr_A 34 EDGEYLMDIRNYDLVMV--SDK--NALSFVSRIKEKHSSIVVLVS 74 (223)
T ss_dssp HHHHHHHTTSCCSEEEE--CCT--THHHHHHHHHHHCTTSEEEEE
T ss_pred HHHHHHHhcCCCCEEEe--CCC--CHHHHHHHHHhCCCCCcEEEE
Confidence 34455566677888882 222 45443333332 3 5777765
No 180
>1np7_A DNA photolyase; protein with FAD cofactor; HET: DNA FAD; 1.90A {Synechocystis SP} SCOP: a.99.1.1 c.28.1.1
Probab=49.90 E-value=89 Score=27.80 Aligned_cols=80 Identities=18% Similarity=0.171 Sum_probs=51.0
Q ss_pred CCHHHHHHHHHHHHHHhhcCCEEEEEEEeCCCCC----------Chh---hHHHHHHHHHHHHHhCCCCceeEEEEEccc
Q 028129 97 LSEGTRQAAATTAALAKKYGADITVVVIDERQKE----------SLP---EHENRLSSIRWHLSEGGFQEFRLLERLGEG 163 (213)
Q Consensus 97 ~S~~s~~Al~~A~~LA~~~~a~L~ll~V~~~~~~----------~~~---~~~~~l~~~~~~l~~~g~~~~~v~~~v~~G 163 (213)
.--....||..|+. .+..+..|.+.++... +.. -.-+.|.++.+.+.+.|.. +.. ..|
T Consensus 16 LRl~DN~aL~~A~~----~~~~v~~vfi~dp~~~~~~~~~~~~~~~~r~~Fl~~sL~~L~~~L~~~G~~---L~v--~~g 86 (489)
T 1np7_A 16 LRLHDHEPLHRALK----SGLAITAVYCYDPRQFAQTHQGFAKTGPWRSNFLQQSVQNLAESLQKVGNK---LLV--TTG 86 (489)
T ss_dssp CCSTTCHHHHHHHH----TTSEEEEEEEECGGGGSBCTTSCBSSCHHHHHHHHHHHHHHHHHHHHTTCC---EEE--EES
T ss_pred CCcchHHHHHHHHh----cCCCEEEEEEECchhhcccccccCCCCHHHHHHHHHHHHHHHHHHHHCCCc---EEE--EEC
Confidence 33344567776653 2346767766544211 111 1234456666778888888 543 458
Q ss_pred CCchHHHHHHHHHHcCCcEEEEcc
Q 028129 164 SSKPTAIIGDVADELNLDLVIISM 187 (213)
Q Consensus 164 ~~~p~~~Il~~A~e~~aDLIVmG~ 187 (213)
+ +.+.|.+++++.+++.|+.-.
T Consensus 87 ~--~~~~l~~l~~~~~~~~V~~~~ 108 (489)
T 1np7_A 87 L--PEQVIPQIAKQINAKTIYYHR 108 (489)
T ss_dssp C--HHHHHHHHHHHTTEEEEEEEC
T ss_pred C--HHHHHHHHHHHcCCCEEEEec
Confidence 6 999999999999999888864
No 181
>1zh2_A KDP operon transcriptional regulatory protein KDPE; two-component system, gene regulation, transcription factor, KDP potassium transport system; 2.00A {Escherichia coli} SCOP: c.23.1.1 PDB: 1zh4_A
Probab=49.07 E-value=55 Score=21.63 Aligned_cols=13 Identities=23% Similarity=0.437 Sum_probs=7.3
Q ss_pred HHcCCcEEEEccc
Q 028129 176 DELNLDLVIISME 188 (213)
Q Consensus 176 ~e~~aDLIVmG~~ 188 (213)
.+.++|+|++...
T Consensus 42 ~~~~~dlvi~D~~ 54 (121)
T 1zh2_A 42 ATRKPDLIILDLG 54 (121)
T ss_dssp HHHCCSEEEEESE
T ss_pred hcCCCCEEEEeCC
Confidence 3445666666553
No 182
>1w25_A Stalked-cell differentiation controlling protein; two-component system, ggdef domain, cyclic dinucleotide, cyclic-digmp; HET: C2E; 2.70A {Caulobacter vibrioides} SCOP: c.23.1.1 c.23.1.1 d.58.29.2 PDB: 2v0n_A* 2wb4_A*
Probab=48.74 E-value=82 Score=27.07 Aligned_cols=43 Identities=12% Similarity=0.025 Sum_probs=25.8
Q ss_pred HHHHHHHHHcCCcEEEEcccCCCCCCchHHHHHhc----CCCcEEEE
Q 028129 169 AIIGDVADELNLDLVIISMEAIHSKHVDANLLAEF----IPCPVLLL 211 (213)
Q Consensus 169 ~~Il~~A~e~~aDLIVmG~~g~~~~Gs~~~~vl~~----a~cPVLvV 211 (213)
++.++.+++..+|+|++-..-....|......++. ..+||+++
T Consensus 35 ~~al~~~~~~~~dlvllD~~mp~~~G~~~~~~l~~~~~~~~~pii~l 81 (459)
T 1w25_A 35 PTALAMAARDLPDIILLDVMMPGMDGFTVCRKLKDDPTTRHIPVVLI 81 (459)
T ss_dssp HHHHHHHHHHCCSEEEEESCCSSSCHHHHHHHHHHSTTTTTSCEEEE
T ss_pred HHHHHHHhcCCCCEEEEcCCCCCCCHHHHHHHHhcCcccCCCCEEEE
Confidence 34445566678899998775432246554444443 35788775
No 183
>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida}
Probab=48.45 E-value=1.2e+02 Score=25.25 Aligned_cols=86 Identities=12% Similarity=0.071 Sum_probs=53.3
Q ss_pred CCcEEEEeeCCCCCCCHHHHHHHHHHHHHHhhcCCEEEEEEEeCCCCCChhhHHHHHHHHHHHHHhCCCCceeEEEEEcc
Q 028129 83 FKHLLLPITDQNPYLSEGTRQAAATTAALAKKYGADITVVVIDERQKESLPEHENRLSSIRWHLSEGGFQEFRLLERLGE 162 (213)
Q Consensus 83 ~k~ILV~vD~~~~~~S~~s~~Al~~A~~LA~~~~a~L~ll~V~~~~~~~~~~~~~~l~~~~~~l~~~g~~~~~v~~~v~~ 162 (213)
.++|+|-+. ++..+.+++-.+..- ...++++.++....+. . ....++.|++ +...-..
T Consensus 90 ~~ri~vl~S-----g~g~~l~~ll~~~~~-g~l~~~i~~Visn~~~------~-------~~~A~~~gIp---~~~~~~~ 147 (286)
T 3n0v_A 90 RPKVVIMVS-----KADHCLNDLLYRQRI-GQLGMDVVAVVSNHPD------L-------EPLAHWHKIP---YYHFALD 147 (286)
T ss_dssp CCEEEEEES-----SCCHHHHHHHHHHHT-TSSCCEEEEEEESSST------T-------HHHHHHTTCC---EEECCCB
T ss_pred CcEEEEEEe-----CCCCCHHHHHHHHHC-CCCCcEEEEEEeCcHH------H-------HHHHHHcCCC---EEEeCCC
Confidence 558888888 666666666665432 2346777776655532 1 1235567888 4321111
Q ss_pred cCCc--hHHHHHHHHHHcCCcEEEEcccCC
Q 028129 163 GSSK--PTAIIGDVADELNLDLVIISMEAI 190 (213)
Q Consensus 163 G~~~--p~~~Il~~A~e~~aDLIVmG~~g~ 190 (213)
..++ -.+++++..+++++|+||+...++
T Consensus 148 ~~~r~~~~~~~~~~l~~~~~Dlivla~y~~ 177 (286)
T 3n0v_A 148 PKDKPGQERKVLQVIEETGAELVILARYMQ 177 (286)
T ss_dssp TTBHHHHHHHHHHHHHHHTCSEEEESSCCS
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEeccccc
Confidence 1101 135799999999999999998765
No 184
>1sur_A PAPS reductase; assimilatory sulfate reduction, 3-phospho-adenylyl-sulfate reductase, oxidoreductase; 2.00A {Escherichia coli} SCOP: c.26.2.2
Probab=48.39 E-value=92 Score=24.03 Aligned_cols=93 Identities=15% Similarity=0.134 Sum_probs=53.6
Q ss_pred cCC-CcEEEEeeCCCCCCCHHHHHHHHHHHHHHhhcCCEEEEEEEeCCCCCChhhHHHHHHHHHHHHHhCCCCceeEEEE
Q 028129 81 TNF-KHLLLPITDQNPYLSEGTRQAAATTAALAKKYGADITVVVIDERQKESLPEHENRLSSIRWHLSEGGFQEFRLLER 159 (213)
Q Consensus 81 ~~~-k~ILV~vD~~~~~~S~~s~~Al~~A~~LA~~~~a~L~ll~V~~~~~~~~~~~~~~l~~~~~~l~~~g~~~~~v~~~ 159 (213)
..| .+|+|++. |...|.-.+..+..+. -++.+++++.... .++. .+.+++..+..|++ +...
T Consensus 41 ~~~~~~v~Va~S-----GGkDS~vLL~ll~~~~----~~v~~v~vd~g~~--~~e~---~~~v~~~~~~~gi~---~~v~ 103 (215)
T 1sur_A 41 DNLPGEYVLSSS-----FGIQAAVSLHLVNQIR----PDIPVILTDTGYL--FPET---YRFIDELTDKLKLN---LKVY 103 (215)
T ss_dssp HHCCSEEEEECC-----CCTTHHHHHHHHHHHS----TTCEEEEEECSCB--CHHH---HHHHHHHHHHTTCE---EEEE
T ss_pred HHcCCCEEEEec-----CCHHHHHHHHHHHHhC----CCCeEEEeeCCCC--CHHH---HHHHHHHHHHhCCc---EEEE
Confidence 335 48999999 8888887777665552 4577888876432 1222 23334444555766 3321
Q ss_pred Ecc----------cC---CchH-----------HHHHHHHHHcCCcEEEEcccCC
Q 028129 160 LGE----------GS---SKPT-----------AIIGDVADELNLDLVIISMEAI 190 (213)
Q Consensus 160 v~~----------G~---~~p~-----------~~Il~~A~e~~aDLIVmG~~g~ 190 (213)
-.. |. ..+. ..+.++++++++|.|+.|.|..
T Consensus 104 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~K~~~l~~~~~~~~~~~i~~G~r~d 158 (215)
T 1sur_A 104 RATESAAWQEARYGKLWEQGVEGIEKYNDINKVEPMNRALKELNAQTWFAGLRRE 158 (215)
T ss_dssp ECSSCHHHHHHHHCCGGGSHHHHHHHHHHHHTHHHHHHHHHHTTEEEEECCCCTT
T ss_pred eCCCCHHHHHHhcCCCCCCCccHHHHHHHHHHHHHHHHHHHhcCCceEEEEeehh
Confidence 110 10 0001 1344577888889999998753
No 185
>2bon_A Lipid kinase; DAG kinase, transferase; 1.90A {Escherichia coli} SCOP: e.52.1.2 PDB: 2jgr_A 2p1r_A
Probab=47.98 E-value=79 Score=26.42 Aligned_cols=36 Identities=22% Similarity=0.288 Sum_probs=16.3
Q ss_pred cCCCcEEEEeeCCCCCCCHHHHHHHHHHHHHHhhcCCEEEE
Q 028129 81 TNFKHLLLPITDQNPYLSEGTRQAAATTAALAKKYGADITV 121 (213)
Q Consensus 81 ~~~k~ILV~vD~~~~~~S~~s~~Al~~A~~LA~~~~a~L~l 121 (213)
..+++++|-+++. +... +.++......+..+.++.+
T Consensus 27 ~~~~~~~vi~Np~----sg~~-~~~~~i~~~l~~~g~~~~~ 62 (332)
T 2bon_A 27 AEFPASLLILNGK----STDN-LPLREAIMLLREEGMTIHV 62 (332)
T ss_dssp ---CCEEEEECSS----STTC-HHHHHHHHHHHTTTCCEEE
T ss_pred hhcceEEEEECCC----CCCC-chHHHHHHHHHHcCCcEEE
Confidence 3467777777752 2211 3344444444444555443
No 186
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=47.73 E-value=95 Score=23.99 Aligned_cols=78 Identities=10% Similarity=0.064 Sum_probs=38.3
Q ss_pred CHHHHHHHHHHHHHHhhcCCEEEEEEEeCCCCCChhhHHHHHHHHHHHHHhCCCCceeEEEEEcccCCc-hHHHHHHHHH
Q 028129 98 SEGTRQAAATTAALAKKYGADITVVVIDERQKESLPEHENRLSSIRWHLSEGGFQEFRLLERLGEGSSK-PTAIIGDVAD 176 (213)
Q Consensus 98 S~~s~~Al~~A~~LA~~~~a~L~ll~V~~~~~~~~~~~~~~l~~~~~~l~~~g~~~~~v~~~v~~G~~~-p~~~Il~~A~ 176 (213)
++.-...++...+.+++.|-++.++.... +.+... ...+.+...++. -.... +. + .....++.+.
T Consensus 14 ~~~~~~~~~gi~~~a~~~g~~~~~~~~~~-------~~~~~~-~~~~~l~~~~vd---giIi~--~~-~~~~~~~~~~~~ 79 (272)
T 3o74_A 14 NPSYARIAKQLEQGARARGYQLLIASSDD-------QPDSER-QLQQLFRARRCD---ALFVA--SC-LPPEDDSYRELQ 79 (272)
T ss_dssp CHHHHHHHHHHHHHHHHTTCEEEEEECTT-------CHHHHH-HHHHHHHHTTCS---EEEEC--CC-CCSSCCHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHCCCEEEEEeCCC-------CHHHHH-HHHHHHHHcCCC---EEEEe--cC-ccccHHHHHHHH
Confidence 44455556666666777777666553221 111111 222234444555 22111 21 1 1244556666
Q ss_pred HcCCcEEEEcccC
Q 028129 177 ELNLDLVIISMEA 189 (213)
Q Consensus 177 e~~aDLIVmG~~g 189 (213)
+.++-+|+++...
T Consensus 80 ~~~iPvV~~~~~~ 92 (272)
T 3o74_A 80 DKGLPVIAIDRRL 92 (272)
T ss_dssp HTTCCEEEESSCC
T ss_pred HcCCCEEEEccCC
Confidence 6778888887653
No 187
>1jq5_A Glycerol dehydrogenase; oxidoreductase, NAD, glycerol metabolism; HET: NAD; 1.70A {Geobacillus stearothermophilus} SCOP: e.22.1.2 PDB: 1jpu_A* 1jqa_A*
Probab=47.59 E-value=48 Score=28.26 Aligned_cols=10 Identities=20% Similarity=0.378 Sum_probs=6.1
Q ss_pred CCcEEEEccc
Q 028129 179 NLDLVIISME 188 (213)
Q Consensus 179 ~aDLIVmG~~ 188 (213)
+..+|.+-+-
T Consensus 110 ~~p~i~IPTT 119 (370)
T 1jq5_A 110 DAYIVIVPTA 119 (370)
T ss_dssp TCEEEEEESS
T ss_pred CCCEEEeccc
Confidence 5666666554
No 188
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=47.50 E-value=41 Score=24.50 Aligned_cols=41 Identities=17% Similarity=0.206 Sum_probs=29.7
Q ss_pred HHHHHhCCCCceeEEEEEcccCCchHHHHHHHHHHcCCcEEEEcccC
Q 028129 143 RWHLSEGGFQEFRLLERLGEGSSKPTAIIGDVADELNLDLVIISMEA 189 (213)
Q Consensus 143 ~~~l~~~g~~~~~v~~~v~~G~~~p~~~Il~~A~e~~aDLIVmG~~g 189 (213)
...+...|++ +...- .. -|.+.|++.++++++|+|.+....
T Consensus 24 ~~~l~~~G~~---Vi~lG-~~--~p~e~~v~~a~~~~~d~v~lS~~~ 64 (137)
T 1ccw_A 24 DHAFTNAGFN---VVNIG-VL--SPQELFIKAAIETKADAILVSSLY 64 (137)
T ss_dssp HHHHHHTTCE---EEEEE-EE--ECHHHHHHHHHHHTCSEEEEEECS
T ss_pred HHHHHHCCCE---EEECC-CC--CCHHHHHHHHHhcCCCEEEEEecC
Confidence 3457778888 55321 11 488999999999999999998754
No 189
>2j4d_A Cryptochrome 3, cryptochrome DASH; DNA-binding protein, flavoprotein, FAD, mitochondrion, plastid, chromophore, chloroplast; HET: FAD MHF; 1.9A {Arabidopsis thaliana} PDB: 2vtb_A* 2ijg_X* 2vtb_B*
Probab=47.41 E-value=1e+02 Score=27.75 Aligned_cols=80 Identities=19% Similarity=0.133 Sum_probs=51.4
Q ss_pred CCHHHHHHHHHHHHHHhhcCCEEEEEEEeCCCCC-----------Chh---hHHHHHHHHHHHHHhCCCCceeEEEEEcc
Q 028129 97 LSEGTRQAAATTAALAKKYGADITVVVIDERQKE-----------SLP---EHENRLSSIRWHLSEGGFQEFRLLERLGE 162 (213)
Q Consensus 97 ~S~~s~~Al~~A~~LA~~~~a~L~ll~V~~~~~~-----------~~~---~~~~~l~~~~~~l~~~g~~~~~v~~~v~~ 162 (213)
.--....||..|++. +..+.+|.+.++... +.. -.-+.|.++.+.+.+.|.. +.. ..
T Consensus 50 LRl~DN~AL~~A~~~----~~~v~~vfi~dp~~~~~~~~~~~~~~~~~r~~Fl~~sL~~L~~~L~~~G~~---L~v--~~ 120 (525)
T 2j4d_A 50 LRVLDNDALYKAWSS----SDTILPVYCLDPRLFHTTHFFNFPKTGALRGGFLMECLVDLRKNLMKRGLN---LLI--RS 120 (525)
T ss_dssp CCSTTCHHHHHHHHT----CSEEEEEEEECGGGGSBCTTTCCBSSCHHHHHHHHHHHHHHHHHHHHTTCC---CEE--EE
T ss_pred cCcchhHHHHHHHhc----CCcEEEEEEECchhhcccccccCCCCCHHHHHHHHHHHHHHHHHHHHcCCe---EEE--Ee
Confidence 444455677766542 346777766543211 111 1234456666778888887 543 44
Q ss_pred cCCchHHHHHHHHHHcCCcEEEEcc
Q 028129 163 GSSKPTAIIGDVADELNLDLVIISM 187 (213)
Q Consensus 163 G~~~p~~~Il~~A~e~~aDLIVmG~ 187 (213)
|+ +.+.|.+++++.+++.|+.-.
T Consensus 121 g~--~~~~l~~l~~~~~~~~V~~~~ 143 (525)
T 2j4d_A 121 GK--PEEILPSLAKDFGARTVFAHK 143 (525)
T ss_dssp SC--HHHHHHHHHHHHTCSEEEEEC
T ss_pred CC--HHHHHHHHHHHcCCCEEEEec
Confidence 86 999999999999999998854
No 190
>1efp_A ETF, protein (electron transfer flavoprotein); electron transport, glutaric acidemia type II; HET: FAD AMP; 2.60A {Paracoccus denitrificans} SCOP: c.26.2.3 c.31.1.2
Probab=47.36 E-value=82 Score=26.50 Aligned_cols=106 Identities=20% Similarity=0.142 Sum_probs=55.4
Q ss_pred EEEEeeCCCCCCC-HHHHHHHHHHHHHHhhcCCEEEEEEEeCCCCCChhhHHHHHHHHHHHHHhCCCCc-eeEEEEEccc
Q 028129 86 LLLPITDQNPYLS-EGTRQAAATTAALAKKYGADITVVVIDERQKESLPEHENRLSSIRWHLSEGGFQE-FRLLERLGEG 163 (213)
Q Consensus 86 ILV~vD~~~~~~S-~~s~~Al~~A~~LA~~~~a~L~ll~V~~~~~~~~~~~~~~l~~~~~~l~~~g~~~-~~v~~~v~~G 163 (213)
|||-.+.++...+ +.+.+++..|.+| + +++++.+.... ++ .+.+.....|.+. |.+......+
T Consensus 2 ilv~~e~~~g~l~~~~~~eal~aA~~L----g-~V~av~~G~~~-------~~---~~~~~a~a~GaDkv~~v~d~~l~~ 66 (307)
T 1efp_A 2 VLLLGEVTNGALNRDATAKAVAAVKAL----G-DVTVLCAGASA-------KA---AAEEAAKIAGVAKVLVAEDALYGH 66 (307)
T ss_dssp EEEECCBSSSCBCHHHHHHHHHHHGGG----S-CEEEEEEETTC-------HH---HHHHHHTSTTEEEEEEEECGGGTT
T ss_pred EEEEEeccCCEeCchhhHHHHHHHHHh----C-CEEEEEECCch-------HH---HHHHHHHhcCCCEEEEecCchhcc
Confidence 5565664444566 8889999988877 3 78888777531 11 1122333446552 1111100111
Q ss_pred C-CchHHHHHHHHHHcCCcEEEEcccCCCCCCchHHHHHhcCCCcEE
Q 028129 164 S-SKPTAIIGDVADELNLDLVIISMEAIHSKHVDANLLAEFIPCPVL 209 (213)
Q Consensus 164 ~-~~p~~~Il~~A~e~~aDLIVmG~~g~~~~Gs~~~~vl~~a~cPVL 209 (213)
. ..+...++..+ +.++|+|++|+... ++...-.++.+...|.+
T Consensus 67 ~~~~~~a~~La~~-~~~pd~VL~g~ts~--G~~laprlAa~L~~~~v 110 (307)
T 1efp_A 67 RLAEPTAALIVGL-AGDYSHIAAPATTD--AKNVMPRVAALLDVMVL 110 (307)
T ss_dssp CCHHHHHHHHHHH-HTTCSEEEEESSHH--HHHHHHHHHHHTTCCEE
T ss_pred CCHHHHHHHHHHH-ccCCCEEEEeCCcc--hhhHHHHHHHHhCCCcc
Confidence 1 01223333334 66899999999643 33344445555555543
No 191
>3l52_A Orotidine 5'-phosphate decarboxylase; TIM barrel, structural genomics, PSI-2, protein structure initiative; 1.35A {Streptomyces avermitilis} PDB: 3v75_A*
Probab=47.30 E-value=52 Score=27.55 Aligned_cols=100 Identities=14% Similarity=0.095 Sum_probs=60.4
Q ss_pred CcEEEEeeCCCC-----CCCHHHHHHHHHHHHHHhhcCCEEEEEEEeCCCCCCh-hhHHHHHHHHHHHHHhCCCCceeEE
Q 028129 84 KHLLLPITDQNP-----YLSEGTRQAAATTAALAKKYGADITVVVIDERQKESL-PEHENRLSSIRWHLSEGGFQEFRLL 157 (213)
Q Consensus 84 k~ILV~vD~~~~-----~~S~~s~~Al~~A~~LA~~~~a~L~ll~V~~~~~~~~-~~~~~~l~~~~~~l~~~g~~~~~v~ 157 (213)
.++.|.+|++.. ......+...+++..++...+..+..+-+.-..+... .+.-..++++.+.+.+.|+. +.
T Consensus 23 ~~LcvglDp~~~~lp~~~l~~~~~~~~~~~~~ivd~l~~~v~~~Kvg~~lf~~~G~~G~~~l~~~i~~l~~~g~~---Vf 99 (284)
T 3l52_A 23 GPLCVGIDPHASLLADWGLSDDVAGLERFSRTVVEALGEHVAVFKPQSAFFERFGSRGVAVLEKTVAEARAAGAL---VV 99 (284)
T ss_dssp CSCEEEECCCHHHHHHTTCCSSHHHHHHHHHHHHHHHTTTCSEEEEBHHHHHTTHHHHHHHHHHHHHHHHHTTCE---EE
T ss_pred CCeEEEECCChhhccccccccchHHHHHHHHHHHHHhCCcceEEEeeHHHHHhcCHHHHHHHHHHHHHHHHCCCc---EE
Confidence 357888885210 1223355677889999988876655553322111111 23334566666666677776 66
Q ss_pred EEEcccCCchHHHHHHHHHH-------cCCcEEEEccc
Q 028129 158 ERLGEGSSKPTAIIGDVADE-------LNLDLVIISME 188 (213)
Q Consensus 158 ~~v~~G~~~p~~~Il~~A~e-------~~aDLIVmG~~ 188 (213)
.-...|+ .......|++. +++|+|.+-..
T Consensus 100 lDlK~~D--IpnTv~~ya~~~~~~~~~lg~D~vTvh~~ 135 (284)
T 3l52_A 100 MDAKRGD--IGSTMAAYAEAFLRKDSPLFSDALTVSPY 135 (284)
T ss_dssp EEEEECC--CHHHHHHHHHHHSSTTSTTCCSEEEECCT
T ss_pred EEecccC--cHHHHHHHHHHHhccccccCCcEEEEecc
Confidence 6666675 77777777754 56899988443
No 192
>3zqu_A Probable aromatic acid decarboxylase; lyase; HET: FNR; 1.50A {Pseudomonas aeruginosa} SCOP: c.34.1.0
Probab=46.82 E-value=26 Score=28.06 Aligned_cols=38 Identities=11% Similarity=0.221 Sum_probs=31.1
Q ss_pred cCCCcEEEEeeCCCCCCCHHHHHHHHHHHHHHhhcCCEEEEEEE
Q 028129 81 TNFKHLLLPITDQNPYLSEGTRQAAATTAALAKKYGADITVVVI 124 (213)
Q Consensus 81 ~~~k~ILV~vD~~~~~~S~~s~~Al~~A~~LA~~~~a~L~ll~V 124 (213)
...|+|++++. |+-.+.++++....|.+. |.+++++.-
T Consensus 2 ~~~k~IllgvT-----Gaiaa~k~~~ll~~L~~~-g~eV~vv~T 39 (209)
T 3zqu_A 2 SGPERITLAMT-----GASGAQYGLRLLDCLVQE-EREVHFLIS 39 (209)
T ss_dssp CSCSEEEEEEC-----SSSCHHHHHHHHHHHHHT-TCEEEEEEC
T ss_pred CCCCEEEEEEE-----CHHHHHHHHHHHHHHHHC-CCEEEEEEC
Confidence 34589999999 899999999988888664 889888754
No 193
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=46.24 E-value=78 Score=25.04 Aligned_cols=20 Identities=15% Similarity=-0.009 Sum_probs=12.9
Q ss_pred HHHHHHHHHcCCcEEEEccc
Q 028129 169 AIIGDVADELNLDLVIISME 188 (213)
Q Consensus 169 ~~Il~~A~e~~aDLIVmG~~ 188 (213)
...++.+.+.++=+|+++..
T Consensus 79 ~~~~~~l~~~~iPvV~i~~~ 98 (288)
T 3gv0_A 79 DPRVRFMTERNMPFVTHGRS 98 (288)
T ss_dssp CHHHHHHHHTTCCEEEESCC
T ss_pred cHHHHHHhhCCCCEEEECCc
Confidence 34556666667777777764
No 194
>1ta9_A Glycerol dehydrogenase; oxidoredu; 1.90A {Schizosaccharomyces pombe}
Probab=45.94 E-value=59 Score=28.85 Aligned_cols=67 Identities=15% Similarity=0.214 Sum_probs=33.4
Q ss_pred HHHHHHHHHHhCCCCceeEEEEEcccCCchH---HHHHHHHHHcCCcEEE-EcccCCCCCCchHHHHHhcCCCcEEEEc
Q 028129 138 RLSSIRWHLSEGGFQEFRLLERLGEGSSKPT---AIIGDVADELNLDLVI-ISMEAIHSKHVDANLLAEFIPCPVLLLP 212 (213)
Q Consensus 138 ~l~~~~~~l~~~g~~~~~v~~~v~~G~~~p~---~~Il~~A~e~~aDLIV-mG~~g~~~~Gs~~~~vl~~a~cPVLvVp 212 (213)
..+.+...+.+.|++ +...+..|+ .+. +.+.+.+++ ++|+|| +|.-. ..-..-+++....+|++.||
T Consensus 106 ~~~~v~~~L~~~gi~---~~~~~~~ge-~~~~~v~~~~~~~~~-~~D~IIAvGGGS---viD~AK~iA~~~giP~I~IP 176 (450)
T 1ta9_A 106 CANKIVDSLSQNGMT---VTKLVFGGE-ASLVELDKLRKQCPD-DTQVIIGVGGGK---TMDSAKYIAHSMNLPSIICP 176 (450)
T ss_dssp THHHHHHHHHHTTCE---EEEEEECSC-CCHHHHHHHHTTSCT-TCCEEEEEESHH---HHHHHHHHHHHTTCCEEEEE
T ss_pred HHHHHHHHHHHCCCe---EEEEeeCCC-CCHHHHHHHHHHHhh-CCCEEEEeCCcH---HHHHHHHHHHhcCCCEEEEe
Confidence 345555666667776 432334454 222 333444455 788877 44311 11122233344567777776
No 195
>3tvs_A Cryptochrome-1; circadian clock light entrainment, jetlag, phosphorylation, gene regulation, signaling protein; HET: TPO FAD; 2.30A {Drosophila melanogaster} PDB: 4gu5_A*
Probab=45.58 E-value=28 Score=31.80 Aligned_cols=79 Identities=20% Similarity=0.195 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHhhcCCEEEEEEEeCCCCCC---h-h----hHHHHHHHHHHHHHhC---CCCceeEEEEEcccCCchHH
Q 028129 101 TRQAAATTAALAKKYGADITVVVIDERQKES---L-P----EHENRLSSIRWHLSEG---GFQEFRLLERLGEGSSKPTA 169 (213)
Q Consensus 101 s~~Al~~A~~LA~~~~a~L~ll~V~~~~~~~---~-~----~~~~~l~~~~~~l~~~---g~~~~~v~~~v~~G~~~p~~ 169 (213)
...||..|+..+. .|..|..|.|.++.... . . -..+.|.++...+.+. |.. .. +..|+ +.+
T Consensus 18 DN~AL~~A~~~~~-~g~~vl~vfi~dp~~~~~~~~~~~r~~Fl~~sL~~L~~~L~~~~~~G~~---L~--v~~G~--~~~ 89 (538)
T 3tvs_A 18 DNPALLAALADKD-QGIALIPVFIFDGESAGTKNVGYNRMRFLLDSLQDIDDQLQAATDGRGR---LL--VFEGE--PAY 89 (538)
T ss_dssp SCHHHHTTTGGGT-TTCBCCEEEEECSSSSCSTTCCHHHHHHHHHHHHHHHHHGGGSCSSSSC---CE--EEESC--HHH
T ss_pred hhHHHHHHHHhCC-CCCCEEEEEecChhhhccCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCe---EE--EEeCC--HHH
Confidence 4466766655443 34467777666543321 1 1 1223455566667777 776 43 34586 999
Q ss_pred HHHHHHHHcCCcEEEEcc
Q 028129 170 IIGDVADELNLDLVIISM 187 (213)
Q Consensus 170 ~Il~~A~e~~aDLIVmG~ 187 (213)
.|.+++++.+++.|+.-.
T Consensus 90 vl~~L~~~~~a~~V~~n~ 107 (538)
T 3tvs_A 90 IFRRLHEQVRLHRICIEQ 107 (538)
T ss_dssp HHHHHHHHHCEEEECEEC
T ss_pred HHHHHHHHcCCCEEEEcc
Confidence 999999999999998643
No 196
>1w2w_B 5-methylthioribose-1-phosphate isomerase; EIF2B, methionine salvage pathway, translation initiation, oxidoreductase; 1.75A {Saccharomyces cerevisiae} SCOP: c.124.1.5
Probab=45.35 E-value=7.4 Score=30.81 Aligned_cols=59 Identities=5% Similarity=-0.008 Sum_probs=36.3
Q ss_pred HHHHHhCCCCceeEEEEEcccCCchHHHHHHHHHHcC--CcEEEEcccCCCCC-------CchHH-HHHhcCCCcEEEE
Q 028129 143 RWHLSEGGFQEFRLLERLGEGSSKPTAIIGDVADELN--LDLVIISMEAIHSK-------HVDAN-LLAEFIPCPVLLL 211 (213)
Q Consensus 143 ~~~l~~~g~~~~~v~~~v~~G~~~p~~~Il~~A~e~~--aDLIVmG~~g~~~~-------Gs~~~-~vl~~a~cPVLvV 211 (213)
.|.+.+.|++ +.... - .++..+.++.+ +|++++|++.-... |+-.. +++++-.+||+++
T Consensus 23 a~eL~~~gI~---vtlI~--D-----sa~~~~m~~~~~~Vd~VivGAd~v~~nG~v~nkiGT~~~Al~Ak~~~vPf~V~ 91 (191)
T 1w2w_B 23 AYELVYDKIP---STLIT--D-----SSIAYRIRTSPIPIKAAFVGADRIVRNGDTANKIGTLQLAVICKQFGIKFFVV 91 (191)
T ss_dssp HHHHHHHTCC---BEEBC--G-----GGHHHHHHHCSSCEEEEEECCSEECTTSCEEEETTHHHHHHHHHHHTCEEEEE
T ss_pred HHHHHHcCCC---EEEEe--c-----hHHHHHHHhCCCCCCEEEECccEEecCCCEEecccHHHHHHHHHHcCCCEEEe
Confidence 4567777988 54322 1 23333344555 99999999754323 33332 3478889999986
No 197
>3g40_A Na-K-CL cotransporter; alpha/beta fold 10-stranded twisted beta sheet, transport protein; 1.90A {Methanosarcina acetivorans}
Probab=44.87 E-value=27 Score=29.55 Aligned_cols=101 Identities=13% Similarity=0.026 Sum_probs=52.6
Q ss_pred hhhcCCCcEEEEeeCCCCC----C-CHHHHHHHHHHHHHHhhcCCEEEEEEEeCCCCCChhhHHHHHHHHHHHHHhCCCC
Q 028129 78 EAFTNFKHLLLPITDQNPY----L-SEGTRQAAATTAALAKKYGADITVVVIDERQKESLPEHENRLSSIRWHLSEGGFQ 152 (213)
Q Consensus 78 ~~~~~~k~ILV~vD~~~~~----~-S~~s~~Al~~A~~LA~~~~a~L~ll~V~~~~~~~~~~~~~~l~~~~~~l~~~g~~ 152 (213)
..+...++|=|=+.+.+|+ + .....-++-.|..|.+..++++.+..+.+.+. .....+..++++.+.+ .-+.+
T Consensus 150 ~~fg~~~~IdvW~~~~~~~W~~g~~~~Ng~LmlllAylL~~nW~A~I~L~~vV~de~-a~~~a~~~l~~Lv~~~-Ri~a~ 227 (294)
T 3g40_A 150 AGLGRQNLINLWIENRGLDWDISMELGNMDLALLIAYKLKSNWKASLSFMTFAPTAI-QAQAAENFLQSLAELA-RIPNV 227 (294)
T ss_dssp TTTTTSCEEEEECCCC---CCCCSCCCTTHHHHHHHHHHHHHHTCEEEEEEECSSHH-HHHHHHHHHHHHHHHH-TCCSC
T ss_pred cCCCCCceEEEecCCCCCcccccccccchhHHHHHHHHHhhCcCCeEEEEEecCCHH-HHHHHHHHHHHHHHHh-cCCce
Confidence 3455667776663321100 1 12333455566666667799999996544220 1112333444443322 23444
Q ss_pred ceeEEEEEcccCCchHHHHHHHHHHcCCcEEEEcccCC
Q 028129 153 EFRLLERLGEGSSKPTAIIGDVADELNLDLVIISMEAI 190 (213)
Q Consensus 153 ~~~v~~~v~~G~~~p~~~Il~~A~e~~aDLIVmG~~g~ 190 (213)
.. .+. + +..+|+..+ -++||+++|....
T Consensus 228 ---~~-vv~-~---~F~~il~~s--~~ADL~flGl~~~ 255 (294)
T 3g40_A 228 ---KM-QVL-R---ENPIKSSKL--PFASLHIFSLDPN 255 (294)
T ss_dssp ---EE-EEE-S---SCTTTSSSC--CCCSEEEEECCSS
T ss_pred ---EE-Eec-C---chHHHHhhC--cCCCEEEEcCCCC
Confidence 22 222 4 555666555 5699999999654
No 198
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=44.18 E-value=46 Score=25.06 Aligned_cols=41 Identities=17% Similarity=0.293 Sum_probs=30.3
Q ss_pred HHHHHhCCCCceeEEEEEcccCCchHHHHHHHHHHcCCcEEEEcccC
Q 028129 143 RWHLSEGGFQEFRLLERLGEGSSKPTAIIGDVADELNLDLVIISMEA 189 (213)
Q Consensus 143 ~~~l~~~g~~~~~v~~~v~~G~~~p~~~Il~~A~e~~aDLIVmG~~g 189 (213)
...+...|++ +.. + |..-|.+.|++.++++++|+|.+....
T Consensus 39 a~~l~~~G~e---Vi~-l--G~~~p~e~lv~aa~~~~~diV~lS~~~ 79 (161)
T 2yxb_A 39 ARALRDAGFE---VVY-T--GLRQTPEQVAMAAVQEDVDVIGVSILN 79 (161)
T ss_dssp HHHHHHTTCE---EEC-C--CSBCCHHHHHHHHHHTTCSEEEEEESS
T ss_pred HHHHHHCCCE---EEE-C--CCCCCHHHHHHHHHhcCCCEEEEEeec
Confidence 3456778888 542 2 321488999999999999999998764
No 199
>2der_A TRNA-specific 2-thiouridylase MNMA; protein-RNA complex, transferase/RNA complex; 3.10A {Escherichia coli} PDB: 2det_A 2deu_A*
Probab=43.90 E-value=1.1e+02 Score=26.35 Aligned_cols=98 Identities=11% Similarity=0.111 Sum_probs=53.8
Q ss_pred CCcEEEEeeCCCCCCCHHHHHHHHHHHHHHhhcCCEEEEEEEeCCCCCChh---hHHHHHHHHHHHHHhCCCCceeEEEE
Q 028129 83 FKHLLLPITDQNPYLSEGTRQAAATTAALAKKYGADITVVVIDERQKESLP---EHENRLSSIRWHLSEGGFQEFRLLER 159 (213)
Q Consensus 83 ~k~ILV~vD~~~~~~S~~s~~Al~~A~~LA~~~~a~L~ll~V~~~~~~~~~---~~~~~l~~~~~~l~~~g~~~~~v~~~ 159 (213)
-++|+|++. |...|.-++.. +++.|-++..+++........+ ......+.+++..+..|++-+-+...
T Consensus 17 ~~kVvVa~S-----GGvDSsv~a~l----L~~~G~~V~~v~~~~~~~~~~~~~~~s~~d~~~a~~va~~LGIp~~vvd~~ 87 (380)
T 2der_A 17 AKKVIVGMS-----GGVDSSVSAWL----LQQQGYQVEGLFMKNWEEDDGEEYCTAAADLADAQAVCDKLGIELHTVNFA 87 (380)
T ss_dssp CCEEEEECC-----SCSTTHHHHHH----HHTTCCEEEEEEEECCCCCSHHHHHHHHHHHHHHHHHHHHHTCCEEEEECH
T ss_pred CCEEEEEEE-----ChHHHHHHHHH----HHHcCCeEEEEEEEcCccccccCCCCCHHHHHHHHHHHHHcCCcEEEEeCc
Confidence 468999999 66666544443 3445778888888754322100 11223444454555557762111110
Q ss_pred --------------EcccCC-ch---------HHHHHHHHHH-cCCcEEEEcccC
Q 028129 160 --------------LGEGSS-KP---------TAIIGDVADE-LNLDLVIISMEA 189 (213)
Q Consensus 160 --------------v~~G~~-~p---------~~~Il~~A~e-~~aDLIVmG~~g 189 (213)
...|.+ +| ...+.++|++ +++|.|+.|++.
T Consensus 88 ~~f~~~v~~~~~~ey~~G~tpnpc~~Cnr~ik~~~l~~~A~~~~Gad~IatGH~a 142 (380)
T 2der_A 88 AEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADYIATGHYV 142 (380)
T ss_dssp HHHHHHTHHHHHHHHHTTCCCCHHHHHHHHTTTTHHHHHHHHTTCCSEEECCCSC
T ss_pred HHHHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHHHHHHHhhcCCCEEEEcccc
Confidence 001210 01 2456788888 999999999854
No 200
>2d1p_B TUSC, hypothetical UPF0116 protein YHEM; tRNA modification, sulfur transfer, structural genomics, translation; 2.15A {Escherichia coli} SCOP: c.114.1.1
Probab=43.80 E-value=44 Score=23.65 Aligned_cols=42 Identities=17% Similarity=0.249 Sum_probs=31.1
Q ss_pred CCcEEEEeeCCCCCCCHHHHHHHHHHHHHHhhcCCEEEEEEEeC
Q 028129 83 FKHLLLPITDQNPYLSEGTRQAAATTAALAKKYGADITVVVIDE 126 (213)
Q Consensus 83 ~k~ILV~vD~~~~~~S~~s~~Al~~A~~LA~~~~a~L~ll~V~~ 126 (213)
+|++++-+. ..||+++.+..++++|..++.. +-++.++-..+
T Consensus 1 Mkk~~~vv~-~~P~g~~~~~~al~~a~a~~a~-~~~v~vff~~D 42 (119)
T 2d1p_B 1 MKRIAFVFS-TAPHGTAAGREGLDALLATSAL-TDDLAVFFIAD 42 (119)
T ss_dssp CCCEEEEEC-SCTTTSTHHHHHHHHHHHHHTT-CSCEEEEECGG
T ss_pred CcEEEEEEc-CCCCCcHHHHHHHHHHHHHHhC-CCCEEEEEehH
Confidence 467788777 3588999999999999887643 45777775543
No 201
>2wsi_A FAD synthetase; transferase, nucleotidyltransferase, nucleotide-binding; HET: FAD; 1.90A {Saccharomyces cerevisiae}
Probab=43.71 E-value=1.4e+02 Score=24.81 Aligned_cols=93 Identities=11% Similarity=0.092 Sum_probs=55.2
Q ss_pred CcEEEEeeCCCCCCCHHHHHHHHHHHHHHhh------------------cCCEEEEEEEeCCCCCChhhHHHHHHHHHHH
Q 028129 84 KHLLLPITDQNPYLSEGTRQAAATTAALAKK------------------YGADITVVVIDERQKESLPEHENRLSSIRWH 145 (213)
Q Consensus 84 k~ILV~vD~~~~~~S~~s~~Al~~A~~LA~~------------------~~a~L~ll~V~~~~~~~~~~~~~~l~~~~~~ 145 (213)
.+|+|++. |...+.-.+..+...... .+.++.+++++... .+++..+..+++
T Consensus 54 ~~i~vafS-----GGKDS~VLL~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~vv~iDtg~--~fpet~~fv~~~--- 123 (306)
T 2wsi_A 54 GEISFSYN-----GGKDCQVLLLLYLSCLWEYFFIKAQNSQFDFEFQSFPMQRLPTVFIDQEE--TFPTLENFVLET--- 123 (306)
T ss_dssp SSEEEECC-----SCHHHHHHHHHHHHHHHHHHHHHHHHC--------CCCCCEEEEECCCTT--CCHHHHHHHHHH---
T ss_pred CCEEEEec-----CCHHHHHHHHHHHHHHhhhcccccccccccccccccCCCCeeEEEEeCCC--CCHHHHHHHHHH---
Confidence 37999999 888888888877765321 13567788887542 233333333333
Q ss_pred HHhCCCCceeEEEEEcc---cCCchHHHHHHHHHHc-CCcEEEEcccCC
Q 028129 146 LSEGGFQEFRLLERLGE---GSSKPTAIIGDVADEL-NLDLVIISMEAI 190 (213)
Q Consensus 146 l~~~g~~~~~v~~~v~~---G~~~p~~~Il~~A~e~-~aDLIVmG~~g~ 190 (213)
.++.|++ +...... +. ...+.+.++.+.. ..+.|++|.|..
T Consensus 124 ~~~ygl~---l~v~~~~~~~~~-~l~~~~~~~~k~~p~~~aii~G~Rrd 168 (306)
T 2wsi_A 124 SERYCLS---LYESQRQSGASV-NMADAFRDFIKIYPETEAIVIGIRHT 168 (306)
T ss_dssp HHHTTEE---EEECCC-----C-CHHHHHHHHHHHCTTCCEEECCCCCC
T ss_pred HHHcCCC---EEEEeCCccccc-cHHHHHHHHHhhCCCCcEEEEEEecc
Confidence 3344554 3211100 11 2556777777764 679999999864
No 202
>2ejb_A Probable aromatic acid decarboxylase; phenylacrylic acid decarboxylase, X-RAY diffraction, structural genomics, NPPSFA; 2.15A {Aquifex aeolicus}
Probab=42.42 E-value=36 Score=26.64 Aligned_cols=35 Identities=17% Similarity=0.174 Sum_probs=28.7
Q ss_pred CcEEEEeeCCCCCCCHHHHHHHHHHHHHHhhcCCEEEEEEE
Q 028129 84 KHLLLPITDQNPYLSEGTRQAAATTAALAKKYGADITVVVI 124 (213)
Q Consensus 84 k~ILV~vD~~~~~~S~~s~~Al~~A~~LA~~~~a~L~ll~V 124 (213)
++|++++. |+-.+.++++....|.+. |.+++++.-
T Consensus 2 k~IllgvT-----Gs~aa~k~~~l~~~L~~~-g~~V~vv~T 36 (189)
T 2ejb_A 2 QKIALCIT-----GASGVIYGIKLLQVLEEL-DFSVDLVIS 36 (189)
T ss_dssp CEEEEEEC-----SSTTHHHHHHHHHHHHHT-TCEEEEEEC
T ss_pred CEEEEEEE-----CHHHHHHHHHHHHHHHHC-CCEEEEEEC
Confidence 79999999 888888888888888655 888887653
No 203
>2hy5_B Intracellular sulfur oxidation protein DSRF; DSRE, DSRF, sulfur, structural genomics, PSI, protein initiative, berkeley structural genomics center, BSGC, TRAN; 1.72A {Allochromatium vinosum} SCOP: c.114.1.1 PDB: 2hyb_B
Probab=42.41 E-value=52 Score=24.14 Aligned_cols=43 Identities=19% Similarity=0.196 Sum_probs=32.7
Q ss_pred CCCcEEEEeeCCCCCCCHHHHHHHHHHHHHHhhcCCEEEEEEEeC
Q 028129 82 NFKHLLLPITDQNPYLSEGTRQAAATTAALAKKYGADITVVVIDE 126 (213)
Q Consensus 82 ~~k~ILV~vD~~~~~~S~~s~~Al~~A~~LA~~~~a~L~ll~V~~ 126 (213)
.+|++++-+. ..||++..+..++++|..++.. +.++.++-..+
T Consensus 4 ~Mkk~~ivv~-~~P~g~~~~~~al~~a~a~~a~-~~~v~Vff~~D 46 (136)
T 2hy5_B 4 VVKKFMYLNR-KAPYGTIYAWEALEVVLIGAAF-DQDVCVLFLDD 46 (136)
T ss_dssp -CCEEEEEEC-SCTTTSSHHHHHHHHHHHHGGG-CCEEEEEECGG
T ss_pred chhEEEEEEe-CCCCCcHHHHHHHHHHHHHHhC-CCCEEEEEEhH
Confidence 3677888886 4688999999999999987754 56787775543
No 204
>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris}
Probab=42.25 E-value=47 Score=27.74 Aligned_cols=87 Identities=13% Similarity=0.088 Sum_probs=52.7
Q ss_pred CCCcEEEEeeCCCCCCCHHHHHHHHHHHHHHhhcCCEEEEEEEeCCCCCChhhHHHHHHHHHHHHHhCCCCceeEEEEEc
Q 028129 82 NFKHLLLPITDQNPYLSEGTRQAAATTAALAKKYGADITVVVIDERQKESLPEHENRLSSIRWHLSEGGFQEFRLLERLG 161 (213)
Q Consensus 82 ~~k~ILV~vD~~~~~~S~~s~~Al~~A~~LA~~~~a~L~ll~V~~~~~~~~~~~~~~l~~~~~~l~~~g~~~~~v~~~v~ 161 (213)
..++|+|-+. ++..+.+++-.+..- ...++++.++....+. + +....++.|++ +...-.
T Consensus 88 ~~~ri~vl~S-----g~g~nl~~ll~~~~~-g~l~~~i~~Visn~p~-----~-------~~~~A~~~gIp---~~~~~~ 146 (288)
T 3obi_A 88 TRRKVMLLVS-----QSDHCLADILYRWRV-GDLHMIPTAIVSNHPR-----E-------TFSGFDFGDIP---FYHFPV 146 (288)
T ss_dssp SCEEEEEEEC-----SCCHHHHHHHHHHHT-TSSCEEEEEEEESSCG-----G-------GSCCTTTTTCC---EEECCC
T ss_pred CCcEEEEEEc-----CCCCCHHHHHHHHHC-CCCCeEEEEEEcCCCh-----h-------HHHHHHHcCCC---EEEeCC
Confidence 3568988888 677777777666432 2345666665544411 1 11224556777 332111
Q ss_pred -ccCCc--hHHHHHHHHHHcCCcEEEEcccCC
Q 028129 162 -EGSSK--PTAIIGDVADELNLDLVIISMEAI 190 (213)
Q Consensus 162 -~G~~~--p~~~Il~~A~e~~aDLIVmG~~g~ 190 (213)
... + -.+++++..+++++|+||+...++
T Consensus 147 ~~~~-r~~~~~~~~~~l~~~~~Dlivlagy~~ 177 (288)
T 3obi_A 147 NKDT-RRQQEAAITALIAQTHTDLVVLARYMQ 177 (288)
T ss_dssp CTTT-HHHHHHHHHHHHHHHTCCEEEESSCCS
T ss_pred Cccc-HHHHHHHHHHHHHhcCCCEEEhhhhhh
Confidence 111 1 235789999999999999998765
No 205
>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida}
Probab=41.52 E-value=20 Score=30.10 Aligned_cols=88 Identities=7% Similarity=0.059 Sum_probs=53.6
Q ss_pred CCCcEEEEeeCCCCCCCHHHHHHHHHHHHHHhhcCCEEEEEEEeCCCCCChhhHHHHHHHHHHHHHhCCCCceeEEEEEc
Q 028129 82 NFKHLLLPITDQNPYLSEGTRQAAATTAALAKKYGADITVVVIDERQKESLPEHENRLSSIRWHLSEGGFQEFRLLERLG 161 (213)
Q Consensus 82 ~~k~ILV~vD~~~~~~S~~s~~Al~~A~~LA~~~~a~L~ll~V~~~~~~~~~~~~~~l~~~~~~l~~~g~~~~~v~~~v~ 161 (213)
..++|+|-+. ++..+.+++-.+..- ...++++.++....+. . +....++.|++ +...-.
T Consensus 87 ~~~ri~vl~S-----g~g~nl~~ll~~~~~-g~l~~~i~~Visn~~~------a------~~~~A~~~gIp---~~~~~~ 145 (287)
T 3nrb_A 87 DRKKVVIMVS-----KFDHCLGDLLYRHRL-GELDMEVVGIISNHPR------E------ALSVSLVGDIP---FHYLPV 145 (287)
T ss_dssp CCCEEEEEEC-----SCCHHHHHHHHHHHH-TSSCCEEEEEEESSCG------G------GCCCCCCTTSC---EEECCC
T ss_pred CCcEEEEEEe-----CCCcCHHHHHHHHHC-CCCCeEEEEEEeCChH------H------HHHHHHHcCCC---EEEEec
Confidence 3568988888 676777777666443 3346777776555432 0 11224456777 332111
Q ss_pred -ccC-CchHHHHHHHHHHcCCcEEEEcccCC
Q 028129 162 -EGS-SKPTAIIGDVADELNLDLVIISMEAI 190 (213)
Q Consensus 162 -~G~-~~p~~~Il~~A~e~~aDLIVmG~~g~ 190 (213)
... ..-.+++++..+++++|+||+...++
T Consensus 146 ~~~~r~~~~~~~~~~l~~~~~Dlivlagym~ 176 (287)
T 3nrb_A 146 TPATKAAQESQIKNIVTQSQADLIVLARYMQ 176 (287)
T ss_dssp CGGGHHHHHHHHHHHHHHHTCSEEEESSCCS
T ss_pred cCcchhhHHHHHHHHHHHhCCCEEEhhhhhh
Confidence 111 01235789999999999999998765
No 206
>3bl5_A Queuosine biosynthesis protein QUEC; PREQ1 biosynthesis, RNA modification, tRNA, hydrolase; 2.95A {Bacillus subtilis}
Probab=41.05 E-value=1.2e+02 Score=23.13 Aligned_cols=92 Identities=9% Similarity=0.060 Sum_probs=51.1
Q ss_pred CcEEEEeeCCCCCCCHHHHHHHHHHHHHHhhcCCEEEEEEEeCCCCCChhhHHHHHHHHHHHHHhCCCCceeEEEE----
Q 028129 84 KHLLLPITDQNPYLSEGTRQAAATTAALAKKYGADITVVVIDERQKESLPEHENRLSSIRWHLSEGGFQEFRLLER---- 159 (213)
Q Consensus 84 k~ILV~vD~~~~~~S~~s~~Al~~A~~LA~~~~a~L~ll~V~~~~~~~~~~~~~~l~~~~~~l~~~g~~~~~v~~~---- 159 (213)
++|+|++. |..+|.-++..+.. .+.++..++++...... . ..+.++...+..|++-+.+...
T Consensus 4 ~~v~v~lS-----GG~DS~~ll~ll~~----~~~~v~~~~~~~~~~~~-~----e~~~a~~~a~~lgi~~~~~~~~~~~~ 69 (219)
T 3bl5_A 4 EKAIVVFS-----GGQDSTTCLLWALK----EFEEVETVTFHYNQRHS-Q----EVEVAKSIAEKLGVKNHLLDMSLLNQ 69 (219)
T ss_dssp CEEEEECC-----SSHHHHHHHHHHHH----HCSEEEEEEEESSCTTC-H----HHHHHHHHHHTTCCCEEEEECGGGGG
T ss_pred CCEEEEcc-----CcHHHHHHHHHHHH----cCCceEEEEEeCCCCCH-H----HHHHHHHHHHHhCCCeEEEeChHHhh
Confidence 57999999 77777766665543 24678888887654321 1 1233333444445541101000
Q ss_pred ----------Ec----ccCCc----------hH-HHHHHHHHHcCCcEEEEcccCC
Q 028129 160 ----------LG----EGSSK----------PT-AIIGDVADELNLDLVIISMEAI 190 (213)
Q Consensus 160 ----------v~----~G~~~----------p~-~~Il~~A~e~~aDLIVmG~~g~ 190 (213)
+. .+. . .. ..+.++|++++++.|+.|++..
T Consensus 70 ~~~~~l~~~~~~~~~~~~~-~~~~~~~~r~~~~~~~~~~~a~~~g~~~i~tG~~~d 124 (219)
T 3bl5_A 70 LAPNALTRNDIEIEVKDGE-LPSTFVPGRNLVFLSFASILAYQIGARHIITGVCET 124 (219)
T ss_dssp GSTGGGC---------------CCCCTTHHHHHHHHHHHHHHHHTCSEEECCCCC-
T ss_pred hcccccccccccccccccC-CCCceeechHHHHHHHHHHHHHHcCCCEEEEecccc
Confidence 00 011 0 12 2346889999999999999764
No 207
>2iks_A DNA-binding transcriptional dual regulator; escherichia coli structural genomics, PSI-2, protein structure initiative; 1.85A {Escherichia coli}
Probab=40.69 E-value=1.3e+02 Score=23.63 Aligned_cols=17 Identities=6% Similarity=-0.070 Sum_probs=8.1
Q ss_pred HHHHHHHcCCcEEEEcc
Q 028129 171 IGDVADELNLDLVIISM 187 (213)
Q Consensus 171 Il~~A~e~~aDLIVmG~ 187 (213)
+++.+++.++-+|+++.
T Consensus 92 ~~~~~~~~~iPvV~~~~ 108 (293)
T 2iks_A 92 FYQRWANDPFPIVALDR 108 (293)
T ss_dssp HHHTTTTSSSCEEEEES
T ss_pred HHHHHHhCCCCEEEECC
Confidence 33444444555555554
No 208
>3cu5_A Two component transcriptional regulator, ARAC FAM; structural genomics, protein structure initiative; 2.60A {Clostridium phytofermentans isdg}
Probab=40.62 E-value=89 Score=21.63 Aligned_cols=19 Identities=5% Similarity=0.018 Sum_probs=10.5
Q ss_pred HHHHHHHHcCCcEEEEccc
Q 028129 170 IIGDVADELNLDLVIISME 188 (213)
Q Consensus 170 ~Il~~A~e~~aDLIVmG~~ 188 (213)
+.++..++..+|+|++...
T Consensus 40 ~al~~~~~~~~dlvllD~~ 58 (141)
T 3cu5_A 40 NAIQIALKHPPNVLLTDVR 58 (141)
T ss_dssp HHHHHHTTSCCSEEEEESC
T ss_pred HHHHHHhcCCCCEEEEeCC
Confidence 3444455556666666554
No 209
>1jx7_A Hypothetical protein YCHN; NEW fold, hexamer, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; 2.80A {Escherichia coli} SCOP: c.114.1.1
Probab=40.45 E-value=67 Score=21.92 Aligned_cols=42 Identities=17% Similarity=0.318 Sum_probs=29.6
Q ss_pred CcEEEEeeCCCCCCCHHHHHHHHHHHHHHhhcCC-EEEEEEEeC
Q 028129 84 KHLLLPITDQNPYLSEGTRQAAATTAALAKKYGA-DITVVVIDE 126 (213)
Q Consensus 84 k~ILV~vD~~~~~~S~~s~~Al~~A~~LA~~~~a-~L~ll~V~~ 126 (213)
+++++-+. ..||+++....++++|..++...|. ++.++...+
T Consensus 2 ~k~~ii~~-~~p~~~~~~~~al~~a~~~~~~~g~~~v~vff~~d 44 (117)
T 1jx7_A 2 QKIVIVAN-GAPYGSESLFNSLRLAIALREQESNLDLRLFLMSD 44 (117)
T ss_dssp CEEEEEEC-CCTTTCSHHHHHHHHHHHHHHHCTTCEEEEEECGG
T ss_pred cEEEEEEc-CCCCCcHHHHHHHHHHHHHHhcCCCccEEEEEEch
Confidence 45666665 2466788899999999988765366 887775543
No 210
>2ywb_A GMP synthase [glutamine-hydrolyzing]; GMP synthetase, XMP binding, ATP binding, purine nucleotide biosynthetic pathway, structural genomics; 2.10A {Thermus thermophilus} PDB: 2ywc_A*
Probab=40.15 E-value=2e+02 Score=25.60 Aligned_cols=91 Identities=19% Similarity=0.162 Sum_probs=53.4
Q ss_pred CcEEEEeeCCCCCCCHHHHHHHHHHHHHHhhcCCEEEEEEEeCCCCCChhhHHHHHHHHHHHHHhCCCCceeEEEEE---
Q 028129 84 KHLLLPITDQNPYLSEGTRQAAATTAALAKKYGADITVVVIDERQKESLPEHENRLSSIRWHLSEGGFQEFRLLERL--- 160 (213)
Q Consensus 84 k~ILV~vD~~~~~~S~~s~~Al~~A~~LA~~~~a~L~ll~V~~~~~~~~~~~~~~l~~~~~~l~~~g~~~~~v~~~v--- 160 (213)
++|++++. |...|.-++..+.+. |.++.+++++...... .+ .+.+++..++.|++-+.+....
T Consensus 210 ~kvvvalS-----GGvDSsvla~ll~~~----g~~v~av~vd~g~~~~-~e----~~~v~~~~~~lgi~~~vv~~~~~f~ 275 (503)
T 2ywb_A 210 DRVLLAVS-----GGVDSSTLALLLAKA----GVDHLAVFVDHGLLRL-GE----REEVEGALRALGVNLLVVDAKERFL 275 (503)
T ss_dssp SEEEEEEC-----SSHHHHHHHHHHHHH----TCEEEEEEEECSCSCT-TH----HHHHHHHHHHTTCCEEEEECHHHHH
T ss_pred ccEEEEec-----CCcchHHHHHHHHHc----CCeEEEEEEeCCCCCh-HH----HHHHHHHHHHhCCCEEEEECcHHHH
Confidence 68999999 888887766665443 7889999988653211 11 2333344444576611111100
Q ss_pred --cccCCchH-----------HHHHHHHHHc-CCcEEEEccc
Q 028129 161 --GEGSSKPT-----------AIIGDVADEL-NLDLVIISME 188 (213)
Q Consensus 161 --~~G~~~p~-----------~~Il~~A~e~-~aDLIVmG~~ 188 (213)
..|.+++. ..+.++|+++ +++.|+.|++
T Consensus 276 ~~l~g~~~pe~~r~~~~~~~~~~l~~~A~~~~g~~~la~G~~ 317 (503)
T 2ywb_A 276 KALKGVEDPEEKRKIIGREFVAAFSQVARERGPFRFLAQGTL 317 (503)
T ss_dssp HHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHCCCSEEECCCC
T ss_pred HhhcCCCChHHHhhhhhHHHHHHHHHHHHhcCCCCEEEECCc
Confidence 11211232 2345668888 9999999995
No 211
>3fy4_A 6-4 photolyase; DNA repair, clock cryptochrome; HET: MES FAD; 2.70A {Arabidopsis thaliana}
Probab=39.86 E-value=57 Score=29.78 Aligned_cols=80 Identities=14% Similarity=0.108 Sum_probs=51.2
Q ss_pred CCHHHHHHHHHHHHHHhhcCCEEEEEEEeCCCC--------------CChh---hHHHHHHHHHHHHHhCCCCceeEEEE
Q 028129 97 LSEGTRQAAATTAALAKKYGADITVVVIDERQK--------------ESLP---EHENRLSSIRWHLSEGGFQEFRLLER 159 (213)
Q Consensus 97 ~S~~s~~Al~~A~~LA~~~~a~L~ll~V~~~~~--------------~~~~---~~~~~l~~~~~~l~~~g~~~~~v~~~ 159 (213)
+--....||..|+. .+..|..|.|.++.. .+.. -..+.|.++...+.+.|.. ..
T Consensus 15 LRl~DN~AL~~A~~----~~~~vlpvfi~dp~~~~~~~~~~~~g~~~~g~~r~~Fl~~sL~~L~~~L~~~G~~---L~-- 85 (537)
T 3fy4_A 15 LRVHDNPALEYASK----GSEFMYPVFVIDPHYMESDPSAFSPGSSRAGVNRIRFLLESLKDLDSSLKKLGSR---LL-- 85 (537)
T ss_dssp CCSTTCHHHHHHHT----TCSCEEEEEEECHHHHSCCTTSSSSBCSSCBHHHHHHHHHHHHHHHHHHHHTTCC---CE--
T ss_pred cccchhHHHHHHHh----cCCCEEEEEEeChhhhcccccccccccccCCHHHHHHHHHHHHHHHHHHHHcCCc---eE--
Confidence 34445567766643 355677776654321 1111 1224456666777888877 44
Q ss_pred EcccCCchHHHHHHHHHHcCCcEEEEcc
Q 028129 160 LGEGSSKPTAIIGDVADELNLDLVIISM 187 (213)
Q Consensus 160 v~~G~~~p~~~Il~~A~e~~aDLIVmG~ 187 (213)
+..|+ +.+.|.+++++.+++.|+.-.
T Consensus 86 v~~G~--~~~vl~~L~~~~~~~~V~~n~ 111 (537)
T 3fy4_A 86 VFKGE--PGEVLVRCLQEWKVKRLCFEY 111 (537)
T ss_dssp EEESC--HHHHHHHHHTTSCEEEEEECC
T ss_pred EEECC--HHHHHHHHHHHcCCCEEEEec
Confidence 34586 999999999999999998854
No 212
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=39.60 E-value=1.4e+02 Score=23.68 Aligned_cols=16 Identities=19% Similarity=0.337 Sum_probs=7.1
Q ss_pred HHHHHHHcCCcEEEEc
Q 028129 171 IGDVADELNLDLVIIS 186 (213)
Q Consensus 171 Il~~A~e~~aDLIVmG 186 (213)
+++.....++|-||+.
T Consensus 63 ~~~~l~~~~vdgiI~~ 78 (303)
T 3kke_A 63 LSRLVSEGRVDGVLLQ 78 (303)
T ss_dssp HHHHHHSCSSSEEEEC
T ss_pred HHHHHHhCCCcEEEEe
Confidence 3344444445544443
No 213
>1owl_A Photolyase, deoxyribodipyrimidine photolyase; DNA repair, flavin enzyme, photoreactivating enzyme; HET: FAD; 1.80A {Synechococcus elongatus} SCOP: a.99.1.1 c.28.1.1 PDB: 1owm_A* 1own_A* 1owo_A* 1owp_A* 1qnf_A* 1tez_A*
Probab=39.51 E-value=74 Score=28.35 Aligned_cols=76 Identities=18% Similarity=0.200 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHhhcCCEEEEEEEeCCCC-----CChh---hHHHHHHHHHHHHHhCCCCceeEEEEEcccCCchHHHHH
Q 028129 101 TRQAAATTAALAKKYGADITVVVIDERQK-----ESLP---EHENRLSSIRWHLSEGGFQEFRLLERLGEGSSKPTAIIG 172 (213)
Q Consensus 101 s~~Al~~A~~LA~~~~a~L~ll~V~~~~~-----~~~~---~~~~~l~~~~~~l~~~g~~~~~v~~~v~~G~~~p~~~Il 172 (213)
...||..|... ...+.+|.+.++.. .+.. -.-+.|.++.+.+.+.|.. +.. ..|+ +.+.|.
T Consensus 17 Dn~aL~~A~~~----~~~v~~vfi~dp~~~~~~~~~~~r~~fl~~sL~~L~~~L~~~G~~---L~v--~~g~--~~~~l~ 85 (484)
T 1owl_A 17 DNIGLAAARAQ----SAQLIGLFCLDPQILQSADMAPARVAYLQGCLQELQQRYQQAGSR---LLL--LQGD--PQHLIP 85 (484)
T ss_dssp SCHHHHHHHHH----CSCEEEEEEECHHHHTCTTCCHHHHHHHHHHHHHHHHHHHHHTSC---EEE--EESC--HHHHHH
T ss_pred hhHHHHHHHhc----CCCEEEEEEEcchhhcCCCCCHHHHHHHHHHHHHHHHHHHHCCCe---EEE--EeCC--HHHHHH
Confidence 34567666543 22576666654321 1111 1223455666677777887 543 4586 999999
Q ss_pred HHHHHcCCcEEEEcc
Q 028129 173 DVADELNLDLVIISM 187 (213)
Q Consensus 173 ~~A~e~~aDLIVmG~ 187 (213)
+++++++++.|+.-.
T Consensus 86 ~l~~~~~~~~v~~~~ 100 (484)
T 1owl_A 86 QLAQQLQAEAVYWNQ 100 (484)
T ss_dssp HHHHHTTCSEEEEEC
T ss_pred HHHHHcCCCEEEEec
Confidence 999999999998844
No 214
>1nu0_A Hypothetical protein YQGF; structural genomics, structure 2 function project, S2F, unknown function; 1.60A {Escherichia coli} SCOP: c.55.3.8 PDB: 1nmn_A 1ovq_A
Probab=39.08 E-value=41 Score=24.93 Aligned_cols=23 Identities=22% Similarity=0.277 Sum_probs=20.5
Q ss_pred chHHHHHHHHHHcCCcEEEEccc
Q 028129 166 KPTAIIGDVADELNLDLVIISME 188 (213)
Q Consensus 166 ~p~~~Il~~A~e~~aDLIVmG~~ 188 (213)
...+.|.+++++++++.||+|-.
T Consensus 40 ~~~~~l~~li~e~~v~~iVvGlP 62 (138)
T 1nu0_A 40 PDWNIIERLLKEWQPDEIIVGLP 62 (138)
T ss_dssp ECHHHHHHHHHHHCCSEEEEEEE
T ss_pred hHHHHHHHHHHHcCCCEEEEecc
Confidence 35789999999999999999964
No 215
>1wv2_A Thiazole moeity, thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI; 2.90A {Pseudomonas aeruginosa} SCOP: c.1.31.1
Probab=39.04 E-value=1.7e+02 Score=24.31 Aligned_cols=104 Identities=19% Similarity=0.180 Sum_probs=60.1
Q ss_pred CCHHHHHHHHHHHHHHhh--cCCEEEEEEEeCCCCCChhhHHHHHHHHHHHHHhCCCCceeEEEEEcccCCchHHHHHHH
Q 028129 97 LSEGTRQAAATTAALAKK--YGADITVVVIDERQKESLPEHENRLSSIRWHLSEGGFQEFRLLERLGEGSSKPTAIIGDV 174 (213)
Q Consensus 97 ~S~~s~~Al~~A~~LA~~--~~a~L~ll~V~~~~~~~~~~~~~~l~~~~~~l~~~g~~~~~v~~~v~~G~~~p~~~Il~~ 174 (213)
|-...++|++.| +||++ .+.+..=|.|.......++|..+.++.. +.+.++|+. +.... - ..-.+.+.
T Consensus 82 g~~ta~eAv~~a-~lare~~~~~~~iKlEv~~d~~~llpD~~~tv~aa-~~L~~~Gf~---Vlpy~--~---dd~~~akr 151 (265)
T 1wv2_A 82 GCYDAVEAVRTC-RLARELLDGHNLVKLEVLADQKTLFPNVVETLKAA-EQLVKDGFD---VMVYT--S---DDPIIARQ 151 (265)
T ss_dssp TCCSHHHHHHHH-HHHHTTTTSCCEEEECCBSCTTTCCBCHHHHHHHH-HHHHTTTCE---EEEEE--C---SCHHHHHH
T ss_pred CCCCHHHHHHHH-HHHHHHcCCCCeEEEEeecCccccCcCHHHHHHHH-HHHHHCCCE---EEEEe--C---CCHHHHHH
Confidence 666788888876 77877 3555554544333333345555545443 456777988 55333 1 22466677
Q ss_pred HHHcCCcEEEE-cccCCCCCCc-hHHH---HHhcCCCcEEE
Q 028129 175 ADELNLDLVII-SMEAIHSKHV-DANL---LAEFIPCPVLL 210 (213)
Q Consensus 175 A~e~~aDLIVm-G~~g~~~~Gs-~~~~---vl~~a~cPVLv 210 (213)
.++.++|.|.- |..-....|. +..+ +..+.++||++
T Consensus 152 l~~~G~~aVmPlg~pIGsG~Gi~~~~lI~~I~e~~~vPVI~ 192 (265)
T 1wv2_A 152 LAEIGCIAVMPLAGLIGSGLGICNPYNLRIILEEAKVPVLV 192 (265)
T ss_dssp HHHSCCSEEEECSSSTTCCCCCSCHHHHHHHHHHCSSCBEE
T ss_pred HHHhCCCEEEeCCccCCCCCCcCCHHHHHHHHhcCCCCEEE
Confidence 78889999966 4421111133 3222 35667899875
No 216
>2dpl_A GMP synthetase, GMP synthase [glutamine-hydrolyzing] subunit B; pyrococcus horikoshii OT3, structural genomics, NPPSFA; 1.43A {Pyrococcus horikoshii} PDB: 2z0c_A 3a4i_A
Probab=38.89 E-value=1.4e+02 Score=24.73 Aligned_cols=92 Identities=14% Similarity=0.212 Sum_probs=52.8
Q ss_pred CcEEEEeeCCCCCCCHHHHHHHHHHHHHHhhcCCEEEEEEEeCCCCCChhhHHHHHHHHHHHHH-hCCCCceeEEEE-E-
Q 028129 84 KHLLLPITDQNPYLSEGTRQAAATTAALAKKYGADITVVVIDERQKESLPEHENRLSSIRWHLS-EGGFQEFRLLER-L- 160 (213)
Q Consensus 84 k~ILV~vD~~~~~~S~~s~~Al~~A~~LA~~~~a~L~ll~V~~~~~~~~~~~~~~l~~~~~~l~-~~g~~~~~v~~~-v- 160 (213)
++|++++. |...|.-++..+.+. .|.++.+++++...... .+ .+.+.+.+. ..|++ +.+... .
T Consensus 21 ~kvlvalS-----GGvDSsvla~ll~~~---~g~~v~av~vd~g~~~~-~e----~~~~~~~~a~~lgi~-~~vv~~~~~ 86 (308)
T 2dpl_A 21 SKAIIALS-----GGVDSSTAAVLAHKA---IGDRLHAVFVNTGFLRK-GE----PEFVVKTFRDEFGMN-LHYVDAQDR 86 (308)
T ss_dssp SCEEEECC-----SSHHHHHHHHHHHHH---HGGGEEEEEEECSCCCT-TH----HHHHHHHHTTTTCCE-EEEEECHHH
T ss_pred CCEEEEEe-----ChHHHHHHHHHHHHh---hCCCEEEEEEcCCCCCh-HH----HHHHHHHHHHHcCCc-EEEEECCHH
Confidence 68999999 888887666665443 35678888888654221 11 222333232 34665 111110 0
Q ss_pred ----cccCCchH-----------HHHHHHHHHcCCcEEEEcccC
Q 028129 161 ----GEGSSKPT-----------AIIGDVADELNLDLVIISMEA 189 (213)
Q Consensus 161 ----~~G~~~p~-----------~~Il~~A~e~~aDLIVmG~~g 189 (213)
..|.++|. ..+.++|++++++.|+.|++.
T Consensus 87 f~~~l~~~~~pe~~~~~~~~~~~~~l~~~A~~~g~~~la~Gh~~ 130 (308)
T 2dpl_A 87 FFSALKGVTDPEEKRKIIGRVFIEVFEEVAKKIGAEYLIQGTIA 130 (308)
T ss_dssp HHHHTTTCCCHHHHHHHHHHHHHHHHHHHHHHHTCSEEECCCCC
T ss_pred HHHhhhCCCCHHHHHHHHHHHHHHHHHHHHHHcCcCEEEECCCC
Confidence 01210232 234568889999999999874
No 217
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=38.68 E-value=1.4e+02 Score=23.27 Aligned_cols=77 Identities=9% Similarity=0.003 Sum_probs=43.3
Q ss_pred CHHHHHHHHHHHHHHhhcCCEEEEEEEeCCCCCChhhHHHHHHHHHHHHHhCCCCceeEEEEEcccCCchHHHHHHHHHH
Q 028129 98 SEGTRQAAATTAALAKKYGADITVVVIDERQKESLPEHENRLSSIRWHLSEGGFQEFRLLERLGEGSSKPTAIIGDVADE 177 (213)
Q Consensus 98 S~~s~~Al~~A~~LA~~~~a~L~ll~V~~~~~~~~~~~~~~l~~~~~~l~~~g~~~~~v~~~v~~G~~~p~~~Il~~A~e 177 (213)
++.-...++...+.+++.|-++.++..... .+. ..+..+.+...++. -. +..+. +. ..+++.+.+
T Consensus 19 ~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~-------~~~-~~~~~~~l~~~~vd---gi--Ii~~~-~~-~~~~~~l~~ 83 (276)
T 3jy6_A 19 DYFSTELFKGISSILESRGYIGVLFDANAD-------IER-EKTLLRAIGSRGFD---GL--ILQSF-SN-PQTVQEILH 83 (276)
T ss_dssp SHHHHHHHHHHHHHHHTTTCEEEEEECTTC-------HHH-HHHHHHHHHTTTCS---EE--EEESS-CC-HHHHHHHHT
T ss_pred chHHHHHHHHHHHHHHHCCCEEEEEeCCCC-------HHH-HHHHHHHHHhCCCC---EE--EEecC-Cc-HHHHHHHHH
Confidence 445556666666677777877665443221 111 12223344455555 22 22233 34 677777888
Q ss_pred cCCcEEEEcccC
Q 028129 178 LNLDLVIISMEA 189 (213)
Q Consensus 178 ~~aDLIVmG~~g 189 (213)
.++=+|+++...
T Consensus 84 ~~iPvV~i~~~~ 95 (276)
T 3jy6_A 84 QQMPVVSVDREM 95 (276)
T ss_dssp TSSCEEEESCCC
T ss_pred CCCCEEEEeccc
Confidence 888889888753
No 218
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=38.60 E-value=97 Score=26.48 Aligned_cols=42 Identities=7% Similarity=0.078 Sum_probs=20.9
Q ss_pred HHHHHHHHcCCcEEEEcccCCCCCCchHHHHHh--cCCCcEEEE
Q 028129 170 IIGDVADELNLDLVIISMEAIHSKHVDANLLAE--FIPCPVLLL 211 (213)
Q Consensus 170 ~Il~~A~e~~aDLIVmG~~g~~~~Gs~~~~vl~--~a~cPVLvV 211 (213)
+.++..++..+|+|++-..-....|.....-++ ...+||+++
T Consensus 35 eal~~l~~~~~DlvllD~~mp~~dG~ell~~lr~~~~~~pvIvl 78 (387)
T 1ny5_A 35 EAYKLLSEKHFNVVLLDLLLPDVNGLEILKWIKERSPETEVIVI 78 (387)
T ss_dssp HHHHHHHHSCCSEEEEESBCSSSBHHHHHHHHHHHCTTSEEEEE
T ss_pred HHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEE
Confidence 344555566777777766433123443322222 345666654
No 219
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=38.57 E-value=1.1e+02 Score=26.04 Aligned_cols=42 Identities=10% Similarity=0.056 Sum_probs=22.3
Q ss_pred HHHHHHHHcCCcEEEEcccCCCCCCchHHHHH--hcCCCcEEEE
Q 028129 170 IIGDVADELNLDLVIISMEAIHSKHVDANLLA--EFIPCPVLLL 211 (213)
Q Consensus 170 ~Il~~A~e~~aDLIVmG~~g~~~~Gs~~~~vl--~~a~cPVLvV 211 (213)
+-++..++..+|+|++--.-....|.....-+ ....+||+++
T Consensus 35 eal~~l~~~~~DlvllDi~mP~~dG~ell~~lr~~~~~~pvI~l 78 (368)
T 3dzd_A 35 EAEKKIKELFFPVIVLDVWMPDGDGVNFIDFIKENSPDSVVIVI 78 (368)
T ss_dssp HHHHHHHHBCCSEEEEESEETTEETTTHHHHHHHHCTTCEEEEE
T ss_pred HHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhhCCCCeEEEE
Confidence 44455566778888876542211354443322 2345677664
No 220
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=38.32 E-value=1.5e+02 Score=23.57 Aligned_cols=20 Identities=5% Similarity=0.021 Sum_probs=11.7
Q ss_pred HHHHHHHHHcCCcEEEEccc
Q 028129 169 AIIGDVADELNLDLVIISME 188 (213)
Q Consensus 169 ~~Il~~A~e~~aDLIVmG~~ 188 (213)
...++.+.+.++=+|+++..
T Consensus 73 ~~~~~~~~~~~iPvV~~~~~ 92 (313)
T 3m9w_A 73 SNVVKEAKQEGIKVLAYDRM 92 (313)
T ss_dssp HHHHHHHHTTTCEEEEESSC
T ss_pred HHHHHHHHHCCCeEEEECCc
Confidence 34555556666666666653
No 221
>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus}
Probab=36.99 E-value=1.1e+02 Score=24.35 Aligned_cols=20 Identities=15% Similarity=0.320 Sum_probs=13.1
Q ss_pred HHHHHHHHHcCCcEEEEccc
Q 028129 169 AIIGDVADELNLDLVIISME 188 (213)
Q Consensus 169 ~~Il~~A~e~~aDLIVmG~~ 188 (213)
+..++.+++.++=+|+++..
T Consensus 96 ~~~~~~l~~~~iPvV~i~~~ 115 (305)
T 3huu_A 96 DPIEHLLNEFKVPYLIVGKS 115 (305)
T ss_dssp CHHHHHHHHTTCCEEEESCC
T ss_pred cHHHHHHHHcCCCEEEECCC
Confidence 35566666667777777764
No 222
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=36.57 E-value=1.5e+02 Score=22.93 Aligned_cols=67 Identities=15% Similarity=0.203 Sum_probs=33.7
Q ss_pred HHHHHHHhhcCCEEEEEEEeCCCCCChhhHHHHHHHHHHHHHhCCCCceeEEEEEcccCCchHHHHHHHHHHcCCcEEEE
Q 028129 106 ATTAALAKKYGADITVVVIDERQKESLPEHENRLSSIRWHLSEGGFQEFRLLERLGEGSSKPTAIIGDVADELNLDLVII 185 (213)
Q Consensus 106 ~~A~~LA~~~~a~L~ll~V~~~~~~~~~~~~~~l~~~~~~l~~~g~~~~~v~~~v~~G~~~p~~~Il~~A~e~~aDLIVm 185 (213)
-.++..|++++.++.++.-..... . ++.+...+ |++ +........ +-.+.+++.+++.++|+||=
T Consensus 84 l~al~~a~~~~~kIavvg~~~~~~-~-------~~~~~~ll---~~~---i~~~~~~~~-~e~~~~i~~l~~~G~~vvVG 148 (196)
T 2q5c_A 84 MRAVYNAKRFGNELALIAYKHSIV-D-------KHEIEAML---GVK---IKEFLFSSE-DEITTLISKVKTENIKIVVS 148 (196)
T ss_dssp HHHHHHHGGGCSEEEEEEESSCSS-C-------HHHHHHHH---TCE---EEEEEECSG-GGHHHHHHHHHHTTCCEEEE
T ss_pred HHHHHHHHhhCCcEEEEeCcchhh-H-------HHHHHHHh---CCc---eEEEEeCCH-HHHHHHHHHHHHCCCeEEEC
Confidence 345566778888888884433221 1 12222222 333 333333232 34455666666667777665
Q ss_pred cc
Q 028129 186 SM 187 (213)
Q Consensus 186 G~ 187 (213)
|.
T Consensus 149 ~~ 150 (196)
T 2q5c_A 149 GK 150 (196)
T ss_dssp CH
T ss_pred CH
Confidence 44
No 223
>2j07_A Deoxyribodipyrimidine photo-lyase; flavoprotein, nucleotide-binding, DNA repair; HET: FAD HDF; 1.95A {Thermus thermophilus} SCOP: a.99.1.1 c.28.1.1 PDB: 1iqu_A* 1iqr_A* 2j08_A* 2j09_A*
Probab=35.69 E-value=92 Score=27.18 Aligned_cols=76 Identities=17% Similarity=0.114 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHhhcCCEEEEEEEeCCCC--CChh---hHHHHHHHHHHHHHhCCCCceeEEEEEcccCCchHHHHHHH
Q 028129 100 GTRQAAATTAALAKKYGADITVVVIDERQK--ESLP---EHENRLSSIRWHLSEGGFQEFRLLERLGEGSSKPTAIIGDV 174 (213)
Q Consensus 100 ~s~~Al~~A~~LA~~~~a~L~ll~V~~~~~--~~~~---~~~~~l~~~~~~l~~~g~~~~~v~~~v~~G~~~p~~~Il~~ 174 (213)
....||..|.. .+ .+.+|.+.++.. .+.. -.-+.|.++.+.+++.|.. +.. ..|+ +.+.|.++
T Consensus 15 ~Dn~aL~~A~~----~~-~v~~vfi~d~~~~~~~~~r~~fl~~sL~~l~~~L~~~g~~---l~~--~~g~--~~~~l~~l 82 (420)
T 2j07_A 15 HDHPALLEALA----RG-PVVGLVVLDPNNLKTTPRRRAWFLENVRALREAYRARGGA---LWV--LEGL--PWEKVPEA 82 (420)
T ss_dssp TTCHHHHHHHT----TS-CEEEEEEECHHHHSSCHHHHHHHHHHHHHHHHHHHHTTCC---EEE--EESC--HHHHHHHH
T ss_pred cccHHHHHHHh----CC-CEEEEEEECCccccCCHHHHHHHHHHHHHHHHHHHHCCCe---EEE--EeCC--HHHHHHHH
Confidence 34456666643 23 566665554321 1211 1223455666677888887 543 4486 99999999
Q ss_pred HHHcCCcEEEEcc
Q 028129 175 ADELNLDLVIISM 187 (213)
Q Consensus 175 A~e~~aDLIVmG~ 187 (213)
+++++++.|+.-.
T Consensus 83 ~~~~~~~~v~~~~ 95 (420)
T 2j07_A 83 ARRLKAKAVYALT 95 (420)
T ss_dssp HHHTTCSEEEEEC
T ss_pred HHHcCCCEEEEec
Confidence 9999999998854
No 224
>3kcn_A Adenylate cyclase homolog; SGX, PSI 2, structural genomics, protein structure initiative; 2.45A {Rhodopirellula baltica}
Probab=35.69 E-value=1.1e+02 Score=21.29 Aligned_cols=9 Identities=11% Similarity=0.674 Sum_probs=5.0
Q ss_pred CcEEEEccc
Q 028129 180 LDLVIISME 188 (213)
Q Consensus 180 aDLIVmG~~ 188 (213)
+|+|++...
T Consensus 49 ~dlvi~D~~ 57 (151)
T 3kcn_A 49 FSVIMVDMR 57 (151)
T ss_dssp CSEEEEESC
T ss_pred CCEEEEeCC
Confidence 366666554
No 225
>3ce9_A Glycerol dehydrogenase; NP_348253.1, 3-dehydroquinate syntha structural genomics, joint center for structural genomics; HET: MSE; 2.37A {Clostridium acetobutylicum atcc 824}
Probab=35.60 E-value=77 Score=26.74 Aligned_cols=8 Identities=25% Similarity=0.181 Sum_probs=4.6
Q ss_pred CcEEEEee
Q 028129 84 KHLLLPIT 91 (213)
Q Consensus 84 k~ILV~vD 91 (213)
+++||-+|
T Consensus 35 ~~~livtd 42 (354)
T 3ce9_A 35 KRVSLYFG 42 (354)
T ss_dssp SEEEEEEE
T ss_pred CeEEEEEC
Confidence 45566555
No 226
>1qgu_B Protein (nitrogenase molybdenum iron protein); biological nitrogen fixation, nitrogen metabolism, molybdoenzymes, electron transfer; HET: HCA CFM CLF; 1.60A {Klebsiella pneumoniae} SCOP: c.92.2.3 PDB: 1h1l_B* 1qh1_B* 1qh8_B*
Probab=35.08 E-value=2.2e+02 Score=25.53 Aligned_cols=87 Identities=11% Similarity=-0.000 Sum_probs=49.5
Q ss_pred CCCcEEEEeeCCCCCCCHHHHHHHHHHHHHHhhcCCEEEEEEEeCCCCCChhhHHHHHHHHHHHHHhCCCCceeEEEEEc
Q 028129 82 NFKHLLLPITDQNPYLSEGTRQAAATTAALAKKYGADITVVVIDERQKESLPEHENRLSSIRWHLSEGGFQEFRLLERLG 161 (213)
Q Consensus 82 ~~k~ILV~vD~~~~~~S~~s~~Al~~A~~LA~~~~a~L~ll~V~~~~~~~~~~~~~~l~~~~~~l~~~g~~~~~v~~~v~ 161 (213)
.-|+++|..| ...++..+..|. +.|.++..+...... ++.+ +.+++.+.+..+.. .. .+.
T Consensus 359 ~Gkrv~i~gd---------~~~~~~la~~L~-ElGm~vv~v~~~~~~----~~~~---~~~~~ll~~~~~~~-~~--~v~ 418 (519)
T 1qgu_B 359 HGKKFGLYGD---------PDFVMGLTRFLL-ELGCEPTVILSHNAN----KRWQ---KAMNKMLDASPYGR-DS--EVF 418 (519)
T ss_dssp TTCEEEEESC---------HHHHHHHHHHHH-HTTCEEEEEEETTCC----HHHH---HHHHHHHHHSTTCT-TC--EEE
T ss_pred CCCEEEEECC---------chHHHHHHHHHH-HCCCEEEEEEeCCCC----HHHH---HHHHHHHHhcCCCC-CC--EEE
Confidence 4578888777 345666665565 788887766554422 1222 23333444432110 02 233
Q ss_pred ccCCchHHHHHHHHHHcCCcEEEEcccCC
Q 028129 162 EGSSKPTAIIGDVADELNLDLVIISMEAI 190 (213)
Q Consensus 162 ~G~~~p~~~Il~~A~e~~aDLIVmG~~g~ 190 (213)
.+. -..++.+.+++.++||||=+.+++
T Consensus 419 ~~~--d~~~l~~~i~~~~pDLiig~~~~~ 445 (519)
T 1qgu_B 419 INC--DLWHFRSLMFTRQPDFMIGNSYGK 445 (519)
T ss_dssp ESC--CHHHHHHHHHHHCCSEEEECGGGH
T ss_pred ECC--CHHHHHHHHhhcCCCEEEECcchH
Confidence 343 345678888888999999776643
No 227
>2pju_A Propionate catabolism operon regulatory protein; structural genomics, PRPR, transcriptional regulation, PSI- 2, protein structure initiative; 2.10A {Escherichia coli} SCOP: c.92.3.1
Probab=34.58 E-value=1.7e+02 Score=23.24 Aligned_cols=21 Identities=33% Similarity=0.227 Sum_probs=13.8
Q ss_pred HHHHHHHhhcCCEEEEEEEeC
Q 028129 106 ATTAALAKKYGADITVVVIDE 126 (213)
Q Consensus 106 ~~A~~LA~~~~a~L~ll~V~~ 126 (213)
-.++..|++++.++.++.-..
T Consensus 96 l~aL~~a~~~~~kIavVg~~~ 116 (225)
T 2pju_A 96 LQFLAKAGKLTSSIGVVTYQE 116 (225)
T ss_dssp HHHHHHTTCTTSCEEEEEESS
T ss_pred HHHHHHHHhhCCcEEEEeCch
Confidence 345566777888888874443
No 228
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=34.54 E-value=1.6e+02 Score=22.91 Aligned_cols=19 Identities=11% Similarity=0.020 Sum_probs=11.3
Q ss_pred HHHHHHHHcCCcEEEEccc
Q 028129 170 IIGDVADELNLDLVIISME 188 (213)
Q Consensus 170 ~Il~~A~e~~aDLIVmG~~ 188 (213)
.+++.+.+.++-+|+++..
T Consensus 80 ~~~~~~~~~~iPvV~~~~~ 98 (293)
T 3l6u_A 80 SAIEEAKKAGIPVFAIDRM 98 (293)
T ss_dssp HHHHHHHHTTCCEEEESSC
T ss_pred HHHHHHHHcCCCEEEecCC
Confidence 4455555566666666654
No 229
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=34.26 E-value=1.3e+02 Score=23.71 Aligned_cols=76 Identities=8% Similarity=0.023 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHhhcCCEEEEEEEeCCCCCChhhHHHHHHHHHHHHHhCCCCceeEEEEEcccCCchHHHHHHHHHHc
Q 028129 99 EGTRQAAATTAALAKKYGADITVVVIDERQKESLPEHENRLSSIRWHLSEGGFQEFRLLERLGEGSSKPTAIIGDVADEL 178 (213)
Q Consensus 99 ~~s~~Al~~A~~LA~~~~a~L~ll~V~~~~~~~~~~~~~~l~~~~~~l~~~g~~~~~v~~~v~~G~~~p~~~Il~~A~e~ 178 (213)
+.-...++-+.+.+++.|-.+.+..... +.+. .....+.+...++. -. +..+. +..+.+++.+.+.
T Consensus 25 ~f~~~~~~gi~~~a~~~g~~~~~~~~~~-------~~~~-~~~~~~~l~~~~vd---Gi--I~~~~-~~~~~~~~~l~~~ 90 (295)
T 3hcw_A 25 PFYINVLLGISETCNQHGYGTQTTVSNN-------MNDL-MDEVYKMIKQRMVD---AF--ILLYS-KENDPIKQMLIDE 90 (295)
T ss_dssp HHHHHHHHHHHHHHHTTTCEEEECCCCS-------HHHH-HHHHHHHHHTTCCS---EE--EESCC-CTTCHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHCCCEEEEEcCCC-------ChHH-HHHHHHHHHhCCcC---EE--EEcCc-ccChHHHHHHHhC
Confidence 3444555555556666666654332111 1111 12223344444555 22 11121 2233556666666
Q ss_pred CCcEEEEccc
Q 028129 179 NLDLVIISME 188 (213)
Q Consensus 179 ~aDLIVmG~~ 188 (213)
++=+|+++..
T Consensus 91 ~iPvV~i~~~ 100 (295)
T 3hcw_A 91 SMPFIVIGKP 100 (295)
T ss_dssp TCCEEEESCC
T ss_pred CCCEEEECCC
Confidence 7777777764
No 230
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=33.87 E-value=1.3e+02 Score=23.54 Aligned_cols=78 Identities=12% Similarity=-0.000 Sum_probs=38.7
Q ss_pred CHHHHHHHHHHHHHHhhcCCEEEEEEEeCCCCCChhhHHHHHHHHHHHHHhCCCCceeEEEEEcccCCchHHHHHHHHHH
Q 028129 98 SEGTRQAAATTAALAKKYGADITVVVIDERQKESLPEHENRLSSIRWHLSEGGFQEFRLLERLGEGSSKPTAIIGDVADE 177 (213)
Q Consensus 98 S~~s~~Al~~A~~LA~~~~a~L~ll~V~~~~~~~~~~~~~~l~~~~~~l~~~g~~~~~v~~~v~~G~~~p~~~Il~~A~e 177 (213)
++.-...++...+.+++.|..+.++.... +. +......+.+...++. -.. ..+. +..+..++.+.+
T Consensus 25 ~~~~~~~~~gi~~~a~~~g~~~~~~~~~~-------~~-~~~~~~~~~~~~~~vd---giI--i~~~-~~~~~~~~~l~~ 90 (292)
T 3k4h_A 25 NPFFPEVIRGISSFAHVEGYALYMSTGET-------EE-EIFNGVVKMVQGRQIG---GII--LLYS-RENDRIIQYLHE 90 (292)
T ss_dssp STHHHHHHHHHHHHHHHTTCEEEECCCCS-------HH-HHHHHHHHHHHTTCCC---EEE--ESCC-BTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCEEEEEeCCC-------CH-HHHHHHHHHHHcCCCC---EEE--EeCC-CCChHHHHHHHH
Confidence 33444555555566677776655432111 11 1122333344455555 221 1122 233456677777
Q ss_pred cCCcEEEEcccC
Q 028129 178 LNLDLVIISMEA 189 (213)
Q Consensus 178 ~~aDLIVmG~~g 189 (213)
.++=+|+++...
T Consensus 91 ~~iPvV~~~~~~ 102 (292)
T 3k4h_A 91 QNFPFVLIGKPY 102 (292)
T ss_dssp TTCCEEEESCCS
T ss_pred CCCCEEEECCCC
Confidence 788888887753
No 231
>3luf_A Two-component system response regulator/ggdef domain protein; structural genomics, ASA_2441, PSI-2, protein structure initiative; HET: MSE; 1.76A {Aeromonas salmonicida} PDB: 3mf4_A*
Probab=33.73 E-value=1.5e+02 Score=23.41 Aligned_cols=77 Identities=10% Similarity=0.133 Sum_probs=40.1
Q ss_pred EEEEEEEeCCCCCChhhHHHHHHHHHHHHHhCCCCceeEEEEEcccCCchHHHHHHHHHHc-CCcEEEEcccCCCCCCch
Q 028129 118 DITVVVIDERQKESLPEHENRLSSIRWHLSEGGFQEFRLLERLGEGSSKPTAIIGDVADEL-NLDLVIISMEAIHSKHVD 196 (213)
Q Consensus 118 ~L~ll~V~~~~~~~~~~~~~~l~~~~~~l~~~g~~~~~v~~~v~~G~~~p~~~Il~~A~e~-~aDLIVmG~~g~~~~Gs~ 196 (213)
.+.++.|++.. ...+.+...+...|+. +. ... +..+++ +..+++ .+|+|++--.-....|..
T Consensus 124 ~~~ILivDD~~--------~~~~~l~~~L~~~~~~---v~-~a~----~~~eal-~~l~~~~~~dlvllD~~mP~~dG~~ 186 (259)
T 3luf_A 124 QIEVLVVDDSR--------TSRHRTMAQLRKQLLQ---VH-EAS----HAREAL-ATLEQHPAIRLVLVDYYMPEIDGIS 186 (259)
T ss_dssp TCEEEEECSCH--------HHHHHHHHHHHTTTCE---EE-EES----SHHHHH-HHHHHCTTEEEEEECSCCSSSCHHH
T ss_pred CCcEEEEeCCH--------HHHHHHHHHHHHcCcE---EE-EeC----CHHHHH-HHHhcCCCCCEEEEcCCCCCCCHHH
Confidence 35566666532 2223334445555655 44 232 244444 445555 489999977543225665
Q ss_pred HHHHHhc----CCCcEEEE
Q 028129 197 ANLLAEF----IPCPVLLL 211 (213)
Q Consensus 197 ~~~vl~~----a~cPVLvV 211 (213)
-..-+++ ..+||+++
T Consensus 187 l~~~lr~~~~~~~~~ii~~ 205 (259)
T 3luf_A 187 LVRMLRERYSKQQLAIIGI 205 (259)
T ss_dssp HHHHHHHHCCTTTSEEEEE
T ss_pred HHHHHHhccCCCCCeEEEE
Confidence 5444432 35778764
No 232
>2jk1_A HUPR, hydrogenase transcriptional regulatory protein HU; nucleotide-binding, transcription regulation; 2.10A {Rhodobacter capsulatus} PDB: 2vui_B 2vuh_B
Probab=33.73 E-value=1.1e+02 Score=20.82 Aligned_cols=19 Identities=11% Similarity=0.104 Sum_probs=10.0
Q ss_pred HHHHHHHHcCCcEEEEccc
Q 028129 170 IIGDVADELNLDLVIISME 188 (213)
Q Consensus 170 ~Il~~A~e~~aDLIVmG~~ 188 (213)
+.++..++..+|+|++...
T Consensus 35 ~a~~~~~~~~~dlvl~D~~ 53 (139)
T 2jk1_A 35 AAIAILEEEWVQVIICDQR 53 (139)
T ss_dssp HHHHHHHHSCEEEEEEESC
T ss_pred HHHHHHhcCCCCEEEEeCC
Confidence 3334444555666666554
No 233
>1vl2_A Argininosuccinate synthase; TM1780, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics, ligase; 1.65A {Thermotoga maritima} SCOP: c.26.2.1 d.210.1.1
Probab=33.41 E-value=2.5e+02 Score=24.73 Aligned_cols=94 Identities=14% Similarity=0.061 Sum_probs=53.8
Q ss_pred cCCCcEEEEeeCCCCCCCHHHHHHHHHHHHHHhhcCCEEEEEEEeCCCCCChhhHHHHHHHHHHHHHhCCCCceeEEEE-
Q 028129 81 TNFKHLLLPITDQNPYLSEGTRQAAATTAALAKKYGADITVVVIDERQKESLPEHENRLSSIRWHLSEGGFQEFRLLER- 159 (213)
Q Consensus 81 ~~~k~ILV~vD~~~~~~S~~s~~Al~~A~~LA~~~~a~L~ll~V~~~~~~~~~~~~~~l~~~~~~l~~~g~~~~~v~~~- 159 (213)
.|-++|+|++. |.-.+.-++.++ ++.|.+++.++++-..... ++.+++.....|+..+.+...
T Consensus 12 ~~~~KVVVA~S-----GGlDSSv~a~~L----ke~G~eViavt~d~Gq~~E-------le~A~~vA~~lGi~~~~VvDl~ 75 (421)
T 1vl2_A 12 HMKEKVVLAYS-----GGLDTSVILKWL----CEKGFDVIAYVANVGQKDD-------FVAIKEKALKTGASKVYVEDLR 75 (421)
T ss_dssp --CCEEEEECC-----SSHHHHHHHHHH----HHTTCEEEEEEEESSCCCC-------HHHHHHHHHHHTCSEEEEEECH
T ss_pred cccCCEEEEeC-----CcHHHHHHHHHH----HHCCCeEEEEEEEcCCHHH-------HHHHHHHHHHcCCceEEEEecH
Confidence 46678999999 776666555444 3447889888887654322 223333333335421111100
Q ss_pred --E--------------cccCC---------chHHHHHHHHHHcCCcEEEEcccCC
Q 028129 160 --L--------------GEGSS---------KPTAIIGDVADELNLDLVIISMEAI 190 (213)
Q Consensus 160 --v--------------~~G~~---------~p~~~Il~~A~e~~aDLIVmG~~g~ 190 (213)
. .+|.- -....++++|++.++|.|..|+.++
T Consensus 76 eef~~~v~~p~i~~na~yeg~Y~~g~~l~Rp~i~~~l~~~A~~~Gad~IA~G~~~k 131 (421)
T 1vl2_A 76 REFVTDYIFTALLGNAMYEGRYLLGTAIARPLIAKRQVEIAEKEGAQYVAHGATGK 131 (421)
T ss_dssp HHHHHHTHHHHHTTTCCBTTTBCCHHHHHHHHHHHHHHHHHHHHTCSEEECCCCTT
T ss_pred HHHHHhhhhHHHhcCCcccCceeCCCcccHHHHHHHHHHHHHHcCCCEEEECCeeC
Confidence 0 01100 0225578999999999999999875
No 234
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=33.19 E-value=1.7e+02 Score=22.81 Aligned_cols=21 Identities=10% Similarity=-0.054 Sum_probs=12.4
Q ss_pred HHHHHHHHHHcCCcEEEEccc
Q 028129 168 TAIIGDVADELNLDLVIISME 188 (213)
Q Consensus 168 ~~~Il~~A~e~~aDLIVmG~~ 188 (213)
...+++.+.+.++-+|+++..
T Consensus 76 ~~~~~~~~~~~~iPvV~~~~~ 96 (291)
T 3egc_A 76 EHDYLRTELPKTFPIVAVNRE 96 (291)
T ss_dssp CCHHHHHSSCTTSCEEEESSC
T ss_pred ChHHHHHhhccCCCEEEEecc
Confidence 344555555566667776664
No 235
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=32.41 E-value=1.4e+02 Score=23.37 Aligned_cols=79 Identities=8% Similarity=-0.009 Sum_probs=41.5
Q ss_pred CHHHHHHHHHHHHHHhhcCCEEEEEEEeCCCCCChhhHHHHHHHHHHHHHhCCCCceeEEEEEcccC-CchHHHHHHHHH
Q 028129 98 SEGTRQAAATTAALAKKYGADITVVVIDERQKESLPEHENRLSSIRWHLSEGGFQEFRLLERLGEGS-SKPTAIIGDVAD 176 (213)
Q Consensus 98 S~~s~~Al~~A~~LA~~~~a~L~ll~V~~~~~~~~~~~~~~l~~~~~~l~~~g~~~~~v~~~v~~G~-~~p~~~Il~~A~ 176 (213)
.+.-...++...+.+++.|-++.++.... +.+...+. .+.+...+++ -.... +. .+.....++.+.
T Consensus 17 ~~~~~~~~~gi~~~a~~~g~~~~~~~~~~-------~~~~~~~~-~~~l~~~~vd---giIi~--~~~~~~~~~~~~~~~ 83 (291)
T 3l49_A 17 HDWDLKAYQAQIAEIERLGGTAIALDAGR-------NDQTQVSQ-IQTLIAQKPD---AIIEQ--LGNLDVLNPWLQKIN 83 (291)
T ss_dssp SHHHHHHHHHHHHHHHHTTCEEEEEECTT-------CHHHHHHH-HHHHHHHCCS---EEEEE--SSCHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCCEEEEEcCCC-------CHHHHHHH-HHHHHHcCCC---EEEEe--CCChhhhHHHHHHHH
Confidence 44445566666667777787766553221 11121222 2233334555 22222 22 014566777778
Q ss_pred HcCCcEEEEcccC
Q 028129 177 ELNLDLVIISMEA 189 (213)
Q Consensus 177 e~~aDLIVmG~~g 189 (213)
+.++=+|+++...
T Consensus 84 ~~~iPvV~~~~~~ 96 (291)
T 3l49_A 84 DAGIPLFTVDTAT 96 (291)
T ss_dssp HTTCCEEEESCCC
T ss_pred HCCCcEEEecCCC
Confidence 8888888888753
No 236
>3k32_A Uncharacterized protein MJ0690; predicted subunit of tRNA methyltransferase, methanocaldococcus jannaschii DSM , PSI- 2; 2.50A {Methanocaldococcus jannaschii}
Probab=32.38 E-value=1.7e+02 Score=22.44 Aligned_cols=38 Identities=13% Similarity=0.153 Sum_probs=27.1
Q ss_pred CCCcEEEEeeCCCCCCCHHHHHHHHHHHHHHhhcCCEEEEEEEeCCC
Q 028129 82 NFKHLLLPITDQNPYLSEGTRQAAATTAALAKKYGADITVVVIDERQ 128 (213)
Q Consensus 82 ~~k~ILV~vD~~~~~~S~~s~~Al~~A~~LA~~~~a~L~ll~V~~~~ 128 (213)
.+++|+|++. |...|.-++..+ .+.|.++..++++...
T Consensus 5 ~~~kv~v~~S-----GG~DS~~ll~ll----~~~g~~v~~~~v~~~~ 42 (203)
T 3k32_A 5 KLMDVHVLFS-----GGKDSSLSAVIL----KKLGYNPHLITINFGV 42 (203)
T ss_dssp -CEEEEEECC-----CSHHHHHHHHHH----HHTTEEEEEEEEECSS
T ss_pred cCCeEEEEEE-----CcHHHHHHHHHH----HHcCCCeEEEEEeCCC
Confidence 3578999999 787777666443 3457788888887654
No 237
>3rjz_A N-type ATP pyrophosphatase superfamily; structural genomics, PSI-biology, northeast structural genom consortium, NESG, alpha-beta protein; 2.30A {Pyrococcus furiosus} SCOP: c.26.2.1 PDB: 3h7e_A 3rk0_A* 3rk1_A* 1ru8_A 2d13_A
Probab=32.28 E-value=1.1e+02 Score=24.87 Aligned_cols=93 Identities=14% Similarity=0.123 Sum_probs=46.9
Q ss_pred CcEEEEeeCCCCCCCHHHHHHHHHHHHHHhhcCCEEEEEE-EeCCCCCChhhHHHHHHHHHHHHHhCCCCceeEEEEEcc
Q 028129 84 KHLLLPITDQNPYLSEGTRQAAATTAALAKKYGADITVVV-IDERQKESLPEHENRLSSIRWHLSEGGFQEFRLLERLGE 162 (213)
Q Consensus 84 k~ILV~vD~~~~~~S~~s~~Al~~A~~LA~~~~a~L~ll~-V~~~~~~~~~~~~~~l~~~~~~l~~~g~~~~~v~~~v~~ 162 (213)
.++++.+. |...|.-++. ++++.|-++..++ ................+.++...+.-|++ ....-..
T Consensus 5 MKvvvl~S-----GGkDSs~al~----~l~~~G~eV~~L~~~~~~~~~s~~~h~~~~e~a~~~A~~LGIp---l~~v~~~ 72 (237)
T 3rjz_A 5 ADVAVLYS-----GGKDSNYALY----WAIKNRFSVKFLVTMVSENEESYMYHTINANLTDLQARALGIP---LVKGFTQ 72 (237)
T ss_dssp SEEEEECC-----SSHHHHHHHH----HHHHTTCEEEEEEEEECC--------CCSSSHHHHHHHHHTCC---EEEEEC-
T ss_pred CEEEEEec-----CcHHHHHHHH----HHHHcCCeEEEEEEEcCCCCCccccCCccHHHHHHHHHHcCCC---EEEEECC
Confidence 37899999 7777775544 4556677887663 33221111000000012223334444777 3322222
Q ss_pred cC-CchHHHHHHHHHHcCCcEEEEccc
Q 028129 163 GS-SKPTAIIGDVADELNLDLVIISME 188 (213)
Q Consensus 163 G~-~~p~~~Il~~A~e~~aDLIVmG~~ 188 (213)
|. .+-.+.+.+..++.+++-+|.|.-
T Consensus 73 g~~~~e~e~l~~~l~~~~i~~vv~Gdi 99 (237)
T 3rjz_A 73 GEKEKEVEDLKRVLSGLKIQGIVAGAL 99 (237)
T ss_dssp -----CHHHHHHHHTTSCCSEEECC--
T ss_pred CCchHHHHHHHHHHHhcCCcEEEECCc
Confidence 31 023566777777779999999984
No 238
>1dnp_A DNA photolyase; DNA repair, electron transfer, excitation energy transfer, carbon-carbon, lyase (carbon-carbon); HET: DNA FAD MHF; 2.30A {Escherichia coli} SCOP: a.99.1.1 c.28.1.1
Probab=32.02 E-value=79 Score=28.10 Aligned_cols=79 Identities=18% Similarity=0.149 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHhhcCCEEEEEEEeCCCC-----CChh---hHHHHHHHHHHHHHhCCCCceeEEEEEc--ccCCchHHH
Q 028129 101 TRQAAATTAALAKKYGADITVVVIDERQK-----ESLP---EHENRLSSIRWHLSEGGFQEFRLLERLG--EGSSKPTAI 170 (213)
Q Consensus 101 s~~Al~~A~~LA~~~~a~L~ll~V~~~~~-----~~~~---~~~~~l~~~~~~l~~~g~~~~~v~~~v~--~G~~~p~~~ 170 (213)
...||..|+.. ..+ .|.+|.+.++.. .+.. -.-+.|.++.+.+.+.|.. +..... .|+ +.+.
T Consensus 15 DN~aL~~A~~~--~~~-~v~~vfi~dp~~~~~~~~~~~r~~fl~~sL~~L~~~L~~~G~~---L~v~~~~~~g~--~~~~ 86 (471)
T 1dnp_A 15 DNLALAAACRN--SSA-RVLALYIATPRQWATHNMSPRQAELINAQLNGLQIALAEKGIP---LLFREVDDFVA--SVEI 86 (471)
T ss_dssp TCHHHHHHSSS--TTS-EEEEEEEECHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHTTCC---EEEEECSSHHH--HHHH
T ss_pred chHHHHHHHhC--CCC-CEEEEEEECchhhccCCCCHHHHHHHHHHHHHHHHHHHHCCCe---EEEEEccCCCC--HHHH
Confidence 34566666542 123 787776665421 1111 1233456666677888887 543311 585 9999
Q ss_pred HHHHHHHcCCcEEEEcc
Q 028129 171 IGDVADELNLDLVIISM 187 (213)
Q Consensus 171 Il~~A~e~~aDLIVmG~ 187 (213)
|.+++++++++.|+.-.
T Consensus 87 l~~l~~~~~~~~v~~~~ 103 (471)
T 1dnp_A 87 VKQVCAENSVTHLFYNY 103 (471)
T ss_dssp HHHHHHHHTCCEEEEEC
T ss_pred HHHHHHHcCCCEEEEec
Confidence 99999999999998844
No 239
>3eqz_A Response regulator; structural genomics, unknown function, PSI-2, protein struct initiative; 2.15A {Colwellia psychrerythraea} SCOP: c.23.1.0
Probab=32.01 E-value=69 Score=21.59 Aligned_cols=9 Identities=22% Similarity=0.634 Sum_probs=4.7
Q ss_pred CcEEEEccc
Q 028129 180 LDLVIISME 188 (213)
Q Consensus 180 aDLIVmG~~ 188 (213)
+|+||+...
T Consensus 47 ~dlvi~D~~ 55 (135)
T 3eqz_A 47 QDIIILDLM 55 (135)
T ss_dssp TEEEEEECC
T ss_pred CCEEEEeCC
Confidence 555555543
No 240
>1m5w_A Pyridoxal phosphate biosynthetic protein PDXJ; TIM barrel, protein-substrate complex, multi-binding states; HET: DXP; 1.96A {Escherichia coli} SCOP: c.1.24.1 PDB: 1ho1_A 1ho4_A* 1ixn_A* 1ixo_A* 1ixp_A 1ixq_A 3f4n_A*
Probab=31.22 E-value=1.3e+02 Score=24.74 Aligned_cols=46 Identities=13% Similarity=0.161 Sum_probs=37.2
Q ss_pred hHHHHHHHHHHHHHhCCCCceeEEEEEcccCCchHHHHHHHHHHcCCcEEEEcc
Q 028129 134 EHENRLSSIRWHLSEGGFQEFRLLERLGEGSSKPTAIIGDVADELNLDLVIISM 187 (213)
Q Consensus 134 ~~~~~l~~~~~~l~~~g~~~~~v~~~v~~G~~~p~~~Il~~A~e~~aDLIVmG~ 187 (213)
...+.+..+.+.+++.|+. +...+ ||..+-++.|.+.++|.|=+=+
T Consensus 111 ~~~~~l~~~i~~L~~~GIr---VSLFI-----Dpd~~qi~aA~~~GA~~IELhT 156 (243)
T 1m5w_A 111 GQRDKMRDACKRLADAGIQ---VSLFI-----DADEEQIKAAAEVGAPFIEIHT 156 (243)
T ss_dssp GGHHHHHHHHHHHHHTTCE---EEEEE-----CSCHHHHHHHHHTTCSEEEEEC
T ss_pred hhHHHHHHHHHHHHHCCCE---EEEEe-----CCCHHHHHHHHHhCcCEEEEec
Confidence 3456677888889999999 87777 5778889999999999987733
No 241
>1vhx_A Putative holliday junction resolvase; structural genomics, hydrolase; 1.96A {Bacillus subtilis} SCOP: c.55.3.8
Probab=31.00 E-value=28 Score=26.19 Aligned_cols=46 Identities=11% Similarity=0.226 Sum_probs=30.3
Q ss_pred chHHHHHHHHHHcCCcEEEEcccCCC--CCCchH----H---HHHhcCCCcEEEE
Q 028129 166 KPTAIIGDVADELNLDLVIISMEAIH--SKHVDA----N---LLAEFIPCPVLLL 211 (213)
Q Consensus 166 ~p~~~Il~~A~e~~aDLIVmG~~g~~--~~Gs~~----~---~vl~~a~cPVLvV 211 (213)
...+.|.++++++++|.||+|-.-.. ..+... . .+..+.++||..|
T Consensus 42 ~~~~~l~~li~~~~~~~ivVGlP~~~nGt~~~~~~~ar~f~~~L~~~~~lpV~~v 96 (150)
T 1vhx_A 42 YGLSRLSELIKDYTIDKIVLGFPKNMNGTVGPRGEASQTFAKVLETTYNVPVVLW 96 (150)
T ss_dssp CCHHHHHHHHTTSEEEEEEEECCCCBTTBCCHHHHHHHHHHHHHHHHHCSCEEEE
T ss_pred HHHHHHHHHHHHcCCCEEEEeeeecCCcchhHHHHHHHHHHHHHHHhhCCCEEEe
Confidence 37899999999999999999954210 012221 1 2344458898875
No 242
>3gxq_A Putative regulator of transfer genes ARTA; ribbon-helix-helix, plasmid, DNA binding protein/DNA complex; HET: DNA; 2.35A {Staphylococcus aureus subsp}
Probab=30.79 E-value=33 Score=20.65 Aligned_cols=26 Identities=19% Similarity=0.009 Sum_probs=17.9
Q ss_pred EEEEEcccCCchHHHHHHHHHHcCCcE
Q 028129 156 LLERLGEGSSKPTAIIGDVADELNLDL 182 (213)
Q Consensus 156 v~~~v~~G~~~p~~~Il~~A~e~~aDL 182 (213)
+..++.... +..++|++||++.+.|-
T Consensus 12 vslhllvdp-dmkdeiikyaqekdfdn 37 (54)
T 3gxq_A 12 VSLHLLVDP-DMKDEIIKYAQEKDFDN 37 (54)
T ss_dssp EEEEEEECH-HHHHHHHHHHHHHSTTC
T ss_pred eEEEEeeCC-chhHHHHHHHHHccchh
Confidence 333333344 57899999999988774
No 243
>3nkl_A UDP-D-quinovosamine 4-dehydrogenase; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; HET: MSE GOL; 1.90A {Vibrio fischeri}
Probab=30.67 E-value=47 Score=23.57 Aligned_cols=19 Identities=5% Similarity=0.233 Sum_probs=11.0
Q ss_pred HHHHHHHHcCCcEEEEccc
Q 028129 170 IIGDVADELNLDLVIISME 188 (213)
Q Consensus 170 ~Il~~A~e~~aDLIVmG~~ 188 (213)
.+.++++++++|.|++...
T Consensus 56 ~l~~~~~~~~id~viia~~ 74 (141)
T 3nkl_A 56 YLERLIKKHCISTVLLAVP 74 (141)
T ss_dssp GHHHHHHHHTCCEEEECCT
T ss_pred HHHHHHHHCCCCEEEEeCC
Confidence 4555556666666666543
No 244
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=30.58 E-value=2.2e+02 Score=23.09 Aligned_cols=11 Identities=9% Similarity=0.226 Sum_probs=6.6
Q ss_pred hhhhhhhhccc
Q 028129 55 PRFRRIGHKAK 65 (213)
Q Consensus 55 ~~~~r~~~~a~ 65 (213)
.|++-+++.++
T Consensus 11 ~ti~diA~~ag 21 (344)
T 3kjx_A 11 LTLRDVSEASG 21 (344)
T ss_dssp CCHHHHHHHHC
T ss_pred CCHHHHHHHHC
Confidence 45666666666
No 245
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=30.43 E-value=73 Score=25.16 Aligned_cols=37 Identities=22% Similarity=0.319 Sum_probs=28.9
Q ss_pred HHHHHhCCCCceeEEEEEcccCCchHHHHHHHHHHcCCcEEEE
Q 028129 143 RWHLSEGGFQEFRLLERLGEGSSKPTAIIGDVADELNLDLVII 185 (213)
Q Consensus 143 ~~~l~~~g~~~~~v~~~v~~G~~~p~~~Il~~A~e~~aDLIVm 185 (213)
...+...|++ +.. + |.+-|.+.|++.++++++|+|.+
T Consensus 113 ~~~l~~~G~~---Vi~-L--G~~vp~e~iv~~~~~~~~d~v~l 149 (215)
T 3ezx_A 113 TTMLGANGFQ---IVD-L--GVDVLNENVVEEAAKHKGEKVLL 149 (215)
T ss_dssp HHHHHHTSCE---EEE-C--CSSCCHHHHHHHHHHTTTSCEEE
T ss_pred HHHHHHCCCe---EEE-c--CCCCCHHHHHHHHHHcCCCEEEE
Confidence 3467788988 552 3 32248999999999999999999
No 246
>1mio_B Nitrogenase molybdenum iron protein (beta chain); HET: HCA CFM CLP; 3.00A {Clostridium pasteurianum} SCOP: c.92.2.3
Probab=30.28 E-value=2.8e+02 Score=24.26 Aligned_cols=84 Identities=17% Similarity=0.043 Sum_probs=50.7
Q ss_pred CCCcEEEEeeCCCCCCCHHHHHHHHHHHHHHhhcCCEEEEEEEeCCCCCChhhHHHHHHHHHHHHHhCC-CCceeEEEEE
Q 028129 82 NFKHLLLPITDQNPYLSEGTRQAAATTAALAKKYGADITVVVIDERQKESLPEHENRLSSIRWHLSEGG-FQEFRLLERL 160 (213)
Q Consensus 82 ~~k~ILV~vD~~~~~~S~~s~~Al~~A~~LA~~~~a~L~ll~V~~~~~~~~~~~~~~l~~~~~~l~~~g-~~~~~v~~~v 160 (213)
.-|+++|..| ...++..+..|. +.|.++..+...... ++. -+.+++.+.+.+ .. .. +
T Consensus 311 ~gkrv~i~~~---------~~~~~~l~~~L~-elG~~vv~v~~~~~~----~~~---~~~~~~ll~~~~~~~---~~--v 368 (458)
T 1mio_B 311 QGKKVALLGD---------PDEIIALSKFII-ELGAIPKYVVTGTPG----MKF---QKEIDAMLAEAGIEG---SK--V 368 (458)
T ss_dssp TTCEEEEEEC---------HHHHHHHHHHHH-TTTCEEEEEEESSCC----HHH---HHHHHHHHHTTTCCS---CE--E
T ss_pred CCCEEEEEcC---------chHHHHHHHHHH-HCCCEEEEEEeCCCC----HHH---HHHHHHHHHhcCCCC---CE--E
Confidence 4578999888 345666665564 789887776654422 122 233334444433 33 22 2
Q ss_pred cccCCchHHHHHHHHHHcCCcEEEEcccC
Q 028129 161 GEGSSKPTAIIGDVADELNLDLVIISMEA 189 (213)
Q Consensus 161 ~~G~~~p~~~Il~~A~e~~aDLIVmG~~g 189 (213)
..+. | ..++.+.+++.++|||+-+.++
T Consensus 369 ~~~~-d-~~~l~~~i~~~~pDl~ig~~~~ 395 (458)
T 1mio_B 369 KVEG-D-FFDVHQWIKNEGVDLLISNTYG 395 (458)
T ss_dssp EESC-B-HHHHHHHHHHSCCSEEEESGGG
T ss_pred EECC-C-HHHHHHHHHhcCCCEEEeCcch
Confidence 2343 3 4568888999999999976654
No 247
>3ia7_A CALG4; glycosysltransferase, calicheamicin, enediyne, transf; 1.91A {Micromonospora echinospora}
Probab=30.16 E-value=2.3e+02 Score=23.18 Aligned_cols=102 Identities=17% Similarity=0.159 Sum_probs=57.9
Q ss_pred CCcEEEEeeCCCCCCCHHHHHHHHHHHHHHhhcCCEEEEEEEeCCCCCChhhHHHHHHHHHHHHHhCCCCceeEEEEEc-
Q 028129 83 FKHLLLPITDQNPYLSEGTRQAAATTAALAKKYGADITVVVIDERQKESLPEHENRLSSIRWHLSEGGFQEFRLLERLG- 161 (213)
Q Consensus 83 ~k~ILV~vD~~~~~~S~~s~~Al~~A~~LA~~~~a~L~ll~V~~~~~~~~~~~~~~l~~~~~~l~~~g~~~~~v~~~v~- 161 (213)
+.+||+.... +..+....+..+..|.++ |-+++++.-. .. .......|+. +...-.
T Consensus 4 M~~il~~~~~----~~Ghv~~~~~La~~L~~~-GheV~v~~~~--------~~-------~~~~~~~G~~---~~~~~~~ 60 (402)
T 3ia7_A 4 QRHILFANVQ----GHGHVYPSLGLVSELARR-GHRITYVTTP--------LF-------ADEVKAAGAE---VVLYKSE 60 (402)
T ss_dssp CCEEEEECCS----SHHHHHHHHHHHHHHHHT-TCEEEEEECH--------HH-------HHHHHHTTCE---EEECCCG
T ss_pred CCEEEEEeCC----CCcccccHHHHHHHHHhC-CCEEEEEcCH--------HH-------HHHHHHcCCE---EEecccc
Confidence 4578887773 456677777778777664 7788876521 11 1122334554 221100
Q ss_pred ----------ccCC--------------chHHHHHHHHHHcCCcEEEEcccCCCCCCchHHHHHhcCCCcEEEE
Q 028129 162 ----------EGSS--------------KPTAIIGDVADELNLDLVIISMEAIHSKHVDANLLAEFIPCPVLLL 211 (213)
Q Consensus 162 ----------~G~~--------------~p~~~Il~~A~e~~aDLIVmG~~g~~~~Gs~~~~vl~~a~cPVLvV 211 (213)
.+.. .....+.++.++.++|+||..+. .......+++...+|++.+
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pD~Vi~d~~----~~~~~~~aA~~~giP~v~~ 130 (402)
T 3ia7_A 61 FDTFHVPEVVKQEDAETQLHLVYVRENVAILRAAEEALGDNPPDLVVYDVF----PFIAGRLLAARWDRPAVRL 130 (402)
T ss_dssp GGTSSSSSSSCCTTHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSEEEEEST----THHHHHHHHHHHTCCEEEE
T ss_pred cccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhccCCCEEEECch----HHHHHHHHHHhhCCCEEEE
Confidence 0000 01356777888889999997431 2333455577788887654
No 248
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=29.80 E-value=2.2e+02 Score=22.96 Aligned_cols=17 Identities=18% Similarity=-0.031 Sum_probs=8.2
Q ss_pred HHHHHHHcCCcEEEEcc
Q 028129 171 IGDVADELNLDLVIISM 187 (213)
Q Consensus 171 Il~~A~e~~aDLIVmG~ 187 (213)
+++...+.++|-||+..
T Consensus 110 ~~~~l~~~~vdGiIi~~ 126 (339)
T 3h5o_A 110 LLRAYLQHRPDGVLITG 126 (339)
T ss_dssp HHHHHHTTCCSEEEEEC
T ss_pred HHHHHHcCCCCEEEEeC
Confidence 34444445566555533
No 249
>3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, struc genomics, center for structural genomics of infectious DISE csgid; 2.05A {Francisella tularensis subsp}
Probab=29.78 E-value=1.2e+02 Score=24.53 Aligned_cols=44 Identities=11% Similarity=0.094 Sum_probs=26.0
Q ss_pred HHHHHHHHHHhCCCCceeEEEEEcccCCchHHHHHHHHHHcCCcEEEEcc
Q 028129 138 RLSSIRWHLSEGGFQEFRLLERLGEGSSKPTAIIGDVADELNLDLVIISM 187 (213)
Q Consensus 138 ~l~~~~~~l~~~g~~~~~v~~~v~~G~~~p~~~Il~~A~e~~aDLIVmG~ 187 (213)
.+.++++...+.|.. +...+..|- ++ +. +..+.+.++|.+|+|+
T Consensus 181 KI~~lr~~~~~~~~~---~~I~VDGGI-~~-~t-i~~~~~aGAD~~V~GS 224 (246)
T 3inp_A 181 KAKEISKWISSTDRD---ILLEIDGGV-NP-YN-IAEIAVCGVNAFVAGS 224 (246)
T ss_dssp HHHHHHHHHHHHTSC---CEEEEESSC-CT-TT-HHHHHTTTCCEEEESH
T ss_pred HHHHHHHHHHhcCCC---eeEEEECCc-CH-HH-HHHHHHcCCCEEEEeh
Confidence 344444455555554 444455564 32 33 4445677999999997
No 250
>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*
Probab=29.74 E-value=2.1e+02 Score=22.73 Aligned_cols=21 Identities=10% Similarity=0.023 Sum_probs=13.3
Q ss_pred HHHHHHHHHHcCCcEEEEccc
Q 028129 168 TAIIGDVADELNLDLVIISME 188 (213)
Q Consensus 168 ~~~Il~~A~e~~aDLIVmG~~ 188 (213)
....++.+.+.++=+|+++..
T Consensus 73 ~~~~~~~~~~~giPvV~~~~~ 93 (330)
T 3uug_A 73 LSDVLKQAGEQGIKVIAYDRL 93 (330)
T ss_dssp GHHHHHHHHHTTCEEEEESSC
T ss_pred HHHHHHHHHHCCCCEEEECCC
Confidence 345566666667777777664
No 251
>1vr6_A Phospho-2-dehydro-3-deoxyheptonate aldolase; TM0343, structural genomics, joint center for STRU genomics, JCSG, protein structure initiative; 1.92A {Thermotoga maritima} SCOP: c.1.10.4 PDB: 1rzm_A* 3pg9_A* 3pg8_A*
Probab=29.55 E-value=1.7e+02 Score=25.08 Aligned_cols=97 Identities=16% Similarity=0.048 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHhhcCCEEEEEEEeCCCC--CChh-hHHHHHHHHHHHHHhCCCCceeEEEEEcccCCchHHHHHHHHHH
Q 028129 101 TRQAAATTAALAKKYGADITVVVIDERQK--ESLP-EHENRLSSIRWHLSEGGFQEFRLLERLGEGSSKPTAIIGDVADE 177 (213)
Q Consensus 101 s~~Al~~A~~LA~~~~a~L~ll~V~~~~~--~~~~-~~~~~l~~~~~~l~~~g~~~~~v~~~v~~G~~~p~~~Il~~A~e 177 (213)
-+.++++|..+ ++.|+++.-+..+.+.. .++. -.++.+..+++...+.|+. +...+..- .-++++.+
T Consensus 119 ~e~a~~~a~~~-k~aGa~~vr~q~fKprTs~~~f~glg~egl~~l~~~~~e~Gl~---~~te~~d~------~~~~~l~~ 188 (350)
T 1vr6_A 119 REMLMETAHFL-SELGVKVLRGGAYKPRTSPYSFQGLGEKGLEYLREAADKYGMY---VVTEALGE------DDLPKVAE 188 (350)
T ss_dssp HHHHHHHHHHH-HHTTCCEEECBSCCCCCSTTSCCCCTHHHHHHHHHHHHHHTCE---EEEECSSG------GGHHHHHH
T ss_pred HHHHHHHHHHH-HHcCCCeeeeeEEeCCCChHhhcCCCHHHHHHHHHHHHHcCCc---EEEEeCCH------HHHHHHHH
Confidence 44566666554 45677765444444321 1111 1234455666667777888 66555322 22355555
Q ss_pred cCCcEEEEcccCCCCCCchHHHHHhcCCCcEEE
Q 028129 178 LNLDLVIISMEAIHSKHVDANLLAEFIPCPVLL 210 (213)
Q Consensus 178 ~~aDLIVmG~~g~~~~Gs~~~~vl~~a~cPVLv 210 (213)
+ +|++=+|++.- .-..-..-+.+..+||++
T Consensus 189 ~-vd~lkIgAr~~--~n~~LL~~va~~~kPVil 218 (350)
T 1vr6_A 189 Y-ADIIQIGARNA--QNFRLLSKAGSYNKPVLL 218 (350)
T ss_dssp H-CSEEEECGGGT--TCHHHHHHHHTTCSCEEE
T ss_pred h-CCEEEECcccc--cCHHHHHHHHccCCcEEE
Confidence 6 89999999865 222212225578899886
No 252
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=29.46 E-value=2.1e+02 Score=22.50 Aligned_cols=92 Identities=4% Similarity=-0.054 Sum_probs=42.4
Q ss_pred CcEEEEeeCCCCCCCHHHHHHHHHHHHHHhhcCCEEEEEEEeCCCCCChhhHHHHHHHHHHHHHhCCCCceeEEEEEccc
Q 028129 84 KHLLLPITDQNPYLSEGTRQAAATTAALAKKYGADITVVVIDERQKESLPEHENRLSSIRWHLSEGGFQEFRLLERLGEG 163 (213)
Q Consensus 84 k~ILV~vD~~~~~~S~~s~~Al~~A~~LA~~~~a~L~ll~V~~~~~~~~~~~~~~l~~~~~~l~~~g~~~~~v~~~v~~G 163 (213)
++|.+-+... .++.-...++...+.+++.|.++.++..... +.+...+.+ +.+...++. -.......
T Consensus 5 ~~I~~i~~~~---~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~------~~~~~~~~i-~~l~~~~vd---giIi~~~~ 71 (305)
T 3g1w_A 5 ETYMMITFQS---GMDYWKRCLKGFEDAAQALNVTVEYRGAAQY------DIQEQITVL-EQAIAKNPA---GIAISAID 71 (305)
T ss_dssp CEEEEEESST---TSTHHHHHHHHHHHHHHHHTCEEEEEECSSS------CHHHHHHHH-HHHHHHCCS---EEEECCSS
T ss_pred ceEEEEEccC---CChHHHHHHHHHHHHHHHcCCEEEEeCCCcC------CHHHHHHHH-HHHHHhCCC---EEEEcCCC
Confidence 4555555421 2344445555555566777776655321111 111222222 223333555 22111111
Q ss_pred CCchHHHHHHHHHHcCCcEEEEcccC
Q 028129 164 SSKPTAIIGDVADELNLDLVIISMEA 189 (213)
Q Consensus 164 ~~~p~~~Il~~A~e~~aDLIVmG~~g 189 (213)
. +.....++.+.+.++=+|+++...
T Consensus 72 ~-~~~~~~~~~~~~~~iPvV~~~~~~ 96 (305)
T 3g1w_A 72 P-VELTDTINKAVDAGIPIVLFDSGA 96 (305)
T ss_dssp T-TTTHHHHHHHHHTTCCEEEESSCC
T ss_pred H-HHHHHHHHHHHHCCCcEEEECCCC
Confidence 1 122456666777778888887643
No 253
>3bbl_A Regulatory protein of LACI family; protein structure initiative II, PSI-II, NYSGXRC, transcript regulator, periplasmic binding protein; 2.35A {Chloroflexus aggregans}
Probab=29.24 E-value=2e+02 Score=22.41 Aligned_cols=19 Identities=5% Similarity=-0.108 Sum_probs=12.6
Q ss_pred HHHHHHHHcCCcEEEEccc
Q 028129 170 IIGDVADELNLDLVIISME 188 (213)
Q Consensus 170 ~Il~~A~e~~aDLIVmG~~ 188 (213)
..++.+.+.++=+|+++..
T Consensus 78 ~~~~~l~~~~iPvV~~~~~ 96 (287)
T 3bbl_A 78 PRVQFLLKQKFPFVAFGRS 96 (287)
T ss_dssp HHHHHHHHTTCCEEEESCC
T ss_pred HHHHHHHhcCCCEEEECCc
Confidence 4555566667777887764
No 254
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=29.14 E-value=2.3e+02 Score=23.04 Aligned_cols=68 Identities=16% Similarity=0.163 Sum_probs=29.3
Q ss_pred HHHHHHHHHHhCCCCceeEEEEEcccCCchHHHHHHHHHHcCCcEEEEcccCCCCCCchHHHHHhcCCCcEEEE
Q 028129 138 RLSSIRWHLSEGGFQEFRLLERLGEGSSKPTAIIGDVADELNLDLVIISMEAIHSKHVDANLLAEFIPCPVLLL 211 (213)
Q Consensus 138 ~l~~~~~~l~~~g~~~~~v~~~v~~G~~~p~~~Il~~A~e~~aDLIVmG~~g~~~~Gs~~~~vl~~a~cPVLvV 211 (213)
.++.+.+.+.+.|+. +......++......+++...+.++|-||+..... . ......+....+||+++
T Consensus 88 ~~~gi~~~a~~~g~~---~~~~~~~~~~~~~~~~~~~l~~~~vdGiI~~~~~~--~-~~~~~~l~~~~iPvV~i 155 (355)
T 3e3m_A 88 TAQSLTDVLEQGGLQ---LLLGYTAYSPEREEQLVETMLRRRPEAMVLSYDGH--T-EQTIRLLQRASIPIVEI 155 (355)
T ss_dssp HHHHHHHHHHHTTCE---EEEEECTTCHHHHHHHHHHHHHTCCSEEEEECSCC--C-HHHHHHHHHCCSCEEEE
T ss_pred HHHHHHHHHHHCCCE---EEEEeCCCChHHHHHHHHHHHhCCCCEEEEeCCCC--C-HHHHHHHHhCCCCEEEE
Confidence 344444455555555 43332222201122344445555666666543221 1 12222345566666654
No 255
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=28.91 E-value=1.5e+02 Score=20.79 Aligned_cols=70 Identities=16% Similarity=0.274 Sum_probs=39.3
Q ss_pred EEEEeeCCCCCCCHHHHHHHHHHHHHHhhcCCEEEEEEEeCCCCCChhhHHHHHHHHHHHHHhCCCCceeEEEEEcccCC
Q 028129 86 LLLPITDQNPYLSEGTRQAAATTAALAKKYGADITVVVIDERQKESLPEHENRLSSIRWHLSEGGFQEFRLLERLGEGSS 165 (213)
Q Consensus 86 ILV~vD~~~~~~S~~s~~Al~~A~~LA~~~~a~L~ll~V~~~~~~~~~~~~~~l~~~~~~l~~~g~~~~~v~~~v~~G~~ 165 (213)
+++.+| ..+-+++|+++... .|+.+-++.-+.. +..+++........|++ +.... .-+
T Consensus 54 vvvvvd-----dkewaekairfvks----lgaqvliiiydqd--------qnrleefsrevrrrgfe---vrtvt-spd- 111 (134)
T 2l69_A 54 VVVVVD-----DKEWAEKAIRFVKS----LGAQVLIIIYDQD--------QNRLEEFSREVRRRGFE---VRTVT-SPD- 111 (134)
T ss_dssp EEEECS-----SHHHHHHHHHHHHH----HCCCCEEEEECSC--------HHHHHHHHHHHHHTTCC---EEEES-SHH-
T ss_pred EEEEEc-----cHHHHHHHHHHHHh----cCCeEEEEEEeCc--------hhHHHHHHHHHHhcCce---EEEec-ChH-
Confidence 455566 36667777776644 4666544433321 24566666677788988 65433 222
Q ss_pred chHHHHHHHHHH
Q 028129 166 KPTAIIGDVADE 177 (213)
Q Consensus 166 ~p~~~Il~~A~e 177 (213)
|-...+-+..++
T Consensus 112 dfkkslerlire 123 (134)
T 2l69_A 112 DFKKSLERLIRE 123 (134)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 344455555555
No 256
>3iwt_A 178AA long hypothetical molybdenum cofactor biosy protein B; biosynthesis, structural genomics, UNKN function, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii}
Probab=28.15 E-value=91 Score=23.45 Aligned_cols=40 Identities=18% Similarity=0.096 Sum_probs=25.3
Q ss_pred HHHHHHHhCCCCceeEEEEEcccCCchHHHHHHHH----HHcCCcEEEE
Q 028129 141 SIRWHLSEGGFQEFRLLERLGEGSSKPTAIIGDVA----DELNLDLVII 185 (213)
Q Consensus 141 ~~~~~l~~~g~~~~~v~~~v~~G~~~p~~~Il~~A----~e~~aDLIVm 185 (213)
-+.+.+.+.|++ +......+| ++ +.|.+.. ...++|+||.
T Consensus 44 ~L~~~L~~~G~~---v~~~~iV~D-d~-~~i~~al~~~~a~~~~DlVit 87 (178)
T 3iwt_A 44 IIKQLLIENGHK---IIGYSLVPD-DK-IKILKAFTDALSIDEVDVIIS 87 (178)
T ss_dssp HHHHHHHHTTCE---EEEEEEECS-CH-HHHHHHHHHHHTCTTCCEEEE
T ss_pred HHHHHHHHCCCE---EEEEEEeCC-CH-HHHHHHHHHHHhcCCCCEEEe
Confidence 345567888988 766655676 44 4444332 3357899998
No 257
>1qv9_A F420-dependent methylenetetrahydromethanopterin dehydrogenase; monomer: alpha/beta domain, helix bundle, trimer of dimers, oxidoreductase; HET: MSE; 1.54A {Methanopyrus kandleri} SCOP: c.127.1.1 PDB: 1u6i_A 1u6j_A 1u6k_A* 3iqe_A* 3iqf_A* 3iqz_A*
Probab=27.88 E-value=88 Score=25.89 Aligned_cols=44 Identities=11% Similarity=0.202 Sum_probs=0.0
Q ss_pred chHHHHHHHHHHcCCcEEEEcccCCCCC---CchHHHHHhcCCCcEEEE
Q 028129 166 KPTAIIGDVADELNLDLVIISMEAIHSK---HVDANLLAEFIPCPVLLL 211 (213)
Q Consensus 166 ~p~~~Il~~A~e~~aDLIVmG~~g~~~~---Gs~~~~vl~~a~cPVLvV 211 (213)
+....+++.+++++.|++|+.+... . -..+..++.....|.+++
T Consensus 51 ~~~~~~~~~~~~~~pDfvI~isPN~--a~PGP~~ARE~l~~~~iP~IvI 97 (283)
T 1qv9_A 51 AAVEMALDIAEDFEPDFIVYGGPNP--AAPGPSKAREMLADSEYPAVII 97 (283)
T ss_dssp HHHHHHHHHHHHHCCSEEEEECSCT--TSHHHHHHHHHHHTSSSCEEEE
T ss_pred HHHHHhhhhhhhcCCCEEEEECCCC--CCCCchHHHHHHHhCCCCEEEE
No 258
>1n8f_A DAHP synthetase; (beta/alpha)8 barrel, metal binding protein; HET: PEP; 1.75A {Escherichia coli} SCOP: c.1.10.4 PDB: 1gg1_A 1kfl_A* 1qr7_A*
Probab=27.60 E-value=3e+02 Score=23.71 Aligned_cols=112 Identities=15% Similarity=0.169 Sum_probs=65.4
Q ss_pred CcEEEEeeCCCCCCCHHHHHHHHHHHHHHhh---cCCEEEEE-EE--eCCC----CCCh---h------hHHHHHHHHHH
Q 028129 84 KHLLLPITDQNPYLSEGTRQAAATTAALAKK---YGADITVV-VI--DERQ----KESL---P------EHENRLSSIRW 144 (213)
Q Consensus 84 k~ILV~vD~~~~~~S~~s~~Al~~A~~LA~~---~~a~L~ll-~V--~~~~----~~~~---~------~~~~~l~~~~~ 144 (213)
++.+|-+.+- --+.-+.++++|..|++. .+.+|.++ -+ +++. +.++ | +.++-+..+++
T Consensus 52 ~rllvIaGPC---sie~~e~aleyA~~L~~~~~~l~d~l~ivmR~yfeKPRTs~g~kGl~~dP~ld~s~~i~~GL~ilr~ 128 (350)
T 1n8f_A 52 DRLLVVIGPC---SIHDPVAAKEYATRLLALREELKDELEIVMRVYFEKPRTTVGWKGLINDPHMDNSFQINDGLRIARK 128 (350)
T ss_dssp CCEEEEEECS---SCCCHHHHHHHHHHHHHHHHHTTTTEEEEEECCCCCCCSSSSCCCTTTCTTSSSCCCHHHHHHHHHH
T ss_pred CceEEEEeCC---cCCCHHHHHHHHHHHHHHHHhhccCeEEEEEeccccCcCCcCcCCCCCCCCccccccHHHHHHHHHH
Confidence 4577767641 234456788888876653 44456655 22 3321 1111 1 23444555555
Q ss_pred H---HHhCCCCceeEEEEEcccCCchHHHHHHHHHHcCCcEEEEcccCCCCCCchHHHHHhcCCCcEEE
Q 028129 145 H---LSEGGFQEFRLLERLGEGSSKPTAIIGDVADELNLDLVIISMEAIHSKHVDANLLAEFIPCPVLL 210 (213)
Q Consensus 145 ~---l~~~g~~~~~v~~~v~~G~~~p~~~Il~~A~e~~aDLIVmG~~g~~~~Gs~~~~vl~~a~cPVLv 210 (213)
. ..+.|+. +...+.+-. -.+|+.+ -+|++-+|+|.- .--....++...+|||.+
T Consensus 129 ll~~~~e~GlP---v~TEvld~~------~~~~vad-~vd~~qIGAR~~--esq~hr~~asg~~~PVg~ 185 (350)
T 1n8f_A 129 LLLDINDSGLP---AAGEFLDMI------TPQYLAD-LMSWGAIGARTT--ESQVHRELASGLSCPVGF 185 (350)
T ss_dssp HHHHHHHTTCC---EEEECCCSS------THHHHGG-GCSEEEECTTTT--TCHHHHHHHHTCSSCEEE
T ss_pred HHHHHHHhCCc---eEEeecCcc------cHHHHhh-cCcEEEECCccc--cCHHHHHHHhcCCCeEEE
Confidence 4 6778988 776664332 2344444 389999999875 323444558889999986
No 259
>3uhj_A Probable glycerol dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.34A {Sinorhizobium meliloti}
Probab=27.57 E-value=88 Score=27.07 Aligned_cols=87 Identities=17% Similarity=0.105 Sum_probs=38.5
Q ss_pred CcEEEEeeCCCCCCCHHHHHHHHHHHHHHhhcCCEEEEEEEeCCCCCChhhHHHHHHHHHHHHHhCCCCceeEEEEEccc
Q 028129 84 KHLLLPITDQNPYLSEGTRQAAATTAALAKKYGADITVVVIDERQKESLPEHENRLSSIRWHLSEGGFQEFRLLERLGEG 163 (213)
Q Consensus 84 k~ILV~vD~~~~~~S~~s~~Al~~A~~LA~~~~a~L~ll~V~~~~~~~~~~~~~~l~~~~~~l~~~g~~~~~v~~~v~~G 163 (213)
+++||-+|. .... ...+...+..+. +.++ ++...... ... +..+++.+.+.+.+.+ +..-+..|
T Consensus 53 ~r~liVtd~----~~~~--~~~~~v~~~L~~-g~~~-~~~~~~~~-p~~----~~v~~~~~~~~~~~~d---~IIavGGG 116 (387)
T 3uhj_A 53 KRALVLIDR----VLFD--ALSERIGKSCGD-SLDI-RFERFGGE-CCT----SEIERVRKVAIEHGSD---ILVGVGGG 116 (387)
T ss_dssp SEEEEEECT----TTHH--HHHHHC-------CCEE-EEEECCSS-CSH----HHHHHHHHHHHHHTCS---EEEEESSH
T ss_pred CEEEEEECc----hHHH--HHHHHHHHHHHc-CCCe-EEEEcCCC-CCH----HHHHHHHHHHhhcCCC---EEEEeCCc
Confidence 788888884 2322 244444443444 5555 33222221 111 2233444445555665 66556444
Q ss_pred CCchHHHHHHHHHHcCCcEEEEccc
Q 028129 164 SSKPTAIIGDVADELNLDLVIISME 188 (213)
Q Consensus 164 ~~~p~~~Il~~A~e~~aDLIVmG~~ 188 (213)
. +-+.---.|-..+..+|.+-+-
T Consensus 117 s--~~D~AK~iA~~~~~p~i~IPTT 139 (387)
T 3uhj_A 117 K--TADTAKIVAIDTGARIVIAPTI 139 (387)
T ss_dssp H--HHHHHHHHHHHTTCEEEECCSS
T ss_pred H--HHHHHHHHHHhcCCCEEEecCc
Confidence 2 3322222233456778887765
No 260
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=27.50 E-value=2.2e+02 Score=22.34 Aligned_cols=21 Identities=14% Similarity=0.243 Sum_probs=14.2
Q ss_pred HHHHHHHHHcCCcEEEEcccC
Q 028129 169 AIIGDVADELNLDLVIISMEA 189 (213)
Q Consensus 169 ~~Il~~A~e~~aDLIVmG~~g 189 (213)
...++.+.+.++=+|.++...
T Consensus 76 ~~~~~~~~~~giPvV~~~~~~ 96 (297)
T 3rot_A 76 SKSLQRANKLNIPVIAVDTRP 96 (297)
T ss_dssp HHHHHHHHHHTCCEEEESCCC
T ss_pred HHHHHHHHHCCCCEEEEcCCC
Confidence 556666666777777777643
No 261
>4f2d_A L-arabinose isomerase; structural genomics, PSI-1, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; HET: MSE RB0; 2.30A {Escherichia coli} PDB: 2ajt_A 2hxg_A
Probab=27.25 E-value=1.5e+02 Score=26.65 Aligned_cols=42 Identities=12% Similarity=-0.029 Sum_probs=25.7
Q ss_pred HHHHHHH-HHcCCcEEEEcccCCCCCCchHHHHHhcCCCcEEEE
Q 028129 169 AIIGDVA-DELNLDLVIISMEAIHSKHVDANLLAEFIPCPVLLL 211 (213)
Q Consensus 169 ~~Il~~A-~e~~aDLIVmG~~g~~~~Gs~~~~vl~~a~cPVLvV 211 (213)
..+++.+ ++.++|.||+=.+.- .....-..+++..++|||+.
T Consensus 61 ~~~~~~~n~~~~vdgvi~~~~TF-s~a~~~i~~l~~l~~PvL~~ 103 (500)
T 4f2d_A 61 TAICRDANYDDRCAGLVVWLHTF-SPAKMWINGLTMLNKPLLQF 103 (500)
T ss_dssp HHHHHHHHHCTTEEEEEEECCSC-CCTHHHHHHHHHCCSCEEEE
T ss_pred HHHHHHhccccCCcEEEEeCCcC-ccHHHHHHHHHhcCCCEEEE
Confidence 3444445 455788888877653 11223334578888999885
No 262
>3hly_A Flavodoxin-like domain; Q5MZP6_SYNP6, flavoprotein, DFA1, SNR135D, NESG, structural genomics, PSI-2; 2.40A {Synechococcus elongatus pcc 6301}
Probab=26.94 E-value=1.9e+02 Score=21.16 Aligned_cols=11 Identities=0% Similarity=-0.185 Sum_probs=5.5
Q ss_pred CcEEEEcccCC
Q 028129 180 LDLVIISMEAI 190 (213)
Q Consensus 180 aDLIVmG~~g~ 190 (213)
--..+.|+.|.
T Consensus 83 k~v~~fgs~g~ 93 (161)
T 3hly_A 83 QAIGLFDSYGG 93 (161)
T ss_dssp SEEEEECCCCS
T ss_pred CEEEEEEcCCC
Confidence 34455555543
No 263
>2e0i_A 432AA long hypothetical deoxyribodipyrimidine PHO; photolyase, FAD, DNA repair, lyase; HET: FAD; 2.80A {Sulfolobus tokodaii}
Probab=26.72 E-value=2e+02 Score=25.27 Aligned_cols=74 Identities=14% Similarity=0.093 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHhhcCCEEEEEEEeCCCC------CChh---hHHHHHHHHHHHHHhCCCCceeEEEEEcccCCchHHHH
Q 028129 101 TRQAAATTAALAKKYGADITVVVIDERQK------ESLP---EHENRLSSIRWHLSEGGFQEFRLLERLGEGSSKPTAII 171 (213)
Q Consensus 101 s~~Al~~A~~LA~~~~a~L~ll~V~~~~~------~~~~---~~~~~l~~~~~~l~~~g~~~~~v~~~v~~G~~~p~~~I 171 (213)
...||..|+. .+..|.+|.+.++.. .+.. -.-+.|.++.+.+.+.|.. +.. ..|+ +.+.|
T Consensus 15 DN~aL~~A~~----~~~~v~~vfi~dp~~~~~~~~~~~~r~~Fl~~sL~~L~~~L~~~G~~---L~v--~~g~--~~~~l 83 (440)
T 2e0i_A 15 DNTGLNYALS----ECDRVIPVFIADPRQLINNPYKSEFAVSFMINSLLELDDELRKKGSR---LNV--FFGE--AEKVV 83 (440)
T ss_dssp SCHHHHHHHH----HSSEEEEEEEECHHHHSSCTTCCHHHHHHHHHHHHHHHHHHHTTTCC---CEE--EESC--HHHHH
T ss_pred hhHHHHHHHh----cCCCEEEEEEeChhhhccCCcCCHHHHHHHHHHHHHHHHHHHHcCCe---EEE--EECC--HHHHH
Confidence 3456766655 255787776655321 1211 1234456666778888887 543 3586 99999
Q ss_pred HHHHHHcCCcEEEEcc
Q 028129 172 GDVADELNLDLVIISM 187 (213)
Q Consensus 172 l~~A~e~~aDLIVmG~ 187 (213)
.++++ +++.|+.-.
T Consensus 84 ~~l~~--~~~~v~~~~ 97 (440)
T 2e0i_A 84 SRFFN--KVDAIYVNE 97 (440)
T ss_dssp HHHCT--TCSEEEEEC
T ss_pred HHHHc--CCCEEEEec
Confidence 99998 899988844
No 264
>3qjg_A Epidermin biosynthesis protein EPID; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; HET: FMN; 2.04A {Staphylococcus aureus} SCOP: c.34.1.0
Probab=26.23 E-value=57 Score=25.17 Aligned_cols=37 Identities=11% Similarity=0.023 Sum_probs=28.9
Q ss_pred CCCcEEEEeeCCCCCCCHHHHHHHHHHHHHHhhcCCEEEEEEE
Q 028129 82 NFKHLLLPITDQNPYLSEGTRQAAATTAALAKKYGADITVVVI 124 (213)
Q Consensus 82 ~~k~ILV~vD~~~~~~S~~s~~Al~~A~~LA~~~~a~L~ll~V 124 (213)
|-|+|++++. |+-...++++....|.+ .|.+++++.-
T Consensus 4 m~k~IllgvT-----Gs~aa~k~~~ll~~L~~-~g~~V~vv~T 40 (175)
T 3qjg_A 4 MGENVLICLC-----GSVNSINISHYIIELKS-KFDEVNVIAS 40 (175)
T ss_dssp -CCEEEEEEC-----SSGGGGGHHHHHHHHTT-TCSEEEEEEC
T ss_pred CCCEEEEEEe-----CHHHHHHHHHHHHHHHH-CCCEEEEEEC
Confidence 3489999999 89888888888777755 5888887754
No 265
>1sbz_A Probable aromatic acid decarboxylase; FMN binding, PAD1, UBIX, montreal-kingston bacterial structu genomics initiative, BSGI; HET: FMN; 2.00A {Escherichia coli} SCOP: c.34.1.1
Probab=25.90 E-value=76 Score=24.96 Aligned_cols=36 Identities=19% Similarity=0.210 Sum_probs=28.8
Q ss_pred CcEEEEeeCCCCCCCHHHHHHHHHHHHHHhhcCCEEEEEEE
Q 028129 84 KHLLLPITDQNPYLSEGTRQAAATTAALAKKYGADITVVVI 124 (213)
Q Consensus 84 k~ILV~vD~~~~~~S~~s~~Al~~A~~LA~~~~a~L~ll~V 124 (213)
++|++++. |+-.+.++++....|.+..|.+++++.-
T Consensus 1 ~~IllgvT-----Gsiaa~k~~~ll~~L~~~~g~~V~vv~T 36 (197)
T 1sbz_A 1 MKLIVGMT-----GATGAPLGVALLQALREMPNVETHLVMS 36 (197)
T ss_dssp CEEEEEEC-----SSSCHHHHHHHHHHHHTCTTCEEEEEEC
T ss_pred CEEEEEEe-----ChHHHHHHHHHHHHHHhccCCEEEEEEC
Confidence 37999999 8888889988888886544888887753
No 266
>2c5s_A THII, probable thiamine biosynthesis protein THII; RNA-binding protein, RNA binding protein, tRNA modification, 4-thiouridine synthase; HET: AMP; 2.5A {Bacillus anthracis} SCOP: c.26.2.6 d.308.1.1
Probab=25.70 E-value=3.2e+02 Score=23.54 Aligned_cols=36 Identities=17% Similarity=0.114 Sum_probs=26.0
Q ss_pred CCcEEEEeeCCCCCCCHHHHHHHHHHHHHHhhcCCEEEEEEEeCC
Q 028129 83 FKHLLLPITDQNPYLSEGTRQAAATTAALAKKYGADITVVVIDER 127 (213)
Q Consensus 83 ~k~ILV~vD~~~~~~S~~s~~Al~~A~~LA~~~~a~L~ll~V~~~ 127 (213)
-.++++++. |...|.-++..+. +.|.++..++++..
T Consensus 187 ~~kvlvalS-----GGvDS~vll~ll~----~~G~~v~av~v~~~ 222 (413)
T 2c5s_A 187 GGKVMVLLS-----GGIDSPVAAYLTM----KRGVSVEAVHFHSP 222 (413)
T ss_dssp TEEEEEECC-----SSSHHHHHHHHHH----HBTEEEEEEEEECT
T ss_pred CCeEEEEeC-----CCChHHHHHHHHH----HcCCcEEEEEEeCC
Confidence 457999999 7777766665543 34788988888864
No 267
>2p0y_A Hypothetical protein LP_0780; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 3.00A {Lactobacillus plantarum}
Probab=25.34 E-value=60 Score=27.96 Aligned_cols=42 Identities=12% Similarity=0.123 Sum_probs=29.0
Q ss_pred hHHHHHHHHHHcCCcEEEEcccCCCCCCchHHHH-------HhcCCCcEEEE
Q 028129 167 PTAIIGDVADELNLDLVIISMEAIHSKHVDANLL-------AEFIPCPVLLL 211 (213)
Q Consensus 167 p~~~Il~~A~e~~aDLIVmG~~g~~~~Gs~~~~v-------l~~a~cPVLvV 211 (213)
+..+.++..++ +|+||+|--....+ +-..++ +++++||++.|
T Consensus 178 a~p~al~AI~~--AD~IvlgPGSlyTS-I~P~Llv~gi~~Ai~~s~A~kV~V 226 (341)
T 2p0y_A 178 AVQPVIDAIMA--ADQIVLGPGSLFTS-ILPNLTIGNIGRAVCESDAEVVYI 226 (341)
T ss_dssp CCHHHHHHHHH--CSEEEECSSCCCCC-CHHHHSSHHHHHHHHHCSSEEEEE
T ss_pred CCHHHHHHHHh--CCEEEECCCCCHHH-hcccccCccHHHHHHhCCCCEEEE
Confidence 55677787777 99999998664222 222222 78889998876
No 268
>4f3r_A Phosphopantetheine adenylyltransferase; phosphopantetheine adenylyltranferase; 2.25A {Coxiella burnetii}
Probab=25.16 E-value=2.2e+02 Score=21.32 Aligned_cols=20 Identities=15% Similarity=0.360 Sum_probs=16.4
Q ss_pred HHHHHHHcCCcEEEEcccCC
Q 028129 171 IGDVADELNLDLVIISMEAI 190 (213)
Q Consensus 171 Il~~A~e~~aDLIVmG~~g~ 190 (213)
..+++++.++|.+|.|.+.-
T Consensus 76 ~~~~~~~~~~~~~v~G~r~~ 95 (162)
T 4f3r_A 76 LVDFAKTHQANFILRGLRAV 95 (162)
T ss_dssp HHHHHHHTTCCEEEEEECSH
T ss_pred HHHHHHHcCCCEEEECCCch
Confidence 45788999999999997643
No 269
>1vs1_A 3-deoxy-7-phosphoheptulonate synthase; (beta/alpha)8 barrel, transferase; HET: PEP; 2.30A {Aeropyrum pernix}
Probab=24.81 E-value=1.5e+02 Score=24.57 Aligned_cols=98 Identities=15% Similarity=0.088 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHHhhcCCEEEEEEEeCCCC--CChh-hHHHHHHHHHHHHHhCCCCceeEEEEEcccCCchHHHHHHHHH
Q 028129 100 GTRQAAATTAALAKKYGADITVVVIDERQK--ESLP-EHENRLSSIRWHLSEGGFQEFRLLERLGEGSSKPTAIIGDVAD 176 (213)
Q Consensus 100 ~s~~Al~~A~~LA~~~~a~L~ll~V~~~~~--~~~~-~~~~~l~~~~~~l~~~g~~~~~v~~~v~~G~~~p~~~Il~~A~ 176 (213)
.-+.+++++..++ +.|+++.-+....+.. .++. ..++.++.+++...+.|+. +...+.. ..=++++.
T Consensus 50 ~~e~a~~~a~~~k-~~ga~~~k~~~~kprts~~~f~g~g~~gl~~l~~~~~~~Gl~---~~te~~d------~~~~~~l~ 119 (276)
T 1vs1_A 50 SWEQVREAALAVK-EAGAHMLRGGAFKPRTSPYSFQGLGLEGLKLLRRAGDEAGLP---VVTEVLD------PRHVETVS 119 (276)
T ss_dssp CHHHHHHHHHHHH-HHTCSEEECBSSCCCSSTTSCCCCTHHHHHHHHHHHHHHTCC---EEEECCC------GGGHHHHH
T ss_pred CHHHHHHHHHHHH-HhCCCEEEeEEEeCCCChhhhcCCCHHHHHHHHHHHHHcCCc---EEEecCC------HHHHHHHH
Confidence 3456666665554 4577764444443321 1111 1244456666667778998 6655532 22345556
Q ss_pred HcCCcEEEEcccCCCCCCchHHHHHhcCCCcEEE
Q 028129 177 ELNLDLVIISMEAIHSKHVDANLLAEFIPCPVLL 210 (213)
Q Consensus 177 e~~aDLIVmG~~g~~~~Gs~~~~vl~~a~cPVLv 210 (213)
+. +|.+=+|++.- .-..-..-+.+..+||++
T Consensus 120 ~~-vd~~kIgs~~~--~n~~ll~~~a~~~kPV~l 150 (276)
T 1vs1_A 120 RY-ADMLQIGARNM--QNFPLLREVGRSGKPVLL 150 (276)
T ss_dssp HH-CSEEEECGGGT--TCHHHHHHHHHHTCCEEE
T ss_pred Hh-CCeEEECcccc--cCHHHHHHHHccCCeEEE
Confidence 66 89999999865 322222235567888876
No 270
>2ppv_A Uncharacterized protein; putative phosphotransferase, structural genomics, joint CENT structural genomics, JCSG; 2.00A {Staphylococcus epidermidis}
Probab=24.75 E-value=73 Score=27.34 Aligned_cols=43 Identities=19% Similarity=0.271 Sum_probs=29.6
Q ss_pred chHHHHHHHHHHcCCcEEEEcccCCCCCCchHHHH-------HhcCCCcEEEE
Q 028129 166 KPTAIIGDVADELNLDLVIISMEAIHSKHVDANLL-------AEFIPCPVLLL 211 (213)
Q Consensus 166 ~p~~~Il~~A~e~~aDLIVmG~~g~~~~Gs~~~~v-------l~~a~cPVLvV 211 (213)
.+..+.++..++ +|+||+|--....+ +-..++ +++++||++.|
T Consensus 166 ~~~p~~l~AI~~--AD~IvlgPGS~~TS-I~P~Llv~gi~~Ai~~s~A~kV~v 215 (332)
T 2ppv_A 166 EPMNEAIEALEQ--ADLIVLGPGSLYTS-VISNLCVKGISEALLRTSAPKLYV 215 (332)
T ss_dssp CCCHHHHHHHHH--CSEEEECSSCCCCC-CHHHHTSHHHHHHHHHCCSCEEEE
T ss_pred CCCHHHHHHHHh--CCEEEECCCCCHHH-hcccccCchHHHHHHhCCCCEEEE
Confidence 356778888877 99999998664222 222222 78889998876
No 271
>3tqk_A Phospho-2-dehydro-3-deoxyheptonate aldolase; transferase; 2.30A {Francisella tularensis}
Probab=24.69 E-value=3.4e+02 Score=23.37 Aligned_cols=112 Identities=13% Similarity=0.138 Sum_probs=62.5
Q ss_pred CcEEEEeeCCCCCCCHHHHHHHHHHHHHHhh---cCCEEEE-EEE--eCCC-CCC---h---h------hHHHHHHHHHH
Q 028129 84 KHLLLPITDQNPYLSEGTRQAAATTAALAKK---YGADITV-VVI--DERQ-KES---L---P------EHENRLSSIRW 144 (213)
Q Consensus 84 k~ILV~vD~~~~~~S~~s~~Al~~A~~LA~~---~~a~L~l-l~V--~~~~-~~~---~---~------~~~~~l~~~~~ 144 (213)
++++|-+.+- --+.-+.++++|.+|+.. ...++.+ +-+ +++. ..+ + | +.++-+..+++
T Consensus 49 ~rllVIaGPC---Sied~eq~leyA~~Lk~~~~~~~d~l~~vmR~y~~KPRTs~g~kGL~nDP~ld~s~~i~~GL~~~R~ 125 (346)
T 3tqk_A 49 DRVAVVVGPC---SIHDPAAAIEYATKLKEQVKKFHKDILIIMRVYFEKPRTTIGWKGFINDPDLDNSYNINKGLRLARN 125 (346)
T ss_dssp CSEEEEEECS---SCSCHHHHHHHHHHHHHHHHHHTTTEEEEEECCCCCCCSSCSCCCTTTCTTSSSCCCHHHHHHHHHH
T ss_pred CCEEEEEecC---ccCCHHHHHHHHHHHHHHHhhhcccceEEeeecccCCCCCcCccccccCCCCCCCccHHHHHHHHHH
Confidence 4677776641 234566788888887753 2344444 333 3321 111 1 1 22333433332
Q ss_pred ---HHHhCCCCceeEEEEEcccCCchHHHHHHHHHHcCCcEEEEcccCCCCCCchHHHHHhcCCCcEEE
Q 028129 145 ---HLSEGGFQEFRLLERLGEGSSKPTAIIGDVADELNLDLVIISMEAIHSKHVDANLLAEFIPCPVLL 210 (213)
Q Consensus 145 ---~l~~~g~~~~~v~~~v~~G~~~p~~~Il~~A~e~~aDLIVmG~~g~~~~Gs~~~~vl~~a~cPVLv 210 (213)
...+.|+. +...+..-. -.+|..++ +|++-+|+|.. .--....++....|||++
T Consensus 126 ll~~~~e~GLp---iatE~ld~~------~~qyv~dl-vs~~aIGARt~--enq~hre~asg~s~PVg~ 182 (346)
T 3tqk_A 126 LLSDLTNMGLP---CATEFLDVI------TPQYFAEL-ITWGAIGARTV--ESQVHRELASGLSASIGF 182 (346)
T ss_dssp HHHHHHHTTCC---EEEECCSSS------GGGGTGGG-CSEEEECGGGT--TCHHHHHHHTTCSSEEEE
T ss_pred HHHHHHhcCCC---EEEEecCcC------CHHHHHHH-hheeeeCcccc--cCHHHHHHhcCCCCceEE
Confidence 34677888 766664322 23455443 89999999975 223344557889999986
No 272
>1xky_A Dihydrodipicolinate synthase; TIM barrel, , lysine biosynthesis;spine, lyase; 1.94A {Bacillus anthracis} SCOP: c.1.10.1 PDB: 1xl9_A 3hij_A*
Probab=24.45 E-value=3e+02 Score=22.66 Aligned_cols=46 Identities=24% Similarity=0.358 Sum_probs=29.8
Q ss_pred chHHH--HHHHHHHcCCcEEEEcccCCCCC---CchHHH--HHhcCCCcEEEE
Q 028129 166 KPTAI--IGDVADELNLDLVIISMEAIHSK---HVDANL--LAEFIPCPVLLL 211 (213)
Q Consensus 166 ~p~~~--Il~~A~e~~aDLIVmG~~g~~~~---Gs~~~~--vl~~a~cPVLvV 211 (213)
+..+. +.+.|++.++|-+++........ |+...+ |+..++.||++.
T Consensus 92 ~t~~ai~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~lPiilY 144 (301)
T 1xky_A 92 NTHASIDLTKKATEVGVDAVMLVAPYYNKPSQEGMYQHFKAIAESTPLPVMLY 144 (301)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHTCSSCEEEE
T ss_pred CHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 34444 46788999999998877543111 222222 477889999875
No 273
>1uf3_A Hypothetical protein TT1561; metallo-dependent phosphatases, structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.10A {Thermus thermophilus} SCOP: d.159.1.6
Probab=24.27 E-value=1.1e+02 Score=23.04 Aligned_cols=6 Identities=0% Similarity=-0.003 Sum_probs=2.6
Q ss_pred EEcccC
Q 028129 184 IISMEA 189 (213)
Q Consensus 184 VmG~~g 189 (213)
|.|.|.
T Consensus 69 v~GNHD 74 (228)
T 1uf3_A 69 VPGPQD 74 (228)
T ss_dssp ECCTTS
T ss_pred ECCCCC
Confidence 334443
No 274
>3tqi_A GMP synthase [glutamine-hydrolyzing]; ligase; 2.84A {Coxiella burnetii}
Probab=24.16 E-value=2e+02 Score=25.89 Aligned_cols=89 Identities=13% Similarity=0.143 Sum_probs=51.1
Q ss_pred CcEEEEeeCCCCCCCHHHHHHHHHHHHHHhhcCCEEEEEEEeCCCCCChhhHHHHHHHHHH-HHHhCCCCceeEEEEE--
Q 028129 84 KHLLLPITDQNPYLSEGTRQAAATTAALAKKYGADITVVVIDERQKESLPEHENRLSSIRW-HLSEGGFQEFRLLERL-- 160 (213)
Q Consensus 84 k~ILV~vD~~~~~~S~~s~~Al~~A~~LA~~~~a~L~ll~V~~~~~~~~~~~~~~l~~~~~-~l~~~g~~~~~v~~~v-- 160 (213)
++|++++. |..+|.-++..+.+. .|.++++++++...... .+. +.+.+ ..+..|++ +...-
T Consensus 231 ~kvlvalS-----GGvDSsvla~ll~~~---~G~~v~av~vd~g~~~~-~e~----~~~~~~~a~~lgi~---~~vv~~~ 294 (527)
T 3tqi_A 231 EQVIVGLS-----GGVDSAVTATLVHKA---IGDQLVCVLVDTGLLRL-NEV----DEVLNVFQKHLGAK---VICVDAK 294 (527)
T ss_dssp SCEEEECT-----TTHHHHHHHHHHHHH---HGGGEEEEEECCSCSCT-THH----HHHHHHHTTSSCCE---EEEECCH
T ss_pred CeEEEEEe-----cCcCHHHHHHHHHHH---hCCeEEEEEeccCCCCh-hHH----HHHHHHHHHHcCCc---EEEEeCh
Confidence 78999999 788777666655432 35689999988654321 122 22222 23334554 22110
Q ss_pred ------cccCCchHH-----------HHHHHHHHcCCcEEEEccc
Q 028129 161 ------GEGSSKPTA-----------IIGDVADELNLDLVIISME 188 (213)
Q Consensus 161 ------~~G~~~p~~-----------~Il~~A~e~~aDLIVmG~~ 188 (213)
..|.+++.. .+.++|+++++|.|+.|++
T Consensus 295 ~~~~~~l~g~~~~~~~r~~~~~~~~~~~~~~A~~~g~~~la~Gh~ 339 (527)
T 3tqi_A 295 DRFMKALKGISDPEEKRKIAGEQFIRVFEEQAKKLNVKWLGQGTI 339 (527)
T ss_dssp HHHHSSSSSCCCHHHHHHHHHHHHHHHHHHTTTTTTCCEEECCCC
T ss_pred HHHHHhhcCCCChhhhhhhhHHHHHHHHHHHHHHcCCCEEEcccc
Confidence 111112322 2346788899999999993
No 275
>2f6u_A GGGPS, (S)-3-O-geranylgeranylglyceryl phosphate synthase; non-canonical TIM-barrel, prenyltransferase, archaeal lipid synthesis, dimer; HET: CIT; 1.55A {Archaeoglobus fulgidus} SCOP: c.1.4.1 PDB: 2f6x_A*
Probab=24.09 E-value=1.1e+02 Score=24.78 Aligned_cols=40 Identities=20% Similarity=0.228 Sum_probs=26.2
Q ss_pred HHHHHHHHHcCCcEEEEcccCCCCCCchHHH----H--HhcCCCcEEEEc
Q 028129 169 AIIGDVADELNLDLVIISMEAIHSKHVDANL----L--AEFIPCPVLLLP 212 (213)
Q Consensus 169 ~~Il~~A~e~~aDLIVmG~~g~~~~Gs~~~~----v--l~~a~cPVLvVp 212 (213)
.++++...+.++|+|.+|-. .|.+... + +++.+.|+++.+
T Consensus 23 ~~~~~~l~~~GaD~IelG~S----~g~t~~~~~~~v~~ir~~~~Pivl~~ 68 (234)
T 2f6u_A 23 DEIIKAVADSGTDAVMISGT----QNVTYEKARTLIEKVSQYGLPIVVEP 68 (234)
T ss_dssp HHHHHHHHTTTCSEEEECCC----TTCCHHHHHHHHHHHTTSCCCEEECC
T ss_pred HHHHHHHHHcCCCEEEECCC----CCCCHHHHHHHHHHhcCCCCCEEEec
Confidence 45677788889999999972 2332221 1 566778887753
No 276
>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli}
Probab=24.03 E-value=2.3e+02 Score=26.73 Aligned_cols=64 Identities=14% Similarity=0.061 Sum_probs=36.3
Q ss_pred HHHHHHHHHhCCCCceeEEEEEcccCCchHHHHHHHHHHc-CCcEEEEcccCCC----CCCchHHHHHh--cCCCcEEEE
Q 028129 139 LSSIRWHLSEGGFQEFRLLERLGEGSSKPTAIIGDVADEL-NLDLVIISMEAIH----SKHVDANLLAE--FIPCPVLLL 211 (213)
Q Consensus 139 l~~~~~~l~~~g~~~~~v~~~v~~G~~~p~~~Il~~A~e~-~aDLIVmG~~g~~----~~Gs~~~~vl~--~a~cPVLvV 211 (213)
++.+...+.+.|++ +.. .. -.+..++.++++ ++|+||+-..-.. ..|..-..-++ ....||+++
T Consensus 21 ~~~L~~~L~~~g~~---v~~-a~-----~g~~al~~~~~~~~~d~vilDi~lp~~~~~~~G~~ll~~iR~~~~~iPIi~l 91 (755)
T 2vyc_A 21 VERLADALSQQNVT---VIK-ST-----SFDDGFAILSSNEAIDCLMFSYQMEHPDEHQNVRQLIGKLHERQQNVPVFLL 91 (755)
T ss_dssp HHHHHHHHHHTTCE---EEE-ES-----SHHHHHHHHTTTCCCSEEEEECCCCSHHHHHHHHHHHHHHHHHSTTCCEEEE
T ss_pred HHHHHHHHHhCCCE---EEE-EC-----CHHHHHHHHhcCCCCcEEEEeCCCCcccccccHHHHHHHHHHhCCCCCEEEE
Confidence 45555667777877 653 32 234555556665 5999999765431 12332222233 346899886
No 277
>3kbq_A Protein TA0487; structural genomics, CINA, protein structure initiative, MCS midwest center for structural genomics, unknown function; 2.00A {Thermoplasma acidophilum}
Probab=23.51 E-value=2.1e+02 Score=21.85 Aligned_cols=56 Identities=16% Similarity=0.004 Sum_probs=29.1
Q ss_pred HHHHHHHHhCCCCceeEEEEEcccCCchHHHHHHHHHHc--CCcEEEE-cccCCCCCCchHHHH
Q 028129 140 SSIRWHLSEGGFQEFRLLERLGEGSSKPTAIIGDVADEL--NLDLVII-SMEAIHSKHVDANLL 200 (213)
Q Consensus 140 ~~~~~~l~~~g~~~~~v~~~v~~G~~~p~~~Il~~A~e~--~aDLIVm-G~~g~~~~Gs~~~~v 200 (213)
..+...+.+.|++ +......++ ++ +.|.+..++. ++|+||. |.-|......+...+
T Consensus 26 ~~l~~~L~~~G~~---v~~~~iv~D-d~-~~I~~~l~~a~~~~DlVittGG~g~~~~D~T~ea~ 84 (172)
T 3kbq_A 26 AFIGNFLTYHGYQ---VRRGFVVMD-DL-DEIGWAFRVALEVSDLVVSSGGLGPTFDDMTVEGF 84 (172)
T ss_dssp HHHHHHHHHTTCE---EEEEEEECS-CH-HHHHHHHHHHHHHCSEEEEESCCSSSTTCCHHHHH
T ss_pred HHHHHHHHHCCCE---EEEEEEeCC-CH-HHHHHHHHHHHhcCCEEEEcCCCcCCcccchHHHH
Confidence 3445567778887 655444465 33 3444332221 3899987 333332234444444
No 278
>2nwr_A 2-dehydro-3-deoxyphosphooctonate aldolase; KDO, KDO8P, KDO8PS, PEP, A5P, transferase; HET: PEP; 1.50A {Aquifex aeolicus} PDB: 2nws_A* 2nx1_A* 3e0i_A* 1fwn_A* 1fwt_A* 1fws_A* 1fx6_A 1fww_A 1fxq_A* 1fy6_A* 1jcx_A* 1jcy_A* 1pck_A* 1pcw_A* 1fxp_A* 2a21_A* 2a2i_A* 1pe1_A* 3e12_A* 2nx3_A* ...
Probab=23.51 E-value=1.6e+02 Score=24.17 Aligned_cols=99 Identities=15% Similarity=0.143 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHHHhh---cCCEEEEE-EE-eCC-CC---CChh--hHHHHHHHHHHHHHhCCCCceeEEEEEcccCCch
Q 028129 99 EGTRQAAATTAALAKK---YGADITVV-VI-DER-QK---ESLP--EHENRLSSIRWHLSEGGFQEFRLLERLGEGSSKP 167 (213)
Q Consensus 99 ~~s~~Al~~A~~LA~~---~~a~L~ll-~V-~~~-~~---~~~~--~~~~~l~~~~~~l~~~g~~~~~v~~~v~~G~~~p 167 (213)
+.-+.++++|..|.+. ... +.++ -+ .+. ++ .++. ..++-+..+++...+.|+. +...+.+-
T Consensus 14 e~~~~~~~~A~~l~~~~~~~~~-~~~v~k~~f~KapRTs~~sf~G~g~~~GL~~l~~~~~e~Glp---~~te~~d~---- 85 (267)
T 2nwr_A 14 ESEELLLKVGEEIKRLSEKFKE-VEFVFKSSFDKANRSSIHSFRGHGLEYGVKALRKVKEEFGLK---ITTDIHES---- 85 (267)
T ss_dssp SCHHHHHHHHHHHHHHHHHCTT-EEEEEECBSCCTTCSSTTSCCCSCHHHHHHHHHHHHHHHCCE---EEEECSSG----
T ss_pred CCHHHHHHHHHHHHHHHHhhcC-ccEEEeeccccCCCCCCCCCcCccHHHHHHHHHHHHHhcCCe---EEEecCCH----
Confidence 3456788888776653 311 3333 22 121 11 1121 2344455555556777888 66555321
Q ss_pred HHHHHHHHHHcCCcEEEEcccCCCCCCchHHHHHhcCCCcEEE
Q 028129 168 TAIIGDVADELNLDLVIISMEAIHSKHVDANLLAEFIPCPVLL 210 (213)
Q Consensus 168 ~~~Il~~A~e~~aDLIVmG~~g~~~~Gs~~~~vl~~a~cPVLv 210 (213)
.-++++.+ .+|++=+|++.- .-..-..-+....+||++
T Consensus 86 --~~~~~l~~-~vd~~~IgA~~~--rn~~ll~~~a~~~~PV~l 123 (267)
T 2nwr_A 86 --WQAEPVAE-VADIIQIPAFLC--RQTDLLLAAAKTGRAVNV 123 (267)
T ss_dssp --GGHHHHHT-TCSEEEECGGGT--TCHHHHHHHHTTTSEEEE
T ss_pred --HhHHHHHh-cCCEEEECcccc--cCHHHHHHHHcCCCcEEE
Confidence 22445555 599999999764 222211115678999986
No 279
>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A
Probab=23.26 E-value=2.2e+02 Score=22.28 Aligned_cols=78 Identities=13% Similarity=0.095 Sum_probs=37.1
Q ss_pred CHHHHHHHHHHHHHHhhcCCEEEEEEEeCCCCCChhhHHHHHHHHHHHHHhCCCCceeEEEEEcccCCchHHHHHHHHHH
Q 028129 98 SEGTRQAAATTAALAKKYGADITVVVIDERQKESLPEHENRLSSIRWHLSEGGFQEFRLLERLGEGSSKPTAIIGDVADE 177 (213)
Q Consensus 98 S~~s~~Al~~A~~LA~~~~a~L~ll~V~~~~~~~~~~~~~~l~~~~~~l~~~g~~~~~v~~~v~~G~~~p~~~Il~~A~e 177 (213)
++.-...++-+.+.+++.|-++.++. .. . .+...+.+ +.+...++. -........ +.....++.+.+
T Consensus 14 ~~~~~~~~~gi~~~a~~~g~~~~~~~--~~---~---~~~~~~~i-~~l~~~~vd---giii~~~~~-~~~~~~~~~~~~ 80 (306)
T 8abp_A 14 EPWFQTEWKFADKAGKDLGFEVIKIA--VP---D---GEKTLNAI-DSLAASGAK---GFVICTPDP-KLGSAIVAKARG 80 (306)
T ss_dssp SHHHHHHHHHHHHHHHHHTEEEEEEE--CC---S---HHHHHHHH-HHHHHTTCC---EEEEECSCG-GGHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHcCCEEEEeC--CC---C---HHHHHHHH-HHHHHcCCC---EEEEeCCCc-hhhHHHHHHHHH
Confidence 34444555555556666675554332 11 1 11222222 233344555 222221111 234556677777
Q ss_pred cCCcEEEEccc
Q 028129 178 LNLDLVIISME 188 (213)
Q Consensus 178 ~~aDLIVmG~~ 188 (213)
.++=+|+++.+
T Consensus 81 ~~iPvV~~~~~ 91 (306)
T 8abp_A 81 YDMKVIAVDDQ 91 (306)
T ss_dssp TTCEEEEESSC
T ss_pred CCCcEEEeCCC
Confidence 78888888753
No 280
>2dfa_A Hypothetical UPF0271 protein TTHB195; lactam utilization protein, structural genomics, NPPSFA; 1.90A {Thermus thermophilus} SCOP: c.6.2.5
Probab=23.20 E-value=3.1e+02 Score=22.45 Aligned_cols=116 Identities=11% Similarity=0.048 Sum_probs=67.1
Q ss_pred CCCcEEEEeeCCCCCCCHHHHHHHHHHHHHHhhcCCEEEEEEEeCCCCCCh---------hhHHH----HHHHHHHHHHh
Q 028129 82 NFKHLLLPITDQNPYLSEGTRQAAATTAALAKKYGADITVVVIDERQKESL---------PEHEN----RLSSIRWHLSE 148 (213)
Q Consensus 82 ~~k~ILV~vD~~~~~~S~~s~~Al~~A~~LA~~~~a~L~ll~V~~~~~~~~---------~~~~~----~l~~~~~~l~~ 148 (213)
-+...=|+.. |.-.....++.++.+|++.|-.+-. |..-+...++ ++... ++..+......
T Consensus 27 ~VtSANIACG-----fHAGDp~~M~~tv~lA~~~gV~IGA-HPgypDl~GFGRR~m~~s~~el~~~v~YQiGAL~a~a~~ 100 (250)
T 2dfa_A 27 LVSSANLACG-----FHGGSPGRILEAVRLAKAHGVAVGA-HPGFPDLVGFGRREMALSPEEVYADVLYQIGALSAFLKA 100 (250)
T ss_dssp TCSEEEEECS-----SSSCCHHHHHHHHHHHHHTTCEEEE-ECCCSCTTTTTCSCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhcc-----ccCCCHHHHHHHHHHHHHcCCeEec-CCCCCcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555 5555678899999999999865533 3333332222 12221 22233334455
Q ss_pred CCCCceeEEEE------EcccCCchHHHHHHHHHHcCCcEEEEcccCCCCCCchHHHHHhcCCCcEE
Q 028129 149 GGFQEFRLLER------LGEGSSKPTAIIGDVADELNLDLVIISMEAIHSKHVDANLLAEFIPCPVL 209 (213)
Q Consensus 149 ~g~~~~~v~~~------v~~G~~~p~~~Il~~A~e~~aDLIVmG~~g~~~~Gs~~~~vl~~a~cPVL 209 (213)
.|.+-.++.-+ ..... ..+++|++.+.+.+.+|++||.. |+.-...+++..+|++
T Consensus 101 ~G~~l~hVKPHGALYN~~~~d~-~~A~av~~av~~~d~~L~l~~l~-----gs~~~~~A~~~Gl~~~ 161 (250)
T 2dfa_A 101 EGLPLHHVKPHGALYLKACRDR-ETARAIALAVKAFDPGLPLVVLP-----GTVYEEEARKAGLRVV 161 (250)
T ss_dssp TTCCCCCBCCCHHHHHHHHHCH-HHHHHHHHHHHHHCTTCCEEECT-----TSHHHHHHHHTTCCEE
T ss_pred cCCEeEEeccCHHHHHHHhhCH-HHHHHHHHHHHHhCCCcEEEecC-----ChHHHHHHHHcCCcEE
Confidence 66551111100 00111 47789999999999999999943 4566666777777765
No 281
>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, SUG binding protein, structural genomics, PSI-2; 2.05A {Burkholderia phymatum}
Probab=23.20 E-value=2.7e+02 Score=21.73 Aligned_cols=80 Identities=9% Similarity=-0.048 Sum_probs=37.3
Q ss_pred CHHHHHHHHHHHHHHhhcCCEEEEEEEeCCCCCChhhHHHHHHHHHHHHHhCCCCceeEEEEEcccCCchHHHHHHHHHH
Q 028129 98 SEGTRQAAATTAALAKKYGADITVVVIDERQKESLPEHENRLSSIRWHLSEGGFQEFRLLERLGEGSSKPTAIIGDVADE 177 (213)
Q Consensus 98 S~~s~~Al~~A~~LA~~~~a~L~ll~V~~~~~~~~~~~~~~l~~~~~~l~~~g~~~~~v~~~v~~G~~~p~~~Il~~A~e 177 (213)
++.-...++-+...+++.|-++.+....... ......+. ..+.+...++. -.... +. +.....++.+++
T Consensus 20 ~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~----~~~~~~~~-~~~~l~~~~vd---giIi~--~~-~~~~~~~~~l~~ 88 (290)
T 2rgy_A 20 GSYYGTILKQTDLELRAVHRHVVVATGCGES----TPREQALE-AVRFLIGRDCD---GVVVI--SH-DLHDEDLDELHR 88 (290)
T ss_dssp SHHHHHHHHHHHHHHHHTTCEEEEECCCSSS----CHHHHHHH-HHHHHHHTTCS---EEEEC--CS-SSCHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHCCCEEEEEeCCCch----hhhhhHHH-HHHHHHhcCcc---EEEEe--cC-CCCHHHHHHHhh
Confidence 3444455555555667777766543222111 11111000 22233444555 22221 21 122455666666
Q ss_pred cCCcEEEEccc
Q 028129 178 LNLDLVIISME 188 (213)
Q Consensus 178 ~~aDLIVmG~~ 188 (213)
.++-+|+++..
T Consensus 89 ~~iPvV~~~~~ 99 (290)
T 2rgy_A 89 MHPKMVFLNRA 99 (290)
T ss_dssp HCSSEEEESSC
T ss_pred cCCCEEEEccc
Confidence 77888888764
No 282
>3qze_A DHDPS, dihydrodipicolinate synthase; alpha beta barrel, cytoplasmic; 1.59A {Pseudomonas aeruginosa} PDB: 3puo_A* 3noe_A 3ps7_A* 3s8h_A
Probab=23.08 E-value=3e+02 Score=22.82 Aligned_cols=43 Identities=14% Similarity=0.223 Sum_probs=28.6
Q ss_pred HHHHHHHHHcCCcEEEEcccCCCCC---CchHHH--HHhcCCCcEEEE
Q 028129 169 AIIGDVADELNLDLVIISMEAIHSK---HVDANL--LAEFIPCPVLLL 211 (213)
Q Consensus 169 ~~Il~~A~e~~aDLIVmG~~g~~~~---Gs~~~~--vl~~a~cPVLvV 211 (213)
-++.+.|++.++|-+++........ |+...+ |+..++.||++.
T Consensus 108 i~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~lPiilY 155 (314)
T 3qze_A 108 VALTEAAKSGGADACLLVTPYYNKPTQEGMYQHFRHIAEAVAIPQILY 155 (314)
T ss_dssp HHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHHSCSCEEEE
T ss_pred HHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 3445789999999999987543111 222222 478889999875
No 283
>1v6t_A Hypothetical UPF0271 protein PH0986; TIM-barrel, lactam utilization protein, structural genomics; 1.70A {Pyrococcus horikoshii} SCOP: c.6.2.5
Probab=23.08 E-value=3.2e+02 Score=22.48 Aligned_cols=114 Identities=13% Similarity=0.133 Sum_probs=67.8
Q ss_pred CCCcEEEEeeCCCCCCCHHHHHHHHHHHHHHhhcCCEEEEEEEeCCCCCCh---------hhHHH----HHHHHHHHHHh
Q 028129 82 NFKHLLLPITDQNPYLSEGTRQAAATTAALAKKYGADITVVVIDERQKESL---------PEHEN----RLSSIRWHLSE 148 (213)
Q Consensus 82 ~~k~ILV~vD~~~~~~S~~s~~Al~~A~~LA~~~~a~L~ll~V~~~~~~~~---------~~~~~----~l~~~~~~l~~ 148 (213)
-+...=|+.. |.-.....++.++.+|++.|-.+-. |..-++..++ ++... ++..+......
T Consensus 27 ~VtSANIACG-----fHAGDp~~M~~tv~lA~~~gV~IGA-HPgypDl~GFGRR~m~~s~~el~~~v~YQiGAL~a~a~~ 100 (255)
T 1v6t_A 27 YITSANVACG-----WHAGDPLVMRKTVRLAKENDVQVGA-HPGYPDLMGFGRRYMKLTPEEARNYILYQVGALYAFAKA 100 (255)
T ss_dssp TCSEEEEECS-----SSSCCHHHHHHHHHHHHHTTCEEEE-ECCCSCTTTTTCSCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred Hhhhhhhhcc-----ccCCCHHHHHHHHHHHHHcCCeEec-CCCCCcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555 5555678899999999999865533 3333332222 12221 22333344566
Q ss_pred CCCCceeEEEEEcccC--------CchHHHHHHHHHHcCCcEEEEcccCCCCCCchHHHHHhcCCCcEE
Q 028129 149 GGFQEFRLLERLGEGS--------SKPTAIIGDVADELNLDLVIISMEAIHSKHVDANLLAEFIPCPVL 209 (213)
Q Consensus 149 ~g~~~~~v~~~v~~G~--------~~p~~~Il~~A~e~~aDLIVmG~~g~~~~Gs~~~~vl~~a~cPVL 209 (213)
.|.+ +...--+|- ...+++|++.+.+.+.+|++||.. |+.-...+++..+|++
T Consensus 101 ~G~~---l~hVKPHGALYN~~~~d~~~A~av~~av~~~d~~L~l~~l~-----gs~~~~~A~~~Gl~~~ 161 (255)
T 1v6t_A 101 EGLE---LQHVKPHGALYNAMVKEEDLARAVIEGILDFDKDLILVTLS-----NSRVADIAEEMGLKVA 161 (255)
T ss_dssp TTCC---EEEECCCHHHHHHHHHCHHHHHHHHHHHHHHCTTCEEEEET-----TCHHHHHHHHHTCCEE
T ss_pred cCCE---eEEeccCHHHHHHHhhCHHHHHHHHHHHHHhCCCcEEEecC-----ChHHHHHHHHcCCcEE
Confidence 7777 443222221 146789999999999999999954 3455555666666654
No 284
>3na8_A Putative dihydrodipicolinate synthetase; lyase; HET: MSE; 1.85A {Pseudomonas aeruginosa}
Probab=22.81 E-value=2.3e+02 Score=23.53 Aligned_cols=44 Identities=20% Similarity=0.224 Sum_probs=29.1
Q ss_pred HHHHHHHHHcCCcEEEEcccCCCCC---CchHHH--HHhcCCCcEEEEc
Q 028129 169 AIIGDVADELNLDLVIISMEAIHSK---HVDANL--LAEFIPCPVLLLP 212 (213)
Q Consensus 169 ~~Il~~A~e~~aDLIVmG~~g~~~~---Gs~~~~--vl~~a~cPVLvVp 212 (213)
-++.+.|++.++|-|++........ ++...+ |+..++.||++..
T Consensus 109 i~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~lPiilYn 157 (315)
T 3na8_A 109 VRRAQFAESLGAEAVMVLPISYWKLNEAEVFQHYRAVGEAIGVPVMLYN 157 (315)
T ss_dssp HHHHHHHHHTTCSEEEECCCCSSCCCHHHHHHHHHHHHHHCSSCEEEEE
T ss_pred HHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhCCCcEEEEe
Confidence 3445789999999999987543111 222222 4788899998753
No 285
>2amj_A Modulator of drug activity B; oxidoreductase, menadione, DT-diaphorase, montreal-kingston structural genomics initiative, BSGI; 1.80A {Escherichia coli} PDB: 2b3d_A*
Probab=22.73 E-value=2.3e+02 Score=21.61 Aligned_cols=20 Identities=20% Similarity=-0.059 Sum_probs=11.5
Q ss_pred HHHHHHHHHHcCCcEEEEcccC
Q 028129 168 TAIIGDVADELNLDLVIISMEA 189 (213)
Q Consensus 168 ~~~Il~~A~e~~aDLIVmG~~g 189 (213)
.+.+.+..++ +|.||+++.-
T Consensus 61 ~~~~~~~l~~--AD~iV~~~P~ 80 (204)
T 2amj_A 61 VKAEVQNFLW--ADVVIWQMPG 80 (204)
T ss_dssp HHHHHHHHHH--CSEEEEEEEC
T ss_pred HHHHHHHHHh--CCEEEEECCc
Confidence 3444444444 7777777754
No 286
>1qo0_D AMIR; binding protein, gene regulator, receptor; 2.25A {Pseudomonas aeruginosa} SCOP: c.23.1.3
Probab=22.71 E-value=1.4e+02 Score=21.87 Aligned_cols=11 Identities=27% Similarity=0.419 Sum_probs=5.7
Q ss_pred cCCcEEEEccc
Q 028129 178 LNLDLVIISME 188 (213)
Q Consensus 178 ~~aDLIVmG~~ 188 (213)
..+|+|++...
T Consensus 51 ~~~dlvl~D~~ 61 (196)
T 1qo0_D 51 VPVDVVFTSIF 61 (196)
T ss_dssp SCCSEEEEECC
T ss_pred CCCCEEEEeCC
Confidence 34555555543
No 287
>3o1i_D Periplasmic protein TORT; ligand free, two component sensor, periplasmic binding prote signaling protein; HET: PE4; 2.80A {Vibrio parahaemolyticus} PDB: 3o1h_B* 3o1j_C
Probab=22.57 E-value=2.7e+02 Score=21.60 Aligned_cols=17 Identities=6% Similarity=0.132 Sum_probs=8.8
Q ss_pred HHHHHHHcCCcEEEEcc
Q 028129 171 IGDVADELNLDLVIISM 187 (213)
Q Consensus 171 Il~~A~e~~aDLIVmG~ 187 (213)
+++.....++|-||+..
T Consensus 55 ~~~~~~~~~vdgiii~~ 71 (304)
T 3o1i_D 55 QLALCTQWGANAIILGT 71 (304)
T ss_dssp HHHHHHHHTCSEEEECC
T ss_pred HHHHHHHcCCCEEEEeC
Confidence 34444445666666554
No 288
>2vk2_A YTFQ, ABC transporter periplasmic-binding protein YTFQ; transport protein, galactofuranose; HET: GZL; 1.20A {Escherichia coli}
Probab=22.54 E-value=2.8e+02 Score=21.78 Aligned_cols=19 Identities=5% Similarity=0.153 Sum_probs=11.3
Q ss_pred HHHHHHHHcCCcEEEEccc
Q 028129 170 IIGDVADELNLDLVIISME 188 (213)
Q Consensus 170 ~Il~~A~e~~aDLIVmG~~ 188 (213)
.+++.+.+.++=+|+++..
T Consensus 74 ~~~~~~~~~~iPvV~~~~~ 92 (306)
T 2vk2_A 74 PVLKEAKDAEIPVFLLDRS 92 (306)
T ss_dssp HHHHHHHHTTCCEEEESSC
T ss_pred HHHHHHHHCCCCEEEecCC
Confidence 4455555566667776653
No 289
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=22.45 E-value=2.7e+02 Score=21.50 Aligned_cols=21 Identities=5% Similarity=-0.069 Sum_probs=14.2
Q ss_pred HHHHHHHHHHcCCcEEEEccc
Q 028129 168 TAIIGDVADELNLDLVIISME 188 (213)
Q Consensus 168 ~~~Il~~A~e~~aDLIVmG~~ 188 (213)
...+++.+.+.++=+|+++..
T Consensus 88 ~~~~~~~~~~~~iPvV~~~~~ 108 (298)
T 3tb6_A 88 NIGYYLNLEKNGIPFAMINAS 108 (298)
T ss_dssp THHHHHHHHHTTCCEEEESSC
T ss_pred cHHHHHHHHhcCCCEEEEecC
Confidence 345666666777777777764
No 290
>1ii7_A MRE11 nuclease; RAD50, DNA double-strand break repair, DAMP, manganese, replication; HET: DA; 2.20A {Pyrococcus furiosus} SCOP: d.159.1.4 PDB: 3dsc_A* 3dsd_A* 1s8e_A
Probab=22.44 E-value=1.6e+02 Score=24.27 Aligned_cols=11 Identities=9% Similarity=0.145 Sum_probs=5.1
Q ss_pred CCc-EEEEcccC
Q 028129 179 NLD-LVIISMEA 189 (213)
Q Consensus 179 ~aD-LIVmG~~g 189 (213)
++. .+|.|.|.
T Consensus 75 ~~~v~~v~GNHD 86 (333)
T 1ii7_A 75 SIPVFAIEGNHD 86 (333)
T ss_dssp TCCEEEECCTTT
T ss_pred CCcEEEeCCcCC
Confidence 344 34445554
No 291
>2pjk_A 178AA long hypothetical molybdenum cofactor biosynthesis protein B; 3D-structure, structural genomics, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii} PDB: 3iwt_A*
Probab=22.30 E-value=1.5e+02 Score=22.55 Aligned_cols=40 Identities=18% Similarity=0.105 Sum_probs=22.1
Q ss_pred HHHHHHHhCCCCceeEEEEEcccCCchHHHHHH----HHHHcCCcEEEE
Q 028129 141 SIRWHLSEGGFQEFRLLERLGEGSSKPTAIIGD----VADELNLDLVII 185 (213)
Q Consensus 141 ~~~~~l~~~g~~~~~v~~~v~~G~~~p~~~Il~----~A~e~~aDLIVm 185 (213)
.+...+.+.|++ +......++ ++ +.|.+ .+++.++|+||.
T Consensus 44 ~L~~~l~~~G~~---v~~~~iv~D-d~-~~I~~al~~a~~~~~~DlVit 87 (178)
T 2pjk_A 44 IIKQLLIENGHK---IIGYSLVPD-DK-IKILKAFTDALSIDEVDVIIS 87 (178)
T ss_dssp HHHHHHHHTTCE---EEEEEEECS-CH-HHHHHHHHHHHTCTTCCEEEE
T ss_pred HHHHHHHHCCCE---EEEEEEeCC-CH-HHHHHHHHHHHhcCCCCEEEE
Confidence 344567777887 554444454 33 33433 333335899887
No 292
>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1
Probab=22.28 E-value=2.5e+02 Score=21.14 Aligned_cols=44 Identities=7% Similarity=0.043 Sum_probs=22.4
Q ss_pred HHHHHHHHHhCCCCceeEEEEEcccCCchHHHHHHHHHH---cCCcEEEEcc
Q 028129 139 LSSIRWHLSEGGFQEFRLLERLGEGSSKPTAIIGDVADE---LNLDLVIISM 187 (213)
Q Consensus 139 l~~~~~~l~~~g~~~~~v~~~v~~G~~~p~~~Il~~A~e---~~aDLIVmG~ 187 (213)
++.+++.+...|+.. .+. +..|+ ..+.+-+...+ ..+|+|++..
T Consensus 107 ~~~a~~~~~~~g~~~-~i~--~~~~d--~~~~~~~~~~~~~~~~~D~v~~d~ 153 (229)
T 2avd_A 107 PELGRPLWRQAEAEH-KID--LRLKP--ALETLDELLAAGEAGTFDVAVVDA 153 (229)
T ss_dssp HHHHHHHHHHTTCTT-TEE--EEESC--HHHHHHHHHHTTCTTCEEEEEECS
T ss_pred HHHHHHHHHHCCCCC-eEE--EEEcC--HHHHHHHHHhcCCCCCccEEEECC
Confidence 344444555556521 133 33464 55544444432 5688888854
No 293
>3g85_A Transcriptional regulator (LACI family); transcription regulator, PSI-II, structural genomics structure initiative; 1.84A {Clostridium acetobutylicum atcc 824}
Probab=22.28 E-value=1.7e+02 Score=22.77 Aligned_cols=9 Identities=11% Similarity=0.471 Sum_probs=4.0
Q ss_pred CCcEEEEcc
Q 028129 179 NLDLVIISM 187 (213)
Q Consensus 179 ~aDLIVmG~ 187 (213)
++=+|+++.
T Consensus 91 ~iPvV~~~~ 99 (289)
T 3g85_A 91 TLPIILFNR 99 (289)
T ss_dssp SSCEEEESC
T ss_pred CCCEEEECC
Confidence 344444444
No 294
>2v9d_A YAGE; dihydrodipicolinic acid synthase, N-acetyl neuraminate lyase, NAL, lyase, DHDPS, prophage; 2.15A {Escherichia coli} PDB: 2v8z_A 3nev_A* 3n2x_A*
Probab=22.22 E-value=2.8e+02 Score=23.44 Aligned_cols=46 Identities=13% Similarity=0.205 Sum_probs=29.9
Q ss_pred chHHH--HHHHHHHcCCcEEEEcccCCCCC---CchHHH--HHhcCCCcEEEE
Q 028129 166 KPTAI--IGDVADELNLDLVIISMEAIHSK---HVDANL--LAEFIPCPVLLL 211 (213)
Q Consensus 166 ~p~~~--Il~~A~e~~aDLIVmG~~g~~~~---Gs~~~~--vl~~a~cPVLvV 211 (213)
+..+. +.+.|++.++|-|++-....... |+...+ |+..++.||++.
T Consensus 111 st~eai~la~~A~~~Gadavlv~~P~Y~~~s~~~l~~~f~~VA~a~~lPiilY 163 (343)
T 2v9d_A 111 NARETIELSQHAQQAGADGIVVINPYYWKVSEANLIRYFEQVADSVTLPVMLY 163 (343)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEECCSSSCCCHHHHHHHHHHHHHTCSSCEEEE
T ss_pred CHHHHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 34444 46788999999998877543111 222222 478889999875
No 295
>2q7x_A UPF0052 protein SP_1565; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, transferase; HET: MLY MSE; 2.00A {Streptococcus pneumoniae}
Probab=21.90 E-value=64 Score=27.53 Aligned_cols=42 Identities=7% Similarity=0.156 Sum_probs=28.9
Q ss_pred hHHHHHHHHHHcCCcEEEEcccCCCCCCchHHHH-------HhcCCCcEEEE
Q 028129 167 PTAIIGDVADELNLDLVIISMEAIHSKHVDANLL-------AEFIPCPVLLL 211 (213)
Q Consensus 167 p~~~Il~~A~e~~aDLIVmG~~g~~~~Gs~~~~v-------l~~a~cPVLvV 211 (213)
+..+.++..++ +|+||+|--....+ +-..++ +++++||++.|
T Consensus 174 a~p~al~AI~~--AD~IvlgPGSl~TS-I~P~Llv~gi~~Ai~~s~A~kV~v 222 (326)
T 2q7x_A 174 ASRRVVQTILE--SDMIVLGPGSLFTS-ILPNIVIXEIGRALLETXAEIAYV 222 (326)
T ss_dssp BCSHHHHHHHH--CSEEEECSSCCCCC-CHHHHTSHHHHHHHHHCSSEEEEE
T ss_pred CCHHHHHHHHh--CCEEEECCCCCHHH-HhhhhhhccHHHHHHhccCceEEe
Confidence 55677777776 99999998664222 223322 78889998876
No 296
>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G*
Probab=21.82 E-value=2.9e+02 Score=21.57 Aligned_cols=77 Identities=14% Similarity=0.042 Sum_probs=37.7
Q ss_pred CHHHHHHHHHHHHHHhhcCCEEEEEEEeCCCCCChhhHHHHHHHHHHHHHhCCCCceeEEEEEcccCCchHHHHHHHHHH
Q 028129 98 SEGTRQAAATTAALAKKYGADITVVVIDERQKESLPEHENRLSSIRWHLSEGGFQEFRLLERLGEGSSKPTAIIGDVADE 177 (213)
Q Consensus 98 S~~s~~Al~~A~~LA~~~~a~L~ll~V~~~~~~~~~~~~~~l~~~~~~l~~~g~~~~~v~~~v~~G~~~p~~~Il~~A~e 177 (213)
++.-...++-..+.+++.|-++.+..... +.+... +..+.+...++. -.... +. +..+..++.+.+
T Consensus 28 ~~~~~~~~~gi~~~a~~~g~~~~~~~~~~-------~~~~~~-~~~~~l~~~~vd---giIi~--~~-~~~~~~~~~l~~ 93 (289)
T 2fep_A 28 SIFYSELARGIEDIATMYKYNIILSNSDQ-------NMEKEL-HLLNTMLGKQVD---GIVFM--GG-NITDEHVAEFKR 93 (289)
T ss_dssp SHHHHHHHHHHHHHHHHTTCEEEEEECTT-------CHHHHH-HHHHHHHHTTCS---EEEEC--CS-CCCHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHcCCEEEEEeCCC-------CHHHHH-HHHHHHHhCCCC---EEEEe--cC-CCCHHHHHHHHh
Confidence 44445555555566677777665442211 111111 222334445555 22111 21 122445566667
Q ss_pred cCCcEEEEccc
Q 028129 178 LNLDLVIISME 188 (213)
Q Consensus 178 ~~aDLIVmG~~ 188 (213)
.++=+|+++..
T Consensus 94 ~~iPvV~~~~~ 104 (289)
T 2fep_A 94 SPVPIVLAASV 104 (289)
T ss_dssp SSSCEEEESCC
T ss_pred cCCCEEEEccc
Confidence 77888888764
No 297
>3nbk_A Phosphopantetheine adenylyltransferase; PPAT, PHP; HET: PNS; 1.58A {Mycobacterium tuberculosis} PDB: 3nba_A* 3pnb_A* 4e1a_A 3lcj_A 3rba_A* 1tfu_A* 3rff_A 3rhs_A* 3uc5_A*
Probab=21.73 E-value=2.7e+02 Score=21.29 Aligned_cols=80 Identities=13% Similarity=0.268 Sum_probs=43.4
Q ss_pred CCHHHHHHHHHHHHHHhhcCCEEEEEEEeCCCCCChhhHHHHHHHHHHHHHhCCCCceeEEEEEcccCCchHHHHHHHHH
Q 028129 97 LSEGTRQAAATTAALAKKYGADITVVVIDERQKESLPEHENRLSSIRWHLSEGGFQEFRLLERLGEGSSKPTAIIGDVAD 176 (213)
Q Consensus 97 ~S~~s~~Al~~A~~LA~~~~a~L~ll~V~~~~~~~~~~~~~~l~~~~~~l~~~g~~~~~v~~~v~~G~~~p~~~Il~~A~ 176 (213)
....-...++.|.++. .+|.++....+.....-..+++++-++..+ .+.+.+.+. ..+| -.+++++
T Consensus 33 iH~GHl~ii~~A~~~~----D~Viv~v~~np~K~~~~s~eeR~~mv~~a~--~~~~~v~V~--~~e~------l~vd~~~ 98 (177)
T 3nbk_A 33 VTLGHVDIFERAAAQF----DEVVVAILVNPAKTGMFDLDERIAMVKEST--THLPNLRVQ--VGHG------LVVDFVR 98 (177)
T ss_dssp CCHHHHHHHHHHHHHS----SEEEEEECCCTTSCCSSCHHHHHHHHHHHC--TTCTTEEEE--ECCS------CHHHHHH
T ss_pred CCHHHHHHHHHHHHHC----CEEEEEEcCCCCCCCCCCHHHHHHHHHHHh--CCCCCEEEE--ecCc------hHHHHHH
Confidence 3455566777776654 467666443322222212344444443322 233332232 2223 3678999
Q ss_pred HcCCcEEEEcccCC
Q 028129 177 ELNLDLVIISMEAI 190 (213)
Q Consensus 177 e~~aDLIVmG~~g~ 190 (213)
+.+++.||.|-+.-
T Consensus 99 ~~~a~~ivrGlr~~ 112 (177)
T 3nbk_A 99 SCGMTAIVKGLRTG 112 (177)
T ss_dssp HTTCCEEEEEECTT
T ss_pred HcCCCEEEECCCch
Confidence 99999999998864
No 298
>3d8u_A PURR transcriptional regulator; APC91343.1, vibrio parahaem RIMD 2210633, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.88A {Vibrio parahaemolyticus}
Probab=21.35 E-value=2.4e+02 Score=21.64 Aligned_cols=77 Identities=12% Similarity=0.031 Sum_probs=38.8
Q ss_pred CHHHHHHHHHHHHHHhhcCCEEEEEEEeCCCCCChhhHHHHHHHHHHHHHhCCCCceeEEEEEcccCCchHHHHHHHHHH
Q 028129 98 SEGTRQAAATTAALAKKYGADITVVVIDERQKESLPEHENRLSSIRWHLSEGGFQEFRLLERLGEGSSKPTAIIGDVADE 177 (213)
Q Consensus 98 S~~s~~Al~~A~~LA~~~~a~L~ll~V~~~~~~~~~~~~~~l~~~~~~l~~~g~~~~~v~~~v~~G~~~p~~~Il~~A~e 177 (213)
++.-...++...+.+++.|-++.++.... +.+.. ....+.+...++. -.... +. +..+.+++.+.+
T Consensus 15 ~~~~~~~~~gi~~~~~~~g~~~~~~~~~~-------~~~~~-~~~~~~l~~~~vd---gii~~--~~-~~~~~~~~~l~~ 80 (275)
T 3d8u_A 15 EKACAHFLPSFQQALNKAGYQLLLGYSDY-------SIEQE-EKLLSTFLESRPA---GVVLF--GS-EHSQRTHQLLEA 80 (275)
T ss_dssp CHHHHHHHHHHHHHHHHTSCEECCEECTT-------CHHHH-HHHHHHHHTSCCC---CEEEE--SS-CCCHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHCCCEEEEEcCCC-------CHHHH-HHHHHHHHhcCCC---EEEEe--CC-CCCHHHHHHHHh
Confidence 44455555556666777777665442211 11111 1222334444555 22122 22 223456666777
Q ss_pred cCCcEEEEccc
Q 028129 178 LNLDLVIISME 188 (213)
Q Consensus 178 ~~aDLIVmG~~ 188 (213)
.++-+|+++..
T Consensus 81 ~~iPvV~~~~~ 91 (275)
T 3d8u_A 81 SNTPVLEIAEL 91 (275)
T ss_dssp HTCCEEEESSS
T ss_pred CCCCEEEEeec
Confidence 78888888774
No 299
>1xw8_A UPF0271 protein YBGL; NESG, northeast structural genomics consortium, structural genomics, protein structure initiative, PSI, X-RAY; 2.00A {Escherichia coli} SCOP: c.6.2.5
Probab=21.13 E-value=3.4e+02 Score=22.21 Aligned_cols=104 Identities=11% Similarity=0.056 Sum_probs=61.6
Q ss_pred CCHHHHHHHHHHHHHHhhcCCEEEEEEEeCCCCCCh---------hhHHH----HHHHHHHHHHhCCCCceeEEEEEccc
Q 028129 97 LSEGTRQAAATTAALAKKYGADITVVVIDERQKESL---------PEHEN----RLSSIRWHLSEGGFQEFRLLERLGEG 163 (213)
Q Consensus 97 ~S~~s~~Al~~A~~LA~~~~a~L~ll~V~~~~~~~~---------~~~~~----~l~~~~~~l~~~g~~~~~v~~~v~~G 163 (213)
|--.....++.++.+|++.|-.+-. |..-+...++ ++... ++..+.......|.+ +...--+|
T Consensus 32 fHAGDp~~M~~Tv~lA~~~gV~IGA-HPgypDl~GFGRR~m~~s~~el~~~v~YQiGAL~a~a~~~G~~---l~hVKPHG 107 (252)
T 1xw8_A 32 FHAGDAQIMQACVREAIKNGVAIGA-HPSFPDRENFGRSAMQLPPETVYAQTLYQIGALATIARAQGGV---MRHVKPHG 107 (252)
T ss_dssp SSSCCHHHHHHHHHHHHHHTCEEEE-ECCCC-------CCCCCCHHHHHHHHHHHHHHHHHHHHHTTCC---EEEECCCH
T ss_pred ccCCCHHHHHHHHHHHHHcCCeeec-CCCCCcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCE---eEEeCcCH
Confidence 4445567889999999999865533 3322222221 12221 222333445667777 44322222
Q ss_pred --------CCchHHHHHHHHHHcCCcEEEEcccCCCCCCchHHHHHhcCCCcEE
Q 028129 164 --------SSKPTAIIGDVADELNLDLVIISMEAIHSKHVDANLLAEFIPCPVL 209 (213)
Q Consensus 164 --------~~~p~~~Il~~A~e~~aDLIVmG~~g~~~~Gs~~~~vl~~a~cPVL 209 (213)
+...+++|++.+.+.+.+|++||.. |+.-...+++..+|++
T Consensus 108 ALYN~~a~d~~~A~av~~av~~~d~~L~l~~l~-----gs~~~~~A~~~Gl~~~ 156 (252)
T 1xw8_A 108 MLYNQAAKEAQLADAIARAVYACDPALILVGLA-----GSELIRAGKQYGLTTR 156 (252)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCEEEEET-----TSHHHHHHHHTTCCEE
T ss_pred HHHHHHhhCHHHHHHHHHHHHHhCCCcEEEecC-----ChHHHHHHHHcCCcEE
Confidence 1147789999999999999999954 4555666777777765
No 300
>3fs2_A 2-dehydro-3-deoxyphosphooctonate aldolase; ssgcid, bruciellla melitensis, DAHP synthetase I, cytoplasm, lipopolysaccharide biosynthesis; HET: PG4; 1.85A {Brucella melitensis}
Probab=21.02 E-value=2.2e+02 Score=23.92 Aligned_cols=100 Identities=17% Similarity=0.138 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHHHhh---cCCEEEEE-EEeCCCC---CChh--hHHHHHHHHHHHHHhCCCCceeEEEEEcccCCchHH
Q 028129 99 EGTRQAAATTAALAKK---YGADITVV-VIDERQK---ESLP--EHENRLSSIRWHLSEGGFQEFRLLERLGEGSSKPTA 169 (213)
Q Consensus 99 ~~s~~Al~~A~~LA~~---~~a~L~ll-~V~~~~~---~~~~--~~~~~l~~~~~~l~~~g~~~~~v~~~v~~G~~~p~~ 169 (213)
+.-+.++++|..+.+. .+..+.+- ..++.++ .++. ..++-++.+++...+.|+. +...+. ..
T Consensus 52 es~e~~~~~A~~lk~~~~~~~~~~v~k~~f~KapRTs~~sf~Glg~~~GL~~L~~~~~e~GLp---v~Tev~------D~ 122 (298)
T 3fs2_A 52 ETRDHAFEMAGRLKEMTDKLGIGLVYKSSFDKANRTSLKAARGIGLEKALEVFSDLKKEYGFP---VLTDIH------TE 122 (298)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTCCEEEECBCCCCC---------CCHHHHHHHHHHHHHHHCCC---EEEECC------SH
T ss_pred CCHHHHHHHHHHHHHHHHHcCCcEEEEcccccCCCCCCCCcCCcCHHHHHHHHHHHHHhcCCe---EEEEeC------CH
Confidence 3466777888776643 34222222 2222011 1121 1234455555566777988 665552 23
Q ss_pred HHHHHHHHcCCcEEEEcccCCCCCCchHHHHHhcCCCcEEE
Q 028129 170 IIGDVADELNLDLVIISMEAIHSKHVDANLLAEFIPCPVLL 210 (213)
Q Consensus 170 ~Il~~A~e~~aDLIVmG~~g~~~~Gs~~~~vl~~a~cPVLv 210 (213)
.-++++.+. +|++=+|++.- .-..-..-+.+..+||++
T Consensus 123 ~~v~~l~~~-vd~lkIgA~~~--~n~~LLr~va~~gkPVil 160 (298)
T 3fs2_A 123 EQCAAVAPV-VDVLQIPAFLC--RQTDLLIAAARTGRVVNV 160 (298)
T ss_dssp HHHHHHTTT-CSEEEECGGGT--TCHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHhh-CCEEEECcccc--CCHHHHHHHHccCCcEEE
Confidence 445677777 99999999764 222211125578888876
No 301
>3tak_A DHDPS, dihydrodipicolinate synthase; TIM barrel, lysine biosynthesis, pyruvate, lyase; 1.42A {Acinetobacter baumannii} PDB: 3pud_A* 3pue_A* 3pul_A 3rk8_A 3tce_A* 3tdf_A 3u8g_A 3uqn_A 4dxv_A
Probab=20.65 E-value=3e+02 Score=22.39 Aligned_cols=42 Identities=17% Similarity=0.285 Sum_probs=28.1
Q ss_pred HHHHHHHHcCCcEEEEcccCCCCC---CchHHH--HHhcCCCcEEEE
Q 028129 170 IIGDVADELNLDLVIISMEAIHSK---HVDANL--LAEFIPCPVLLL 211 (213)
Q Consensus 170 ~Il~~A~e~~aDLIVmG~~g~~~~---Gs~~~~--vl~~a~cPVLvV 211 (213)
++.+.|++.++|-+++........ |+...+ ++..++.||++.
T Consensus 87 ~la~~a~~~Gadavlv~~P~y~~~~~~~l~~~f~~ia~a~~lPiilY 133 (291)
T 3tak_A 87 ELTKAAKDLGADAALLVTPYYNKPTQEGLYQHYKAIAEAVELPLILY 133 (291)
T ss_dssp HHHHHHHHHTCSEEEEECCCSSCCCHHHHHHHHHHHHHHCCSCEEEE
T ss_pred HHHHHHHhcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 445789999999999887543111 222222 478889999875
No 302
>2x5e_A UPF0271 protein PA4511; unknown function; HET: CIT; 2.30A {Pseudomonas aeruginosa} PDB: 2xu2_A*
Probab=20.50 E-value=3.6e+02 Score=22.13 Aligned_cols=118 Identities=14% Similarity=0.095 Sum_probs=69.9
Q ss_pred cCCCcEEEEeeCCCCCCCHHHHHHHHHHHHHHhhcCCEEEEEEEeCCCCCCh---------hhHHH----HHHHHHHHHH
Q 028129 81 TNFKHLLLPITDQNPYLSEGTRQAAATTAALAKKYGADITVVVIDERQKESL---------PEHEN----RLSSIRWHLS 147 (213)
Q Consensus 81 ~~~k~ILV~vD~~~~~~S~~s~~Al~~A~~LA~~~~a~L~ll~V~~~~~~~~---------~~~~~----~l~~~~~~l~ 147 (213)
.-+...=|+.. |.-.....++.++.+|++.|..+-. |..-+...++ ++... ++..+.....
T Consensus 32 ~~VtSANIACG-----fHAGDp~~M~~Tv~lA~~~gV~IGA-HPgypDl~GFGRR~m~~s~~el~~~v~YQiGAL~a~a~ 105 (252)
T 2x5e_A 32 PLVDQANLACG-----FHAGDPLTMRRAVELAVRHGVSIGA-HPAYPDLSGFGRRSLACSAEEVHAMVLYQIGALDAFCR 105 (252)
T ss_dssp GGCSEEEEECS-----SSSCCHHHHHHHHHHHHHTTCEEEE-ECCCSCTTTTTCSCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred Hhhhhhhhhcc-----ccCCCHHHHHHHHHHHHHcCCeeec-CCCCCcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 33444555666 5555678899999999999865533 3333332222 12221 2223334455
Q ss_pred hCCCCceeEEEEEccc--------CCchHHHHHHHHHHcCCcEEEEcccCCCCCCchHHHHHhcCCCcEE
Q 028129 148 EGGFQEFRLLERLGEG--------SSKPTAIIGDVADELNLDLVIISMEAIHSKHVDANLLAEFIPCPVL 209 (213)
Q Consensus 148 ~~g~~~~~v~~~v~~G--------~~~p~~~Il~~A~e~~aDLIVmG~~g~~~~Gs~~~~vl~~a~cPVL 209 (213)
..|.+ +...--+| +...+++|++.+.+.+.+|++||..-. .|+.-...+++..+|++
T Consensus 106 ~~G~~---l~hVKPHGALYN~~~~d~~~A~av~~av~~~d~~L~l~~l~~~--~gs~~~~~A~~~Gl~~~ 170 (252)
T 2x5e_A 106 SLGTQ---VAYVKPHGALYNDLVGDDELLRAVLDACAAYRKGLPLMVLALA--DNGRELELADEADVPLL 170 (252)
T ss_dssp HTTCC---CCEECCCHHHHHHHTTCHHHHHHHHHHHHHHCTTCCEEEECCS--CCHHHHHHHHHHTCCEE
T ss_pred HcCCE---eEEeccCHHHHHHHhhCHHHHHHHHHHHHHhCCCcEEEEeCCC--CCCHHHHHHHHcCCcEE
Confidence 66766 32211111 114778999999999999999996522 36666666777777765
No 303
>2o2z_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, NAD-binding protein; HET: NAD; 2.60A {Bacillus halodurans} PDB: 2hzb_A
Probab=20.40 E-value=77 Score=27.07 Aligned_cols=43 Identities=19% Similarity=0.206 Sum_probs=29.2
Q ss_pred chHHHHHHHHHHcCCcEEEEcccCCCCCCchHHHH-------HhcCCCcEEEE
Q 028129 166 KPTAIIGDVADELNLDLVIISMEAIHSKHVDANLL-------AEFIPCPVLLL 211 (213)
Q Consensus 166 ~p~~~Il~~A~e~~aDLIVmG~~g~~~~Gs~~~~v-------l~~a~cPVLvV 211 (213)
.+..+.++..++ +|+||+|--....+ +-..++ +++++||++.|
T Consensus 167 ~~~p~~l~AI~~--AD~IvlgPGS~~TS-I~P~Llv~gi~~Ai~~s~A~kV~v 216 (323)
T 2o2z_A 167 KPLREGLEAIRK--ADVIVIGPGSLYTS-VLPNLLVPGICEAIKQSTARKVYI 216 (323)
T ss_dssp CCCHHHHHHHHH--CSEEEECSSCTTTT-HHHHHTSTTHHHHHHHCCSEEEEE
T ss_pred CCCHHHHHHHHh--CCEEEECCCCCHHH-hcccccCchHHHHHHhCCCCEEEE
Confidence 356778888877 99999998654222 222222 78889998876
No 304
>2dri_A D-ribose-binding protein; sugar transport; HET: RIP; 1.60A {Escherichia coli} SCOP: c.93.1.1 PDB: 1urp_A* 1ba2_A 1dbp_A* 1drj_A* 1drk_A* 2gx6_A*
Probab=20.40 E-value=3e+02 Score=21.19 Aligned_cols=19 Identities=11% Similarity=0.244 Sum_probs=12.8
Q ss_pred HHHHHHHHcCCcEEEEccc
Q 028129 170 IIGDVADELNLDLVIISME 188 (213)
Q Consensus 170 ~Il~~A~e~~aDLIVmG~~ 188 (213)
..++.+.+.++=+|+++..
T Consensus 73 ~~~~~~~~~~iPvV~i~~~ 91 (271)
T 2dri_A 73 NAVKMANQANIPVITLDRQ 91 (271)
T ss_dssp HHHHHHHHTTCCEEEESSC
T ss_pred HHHHHHHHCCCcEEEecCC
Confidence 4556666667777887764
No 305
>3q0i_A Methionyl-tRNA formyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; 1.89A {Vibrio cholerae}
Probab=20.18 E-value=2.5e+02 Score=23.51 Aligned_cols=42 Identities=12% Similarity=0.097 Sum_probs=28.8
Q ss_pred HHHHHHhCCCCceeEEEEEcccCCchHHHHHHHHHHcCCcEEEEcccCC
Q 028129 142 IRWHLSEGGFQEFRLLERLGEGSSKPTAIIGDVADELNLDLVIISMEAI 190 (213)
Q Consensus 142 ~~~~l~~~g~~~~~v~~~v~~G~~~p~~~Il~~A~e~~aDLIVmG~~g~ 190 (213)
+++...+.|+. +.... .- -..++++..+++++|+||+...++
T Consensus 55 v~~~A~~~gIp---v~~~~--~~--~~~~~~~~l~~~~~Dliv~~~y~~ 96 (318)
T 3q0i_A 55 VKTLALEHNVP---VYQPE--NF--KSDESKQQLAALNADLMVVVAYGL 96 (318)
T ss_dssp HHHHHHHTTCC---EECCS--CS--CSHHHHHHHHTTCCSEEEESSCCS
T ss_pred HHHHHHHcCCC---EEccC--cC--CCHHHHHHHHhcCCCEEEEeCccc
Confidence 44566777888 43211 11 125788889999999999988775
No 306
>3bil_A Probable LACI-family transcriptional regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum atcc 13032}
Probab=20.17 E-value=3.5e+02 Score=21.92 Aligned_cols=13 Identities=15% Similarity=0.332 Sum_probs=0.0
Q ss_pred hhhhhhhcccCCC
Q 028129 56 RFRRIGHKAKVKS 68 (213)
Q Consensus 56 ~~~r~~~~a~~~~ 68 (213)
|++.+++.++.-.
T Consensus 10 ti~dvA~~aGVS~ 22 (348)
T 3bil_A 10 TLKDVARQAGVSI 22 (348)
T ss_dssp -------------
T ss_pred CHHHHHHHHCCCH
Confidence 4555555555333
Done!