Query 028130
Match_columns 213
No_of_seqs 303 out of 2686
Neff 8.4
Searched_HMMs 29240
Date Mon Mar 25 10:40:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028130.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028130hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fxv_A ELAV-like protein 1; RN 99.9 8.4E-24 2.9E-28 150.0 11.7 82 47-128 17-98 (99)
2 3pgw_S U1-70K; protein-RNA com 99.9 4.1E-23 1.4E-27 182.0 18.4 90 46-135 99-188 (437)
3 2cq0_A Eukaryotic translation 99.9 1.1E-22 3.7E-27 144.7 13.1 90 45-134 11-100 (103)
4 2cpz_A CUG triplet repeat RNA- 99.9 2.5E-22 8.4E-27 145.7 14.8 93 42-134 18-110 (115)
5 2dnm_A SRP46 splicing factor; 99.9 1.2E-22 3.9E-27 144.6 12.5 90 43-132 7-96 (103)
6 3s8s_A Histone-lysine N-methyl 99.9 1.1E-22 3.6E-27 147.0 12.4 84 46-129 3-86 (110)
7 2dnz_A Probable RNA-binding pr 99.9 2.7E-22 9.2E-27 140.4 12.9 86 47-132 3-88 (95)
8 2dgo_A Cytotoxic granule-assoc 99.9 8.3E-22 2.8E-26 142.8 15.8 91 41-131 7-97 (115)
9 2dgs_A DAZ-associated protein 99.9 4.2E-22 1.4E-26 140.6 13.8 90 43-133 4-93 (99)
10 1x5u_A Splicing factor 3B subu 99.9 3.2E-22 1.1E-26 142.7 13.2 89 43-131 9-97 (105)
11 2dnh_A Bruno-like 5, RNA bindi 99.9 5E-22 1.7E-26 141.7 13.9 89 45-134 11-102 (105)
12 3ex7_B RNA-binding protein 8A; 99.9 1.1E-22 3.9E-27 149.7 10.9 92 41-132 14-105 (126)
13 2cqb_A Peptidyl-prolyl CIS-tra 99.9 2.5E-22 8.4E-27 142.5 12.1 90 44-133 7-96 (102)
14 2cqd_A RNA-binding region cont 99.9 9.1E-22 3.1E-26 142.9 15.0 90 40-130 8-97 (116)
15 2d9p_A Polyadenylate-binding p 99.9 6.2E-22 2.1E-26 140.8 13.5 90 42-133 8-97 (103)
16 1whw_A Hypothetical protein ri 99.9 5.1E-22 1.7E-26 140.1 12.9 86 46-131 5-90 (99)
17 2do4_A Squamous cell carcinoma 99.9 8.3E-22 2.8E-26 139.4 13.8 89 41-130 9-97 (100)
18 2cqc_A Arginine/serine-rich sp 99.9 4.5E-22 1.6E-26 139.2 12.1 86 43-128 9-94 (95)
19 1x5s_A Cold-inducible RNA-bind 99.9 3.3E-22 1.1E-26 141.9 11.5 89 43-131 6-94 (102)
20 1x4h_A RNA-binding protein 28; 99.9 9.7E-22 3.3E-26 141.4 14.0 90 43-132 9-104 (111)
21 2e5h_A Zinc finger CCHC-type a 99.9 5.6E-22 1.9E-26 138.6 12.3 86 42-127 9-94 (94)
22 2cph_A RNA binding motif prote 99.9 8.7E-22 3E-26 140.8 13.5 90 43-132 9-100 (107)
23 3bs9_A Nucleolysin TIA-1 isofo 99.9 3.5E-22 1.2E-26 137.5 10.9 84 46-129 3-86 (87)
24 1p27_B RNA-binding protein 8A; 99.9 3.5E-22 1.2E-26 142.7 11.2 90 41-130 15-104 (106)
25 1h2v_Z 20 kDa nuclear CAP bind 99.9 7E-22 2.4E-26 150.8 13.0 88 43-130 33-120 (156)
26 1x5t_A Splicing factor 3B subu 99.9 3.9E-22 1.3E-26 139.9 10.7 86 47-132 3-89 (96)
27 2cpe_A RNA-binding protein EWS 99.9 1E-21 3.5E-26 141.9 13.2 91 42-132 8-106 (113)
28 2dng_A Eukaryotic translation 99.9 1.2E-21 4E-26 139.4 13.2 88 42-131 8-95 (103)
29 2kxn_B Transformer-2 protein h 99.9 3.3E-22 1.1E-26 148.4 10.7 89 42-130 39-127 (129)
30 1u6f_A Tcubp1, RNA-binding pro 99.9 9.4E-22 3.2E-26 147.2 13.3 90 43-132 36-125 (139)
31 3mdf_A Peptidyl-prolyl CIS-tra 99.9 5.4E-22 1.9E-26 136.0 10.9 82 46-127 4-85 (85)
32 2cq3_A RNA-binding protein 9; 99.9 2.7E-21 9.2E-26 137.4 14.7 92 41-134 7-98 (103)
33 2la6_A RNA-binding protein FUS 99.9 8.6E-22 2.9E-26 139.1 12.0 88 40-127 4-99 (99)
34 3md1_A Nuclear and cytoplasmic 99.9 1.1E-21 3.8E-26 133.9 11.9 82 49-130 1-82 (83)
35 1x4a_A Splicing factor, argini 99.9 3E-21 1E-25 138.6 14.8 88 41-131 14-101 (109)
36 1oo0_B CG8781-PA, drosophila Y 99.9 6.8E-22 2.3E-26 142.2 11.3 91 40-130 17-107 (110)
37 2fy1_A RNA-binding motif prote 99.9 1.3E-21 4.4E-26 142.5 12.8 85 45-130 3-87 (116)
38 1wi8_A EIF-4B, eukaryotic tran 99.9 1.6E-21 5.3E-26 139.0 12.8 86 44-131 10-96 (104)
39 2cpf_A RNA binding motif prote 99.9 1.1E-21 3.9E-26 138.1 11.5 86 47-132 3-91 (98)
40 2do0_A HnRNP M, heterogeneous 99.9 9.1E-21 3.1E-25 137.0 16.4 88 42-130 8-95 (114)
41 2lkz_A RNA-binding protein 5; 99.9 5E-22 1.7E-26 139.8 9.4 86 43-128 3-94 (95)
42 2x1f_A MRNA 3'-END-processing 99.9 1.4E-21 4.9E-26 137.2 11.5 83 48-130 1-83 (96)
43 2lxi_A RNA-binding protein 10; 99.9 2E-22 6.8E-27 140.7 7.0 83 49-131 1-85 (91)
44 2dgp_A Bruno-like 4, RNA bindi 99.9 1.1E-21 3.8E-26 140.1 10.9 89 43-131 7-98 (106)
45 2cqi_A Nucleolysin TIAR; RNA r 99.9 4.7E-21 1.6E-25 136.2 13.8 89 42-132 8-96 (103)
46 2div_A TRNA selenocysteine ass 99.9 1.2E-21 4.1E-26 138.2 10.5 87 44-130 4-95 (99)
47 2cq4_A RNA binding motif prote 99.9 8.3E-22 2.8E-26 142.7 9.9 83 47-130 23-105 (114)
48 3p5t_L Cleavage and polyadenyl 99.9 2.4E-22 8.3E-27 139.7 6.8 84 50-133 2-87 (90)
49 1x4c_A Splicing factor, argini 99.9 6.3E-21 2.2E-25 136.9 14.2 81 43-130 9-94 (108)
50 3ulh_A THO complex subunit 4; 99.9 2E-21 6.9E-26 139.0 11.5 85 42-127 22-106 (107)
51 2dh8_A DAZ-associated protein 99.9 2E-21 6.8E-26 138.6 11.5 88 43-131 10-97 (105)
52 2khc_A Testis-specific RNP-typ 99.9 7.7E-21 2.6E-25 138.3 14.8 86 42-127 33-118 (118)
53 2dgx_A KIAA0430 protein; RRM d 99.9 2.3E-21 7.9E-26 136.3 11.3 85 44-131 4-92 (96)
54 1rk8_A CG8781-PA, CG8781-PA pr 99.9 2.4E-21 8.3E-26 149.3 11.9 91 40-130 63-153 (165)
55 2jrs_A RNA-binding protein 39; 99.9 2.6E-21 8.9E-26 139.2 11.1 88 43-130 20-107 (108)
56 4f25_A Polyadenylate-binding p 99.9 2.6E-21 9E-26 140.6 11.2 82 48-131 4-85 (115)
57 2dhg_A TRNA selenocysteine ass 99.9 3.8E-21 1.3E-25 136.8 11.7 87 44-131 4-92 (104)
58 2ywk_A Putative RNA-binding pr 99.9 2.7E-21 9.1E-26 135.3 10.7 85 43-128 10-94 (95)
59 1wel_A RNA-binding protein 12; 99.9 7.7E-22 2.6E-26 145.1 8.2 85 44-129 20-104 (124)
60 2cqp_A RNA-binding protein 12; 99.9 1.8E-21 6.2E-26 137.0 9.6 85 45-129 11-95 (98)
61 2dgv_A HnRNP M, heterogeneous 99.9 4.2E-21 1.4E-25 133.6 11.3 85 44-130 3-87 (92)
62 4a8x_A RNA-binding protein wit 99.9 2.9E-21 1E-25 133.1 10.3 84 47-130 2-86 (88)
63 2dgu_A Heterogeneous nuclear r 99.9 1.1E-20 3.8E-25 134.4 13.5 83 43-133 5-87 (103)
64 3s7r_A Heterogeneous nuclear r 99.9 6.6E-21 2.3E-25 131.3 11.8 83 43-126 5-87 (87)
65 3ns6_A Eukaryotic translation 99.9 8.9E-22 3E-26 139.6 7.4 83 47-129 4-93 (100)
66 2cqg_A TDP-43, TAR DNA-binding 99.9 2.2E-20 7.4E-25 132.7 14.4 88 42-131 8-95 (103)
67 1x4b_A Heterogeneous nuclear r 99.9 5.8E-21 2E-25 138.6 11.3 88 43-131 21-108 (116)
68 1p1t_A Cleavage stimulation fa 99.8 1.1E-21 3.6E-26 139.6 7.1 88 43-130 2-89 (104)
69 2ek1_A RNA-binding protein 12; 99.8 1.6E-21 5.6E-26 136.4 7.7 83 46-128 12-94 (95)
70 2fc9_A NCL protein; structure 99.8 1.6E-20 5.4E-25 133.0 12.6 85 42-130 8-92 (101)
71 2kt5_A RNA and export factor-b 99.8 1.6E-20 5.4E-25 138.0 12.7 90 44-134 30-119 (124)
72 2m2b_A RNA-binding protein 10; 99.8 4.2E-21 1.4E-25 142.6 9.7 90 41-131 15-110 (131)
73 2cpi_A CCR4-NOT transcription 99.8 1E-20 3.5E-25 136.5 11.3 87 44-130 10-102 (111)
74 3ucg_A Polyadenylate-binding p 99.8 1.1E-20 3.6E-25 130.6 10.9 81 48-129 5-85 (89)
75 3n9u_C Cleavage and polyadenyl 99.8 7.2E-21 2.5E-25 145.6 10.3 83 47-129 53-137 (156)
76 2dnq_A RNA-binding protein 4B; 99.8 2.5E-20 8.6E-25 129.3 12.1 80 45-132 4-83 (90)
77 1x5o_A RNA binding motif, sing 99.8 5.3E-20 1.8E-24 133.0 14.2 86 43-129 19-112 (114)
78 2dgw_A Probable RNA-binding pr 99.8 3E-20 1E-24 129.1 12.4 83 45-130 6-88 (91)
79 2err_A Ataxin-2-binding protei 99.8 1.2E-20 4.3E-25 135.7 10.5 90 38-129 18-107 (109)
80 2cq1_A PTB-like protein L; RRM 99.8 5E-20 1.7E-24 131.0 13.5 84 43-132 9-94 (101)
81 1x4e_A RNA binding motif, sing 99.8 2.1E-21 7.1E-26 133.3 6.0 82 46-127 2-83 (85)
82 2fc8_A NCL protein; structure 99.8 3.8E-20 1.3E-24 131.2 12.6 83 45-130 11-93 (102)
83 1x4d_A Matrin 3; structural ge 99.8 1.2E-20 4.2E-25 134.3 10.0 79 46-130 12-93 (102)
84 2dgt_A RNA-binding protein 30; 99.8 3.9E-20 1.3E-24 128.8 12.2 82 43-132 4-85 (92)
85 2rs2_A Musashi-1, RNA-binding 99.8 1.7E-20 5.7E-25 135.1 10.6 87 43-130 19-105 (109)
86 2lea_A Serine/arginine-rich sp 99.8 5.6E-21 1.9E-25 142.8 8.4 88 43-130 41-128 (135)
87 2cpx_A Hypothetical protein FL 99.8 4.5E-21 1.5E-25 138.9 7.5 92 43-134 19-110 (115)
88 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.8 2.5E-20 8.5E-25 139.2 11.8 84 43-126 57-140 (140)
89 2dis_A Unnamed protein product 99.8 1.9E-20 6.6E-25 134.3 10.8 86 47-132 6-95 (109)
90 1sjq_A Polypyrimidine tract-bi 99.8 1.2E-20 4.1E-25 134.8 9.5 82 44-131 11-94 (105)
91 1wex_A Hypothetical protein (r 99.8 4.1E-20 1.4E-24 132.1 12.3 84 43-132 9-94 (104)
92 3r27_A HnRNP L, heterogeneous 99.8 2.3E-20 7.7E-25 132.1 10.6 82 43-130 15-98 (100)
93 2kn4_A Immunoglobulin G-bindin 99.8 2.3E-20 7.7E-25 142.5 11.4 88 44-131 65-152 (158)
94 2jwn_A Embryonic polyadenylate 99.8 2.2E-20 7.5E-25 137.0 10.9 83 47-130 34-116 (124)
95 2j76_E EIF-4B, EIF4B, eukaryot 99.8 5.2E-21 1.8E-25 135.5 7.1 88 41-130 11-99 (100)
96 1why_A Hypothetical protein ri 99.8 6.2E-20 2.1E-24 129.0 12.6 81 44-130 12-94 (97)
97 2f3j_A RNA and export factor b 99.8 6.3E-20 2.1E-24 143.2 13.7 86 44-130 83-168 (177)
98 1wez_A HnRNP H', FTP-3, hetero 99.8 3.3E-20 1.1E-24 132.1 11.0 84 44-130 10-93 (102)
99 3beg_B Splicing factor, argini 99.8 1.4E-20 4.7E-25 136.8 9.0 75 47-128 14-93 (115)
100 2dnp_A RNA-binding protein 14; 99.8 5.2E-20 1.8E-24 127.7 11.4 80 44-131 4-83 (90)
101 2cpj_A Non-POU domain-containi 99.8 6.3E-20 2.1E-24 129.5 12.0 82 44-131 10-91 (99)
102 1s79_A Lupus LA protein; RRM, 99.8 1.3E-20 4.5E-25 134.5 8.4 81 46-128 8-88 (103)
103 2cpd_A Apobec-1 stimulating pr 99.8 1.6E-19 5.3E-24 127.4 13.8 83 40-130 6-90 (99)
104 2cpy_A RNA-binding protein 12; 99.8 1.3E-20 4.5E-25 136.6 8.4 85 44-130 10-95 (114)
105 2mss_A Protein (musashi1); RNA 99.8 1E-20 3.5E-25 126.7 7.0 75 51-126 1-75 (75)
106 2nlw_A Eukaryotic translation 99.8 4.3E-20 1.5E-24 131.9 10.6 83 45-129 11-100 (105)
107 2ad9_A Polypyrimidine tract-bi 99.8 5.4E-20 1.8E-24 134.4 10.8 88 39-132 21-110 (119)
108 1wg5_A Heterogeneous nuclear r 99.8 8.6E-20 3E-24 130.1 11.7 84 45-130 11-95 (104)
109 2ytc_A PRE-mRNA-splicing facto 99.8 6.5E-20 2.2E-24 125.6 10.5 80 42-127 5-85 (85)
110 1wf1_A RNA-binding protein RAL 99.8 9.2E-20 3.2E-24 131.1 11.7 79 44-130 22-101 (110)
111 2db1_A Heterogeneous nuclear r 99.8 4.3E-20 1.5E-24 134.8 9.9 84 44-129 12-98 (118)
112 1uaw_A Mouse-musashi-1; RNP-ty 99.8 1.5E-20 5.3E-25 126.3 6.8 76 50-126 1-76 (77)
113 2jvr_A Nucleolar protein 3; RN 99.8 3.1E-20 1.1E-24 134.2 8.5 81 45-129 24-105 (111)
114 2wbr_A GW182, gawky, LD47780P; 99.8 7.1E-20 2.4E-24 125.9 9.8 75 47-127 5-79 (89)
115 2a3j_A U1 small nuclear ribonu 99.8 5.6E-20 1.9E-24 136.0 10.0 84 44-130 24-111 (127)
116 1x4g_A Nucleolysin TIAR; struc 99.8 1.3E-19 4.6E-24 130.0 11.7 82 45-132 21-102 (109)
117 2e5j_A Methenyltetrahydrofolat 99.8 1.2E-19 4E-24 127.7 11.1 82 44-130 14-95 (97)
118 2jvo_A Nucleolar protein 3; nu 99.8 7.9E-20 2.7E-24 131.4 10.4 82 41-130 23-104 (108)
119 3q2s_C Cleavage and polyadenyl 99.8 2.8E-20 9.5E-25 150.8 9.0 82 48-129 67-150 (229)
120 2lcw_A RNA-binding protein FUS 99.7 1E-21 3.5E-26 142.7 0.0 87 45-131 3-97 (116)
121 2kvi_A Nuclear polyadenylated 99.8 5.2E-20 1.8E-24 129.3 8.6 79 45-131 6-85 (96)
122 2ki2_A SS-DNA binding protein 99.8 6.7E-21 2.3E-25 132.1 3.9 81 50-131 2-82 (90)
123 1fj7_A Nucleolin RBD1, protein 99.8 9.5E-21 3.3E-25 134.1 4.7 84 45-130 13-96 (101)
124 1nu4_A U1A RNA binding domain; 99.8 7.6E-20 2.6E-24 128.3 8.4 83 45-130 4-90 (97)
125 2la4_A Nuclear and cytoplasmic 99.8 1.1E-19 3.8E-24 128.6 9.3 78 46-129 24-101 (101)
126 2dnn_A RNA-binding protein 12; 99.8 1.1E-19 3.8E-24 130.9 9.3 81 46-129 13-93 (109)
127 1fjc_A Nucleolin RBD2, protein 99.8 8.3E-20 2.9E-24 128.0 8.1 82 44-130 11-92 (96)
128 2hvz_A Splicing factor, argini 99.8 1.2E-19 4.2E-24 128.4 9.0 76 50-130 1-76 (101)
129 2xnq_A Nuclear polyadenylated 99.8 3.8E-19 1.3E-23 125.3 11.4 79 43-129 16-95 (97)
130 2hgl_A HNRPF protein, heteroge 99.8 7.8E-20 2.7E-24 136.7 8.2 84 44-129 39-125 (136)
131 2cqh_A IGF-II mRNA-binding pro 99.8 2.4E-19 8.1E-24 125.0 10.1 79 46-131 5-85 (93)
132 2krb_A Eukaryotic translation 99.8 5.5E-20 1.9E-24 125.2 6.7 73 49-123 1-80 (81)
133 2e5g_A U6 snRNA-specific termi 99.8 5E-19 1.7E-23 123.7 11.6 79 47-131 6-84 (94)
134 1x4f_A Matrin 3; structural ge 99.8 2.9E-19 9.8E-24 129.1 10.5 81 46-132 22-105 (112)
135 3lqv_A PRE-mRNA branch site pr 99.8 2.9E-19 9.8E-24 129.4 10.5 82 46-130 5-86 (115)
136 2lmi_A GRSF-1, G-rich sequence 99.8 5.4E-20 1.9E-24 131.9 6.4 85 43-129 5-92 (107)
137 1x5p_A Negative elongation fac 99.8 1.4E-18 4.8E-23 122.1 13.6 80 45-132 11-90 (97)
138 2e44_A Insulin-like growth fac 99.8 3.7E-19 1.3E-23 124.6 10.0 81 46-130 12-93 (96)
139 4f02_A Polyadenylate-binding p 99.8 4.8E-19 1.6E-23 141.5 11.9 84 46-129 12-95 (213)
140 1iqt_A AUF1, heterogeneous nuc 99.8 5.5E-20 1.9E-24 123.1 5.2 75 51-126 1-75 (75)
141 2xs2_A Deleted in azoospermia- 99.8 1.2E-19 4.2E-24 128.6 7.1 84 44-130 4-87 (102)
142 2hgn_A Heterogeneous nuclear r 99.8 6.2E-20 2.1E-24 137.7 5.2 85 43-130 40-124 (139)
143 3md3_A Nuclear and cytoplasmic 99.8 1.6E-18 5.6E-23 131.7 13.0 84 45-128 83-166 (166)
144 2cq2_A Hypothetical protein LO 99.8 4.7E-19 1.6E-23 128.3 9.0 83 46-134 22-111 (114)
145 1whx_A Hypothetical protein ri 99.8 6.1E-19 2.1E-23 127.3 9.6 77 48-130 9-85 (111)
146 3egn_A RNA-binding protein 40; 99.8 1.3E-19 4.3E-24 136.3 5.9 86 45-131 41-132 (143)
147 2qfj_A FBP-interacting repress 99.8 1.6E-18 5.3E-23 137.7 12.5 88 47-134 123-210 (216)
148 2e5i_A Heterogeneous nuclear r 99.8 3.6E-18 1.2E-22 125.6 13.4 79 46-130 20-103 (124)
149 2i2y_A Fusion protein consists 99.8 1.1E-18 3.8E-23 132.1 10.4 84 42-130 66-149 (150)
150 1b7f_A Protein (SXL-lethal pro 99.8 1.9E-18 6.6E-23 131.9 11.6 83 48-130 2-84 (168)
151 1fxl_A Paraneoplastic encephal 99.8 2.4E-18 8.2E-23 130.9 12.1 82 49-130 2-83 (167)
152 2yh0_A Splicing factor U2AF 65 99.8 4.1E-18 1.4E-22 133.5 13.7 87 44-130 109-195 (198)
153 1wg1_A KIAA1579 protein, homol 99.8 1.5E-18 5.2E-23 119.9 9.3 76 48-130 4-79 (88)
154 2hgm_A HNRPF protein, heteroge 99.8 5.9E-19 2E-23 130.2 7.7 82 44-128 37-120 (126)
155 1l3k_A Heterogeneous nuclear r 99.8 1.6E-18 5.6E-23 135.6 10.5 89 41-130 5-93 (196)
156 1l3k_A Heterogeneous nuclear r 99.8 3.6E-18 1.2E-22 133.6 11.5 87 45-132 100-186 (196)
157 2g4b_A Splicing factor U2AF 65 99.8 5E-18 1.7E-22 130.2 12.1 80 47-126 92-171 (172)
158 2dha_A FLJ20171 protein; RRM d 99.8 6.9E-19 2.4E-23 129.4 6.3 80 47-128 21-104 (123)
159 2bz2_A Negative elongation fac 99.8 3.9E-18 1.3E-22 125.0 10.0 81 44-132 34-114 (121)
160 2diu_A KIAA0430 protein; struc 99.8 7.2E-18 2.5E-22 117.0 10.7 75 47-131 6-86 (96)
161 2dnl_A Cytoplasmic polyadenyla 99.8 2.4E-18 8.2E-23 124.6 8.5 79 46-127 5-86 (114)
162 1sjr_A Polypyrimidine tract-bi 99.7 4E-18 1.4E-22 130.7 9.5 80 47-130 44-125 (164)
163 3zzy_A Polypyrimidine tract-bi 99.7 8.1E-18 2.8E-22 124.4 10.7 79 47-130 26-107 (130)
164 2j8a_A Histone-lysine N-methyl 99.7 4.6E-18 1.6E-22 124.6 8.6 78 50-127 3-94 (136)
165 3d2w_A TAR DNA-binding protein 99.7 8.5E-18 2.9E-22 116.6 9.7 79 43-130 5-85 (89)
166 1b7f_A Protein (SXL-lethal pro 99.7 1.9E-17 6.4E-22 126.3 12.1 80 47-126 87-168 (168)
167 4f02_A Polyadenylate-binding p 99.7 8.3E-18 2.8E-22 134.3 10.4 81 48-130 102-182 (213)
168 2cjk_A Nuclear polyadenylated 99.7 4E-18 1.4E-22 130.1 7.4 81 48-129 86-166 (167)
169 3tyt_A Heterogeneous nuclear r 99.7 1.7E-17 5.7E-22 132.2 11.1 79 47-130 2-81 (205)
170 1wf0_A TDP-43, TAR DNA-binding 99.7 5.5E-18 1.9E-22 116.9 7.2 78 47-131 3-80 (88)
171 2qfj_A FBP-interacting repress 99.7 1.5E-17 5E-22 132.1 10.2 84 46-129 25-108 (216)
172 3md3_A Nuclear and cytoplasmic 99.7 2.5E-17 8.4E-22 125.2 10.9 80 50-130 1-80 (166)
173 1fxl_A Paraneoplastic encephal 99.7 3.2E-17 1.1E-21 124.7 11.0 80 47-126 86-167 (167)
174 2hzc_A Splicing factor U2AF 65 99.7 1.2E-17 4E-22 114.7 7.7 73 46-125 3-86 (87)
175 2pe8_A Splicing factor 45; RRM 99.7 5.6E-17 1.9E-21 115.9 11.2 83 46-128 5-93 (105)
176 3nmr_A Cugbp ELAV-like family 99.7 4.7E-17 1.6E-21 124.8 10.4 81 46-127 92-175 (175)
177 3pgw_A U1-A; protein-RNA compl 99.7 7E-17 2.4E-21 133.7 11.6 84 44-130 4-91 (282)
178 1fje_B Nucleolin RBD12, protei 99.7 5.4E-17 1.8E-21 124.9 10.0 79 46-129 96-174 (175)
179 3nmr_A Cugbp ELAV-like family 99.7 6.4E-17 2.2E-21 124.0 10.1 83 48-130 2-89 (175)
180 2ghp_A U4/U6 snRNA-associated 99.7 3.2E-17 1.1E-21 136.3 8.0 84 45-129 206-291 (292)
181 3u1l_A PRE-mRNA-splicing facto 99.7 5.6E-17 1.9E-21 131.8 9.0 79 46-130 131-230 (240)
182 2cjk_A Nuclear polyadenylated 99.7 6.2E-17 2.1E-21 123.4 8.4 80 48-129 2-81 (167)
183 2dit_A HIV TAT specific factor 99.7 5.7E-16 2E-20 111.7 13.1 82 45-130 11-103 (112)
184 2voo_A Lupus LA protein; RNA-b 99.7 2.3E-16 7.8E-21 124.5 11.3 80 48-129 108-187 (193)
185 2adc_A Polypyrimidine tract-bi 99.7 1.6E-16 5.3E-21 128.3 9.9 80 46-130 31-111 (229)
186 3pgw_A U1-A; protein-RNA compl 99.7 3E-16 1E-20 129.9 10.9 79 45-128 203-282 (282)
187 3smz_A Protein raver-1, ribonu 99.7 5E-16 1.7E-20 128.6 11.8 84 46-130 181-265 (284)
188 3smz_A Protein raver-1, ribonu 99.7 6.2E-16 2.1E-20 128.1 12.0 83 48-130 94-176 (284)
189 1fje_B Nucleolin RBD12, protei 99.6 8.8E-17 3E-21 123.7 4.6 85 44-130 8-92 (175)
190 1qm9_A Polypyrimidine tract-bi 99.6 1.2E-15 4.2E-20 119.8 11.1 79 46-129 117-197 (198)
191 1qm9_A Polypyrimidine tract-bi 99.6 4.3E-16 1.5E-20 122.4 8.3 77 49-130 3-80 (198)
192 3v4m_A Splicing factor U2AF 65 99.6 1E-15 3.6E-20 109.3 9.2 82 47-128 3-96 (105)
193 3tyt_A Heterogeneous nuclear r 99.6 5E-16 1.7E-20 123.6 7.7 79 46-126 120-204 (205)
194 3sde_A Paraspeckle component 1 99.6 1.5E-15 5E-20 124.9 10.6 79 44-128 17-95 (261)
195 2adc_A Polypyrimidine tract-bi 99.6 1.9E-15 6.5E-20 121.9 10.8 79 46-129 148-228 (229)
196 3ue2_A Poly(U)-binding-splicin 99.6 3.4E-15 1.2E-19 108.8 9.8 81 48-128 19-108 (118)
197 3sde_A Paraspeckle component 1 99.6 4E-15 1.4E-19 122.3 11.0 82 48-130 95-180 (261)
198 1jmt_A Splicing factor U2AF 35 99.6 6.9E-16 2.3E-20 110.0 5.1 72 54-126 20-103 (104)
199 2ghp_A U4/U6 snRNA-associated 99.6 3.2E-15 1.1E-19 124.2 9.4 82 48-130 116-198 (292)
200 2d9o_A DNAJ (HSP40) homolog, s 99.6 1.8E-14 6.3E-19 101.8 11.8 78 49-133 10-94 (100)
201 2g4b_A Splicing factor U2AF 65 99.6 5E-15 1.7E-19 113.3 8.9 76 48-130 3-89 (172)
202 2yh0_A Splicing factor U2AF 65 99.6 9.3E-15 3.2E-19 114.3 9.3 76 48-130 3-89 (198)
203 3tht_A Alkylated DNA repair pr 99.5 1.4E-14 4.9E-19 123.4 9.3 76 46-127 15-97 (345)
204 3s6e_A RNA-binding protein 39; 99.5 9.4E-14 3.2E-18 100.5 10.0 80 45-128 3-92 (114)
205 1owx_A Lupus LA protein, SS-B, 99.5 3.5E-13 1.2E-17 98.1 10.3 83 39-127 8-94 (121)
206 2dnr_A Synaptojanin-1; RRM dom 99.4 1.7E-12 5.9E-17 89.1 7.6 74 47-129 5-86 (91)
207 1ufw_A Synaptojanin 2; RNP dom 99.2 1.1E-11 3.8E-16 85.5 5.1 73 46-127 12-93 (95)
208 3dxb_A Thioredoxin N-terminall 99.1 3.1E-10 1.1E-14 90.7 11.1 80 49-128 124-212 (222)
209 2l9w_A U4/U6 snRNA-associated- 98.9 9.3E-09 3.2E-13 72.5 9.1 74 46-125 18-96 (117)
210 1wey_A Calcipressin 1; structu 98.4 8.6E-07 2.9E-11 62.1 7.4 76 48-129 4-84 (104)
211 1uw4_A UPF3X; nonsense mediate 98.3 1.1E-05 3.8E-10 55.3 10.0 80 50-129 2-88 (91)
212 2dhx_A Poly (ADP-ribose) polym 98.2 1.2E-05 4.1E-10 56.1 9.8 74 47-129 6-84 (104)
213 1wwh_A Nucleoporin 35, nucleop 98.2 9.5E-06 3.2E-10 58.2 8.3 75 44-126 19-94 (119)
214 1whv_A Poly(A)-specific ribonu 97.9 4.1E-05 1.4E-09 52.8 7.3 55 49-112 16-70 (100)
215 3ctr_A Poly(A)-specific ribonu 97.8 4.8E-05 1.6E-09 52.6 6.3 54 50-112 7-60 (101)
216 2l08_A Regulator of nonsense t 97.8 5E-05 1.7E-09 52.5 6.5 80 48-127 8-94 (97)
217 3p3d_A Nucleoporin 53; structu 97.8 3.5E-05 1.2E-09 56.1 5.4 79 47-127 5-97 (132)
218 3pq1_A Poly(A) RNA polymerase; 97.0 0.00041 1.4E-08 61.0 3.5 54 50-109 54-107 (464)
219 2i2y_A Fusion protein consists 96.8 0.00067 2.3E-08 50.2 3.0 42 87-129 9-51 (150)
220 2kn4_A Immunoglobulin G-bindin 96.7 0.0013 4.6E-08 48.8 3.9 36 78-115 2-37 (158)
221 3d45_A Poly(A)-specific ribonu 93.9 0.14 4.6E-06 45.6 7.3 56 49-113 440-495 (507)
222 2g0c_A ATP-dependent RNA helic 93.1 0.31 1.1E-05 31.3 6.2 68 51-127 2-75 (76)
223 4eyt_A Telomerase associated p 92.8 0.81 2.8E-05 30.8 7.9 72 45-124 8-86 (129)
224 3pgw_S U1-70K; protein-RNA com 84.7 4.3 0.00015 35.1 8.8 24 97-122 147-170 (437)
225 4f25_A Polyadenylate-binding p 82.4 0.15 5.1E-06 35.5 -1.3 19 47-65 95-113 (115)
226 3fry_A Probable copper-exporti 79.7 5.6 0.00019 24.5 5.8 55 50-111 7-61 (73)
227 4e8u_A Putative uncharacterize 79.2 9 0.00031 28.8 7.5 57 50-109 13-81 (172)
228 4a4j_A Pacszia, cation-transpo 71.3 12 0.00042 22.2 5.7 55 50-110 4-61 (69)
229 3dxs_X Copper-transporting ATP 70.4 15 0.00052 22.2 6.6 56 50-111 4-63 (74)
230 2cu1_A Mitogen-activated prote 66.0 16 0.00055 24.8 5.5 65 56-129 23-88 (103)
231 1kvi_A Copper-transporting ATP 63.6 22 0.00074 21.5 6.4 58 48-111 8-69 (79)
232 1yg0_A COP associated protein; 59.8 22 0.00075 20.3 6.3 55 51-111 4-61 (66)
233 3lpe_A Putative transcription 58.3 20 0.00067 23.7 5.0 34 76-114 40-73 (92)
234 3j21_T 50S ribosomal protein L 56.7 36 0.0012 22.4 5.9 58 51-111 24-83 (86)
235 2kt2_A Mercuric reductase; nme 55.5 28 0.00096 20.2 5.8 53 51-109 3-58 (69)
236 2g9o_A Copper-transporting ATP 55.4 30 0.001 21.9 5.6 56 50-111 5-64 (90)
237 2xmw_A PACS-N, cation-transpor 55.2 28 0.00097 20.1 6.9 55 51-111 6-63 (71)
238 1aw0_A Menkes copper-transport 53.3 31 0.0011 20.0 5.2 55 51-111 6-64 (72)
239 2l3m_A Copper-ION-binding prot 52.7 32 0.0011 20.0 6.9 56 50-111 7-66 (71)
240 1q8l_A Copper-transporting ATP 52.2 39 0.0013 20.8 7.3 57 49-111 10-70 (84)
241 1y3j_A Copper-transporting ATP 51.6 36 0.0012 20.3 5.3 55 51-111 6-64 (77)
242 2lfv_A Protein DAMX; cell divi 56.5 3.2 0.00011 28.7 0.0 62 49-115 25-88 (106)
243 1cpz_A Protein (COPZ); copper 50.6 33 0.0011 19.6 7.6 54 50-109 2-59 (68)
244 1p6t_A Potential copper-transp 50.0 60 0.0021 22.3 7.0 56 50-111 76-135 (151)
245 2npt_B Mitogen-activated prote 48.5 34 0.0012 23.0 4.7 51 56-114 35-86 (100)
246 2ofg_X Zinc-transporting ATPas 48.4 57 0.002 21.6 7.1 56 50-111 10-69 (111)
247 1osd_A MERP, hypothetical prot 48.0 39 0.0013 19.6 7.5 55 51-111 6-64 (72)
248 3cjk_B Copper-transporting ATP 47.9 41 0.0014 19.8 6.7 55 51-111 5-63 (75)
249 4bby_A Alkyldihydroxyacetoneph 47.8 13 0.00046 33.7 3.6 54 57-111 351-408 (658)
250 1yjr_A Copper-transporting ATP 44.2 46 0.0016 19.4 8.2 56 50-111 6-65 (75)
251 2ew9_A Copper-transporting ATP 44.2 51 0.0018 22.6 5.7 56 50-111 82-141 (149)
252 1vd2_A Protein kinase C, IOTA 44.2 45 0.0015 22.1 4.9 53 52-111 17-74 (89)
253 2w7a_A LINE-1 ORF1P; RNA-bindi 44.0 62 0.0021 21.9 5.6 32 93-124 64-98 (100)
254 1fvq_A Copper-transporting ATP 43.1 47 0.0016 19.2 5.6 55 51-111 5-62 (72)
255 1xn9_A 30S ribosomal protein S 42.7 56 0.0019 22.1 5.2 48 59-107 28-80 (101)
256 3uzu_A Ribosomal RNA small sub 42.3 10 0.00035 30.5 1.7 34 50-83 115-148 (279)
257 3u5c_Y RP50, 40S ribosomal pro 42.1 71 0.0024 22.9 5.9 47 59-106 33-84 (135)
258 1mwy_A ZNTA; open-faced beta-s 42.0 51 0.0018 19.3 8.1 55 51-111 6-62 (73)
259 3ced_A Methionine import ATP-b 41.5 40 0.0014 22.4 4.4 63 51-113 22-87 (98)
260 1ywx_A 30S ribosomal protein S 41.1 57 0.002 22.1 5.1 47 59-106 28-79 (102)
261 2jrh_A Mitogen-activated prote 40.9 41 0.0014 22.3 4.1 64 56-128 19-83 (94)
262 2v94_A RPS24, 30S ribosomal pr 39.6 63 0.0021 22.1 5.2 47 59-106 37-88 (107)
263 3fut_A Dimethyladenosine trans 39.4 19 0.00063 28.9 2.8 33 49-82 110-142 (271)
264 1x60_A Sporulation-specific N- 38.4 30 0.001 21.6 3.3 66 46-116 6-71 (79)
265 2c60_A Human mitogen-activated 38.1 39 0.0013 23.0 3.7 51 56-114 46-97 (111)
266 1opz_A Potential copper-transp 37.8 60 0.002 18.8 7.8 56 50-111 8-67 (76)
267 2qif_A Copper chaperone COPZ; 37.7 54 0.0019 18.3 6.8 54 51-110 5-62 (69)
268 2crl_A Copper chaperone for su 37.3 68 0.0023 20.8 5.1 53 51-110 22-75 (98)
269 3ts2_A Protein LIN-28 homolog 36.8 6.1 0.00021 28.9 -0.4 28 64-99 2-29 (148)
270 2xzm_P RPS24E; ribosome, trans 35.6 76 0.0026 23.1 5.3 47 59-106 31-82 (149)
271 3lo3_A Uncharacterized conserv 35.0 59 0.002 21.4 4.4 19 91-109 53-71 (94)
272 3tbg_A Cytochrome P450 2D6; mo 34.1 29 0.001 29.1 3.4 48 53-109 20-70 (479)
273 2kyz_A Heavy metal binding pro 34.1 31 0.001 20.1 2.7 52 51-109 4-55 (67)
274 2lea_A Serine/arginine-rich sp 33.2 9 0.00031 27.0 0.0 28 92-119 5-32 (135)
275 3e6i_A CYPIIE1, P450-J, cytoch 32.8 42 0.0014 28.1 4.2 50 51-109 18-70 (476)
276 1wvf_A 4-cresol dehydrogenase 32.7 39 0.0013 29.6 4.0 44 65-109 217-262 (520)
277 1qyr_A KSGA, high level kasuga 32.7 38 0.0013 26.6 3.7 30 50-79 91-120 (252)
278 3tqs_A Ribosomal RNA small sub 32.7 13 0.00044 29.5 0.8 33 51-83 98-130 (255)
279 4hhu_A OR280; engineered prote 32.4 1.2E+02 0.0042 21.2 5.7 70 51-125 44-128 (170)
280 2rop_A Copper-transporting ATP 32.3 1.5E+02 0.005 21.7 7.4 56 50-111 124-183 (202)
281 2ldi_A Zinc-transporting ATPas 32.1 71 0.0024 18.0 6.2 53 51-109 6-62 (71)
282 1jww_A Potential copper-transp 31.7 81 0.0028 18.6 5.2 55 51-111 6-64 (80)
283 2rf4_B DNA-directed RNA polyme 31.7 28 0.00097 22.9 2.2 33 42-74 12-44 (87)
284 3pm9_A Putative oxidoreductase 31.4 63 0.0022 28.0 5.1 52 59-111 196-251 (476)
285 3fjv_A Uncharacterized novel p 31.2 52 0.0018 25.1 4.0 55 62-123 66-127 (194)
286 3bgu_A Ferredoxin-like protein 30.9 1.3E+02 0.0043 20.5 6.9 55 51-106 24-88 (116)
287 3bb5_A Stress responsive alpha 30.8 1.3E+02 0.0044 20.6 7.5 56 51-106 23-89 (121)
288 2yko_A LINE-1 ORF1P; RNA-bindi 30.5 1.4E+02 0.0046 23.5 6.3 76 49-125 52-148 (233)
289 2d8m_A DNA-repair protein XRCC 30.3 53 0.0018 22.8 3.7 30 46-76 22-51 (129)
290 3swz_A Steroid 17-alpha-hydrox 30.3 54 0.0019 27.7 4.5 50 51-109 16-69 (494)
291 3ftd_A Dimethyladenosine trans 30.2 33 0.0011 26.9 2.9 30 50-79 96-125 (249)
292 2qrr_A Methionine import ATP-b 29.3 1.2E+02 0.0042 19.8 5.7 62 51-112 25-88 (101)
293 3iwl_A Copper transport protei 28.9 91 0.0031 18.2 5.0 52 50-109 4-56 (68)
294 2kkh_A Putative heavy metal tr 28.4 1.1E+02 0.0038 19.1 7.7 56 50-111 18-77 (95)
295 2g1d_A 30S ribosomal protein S 28.0 56 0.0019 22.0 3.3 46 59-105 29-79 (98)
296 2k2p_A Uncharacterized protein 27.9 61 0.0021 20.4 3.5 56 50-111 24-80 (85)
297 3pm0_A Cypib1, cytochrome P450 27.9 70 0.0024 26.9 4.8 49 52-109 18-68 (507)
298 2ns6_A Mobilization protein A; 26.9 1.3E+02 0.0044 22.6 5.6 48 51-101 72-127 (185)
299 3h7h_B Transcription elongatio 26.7 50 0.0017 22.5 2.9 25 90-114 50-74 (106)
300 2okq_A Hypothetical protein YB 26.1 1.6E+02 0.0055 21.1 5.5 46 66-111 50-110 (141)
301 2nzc_A Hypothetical protein; s 25.9 1.3E+02 0.0046 19.6 4.8 74 50-126 5-82 (86)
302 2cfx_A HTH-type transcriptiona 25.7 1.7E+02 0.0057 20.3 7.9 53 56-113 72-124 (144)
303 2e1c_A Putative HTH-type trans 25.6 1.9E+02 0.0066 20.9 6.4 52 56-112 94-145 (171)
304 1uta_A FTSN, MSGA, cell divisi 25.4 13 0.00046 23.6 -0.2 68 47-119 7-74 (81)
305 1i4w_A Mitochondrial replicati 25.3 54 0.0019 27.3 3.5 22 51-72 144-165 (353)
306 2lsl_A Telomerase associated p 30.6 16 0.00053 24.8 0.0 22 91-112 77-98 (137)
307 2uuu_A Alkyldihydroxyacetoneph 24.5 49 0.0017 29.6 3.2 49 63-112 287-339 (584)
308 2cyy_A Putative HTH-type trans 23.5 1.9E+02 0.0065 20.1 6.4 53 56-113 74-126 (151)
309 2exu_A Transcription initiatio 23.1 98 0.0033 23.7 4.3 26 90-115 148-173 (200)
310 3mfb_A Uncharacterized protein 23.0 1.3E+02 0.0044 22.0 4.7 36 61-96 3-41 (157)
311 3u5e_X 60S ribosomal protein L 21.5 1.1E+02 0.0037 22.1 3.9 58 51-111 80-139 (142)
312 4a17_R RPL23A, 60S ribosomal p 21.4 1E+02 0.0035 22.5 3.8 58 51-111 88-147 (150)
313 4id3_A DNA repair protein REV1 21.3 1E+02 0.0035 19.3 3.7 30 46-76 7-36 (92)
314 2xmm_A SSR2857 protein, ATX1; 21.0 1.2E+02 0.004 16.7 4.1 55 51-111 4-59 (64)
315 2qsw_A Methionine import ATP-b 21.0 1.3E+02 0.0046 19.6 4.2 62 51-112 25-88 (100)
316 2qyc_A Ferredoxin-like protein 20.7 1.8E+02 0.0063 18.9 6.6 54 52-106 8-71 (103)
317 2e5p_A Protein PHF1, PHD finge 20.7 36 0.0012 21.2 1.1 9 92-100 38-46 (68)
318 3dhx_A Methionine import ATP-b 20.3 1.1E+02 0.0036 20.5 3.6 55 60-114 32-88 (106)
319 2nn4_A Hypothetical protein YQ 20.3 34 0.0012 21.8 0.9 17 62-78 4-20 (72)
320 1x8d_A Hypothetical protein YI 20.1 1.8E+02 0.0062 19.5 4.7 34 64-100 27-60 (104)
321 2cs4_A Protein C12ORF2; GTP bi 20.0 42 0.0014 22.5 1.4 22 54-75 21-43 (95)
No 1
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.91 E-value=8.4e-24 Score=150.01 Aligned_cols=82 Identities=32% Similarity=0.466 Sum_probs=78.8
Q ss_pred CCCCeEEEeCCCCCCcHHHHHHHHccCCCeEEEEEeeCCCCCCcccEEEEEeecHHHHHHHHHHhCCceeCCeeeEEEec
Q 028130 47 NPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLITVEKA 126 (213)
Q Consensus 47 ~~~~~v~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~a 126 (213)
..+++|||+|||..+|+++|+++|++||+|..|.|+.++.++.++|||||+|.+.++|++||+.|||..|+|+.|.|++|
T Consensus 17 ~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~A 96 (99)
T 4fxv_A 17 FQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYA 96 (99)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cc
Q 028130 127 KR 128 (213)
Q Consensus 127 ~~ 128 (213)
++
T Consensus 97 kP 98 (99)
T 4fxv_A 97 RP 98 (99)
T ss_dssp CB
T ss_pred eC
Confidence 64
No 2
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.91 E-value=4.1e-23 Score=181.98 Aligned_cols=90 Identities=19% Similarity=0.309 Sum_probs=83.0
Q ss_pred CCCCCeEEEeCCCCCCcHHHHHHHHccCCCeEEEEEeeCCCCCCcccEEEEEeecHHHHHHHHHHhCCceeCCeeeEEEe
Q 028130 46 ANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLITVEK 125 (213)
Q Consensus 46 ~~~~~~v~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~ 125 (213)
..+.++|||+|||..||+++|+++|.+||.|+.|.|+.++.+++++|||||+|.+.++|++||+.|||+.|+|..|.|.+
T Consensus 99 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~ 178 (437)
T 3pgw_S 99 GDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDV 178 (437)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 34568999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred cccCCCCCCC
Q 028130 126 AKRSRGRTPT 135 (213)
Q Consensus 126 a~~~~~~~~~ 135 (213)
+.........
T Consensus 179 a~~~~~~~~~ 188 (437)
T 3pgw_S 179 ERGRTVKGWR 188 (437)
T ss_pred eCCCCCCCCC
Confidence 9877654443
No 3
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.89 E-value=1.1e-22 Score=144.71 Aligned_cols=90 Identities=30% Similarity=0.398 Sum_probs=83.7
Q ss_pred CCCCCCeEEEeCCCCCCcHHHHHHHHccCCCeEEEEEeeCCCCCCcccEEEEEeecHHHHHHHHHHhCCceeCCeeeEEE
Q 028130 45 AANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLITVE 124 (213)
Q Consensus 45 ~~~~~~~v~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~ 124 (213)
...+.++|||+|||..+++++|+++|++||+|..|.|+.++.++.++|||||+|.+.++|++||+.||+..|+|+.|.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 90 (103)
T 2cq0_A 11 RADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVE 90 (103)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 45678899999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred ecccCCCCCC
Q 028130 125 KAKRSRGRTP 134 (213)
Q Consensus 125 ~a~~~~~~~~ 134 (213)
+++++....+
T Consensus 91 ~a~~~~~~~~ 100 (103)
T 2cq0_A 91 WAKPSTNSGP 100 (103)
T ss_dssp ESSCCCCSCC
T ss_pred ECCCCCCCCC
Confidence 9988764443
No 4
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.89 E-value=2.5e-22 Score=145.72 Aligned_cols=93 Identities=22% Similarity=0.305 Sum_probs=85.3
Q ss_pred CCCCCCCCCeEEEeCCCCCCcHHHHHHHHccCCCeEEEEEeeCCCCCCcccEEEEEeecHHHHHHHHHHhCCceeCCeee
Q 028130 42 SPDAANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLI 121 (213)
Q Consensus 42 ~~~~~~~~~~v~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i 121 (213)
......+.++|||+|||..+++++|+++|.+||.|+.|.|+.++.++.++|||||+|.+.++|++||+.||+..|+|+.|
T Consensus 18 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 97 (115)
T 2cpz_A 18 SQKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRL 97 (115)
T ss_dssp CCCCCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEEC
T ss_pred cCcCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence 34455677899999999999999999999999999999999999899999999999999999999999999999999999
Q ss_pred EEEecccCCCCCC
Q 028130 122 TVEKAKRSRGRTP 134 (213)
Q Consensus 122 ~V~~a~~~~~~~~ 134 (213)
.|++++++....+
T Consensus 98 ~V~~a~~~~~~~~ 110 (115)
T 2cpz_A 98 KVQLKRSKNDSKS 110 (115)
T ss_dssp EEECCCCSCCCCC
T ss_pred EEEEcCCCCcCCC
Confidence 9999988765443
No 5
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.89 E-value=1.2e-22 Score=144.58 Aligned_cols=90 Identities=24% Similarity=0.373 Sum_probs=83.7
Q ss_pred CCCCCCCCeEEEeCCCCCCcHHHHHHHHccCCCeEEEEEeeCCCCCCcccEEEEEeecHHHHHHHHHHhCCceeCCeeeE
Q 028130 43 PDAANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLIT 122 (213)
Q Consensus 43 ~~~~~~~~~v~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~ 122 (213)
+....+.++|||+|||..+++++|+++|.+||.|..|.|+.++.++.++|||||+|.+.++|++||+.||+..|+|+.|.
T Consensus 7 ~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 86 (103)
T 2dnm_A 7 GPDVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELR 86 (103)
T ss_dssp SSCCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCE
T ss_pred CCCCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEE
Confidence 44556789999999999999999999999999999999999998999999999999999999999999999999999999
Q ss_pred EEecccCCCC
Q 028130 123 VEKAKRSRGR 132 (213)
Q Consensus 123 V~~a~~~~~~ 132 (213)
|++++.....
T Consensus 87 V~~a~~~~~~ 96 (103)
T 2dnm_A 87 VQVARYGRRD 96 (103)
T ss_dssp EEECSSCCSC
T ss_pred EEECCcCCCC
Confidence 9999876543
No 6
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.89 E-value=1.1e-22 Score=147.04 Aligned_cols=84 Identities=24% Similarity=0.363 Sum_probs=80.0
Q ss_pred CCCCCeEEEeCCCCCCcHHHHHHHHccCCCeEEEEEeeCCCCCCcccEEEEEeecHHHHHHHHHHhCCceeCCeeeEEEe
Q 028130 46 ANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLITVEK 125 (213)
Q Consensus 46 ~~~~~~v~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~ 125 (213)
+.+.++|||+|||..+++++|+++|++||.|+.|.|+.++.|++++|||||+|++.++|++||+.|||..|+|+.|.|++
T Consensus 3 ~~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~ 82 (110)
T 3s8s_A 3 QIPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQL 82 (110)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccC
Q 028130 126 AKRS 129 (213)
Q Consensus 126 a~~~ 129 (213)
+...
T Consensus 83 a~~~ 86 (110)
T 3s8s_A 83 DIKG 86 (110)
T ss_dssp CSTT
T ss_pred CCCC
Confidence 8654
No 7
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.89 E-value=2.7e-22 Score=140.45 Aligned_cols=86 Identities=29% Similarity=0.400 Sum_probs=81.4
Q ss_pred CCCCeEEEeCCCCCCcHHHHHHHHccCCCeEEEEEeeCCCCCCcccEEEEEeecHHHHHHHHHHhCCceeCCeeeEEEec
Q 028130 47 NPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLITVEKA 126 (213)
Q Consensus 47 ~~~~~v~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~a 126 (213)
.+.++|||+|||..+++++|+++|++||.|..|.|+.++.+++++|||||+|.+.++|++||+.||+..|+|+.|.|+++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 56789999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred ccCCCC
Q 028130 127 KRSRGR 132 (213)
Q Consensus 127 ~~~~~~ 132 (213)
..+...
T Consensus 83 ~~~~~~ 88 (95)
T 2dnz_A 83 TERLDG 88 (95)
T ss_dssp SCCCCC
T ss_pred ccccCC
Confidence 877643
No 8
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.89 E-value=8.3e-22 Score=142.83 Aligned_cols=91 Identities=24% Similarity=0.360 Sum_probs=84.4
Q ss_pred CCCCCCCCCCeEEEeCCCCCCcHHHHHHHHccCCCeEEEEEeeCCCCCCcccEEEEEeecHHHHHHHHHHhCCceeCCee
Q 028130 41 RSPDAANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRL 120 (213)
Q Consensus 41 ~~~~~~~~~~~v~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~ 120 (213)
.......+.++|||+|||..+++++|+++|.+||.|..|.|+.++.++.++|||||+|.+.++|++||+.||+..|+|+.
T Consensus 7 ~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 86 (115)
T 2dgo_A 7 GQKKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQ 86 (115)
T ss_dssp SSCCCSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEE
T ss_pred cCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 34455677889999999999999999999999999999999999889999999999999999999999999999999999
Q ss_pred eEEEecccCCC
Q 028130 121 ITVEKAKRSRG 131 (213)
Q Consensus 121 i~V~~a~~~~~ 131 (213)
|.|.+++.+..
T Consensus 87 l~V~~a~~~~~ 97 (115)
T 2dgo_A 87 IRTNWATRKPP 97 (115)
T ss_dssp CEEEESSCCCC
T ss_pred EEEEEccCCCC
Confidence 99999987754
No 9
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.89 E-value=4.2e-22 Score=140.65 Aligned_cols=90 Identities=21% Similarity=0.475 Sum_probs=82.9
Q ss_pred CCCCCCCCeEEEeCCCCCCcHHHHHHHHccCCCeEEEEEeeCCCCCCcccEEEEEeecHHHHHHHHHHhCCceeCCeeeE
Q 028130 43 PDAANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLIT 122 (213)
Q Consensus 43 ~~~~~~~~~v~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~ 122 (213)
+....+.++|||+|||..+++++|+++|.+||.|..|.|+.++.++.++|||||+|.+.++|++||+ ||+..|+|+.|.
T Consensus 4 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~ 82 (99)
T 2dgs_A 4 GSSGSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVE 82 (99)
T ss_dssp CCCCSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEE
Confidence 3445678899999999999999999999999999999999998899999999999999999999999 999999999999
Q ss_pred EEecccCCCCC
Q 028130 123 VEKAKRSRGRT 133 (213)
Q Consensus 123 V~~a~~~~~~~ 133 (213)
|.++.++....
T Consensus 83 V~~a~~~~~~~ 93 (99)
T 2dgs_A 83 VKRAEPRDSKS 93 (99)
T ss_dssp EEECCCCCCCC
T ss_pred EEECCCCcccC
Confidence 99998776443
No 10
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.89 E-value=3.2e-22 Score=142.70 Aligned_cols=89 Identities=30% Similarity=0.413 Sum_probs=83.2
Q ss_pred CCCCCCCCeEEEeCCCCCCcHHHHHHHHccCCCeEEEEEeeCCCCCCcccEEEEEeecHHHHHHHHHHhCCceeCCeeeE
Q 028130 43 PDAANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLIT 122 (213)
Q Consensus 43 ~~~~~~~~~v~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~ 122 (213)
+....+.++|||+|||..+++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|++||+.||+..|+|+.|.
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 88 (105)
T 1x5u_A 9 ISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIR 88 (105)
T ss_dssp CCCCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCE
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEE
Confidence 34557789999999999999999999999999999999999988999999999999999999999999999999999999
Q ss_pred EEecccCCC
Q 028130 123 VEKAKRSRG 131 (213)
Q Consensus 123 V~~a~~~~~ 131 (213)
|.++.....
T Consensus 89 v~~a~~~~~ 97 (105)
T 1x5u_A 89 VNKASAHNK 97 (105)
T ss_dssp EEETTTTSC
T ss_pred EEECCCCCc
Confidence 999987653
No 11
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.88 E-value=5e-22 Score=141.68 Aligned_cols=89 Identities=24% Similarity=0.358 Sum_probs=82.1
Q ss_pred CCCCCCeEEEeCCCCCCcHHHHHHHHccCCCeEEEEEeeCCCCCCcccEEEEEeecHHHHHHHHHHhCCceeCC---eee
Q 028130 45 AANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEG---RLI 121 (213)
Q Consensus 45 ~~~~~~~v~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g---~~i 121 (213)
...+.++|||+|||..+++++|+++|.+||.|..|.|+.++ ++.++|||||+|.+.++|++||+.||+..|.| +.|
T Consensus 11 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l 89 (105)
T 2dnh_A 11 RGGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSL 89 (105)
T ss_dssp SCCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccE
Confidence 34568999999999999999999999999999999999987 78999999999999999999999999999988 999
Q ss_pred EEEecccCCCCCC
Q 028130 122 TVEKAKRSRGRTP 134 (213)
Q Consensus 122 ~V~~a~~~~~~~~ 134 (213)
.|.++..+..+.+
T Consensus 90 ~V~~a~~~~~~~~ 102 (105)
T 2dnh_A 90 VVKFADTDKESGP 102 (105)
T ss_dssp EEEESCSSCCCSC
T ss_pred EEEECccCcccCC
Confidence 9999998775544
No 12
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.88 E-value=1.1e-22 Score=149.70 Aligned_cols=92 Identities=28% Similarity=0.360 Sum_probs=84.7
Q ss_pred CCCCCCCCCCeEEEeCCCCCCcHHHHHHHHccCCCeEEEEEeeCCCCCCcccEEEEEeecHHHHHHHHHHhCCceeCCee
Q 028130 41 RSPDAANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRL 120 (213)
Q Consensus 41 ~~~~~~~~~~~v~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~ 120 (213)
..+....+.++|||+|||..+++++|+++|.+||.|..|.|+.++.+++++|||||+|.+.++|++||+.|||..|+|+.
T Consensus 14 ~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 93 (126)
T 3ex7_B 14 PGPQRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQP 93 (126)
T ss_dssp CCBCCCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSB
T ss_pred CCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeE
Confidence 34555667889999999999999999999999999999999999889999999999999999999999999999999999
Q ss_pred eEEEecccCCCC
Q 028130 121 ITVEKAKRSRGR 132 (213)
Q Consensus 121 i~V~~a~~~~~~ 132 (213)
|.|+++..+...
T Consensus 94 l~v~~a~~~~~~ 105 (126)
T 3ex7_B 94 ISVDWCFVRGPP 105 (126)
T ss_dssp CEEEESEESSSC
T ss_pred EEEEEecCCCCC
Confidence 999999877533
No 13
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.88 E-value=2.5e-22 Score=142.53 Aligned_cols=90 Identities=36% Similarity=0.423 Sum_probs=83.4
Q ss_pred CCCCCCCeEEEeCCCCCCcHHHHHHHHccCCCeEEEEEeeCCCCCCcccEEEEEeecHHHHHHHHHHhCCceeCCeeeEE
Q 028130 44 DAANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLITV 123 (213)
Q Consensus 44 ~~~~~~~~v~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V 123 (213)
....+.++|||+|||..+++++|+++|.+||.|..|.|+.++.++.++|||||+|.+.++|++||+.||+..|+|+.|.|
T Consensus 7 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 86 (102)
T 2cqb_A 7 GMATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRV 86 (102)
T ss_dssp CSCCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CcCCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEE
Confidence 34567889999999999999999999999999999999999889999999999999999999999999999999999999
Q ss_pred EecccCCCCC
Q 028130 124 EKAKRSRGRT 133 (213)
Q Consensus 124 ~~a~~~~~~~ 133 (213)
.+++++....
T Consensus 87 ~~a~~~~~~~ 96 (102)
T 2cqb_A 87 NLAKPMRIKE 96 (102)
T ss_dssp EECCCCCCCC
T ss_pred EeCCCCCCCC
Confidence 9998776443
No 14
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.88 E-value=9.1e-22 Score=142.91 Aligned_cols=90 Identities=31% Similarity=0.480 Sum_probs=82.8
Q ss_pred CCCCCCCCCCCeEEEeCCCCCCcHHHHHHHHccCCCeEEEEEeeCCCCCCcccEEEEEeecHHHHHHHHHHhCCceeCCe
Q 028130 40 SRSPDAANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGR 119 (213)
Q Consensus 40 ~~~~~~~~~~~~v~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~ 119 (213)
...+....+.++|||+|||..+++++|+++|.+||.|+.|.|+.++.+++++|||||+|.+.++|++||+.|++ .|+|+
T Consensus 8 ~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~ 86 (116)
T 2cqd_A 8 MHGSQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGR 86 (116)
T ss_dssp CCCCCCSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTE
T ss_pred CCCCcCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCE
Confidence 34455567789999999999999999999999999999999999988999999999999999999999999998 89999
Q ss_pred eeEEEecccCC
Q 028130 120 LITVEKAKRSR 130 (213)
Q Consensus 120 ~i~V~~a~~~~ 130 (213)
.|.|+++....
T Consensus 87 ~l~V~~a~~~~ 97 (116)
T 2cqd_A 87 KANVNLAYLGA 97 (116)
T ss_dssp ECEEEESTTTC
T ss_pred EEEEEEcccCC
Confidence 99999997654
No 15
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.88 E-value=6.2e-22 Score=140.79 Aligned_cols=90 Identities=24% Similarity=0.371 Sum_probs=82.3
Q ss_pred CCCCCCCCCeEEEeCCCCCCcHHHHHHHHccCCCeEEEEEeeCCCCCCcccEEEEEeecHHHHHHHHHHhCCceeCCeee
Q 028130 42 SPDAANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLI 121 (213)
Q Consensus 42 ~~~~~~~~~~v~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i 121 (213)
......+.++|||+|||..+++++|+++|.+||.|..|.|+.+ ++.++|||||+|.+.++|++||+.||+..|+|+.|
T Consensus 8 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 85 (103)
T 2d9p_A 8 DRITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPL 85 (103)
T ss_dssp CCCCCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBC
T ss_pred CccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEE
Confidence 3344568899999999999999999999999999999999987 88899999999999999999999999999999999
Q ss_pred EEEecccCCCCC
Q 028130 122 TVEKAKRSRGRT 133 (213)
Q Consensus 122 ~V~~a~~~~~~~ 133 (213)
.|.+++.+....
T Consensus 86 ~V~~a~~~~~~~ 97 (103)
T 2d9p_A 86 YVALAQRKEERQ 97 (103)
T ss_dssp EEEECSSCCCCC
T ss_pred EEEEecccccCC
Confidence 999998876443
No 16
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.88 E-value=5.1e-22 Score=140.14 Aligned_cols=86 Identities=30% Similarity=0.457 Sum_probs=81.5
Q ss_pred CCCCCeEEEeCCCCCCcHHHHHHHHccCCCeEEEEEeeCCCCCCcccEEEEEeecHHHHHHHHHHhCCceeCCeeeEEEe
Q 028130 46 ANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLITVEK 125 (213)
Q Consensus 46 ~~~~~~v~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~ 125 (213)
..+.++|||+|||..+++++|+++|.+||+|..|.|+.++.++.++|||||+|.+.++|++||+.|||..|+|+.|.|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 84 (99)
T 1whw_A 5 SSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLP 84 (99)
T ss_dssp CCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 46778999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred cccCCC
Q 028130 126 AKRSRG 131 (213)
Q Consensus 126 a~~~~~ 131 (213)
++.+..
T Consensus 85 a~~~~~ 90 (99)
T 1whw_A 85 STIKKE 90 (99)
T ss_dssp CCCCST
T ss_pred cCCCcc
Confidence 988764
No 17
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.88 E-value=8.3e-22 Score=139.38 Aligned_cols=89 Identities=20% Similarity=0.347 Sum_probs=82.3
Q ss_pred CCCCCCCCCCeEEEeCCCCCCcHHHHHHHHccCCCeEEEEEeeCCCCCCcccEEEEEeecHHHHHHHHHHhCCceeCCee
Q 028130 41 RSPDAANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRL 120 (213)
Q Consensus 41 ~~~~~~~~~~~v~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~ 120 (213)
.......+.++|||+|||..+++++|+++|.+||.|..|.|+.+. +++++|||||+|.+.++|++||+.||+..|+|+.
T Consensus 9 ~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 87 (100)
T 2do4_A 9 FRYSTSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENI 87 (100)
T ss_dssp CCCSSCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCE
T ss_pred cCcccCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 344455778899999999999999999999999999999999988 8999999999999999999999999999999999
Q ss_pred eEEEecccCC
Q 028130 121 ITVEKAKRSR 130 (213)
Q Consensus 121 i~V~~a~~~~ 130 (213)
|.|++++++.
T Consensus 88 l~v~~a~~~~ 97 (100)
T 2do4_A 88 IKVAISNSGP 97 (100)
T ss_dssp EEEEECCCCS
T ss_pred EEEEECCCCC
Confidence 9999998765
No 18
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.88 E-value=4.5e-22 Score=139.19 Aligned_cols=86 Identities=34% Similarity=0.467 Sum_probs=80.9
Q ss_pred CCCCCCCCeEEEeCCCCCCcHHHHHHHHccCCCeEEEEEeeCCCCCCcccEEEEEeecHHHHHHHHHHhCCceeCCeeeE
Q 028130 43 PDAANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLIT 122 (213)
Q Consensus 43 ~~~~~~~~~v~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~ 122 (213)
.....+.++|||+|||..+++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|++||+.|||..|+|+.|.
T Consensus 9 ~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 88 (95)
T 2cqc_A 9 RANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIR 88 (95)
T ss_dssp CCSCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 34557788999999999999999999999999999999999998999999999999999999999999999999999999
Q ss_pred EEeccc
Q 028130 123 VEKAKR 128 (213)
Q Consensus 123 V~~a~~ 128 (213)
|++++.
T Consensus 89 v~~a~~ 94 (95)
T 2cqc_A 89 VSGPSS 94 (95)
T ss_dssp EECCSC
T ss_pred EEecCC
Confidence 999864
No 19
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.88 E-value=3.3e-22 Score=141.90 Aligned_cols=89 Identities=33% Similarity=0.541 Sum_probs=82.9
Q ss_pred CCCCCCCCeEEEeCCCCCCcHHHHHHHHccCCCeEEEEEeeCCCCCCcccEEEEEeecHHHHHHHHHHhCCceeCCeeeE
Q 028130 43 PDAANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLIT 122 (213)
Q Consensus 43 ~~~~~~~~~v~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~ 122 (213)
.....+.++|||+|||..+++++|+++|.+||+|..|.|+.++.++.++|||||+|.+.++|++||+.||+..|+|+.|.
T Consensus 6 ~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 85 (102)
T 1x5s_A 6 SGMASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIR 85 (102)
T ss_dssp CCCCCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCE
T ss_pred CCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 34456788999999999999999999999999999999999988999999999999999999999999999999999999
Q ss_pred EEecccCCC
Q 028130 123 VEKAKRSRG 131 (213)
Q Consensus 123 V~~a~~~~~ 131 (213)
|++++....
T Consensus 86 v~~a~~~~~ 94 (102)
T 1x5s_A 86 VDQAGKSSD 94 (102)
T ss_dssp EEEEECCCC
T ss_pred EEECCCCCC
Confidence 999987753
No 20
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.88 E-value=9.7e-22 Score=141.42 Aligned_cols=90 Identities=24% Similarity=0.392 Sum_probs=83.7
Q ss_pred CCCCCCCCeEEEeCCCCCCcHHHHHHHHccCCCeEEEEEeeCCCCCCcccEEEEEeecHHHHHHHHHHhC------Ccee
Q 028130 43 PDAANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLN------RSVL 116 (213)
Q Consensus 43 ~~~~~~~~~v~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~Ai~~l~------g~~i 116 (213)
+....+.++|||+|||..+++++|+++|.+||.|..|.|+.++.++.++|||||+|.+.++|++||+.|| +..|
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~ 88 (111)
T 1x4h_A 9 PSDVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKL 88 (111)
T ss_dssp CCCCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEES
T ss_pred CCcCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEE
Confidence 4456778899999999999999999999999999999999999899999999999999999999999999 9999
Q ss_pred CCeeeEEEecccCCCC
Q 028130 117 EGRLITVEKAKRSRGR 132 (213)
Q Consensus 117 ~g~~i~V~~a~~~~~~ 132 (213)
+|+.|.|.++.++...
T Consensus 89 ~g~~l~v~~a~~~~~~ 104 (111)
T 1x4h_A 89 DGRQLKVDLAVTRDEA 104 (111)
T ss_dssp SSCEEEEECCCCCCCC
T ss_pred cCEEEEEEECCCCccC
Confidence 9999999999877543
No 21
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.88 E-value=5.6e-22 Score=138.56 Aligned_cols=86 Identities=33% Similarity=0.483 Sum_probs=80.5
Q ss_pred CCCCCCCCCeEEEeCCCCCCcHHHHHHHHccCCCeEEEEEeeCCCCCCcccEEEEEeecHHHHHHHHHHhCCceeCCeee
Q 028130 42 SPDAANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLI 121 (213)
Q Consensus 42 ~~~~~~~~~~v~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i 121 (213)
.....++.++|||+|||..+++++|+++|++||+|..|.|+.++.++.++|||||+|.+.++|++||+.||+..|+|+.|
T Consensus 9 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 88 (94)
T 2e5h_A 9 SGGLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVI 88 (94)
T ss_dssp CCSCCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEE
T ss_pred CCCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEE
Confidence 34455678899999999999999999999999999999999998889999999999999999999999999999999999
Q ss_pred EEEecc
Q 028130 122 TVEKAK 127 (213)
Q Consensus 122 ~V~~a~ 127 (213)
.|++|+
T Consensus 89 ~v~~ak 94 (94)
T 2e5h_A 89 KASIAI 94 (94)
T ss_dssp EEEECC
T ss_pred EEEecC
Confidence 999985
No 22
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.88 E-value=8.7e-22 Score=140.79 Aligned_cols=90 Identities=19% Similarity=0.296 Sum_probs=83.1
Q ss_pred CCCCCCCCeEEEeCCCCCCcHHHHHHHHccCCCeEEEEEeeC-CCCCCcccEEEEEeecHHHHHHHHHHh-CCceeCCee
Q 028130 43 PDAANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTD-PRTRESCGFAFVTMETVEGADRCIKYL-NRSVLEGRL 120 (213)
Q Consensus 43 ~~~~~~~~~v~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~-~~t~~~~g~afV~f~~~~~a~~Ai~~l-~g~~i~g~~ 120 (213)
+....+.++|||+|||..+++++|+++|.+||.|..|.|+.+ ..++.++|||||+|.+.++|++||+.| |+..|+|+.
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~ 88 (107)
T 2cph_A 9 VPKKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRR 88 (107)
T ss_dssp SCCSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCB
T ss_pred cccCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCE
Confidence 344567889999999999999999999999999999999988 778999999999999999999999999 999999999
Q ss_pred eEEEecccCCCC
Q 028130 121 ITVEKAKRSRGR 132 (213)
Q Consensus 121 i~V~~a~~~~~~ 132 (213)
|.|++++.+...
T Consensus 89 l~v~~a~~~~~~ 100 (107)
T 2cph_A 89 LVLEWADSEVTV 100 (107)
T ss_dssp CEEEECCCCCCC
T ss_pred EEEEeCCCCCCC
Confidence 999999887643
No 23
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.88 E-value=3.5e-22 Score=137.55 Aligned_cols=84 Identities=26% Similarity=0.385 Sum_probs=77.1
Q ss_pred CCCCCeEEEeCCCCCCcHHHHHHHHccCCCeEEEEEeeCCCCCCcccEEEEEeecHHHHHHHHHHhCCceeCCeeeEEEe
Q 028130 46 ANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLITVEK 125 (213)
Q Consensus 46 ~~~~~~v~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~ 125 (213)
..+.++|||+|||..+++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|++||+.|||..|+|+.|.|.+
T Consensus 3 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (87)
T 3bs9_A 3 LGSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNW 82 (87)
T ss_dssp ---CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEe
Confidence 35678999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred cccC
Q 028130 126 AKRS 129 (213)
Q Consensus 126 a~~~ 129 (213)
++.+
T Consensus 83 a~~k 86 (87)
T 3bs9_A 83 ATRK 86 (87)
T ss_dssp EC--
T ss_pred cCCC
Confidence 9765
No 24
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.88 E-value=3.5e-22 Score=142.69 Aligned_cols=90 Identities=29% Similarity=0.377 Sum_probs=83.5
Q ss_pred CCCCCCCCCCeEEEeCCCCCCcHHHHHHHHccCCCeEEEEEeeCCCCCCcccEEEEEeecHHHHHHHHHHhCCceeCCee
Q 028130 41 RSPDAANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRL 120 (213)
Q Consensus 41 ~~~~~~~~~~~v~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~ 120 (213)
..+....++++|||+|||..+++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|++||+.|||..|+|+.
T Consensus 15 ~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 94 (106)
T 1p27_B 15 PGPQRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQP 94 (106)
T ss_dssp CCBCCBTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSB
T ss_pred CCCCCCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcE
Confidence 34445567789999999999999999999999999999999999989999999999999999999999999999999999
Q ss_pred eEEEecccCC
Q 028130 121 ITVEKAKRSR 130 (213)
Q Consensus 121 i~V~~a~~~~ 130 (213)
|.|+++..+.
T Consensus 95 l~V~~a~~~~ 104 (106)
T 1p27_B 95 ISVDWCFVRG 104 (106)
T ss_dssp CEEEESEESS
T ss_pred EEEEeecCCC
Confidence 9999998764
No 25
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.88 E-value=7e-22 Score=150.82 Aligned_cols=88 Identities=23% Similarity=0.427 Sum_probs=82.6
Q ss_pred CCCCCCCCeEEEeCCCCCCcHHHHHHHHccCCCeEEEEEeeCCCCCCcccEEEEEeecHHHHHHHHHHhCCceeCCeeeE
Q 028130 43 PDAANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLIT 122 (213)
Q Consensus 43 ~~~~~~~~~v~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~ 122 (213)
.....+.++|||+|||..+++++|+++|++||+|+.|.|+.++.++.++|||||+|.+.++|++||+.||+..|+|+.|.
T Consensus 33 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 112 (156)
T 1h2v_Z 33 EKLLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIR 112 (156)
T ss_dssp CTTTTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECE
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 34456789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecccCC
Q 028130 123 VEKAKRSR 130 (213)
Q Consensus 123 V~~a~~~~ 130 (213)
|++++...
T Consensus 113 V~~a~~~~ 120 (156)
T 1h2v_Z 113 TDWDAGFK 120 (156)
T ss_dssp EEEESCCC
T ss_pred EEECCCCC
Confidence 99998754
No 26
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.88 E-value=3.9e-22 Score=139.87 Aligned_cols=86 Identities=23% Similarity=0.416 Sum_probs=81.0
Q ss_pred CCCCeEEEeCCCCCCcHHHHHHHHccCCCeEEE-EEeeCCCCCCcccEEEEEeecHHHHHHHHHHhCCceeCCeeeEEEe
Q 028130 47 NPGNNLYVTGLSTRVTNADLEKFFGGEGKVTEC-HLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLITVEK 125 (213)
Q Consensus 47 ~~~~~v~V~nLp~~~t~~~L~~~F~~~G~i~~~-~i~~~~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~ 125 (213)
.+.++|||+|||..+++++|+++|++||.|..| .|+.++.++.++|||||+|.+.++|++||+.||+..|+|+.|.|++
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 567899999999999999999999999999999 9999988999999999999999999999999999999999999999
Q ss_pred cccCCCC
Q 028130 126 AKRSRGR 132 (213)
Q Consensus 126 a~~~~~~ 132 (213)
+.++...
T Consensus 83 a~~~~~~ 89 (96)
T 1x5t_A 83 AFKKDSK 89 (96)
T ss_dssp SCCCCCC
T ss_pred ecccCCC
Confidence 9877533
No 27
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=1e-21 Score=141.89 Aligned_cols=91 Identities=27% Similarity=0.408 Sum_probs=83.8
Q ss_pred CCCCCCCCCeEEEeCCCCCCcHHHHHHHHccCCCeE--------EEEEeeCCCCCCcccEEEEEeecHHHHHHHHHHhCC
Q 028130 42 SPDAANPGNNLYVTGLSTRVTNADLEKFFGGEGKVT--------ECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNR 113 (213)
Q Consensus 42 ~~~~~~~~~~v~V~nLp~~~t~~~L~~~F~~~G~i~--------~~~i~~~~~t~~~~g~afV~f~~~~~a~~Ai~~l~g 113 (213)
.+....+.++|||+|||..+++++|+++|.+||.|. .|.|+.++.++.++|||||+|.+.++|++||+.||+
T Consensus 8 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g 87 (113)
T 2cpe_A 8 DPDEDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDG 87 (113)
T ss_dssp CCCCCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTT
T ss_pred CcccCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCC
Confidence 345567789999999999999999999999999998 699999988999999999999999999999999999
Q ss_pred ceeCCeeeEEEecccCCCC
Q 028130 114 SVLEGRLITVEKAKRSRGR 132 (213)
Q Consensus 114 ~~i~g~~i~V~~a~~~~~~ 132 (213)
..|+|+.|.|.+++.+...
T Consensus 88 ~~~~g~~l~V~~a~~~~~~ 106 (113)
T 2cpe_A 88 KDFQGSKLKVSLARKKPPM 106 (113)
T ss_dssp CEETTEECEEECSSCCCCS
T ss_pred CccCCCEEEEEECCCCCCC
Confidence 9999999999999877543
No 28
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.87 E-value=1.2e-21 Score=139.40 Aligned_cols=88 Identities=20% Similarity=0.370 Sum_probs=81.1
Q ss_pred CCCCCCCCCeEEEeCCCCCCcHHHHHHHHccCCCeEEEEEeeCCCCCCcccEEEEEeecHHHHHHHHHHhCCceeCCeee
Q 028130 42 SPDAANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLI 121 (213)
Q Consensus 42 ~~~~~~~~~~v~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i 121 (213)
.+.+..+.++|||+|||..+++++|+++|.+|| |..|.|+.++.+++++|||||+|.+.++|++|| .||+..|+|+.|
T Consensus 8 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l 85 (103)
T 2dng_A 8 KELPTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSL 85 (103)
T ss_dssp CCCCSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEEC
T ss_pred CCCCCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEE
Confidence 344556788999999999999999999999997 999999999989999999999999999999999 799999999999
Q ss_pred EEEecccCCC
Q 028130 122 TVEKAKRSRG 131 (213)
Q Consensus 122 ~V~~a~~~~~ 131 (213)
.|+++..+..
T Consensus 86 ~V~~a~~~~~ 95 (103)
T 2dng_A 86 RVDIAEGRKQ 95 (103)
T ss_dssp EEEECCCCCC
T ss_pred EEEEecCCCC
Confidence 9999987653
No 29
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.87 E-value=3.3e-22 Score=148.38 Aligned_cols=89 Identities=34% Similarity=0.469 Sum_probs=83.4
Q ss_pred CCCCCCCCCeEEEeCCCCCCcHHHHHHHHccCCCeEEEEEeeCCCCCCcccEEEEEeecHHHHHHHHHHhCCceeCCeee
Q 028130 42 SPDAANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLI 121 (213)
Q Consensus 42 ~~~~~~~~~~v~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i 121 (213)
.....++.++|||+|||..+++++|+++|++||+|..|.|+.++.++.++|||||+|.+.++|++||+.|||..|+|+.|
T Consensus 39 ~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l 118 (129)
T 2kxn_B 39 NRANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRI 118 (129)
T ss_dssp CSSCCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCC
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 44556778999999999999999999999999999999999998899999999999999999999999999999999999
Q ss_pred EEEecccCC
Q 028130 122 TVEKAKRSR 130 (213)
Q Consensus 122 ~V~~a~~~~ 130 (213)
.|++++.+.
T Consensus 119 ~V~~a~~~~ 127 (129)
T 2kxn_B 119 RVDFSITKR 127 (129)
T ss_dssp EESCCSSSS
T ss_pred EEEEecCCC
Confidence 999998765
No 30
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.87 E-value=9.4e-22 Score=147.18 Aligned_cols=90 Identities=26% Similarity=0.355 Sum_probs=83.4
Q ss_pred CCCCCCCCeEEEeCCCCCCcHHHHHHHHccCCCeEEEEEeeCCCCCCcccEEEEEeecHHHHHHHHHHhCCceeCCeeeE
Q 028130 43 PDAANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLIT 122 (213)
Q Consensus 43 ~~~~~~~~~v~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~ 122 (213)
.....+.++|||+|||..+++++|+++|++||+|+.|.|+.++.+++++|||||+|.+.++|++||+.|||..|+|+.|.
T Consensus 36 ~~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 115 (139)
T 1u6f_A 36 NPEPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLK 115 (139)
T ss_dssp SCCTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 34456678999999999999999999999999999999999998999999999999999999999999999999999999
Q ss_pred EEecccCCCC
Q 028130 123 VEKAKRSRGR 132 (213)
Q Consensus 123 V~~a~~~~~~ 132 (213)
|.+++.....
T Consensus 116 v~~a~~~~~~ 125 (139)
T 1u6f_A 116 VALAASGHQR 125 (139)
T ss_dssp EEESSCCCCC
T ss_pred EEECCCCCCC
Confidence 9999877544
No 31
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.87 E-value=5.4e-22 Score=136.00 Aligned_cols=82 Identities=38% Similarity=0.465 Sum_probs=78.5
Q ss_pred CCCCCeEEEeCCCCCCcHHHHHHHHccCCCeEEEEEeeCCCCCCcccEEEEEeecHHHHHHHHHHhCCceeCCeeeEEEe
Q 028130 46 ANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLITVEK 125 (213)
Q Consensus 46 ~~~~~~v~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~ 125 (213)
..+.++|||+|||..+++++|+++|++||.|..|.|+.+..++.++|||||+|.+.++|++||+.|||..|+|+.|.|++
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 83 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 83 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 46788999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred cc
Q 028130 126 AK 127 (213)
Q Consensus 126 a~ 127 (213)
++
T Consensus 84 ak 85 (85)
T 3mdf_A 84 AK 85 (85)
T ss_dssp CC
T ss_pred cC
Confidence 85
No 32
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=2.7e-21 Score=137.45 Aligned_cols=92 Identities=30% Similarity=0.487 Sum_probs=81.8
Q ss_pred CCCCCCCCCCeEEEeCCCCCCcHHHHHHHHccCCCeEEEEEeeCCCCCCcccEEEEEeecHHHHHHHHHHhCCceeCCee
Q 028130 41 RSPDAANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRL 120 (213)
Q Consensus 41 ~~~~~~~~~~~v~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~ 120 (213)
..+....+.++|||+|||..+++++|+++|.+||.|..|.|+.+.. .++|||||+|.+.++|++||+.||+..|+|+.
T Consensus 7 ~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 84 (103)
T 2cq3_A 7 GNSESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGRK 84 (103)
T ss_dssp CCSCCSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 3445567789999999999999999999999999999999998753 37899999999999999999999999999999
Q ss_pred eEEEecccCCCCCC
Q 028130 121 ITVEKAKRSRGRTP 134 (213)
Q Consensus 121 i~V~~a~~~~~~~~ 134 (213)
|.|.++..+.....
T Consensus 85 l~v~~a~~~~~~~~ 98 (103)
T 2cq3_A 85 IEVNNATARVMTNS 98 (103)
T ss_dssp CEEEECCSSCCCCC
T ss_pred EEEEEcccCCCCCC
Confidence 99999988764433
No 33
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.87 E-value=8.6e-22 Score=139.12 Aligned_cols=88 Identities=24% Similarity=0.351 Sum_probs=82.0
Q ss_pred CCCCCCCCCCCeEEEeCCCCCCcHHHHHHHHccCCCeEE--------EEEeeCCCCCCcccEEEEEeecHHHHHHHHHHh
Q 028130 40 SRSPDAANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTE--------CHLVTDPRTRESCGFAFVTMETVEGADRCIKYL 111 (213)
Q Consensus 40 ~~~~~~~~~~~~v~V~nLp~~~t~~~L~~~F~~~G~i~~--------~~i~~~~~t~~~~g~afV~f~~~~~a~~Ai~~l 111 (213)
+..+.+..+.++|||+|||..+++++|+++|++||.|.. |.|+.++.++.++|||||+|.+.++|++||+.|
T Consensus 4 ~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l 83 (99)
T 2la6_A 4 HHHHHSHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWF 83 (99)
T ss_dssp SCSCCSCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHH
T ss_pred CCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHh
Confidence 344556678899999999999999999999999999999 999999889999999999999999999999999
Q ss_pred CCceeCCeeeEEEecc
Q 028130 112 NRSVLEGRLITVEKAK 127 (213)
Q Consensus 112 ~g~~i~g~~i~V~~a~ 127 (213)
||..|+|+.|.|++|+
T Consensus 84 ~g~~~~g~~l~V~~A~ 99 (99)
T 2la6_A 84 DGKEFSGNPIKVSFAT 99 (99)
T ss_dssp TTCBSSSSBCEEEECC
T ss_pred CCCEeCCcEEEEEecC
Confidence 9999999999999974
No 34
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.87 E-value=1.1e-21 Score=133.87 Aligned_cols=82 Identities=23% Similarity=0.351 Sum_probs=78.3
Q ss_pred CCeEEEeCCCCCCcHHHHHHHHccCCCeEEEEEeeCCCCCCcccEEEEEeecHHHHHHHHHHhCCceeCCeeeEEEeccc
Q 028130 49 GNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLITVEKAKR 128 (213)
Q Consensus 49 ~~~v~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~a~~ 128 (213)
+++|||+|||..+++++|+++|.+||.|..|.|+.+..++.++|||||+|.+.++|++||+.|||..|+|+.|.|.++++
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 80 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence 36899999999999999999999999999999999988999999999999999999999999999999999999999987
Q ss_pred CC
Q 028130 129 SR 130 (213)
Q Consensus 129 ~~ 130 (213)
+.
T Consensus 81 ~~ 82 (83)
T 3md1_A 81 LE 82 (83)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 35
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=3e-21 Score=138.63 Aligned_cols=88 Identities=25% Similarity=0.344 Sum_probs=78.3
Q ss_pred CCCCCCCCCCeEEEeCCCCCCcHHHHHHHHccCCCeEEEEEeeCCCCCCcccEEEEEeecHHHHHHHHHHhCCceeCCee
Q 028130 41 RSPDAANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRL 120 (213)
Q Consensus 41 ~~~~~~~~~~~v~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~ 120 (213)
..+....+.++|||+|||..+++++|+++|.+||.|..|.|+. ++.++|||||+|.+.++|++||+.||+..|+|+.
T Consensus 14 ~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 90 (109)
T 1x4a_A 14 IRGPAGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKN---RRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYR 90 (109)
T ss_dssp SSCCCCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECC---SSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEE---CCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeE
Confidence 3344556788999999999999999999999999999999865 4457899999999999999999999999999999
Q ss_pred eEEEecccCCC
Q 028130 121 ITVEKAKRSRG 131 (213)
Q Consensus 121 i~V~~a~~~~~ 131 (213)
|.|++++....
T Consensus 91 l~V~~a~~~~~ 101 (109)
T 1x4a_A 91 LRVEFPRSGRG 101 (109)
T ss_dssp CEEECCCCCCC
T ss_pred EEEEEcccCCC
Confidence 99999987653
No 36
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.87 E-value=6.8e-22 Score=142.20 Aligned_cols=91 Identities=26% Similarity=0.326 Sum_probs=83.8
Q ss_pred CCCCCCCCCCCeEEEeCCCCCCcHHHHHHHHccCCCeEEEEEeeCCCCCCcccEEEEEeecHHHHHHHHHHhCCceeCCe
Q 028130 40 SRSPDAANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGR 119 (213)
Q Consensus 40 ~~~~~~~~~~~~v~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~ 119 (213)
...+....+.++|||+|||..+++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|++||..|||..|+|+
T Consensus 17 ~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~ 96 (110)
T 1oo0_B 17 EPGPQRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQ 96 (110)
T ss_dssp -CCBCCBTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCc
Confidence 34445567788999999999999999999999999999999999988999999999999999999999999999999999
Q ss_pred eeEEEecccCC
Q 028130 120 LITVEKAKRSR 130 (213)
Q Consensus 120 ~i~V~~a~~~~ 130 (213)
.|.|.++..+.
T Consensus 97 ~l~V~~a~~~~ 107 (110)
T 1oo0_B 97 TIQVDWCFVKG 107 (110)
T ss_dssp ECEEEESEESS
T ss_pred EEEEEEcccCC
Confidence 99999998765
No 37
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.87 E-value=1.3e-21 Score=142.49 Aligned_cols=85 Identities=34% Similarity=0.560 Sum_probs=80.0
Q ss_pred CCCCCCeEEEeCCCCCCcHHHHHHHHccCCCeEEEEEeeCCCCCCcccEEEEEeecHHHHHHHHHHhCCceeCCeeeEEE
Q 028130 45 AANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLITVE 124 (213)
Q Consensus 45 ~~~~~~~v~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~ 124 (213)
+.++.++|||+|||..+++++|+++|++||.|+.|.|+.+. ++.++|||||+|.+.++|++||+.|||..|+|+.|.|+
T Consensus 3 e~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~ 81 (116)
T 2fy1_A 3 EADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVE 81 (116)
T ss_dssp TTCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34667899999999999999999999999999999999988 89999999999999999999999999999999999999
Q ss_pred ecccCC
Q 028130 125 KAKRSR 130 (213)
Q Consensus 125 ~a~~~~ 130 (213)
+++...
T Consensus 82 ~a~~~~ 87 (116)
T 2fy1_A 82 QAKKPS 87 (116)
T ss_dssp ECCCSS
T ss_pred ECCCCC
Confidence 998664
No 38
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=1.6e-21 Score=139.01 Aligned_cols=86 Identities=21% Similarity=0.407 Sum_probs=79.7
Q ss_pred CCCCCCCeEEEeCCCCCCcHHHHHHHHccCCCeEEEEEeeCCCC-CCcccEEEEEeecHHHHHHHHHHhCCceeCCeeeE
Q 028130 44 DAANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRT-RESCGFAFVTMETVEGADRCIKYLNRSVLEGRLIT 122 (213)
Q Consensus 44 ~~~~~~~~v~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~t-~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~ 122 (213)
.+..+.++|||+|||..+++++|+++|.+|| |+.|.|+.++.+ +.++|||||+|.+.++|++|| .||+..|+|+.|.
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~ 87 (104)
T 1wi8_A 10 LPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIR 87 (104)
T ss_dssp CCSSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECE
T ss_pred CCCCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEE
Confidence 3446678999999999999999999999999 999999999887 899999999999999999999 8999999999999
Q ss_pred EEecccCCC
Q 028130 123 VEKAKRSRG 131 (213)
Q Consensus 123 V~~a~~~~~ 131 (213)
|+++..+..
T Consensus 88 V~~a~~~~~ 96 (104)
T 1wi8_A 88 VDVADQAQD 96 (104)
T ss_dssp EEECCCCCC
T ss_pred EEEccCCCC
Confidence 999987653
No 39
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.87 E-value=1.1e-21 Score=138.10 Aligned_cols=86 Identities=22% Similarity=0.419 Sum_probs=79.7
Q ss_pred CCCCeEEEeCCCCCCcHHHHHHHHccCCCeEEEEEeeCCC---CCCcccEEEEEeecHHHHHHHHHHhCCceeCCeeeEE
Q 028130 47 NPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPR---TRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLITV 123 (213)
Q Consensus 47 ~~~~~v~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~---t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V 123 (213)
.+.++|||+|||..+++++|+++|++||.|..|.|+.+.. ++.++|||||+|.+.++|++||+.||+..|+|+.|.|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 5678999999999999999999999999999999998776 6688999999999999999999999999999999999
Q ss_pred EecccCCCC
Q 028130 124 EKAKRSRGR 132 (213)
Q Consensus 124 ~~a~~~~~~ 132 (213)
.+++.....
T Consensus 83 ~~a~~~~~~ 91 (98)
T 2cpf_A 83 RISERATKP 91 (98)
T ss_dssp ECSSCSSCC
T ss_pred EEccCCCCC
Confidence 999877543
No 40
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.87 E-value=9.1e-21 Score=137.02 Aligned_cols=88 Identities=25% Similarity=0.342 Sum_probs=81.0
Q ss_pred CCCCCCCCCeEEEeCCCCCCcHHHHHHHHccCCCeEEEEEeeCCCCCCcccEEEEEeecHHHHHHHHHHhCCceeCCeee
Q 028130 42 SPDAANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLI 121 (213)
Q Consensus 42 ~~~~~~~~~~v~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i 121 (213)
......+.++|||+|||..+++++|+++|.+||.|+.|.|+.++ +++++|||||+|.+.++|++||+.||+..|+|+.|
T Consensus 8 ~~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 86 (114)
T 2do0_A 8 ALQAGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPM 86 (114)
T ss_dssp CCCCCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CcccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEE
Confidence 34455678999999999999999999999999999999999987 68999999999999999999999999999999999
Q ss_pred EEEecccCC
Q 028130 122 TVEKAKRSR 130 (213)
Q Consensus 122 ~V~~a~~~~ 130 (213)
.|+++....
T Consensus 87 ~v~~a~~~~ 95 (114)
T 2do0_A 87 HVKMDERAL 95 (114)
T ss_dssp EEEECSCCC
T ss_pred EEEEcccCC
Confidence 999987654
No 41
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.87 E-value=5e-22 Score=139.81 Aligned_cols=86 Identities=19% Similarity=0.325 Sum_probs=78.5
Q ss_pred CCCCCCCCeEEEeCCCCCCcHHHHHHHHccCCC--eEEEEEeeCCCCCCcccEEEEEeecHHHHHHHHHHhCCc----ee
Q 028130 43 PDAANPGNNLYVTGLSTRVTNADLEKFFGGEGK--VTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRS----VL 116 (213)
Q Consensus 43 ~~~~~~~~~v~V~nLp~~~t~~~L~~~F~~~G~--i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~----~i 116 (213)
......-.+|||+|||+.+|+++|+++|++||. |..|.|+.++.+++++|||||+|.+.++|++||+.|||. .|
T Consensus 3 ~~~~~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i 82 (95)
T 2lkz_A 3 HHHHHHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKI 82 (95)
T ss_dssp CCSSCCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEE
T ss_pred cccCCccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceE
Confidence 345566679999999999999999999999995 678999999999999999999999999999999999997 48
Q ss_pred CCeeeEEEeccc
Q 028130 117 EGRLITVEKAKR 128 (213)
Q Consensus 117 ~g~~i~V~~a~~ 128 (213)
+|++|.|+||+.
T Consensus 83 ~Gr~i~V~~Aks 94 (95)
T 2lkz_A 83 DGKTIGVDFAKS 94 (95)
T ss_dssp TTEEEEEEECCC
T ss_pred CCEEEEEEEccC
Confidence 999999999874
No 42
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.87 E-value=1.4e-21 Score=137.24 Aligned_cols=83 Identities=22% Similarity=0.410 Sum_probs=79.4
Q ss_pred CCCeEEEeCCCCCCcHHHHHHHHccCCCeEEEEEeeCCCCCCcccEEEEEeecHHHHHHHHHHhCCceeCCeeeEEEecc
Q 028130 48 PGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLITVEKAK 127 (213)
Q Consensus 48 ~~~~v~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~a~ 127 (213)
|.++|||+|||..+++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|++||+.|||..|+|+.|.|.++.
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 80 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSS 80 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcC
Confidence 46899999999999999999999999999999999998899999999999999999999999999999999999999998
Q ss_pred cCC
Q 028130 128 RSR 130 (213)
Q Consensus 128 ~~~ 130 (213)
.+.
T Consensus 81 ~~~ 83 (96)
T 2x1f_A 81 NSD 83 (96)
T ss_dssp CSS
T ss_pred CCC
Confidence 765
No 43
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.87 E-value=2e-22 Score=140.66 Aligned_cols=83 Identities=19% Similarity=0.310 Sum_probs=76.7
Q ss_pred CCeEEEeCCCCCCcHHHHHHHHccCC-CeEEEEEeeCCCCCCcccEEEEEeecHHHHHHHHHHhC-CceeCCeeeEEEec
Q 028130 49 GNNLYVTGLSTRVTNADLEKFFGGEG-KVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLN-RSVLEGRLITVEKA 126 (213)
Q Consensus 49 ~~~v~V~nLp~~~t~~~L~~~F~~~G-~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~Ai~~l~-g~~i~g~~i~V~~a 126 (213)
+++|||+|||..+|+++|+++|++|| +|..|.|+.++.++.++|||||+|.+.++|++||+.|+ +..|+|+.|.|+++
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 36899999999999999999999999 89999999999999999999999999999999999874 56799999999999
Q ss_pred ccCCC
Q 028130 127 KRSRG 131 (213)
Q Consensus 127 ~~~~~ 131 (213)
.++..
T Consensus 81 ~~~~~ 85 (91)
T 2lxi_A 81 DPKPK 85 (91)
T ss_dssp CSCCC
T ss_pred CCCCC
Confidence 87653
No 44
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.87 E-value=1.1e-21 Score=140.06 Aligned_cols=89 Identities=22% Similarity=0.245 Sum_probs=82.3
Q ss_pred CCCCCCCCeEEEeCCCCCCcHHHHHHHHccCCCeEEEEEeeCCCCCCcccEEEEEeecHHHHHHHHHHhCCcee---CCe
Q 028130 43 PDAANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVL---EGR 119 (213)
Q Consensus 43 ~~~~~~~~~v~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i---~g~ 119 (213)
+....+.++|||+|||..+++++|+++|++||+|..|.|+.++.+++++|||||+|.+.++|++||+.||+..| .|+
T Consensus 7 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~ 86 (106)
T 2dgp_A 7 GMKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNR 86 (106)
T ss_dssp SCCCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSS
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCc
Confidence 34456778999999999999999999999999999999999998999999999999999999999999999987 899
Q ss_pred eeEEEecccCCC
Q 028130 120 LITVEKAKRSRG 131 (213)
Q Consensus 120 ~i~V~~a~~~~~ 131 (213)
.|.|.++..+..
T Consensus 87 ~l~v~~a~~~~~ 98 (106)
T 2dgp_A 87 PIQVKPADSESR 98 (106)
T ss_dssp CCEEEECCCCSC
T ss_pred eEEEEECCcccc
Confidence 999999987653
No 45
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=4.7e-21 Score=136.19 Aligned_cols=89 Identities=20% Similarity=0.330 Sum_probs=80.0
Q ss_pred CCCCCCCCCeEEEeCCCCCCcHHHHHHHHccCCCeEEEEEeeCCCCCCcccEEEEEeecHHHHHHHHHHhCCceeCCeee
Q 028130 42 SPDAANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLI 121 (213)
Q Consensus 42 ~~~~~~~~~~v~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i 121 (213)
......+.++|||+|||..+++++|+++|++||.|..|.|+.+..+ .+|||||+|.+.++|++||+.||+..|.|+.|
T Consensus 8 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 85 (103)
T 2cqi_A 8 MMEDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS--NDPYCFVEFYEHRDAAAALAAMNGRKILGKEV 85 (103)
T ss_dssp CCCCSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCS--SCCEEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred CCCCCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCC--CCCEEEEEECCHHHHHHHHHHhCCCCcCCCeE
Confidence 3445677899999999999999999999999999999999987543 57999999999999999999999999999999
Q ss_pred EEEecccCCCC
Q 028130 122 TVEKAKRSRGR 132 (213)
Q Consensus 122 ~V~~a~~~~~~ 132 (213)
.|.+++.....
T Consensus 86 ~V~~a~~~~~~ 96 (103)
T 2cqi_A 86 KVNWATTPSSQ 96 (103)
T ss_dssp EEEECCCTTCC
T ss_pred EEEECCCCccc
Confidence 99999876543
No 46
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.86 E-value=1.2e-21 Score=138.22 Aligned_cols=87 Identities=17% Similarity=0.355 Sum_probs=81.5
Q ss_pred CCCCCCCeEEEeCCCCCCcHHHHHHHHccCCCeE-EEEEeeCCCCCCcccEEEEEeecHHHHHHHHHHhCCceeCCee--
Q 028130 44 DAANPGNNLYVTGLSTRVTNADLEKFFGGEGKVT-ECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRL-- 120 (213)
Q Consensus 44 ~~~~~~~~v~V~nLp~~~t~~~L~~~F~~~G~i~-~~~i~~~~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~-- 120 (213)
....+.++|||+|||..+++++|+++|.+||.|. .|.|+.++.++.++|||||+|.+.++|++||+.|||..|.|..
T Consensus 4 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~ 83 (99)
T 2div_A 4 GSSGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPA 83 (99)
T ss_dssp CCCSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSC
T ss_pred CCCCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcc
Confidence 4456789999999999999999999999999999 9999999989999999999999999999999999999999999
Q ss_pred --eEEEecccCC
Q 028130 121 --ITVEKAKRSR 130 (213)
Q Consensus 121 --i~V~~a~~~~ 130 (213)
|.|++++...
T Consensus 84 ~~l~v~~a~~~~ 95 (99)
T 2div_A 84 KRFKLNYATYSG 95 (99)
T ss_dssp EECCEEETTCCS
T ss_pred eeEEEeecCCCC
Confidence 9999987653
No 47
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=8.3e-22 Score=142.71 Aligned_cols=83 Identities=27% Similarity=0.465 Sum_probs=78.5
Q ss_pred CCCCeEEEeCCCCCCcHHHHHHHHccCCCeEEEEEeeCCCCCCcccEEEEEeecHHHHHHHHHHhCCceeCCeeeEEEec
Q 028130 47 NPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLITVEKA 126 (213)
Q Consensus 47 ~~~~~v~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~a 126 (213)
...++|||+|||..+++++|+++|.+||.|..|.|+.++.++.++|||||+|.+.++|++|| .||+..|+|+.|.|.++
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 101 (114)
T 2cq4_A 23 RDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQAS 101 (114)
T ss_dssp HHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEec
Confidence 45679999999999999999999999999999999999988999999999999999999999 89999999999999998
Q ss_pred ccCC
Q 028130 127 KRSR 130 (213)
Q Consensus 127 ~~~~ 130 (213)
+.+.
T Consensus 102 ~~~~ 105 (114)
T 2cq4_A 102 QAEK 105 (114)
T ss_dssp HHHH
T ss_pred CCCc
Confidence 7654
No 48
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.86 E-value=2.4e-22 Score=139.69 Aligned_cols=84 Identities=20% Similarity=0.308 Sum_probs=72.8
Q ss_pred CeEEEeCCCCCCcHHHHHHHHccCC--CeEEEEEeeCCCCCCcccEEEEEeecHHHHHHHHHHhCCceeCCeeeEEEecc
Q 028130 50 NNLYVTGLSTRVTNADLEKFFGGEG--KVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLITVEKAK 127 (213)
Q Consensus 50 ~~v~V~nLp~~~t~~~L~~~F~~~G--~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~a~ 127 (213)
.+|||+|||..+++++|+++|++|| .|..|.|+.++.+++++|||||+|.+.++|++||+.|||..|+|+.|.|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 5799999999999999999999999 99999999999999999999999999999999999999999999999999998
Q ss_pred cCCCCC
Q 028130 128 RSRGRT 133 (213)
Q Consensus 128 ~~~~~~ 133 (213)
+.....
T Consensus 82 ~~~~~~ 87 (90)
T 3p5t_L 82 KLEHHH 87 (90)
T ss_dssp ------
T ss_pred CCcccc
Confidence 775443
No 49
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.86 E-value=6.3e-21 Score=136.92 Aligned_cols=81 Identities=20% Similarity=0.289 Sum_probs=74.2
Q ss_pred CCCCCCCCeEEEeCCCCCCcHHHHHHHHccCCCeEEEEEeeCCCCCCcccEEEEEeecHHHHHHHHHHhCCceeCC----
Q 028130 43 PDAANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEG---- 118 (213)
Q Consensus 43 ~~~~~~~~~v~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g---- 118 (213)
+......++|||+|||..+++++|+++|.+||+|+.|.|+.+ |||||+|.+.++|++||+.||+..|+|
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~ 81 (108)
T 1x4c_A 9 PPSRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGE 81 (108)
T ss_dssp CCCCSCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSC
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCc
Confidence 334567889999999999999999999999999999999875 799999999999999999999999999
Q ss_pred -eeeEEEecccCC
Q 028130 119 -RLITVEKAKRSR 130 (213)
Q Consensus 119 -~~i~V~~a~~~~ 130 (213)
+.|.|++++++.
T Consensus 82 ~~~i~V~~a~~~~ 94 (108)
T 1x4c_A 82 TAYIRVKVDGPRS 94 (108)
T ss_dssp EEEEEEEESSCCS
T ss_pred ceEEEEEeCCCCC
Confidence 999999998743
No 50
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.86 E-value=2e-21 Score=138.96 Aligned_cols=85 Identities=25% Similarity=0.362 Sum_probs=79.1
Q ss_pred CCCCCCCCCeEEEeCCCCCCcHHHHHHHHccCCCeEEEEEeeCCCCCCcccEEEEEeecHHHHHHHHHHhCCceeCCeee
Q 028130 42 SPDAANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLI 121 (213)
Q Consensus 42 ~~~~~~~~~~v~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i 121 (213)
.+....+.++|||+|||..+++++|+++|.+||.|+.|.|+.+. +++++|||||+|.+.++|++||+.|||..|+|+.|
T Consensus 22 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 100 (107)
T 3ulh_A 22 GGAGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPM 100 (107)
T ss_dssp --CCCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEE
Confidence 34556778999999999999999999999999999999999998 99999999999999999999999999999999999
Q ss_pred EEEecc
Q 028130 122 TVEKAK 127 (213)
Q Consensus 122 ~V~~a~ 127 (213)
.|+++.
T Consensus 101 ~V~~a~ 106 (107)
T 3ulh_A 101 NIQLVT 106 (107)
T ss_dssp EEEEEC
T ss_pred EEEEeC
Confidence 999985
No 51
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.86 E-value=2e-21 Score=138.61 Aligned_cols=88 Identities=25% Similarity=0.416 Sum_probs=81.9
Q ss_pred CCCCCCCCeEEEeCCCCCCcHHHHHHHHccCCCeEEEEEeeCCCCCCcccEEEEEeecHHHHHHHHHHhCCceeCCeeeE
Q 028130 43 PDAANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLIT 122 (213)
Q Consensus 43 ~~~~~~~~~v~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~ 122 (213)
.....+.++|||+|||..+++++|+++|.+||+|..|.|+.++.++.++|||||+|.+.++|++||+. |+..|+|+.|.
T Consensus 10 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~ 88 (105)
T 2dh8_A 10 NSGADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNID 88 (105)
T ss_dssp CCCSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEB
T ss_pred cCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEE
Confidence 34457788999999999999999999999999999999999988999999999999999999999998 99999999999
Q ss_pred EEecccCCC
Q 028130 123 VEKAKRSRG 131 (213)
Q Consensus 123 V~~a~~~~~ 131 (213)
|.++.++..
T Consensus 89 V~~a~~~~~ 97 (105)
T 2dh8_A 89 PKPCTPRGM 97 (105)
T ss_dssp CCCSCCSSC
T ss_pred EEEccCCCC
Confidence 999987753
No 52
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.86 E-value=7.7e-21 Score=138.32 Aligned_cols=86 Identities=26% Similarity=0.329 Sum_probs=79.8
Q ss_pred CCCCCCCCCeEEEeCCCCCCcHHHHHHHHccCCCeEEEEEeeCCCCCCcccEEEEEeecHHHHHHHHHHhCCceeCCeee
Q 028130 42 SPDAANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLI 121 (213)
Q Consensus 42 ~~~~~~~~~~v~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i 121 (213)
......+.++|||+|||..+++++|+++|.+||+|..|.|+.++.+++++|||||+|.+.++|++||+.|||..|+|+.|
T Consensus 33 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 112 (118)
T 2khc_A 33 KQIEGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRL 112 (118)
T ss_dssp SSCCCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEEC
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence 34455677899999999999999999999999999999999998899999999999999999999999999999999999
Q ss_pred EEEecc
Q 028130 122 TVEKAK 127 (213)
Q Consensus 122 ~V~~a~ 127 (213)
+|++++
T Consensus 113 ~V~~ak 118 (118)
T 2khc_A 113 KVQLKK 118 (118)
T ss_dssp CEEEC-
T ss_pred EEEecC
Confidence 999974
No 53
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=2.3e-21 Score=136.34 Aligned_cols=85 Identities=24% Similarity=0.334 Sum_probs=77.9
Q ss_pred CCCCCCCeEEEeCCCCCCcHHHHH----HHHccCCCeEEEEEeeCCCCCCcccEEEEEeecHHHHHHHHHHhCCceeCCe
Q 028130 44 DAANPGNNLYVTGLSTRVTNADLE----KFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGR 119 (213)
Q Consensus 44 ~~~~~~~~v~V~nLp~~~t~~~L~----~~F~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~ 119 (213)
.+....++|||+|||..+++++|+ ++|++||.|..|.|+.++.+ +|||||+|.+.++|++||+.|||..|+|+
T Consensus 4 ~~~~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr 80 (96)
T 2dgx_A 4 GSSGNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSK 80 (96)
T ss_dssp CCCSSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCe
Confidence 445677899999999999999999 99999999999999988755 68999999999999999999999999999
Q ss_pred eeEEEecccCCC
Q 028130 120 LITVEKAKRSRG 131 (213)
Q Consensus 120 ~i~V~~a~~~~~ 131 (213)
.|.|+++++...
T Consensus 81 ~l~V~~a~~~~~ 92 (96)
T 2dgx_A 81 KILVSLATGASG 92 (96)
T ss_dssp EEEEEECCCSSC
T ss_pred EEEEEEcCCCCC
Confidence 999999987653
No 54
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.86 E-value=2.4e-21 Score=149.30 Aligned_cols=91 Identities=26% Similarity=0.326 Sum_probs=82.4
Q ss_pred CCCCCCCCCCCeEEEeCCCCCCcHHHHHHHHccCCCeEEEEEeeCCCCCCcccEEEEEeecHHHHHHHHHHhCCceeCCe
Q 028130 40 SRSPDAANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGR 119 (213)
Q Consensus 40 ~~~~~~~~~~~~v~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~ 119 (213)
...+....+.++|||+|||..+++++|+++|.+||.|..|.|+.++.++.++|||||+|.+.++|++||+.|||..|+|+
T Consensus 63 ~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~ 142 (165)
T 1rk8_A 63 EPGPQRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQ 142 (165)
T ss_dssp ---CCCCC-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCCCCCCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCE
Confidence 34455567788999999999999999999999999999999999988999999999999999999999999999999999
Q ss_pred eeEEEecccCC
Q 028130 120 LITVEKAKRSR 130 (213)
Q Consensus 120 ~i~V~~a~~~~ 130 (213)
.|.|.|+..+.
T Consensus 143 ~l~V~~a~~~~ 153 (165)
T 1rk8_A 143 TIQVDWCFVKG 153 (165)
T ss_dssp ECEEEESEECC
T ss_pred EEEEEEecCCC
Confidence 99999998765
No 55
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.86 E-value=2.6e-21 Score=139.16 Aligned_cols=88 Identities=26% Similarity=0.388 Sum_probs=82.0
Q ss_pred CCCCCCCCeEEEeCCCCCCcHHHHHHHHccCCCeEEEEEeeCCCCCCcccEEEEEeecHHHHHHHHHHhCCceeCCeeeE
Q 028130 43 PDAANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLIT 122 (213)
Q Consensus 43 ~~~~~~~~~v~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~ 122 (213)
+....+.++|||+|||..+++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|++||+.|||..|+|+.|.
T Consensus 20 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~ 99 (108)
T 2jrs_A 20 QKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMK 99 (108)
T ss_dssp CCSCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCE
T ss_pred ccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 34456778999999999999999999999999999999999988999999999999999999999999999999999999
Q ss_pred EEecccCC
Q 028130 123 VEKAKRSR 130 (213)
Q Consensus 123 V~~a~~~~ 130 (213)
|.+++++.
T Consensus 100 V~~a~~k~ 107 (108)
T 2jrs_A 100 VGHVTERT 107 (108)
T ss_dssp EECSCSSC
T ss_pred EEEcccCC
Confidence 99998764
No 56
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.86 E-value=2.6e-21 Score=140.56 Aligned_cols=82 Identities=29% Similarity=0.514 Sum_probs=75.1
Q ss_pred CCCeEEEeCCCCCCcHHHHHHHHccCCCeEEEEEeeCCCCCCcccEEEEEeecHHHHHHHHHHhCCceeCCeeeEEEecc
Q 028130 48 PGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLITVEKAK 127 (213)
Q Consensus 48 ~~~~v~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~a~ 127 (213)
..++|||+|||..+++++|+++|++||.|..|.|+.+. +.++|||||+|.+.++|++||+.|||..|+|+.|.|.++.
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~ 81 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 81 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESS
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECC
Confidence 35689999999999999999999999999999999875 4478999999999999999999999999999999999998
Q ss_pred cCCC
Q 028130 128 RSRG 131 (213)
Q Consensus 128 ~~~~ 131 (213)
.+..
T Consensus 82 ~~~~ 85 (115)
T 4f25_A 82 SRKE 85 (115)
T ss_dssp CCCC
T ss_pred Cccc
Confidence 7653
No 57
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.86 E-value=3.8e-21 Score=136.85 Aligned_cols=87 Identities=22% Similarity=0.290 Sum_probs=81.1
Q ss_pred CCCCCCCeEEEeCCCCCCcHHHHHHHHcc-CCCeEEEEEeeCCCCCCcccEEEEEeecHHHHHHHHHHhCCce-eCCeee
Q 028130 44 DAANPGNNLYVTGLSTRVTNADLEKFFGG-EGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSV-LEGRLI 121 (213)
Q Consensus 44 ~~~~~~~~v~V~nLp~~~t~~~L~~~F~~-~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~-i~g~~i 121 (213)
.+..+.++|||+|||..+++++|+++|.+ ||.|..|.|+.+. ++.++|||||+|.+.++|++||+.||+.. |+|+.|
T Consensus 4 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l 82 (104)
T 2dhg_A 4 GSSGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPV 82 (104)
T ss_dssp CCSSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCC
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeE
Confidence 34567889999999999999999999999 9999999999998 99999999999999999999999999999 999999
Q ss_pred EEEecccCCC
Q 028130 122 TVEKAKRSRG 131 (213)
Q Consensus 122 ~V~~a~~~~~ 131 (213)
.|.++..+..
T Consensus 83 ~v~~a~~~~~ 92 (104)
T 2dhg_A 83 RLSVAIPKAS 92 (104)
T ss_dssp CCCBCCCCCS
T ss_pred EEEEccCCCc
Confidence 9999976653
No 58
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.86 E-value=2.7e-21 Score=135.34 Aligned_cols=85 Identities=26% Similarity=0.380 Sum_probs=78.1
Q ss_pred CCCCCCCCeEEEeCCCCCCcHHHHHHHHccCCCeEEEEEeeCCCCCCcccEEEEEeecHHHHHHHHHHhCCceeCCeeeE
Q 028130 43 PDAANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLIT 122 (213)
Q Consensus 43 ~~~~~~~~~v~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~ 122 (213)
+....+.++|||+|||..+++++|+++|++||+|..|.|+.++. +.++|||||+|.+.++|++||+.||+..|+|+.|.
T Consensus 10 ~~~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 88 (95)
T 2ywk_A 10 PAQEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPIN 88 (95)
T ss_dssp --CTTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEE
Confidence 44556778999999999999999999999999999999999875 88999999999999999999999999999999999
Q ss_pred EEeccc
Q 028130 123 VEKAKR 128 (213)
Q Consensus 123 V~~a~~ 128 (213)
|++++.
T Consensus 89 V~~a~~ 94 (95)
T 2ywk_A 89 VSGPSS 94 (95)
T ss_dssp EECCCC
T ss_pred EEEcCC
Confidence 999864
No 59
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=7.7e-22 Score=145.14 Aligned_cols=85 Identities=16% Similarity=0.273 Sum_probs=77.1
Q ss_pred CCCCCCCeEEEeCCCCCCcHHHHHHHHccCCCeEEEEEeeCCCCCCcccEEEEEeecHHHHHHHHHHhCCceeCCeeeEE
Q 028130 44 DAANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLITV 123 (213)
Q Consensus 44 ~~~~~~~~v~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V 123 (213)
.+..+.++|||+|||+.+++++|+++|.+||.|..+.++.+..++.++|||||+|.+.++|++||+ ||+..|+|+.|.|
T Consensus 20 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V 98 (124)
T 1wel_A 20 SPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQV 98 (124)
T ss_dssp SCCCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEE
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEE
Confidence 345677899999999999999999999999999886666666799999999999999999999999 9999999999999
Q ss_pred EecccC
Q 028130 124 EKAKRS 129 (213)
Q Consensus 124 ~~a~~~ 129 (213)
.++..+
T Consensus 99 ~~a~~~ 104 (124)
T 1wel_A 99 HPITKK 104 (124)
T ss_dssp EEECHH
T ss_pred EECCHH
Confidence 998654
No 60
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.86 E-value=1.8e-21 Score=137.04 Aligned_cols=85 Identities=15% Similarity=0.155 Sum_probs=78.8
Q ss_pred CCCCCCeEEEeCCCCCCcHHHHHHHHccCCCeEEEEEeeCCCCCCcccEEEEEeecHHHHHHHHHHhCCceeCCeeeEEE
Q 028130 45 AANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLITVE 124 (213)
Q Consensus 45 ~~~~~~~v~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~ 124 (213)
.....++|||+|||..+++++|+++|.+||.|..+.++.+..+++++|||||+|.+.++|++||+.|||..|+|+.|.|+
T Consensus 11 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~ 90 (98)
T 2cqp_A 11 GKPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLV 90 (98)
T ss_dssp CCCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 34566899999999999999999999999999888888888899999999999999999999999999999999999999
Q ss_pred ecccC
Q 028130 125 KAKRS 129 (213)
Q Consensus 125 ~a~~~ 129 (213)
++...
T Consensus 91 ~a~~~ 95 (98)
T 2cqp_A 91 LGSGP 95 (98)
T ss_dssp ESSCS
T ss_pred EcCCC
Confidence 98754
No 61
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.86 E-value=4.2e-21 Score=133.56 Aligned_cols=85 Identities=24% Similarity=0.307 Sum_probs=78.9
Q ss_pred CCCCCCCeEEEeCCCCCCcHHHHHHHHccCCCeEEEEEeeCCCCCCcccEEEEEeecHHHHHHHHHHhCCceeCCeeeEE
Q 028130 44 DAANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLITV 123 (213)
Q Consensus 44 ~~~~~~~~v~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V 123 (213)
....+.++|||+|||..+++++|+++|.+||.|..|.|+.+ ++.++|||||+|.+.++|++||+.||+..|+|+.|.|
T Consensus 3 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v 80 (92)
T 2dgv_A 3 SGSSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDV 80 (92)
T ss_dssp CSSSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCC
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEE
Confidence 34567889999999999999999999999999999999874 7889999999999999999999999999999999999
Q ss_pred EecccCC
Q 028130 124 EKAKRSR 130 (213)
Q Consensus 124 ~~a~~~~ 130 (213)
.+++...
T Consensus 81 ~~a~~~~ 87 (92)
T 2dgv_A 81 RIDRNAS 87 (92)
T ss_dssp EECSCCS
T ss_pred EEcCCCC
Confidence 9998765
No 62
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.86 E-value=2.9e-21 Score=133.07 Aligned_cols=84 Identities=19% Similarity=0.330 Sum_probs=77.7
Q ss_pred CCCCeEEEeCCCCCCcHHHHHHHHccCCCeEEEEEeeCCCCCC-cccEEEEEeecHHHHHHHHHHhCCceeCCeeeEEEe
Q 028130 47 NPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRE-SCGFAFVTMETVEGADRCIKYLNRSVLEGRLITVEK 125 (213)
Q Consensus 47 ~~~~~v~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~t~~-~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~ 125 (213)
...++|||+|||..+++++|+++|++||.|..|.|+.+..++. ++|||||+|.+.++|++||+.|||..|+|+.|.|++
T Consensus 2 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 81 (88)
T 4a8x_A 2 MKPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATA 81 (88)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEE
Confidence 3568999999999999999999999999999999998877665 889999999999999999999999999999999999
Q ss_pred cccCC
Q 028130 126 AKRSR 130 (213)
Q Consensus 126 a~~~~ 130 (213)
+.+..
T Consensus 82 a~~~~ 86 (88)
T 4a8x_A 82 VLAPW 86 (88)
T ss_dssp ECCCC
T ss_pred CCCCC
Confidence 97654
No 63
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.85 E-value=1.1e-20 Score=134.39 Aligned_cols=83 Identities=27% Similarity=0.381 Sum_probs=74.9
Q ss_pred CCCCCCCCeEEEeCCCCCCcHHHHHHHHccCCCeEEEEEeeCCCCCCcccEEEEEeecHHHHHHHHHHhCCceeCCeeeE
Q 028130 43 PDAANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLIT 122 (213)
Q Consensus 43 ~~~~~~~~~v~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~ 122 (213)
+....+.++|||+|||..+++++|+++|.+||.|..|.|+. +||||+|.+.++|++||+.||+..|+|+.|.
T Consensus 5 ~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 76 (103)
T 2dgu_A 5 SSGMAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLK--------DYAFIHFDERDGAVKAMEEMNGKDLEGENIE 76 (103)
T ss_dssp CCCCCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEECS--------SCEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEC--------CEEEEEeCCHHHHHHHHHHHCCCccCCCEEE
Confidence 34456778999999999999999999999999999998873 5999999999999999999999999999999
Q ss_pred EEecccCCCCC
Q 028130 123 VEKAKRSRGRT 133 (213)
Q Consensus 123 V~~a~~~~~~~ 133 (213)
|.+++.+....
T Consensus 77 v~~a~~~~~~~ 87 (103)
T 2dgu_A 77 IVFAKPPDQKR 87 (103)
T ss_dssp EEECCCCCCCC
T ss_pred EEEcCCCcccc
Confidence 99998776443
No 64
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.85 E-value=6.6e-21 Score=131.28 Aligned_cols=83 Identities=28% Similarity=0.568 Sum_probs=76.6
Q ss_pred CCCCCCCCeEEEeCCCCCCcHHHHHHHHccCCCeEEEEEeeCCCCCCcccEEEEEeecHHHHHHHHHHhCCceeCCeeeE
Q 028130 43 PDAANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLIT 122 (213)
Q Consensus 43 ~~~~~~~~~v~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~ 122 (213)
+....+.++|||+|||..+++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|++||+ +++..|+|+.|.
T Consensus 5 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~ 83 (87)
T 3s7r_A 5 SKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVID 83 (87)
T ss_dssp --CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEE
Confidence 3455778899999999999999999999999999999999999899999999999999999999997 688999999999
Q ss_pred EEec
Q 028130 123 VEKA 126 (213)
Q Consensus 123 V~~a 126 (213)
|++|
T Consensus 84 v~~A 87 (87)
T 3s7r_A 84 PKKA 87 (87)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 9875
No 65
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.85 E-value=8.9e-22 Score=139.61 Aligned_cols=83 Identities=23% Similarity=0.324 Sum_probs=78.8
Q ss_pred CCCCeEEEeCCCC------CCcHHHHHHHHccCCCeEEEEEeeCCCCCCcccEEEEEeecHHHHHHHHHHhCCceeCC-e
Q 028130 47 NPGNNLYVTGLST------RVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEG-R 119 (213)
Q Consensus 47 ~~~~~v~V~nLp~------~~t~~~L~~~F~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g-~ 119 (213)
...++|||+|||. .+++++|+++|++||.|..|.|+.++.|++++|||||+|.+.++|++||+.|||..|.| +
T Consensus 4 ~~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r 83 (100)
T 3ns6_A 4 GSDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKH 83 (100)
T ss_dssp CGGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSC
T ss_pred CcCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCe
Confidence 4467999999999 99999999999999999999999999999999999999999999999999999999999 9
Q ss_pred eeEEEecccC
Q 028130 120 LITVEKAKRS 129 (213)
Q Consensus 120 ~i~V~~a~~~ 129 (213)
.|.|.++.+.
T Consensus 84 ~l~V~~a~~~ 93 (100)
T 3ns6_A 84 RLFLYTMKDV 93 (100)
T ss_dssp BCEEEESHHH
T ss_pred EEEEEECchh
Confidence 9999998754
No 66
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=2.2e-20 Score=132.74 Aligned_cols=88 Identities=25% Similarity=0.414 Sum_probs=80.7
Q ss_pred CCCCCCCCCeEEEeCCCCCCcHHHHHHHHccCCCeEEEEEeeCCCCCCcccEEEEEeecHHHHHHHHHHhCCceeCCeee
Q 028130 42 SPDAANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLI 121 (213)
Q Consensus 42 ~~~~~~~~~~v~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i 121 (213)
.+....+.++|||+|||..+++++|+++|.+||.|..|.|+.++.++.++|||||+|.+.++|++||. ++..|+|+.|
T Consensus 8 ~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l 85 (103)
T 2cqg_A 8 VKRAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWC 85 (103)
T ss_dssp CSCCCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEE
T ss_pred CCCccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEE
Confidence 34556778899999999999999999999999999999999998899999999999999999999999 4779999999
Q ss_pred EEEecccCCC
Q 028130 122 TVEKAKRSRG 131 (213)
Q Consensus 122 ~V~~a~~~~~ 131 (213)
.|.++..+..
T Consensus 86 ~v~~a~~~~~ 95 (103)
T 2cqg_A 86 DCKLPNSKQS 95 (103)
T ss_dssp EEECCCTTCC
T ss_pred EEEecCCCCc
Confidence 9999987653
No 67
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=5.8e-21 Score=138.63 Aligned_cols=88 Identities=25% Similarity=0.507 Sum_probs=81.0
Q ss_pred CCCCCCCCeEEEeCCCCCCcHHHHHHHHccCCCeEEEEEeeCCCCCCcccEEEEEeecHHHHHHHHHHhCCceeCCeeeE
Q 028130 43 PDAANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLIT 122 (213)
Q Consensus 43 ~~~~~~~~~v~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~ 122 (213)
+....+.++|||+|||..+++++|+++|.+||.|..|.|+.++.++.++|||||+|.+.++|++||+. ++..|+|+.|.
T Consensus 21 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~ 99 (116)
T 1x4b_A 21 KREKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVE 99 (116)
T ss_dssp CCHHHHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEE
T ss_pred ccccCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEE
Confidence 33345568999999999999999999999999999999999988999999999999999999999996 99999999999
Q ss_pred EEecccCCC
Q 028130 123 VEKAKRSRG 131 (213)
Q Consensus 123 V~~a~~~~~ 131 (213)
|.++..+..
T Consensus 100 V~~a~~~~~ 108 (116)
T 1x4b_A 100 PKRAVAREE 108 (116)
T ss_dssp EECCSSCCC
T ss_pred EEECCCCcc
Confidence 999987754
No 68
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=1.1e-21 Score=139.65 Aligned_cols=88 Identities=24% Similarity=0.404 Sum_probs=82.0
Q ss_pred CCCCCCCCeEEEeCCCCCCcHHHHHHHHccCCCeEEEEEeeCCCCCCcccEEEEEeecHHHHHHHHHHhCCceeCCeeeE
Q 028130 43 PDAANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLIT 122 (213)
Q Consensus 43 ~~~~~~~~~v~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~ 122 (213)
+....+.++|||+|||..+++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|++||+.|||..|+|+.|.
T Consensus 2 p~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 81 (104)
T 1p1t_A 2 PAVDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALR 81 (104)
T ss_dssp CCSHHHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBE
T ss_pred CCcCCCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEE
Confidence 34455678999999999999999999999999999999999988999999999999999999999999999999999999
Q ss_pred EEecccCC
Q 028130 123 VEKAKRSR 130 (213)
Q Consensus 123 V~~a~~~~ 130 (213)
|.++....
T Consensus 82 v~~a~~~~ 89 (104)
T 1p1t_A 82 VDNAASEK 89 (104)
T ss_dssp EEETTCTT
T ss_pred EEeCCCcc
Confidence 99998764
No 69
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.85 E-value=1.6e-21 Score=136.42 Aligned_cols=83 Identities=16% Similarity=0.173 Sum_probs=75.8
Q ss_pred CCCCCeEEEeCCCCCCcHHHHHHHHccCCCeEEEEEeeCCCCCCcccEEEEEeecHHHHHHHHHHhCCceeCCeeeEEEe
Q 028130 46 ANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLITVEK 125 (213)
Q Consensus 46 ~~~~~~v~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~ 125 (213)
.++.++|||+|||..+++++|+++|.+||.|..+.++.+..++.++|||||+|.+.++|++||+.||+..|+|+.|.|++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~ 91 (95)
T 2ek1_A 12 KPGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSG 91 (95)
T ss_dssp ---CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEe
Confidence 34568999999999999999999999999999888888888999999999999999999999999999999999999999
Q ss_pred ccc
Q 028130 126 AKR 128 (213)
Q Consensus 126 a~~ 128 (213)
+..
T Consensus 92 a~s 94 (95)
T 2ek1_A 92 PSS 94 (95)
T ss_dssp CC-
T ss_pred ccC
Confidence 753
No 70
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.85 E-value=1.6e-20 Score=132.96 Aligned_cols=85 Identities=21% Similarity=0.352 Sum_probs=75.9
Q ss_pred CCCCCCCCCeEEEeCCCCCCcHHHHHHHHccCCCeEEEEEeeCCCCCCcccEEEEEeecHHHHHHHHHHhCCceeCCeee
Q 028130 42 SPDAANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLI 121 (213)
Q Consensus 42 ~~~~~~~~~~v~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i 121 (213)
.+....+.++|||+|||..+++++|+++|.+||.| .|+.+ .+++++|||||+|.+.++|++||+.||+..|+|+.|
T Consensus 8 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 83 (101)
T 2fc9_A 8 NSTWSGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAI 83 (101)
T ss_dssp CCCCSCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEE
T ss_pred CccCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEE
Confidence 34455678999999999999999999999999987 45555 578899999999999999999999999999999999
Q ss_pred EEEecccCC
Q 028130 122 TVEKAKRSR 130 (213)
Q Consensus 122 ~V~~a~~~~ 130 (213)
.|++++.+.
T Consensus 84 ~v~~a~~~~ 92 (101)
T 2fc9_A 84 RLELQGPRG 92 (101)
T ss_dssp EEEECSSCC
T ss_pred EEEEcCCCC
Confidence 999998765
No 71
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.85 E-value=1.6e-20 Score=137.97 Aligned_cols=90 Identities=22% Similarity=0.315 Sum_probs=83.0
Q ss_pred CCCCCCCeEEEeCCCCCCcHHHHHHHHccCCCeEEEEEeeCCCCCCcccEEEEEeecHHHHHHHHHHhCCceeCCeeeEE
Q 028130 44 DAANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLITV 123 (213)
Q Consensus 44 ~~~~~~~~v~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V 123 (213)
....++++|||+|||..+++++|+++|.+||.|..|.|+.+. ++.++|||||+|.+.++|++||+.|||..|+|+.|.|
T Consensus 30 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 108 (124)
T 2kt5_A 30 EGVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDI 108 (124)
T ss_dssp CCCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEE
Confidence 355778899999999999999999999999999999999988 8999999999999999999999999999999999999
Q ss_pred EecccCCCCCC
Q 028130 124 EKAKRSRGRTP 134 (213)
Q Consensus 124 ~~a~~~~~~~~ 134 (213)
++|.......+
T Consensus 109 ~~a~~~~~~~~ 119 (124)
T 2kt5_A 109 QLVASQIDLEH 119 (124)
T ss_dssp EEECCTTCCCC
T ss_pred EEeCCCCCCCC
Confidence 99987764443
No 72
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.85 E-value=4.2e-21 Score=142.57 Aligned_cols=90 Identities=22% Similarity=0.392 Sum_probs=82.3
Q ss_pred CCCCCCCCCCeEEEeCCCCCCcHHHHHHHHccCCCeEE--EEEeeCCCCCCcccEEEEEeecHHHHHHHHHHhCCc----
Q 028130 41 RSPDAANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTE--CHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRS---- 114 (213)
Q Consensus 41 ~~~~~~~~~~~v~V~nLp~~~t~~~L~~~F~~~G~i~~--~~i~~~~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~---- 114 (213)
..+....+.++|||+|||+.+++++|+++|.+||.|.. |.|+.++.+++++|||||+|.+. +|++||..|||.
T Consensus 15 ~~~~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~ 93 (131)
T 2m2b_A 15 SEPSSENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPL 93 (131)
T ss_dssp CCCCCSCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSC
T ss_pred CCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCc
Confidence 34455577889999999999999999999999999966 99999999999999999999999 999999999999
Q ss_pred eeCCeeeEEEecccCCC
Q 028130 115 VLEGRLITVEKAKRSRG 131 (213)
Q Consensus 115 ~i~g~~i~V~~a~~~~~ 131 (213)
.|+|+.|.|+++++...
T Consensus 94 ~~~gr~l~V~~a~~~~~ 110 (131)
T 2m2b_A 94 TIDGKTINVEFAKGSKR 110 (131)
T ss_dssp CGGGCCCCCEECCCSCC
T ss_pred cCCCEEEEEEECCCCCC
Confidence 99999999999987643
No 73
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.84 E-value=1e-20 Score=136.53 Aligned_cols=87 Identities=24% Similarity=0.368 Sum_probs=78.8
Q ss_pred CCCCCCCeEEEeCCCCCCcHHHHH---HHHccCCCeEEEEEeeCCCCC---CcccEEEEEeecHHHHHHHHHHhCCceeC
Q 028130 44 DAANPGNNLYVTGLSTRVTNADLE---KFFGGEGKVTECHLVTDPRTR---ESCGFAFVTMETVEGADRCIKYLNRSVLE 117 (213)
Q Consensus 44 ~~~~~~~~v~V~nLp~~~t~~~L~---~~F~~~G~i~~~~i~~~~~t~---~~~g~afV~f~~~~~a~~Ai~~l~g~~i~ 117 (213)
....+.++|||+|||+.+++++|+ ++|.+||+|..|.|+.+..++ .++|||||+|.+.++|++||+.|||..|+
T Consensus 10 ~r~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~ 89 (111)
T 2cpi_A 10 VRVVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVD 89 (111)
T ss_dssp CCCCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEET
T ss_pred ccccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEEC
Confidence 344567899999999999999999 999999999999999887654 45699999999999999999999999999
Q ss_pred CeeeEEEecccCC
Q 028130 118 GRLITVEKAKRSR 130 (213)
Q Consensus 118 g~~i~V~~a~~~~ 130 (213)
|+.|.|+++.++.
T Consensus 90 gr~l~V~~a~~k~ 102 (111)
T 2cpi_A 90 GRTLKASLGTTKY 102 (111)
T ss_dssp TEEEEEESCCCCS
T ss_pred CEEEEEEeccccc
Confidence 9999999998775
No 74
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.84 E-value=1.1e-20 Score=130.62 Aligned_cols=81 Identities=25% Similarity=0.444 Sum_probs=77.1
Q ss_pred CCCeEEEeCCCCCCcHHHHHHHHccCCCeEEEEEeeCCCCCCcccEEEEEeecHHHHHHHHHHhCCceeCCeeeEEEecc
Q 028130 48 PGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLITVEKAK 127 (213)
Q Consensus 48 ~~~~v~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~a~ 127 (213)
..++|||+|||..+++++|+++|++||.|..|.|+.+..++.++|||||+|.+.++|++|| .|||..|+|+.|.|++++
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~ 83 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKR 83 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETT
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEcc
Confidence 3579999999999999999999999999999999999889999999999999999999999 899999999999999987
Q ss_pred cC
Q 028130 128 RS 129 (213)
Q Consensus 128 ~~ 129 (213)
+.
T Consensus 84 ~~ 85 (89)
T 3ucg_A 84 TN 85 (89)
T ss_dssp TT
T ss_pred CC
Confidence 64
No 75
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.84 E-value=7.2e-21 Score=145.61 Aligned_cols=83 Identities=24% Similarity=0.347 Sum_probs=77.4
Q ss_pred CCCCeEEEeCCCCCCcHHHHHHHHccCC--CeEEEEEeeCCCCCCcccEEEEEeecHHHHHHHHHHhCCceeCCeeeEEE
Q 028130 47 NPGNNLYVTGLSTRVTNADLEKFFGGEG--KVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLITVE 124 (213)
Q Consensus 47 ~~~~~v~V~nLp~~~t~~~L~~~F~~~G--~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~ 124 (213)
+..++|||+|||+.+++++|+++|.+|| .|..|.|+.++.++.++|||||+|.+.++|++||+.|||..|+|+.|.|.
T Consensus 53 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~ 132 (156)
T 3n9u_C 53 NRRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVR 132 (156)
T ss_dssp ---CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEE
Confidence 4568999999999999999999999999 99999999999999999999999999999999999999999999999999
Q ss_pred ecccC
Q 028130 125 KAKRS 129 (213)
Q Consensus 125 ~a~~~ 129 (213)
++..+
T Consensus 133 ~a~~~ 137 (156)
T 3n9u_C 133 PATRQ 137 (156)
T ss_dssp ECCHH
T ss_pred EcCCC
Confidence 98653
No 76
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.84 E-value=2.5e-20 Score=129.29 Aligned_cols=80 Identities=26% Similarity=0.459 Sum_probs=73.7
Q ss_pred CCCCCCeEEEeCCCCCCcHHHHHHHHccCCCeEEEEEeeCCCCCCcccEEEEEeecHHHHHHHHHHhCCceeCCeeeEEE
Q 028130 45 AANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLITVE 124 (213)
Q Consensus 45 ~~~~~~~v~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~ 124 (213)
...+.++|||+|||..+++++|+++|++||.|..|.|+ ++||||+|.+.++|++||+.||+..|+|+.|.|+
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 75 (90)
T 2dnq_A 4 GSSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVE 75 (90)
T ss_dssp CSSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEE
Confidence 34677899999999999999999999999999999987 3799999999999999999999999999999999
Q ss_pred ecccCCCC
Q 028130 125 KAKRSRGR 132 (213)
Q Consensus 125 ~a~~~~~~ 132 (213)
+++.+...
T Consensus 76 ~a~~~~~~ 83 (90)
T 2dnq_A 76 ASKNKSKA 83 (90)
T ss_dssp CSSCCCCC
T ss_pred ECCCCCCC
Confidence 99877643
No 77
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=5.3e-20 Score=133.05 Aligned_cols=86 Identities=21% Similarity=0.344 Sum_probs=79.0
Q ss_pred CCCCCCCCeEEEeCCCCCCcHHHHHHHHccCCCeEEEEEeeCCCCCCcccEEEEEeecHHHHHHHHHHhCCcee------
Q 028130 43 PDAANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVL------ 116 (213)
Q Consensus 43 ~~~~~~~~~v~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i------ 116 (213)
.....+.++|||+|||..+++++|+++|.+||.|..|.|+.+. ++.++|||||+|.+.++|++||+.|||..|
T Consensus 19 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~ 97 (114)
T 1x5o_A 19 KQQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGV 97 (114)
T ss_dssp SCCCCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTS
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccc
Confidence 3445677899999999999999999999999999999999998 899999999999999999999999999999
Q ss_pred --CCeeeEEEecccC
Q 028130 117 --EGRLITVEKAKRS 129 (213)
Q Consensus 117 --~g~~i~V~~a~~~ 129 (213)
.+++|.|.|+.+.
T Consensus 98 ~~~~~~l~v~~a~p~ 112 (114)
T 1x5o_A 98 SAPTEPLLCKFSGPS 112 (114)
T ss_dssp CCCSSCBEEEECCCS
T ss_pred cCCCCceeEEccCCC
Confidence 5788999998754
No 78
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.84 E-value=3e-20 Score=129.05 Aligned_cols=83 Identities=22% Similarity=0.365 Sum_probs=77.8
Q ss_pred CCCCCCeEEEeCCCCCCcHHHHHHHHccCCCeEEEEEeeCCCCCCcccEEEEEeecHHHHHHHHHHhCCceeCCeeeEEE
Q 028130 45 AANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLITVE 124 (213)
Q Consensus 45 ~~~~~~~v~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~ 124 (213)
.....++|||+|||..+++++|+++|.+| .|..|.|+.+ .+++++|||||+|.+.++|++||+ ||+..|+|+.|.|.
T Consensus 6 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~ 82 (91)
T 2dgw_A 6 SGTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVF 82 (91)
T ss_dssp CCCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEE
T ss_pred CCCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEE
Confidence 44667899999999999999999999999 9999999998 689999999999999999999999 99999999999999
Q ss_pred ecccCC
Q 028130 125 KAKRSR 130 (213)
Q Consensus 125 ~a~~~~ 130 (213)
++..++
T Consensus 83 ~a~~~~ 88 (91)
T 2dgw_A 83 REKSGP 88 (91)
T ss_dssp EESSCC
T ss_pred ECCcCC
Confidence 998764
No 79
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=1.2e-20 Score=135.70 Aligned_cols=90 Identities=31% Similarity=0.505 Sum_probs=79.2
Q ss_pred CCCCCCCCCCCCCeEEEeCCCCCCcHHHHHHHHccCCCeEEEEEeeCCCCCCcccEEEEEeecHHHHHHHHHHhCCceeC
Q 028130 38 SRSRSPDAANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLE 117 (213)
Q Consensus 38 ~~~~~~~~~~~~~~v~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~ 117 (213)
..+.......+.++|||+|||..+++++|+++|++||.|..|.|+.+. +.++|||||+|.+.++|++||+.|||..|+
T Consensus 18 ~~S~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~ 95 (109)
T 2err_A 18 GSHMNTENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVE 95 (109)
T ss_dssp ----CCSCTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEET
T ss_pred CCCCCccCCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 334455666788999999999999999999999999999999998874 347899999999999999999999999999
Q ss_pred CeeeEEEecccC
Q 028130 118 GRLITVEKAKRS 129 (213)
Q Consensus 118 g~~i~V~~a~~~ 129 (213)
|+.|.|++++.+
T Consensus 96 g~~l~V~~a~~~ 107 (109)
T 2err_A 96 GRKIEVNNATAR 107 (109)
T ss_dssp TEECEEEECCCS
T ss_pred CEEEEEEECCCC
Confidence 999999999765
No 80
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=5e-20 Score=130.97 Aligned_cols=84 Identities=20% Similarity=0.211 Sum_probs=74.4
Q ss_pred CCCCCCCCeEEEeCCCCCCcHHHHHHHHccCCCeEEEEEeeCCCCCCcccEEEEEeecHHHHHHHHHHh--CCceeCCee
Q 028130 43 PDAANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYL--NRSVLEGRL 120 (213)
Q Consensus 43 ~~~~~~~~~v~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~Ai~~l--~g~~i~g~~ 120 (213)
....++.++|||+|||+.+++++|+++|++||.|..|.|+.+ +|||||+|++.++|++||+.| ++..|.|++
T Consensus 9 ~~~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~ 82 (101)
T 2cq1_A 9 KMDGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRNQP 82 (101)
T ss_dssp CCCSSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETTEE
T ss_pred CccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCcE
Confidence 445567889999999999999999999999999999988764 489999999999999999977 467899999
Q ss_pred eEEEecccCCCC
Q 028130 121 ITVEKAKRSRGR 132 (213)
Q Consensus 121 i~V~~a~~~~~~ 132 (213)
|.|++++.+...
T Consensus 83 l~V~~a~~~~~~ 94 (101)
T 2cq1_A 83 IYIQYSNHKELK 94 (101)
T ss_dssp CEEEECSCSSCC
T ss_pred EEEEEcCcccCc
Confidence 999999876543
No 81
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=2.1e-21 Score=133.26 Aligned_cols=82 Identities=22% Similarity=0.406 Sum_probs=76.8
Q ss_pred CCCCCeEEEeCCCCCCcHHHHHHHHccCCCeEEEEEeeCCCCCCcccEEEEEeecHHHHHHHHHHhCCceeCCeeeEEEe
Q 028130 46 ANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLITVEK 125 (213)
Q Consensus 46 ~~~~~~v~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~ 125 (213)
..+.++|||+|||..+++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|++||+.|||..|+|+.|+|.+
T Consensus 2 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~ 81 (85)
T 1x4e_A 2 SSGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSG 81 (85)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecC
Confidence 35778999999999999999999999999999999999988999999999999999999999999999999999998776
Q ss_pred cc
Q 028130 126 AK 127 (213)
Q Consensus 126 a~ 127 (213)
+.
T Consensus 82 ~~ 83 (85)
T 1x4e_A 82 PS 83 (85)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 82
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.84 E-value=3.8e-20 Score=131.17 Aligned_cols=83 Identities=30% Similarity=0.488 Sum_probs=75.6
Q ss_pred CCCCCCeEEEeCCCCCCcHHHHHHHHccCCCeEEEEEeeCCCCCCcccEEEEEeecHHHHHHHHHHhCCceeCCeeeEEE
Q 028130 45 AANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLITVE 124 (213)
Q Consensus 45 ~~~~~~~v~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~ 124 (213)
...+.++|||+|||..+++++|+++|.+|+ .|.++.++.++.++|||||+|.+.++|++||+.||+..|+|+.|.|+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 87 (102)
T 2fc8_A 11 RSQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLD 87 (102)
T ss_dssp SSCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 346778999999999999999999999874 56777787789999999999999999999999999999999999999
Q ss_pred ecccCC
Q 028130 125 KAKRSR 130 (213)
Q Consensus 125 ~a~~~~ 130 (213)
+++++.
T Consensus 88 ~a~~~~ 93 (102)
T 2fc8_A 88 WAKPKG 93 (102)
T ss_dssp ECCCCC
T ss_pred EecCCC
Confidence 998765
No 83
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.84 E-value=1.2e-20 Score=134.28 Aligned_cols=79 Identities=14% Similarity=0.265 Sum_probs=71.8
Q ss_pred CCCCCeEEEeCCCC-CCcHHHHHHHHccCCCeEEEEEeeCCCCCCcccEEEEEeecHHHHHHHHHHhCCc--eeCCeeeE
Q 028130 46 ANPGNNLYVTGLST-RVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRS--VLEGRLIT 122 (213)
Q Consensus 46 ~~~~~~v~V~nLp~-~~t~~~L~~~F~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~--~i~g~~i~ 122 (213)
..+.++|||+|||+ .+++++|+++|++||.|..|.|+.++ |||||+|++.++|++||+.||+. .|.|+.|.
T Consensus 12 ~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~k------g~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~ 85 (102)
T 1x4d_A 12 VETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNKI------NEAFIEMATTEDAQAAVDYYTTTPALVFGKPVR 85 (102)
T ss_dssp CCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSSS------SCEEEEESSHHHHHHHHHHHHHSCCEETTEECE
T ss_pred CCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcCC------CEEEEEECCHHHHHHHHHHHcCCCceECCcEEE
Confidence 45788999999999 99999999999999999999998654 79999999999999999999864 59999999
Q ss_pred EEecccCC
Q 028130 123 VEKAKRSR 130 (213)
Q Consensus 123 V~~a~~~~ 130 (213)
|++++...
T Consensus 86 V~~a~~~~ 93 (102)
T 1x4d_A 86 VHLSQKYK 93 (102)
T ss_dssp EEEECCCT
T ss_pred EEECCCCC
Confidence 99998654
No 84
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.84 E-value=3.9e-20 Score=128.84 Aligned_cols=82 Identities=28% Similarity=0.437 Sum_probs=74.6
Q ss_pred CCCCCCCCeEEEeCCCCCCcHHHHHHHHccCCCeEEEEEeeCCCCCCcccEEEEEeecHHHHHHHHHHhCCceeCCeeeE
Q 028130 43 PDAANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLIT 122 (213)
Q Consensus 43 ~~~~~~~~~v~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~ 122 (213)
+....+.++|||+|||..+++++|+++|++||.|..|.|+. +||||+|.+.++|++||+.||+..|+|+.|.
T Consensus 4 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 75 (92)
T 2dgt_A 4 GSSGKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVK--------DYAFVHMERAEDAVEAIRGLDNTEFQGKRMH 75 (92)
T ss_dssp SCCCCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECS--------SEEEEEESCHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCeeCCcEEE
Confidence 34456788999999999999999999999999999999874 4999999999999999999999999999999
Q ss_pred EEecccCCCC
Q 028130 123 VEKAKRSRGR 132 (213)
Q Consensus 123 V~~a~~~~~~ 132 (213)
|++++.+...
T Consensus 76 V~~a~~~~~~ 85 (92)
T 2dgt_A 76 VQLSTSRLRT 85 (92)
T ss_dssp EEESSCCCSC
T ss_pred EEEccCCCCC
Confidence 9999877543
No 85
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.84 E-value=1.7e-20 Score=135.10 Aligned_cols=87 Identities=32% Similarity=0.566 Sum_probs=76.1
Q ss_pred CCCCCCCCeEEEeCCCCCCcHHHHHHHHccCCCeEEEEEeeCCCCCCcccEEEEEeecHHHHHHHHHHhCCceeCCeeeE
Q 028130 43 PDAANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLIT 122 (213)
Q Consensus 43 ~~~~~~~~~v~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~ 122 (213)
.+...+.++|||+|||..+++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|++||+.+ +..|+|+.|.
T Consensus 19 ~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~ 97 (109)
T 2rs2_A 19 SHMGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTID 97 (109)
T ss_dssp -------CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEE
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEE
Confidence 445567889999999999999999999999999999999999889999999999999999999999966 5999999999
Q ss_pred EEecccCC
Q 028130 123 VEKAKRSR 130 (213)
Q Consensus 123 V~~a~~~~ 130 (213)
|.++..+.
T Consensus 98 V~~a~~~~ 105 (109)
T 2rs2_A 98 PKVAFPRR 105 (109)
T ss_dssp EEECCCCC
T ss_pred EEEccCCC
Confidence 99998765
No 86
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.84 E-value=5.6e-21 Score=142.77 Aligned_cols=88 Identities=30% Similarity=0.467 Sum_probs=82.5
Q ss_pred CCCCCCCCeEEEeCCCCCCcHHHHHHHHccCCCeEEEEEeeCCCCCCcccEEEEEeecHHHHHHHHHHhCCceeCCeeeE
Q 028130 43 PDAANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLIT 122 (213)
Q Consensus 43 ~~~~~~~~~v~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~ 122 (213)
+....+.++|||+|||..+++++|+++|++||.|..|.|+.++.+++++|||||+|.+.++|++||+.|||..|+|+.|.
T Consensus 41 ~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~ 120 (135)
T 2lea_A 41 PPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELR 120 (135)
T ss_dssp CSSGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 44556788999999999999999999999999999999999988999999999999999999999999999999999999
Q ss_pred EEecccCC
Q 028130 123 VEKAKRSR 130 (213)
Q Consensus 123 V~~a~~~~ 130 (213)
|++++...
T Consensus 121 V~~a~~~~ 128 (135)
T 2lea_A 121 VQMARYGR 128 (135)
T ss_dssp EEECCCCC
T ss_pred EEECCCCC
Confidence 99998765
No 87
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=4.5e-21 Score=138.86 Aligned_cols=92 Identities=26% Similarity=0.329 Sum_probs=77.0
Q ss_pred CCCCCCCCeEEEeCCCCCCcHHHHHHHHccCCCeEEEEEeeCCCCCCcccEEEEEeecHHHHHHHHHHhCCceeCCeeeE
Q 028130 43 PDAANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLIT 122 (213)
Q Consensus 43 ~~~~~~~~~v~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~ 122 (213)
.....+.++|||+|||..+++++|+++|.+||.|..|.+..+..+++++|||||+|.+.++|++||+.|||..|+|+.|.
T Consensus 19 ~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~ 98 (115)
T 2cpx_A 19 YNPGEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILV 98 (115)
T ss_dssp CCCCSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCE
T ss_pred cCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEE
Confidence 34456789999999999999999999999999984332222222788889999999999999999999999999999999
Q ss_pred EEecccCCCCCC
Q 028130 123 VEKAKRSRGRTP 134 (213)
Q Consensus 123 V~~a~~~~~~~~ 134 (213)
|++++.+....+
T Consensus 99 v~~a~~~~~~~~ 110 (115)
T 2cpx_A 99 IEFGKNKKQRSS 110 (115)
T ss_dssp EEECCCCSCCCC
T ss_pred EEEccCCCCCCC
Confidence 999988764443
No 88
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.84 E-value=2.5e-20 Score=139.19 Aligned_cols=84 Identities=36% Similarity=0.440 Sum_probs=78.6
Q ss_pred CCCCCCCCeEEEeCCCCCCcHHHHHHHHccCCCeEEEEEeeCCCCCCcccEEEEEeecHHHHHHHHHHhCCceeCCeeeE
Q 028130 43 PDAANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLIT 122 (213)
Q Consensus 43 ~~~~~~~~~v~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~ 122 (213)
.....+.++|||+|||..+++++|+++|.+||+|..|.|+.++.++.++|||||+|.+.++|++||+.|||..|+|+.|.
T Consensus 57 ~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 136 (140)
T 2ku7_A 57 GGSATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIR 136 (140)
T ss_dssp CSSCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEE
T ss_pred CCCCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 34556789999999999999999999999999999999999988999999999999999999999999999999999999
Q ss_pred EEec
Q 028130 123 VEKA 126 (213)
Q Consensus 123 V~~a 126 (213)
|++|
T Consensus 137 v~~A 140 (140)
T 2ku7_A 137 VNLA 140 (140)
T ss_dssp EEC-
T ss_pred EEeC
Confidence 9986
No 89
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=1.9e-20 Score=134.25 Aligned_cols=86 Identities=20% Similarity=0.239 Sum_probs=79.1
Q ss_pred CCCCeEEEeCCCCCCcHHHHHHHHccCCC-eEEEEEe-eCCCCCCcccEEEEEeecHHHHHHHHHHhC--CceeCCeeeE
Q 028130 47 NPGNNLYVTGLSTRVTNADLEKFFGGEGK-VTECHLV-TDPRTRESCGFAFVTMETVEGADRCIKYLN--RSVLEGRLIT 122 (213)
Q Consensus 47 ~~~~~v~V~nLp~~~t~~~L~~~F~~~G~-i~~~~i~-~~~~t~~~~g~afV~f~~~~~a~~Ai~~l~--g~~i~g~~i~ 122 (213)
.+.++|||+|||..+++++|+++|.+||. |..|.|+ .+..++.++|||||+|.+.++|++||+.|| +..|+|+.|.
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~ 85 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIA 85 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCE
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEE
Confidence 45789999999999999999999999998 9999998 788888999999999999999999999996 5899999999
Q ss_pred EEecccCCCC
Q 028130 123 VEKAKRSRGR 132 (213)
Q Consensus 123 V~~a~~~~~~ 132 (213)
|.++.++...
T Consensus 86 V~~a~~~~~~ 95 (109)
T 2dis_A 86 VDWAEPEIDV 95 (109)
T ss_dssp EEESCSSCST
T ss_pred EEEcCCCCCc
Confidence 9999877643
No 90
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=1.2e-20 Score=134.78 Aligned_cols=82 Identities=23% Similarity=0.305 Sum_probs=73.5
Q ss_pred CCCCCCCeEEEeCCCCCCcHHHHHHHHccCCCeEEEEEeeCCCCCCcccEEEEEeecHHHHHHHHHHhCC--ceeCCeee
Q 028130 44 DAANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNR--SVLEGRLI 121 (213)
Q Consensus 44 ~~~~~~~~v~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~Ai~~l~g--~~i~g~~i 121 (213)
....+.++|||+|||+.+++++|+++|++||+|..|.|+.+ +|||||+|++.++|++||+.|++ ..|.|++|
T Consensus 11 ~~~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l 84 (105)
T 1sjq_A 11 GSGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPI 84 (105)
T ss_dssp -CCCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEEC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEE
Confidence 34567889999999999999999999999999999999865 48999999999999999998864 78999999
Q ss_pred EEEecccCCC
Q 028130 122 TVEKAKRSRG 131 (213)
Q Consensus 122 ~V~~a~~~~~ 131 (213)
.|++++.+..
T Consensus 85 ~V~~A~~~~~ 94 (105)
T 1sjq_A 85 YIQFSNHKEL 94 (105)
T ss_dssp CBCCCSSSSC
T ss_pred EEEEcCCCCC
Confidence 9999987653
No 91
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.84 E-value=4.1e-20 Score=132.10 Aligned_cols=84 Identities=18% Similarity=0.245 Sum_probs=74.1
Q ss_pred CCCCCCCCeEEEeCCCCCCcHHHHHHHHccCCCeEEEEEeeCCCCCCcccEEEEEeecHHHHHHHHHHhCCc--eeCCee
Q 028130 43 PDAANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRS--VLEGRL 120 (213)
Q Consensus 43 ~~~~~~~~~v~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~--~i~g~~ 120 (213)
+....+.++|||+|||+.+++++|+++|++||.|..|.|+.+ +|||||+|++.++|++||+.|++. .|.|+.
T Consensus 9 ~~~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~ 82 (104)
T 1wex_A 9 HHKVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAGQQ 82 (104)
T ss_dssp CCCCCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSB
T ss_pred CCcCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCEE
Confidence 345567889999999999999999999999999999988754 489999999999999999988764 599999
Q ss_pred eEEEecccCCCC
Q 028130 121 ITVEKAKRSRGR 132 (213)
Q Consensus 121 i~V~~a~~~~~~ 132 (213)
|.|++++.+...
T Consensus 83 l~V~~a~~~~~~ 94 (104)
T 1wex_A 83 AFFNYSTSKRIT 94 (104)
T ss_dssp CEEEECSSSSCC
T ss_pred EEEEEccCcccc
Confidence 999999876543
No 92
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.83 E-value=2.3e-20 Score=132.14 Aligned_cols=82 Identities=21% Similarity=0.276 Sum_probs=72.7
Q ss_pred CCCCCCCCeEEEeCCCCCCcHHHHHHHHccCCCeEEEEEeeCCCCCCcccEEEEEeecHHHHHHHHHHhCCce--eCCee
Q 028130 43 PDAANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSV--LEGRL 120 (213)
Q Consensus 43 ~~~~~~~~~v~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~--i~g~~ 120 (213)
....+|+.+|||+|||..+++++|+++|++||.|..|.|+.. +|||||+|++.++|++||+.|++.. |.|++
T Consensus 15 ~~~~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~------kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~ 88 (100)
T 3r27_A 15 PHKTPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPK------KRQALVEFEDVLGACNAVNYAADNQIYIAGHP 88 (100)
T ss_dssp --CCCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCEEETTEE
T ss_pred cccCCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhcCCCceeCCcE
Confidence 344568899999999999999999999999999999998753 4899999999999999999999875 78999
Q ss_pred eEEEecccCC
Q 028130 121 ITVEKAKRSR 130 (213)
Q Consensus 121 i~V~~a~~~~ 130 (213)
|.|++++.+.
T Consensus 89 i~V~~S~~k~ 98 (100)
T 3r27_A 89 AFVNYSTSQK 98 (100)
T ss_dssp EEEEECSCSC
T ss_pred EEEEeccccc
Confidence 9999998653
No 93
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.83 E-value=2.3e-20 Score=142.46 Aligned_cols=88 Identities=28% Similarity=0.423 Sum_probs=82.2
Q ss_pred CCCCCCCeEEEeCCCCCCcHHHHHHHHccCCCeEEEEEeeCCCCCCcccEEEEEeecHHHHHHHHHHhCCceeCCeeeEE
Q 028130 44 DAANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLITV 123 (213)
Q Consensus 44 ~~~~~~~~v~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V 123 (213)
....+.++|||+|||..+++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|++||+.|||..|+|+.|.|
T Consensus 65 ~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 144 (158)
T 2kn4_A 65 MDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRV 144 (158)
T ss_dssp CCCCBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 34466789999999999999999999999999999999999889999999999999999999999999999999999999
Q ss_pred EecccCCC
Q 028130 124 EKAKRSRG 131 (213)
Q Consensus 124 ~~a~~~~~ 131 (213)
.+++....
T Consensus 145 ~~a~~~~~ 152 (158)
T 2kn4_A 145 QMARYGRP 152 (158)
T ss_dssp EEECCSSC
T ss_pred EECCCCCC
Confidence 99987653
No 94
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.83 E-value=2.2e-20 Score=137.03 Aligned_cols=83 Identities=20% Similarity=0.384 Sum_probs=78.1
Q ss_pred CCCCeEEEeCCCCCCcHHHHHHHHccCCCeEEEEEeeCCCCCCcccEEEEEeecHHHHHHHHHHhCCceeCCeeeEEEec
Q 028130 47 NPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLITVEKA 126 (213)
Q Consensus 47 ~~~~~v~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~a 126 (213)
.+.++|||+|||..+++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|++|| .|||..|+|+.|.|+++
T Consensus 34 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 112 (124)
T 2jwn_A 34 IDKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPK 112 (124)
T ss_dssp HHHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEEC
Confidence 34689999999999999999999999999999999999889999999999999999999999 69999999999999998
Q ss_pred ccCC
Q 028130 127 KRSR 130 (213)
Q Consensus 127 ~~~~ 130 (213)
+...
T Consensus 113 ~~~~ 116 (124)
T 2jwn_A 113 RTNM 116 (124)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 8654
No 95
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.83 E-value=5.2e-21 Score=135.54 Aligned_cols=88 Identities=24% Similarity=0.428 Sum_probs=75.2
Q ss_pred CCCCCCCCCCeEEEeCCCCCCcHHHHHHHHccCCCeEEEEEeeCC-CCCCcccEEEEEeecHHHHHHHHHHhCCceeCCe
Q 028130 41 RSPDAANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDP-RTRESCGFAFVTMETVEGADRCIKYLNRSVLEGR 119 (213)
Q Consensus 41 ~~~~~~~~~~~v~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~-~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~ 119 (213)
..+......++|||+|||..+++++|+++|++|| |..|.|+.+. .+++++|||||+|.+.++|++|| .|||..|+|+
T Consensus 11 ~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~ 88 (100)
T 2j76_E 11 RSRLPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNR 88 (100)
T ss_dssp ---------CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTB
T ss_pred CCcCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCe
Confidence 4445567789999999999999999999999999 9999999987 58999999999999999999999 7999999999
Q ss_pred eeEEEecccCC
Q 028130 120 LITVEKAKRSR 130 (213)
Q Consensus 120 ~i~V~~a~~~~ 130 (213)
.|.|++++...
T Consensus 89 ~l~V~~a~~~~ 99 (100)
T 2j76_E 89 RIRVDVADQAQ 99 (100)
T ss_dssp CCCCEECCCSC
T ss_pred EEEEEeccCCC
Confidence 99999997653
No 96
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.83 E-value=6.2e-20 Score=129.03 Aligned_cols=81 Identities=26% Similarity=0.368 Sum_probs=74.1
Q ss_pred CCCCCCCeEEEeCCCCCCcHHHHHHHHccCCCeEEEEEeeCCCCCCcccEEEEEeecHHHHHHHHHHhCCceeC--Ceee
Q 028130 44 DAANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLE--GRLI 121 (213)
Q Consensus 44 ~~~~~~~~v~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~--g~~i 121 (213)
....+.++|||+|||..+++++|+++|++||.|..|.|+.+ +|||||+|.+.++|++||+.||+..|. |+.|
T Consensus 12 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l 85 (97)
T 1why_A 12 GKANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRL 85 (97)
T ss_dssp CCCCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEE
Confidence 34466789999999999999999999999999999998754 479999999999999999999999999 9999
Q ss_pred EEEecccCC
Q 028130 122 TVEKAKRSR 130 (213)
Q Consensus 122 ~V~~a~~~~ 130 (213)
.|++++++.
T Consensus 86 ~V~~a~~~~ 94 (97)
T 1why_A 86 RVDFAKSGP 94 (97)
T ss_dssp EEEECCCCC
T ss_pred EEEECCCCC
Confidence 999998764
No 97
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.83 E-value=6.3e-20 Score=143.16 Aligned_cols=86 Identities=23% Similarity=0.342 Sum_probs=80.3
Q ss_pred CCCCCCCeEEEeCCCCCCcHHHHHHHHccCCCeEEEEEeeCCCCCCcccEEEEEeecHHHHHHHHHHhCCceeCCeeeEE
Q 028130 44 DAANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLITV 123 (213)
Q Consensus 44 ~~~~~~~~v~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V 123 (213)
....++++|||+|||..+++++|+++|++||+|+.|.|+.+. ++.++|||||+|.+.++|++||+.|||..|+|+.|.|
T Consensus 83 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V 161 (177)
T 2f3j_A 83 EGVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDI 161 (177)
T ss_dssp SSCTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEE
Confidence 345667899999999999999999999999999999999988 8999999999999999999999999999999999999
Q ss_pred EecccCC
Q 028130 124 EKAKRSR 130 (213)
Q Consensus 124 ~~a~~~~ 130 (213)
+++....
T Consensus 162 ~~a~~~~ 168 (177)
T 2f3j_A 162 QLVASQI 168 (177)
T ss_dssp EEESSGG
T ss_pred EEecCCC
Confidence 9987654
No 98
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=3.3e-20 Score=132.09 Aligned_cols=84 Identities=20% Similarity=0.277 Sum_probs=76.1
Q ss_pred CCCCCCCeEEEeCCCCCCcHHHHHHHHccCCCeEEEEEeeCCCCCCcccEEEEEeecHHHHHHHHHHhCCceeCCeeeEE
Q 028130 44 DAANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLITV 123 (213)
Q Consensus 44 ~~~~~~~~v~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V 123 (213)
....+.++|||+|||+.+++++|+++|.+||.| .|.|+.++ +++++|||||+|.+.++|++||+ +|+..|+|+.|.|
T Consensus 10 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V 86 (102)
T 1wez_A 10 FQSTTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGP-DGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVEL 86 (102)
T ss_dssp CCCSSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESS-SSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECC-CCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEE
Confidence 345667899999999999999999999999954 99999987 89999999999999999999996 8999999999999
Q ss_pred EecccCC
Q 028130 124 EKAKRSR 130 (213)
Q Consensus 124 ~~a~~~~ 130 (213)
.++....
T Consensus 87 ~~~~~~~ 93 (102)
T 1wez_A 87 FLNSTAG 93 (102)
T ss_dssp EEECCCC
T ss_pred EECCCCC
Confidence 9877554
No 99
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.83 E-value=1.4e-20 Score=136.79 Aligned_cols=75 Identities=20% Similarity=0.274 Sum_probs=65.4
Q ss_pred CCCCeEEEeCCCCCCcHHHHHHHHccCCCeEEEEEeeCCCCCCcccEEEEEeecHHHHHHHHHHhCCceeCCee-----e
Q 028130 47 NPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRL-----I 121 (213)
Q Consensus 47 ~~~~~v~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~-----i 121 (213)
...++|||+|||..+++++|+++|.+||+|+.|.|+.+ |||||+|++.++|++||+.|||.+|+|+. |
T Consensus 14 r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i 86 (115)
T 3beg_B 14 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYI 86 (115)
T ss_dssp ---CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEE
Confidence 45789999999999999999999999999999999765 79999999999999999999999999998 5
Q ss_pred EEEeccc
Q 028130 122 TVEKAKR 128 (213)
Q Consensus 122 ~V~~a~~ 128 (213)
.|..+..
T Consensus 87 ~v~~~~~ 93 (115)
T 3beg_B 87 RVKVDGP 93 (115)
T ss_dssp EEEECC-
T ss_pred EeccCCC
Confidence 5555443
No 100
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.83 E-value=5.2e-20 Score=127.66 Aligned_cols=80 Identities=29% Similarity=0.506 Sum_probs=73.6
Q ss_pred CCCCCCCeEEEeCCCCCCcHHHHHHHHccCCCeEEEEEeeCCCCCCcccEEEEEeecHHHHHHHHHHhCCceeCCeeeEE
Q 028130 44 DAANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLITV 123 (213)
Q Consensus 44 ~~~~~~~~v~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V 123 (213)
....+.++|||+|||..+++++|+++|++||.|..|.|+. +||||+|.+.++|++||+.|||..|+|+.|.|
T Consensus 4 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 75 (90)
T 2dnp_A 4 GSSGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK--------DYAFVHMEKEADAKAAIAQLNGKEVKGKRINV 75 (90)
T ss_dssp CSSCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECS--------SCEEEEESCHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCEECCcEEEE
Confidence 3456788999999999999999999999999999999874 49999999999999999999999999999999
Q ss_pred EecccCCC
Q 028130 124 EKAKRSRG 131 (213)
Q Consensus 124 ~~a~~~~~ 131 (213)
.+++....
T Consensus 76 ~~a~~~~~ 83 (90)
T 2dnp_A 76 ELSTKGQK 83 (90)
T ss_dssp EESCCCCC
T ss_pred EECCCCCC
Confidence 99987653
No 101
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.83 E-value=6.3e-20 Score=129.49 Aligned_cols=82 Identities=27% Similarity=0.384 Sum_probs=75.0
Q ss_pred CCCCCCCeEEEeCCCCCCcHHHHHHHHccCCCeEEEEEeeCCCCCCcccEEEEEeecHHHHHHHHHHhCCceeCCeeeEE
Q 028130 44 DAANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLITV 123 (213)
Q Consensus 44 ~~~~~~~~v~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V 123 (213)
....+.++|||+|||..+++++|+++|.+||+|..|.|+.+ +|||||+|.+.++|++||+.|||..|+|+.|.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v 83 (99)
T 2cpj_A 10 KTFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRV 83 (99)
T ss_dssp CCCCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEE
T ss_pred CcCCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEE
Confidence 44567789999999999999999999999999999999854 489999999999999999999999999999999
Q ss_pred EecccCCC
Q 028130 124 EKAKRSRG 131 (213)
Q Consensus 124 ~~a~~~~~ 131 (213)
.+++.+..
T Consensus 84 ~~a~~~~~ 91 (99)
T 2cpj_A 84 RFACHSAS 91 (99)
T ss_dssp EESSCCSC
T ss_pred EEcCCCCC
Confidence 99987653
No 102
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=1.3e-20 Score=134.45 Aligned_cols=81 Identities=15% Similarity=0.290 Sum_probs=75.9
Q ss_pred CCCCCeEEEeCCCCCCcHHHHHHHHccCCCeEEEEEeeCCCCCCcccEEEEEeecHHHHHHHHHHhCCceeCCeeeEEEe
Q 028130 46 ANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLITVEK 125 (213)
Q Consensus 46 ~~~~~~v~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~ 125 (213)
..+..+|||+|||..+|+++|+++|++||.|..|.|+.++. +.++|||||+|.+.++|++||. +++..|+|+.|.|.+
T Consensus 8 ~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~ 85 (103)
T 1s79_A 8 DVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILF 85 (103)
T ss_dssp CSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEE
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEE
Confidence 45568999999999999999999999999999999999886 9999999999999999999999 999999999999998
Q ss_pred ccc
Q 028130 126 AKR 128 (213)
Q Consensus 126 a~~ 128 (213)
+..
T Consensus 86 ~~~ 88 (103)
T 1s79_A 86 KDD 88 (103)
T ss_dssp HHH
T ss_pred chH
Confidence 754
No 103
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=1.6e-19 Score=127.42 Aligned_cols=83 Identities=31% Similarity=0.375 Sum_probs=74.9
Q ss_pred CCCCCCCCCCCeEEEeCCCCCCcHHHHHHHHccC--CCeEEEEEeeCCCCCCcccEEEEEeecHHHHHHHHHHhCCceeC
Q 028130 40 SRSPDAANPGNNLYVTGLSTRVTNADLEKFFGGE--GKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLE 117 (213)
Q Consensus 40 ~~~~~~~~~~~~v~V~nLp~~~t~~~L~~~F~~~--G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~ 117 (213)
....+...+.++|||+|||..+++++|+++|.+| |.|..|.++ +|||||+|.+.++|++||+.|||..|+
T Consensus 6 ~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~ 77 (99)
T 2cpd_A 6 SGDEDTMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVLD 77 (99)
T ss_dssp CCCCSCSSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEET
T ss_pred cccccccCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeC
Confidence 3445566778999999999999999999999999 999988875 379999999999999999999999999
Q ss_pred CeeeEEEecccCC
Q 028130 118 GRLITVEKAKRSR 130 (213)
Q Consensus 118 g~~i~V~~a~~~~ 130 (213)
|+.|.|.+++++.
T Consensus 78 g~~l~v~~a~~~~ 90 (99)
T 2cpd_A 78 GSPIEVTLAKPVD 90 (99)
T ss_dssp TEEEEEECCCCCC
T ss_pred CcEEEEEECCCCC
Confidence 9999999998765
No 104
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=1.3e-20 Score=136.57 Aligned_cols=85 Identities=20% Similarity=0.278 Sum_probs=78.4
Q ss_pred CCCCCCCeEEEeCCCCCCcHHHHHHHHccCCCe-EEEEEeeCCCCCCcccEEEEEeecHHHHHHHHHHhCCceeCCeeeE
Q 028130 44 DAANPGNNLYVTGLSTRVTNADLEKFFGGEGKV-TECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLIT 122 (213)
Q Consensus 44 ~~~~~~~~v~V~nLp~~~t~~~L~~~F~~~G~i-~~~~i~~~~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~ 122 (213)
+...+.++|||+|||..+++++|+++|.+||.| ..|.|+.++ ++.++|||||+|.+.++|++||+. |+..|+|+.|.
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~ 87 (114)
T 2cpy_A 10 DVNSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAF 87 (114)
T ss_dssp SCCSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEE
T ss_pred CCCCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEE
Confidence 345677899999999999999999999999999 889999988 899999999999999999999995 99999999999
Q ss_pred EEecccCC
Q 028130 123 VEKAKRSR 130 (213)
Q Consensus 123 V~~a~~~~ 130 (213)
|.++..+.
T Consensus 88 v~~a~~~~ 95 (114)
T 2cpy_A 88 VHVVTLED 95 (114)
T ss_dssp EEEECHHH
T ss_pred EEECCHHH
Confidence 99987654
No 105
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.83 E-value=1e-20 Score=126.70 Aligned_cols=75 Identities=28% Similarity=0.516 Sum_probs=72.2
Q ss_pred eEEEeCCCCCCcHHHHHHHHccCCCeEEEEEeeCCCCCCcccEEEEEeecHHHHHHHHHHhCCceeCCeeeEEEec
Q 028130 51 NLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLITVEKA 126 (213)
Q Consensus 51 ~v~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~a 126 (213)
+|||+|||..+++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|++||+ ||+..|+|+.|.|.+|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 59999999999999999999999999999999998899999999999999999999998 9999999999999875
No 106
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.83 E-value=4.3e-20 Score=131.94 Aligned_cols=83 Identities=16% Similarity=0.160 Sum_probs=76.0
Q ss_pred CCCCCCeEEEeCCCCCC------cHHHHHHHHccCCCeEEEEEeeCCCCCCcccEEEEEeecHHHHHHHHHHhCCceeCC
Q 028130 45 AANPGNNLYVTGLSTRV------TNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEG 118 (213)
Q Consensus 45 ~~~~~~~v~V~nLp~~~------t~~~L~~~F~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g 118 (213)
.....++|||+|||..+ ++++|+++|++||.|..|.|+ ..++.++|||||+|.+.++|++||..|||..|+|
T Consensus 11 ~~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g 88 (105)
T 2nlw_A 11 ADGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDK 88 (105)
T ss_dssp CCSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECST
T ss_pred CCCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCC
Confidence 34557899999999999 889999999999999999988 4588999999999999999999999999999999
Q ss_pred e-eeEEEecccC
Q 028130 119 R-LITVEKAKRS 129 (213)
Q Consensus 119 ~-~i~V~~a~~~ 129 (213)
+ .|.|.++...
T Consensus 89 ~~~l~V~~a~~~ 100 (105)
T 2nlw_A 89 QHTFRVNLFTDF 100 (105)
T ss_dssp TCEEEEECSCCC
T ss_pred CceEEEEEcchH
Confidence 8 9999998754
No 107
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=5.4e-20 Score=134.36 Aligned_cols=88 Identities=24% Similarity=0.300 Sum_probs=76.5
Q ss_pred CCCCCCCCCCCCeEEEeCCCCCCcHHHHHHHHccCCCeEEEEEeeCCCCCCcccEEEEEeecHHHHHHHHHHhCC--cee
Q 028130 39 RSRSPDAANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNR--SVL 116 (213)
Q Consensus 39 ~~~~~~~~~~~~~v~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~Ai~~l~g--~~i 116 (213)
+........+.++|||+|||+.+++++|+++|++||.|+.|.|+.+ +|||||+|++.++|++||+.|++ ..|
T Consensus 21 ~~~~~~~~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l 94 (119)
T 2ad9_A 21 MGDSRSAGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVL 94 (119)
T ss_dssp -CCTTSCSSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCB
T ss_pred cccccccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceE
Confidence 3444455677899999999999999999999999999999999865 48999999999999999998874 689
Q ss_pred CCeeeEEEecccCCCC
Q 028130 117 EGRLITVEKAKRSRGR 132 (213)
Q Consensus 117 ~g~~i~V~~a~~~~~~ 132 (213)
.|++|.|++++.+...
T Consensus 95 ~Gr~l~V~~a~~k~~~ 110 (119)
T 2ad9_A 95 RGQPIYIQFSNHKELK 110 (119)
T ss_dssp TTBCCEEEECSSSSCC
T ss_pred CCeEEEEEEccCCCCC
Confidence 9999999999876543
No 108
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=8.6e-20 Score=130.14 Aligned_cols=84 Identities=24% Similarity=0.343 Sum_probs=76.4
Q ss_pred CCCCCCeEEEeCCCCCCcHHHHHHHHccCCCeEE-EEEeeCCCCCCcccEEEEEeecHHHHHHHHHHhCCceeCCeeeEE
Q 028130 45 AANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTE-CHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLITV 123 (213)
Q Consensus 45 ~~~~~~~v~V~nLp~~~t~~~L~~~F~~~G~i~~-~~i~~~~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V 123 (213)
.....++|||+|||+.+++++|+++|.+||.|.. |.|+.+ .+++++|||||+|.+.++|++||+. |+..|+|+.|.|
T Consensus 11 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v 88 (104)
T 1wg5_A 11 DTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEI 88 (104)
T ss_dssp SCSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEE
Confidence 3456789999999999999999999999999987 888887 6899999999999999999999996 999999999999
Q ss_pred EecccCC
Q 028130 124 EKAKRSR 130 (213)
Q Consensus 124 ~~a~~~~ 130 (213)
.++..+.
T Consensus 89 ~~~~~~~ 95 (104)
T 1wg5_A 89 FKSSRAE 95 (104)
T ss_dssp EEECTTT
T ss_pred EECCHHH
Confidence 9986543
No 109
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=6.5e-20 Score=125.63 Aligned_cols=80 Identities=25% Similarity=0.389 Sum_probs=73.0
Q ss_pred CCCCCCCCCeEEEeCCCCCCcHHHHHHHHccCCCeEEEEEeeCCCCCCcccEEEEEeecHHHHHHHHHHh-CCceeCCee
Q 028130 42 SPDAANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYL-NRSVLEGRL 120 (213)
Q Consensus 42 ~~~~~~~~~~v~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~Ai~~l-~g~~i~g~~ 120 (213)
.+....+.++|||+|||..+++++|+++|.+||.|..|.|+.+ +|||||+|.+.++|++||+.| ++..|+|+.
T Consensus 5 ~~~~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~------kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~ 78 (85)
T 2ytc_A 5 SSGEDKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR------QQCAFIQFATRQAAEVAAEKSFNKLIVNGRR 78 (85)
T ss_dssp CCCSCSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHTTTTTCEETTEE
T ss_pred CCCCCCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC------CCEEEEEECCHHHHHHHHHHhcCCeeECCCE
Confidence 3445567889999999999999999999999999999999864 489999999999999999998 999999999
Q ss_pred eEEEecc
Q 028130 121 ITVEKAK 127 (213)
Q Consensus 121 i~V~~a~ 127 (213)
|.|+|++
T Consensus 79 l~v~~ak 85 (85)
T 2ytc_A 79 LNVKWGR 85 (85)
T ss_dssp CCEEECC
T ss_pred EEEEecC
Confidence 9999975
No 110
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.82 E-value=9.2e-20 Score=131.10 Aligned_cols=79 Identities=25% Similarity=0.460 Sum_probs=72.2
Q ss_pred CCCCCCCeEEEeCCCCC-CcHHHHHHHHccCCCeEEEEEeeCCCCCCcccEEEEEeecHHHHHHHHHHhCCceeCCeeeE
Q 028130 44 DAANPGNNLYVTGLSTR-VTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLIT 122 (213)
Q Consensus 44 ~~~~~~~~v~V~nLp~~-~t~~~L~~~F~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~ 122 (213)
++..+.++|||+|||.. +++++|+++|.+||.|..|.| .+|||||+|.+.++|++||+.||+..|+|+.|.
T Consensus 22 ~~~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 93 (110)
T 1wf1_A 22 DPKSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLD 93 (110)
T ss_dssp CCTTCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECC
T ss_pred CCCCCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEE
Confidence 44556789999999999 999999999999999999988 348999999999999999999999999999999
Q ss_pred EEecccCC
Q 028130 123 VEKAKRSR 130 (213)
Q Consensus 123 V~~a~~~~ 130 (213)
|++++...
T Consensus 94 V~~a~~~~ 101 (110)
T 1wf1_A 94 INMAGEPK 101 (110)
T ss_dssp EEESCCCC
T ss_pred EEECCCCC
Confidence 99997654
No 111
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.82 E-value=4.3e-20 Score=134.79 Aligned_cols=84 Identities=23% Similarity=0.346 Sum_probs=77.3
Q ss_pred CCCCCCCeEEEeCCCCCCcHHHHHHHHccCCC---eEEEEEeeCCCCCCcccEEEEEeecHHHHHHHHHHhCCceeCCee
Q 028130 44 DAANPGNNLYVTGLSTRVTNADLEKFFGGEGK---VTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRL 120 (213)
Q Consensus 44 ~~~~~~~~v~V~nLp~~~t~~~L~~~F~~~G~---i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~ 120 (213)
......++|||+|||+.+++++|+++|.+||. |..|.|+.++. ++++|||||+|.+.++|++||+ ||+..|+|+.
T Consensus 12 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~ 89 (118)
T 2db1_A 12 PEGGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALK-KDRESMGHRY 89 (118)
T ss_dssp SCBCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEE
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCeECCeE
Confidence 44566789999999999999999999999999 89999999876 9999999999999999999999 9999999999
Q ss_pred eEEEecccC
Q 028130 121 ITVEKAKRS 129 (213)
Q Consensus 121 i~V~~a~~~ 129 (213)
|.|.++..+
T Consensus 90 i~V~~a~~~ 98 (118)
T 2db1_A 90 IEVFKSHRT 98 (118)
T ss_dssp EEEEEECHH
T ss_pred EEEEECCHH
Confidence 999998644
No 112
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=1.5e-20 Score=126.31 Aligned_cols=76 Identities=33% Similarity=0.590 Sum_probs=73.1
Q ss_pred CeEEEeCCCCCCcHHHHHHHHccCCCeEEEEEeeCCCCCCcccEEEEEeecHHHHHHHHHHhCCceeCCeeeEEEec
Q 028130 50 NNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLITVEKA 126 (213)
Q Consensus 50 ~~v~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~a 126 (213)
++|||+|||..+++++|+++|++||+|..|.|+.++.++.++|||||+|.+.++|++||+.++ ..|+|+.|.|++|
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 579999999999999999999999999999999998899999999999999999999999998 9999999999987
No 113
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.82 E-value=3.1e-20 Score=134.23 Aligned_cols=81 Identities=19% Similarity=0.200 Sum_probs=72.2
Q ss_pred CCCCCCeEEEeCCCCCCcHHHHHHHHccCC-CeEEEEEeeCCCCCCcccEEEEEeecHHHHHHHHHHhCCceeCCeeeEE
Q 028130 45 AANPGNNLYVTGLSTRVTNADLEKFFGGEG-KVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLITV 123 (213)
Q Consensus 45 ~~~~~~~v~V~nLp~~~t~~~L~~~F~~~G-~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V 123 (213)
.....++|||+|||+.+++++|+++|.+|| +|..+.|+. ..++|||||+|.+.++|++||+.|||.+|+|+.|.|
T Consensus 24 ~p~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~----~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V 99 (111)
T 2jvr_A 24 LPAKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNT----RDFDGTGALEFPSEEILVEALERLNNIEFRGSVITV 99 (111)
T ss_dssp -CCCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSS----CSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEc----CCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEE
Confidence 345678999999999999999999999999 899998853 236799999999999999999999999999999999
Q ss_pred EecccC
Q 028130 124 EKAKRS 129 (213)
Q Consensus 124 ~~a~~~ 129 (213)
+++...
T Consensus 100 ~~a~~~ 105 (111)
T 2jvr_A 100 ERDDNP 105 (111)
T ss_dssp EESCC-
T ss_pred EECCCC
Confidence 998754
No 114
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.82 E-value=7.1e-20 Score=125.86 Aligned_cols=75 Identities=21% Similarity=0.254 Sum_probs=70.1
Q ss_pred CCCCeEEEeCCCCCCcHHHHHHHHccCCCeEEEEEeeCCCCCCcccEEEEEeecHHHHHHHHHHhCCceeCCeeeEEEec
Q 028130 47 NPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLITVEKA 126 (213)
Q Consensus 47 ~~~~~v~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~a 126 (213)
-....|||+||++.+|+++|+++|.+||+|..+.+.. ++|||||+|.+.++|++||+.||+..|.|++|.|.+|
T Consensus 5 ~~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A 78 (89)
T 2wbr_A 5 WGSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESP 78 (89)
T ss_dssp CCCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred CccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEEC
Confidence 3467899999999999999999999999999999876 4599999999999999999999999999999999998
Q ss_pred c
Q 028130 127 K 127 (213)
Q Consensus 127 ~ 127 (213)
.
T Consensus 79 ~ 79 (89)
T 2wbr_A 79 S 79 (89)
T ss_dssp C
T ss_pred C
Confidence 4
No 115
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.82 E-value=5.6e-20 Score=135.99 Aligned_cols=84 Identities=13% Similarity=0.315 Sum_probs=75.1
Q ss_pred CCCCCCCeEEEeCCCCCCcHHHHH----HHHccCCCeEEEEEeeCCCCCCcccEEEEEeecHHHHHHHHHHhCCceeCCe
Q 028130 44 DAANPGNNLYVTGLSTRVTNADLE----KFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGR 119 (213)
Q Consensus 44 ~~~~~~~~v~V~nLp~~~t~~~L~----~~F~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~ 119 (213)
....+.++|||+|||+.+++++|+ ++|++||.|..|.+.. ++.++|||||+|.+.++|+.||..|||..|.|+
T Consensus 24 ~~~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr 100 (127)
T 2a3j_A 24 PHTEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQGYPFQGN 100 (127)
T ss_dssp CCCSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTS
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCC
Confidence 345668899999999999999876 6999999999988753 677899999999999999999999999999999
Q ss_pred eeEEEecccCC
Q 028130 120 LITVEKAKRSR 130 (213)
Q Consensus 120 ~i~V~~a~~~~ 130 (213)
.|.|.|++.+.
T Consensus 101 ~l~V~~a~~~~ 111 (127)
T 2a3j_A 101 PLVITFSETPQ 111 (127)
T ss_dssp CCEEEECCCCC
T ss_pred EEEEEEccCcc
Confidence 99999998664
No 116
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=1.3e-19 Score=130.04 Aligned_cols=82 Identities=22% Similarity=0.395 Sum_probs=75.2
Q ss_pred CCCCCCeEEEeCCCCCCcHHHHHHHHccCCCeEEEEEeeCCCCCCcccEEEEEeecHHHHHHHHHHhCCceeCCeeeEEE
Q 028130 45 AANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLITVE 124 (213)
Q Consensus 45 ~~~~~~~v~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~ 124 (213)
...+.++|||+|||..+++++|+++|.+||.|..|.|+.+ +|||||+|.+.++|++||+.|||..|+|+.|.|.
T Consensus 21 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 94 (109)
T 1x4g_A 21 SSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCY 94 (109)
T ss_dssp SCSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 3456789999999999999999999999999999999875 4899999999999999999999999999999999
Q ss_pred ecccCCCC
Q 028130 125 KAKRSRGR 132 (213)
Q Consensus 125 ~a~~~~~~ 132 (213)
+++.....
T Consensus 95 ~a~~~~~~ 102 (109)
T 1x4g_A 95 WGKESPDM 102 (109)
T ss_dssp CCCCCCSS
T ss_pred ecCCCCCC
Confidence 99877543
No 117
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=1.2e-19 Score=127.68 Aligned_cols=82 Identities=21% Similarity=0.264 Sum_probs=72.9
Q ss_pred CCCCCCCeEEEeCCCCCCcHHHHHHHHccCCCeEEEEEeeCCCCCCcccEEEEEeecHHHHHHHHHHhCCceeCCeeeEE
Q 028130 44 DAANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLITV 123 (213)
Q Consensus 44 ~~~~~~~~v~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V 123 (213)
......++|||+|||..+++++|+++|.+||.|. +.++.+ .++|||||+|.+.++|++||+.|||..|+|+.|.|
T Consensus 14 ~~~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~----~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 88 (97)
T 2e5j_A 14 EGAPLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ----GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRV 88 (97)
T ss_dssp SSSCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred CCCCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC----CCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEE
Confidence 3455678999999999999999999999999996 666543 46789999999999999999999999999999999
Q ss_pred EecccCC
Q 028130 124 EKAKRSR 130 (213)
Q Consensus 124 ~~a~~~~ 130 (213)
++++++.
T Consensus 89 ~~a~~~~ 95 (97)
T 2e5j_A 89 ALARQQR 95 (97)
T ss_dssp EECCCCC
T ss_pred EEcCCCC
Confidence 9998764
No 118
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.82 E-value=7.9e-20 Score=131.38 Aligned_cols=82 Identities=23% Similarity=0.414 Sum_probs=72.8
Q ss_pred CCCCCCCCCCeEEEeCCCCCCcHHHHHHHHccCCCeEEEEEeeCCCCCCcccEEEEEeecHHHHHHHHHHhCCceeCCee
Q 028130 41 RSPDAANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRL 120 (213)
Q Consensus 41 ~~~~~~~~~~~v~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~ 120 (213)
...+...+.++|||+|||..+++++|+++|++||.|..|.|+ +|||||+|.+.++|++||+.|||..|+|+.
T Consensus 23 ~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 94 (108)
T 2jvo_A 23 HRQEGELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFANQP 94 (108)
T ss_dssp -----CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETTEE
T ss_pred cccCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECCeE
Confidence 344556778999999999999999999999999999999987 389999999999999999999999999999
Q ss_pred eEEEecccCC
Q 028130 121 ITVEKAKRSR 130 (213)
Q Consensus 121 i~V~~a~~~~ 130 (213)
|.|++++...
T Consensus 95 l~V~~a~~~~ 104 (108)
T 2jvo_A 95 LEVVYSKLPA 104 (108)
T ss_dssp CEEESCSCCC
T ss_pred EEEEEecCCC
Confidence 9999998764
No 119
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.82 E-value=2.8e-20 Score=150.80 Aligned_cols=82 Identities=21% Similarity=0.317 Sum_probs=77.1
Q ss_pred CCCeEEEeCCCCCCcHHHHHHHHccCC--CeEEEEEeeCCCCCCcccEEEEEeecHHHHHHHHHHhCCceeCCeeeEEEe
Q 028130 48 PGNNLYVTGLSTRVTNADLEKFFGGEG--KVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLITVEK 125 (213)
Q Consensus 48 ~~~~v~V~nLp~~~t~~~L~~~F~~~G--~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~ 125 (213)
..++|||+||++.+|+++|+++|.+|| .|+.|.|+.++.+++++|||||+|.+.++|++||+.||++.|+|+.|.|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 567999999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred cccC
Q 028130 126 AKRS 129 (213)
Q Consensus 126 a~~~ 129 (213)
++..
T Consensus 147 a~~~ 150 (229)
T 3q2s_C 147 VNKQ 150 (229)
T ss_dssp CCHH
T ss_pred CCCC
Confidence 8643
No 120
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.70 E-value=1e-21 Score=142.69 Aligned_cols=87 Identities=25% Similarity=0.368 Sum_probs=81.0
Q ss_pred CCCCCCeEEEeCCCCCCcHHHHHHHHccCCCeEE--------EEEeeCCCCCCcccEEEEEeecHHHHHHHHHHhCCcee
Q 028130 45 AANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTE--------CHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVL 116 (213)
Q Consensus 45 ~~~~~~~v~V~nLp~~~t~~~L~~~F~~~G~i~~--------~~i~~~~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i 116 (213)
...+.++|||+|||..+++++|+++|++||.|.. |.|+.++.++.++|||||+|.+.++|++||+.||+..|
T Consensus 3 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 82 (116)
T 2lcw_A 3 DNSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEF 82 (116)
Confidence 3467789999999999999999999999999998 88998888899999999999999999999999999999
Q ss_pred CCeeeEEEecccCCC
Q 028130 117 EGRLITVEKAKRSRG 131 (213)
Q Consensus 117 ~g~~i~V~~a~~~~~ 131 (213)
+|+.|.|++++.+..
T Consensus 83 ~g~~l~V~~a~~~~~ 97 (116)
T 2lcw_A 83 SGNPIKVSFATRRAD 97 (116)
Confidence 999999999987653
No 121
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.81 E-value=5.2e-20 Score=129.32 Aligned_cols=79 Identities=16% Similarity=0.358 Sum_probs=71.4
Q ss_pred CCCCCCeEEEeCCCC-CCcHHHHHHHHccCCCeEEEEEeeCCCCCCcccEEEEEeecHHHHHHHHHHhCCceeCCeeeEE
Q 028130 45 AANPGNNLYVTGLST-RVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLITV 123 (213)
Q Consensus 45 ~~~~~~~v~V~nLp~-~~t~~~L~~~F~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V 123 (213)
..++.++|||+|||. .+++++|+++|.+||.|..|.|. +|||||+|.+.++|++||+.|||..|.|+.|.|
T Consensus 6 ~~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 77 (96)
T 2kvi_A 6 NIPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLIL 77 (96)
T ss_dssp ---CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCE
T ss_pred cCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEE
Confidence 456788999999998 99999999999999999999985 389999999999999999999999999999999
Q ss_pred EecccCCC
Q 028130 124 EKAKRSRG 131 (213)
Q Consensus 124 ~~a~~~~~ 131 (213)
++++....
T Consensus 78 ~~a~~~~~ 85 (96)
T 2kvi_A 78 EVSSSNAR 85 (96)
T ss_dssp EEEECCCC
T ss_pred EEcCcCCC
Confidence 99987653
No 122
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.81 E-value=6.7e-21 Score=132.06 Aligned_cols=81 Identities=30% Similarity=0.486 Sum_probs=73.9
Q ss_pred CeEEEeCCCCCCcHHHHHHHHccCCCeEEEEEeeCCCCCCcccEEEEEeecHHHHHHHHHHhCCceeCCeeeEEEecccC
Q 028130 50 NNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLITVEKAKRS 129 (213)
Q Consensus 50 ~~v~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~a~~~ 129 (213)
++|||+|||..+++++|+++|++||+|..|.|+.++.++.++|||||+|.+.+ |++|+..|||..|+|+.|.|++|...
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 48999999999999999999999999999999999889999999999999999 99999999999999999999999876
Q ss_pred CC
Q 028130 130 RG 131 (213)
Q Consensus 130 ~~ 131 (213)
..
T Consensus 81 ~~ 82 (90)
T 2ki2_A 81 KS 82 (90)
T ss_dssp --
T ss_pred CC
Confidence 53
No 123
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.81 E-value=9.5e-21 Score=134.13 Aligned_cols=84 Identities=23% Similarity=0.294 Sum_probs=75.8
Q ss_pred CCCCCCeEEEeCCCCCCcHHHHHHHHccCCCeEEEEEeeCCCCCCcccEEEEEeecHHHHHHHHHHhCCceeCCeeeEEE
Q 028130 45 AANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLITVE 124 (213)
Q Consensus 45 ~~~~~~~v~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~ 124 (213)
...+.++|||+|||..+++++|+++|.+||.|.. .++.+..++.++|||||+|.+.++|++||+ ||+..|.|+.|.|.
T Consensus 13 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~ 90 (101)
T 1fj7_A 13 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLE 90 (101)
T ss_dssp TCSCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEE
Confidence 3456789999999999999999999999999877 556666678899999999999999999999 99999999999999
Q ss_pred ecccCC
Q 028130 125 KAKRSR 130 (213)
Q Consensus 125 ~a~~~~ 130 (213)
++..+.
T Consensus 91 ~a~~~~ 96 (101)
T 1fj7_A 91 KPKGRD 96 (101)
T ss_dssp CCSCCC
T ss_pred EcCCCC
Confidence 998764
No 124
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.81 E-value=7.6e-20 Score=128.34 Aligned_cols=83 Identities=17% Similarity=0.373 Sum_probs=75.2
Q ss_pred CCCCCCeEEEeCCCCCCcHHHHH----HHHccCCCeEEEEEeeCCCCCCcccEEEEEeecHHHHHHHHHHhCCceeCCee
Q 028130 45 AANPGNNLYVTGLSTRVTNADLE----KFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRL 120 (213)
Q Consensus 45 ~~~~~~~v~V~nLp~~~t~~~L~----~~F~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~ 120 (213)
...+.++|||+|||..+++++|+ ++|.+||.|..|.|+. ++.++|||||+|.+.++|++||+.|||..|+|+.
T Consensus 4 ~~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 80 (97)
T 1nu4_A 4 ETRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKP 80 (97)
T ss_dssp --CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcE
Confidence 34678899999999999999999 9999999999998873 5677899999999999999999999999999999
Q ss_pred eEEEecccCC
Q 028130 121 ITVEKAKRSR 130 (213)
Q Consensus 121 i~V~~a~~~~ 130 (213)
|.|++++...
T Consensus 81 l~v~~a~~~~ 90 (97)
T 1nu4_A 81 MRIQYAKTDS 90 (97)
T ss_dssp CEEEECSSCC
T ss_pred EEEEEccCCC
Confidence 9999998764
No 125
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.81 E-value=1.1e-19 Score=128.58 Aligned_cols=78 Identities=23% Similarity=0.302 Sum_probs=71.5
Q ss_pred CCCCCeEEEeCCCCCCcHHHHHHHHccCCCeEEEEEeeCCCCCCcccEEEEEeecHHHHHHHHHHhCCceeCCeeeEEEe
Q 028130 46 ANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLITVEK 125 (213)
Q Consensus 46 ~~~~~~v~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~ 125 (213)
....++|||+|||..+++++|+++|.+||.|..|.|+. .+|||||+|.+.++|++||..|||..|+|+.|.|.+
T Consensus 24 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 97 (101)
T 2la4_A 24 PPRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYP------EKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGW 97 (101)
T ss_dssp CSSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCB
T ss_pred CCCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEe
Confidence 34568999999999999999999999999999999873 358999999999999999999999999999999999
Q ss_pred cccC
Q 028130 126 AKRS 129 (213)
Q Consensus 126 a~~~ 129 (213)
++++
T Consensus 98 a~~~ 101 (101)
T 2la4_A 98 GKER 101 (101)
T ss_dssp CCCC
T ss_pred ccCC
Confidence 8753
No 126
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=1.1e-19 Score=130.94 Aligned_cols=81 Identities=21% Similarity=0.302 Sum_probs=74.1
Q ss_pred CCCCCeEEEeCCCCCCcHHHHHHHHccCCCeEEEEEeeCCCCCCcccEEEEEeecHHHHHHHHHHhCCceeCCeeeEEEe
Q 028130 46 ANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLITVEK 125 (213)
Q Consensus 46 ~~~~~~v~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~ 125 (213)
....++|||+|||+.+++++|+++|++| .|..|.|+.++. +.++|||||+|.+.++|++|| .||+..|+|+.|.|..
T Consensus 13 ~~~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~-g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~ 89 (109)
T 2dnn_A 13 NPDDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHV-GRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSP 89 (109)
T ss_dssp CHHHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTT-CCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCC-CCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEE
Confidence 3456799999999999999999999999 899999999874 899999999999999999999 5999999999999988
Q ss_pred cccC
Q 028130 126 AKRS 129 (213)
Q Consensus 126 a~~~ 129 (213)
+...
T Consensus 90 a~~~ 93 (109)
T 2dnn_A 90 ATER 93 (109)
T ss_dssp CCHH
T ss_pred CCcc
Confidence 7643
No 127
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.80 E-value=8.3e-20 Score=127.97 Aligned_cols=82 Identities=15% Similarity=0.291 Sum_probs=74.0
Q ss_pred CCCCCCCeEEEeCCCCCCcHHHHHHHHccCCCeEEEEEeeCCCCCCcccEEEEEeecHHHHHHHHHHhCCceeCCeeeEE
Q 028130 44 DAANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLITV 123 (213)
Q Consensus 44 ~~~~~~~~v~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V 123 (213)
....+.++|||+|||..+++++|+++|.+||.|..+ ..++.++|||||+|.+.++|++||+.|||..|+|+.|.|
T Consensus 11 ~~~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 85 (96)
T 1fjc_A 11 KKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSL 85 (96)
T ss_dssp STTTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 445677899999999999999999999999988766 237888999999999999999999999999999999999
Q ss_pred EecccCC
Q 028130 124 EKAKRSR 130 (213)
Q Consensus 124 ~~a~~~~ 130 (213)
+++.++.
T Consensus 86 ~~a~~~~ 92 (96)
T 1fjc_A 86 YYTGEKG 92 (96)
T ss_dssp EECSSSC
T ss_pred EEcCCCC
Confidence 9997764
No 128
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.80 E-value=1.2e-19 Score=128.37 Aligned_cols=76 Identities=26% Similarity=0.410 Sum_probs=71.7
Q ss_pred CeEEEeCCCCCCcHHHHHHHHccCCCeEEEEEeeCCCCCCcccEEEEEeecHHHHHHHHHHhCCceeCCeeeEEEecccC
Q 028130 50 NNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLITVEKAKRS 129 (213)
Q Consensus 50 ~~v~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~a~~~ 129 (213)
++|||+|||..+++++|+++|++||+|..|.|+.+ ++|||||+|.+.++|++||+.||+..|+|+.|.|++++..
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 75 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGM 75 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCC
Confidence 58999999999999999999999999999999876 5689999999999999999999999999999999999876
Q ss_pred C
Q 028130 130 R 130 (213)
Q Consensus 130 ~ 130 (213)
.
T Consensus 76 ~ 76 (101)
T 2hvz_A 76 P 76 (101)
T ss_dssp C
T ss_pred C
Confidence 5
No 129
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.80 E-value=3.8e-19 Score=125.28 Aligned_cols=79 Identities=16% Similarity=0.376 Sum_probs=71.2
Q ss_pred CCCCCCCCeEEEeCCCC-CCcHHHHHHHHccCCCeEEEEEeeCCCCCCcccEEEEEeecHHHHHHHHHHhCCceeCCeee
Q 028130 43 PDAANPGNNLYVTGLST-RVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLI 121 (213)
Q Consensus 43 ~~~~~~~~~v~V~nLp~-~~t~~~L~~~F~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i 121 (213)
....++.++|||+|||. .+++++|+++|++||.|..|.|. +|||||+|.+.++|++||+.|||..|+|+.|
T Consensus 16 ~~~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l 87 (97)
T 2xnq_A 16 PRGSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKL 87 (97)
T ss_dssp ---CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEETTEEC
T ss_pred cCCCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence 34456788999999998 99999999999999999999884 4899999999999999999999999999999
Q ss_pred EEEecccC
Q 028130 122 TVEKAKRS 129 (213)
Q Consensus 122 ~V~~a~~~ 129 (213)
.|++++..
T Consensus 88 ~V~~a~~~ 95 (97)
T 2xnq_A 88 ILEVSSSN 95 (97)
T ss_dssp EEEECCCC
T ss_pred EEEecCCC
Confidence 99998765
No 130
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.80 E-value=7.8e-20 Score=136.73 Aligned_cols=84 Identities=20% Similarity=0.313 Sum_probs=77.4
Q ss_pred CCCCCCCeEEEeCCCCCCcHHHHHHHHccCCC---eEEEEEeeCCCCCCcccEEEEEeecHHHHHHHHHHhCCceeCCee
Q 028130 44 DAANPGNNLYVTGLSTRVTNADLEKFFGGEGK---VTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRL 120 (213)
Q Consensus 44 ~~~~~~~~v~V~nLp~~~t~~~L~~~F~~~G~---i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~ 120 (213)
......++|||+|||+++|+++|+++|++||. |..|.|+.++. ++++|||||+|.+.++|++||+ ||+..|+|+.
T Consensus 39 ~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~ 116 (136)
T 2hgl_A 39 PEGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRESMGHRY 116 (136)
T ss_dssp SSCCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEESSSSE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEECCEE
Confidence 34566789999999999999999999999999 88999999886 9999999999999999999999 9999999999
Q ss_pred eEEEecccC
Q 028130 121 ITVEKAKRS 129 (213)
Q Consensus 121 i~V~~a~~~ 129 (213)
|.|.++...
T Consensus 117 i~V~~a~~~ 125 (136)
T 2hgl_A 117 IEVFKSHRT 125 (136)
T ss_dssp EEEEECCHH
T ss_pred EEEEECChH
Confidence 999998643
No 131
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=2.4e-19 Score=124.99 Aligned_cols=79 Identities=29% Similarity=0.428 Sum_probs=70.2
Q ss_pred CCCCCeEEEeCCCCCCcHHHHHHHHccCCC-eEEEEEeeCCCCCCcccEEEEEeecHHHHHHHHHHhCC-ceeCCeeeEE
Q 028130 46 ANPGNNLYVTGLSTRVTNADLEKFFGGEGK-VTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNR-SVLEGRLITV 123 (213)
Q Consensus 46 ~~~~~~v~V~nLp~~~t~~~L~~~F~~~G~-i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~Ai~~l~g-~~i~g~~i~V 123 (213)
..+.++|||+|||..+++++|+++|.+||. |..+.+. .+|||||+|.+.++|++||+.||| ..|+|+.|.|
T Consensus 5 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v 77 (93)
T 2cqh_A 5 SSGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEV 77 (93)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEE
Confidence 456789999999999999999999999999 5555553 348999999999999999999999 9999999999
Q ss_pred EecccCCC
Q 028130 124 EKAKRSRG 131 (213)
Q Consensus 124 ~~a~~~~~ 131 (213)
++++++..
T Consensus 78 ~~a~~~~~ 85 (93)
T 2cqh_A 78 DYSVSKKL 85 (93)
T ss_dssp EECCCCCC
T ss_pred EEccCccc
Confidence 99987653
No 132
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.80 E-value=5.5e-20 Score=125.16 Aligned_cols=73 Identities=16% Similarity=0.212 Sum_probs=68.0
Q ss_pred CCeEEEeCCCCCC------cHHHHHHHHccCCCeEEEEEeeCCCCCCcccEEEEEeecHHHHHHHHHHhCCceeCCe-ee
Q 028130 49 GNNLYVTGLSTRV------TNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGR-LI 121 (213)
Q Consensus 49 ~~~v~V~nLp~~~------t~~~L~~~F~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~-~i 121 (213)
+++|||+|||..+ ++++|+++|++||+|..|.|+ ..+++++|||||+|.+.++|++||+.|||..|+|+ +|
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l 78 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTF 78 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeE
Confidence 3689999999999 789999999999999999987 45889999999999999999999999999999999 88
Q ss_pred EE
Q 028130 122 TV 123 (213)
Q Consensus 122 ~V 123 (213)
.|
T Consensus 79 ~V 80 (81)
T 2krb_A 79 RV 80 (81)
T ss_dssp CC
T ss_pred Ee
Confidence 76
No 133
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.80 E-value=5e-19 Score=123.70 Aligned_cols=79 Identities=23% Similarity=0.350 Sum_probs=70.3
Q ss_pred CCCCeEEEeCCCCCCcHHHHHHHHccCCCeEEEEEeeCCCCCCcccEEEEEeecHHHHHHHHHHhCCceeCCeeeEEEec
Q 028130 47 NPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLITVEKA 126 (213)
Q Consensus 47 ~~~~~v~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~a 126 (213)
...++|||+|||..+++++|+++|.+||.|..| +.+..++. ||||+|.+.++|++||+ ||+..|+|+.|.|.++
T Consensus 6 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a 79 (94)
T 2e5g_A 6 SGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPR 79 (94)
T ss_dssp TTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCBCS
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEEC
Confidence 456799999999999999999999999999987 55555554 99999999999999999 9999999999999988
Q ss_pred ccCCC
Q 028130 127 KRSRG 131 (213)
Q Consensus 127 ~~~~~ 131 (213)
..+..
T Consensus 80 ~~~~~ 84 (94)
T 2e5g_A 80 EQKEF 84 (94)
T ss_dssp CCSCC
T ss_pred CcCCC
Confidence 76543
No 134
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=2.9e-19 Score=129.14 Aligned_cols=81 Identities=20% Similarity=0.251 Sum_probs=72.0
Q ss_pred CCCCCeEEEeCCCCC-CcHHHHHHHHccCCCeEEEEEeeCCCCCCcccEEEEEeecHHHHHHHHHHhCC--ceeCCeeeE
Q 028130 46 ANPGNNLYVTGLSTR-VTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNR--SVLEGRLIT 122 (213)
Q Consensus 46 ~~~~~~v~V~nLp~~-~t~~~L~~~F~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~Ai~~l~g--~~i~g~~i~ 122 (213)
..+.++|||+|||++ +++++|+++|++||+|..|.|+.. +|||||+|++.++|++||+.||+ ..|.|+.|.
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~ 95 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRM------KSQAFIEMETREDAMAMVDHCLKKALWFQGRCVK 95 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEecC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 457889999999998 999999999999999999999743 48999999999999999998864 569999999
Q ss_pred EEecccCCCC
Q 028130 123 VEKAKRSRGR 132 (213)
Q Consensus 123 V~~a~~~~~~ 132 (213)
|++++.+...
T Consensus 96 V~~a~~~~~~ 105 (112)
T 1x4f_A 96 VDLSEKYKKL 105 (112)
T ss_dssp EEEECSCSSS
T ss_pred EEECcccccc
Confidence 9999876543
No 135
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.80 E-value=2.9e-19 Score=129.36 Aligned_cols=82 Identities=21% Similarity=0.335 Sum_probs=75.0
Q ss_pred CCCCCeEEEeCCCCCCcHHHHHHHHccCCCeEEEEEeeCCCCCCcccEEEEEeecHHHHHHHHHHhCCceeCCeeeEEEe
Q 028130 46 ANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLITVEK 125 (213)
Q Consensus 46 ~~~~~~v~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~ 125 (213)
.+++++|||+|||..+++++|+++|.+||.|..|.|+.+ +..+|||||+|.+.++|++||+.|||..|+|+.|.|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 81 (115)
T 3lqv_A 5 PEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLY 81 (115)
T ss_dssp TTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 456789999999999999999999999999999999864 44579999999999999999999999999999999999
Q ss_pred cccCC
Q 028130 126 AKRSR 130 (213)
Q Consensus 126 a~~~~ 130 (213)
+.+..
T Consensus 82 a~~~~ 86 (115)
T 3lqv_A 82 YNANR 86 (115)
T ss_dssp CCHHH
T ss_pred ecCCh
Confidence 97643
No 136
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.80 E-value=5.4e-20 Score=131.86 Aligned_cols=85 Identities=16% Similarity=0.235 Sum_probs=78.2
Q ss_pred CCCCCCCCeEEEeCCCCCCcHHHHHHHHccCCC---eEEEEEeeCCCCCCcccEEEEEeecHHHHHHHHHHhCCceeCCe
Q 028130 43 PDAANPGNNLYVTGLSTRVTNADLEKFFGGEGK---VTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGR 119 (213)
Q Consensus 43 ~~~~~~~~~v~V~nLp~~~t~~~L~~~F~~~G~---i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~ 119 (213)
.+.....++|||+|||+.+++++|+++|..||. |..|.|+.++. +.++|||||+|.+.++|++||+ ||+..|+|+
T Consensus 5 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr 82 (107)
T 2lmi_A 5 EEEVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRMYMGQR 82 (107)
T ss_dssp CCCCSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTCCSSSS
T ss_pred cCCCCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCcceeCCe
Confidence 445677889999999999999999999999988 89999999886 9999999999999999999999 999999999
Q ss_pred eeEEEecccC
Q 028130 120 LITVEKAKRS 129 (213)
Q Consensus 120 ~i~V~~a~~~ 129 (213)
.|.|.++...
T Consensus 83 ~i~V~~a~~~ 92 (107)
T 2lmi_A 83 YVEVYEINNE 92 (107)
T ss_dssp CCCCEECCHH
T ss_pred EEEEEECCHH
Confidence 9999998653
No 137
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=1.4e-18 Score=122.09 Aligned_cols=80 Identities=30% Similarity=0.378 Sum_probs=71.7
Q ss_pred CCCCCCeEEEeCCCCCCcHHHHHHHHccCCCeEEEEEeeCCCCCCcccEEEEEeecHHHHHHHHHHhCCceeCCeeeEEE
Q 028130 45 AANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLITVE 124 (213)
Q Consensus 45 ~~~~~~~v~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~ 124 (213)
...+.++|||+|| .+++++|+++|.+||+|..|.|.. .+|||||+|.+.++|++||+.||+..|+|+.|.|.
T Consensus 11 ~~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~ 82 (97)
T 1x5p_A 11 APRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDP------PRNCAFVTYEKMESADQAVAELNGTQVESVQLKVN 82 (97)
T ss_dssp CCCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEE
T ss_pred CCCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEecC------CCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 3456789999996 899999999999999999999853 45899999999999999999999999999999999
Q ss_pred ecccCCCC
Q 028130 125 KAKRSRGR 132 (213)
Q Consensus 125 ~a~~~~~~ 132 (213)
++..+...
T Consensus 83 ~a~~~~~~ 90 (97)
T 1x5p_A 83 IARKQPML 90 (97)
T ss_dssp CCSSCCCC
T ss_pred ECCCCCCC
Confidence 99877543
No 138
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.79 E-value=3.7e-19 Score=124.65 Aligned_cols=81 Identities=20% Similarity=0.215 Sum_probs=73.1
Q ss_pred CCCCCeEEEeCCCCCCcHHHHHHHHccCCCeEEE-EEeeCCCCCCcccEEEEEeecHHHHHHHHHHhCCceeCCeeeEEE
Q 028130 46 ANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTEC-HLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLITVE 124 (213)
Q Consensus 46 ~~~~~~v~V~nLp~~~t~~~L~~~F~~~G~i~~~-~i~~~~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~ 124 (213)
....++|||+|||..+++++|+++|.+||.|..| .|+.++.++ .|||+|.+.++|++||+.|||..|+|+.|.|.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~----~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~ 87 (96)
T 2e44_A 12 RQRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETA----VVNVTYSSKDQARQALDKLNGFQLENFTLKVA 87 (96)
T ss_dssp CCSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSE----EEEEEESSHHHHHHHHHHHTTCBCSSCBCEEE
T ss_pred CCCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCC----EEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 4567899999999999999999999999999999 577766543 49999999999999999999999999999999
Q ss_pred ecccCC
Q 028130 125 KAKRSR 130 (213)
Q Consensus 125 ~a~~~~ 130 (213)
++.++.
T Consensus 88 ~a~~~~ 93 (96)
T 2e44_A 88 YIPDEM 93 (96)
T ss_dssp ECCCCC
T ss_pred EcCccc
Confidence 998763
No 139
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.79 E-value=4.8e-19 Score=141.54 Aligned_cols=84 Identities=29% Similarity=0.452 Sum_probs=77.9
Q ss_pred CCCCCeEEEeCCCCCCcHHHHHHHHccCCCeEEEEEeeCCCCCCcccEEEEEeecHHHHHHHHHHhCCceeCCeeeEEEe
Q 028130 46 ANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLITVEK 125 (213)
Q Consensus 46 ~~~~~~v~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~ 125 (213)
..+.++|||+|||..+++++|+++|++||+|+.|.|+.++.++.++|||||+|.+.++|++||+.||+..+.|+.|.|.+
T Consensus 12 ~~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~ 91 (213)
T 4f02_A 12 SYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMW 91 (213)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccccccc
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cccC
Q 028130 126 AKRS 129 (213)
Q Consensus 126 a~~~ 129 (213)
+...
T Consensus 92 ~~~~ 95 (213)
T 4f02_A 92 SQRD 95 (213)
T ss_dssp CCCC
T ss_pred cccc
Confidence 7654
No 140
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.79 E-value=5.5e-20 Score=123.06 Aligned_cols=75 Identities=24% Similarity=0.442 Sum_probs=71.6
Q ss_pred eEEEeCCCCCCcHHHHHHHHccCCCeEEEEEeeCCCCCCcccEEEEEeecHHHHHHHHHHhCCceeCCeeeEEEec
Q 028130 51 NLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLITVEKA 126 (213)
Q Consensus 51 ~v~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~a 126 (213)
+|||+|||..+++++|+++|++||+|..|.|+.++.++.++|||||+|.+.++|++||+ +++..|+|+.|.|.+|
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeECCEEEEEEEC
Confidence 69999999999999999999999999999999998899999999999999999999999 5899999999999875
No 141
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.79 E-value=1.2e-19 Score=128.59 Aligned_cols=84 Identities=23% Similarity=0.450 Sum_probs=77.9
Q ss_pred CCCCCCCeEEEeCCCCCCcHHHHHHHHccCCCeEEEEEeeCCCCCCcccEEEEEeecHHHHHHHHHHhCCceeCCeeeEE
Q 028130 44 DAANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLITV 123 (213)
Q Consensus 44 ~~~~~~~~v~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V 123 (213)
+...+.++|||+|||..+++++|+++|.+||.|..|.|+.+. +++++|||||+|.+.++|++||+ ++..|+|..|.|
T Consensus 4 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v 80 (102)
T 2xs2_A 4 EGKIMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKL 80 (102)
T ss_dssp CCEEEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEE
Confidence 344567899999999999999999999999999999999998 99999999999999999999999 999999999999
Q ss_pred EecccCC
Q 028130 124 EKAKRSR 130 (213)
Q Consensus 124 ~~a~~~~ 130 (213)
.++..+.
T Consensus 81 ~~a~~~~ 87 (102)
T 2xs2_A 81 GPAIRKQ 87 (102)
T ss_dssp EEEEECC
T ss_pred EECCcCc
Confidence 9988664
No 142
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.79 E-value=6.2e-20 Score=137.73 Aligned_cols=85 Identities=21% Similarity=0.264 Sum_probs=74.5
Q ss_pred CCCCCCCCeEEEeCCCCCCcHHHHHHHHccCCCeEEEEEeeCCCCCCcccEEEEEeecHHHHHHHHHHhCCceeCCeeeE
Q 028130 43 PDAANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLIT 122 (213)
Q Consensus 43 ~~~~~~~~~v~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~ 122 (213)
+......++|||+|||+++|+++|+++|++|| |+.|.|+.++. ++++|||||+|++.++|++|| .+|+..|+|+.|.
T Consensus 40 ~~~~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~ 116 (139)
T 2hgn_A 40 TVQSTTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPD-GRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIE 116 (139)
T ss_dssp -----CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSS-SCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCC
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCC-CCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEE
Confidence 34556778999999999999999999999999 67999999875 999999999999999999999 6999999999999
Q ss_pred EEecccCC
Q 028130 123 VEKAKRSR 130 (213)
Q Consensus 123 V~~a~~~~ 130 (213)
|.++....
T Consensus 117 V~~a~~~~ 124 (139)
T 2hgn_A 117 LFLNSTTG 124 (139)
T ss_dssp CEECCCSC
T ss_pred EEECCCCC
Confidence 99987654
No 143
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.79 E-value=1.6e-18 Score=131.75 Aligned_cols=84 Identities=23% Similarity=0.364 Sum_probs=79.3
Q ss_pred CCCCCCeEEEeCCCCCCcHHHHHHHHccCCCeEEEEEeeCCCCCCcccEEEEEeecHHHHHHHHHHhCCceeCCeeeEEE
Q 028130 45 AANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLITVE 124 (213)
Q Consensus 45 ~~~~~~~v~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~ 124 (213)
...+.++|||+|||..+++++|+++|++||.|..+.++.+..++.++|||||+|.+.++|++||..|||..|+|+.|.|.
T Consensus 83 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 162 (166)
T 3md3_A 83 SSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRIN 162 (166)
T ss_dssp CCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEE
Confidence 34567899999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred eccc
Q 028130 125 KAKR 128 (213)
Q Consensus 125 ~a~~ 128 (213)
||+.
T Consensus 163 ~a~~ 166 (166)
T 3md3_A 163 WAAK 166 (166)
T ss_dssp ESCC
T ss_pred ecCC
Confidence 9863
No 144
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=4.7e-19 Score=128.27 Aligned_cols=83 Identities=18% Similarity=0.223 Sum_probs=73.1
Q ss_pred CCCCCeEEE--eCCCCCCcHHHHHHHHccCCCeEEEEEeeCCCCCCcccEEEEEeecHHHHHHHHHHhCCcee-----CC
Q 028130 46 ANPGNNLYV--TGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVL-----EG 118 (213)
Q Consensus 46 ~~~~~~v~V--~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i-----~g 118 (213)
..+..+||| +||+..+++++|+++|++||+|..|.|+.+ +|||||+|.+.++|++||+.|||.+| .|
T Consensus 22 ~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~------rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g 95 (114)
T 2cq2_A 22 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN------KPYSFARYRTTEESKRAYVTLNGKEVVDDLGQK 95 (114)
T ss_dssp SSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTT------CSCEEEEESSHHHHHHHHHHTTTCEEECTTSCE
T ss_pred CCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHhCCCEEccccCCC
Confidence 356789999 779999999999999999999999988642 48999999999999999999999998 68
Q ss_pred eeeEEEecccCCCCCC
Q 028130 119 RLITVEKAKRSRGRTP 134 (213)
Q Consensus 119 ~~i~V~~a~~~~~~~~ 134 (213)
.+|.|.+++..+...|
T Consensus 96 ~~l~v~~a~~~p~~~~ 111 (114)
T 2cq2_A 96 ITLYLNFVEKVQWSGP 111 (114)
T ss_dssp EECEEEEESCCCCSSC
T ss_pred cEEEEEecccCcccCC
Confidence 8999999987765444
No 145
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=6.1e-19 Score=127.28 Aligned_cols=77 Identities=16% Similarity=0.092 Sum_probs=71.0
Q ss_pred CCCeEEEeCCCCCCcHHHHHHHHccCCCeEEEEEeeCCCCCCcccEEEEEeecHHHHHHHHHHhCCceeCCeeeEEEecc
Q 028130 48 PGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLITVEKAK 127 (213)
Q Consensus 48 ~~~~v~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~a~ 127 (213)
..++|||+|||..+++++|+++|.+||.|..|.|+. .+|||||+|.+.++|++||+.|||..|+|+.|.|+|+.
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 82 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAP 82 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 467999999999999999999999999999998874 34799999999999999999999999999999999997
Q ss_pred cCC
Q 028130 128 RSR 130 (213)
Q Consensus 128 ~~~ 130 (213)
...
T Consensus 83 ~~~ 85 (111)
T 1whx_A 83 IGV 85 (111)
T ss_dssp TTT
T ss_pred CCc
Confidence 654
No 146
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.78 E-value=1.3e-19 Score=136.28 Aligned_cols=86 Identities=24% Similarity=0.360 Sum_probs=74.5
Q ss_pred CCCCCCeEEEeCCCCCCcHHHHHHHHccCCCeEEE------EEeeCCCCCCcccEEEEEeecHHHHHHHHHHhCCceeCC
Q 028130 45 AANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTEC------HLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEG 118 (213)
Q Consensus 45 ~~~~~~~v~V~nLp~~~t~~~L~~~F~~~G~i~~~------~i~~~~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g 118 (213)
...+.++|||+|||..+++++|+++|.+||.|..| .+.. ..++.++|||||+|.+.++|++||..|||..|.|
T Consensus 41 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~-~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g 119 (143)
T 3egn_A 41 PGEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRL-MKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFG 119 (143)
T ss_dssp CCSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEE-EEETTTEEEEEEECSSHHHHHHHHHHHTTBEETT
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEe-ccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCC
Confidence 35677899999999999999999999999998764 1111 2378889999999999999999999999999999
Q ss_pred eeeEEEecccCCC
Q 028130 119 RLITVEKAKRSRG 131 (213)
Q Consensus 119 ~~i~V~~a~~~~~ 131 (213)
+.|.|++++....
T Consensus 120 ~~l~V~~a~~~~~ 132 (143)
T 3egn_A 120 KPMVVQFARSARP 132 (143)
T ss_dssp EECEEEECCCSCC
T ss_pred cEEEEEECCCCCC
Confidence 9999999987653
No 147
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.78 E-value=1.6e-18 Score=137.71 Aligned_cols=88 Identities=23% Similarity=0.394 Sum_probs=82.1
Q ss_pred CCCCeEEEeCCCCCCcHHHHHHHHccCCCeEEEEEeeCCCCCCcccEEEEEeecHHHHHHHHHHhCCceeCCeeeEEEec
Q 028130 47 NPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLITVEKA 126 (213)
Q Consensus 47 ~~~~~v~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~a 126 (213)
...++|||+|||..+++++|+++|++||.|+.|.|+.+..++.++|||||+|.+.++|++||+.|||..|+|+.|.|.++
T Consensus 123 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a 202 (216)
T 2qfj_A 123 RAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 202 (216)
T ss_dssp TTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEEC
T ss_pred CCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEe
Confidence 45689999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred ccCCCCCC
Q 028130 127 KRSRGRTP 134 (213)
Q Consensus 127 ~~~~~~~~ 134 (213)
.......+
T Consensus 203 ~~~~~~~~ 210 (216)
T 2qfj_A 203 VTPPMPLL 210 (216)
T ss_dssp SSCSSTTS
T ss_pred cCCCCCCC
Confidence 88754433
No 148
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.78 E-value=3.6e-18 Score=125.58 Aligned_cols=79 Identities=22% Similarity=0.216 Sum_probs=69.0
Q ss_pred CCCCCe--EEEeCCCCCCcHHHHHHHHccCCCeEEEEEeeCCCCCCcccE-EEEEeecHHHHHHHHHHhCCceeCC--ee
Q 028130 46 ANPGNN--LYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGF-AFVTMETVEGADRCIKYLNRSVLEG--RL 120 (213)
Q Consensus 46 ~~~~~~--v~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~t~~~~g~-afV~f~~~~~a~~Ai~~l~g~~i~g--~~ 120 (213)
.+++.+ |||+||++.+++++|+++|++||+|+.|.|+.. + || |||+|.+.++|++||+.|||..|.| ..
T Consensus 20 ~~ps~vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~--~----Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~ 93 (124)
T 2e5i_A 20 SGGNKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR--N----GIQAMVEFESVLCAQKAKAALNGADIYAGCCT 93 (124)
T ss_dssp CCCCSEEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES--S----SEEEEEEESSHHHHHHHHHHHTTCCCBTTBSE
T ss_pred CCCCcEEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC--C----CCEEEEEECCHHHHHHHHHHhCCCEecCCCeE
Confidence 344544 679999999999999999999999999998652 1 76 9999999999999999999999987 68
Q ss_pred eEEEecccCC
Q 028130 121 ITVEKAKRSR 130 (213)
Q Consensus 121 i~V~~a~~~~ 130 (213)
|.|++|+.+.
T Consensus 94 l~V~~Ak~~~ 103 (124)
T 2e5i_A 94 LKIEYARPTR 103 (124)
T ss_dssp EEEECCSCSC
T ss_pred EEEEEecCCc
Confidence 9999998764
No 149
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.78 E-value=1.1e-18 Score=132.10 Aligned_cols=84 Identities=25% Similarity=0.392 Sum_probs=76.5
Q ss_pred CCCCCCCCCeEEEeCCCCCCcHHHHHHHHccCCCeEEEEEeeCCCCCCcccEEEEEeecHHHHHHHHHHhCCceeCCeee
Q 028130 42 SPDAANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLI 121 (213)
Q Consensus 42 ~~~~~~~~~~v~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i 121 (213)
......+.++|||+|||+.+++++|+++|++||.|..|.|+.+ ++|||||+|.+.++|+.||..|||..|+|+.|
T Consensus 66 ~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 140 (150)
T 2i2y_A 66 HRDSCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRV 140 (150)
T ss_dssp CSSSSTTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCC
T ss_pred cccCCCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEE
Confidence 3445567899999999999999999999999999999999875 45899999999999999999999999999999
Q ss_pred EEEecccCC
Q 028130 122 TVEKAKRSR 130 (213)
Q Consensus 122 ~V~~a~~~~ 130 (213)
.|.+++++.
T Consensus 141 ~v~~a~~~~ 149 (150)
T 2i2y_A 141 RVELSNGEK 149 (150)
T ss_dssp EEEECCCCC
T ss_pred EEEEcCCCC
Confidence 999997753
No 150
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.77 E-value=1.9e-18 Score=131.87 Aligned_cols=83 Identities=28% Similarity=0.448 Sum_probs=79.1
Q ss_pred CCCeEEEeCCCCCCcHHHHHHHHccCCCeEEEEEeeCCCCCCcccEEEEEeecHHHHHHHHHHhCCceeCCeeeEEEecc
Q 028130 48 PGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLITVEKAK 127 (213)
Q Consensus 48 ~~~~v~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~a~ 127 (213)
+.++|||+|||..+++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|++||+.|+|..|.|..|.|.++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 56899999999999999999999999999999999998899999999999999999999999999999999999999987
Q ss_pred cCC
Q 028130 128 RSR 130 (213)
Q Consensus 128 ~~~ 130 (213)
+..
T Consensus 82 ~~~ 84 (168)
T 1b7f_A 82 PGG 84 (168)
T ss_dssp CCS
T ss_pred CCc
Confidence 654
No 151
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.77 E-value=2.4e-18 Score=130.93 Aligned_cols=82 Identities=32% Similarity=0.496 Sum_probs=78.2
Q ss_pred CCeEEEeCCCCCCcHHHHHHHHccCCCeEEEEEeeCCCCCCcccEEEEEeecHHHHHHHHHHhCCceeCCeeeEEEeccc
Q 028130 49 GNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLITVEKAKR 128 (213)
Q Consensus 49 ~~~v~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~a~~ 128 (213)
.++|||+|||..+++++|+++|++||+|..|.|+.++.++.++|||||+|.+.++|++||+.|||..|.|..|.|.++.+
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 57999999999999999999999999999999999988999999999999999999999999999999999999999875
Q ss_pred CC
Q 028130 129 SR 130 (213)
Q Consensus 129 ~~ 130 (213)
..
T Consensus 82 ~~ 83 (167)
T 1fxl_A 82 SS 83 (167)
T ss_dssp CC
T ss_pred Cc
Confidence 53
No 152
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.77 E-value=4.1e-18 Score=133.52 Aligned_cols=87 Identities=22% Similarity=0.363 Sum_probs=81.7
Q ss_pred CCCCCCCeEEEeCCCCCCcHHHHHHHHccCCCeEEEEEeeCCCCCCcccEEEEEeecHHHHHHHHHHhCCceeCCeeeEE
Q 028130 44 DAANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLITV 123 (213)
Q Consensus 44 ~~~~~~~~v~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V 123 (213)
....+.++|||+|||..+++++|+++|.+||.|..|.|+.+..++.++|||||+|.+.++|++||+.|||..|+|+.|.|
T Consensus 109 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 188 (198)
T 2yh0_A 109 VVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLV 188 (198)
T ss_dssp CSSCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 33467899999999999999999999999999999999999889999999999999999999999999999999999999
Q ss_pred EecccCC
Q 028130 124 EKAKRSR 130 (213)
Q Consensus 124 ~~a~~~~ 130 (213)
.++.++.
T Consensus 189 ~~a~~~~ 195 (198)
T 2yh0_A 189 QRASVGA 195 (198)
T ss_dssp EESCCCC
T ss_pred EECCCCC
Confidence 9998764
No 153
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.77 E-value=1.5e-18 Score=119.85 Aligned_cols=76 Identities=16% Similarity=0.245 Sum_probs=70.0
Q ss_pred CCCeEEEeCCCCCCcHHHHHHHHccCCCeEEEEEeeCCCCCCcccEEEEEeecHHHHHHHHHHhCCceeCCeeeEEEecc
Q 028130 48 PGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLITVEKAK 127 (213)
Q Consensus 48 ~~~~v~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~a~ 127 (213)
..++|||+|||..+++++|+++|.+| .|..|.|. +++|||||+|.+.++|++||+.|||..|+|+.|.|+++.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 76 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQP 76 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcC
Confidence 46799999999999999999999999 99999885 466999999999999999999999999999999999986
Q ss_pred cCC
Q 028130 128 RSR 130 (213)
Q Consensus 128 ~~~ 130 (213)
...
T Consensus 77 ~~~ 79 (88)
T 1wg1_A 77 TDA 79 (88)
T ss_dssp CCC
T ss_pred CCc
Confidence 653
No 154
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.77 E-value=5.9e-19 Score=130.21 Aligned_cols=82 Identities=23% Similarity=0.361 Sum_probs=73.6
Q ss_pred CCCCCCCeEEEeCCCCCCcHHHHHHHHccCCCeE--EEEEeeCCCCCCcccEEEEEeecHHHHHHHHHHhCCceeCCeee
Q 028130 44 DAANPGNNLYVTGLSTRVTNADLEKFFGGEGKVT--ECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLI 121 (213)
Q Consensus 44 ~~~~~~~~v~V~nLp~~~t~~~L~~~F~~~G~i~--~~~i~~~~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i 121 (213)
......++|||+|||+.+|+++|+++|++| .|+ .|.|+.++. ++++|||||+|.+.++|++||+ +++..|+|+.|
T Consensus 37 ~~~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~-~~~~~l~gR~I 113 (126)
T 2hgm_A 37 ADSANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALG-KHKERIGHRYI 113 (126)
T ss_dssp TCSSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHT-TTTCCBTTBCC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHH-HCCCEECCEEE
Confidence 344567899999999999999999999999 676 899998886 9999999999999999999999 57899999999
Q ss_pred EEEeccc
Q 028130 122 TVEKAKR 128 (213)
Q Consensus 122 ~V~~a~~ 128 (213)
.|..+..
T Consensus 114 ~V~~a~~ 120 (126)
T 2hgm_A 114 EVFKSSQ 120 (126)
T ss_dssp CCEEECH
T ss_pred EEEECCH
Confidence 9988754
No 155
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.77 E-value=1.6e-18 Score=135.62 Aligned_cols=89 Identities=31% Similarity=0.558 Sum_probs=79.4
Q ss_pred CCCCCCCCCCeEEEeCCCCCCcHHHHHHHHccCCCeEEEEEeeCCCCCCcccEEEEEeecHHHHHHHHHHhCCceeCCee
Q 028130 41 RSPDAANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRL 120 (213)
Q Consensus 41 ~~~~~~~~~~~v~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~ 120 (213)
..+....+.++|||+|||..+++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|++||+ +++..|.|..
T Consensus 5 ~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~-~~~~~~~g~~ 83 (196)
T 1l3k_A 5 ESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN-ARPHKVDGRV 83 (196)
T ss_dssp ---CCCGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHH-TCSCEETTEE
T ss_pred cCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHh-cCCCEECCEE
Confidence 345566788899999999999999999999999999999999999899999999999999999999998 5999999999
Q ss_pred eEEEecccCC
Q 028130 121 ITVEKAKRSR 130 (213)
Q Consensus 121 i~V~~a~~~~ 130 (213)
|.|.++....
T Consensus 84 l~v~~~~~~~ 93 (196)
T 1l3k_A 84 VEPKRAVSRE 93 (196)
T ss_dssp CEEEECCC--
T ss_pred eeeecccCcc
Confidence 9999987653
No 156
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.76 E-value=3.6e-18 Score=133.62 Aligned_cols=87 Identities=23% Similarity=0.382 Sum_probs=76.0
Q ss_pred CCCCCCeEEEeCCCCCCcHHHHHHHHccCCCeEEEEEeeCCCCCCcccEEEEEeecHHHHHHHHHHhCCceeCCeeeEEE
Q 028130 45 AANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLITVE 124 (213)
Q Consensus 45 ~~~~~~~v~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~ 124 (213)
...+.++|||+|||..+++++|+++|++||.|..|.|+.+..++.++|||||+|.+.++|++||.. ++..|+|+.|.|.
T Consensus 100 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G~~i~v~ 178 (196)
T 1l3k_A 100 AHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCEVR 178 (196)
T ss_dssp ---CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEETTEECEEE
T ss_pred cCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-CCcEECCEEEEEE
Confidence 345668999999999999999999999999999999999988999999999999999999999985 8999999999999
Q ss_pred ecccCCCC
Q 028130 125 KAKRSRGR 132 (213)
Q Consensus 125 ~a~~~~~~ 132 (213)
++.++...
T Consensus 179 ~a~~k~~~ 186 (196)
T 1l3k_A 179 KALSKQEM 186 (196)
T ss_dssp ECC-----
T ss_pred ecCChhHh
Confidence 99887643
No 157
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.76 E-value=5e-18 Score=130.18 Aligned_cols=80 Identities=24% Similarity=0.392 Sum_probs=76.8
Q ss_pred CCCCeEEEeCCCCCCcHHHHHHHHccCCCeEEEEEeeCCCCCCcccEEEEEeecHHHHHHHHHHhCCceeCCeeeEEEec
Q 028130 47 NPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLITVEKA 126 (213)
Q Consensus 47 ~~~~~v~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~a 126 (213)
...++|||+|||..+++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|++|++.|||..|+|+.|.|.+|
T Consensus 92 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 92 PGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 171 (172)
T ss_dssp TTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeC
Confidence 34789999999999999999999999999999999999889999999999999999999999999999999999999987
No 158
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=6.9e-19 Score=129.38 Aligned_cols=80 Identities=23% Similarity=0.314 Sum_probs=72.8
Q ss_pred CCCCeEEEeCCCCCCcHHHHHHHHccCCCe----EEEEEeeCCCCCCcccEEEEEeecHHHHHHHHHHhCCceeCCeeeE
Q 028130 47 NPGNNLYVTGLSTRVTNADLEKFFGGEGKV----TECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLIT 122 (213)
Q Consensus 47 ~~~~~v~V~nLp~~~t~~~L~~~F~~~G~i----~~~~i~~~~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~ 122 (213)
...++|||+|||+.+|+++|+++|++||.| ..|.|+.+. +++++|||||+|.+.++|++||+. |+..|+|+.|.
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~-~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~ 98 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYP-DGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIE 98 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECT-TSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECC-CCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEE
Confidence 567899999999999999999999999975 688888884 899999999999999999999995 99999999999
Q ss_pred EEeccc
Q 028130 123 VEKAKR 128 (213)
Q Consensus 123 V~~a~~ 128 (213)
|..+..
T Consensus 99 V~~a~~ 104 (123)
T 2dha_A 99 LFRSTA 104 (123)
T ss_dssp CEEECH
T ss_pred EEECCH
Confidence 988753
No 159
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.76 E-value=3.9e-18 Score=125.00 Aligned_cols=81 Identities=30% Similarity=0.370 Sum_probs=71.4
Q ss_pred CCCCCCCeEEEeCCCCCCcHHHHHHHHccCCCeEEEEEeeCCCCCCcccEEEEEeecHHHHHHHHHHhCCceeCCeeeEE
Q 028130 44 DAANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLITV 123 (213)
Q Consensus 44 ~~~~~~~~v~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V 123 (213)
....+.++|||+|| .+++++|+++|++||.|..|.|. .++|||||+|.+.++|++||+.|||..|+|+.|.|
T Consensus 34 ~~~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V 105 (121)
T 2bz2_A 34 RAPRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKV 105 (121)
T ss_dssp -CCCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEE
T ss_pred CCCCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 34467889999996 69999999999999999999886 24589999999999999999999999999999999
Q ss_pred EecccCCCC
Q 028130 124 EKAKRSRGR 132 (213)
Q Consensus 124 ~~a~~~~~~ 132 (213)
.+++.....
T Consensus 106 ~~a~~~~~~ 114 (121)
T 2bz2_A 106 NIARKQPML 114 (121)
T ss_dssp EECCSSCC-
T ss_pred EEeCCCCCC
Confidence 999877543
No 160
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=7.2e-18 Score=117.02 Aligned_cols=75 Identities=23% Similarity=0.265 Sum_probs=66.6
Q ss_pred CCCCe-EEEeCCCCCCcHHH----HHHHHccC-CCeEEEEEeeCCCCCCcccEEEEEeecHHHHHHHHHHhCCceeCCee
Q 028130 47 NPGNN-LYVTGLSTRVTNAD----LEKFFGGE-GKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRL 120 (213)
Q Consensus 47 ~~~~~-v~V~nLp~~~t~~~----L~~~F~~~-G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~ 120 (213)
+|..+ |||.|||+.+++++ |+++|++| |+|..| ++ |+|||+|.+.++|+.||+.|||..|.|++
T Consensus 6 ~p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~ 75 (96)
T 2diu_A 6 SGCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDVFGNR 75 (96)
T ss_dssp CCSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSC
T ss_pred CCcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCccCCce
Confidence 34555 99999999999987 55899999 599887 33 89999999999999999999999999999
Q ss_pred eEEEecccCCC
Q 028130 121 ITVEKAKRSRG 131 (213)
Q Consensus 121 i~V~~a~~~~~ 131 (213)
|.|++|+....
T Consensus 76 i~v~~A~~~sd 86 (96)
T 2diu_A 76 IIVSFTPKNRE 86 (96)
T ss_dssp CEEESSCCSCC
T ss_pred EEEEecCCCcc
Confidence 99999987764
No 161
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=2.4e-18 Score=124.58 Aligned_cols=79 Identities=14% Similarity=0.251 Sum_probs=68.2
Q ss_pred CCCCCeEEEeCCCCCCcHHHHHHHHccCCCeEEEEEeeCCCC---CCcccEEEEEeecHHHHHHHHHHhCCceeCCeeeE
Q 028130 46 ANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRT---RESCGFAFVTMETVEGADRCIKYLNRSVLEGRLIT 122 (213)
Q Consensus 46 ~~~~~~v~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~t---~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~ 122 (213)
....++|||+|||..+++++|+++|++||+|. +.++.+..+ ++++|||||+|.+.++|++||+.|+ .++|..|.
T Consensus 5 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~ 81 (114)
T 2dnl_A 5 SSGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYL 81 (114)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEE
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEE
Confidence 35578999999999999999999999999999 888877766 7899999999999999999999884 36777666
Q ss_pred EEecc
Q 028130 123 VEKAK 127 (213)
Q Consensus 123 V~~a~ 127 (213)
|..+.
T Consensus 82 ~~~~~ 86 (114)
T 2dnl_A 82 CVSSP 86 (114)
T ss_dssp EECCS
T ss_pred eccCC
Confidence 66544
No 162
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.75 E-value=4e-18 Score=130.67 Aligned_cols=80 Identities=18% Similarity=0.101 Sum_probs=71.0
Q ss_pred CCCCeEEEeCCCCCCcHHHHHHHHccCCCeEEEEEeeCCCCCCcccEEEEEeecHHHHHHHHHHhCCceeCC--eeeEEE
Q 028130 47 NPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEG--RLITVE 124 (213)
Q Consensus 47 ~~~~~v~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g--~~i~V~ 124 (213)
....+|||+||++.+++++|+++|++||+|+.|.|.... .+|||||+|++.++|++|++.|||..|.| +.|+|+
T Consensus 44 s~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~----~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~ 119 (164)
T 1sjr_A 44 SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN----NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRID 119 (164)
T ss_dssp CCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESS----SCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEE
T ss_pred CceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCC----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEE
Confidence 344578999999999999999999999999999986432 45899999999999999999999999965 999999
Q ss_pred ecccCC
Q 028130 125 KAKRSR 130 (213)
Q Consensus 125 ~a~~~~ 130 (213)
|++.+.
T Consensus 120 ~Ak~~~ 125 (164)
T 1sjr_A 120 FSKLTS 125 (164)
T ss_dssp ECSSSS
T ss_pred EecCCc
Confidence 998763
No 163
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.75 E-value=8.1e-18 Score=124.42 Aligned_cols=79 Identities=19% Similarity=0.159 Sum_probs=70.1
Q ss_pred CCCCeEEEeCCCCCCcHHHHHHHHccCCCeEEEEEeeCCCCCCcccE-EEEEeecHHHHHHHHHHhCCceeCC--eeeEE
Q 028130 47 NPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGF-AFVTMETVEGADRCIKYLNRSVLEG--RLITV 123 (213)
Q Consensus 47 ~~~~~v~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~t~~~~g~-afV~f~~~~~a~~Ai~~l~g~~i~g--~~i~V 123 (213)
..-..|||+||++.+|+++|+++|++||+|..|.|+... +|| |||+|.+.++|++||+.|||..|.| ..|+|
T Consensus 26 s~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~-----~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI 100 (130)
T 3zzy_A 26 SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN-----NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRI 100 (130)
T ss_dssp CSEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEET-----TEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEE
T ss_pred CceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCC-----CCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEE
Confidence 334467899999999999999999999999999887532 477 9999999999999999999999988 89999
Q ss_pred EecccCC
Q 028130 124 EKAKRSR 130 (213)
Q Consensus 124 ~~a~~~~ 130 (213)
+|++...
T Consensus 101 ~~ak~~~ 107 (130)
T 3zzy_A 101 DFSKLTS 107 (130)
T ss_dssp EECSCSS
T ss_pred EecCCCc
Confidence 9998764
No 164
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.74 E-value=4.6e-18 Score=124.56 Aligned_cols=78 Identities=13% Similarity=0.229 Sum_probs=71.3
Q ss_pred CeEEEeCC----CCCCcHHHHHHHHccCCCeEEEEEeeCCCCCCcccEEEEEeec----HHH----HHHHHH--HhCCce
Q 028130 50 NNLYVTGL----STRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMET----VEG----ADRCIK--YLNRSV 115 (213)
Q Consensus 50 ~~v~V~nL----p~~~t~~~L~~~F~~~G~i~~~~i~~~~~t~~~~g~afV~f~~----~~~----a~~Ai~--~l~g~~ 115 (213)
+.|||+|| |+.+++++|+++|+.||+|..|.++.|+.||.++|||||+|.+ .++ |.+||. .|+|..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 78999999 9999999999999999999999999999999999999999996 333 788888 789999
Q ss_pred eCCeeeEEEecc
Q 028130 116 LEGRLITVEKAK 127 (213)
Q Consensus 116 i~g~~i~V~~a~ 127 (213)
|+|..|.|.+..
T Consensus 83 I~Gr~irV~ln~ 94 (136)
T 2j8a_A 83 IMGFKFEVILNK 94 (136)
T ss_dssp ETTEEEEEEECC
T ss_pred ecCcEEEEEECc
Confidence 999999999854
No 165
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.74 E-value=8.5e-18 Score=116.56 Aligned_cols=79 Identities=22% Similarity=0.349 Sum_probs=62.8
Q ss_pred CCCCCCCCeEEEeCCCCCCcHHHHHHHHccCCCeEEEEEeeCCCCCCcccEEEEEeecHHHHHHHHHHhCCce--eCCee
Q 028130 43 PDAANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSV--LEGRL 120 (213)
Q Consensus 43 ~~~~~~~~~v~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~--i~g~~ 120 (213)
.....+.++|||+|||+.+++++|+++|++||.|..|.|+.+ ++|||||+|.+.++|++ |++.. +.|..
T Consensus 5 ~~~~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~----~~~~~~~~~g~~ 75 (89)
T 3d2w_A 5 HHHHHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQS----LCGEDLIIKGIS 75 (89)
T ss_dssp ------CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHH----HTTCEEEETTEE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHH----HcCCCcccCCEE
Confidence 345678899999999999999999999999999999999864 56999999999999983 55655 46999
Q ss_pred eEEEecccCC
Q 028130 121 ITVEKAKRSR 130 (213)
Q Consensus 121 i~V~~a~~~~ 130 (213)
|.|.++.++.
T Consensus 76 v~v~~a~~k~ 85 (89)
T 3d2w_A 76 VHISNAEPKH 85 (89)
T ss_dssp EEEEECC---
T ss_pred EEEEEcCCCC
Confidence 9999988664
No 166
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.74 E-value=1.9e-17 Score=126.33 Aligned_cols=80 Identities=33% Similarity=0.493 Sum_probs=76.2
Q ss_pred CCCCeEEEeCCCCCCcHHHHHHHHccCCCeEEEEEeeCCCCCCcccEEEEEeecHHHHHHHHHHhCCceeCC--eeeEEE
Q 028130 47 NPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEG--RLITVE 124 (213)
Q Consensus 47 ~~~~~v~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g--~~i~V~ 124 (213)
.+.++|||+|||..+++++|+++|++||.|..+.|+.+..++.++|||||+|.+.++|++|++.|||..|.| .+|.|.
T Consensus 87 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V~ 166 (168)
T 1b7f_A 87 IKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVR 166 (168)
T ss_dssp TTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEE
T ss_pred CCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEEE
Confidence 456899999999999999999999999999999999998899999999999999999999999999999988 999999
Q ss_pred ec
Q 028130 125 KA 126 (213)
Q Consensus 125 ~a 126 (213)
+|
T Consensus 167 ~A 168 (168)
T 1b7f_A 167 LA 168 (168)
T ss_dssp EC
T ss_pred eC
Confidence 86
No 167
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.74 E-value=8.3e-18 Score=134.32 Aligned_cols=81 Identities=30% Similarity=0.508 Sum_probs=74.6
Q ss_pred CCCeEEEeCCCCCCcHHHHHHHHccCCCeEEEEEeeCCCCCCcccEEEEEeecHHHHHHHHHHhCCceeCCeeeEEEecc
Q 028130 48 PGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLITVEKAK 127 (213)
Q Consensus 48 ~~~~v~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~a~ 127 (213)
...+|||+|||..+++++|+++|.+||.|+.|.|+.+. +.++|||||+|.+.++|++||+.|||..|+|+.|.|.+++
T Consensus 102 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~--~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~ 179 (213)
T 4f02_A 102 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 179 (213)
T ss_dssp CTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred ccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccC--CCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcC
Confidence 35689999999999999999999999999999999874 4478999999999999999999999999999999999997
Q ss_pred cCC
Q 028130 128 RSR 130 (213)
Q Consensus 128 ~~~ 130 (213)
++.
T Consensus 180 ~~~ 182 (213)
T 4f02_A 180 SRK 182 (213)
T ss_dssp CHH
T ss_pred CCc
Confidence 653
No 168
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.73 E-value=4e-18 Score=130.11 Aligned_cols=81 Identities=26% Similarity=0.487 Sum_probs=76.9
Q ss_pred CCCeEEEeCCCCCCcHHHHHHHHccCCCeEEEEEeeCCCCCCcccEEEEEeecHHHHHHHHHHhCCceeCCeeeEEEecc
Q 028130 48 PGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLITVEKAK 127 (213)
Q Consensus 48 ~~~~v~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~a~ 127 (213)
+..+|||+|||..+++++|+++|++||.|..|.|+.+..++.++|||||+|.+.++|++||+ +++..|+|+.|.|.++.
T Consensus 86 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a~ 164 (167)
T 2cjk_A 86 KTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRAE 164 (167)
T ss_dssp HCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEECC
T ss_pred CCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeecC
Confidence 45689999999999999999999999999999999998899999999999999999999998 99999999999999997
Q ss_pred cC
Q 028130 128 RS 129 (213)
Q Consensus 128 ~~ 129 (213)
++
T Consensus 165 pk 166 (167)
T 2cjk_A 165 PR 166 (167)
T ss_dssp CC
T ss_pred CC
Confidence 65
No 169
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.73 E-value=1.7e-17 Score=132.22 Aligned_cols=79 Identities=24% Similarity=0.296 Sum_probs=72.7
Q ss_pred CCCCeEEEeCCC-CCCcHHHHHHHHccCCCeEEEEEeeCCCCCCcccEEEEEeecHHHHHHHHHHhCCceeCCeeeEEEe
Q 028130 47 NPGNNLYVTGLS-TRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLITVEK 125 (213)
Q Consensus 47 ~~~~~v~V~nLp-~~~t~~~L~~~F~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~ 125 (213)
.++++|||+||| ..+++++|.++|++||.|..|.|+.+. +|||||+|.+.++|+.||+.|||..|.|+.|.|.+
T Consensus 2 ~~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~~-----~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~ 76 (205)
T 3tyt_A 2 ADSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSK-----PGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCV 76 (205)
T ss_dssp CCCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTTS-----TTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEE
Confidence 467899999999 899999999999999999999998653 58999999999999999999999999999999999
Q ss_pred cccCC
Q 028130 126 AKRSR 130 (213)
Q Consensus 126 a~~~~ 130 (213)
++.+.
T Consensus 77 s~~~~ 81 (205)
T 3tyt_A 77 SKQPA 81 (205)
T ss_dssp CSCSC
T ss_pred ccCCc
Confidence 87553
No 170
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=5.5e-18 Score=116.86 Aligned_cols=78 Identities=19% Similarity=0.310 Sum_probs=66.4
Q ss_pred CCCCeEEEeCCCCCCcHHHHHHHHccCCCeEEEEEeeCCCCCCcccEEEEEeecHHHHHHHHHHhCCceeCCeeeEEEec
Q 028130 47 NPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLITVEKA 126 (213)
Q Consensus 47 ~~~~~v~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~a 126 (213)
.+.++|||+|||..+++++|+++|.+||.|..|.|+.+ ++|||||+|.+.++|++|+.. ...+.|..|.|.++
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~~~--~~~~~g~~l~v~~a 75 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCGE--DLIIKGISVHISNA 75 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHTTTC--EEEETTEEEEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHHhcC--CceeCCEEEEEEec
Confidence 46789999999999999999999999999999998764 568999999999999865331 34469999999998
Q ss_pred ccCCC
Q 028130 127 KRSRG 131 (213)
Q Consensus 127 ~~~~~ 131 (213)
.++..
T Consensus 76 ~~~~~ 80 (88)
T 1wf0_A 76 EPKHN 80 (88)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 87653
No 171
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.73 E-value=1.5e-17 Score=132.08 Aligned_cols=84 Identities=24% Similarity=0.330 Sum_probs=75.6
Q ss_pred CCCCCeEEEeCCCCCCcHHHHHHHHccCCCeEEEEEeeCCCCCCcccEEEEEeecHHHHHHHHHHhCCceeCCeeeEEEe
Q 028130 46 ANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLITVEK 125 (213)
Q Consensus 46 ~~~~~~v~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~ 125 (213)
..+.++|||+|||..+++++|+++|++||.|..|.|+.+..++.++|||||+|.+.++|++||+.||+..|.|+.|.|.+
T Consensus 25 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~ 104 (216)
T 2qfj_A 25 LAIMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGR 104 (216)
T ss_dssp HHHHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEEC
T ss_pred cCcCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEec
Confidence 34567999999999999999999999999999999999988999999999999999999999999999999999999988
Q ss_pred cccC
Q 028130 126 AKRS 129 (213)
Q Consensus 126 a~~~ 129 (213)
+...
T Consensus 105 ~~~~ 108 (216)
T 2qfj_A 105 PSNI 108 (216)
T ss_dssp CSCC
T ss_pred CCCc
Confidence 7654
No 172
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.73 E-value=2.5e-17 Score=125.18 Aligned_cols=80 Identities=23% Similarity=0.417 Sum_probs=74.2
Q ss_pred CeEEEeCCCCCCcHHHHHHHHccCCCeEEEEEeeCCCCCCcccEEEEEeecHHHHHHHHHHhCCceeCCeeeEEEecccC
Q 028130 50 NNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLITVEKAKRS 129 (213)
Q Consensus 50 ~~v~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~a~~~ 129 (213)
.+|||+|||..+++++|+++|++||.|..|.|+.++ +++++|||||+|.+.++|++||+.|||..|.|..|.|.++...
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~ 79 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDK-NNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQS 79 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCC-C-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECC-CCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCC
Confidence 489999999999999999999999999999999886 5778999999999999999999999999999999999998765
Q ss_pred C
Q 028130 130 R 130 (213)
Q Consensus 130 ~ 130 (213)
.
T Consensus 80 ~ 80 (166)
T 3md3_A 80 Q 80 (166)
T ss_dssp C
T ss_pred C
Confidence 4
No 173
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.72 E-value=3.2e-17 Score=124.66 Aligned_cols=80 Identities=33% Similarity=0.467 Sum_probs=74.8
Q ss_pred CCCCeEEEeCCCCCCcHHHHHHHHccCCCeEEEEEeeCCCCCCcccEEEEEeecHHHHHHHHHHhCCceeCCee--eEEE
Q 028130 47 NPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRL--ITVE 124 (213)
Q Consensus 47 ~~~~~v~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~--i~V~ 124 (213)
...++|||+|||..+++++|+++|++||.|..+.|+.+..++.++|||||+|.+.++|++|++.|||..|.|.. |.|.
T Consensus 86 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v~ 165 (167)
T 1fxl_A 86 IRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVK 165 (167)
T ss_dssp GTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEE
T ss_pred CCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccceEEE
Confidence 45678999999999999999999999999999999999889999999999999999999999999999999964 8888
Q ss_pred ec
Q 028130 125 KA 126 (213)
Q Consensus 125 ~a 126 (213)
||
T Consensus 166 ~A 167 (167)
T 1fxl_A 166 FA 167 (167)
T ss_dssp EC
T ss_pred eC
Confidence 75
No 174
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.72 E-value=1.2e-17 Score=114.68 Aligned_cols=73 Identities=19% Similarity=0.479 Sum_probs=66.9
Q ss_pred CCCCCeEEEeCCCCCCcHHHHHHHHccC----C-------CeEEEEEeeCCCCCCcccEEEEEeecHHHHHHHHHHhCCc
Q 028130 46 ANPGNNLYVTGLSTRVTNADLEKFFGGE----G-------KVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRS 114 (213)
Q Consensus 46 ~~~~~~v~V~nLp~~~t~~~L~~~F~~~----G-------~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~ 114 (213)
..+.++|||+|||..+++++|+++|.+| | .|..+.+..+ +|||||+|.+.++|++|| .|||.
T Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~-~l~g~ 75 (87)
T 2hzc_A 3 LGSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGI 75 (87)
T ss_dssp SGGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHG-GGTTC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHH-hcCCC
Confidence 3567899999999999999999999999 8 8999988765 489999999999999999 89999
Q ss_pred eeCCeeeEEEe
Q 028130 115 VLEGRLITVEK 125 (213)
Q Consensus 115 ~i~g~~i~V~~ 125 (213)
.|+|+.|.|+.
T Consensus 76 ~~~g~~l~V~r 86 (87)
T 2hzc_A 76 IFQGQSLKIRR 86 (87)
T ss_dssp EETTEECEEEC
T ss_pred EECCeEEEEeC
Confidence 99999999973
No 175
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.72 E-value=5.6e-17 Score=115.94 Aligned_cols=83 Identities=18% Similarity=0.237 Sum_probs=73.1
Q ss_pred CCCCCeEEEeCCCC-----CCcHHHHHHHHccCCCeEEEEEeeCCCC-CCcccEEEEEeecHHHHHHHHHHhCCceeCCe
Q 028130 46 ANPGNNLYVTGLST-----RVTNADLEKFFGGEGKVTECHLVTDPRT-RESCGFAFVTMETVEGADRCIKYLNRSVLEGR 119 (213)
Q Consensus 46 ~~~~~~v~V~nLp~-----~~t~~~L~~~F~~~G~i~~~~i~~~~~t-~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~ 119 (213)
..++.+|+|.||.. +.++++|+++|++||.|..|.|+.++.+ +.++|||||+|.+.++|++|++.|||..|+|+
T Consensus 5 ~~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr 84 (105)
T 2pe8_A 5 KCPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGR 84 (105)
T ss_dssp GSCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCc
Confidence 35678999999962 2368999999999999999999987654 67899999999999999999999999999999
Q ss_pred eeEEEeccc
Q 028130 120 LITVEKAKR 128 (213)
Q Consensus 120 ~i~V~~a~~ 128 (213)
.|.|.++..
T Consensus 85 ~i~v~~a~~ 93 (105)
T 2pe8_A 85 VVKACFYNL 93 (105)
T ss_dssp ECEEEECCH
T ss_pred EEEEEEcCH
Confidence 999999864
No 176
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.71 E-value=4.7e-17 Score=124.79 Aligned_cols=81 Identities=27% Similarity=0.416 Sum_probs=74.2
Q ss_pred CCCCCeEEEeCCCCCCcHHHHHHHHccCCCeEEEEEeeCCCCCCcccEEEEEeecHHHHHHHHHHhCCceeC---CeeeE
Q 028130 46 ANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLE---GRLIT 122 (213)
Q Consensus 46 ~~~~~~v~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~---g~~i~ 122 (213)
..+..+|||+|||..+++++|+++|++||.|..|.|+.+. ++.++|||||+|.+.++|++||+.|||..+. ++.|.
T Consensus 92 ~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~ 170 (175)
T 3nmr_A 92 AVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGP-DGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMV 170 (175)
T ss_dssp CGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCE
T ss_pred cCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECC-CCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeE
Confidence 3467799999999999999999999999999999999886 6889999999999999999999999998876 38999
Q ss_pred EEecc
Q 028130 123 VEKAK 127 (213)
Q Consensus 123 V~~a~ 127 (213)
|.||.
T Consensus 171 V~~ad 175 (175)
T 3nmr_A 171 VKFAD 175 (175)
T ss_dssp EEECC
T ss_pred EEecC
Confidence 99973
No 177
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.70 E-value=7e-17 Score=133.67 Aligned_cols=84 Identities=17% Similarity=0.366 Sum_probs=76.6
Q ss_pred CCCCCCCeEEEeCCCCCCcHHHHH----HHHccCCCeEEEEEeeCCCCCCcccEEEEEeecHHHHHHHHHHhCCceeCCe
Q 028130 44 DAANPGNNLYVTGLSTRVTNADLE----KFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGR 119 (213)
Q Consensus 44 ~~~~~~~~v~V~nLp~~~t~~~L~----~~F~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~ 119 (213)
....+.++|||+|||..+++++|+ ++|.+||.|..|.|+. +++++|||||+|.+.++|++||+.|||..|.|+
T Consensus 4 ~~~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 80 (282)
T 3pgw_A 4 PETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDK 80 (282)
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCc
Confidence 445778999999999999999966 8999999999998875 677889999999999999999999999999999
Q ss_pred eeEEEecccCC
Q 028130 120 LITVEKAKRSR 130 (213)
Q Consensus 120 ~i~V~~a~~~~ 130 (213)
.|.|.+++...
T Consensus 81 ~l~v~~a~~~~ 91 (282)
T 3pgw_A 81 PMRIQYAKTDS 91 (282)
T ss_pred EEEEEEeccCc
Confidence 99999987654
No 178
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.70 E-value=5.4e-17 Score=124.94 Aligned_cols=79 Identities=15% Similarity=0.305 Sum_probs=72.5
Q ss_pred CCCCCeEEEeCCCCCCcHHHHHHHHccCCCeEEEEEeeCCCCCCcccEEEEEeecHHHHHHHHHHhCCceeCCeeeEEEe
Q 028130 46 ANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLITVEK 125 (213)
Q Consensus 46 ~~~~~~v~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~ 125 (213)
..+.++|||+|||..+++++|+++|++||.|..+ ..++.++|||||+|.+.++|++||..|||..|+|+.|.|.+
T Consensus 96 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ 170 (175)
T 1fje_B 96 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYY 170 (175)
T ss_dssp TGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-----CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEE
T ss_pred cccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-----cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEe
Confidence 3467899999999999999999999999988766 44788899999999999999999999999999999999999
Q ss_pred cccC
Q 028130 126 AKRS 129 (213)
Q Consensus 126 a~~~ 129 (213)
+.++
T Consensus 171 a~~k 174 (175)
T 1fje_B 171 TGEK 174 (175)
T ss_dssp CSSC
T ss_pred cCCC
Confidence 9765
No 179
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.70 E-value=6.4e-17 Score=124.01 Aligned_cols=83 Identities=22% Similarity=0.280 Sum_probs=75.2
Q ss_pred CCCeEEEeCCCCCCcHHHHHHHHccCCCeEEEEEeeCCCCC--CcccEEEEEeecHHHHHHHHHHhCCceeC---CeeeE
Q 028130 48 PGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTR--ESCGFAFVTMETVEGADRCIKYLNRSVLE---GRLIT 122 (213)
Q Consensus 48 ~~~~v~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~t~--~~~g~afV~f~~~~~a~~Ai~~l~g~~i~---g~~i~ 122 (213)
+.++|||+|||..+++++|+++|.+||+|..|.|+.+..++ .++|||||+|.+.++|++||+.||+..+. +..|.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 46799999999999999999999999999999999998776 89999999999999999999999998876 57788
Q ss_pred EEecccCC
Q 028130 123 VEKAKRSR 130 (213)
Q Consensus 123 V~~a~~~~ 130 (213)
|.++....
T Consensus 82 ~~~~~~~~ 89 (175)
T 3nmr_A 82 MKPADSEK 89 (175)
T ss_dssp EEECGGGC
T ss_pred Eccccccc
Confidence 88876554
No 180
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.69 E-value=3.2e-17 Score=136.34 Aligned_cols=84 Identities=26% Similarity=0.408 Sum_probs=76.6
Q ss_pred CCCCCCeEEEeCCCCC-CcHHHHHHHHccCCCeEEEEEeeCCC-CCCcccEEEEEeecHHHHHHHHHHhCCceeCCeeeE
Q 028130 45 AANPGNNLYVTGLSTR-VTNADLEKFFGGEGKVTECHLVTDPR-TRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLIT 122 (213)
Q Consensus 45 ~~~~~~~v~V~nLp~~-~t~~~L~~~F~~~G~i~~~~i~~~~~-t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~ 122 (213)
...+.++|||+|||.. +++++|+++|.+||.|..|.|+.+.. |+.++|||||+|.+.++|++|| .|||..|+|+.|.
T Consensus 206 ~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~g~~i~ 284 (292)
T 2ghp_A 206 ATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMNRSLLGNREIS 284 (292)
T ss_dssp -CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGTTEEETTEEEE
T ss_pred cCCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-HhcCCEECCcEEE
Confidence 4567889999999999 99999999999999999999998775 5889999999999999999999 9999999999999
Q ss_pred EEecccC
Q 028130 123 VEKAKRS 129 (213)
Q Consensus 123 V~~a~~~ 129 (213)
|.|+.++
T Consensus 285 V~~a~~k 291 (292)
T 2ghp_A 285 VSLADKK 291 (292)
T ss_dssp EEECCCC
T ss_pred EEEecCC
Confidence 9999875
No 181
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.69 E-value=5.6e-17 Score=131.75 Aligned_cols=79 Identities=19% Similarity=0.299 Sum_probs=71.0
Q ss_pred CCCCCeEEEeCCCCCC---------cHHHHHHHHccCCCeEEEEEeeCCCCCCcccEEEEEeecHHHHHHHHHHhCCcee
Q 028130 46 ANPGNNLYVTGLSTRV---------TNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVL 116 (213)
Q Consensus 46 ~~~~~~v~V~nLp~~~---------t~~~L~~~F~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i 116 (213)
....++|||+||+..+ ++++|+++|++||+|+.|.|+.. +|||||+|.+.++|+.||++|+|..|
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~------kG~AFV~F~~~~~Ae~A~~am~g~~l 204 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVES------KNCGFVKFKYQANAEFAKEAMSNQTL 204 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHHHTTCCC
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECC------CCEEEEEeCCHHHHHHHHHHhCCCEE
Confidence 4568899999999998 79999999999999999999853 58999999999999999999999999
Q ss_pred ------------CCeeeEEEecccCC
Q 028130 117 ------------EGRLITVEKAKRSR 130 (213)
Q Consensus 117 ------------~g~~i~V~~a~~~~ 130 (213)
.|..|.|.||...+
T Consensus 205 ~~~~~~e~~~~~~gr~L~V~wA~~~p 230 (240)
T 3u1l_A 205 LLPSDKEWDDRREGTGLLVKWANEDP 230 (240)
T ss_dssp CCTTSTTGGGGGGSCCCEEEECC---
T ss_pred eccccccccccCCCCEEEEEEccCCC
Confidence 89999999998765
No 182
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.69 E-value=6.2e-17 Score=123.43 Aligned_cols=80 Identities=29% Similarity=0.586 Sum_probs=73.7
Q ss_pred CCCeEEEeCCCCCCcHHHHHHHHccCCCeEEEEEeeCCCCCCcccEEEEEeecHHHHHHHHHHhCCceeCCeeeEEEecc
Q 028130 48 PGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLITVEKAK 127 (213)
Q Consensus 48 ~~~~v~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~a~ 127 (213)
+.++|||+|||..+++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|++||+. +..|+|+.|.|.++.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~i~v~~~~ 79 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHILDGKVIDPKRAI 79 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEETTEECCCEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--ccccCCeEccccccc
Confidence 467999999999999999999999999999999999988999999999999999999999994 678999999998875
Q ss_pred cC
Q 028130 128 RS 129 (213)
Q Consensus 128 ~~ 129 (213)
..
T Consensus 80 ~~ 81 (167)
T 2cjk_A 80 PR 81 (167)
T ss_dssp CH
T ss_pred ch
Confidence 43
No 183
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=5.7e-16 Score=111.67 Aligned_cols=82 Identities=22% Similarity=0.261 Sum_probs=70.1
Q ss_pred CCCCCCeEEEeCCCCCCc-----------HHHHHHHHccCCCeEEEEEeeCCCCCCcccEEEEEeecHHHHHHHHHHhCC
Q 028130 45 AANPGNNLYVTGLSTRVT-----------NADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNR 113 (213)
Q Consensus 45 ~~~~~~~v~V~nLp~~~t-----------~~~L~~~F~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~Ai~~l~g 113 (213)
...+..+|+|.||..... +++|+++|++||.|..|.| .+. .++|||||+|.+.++|++||+.|||
T Consensus 11 ~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~lng 86 (112)
T 2dit_A 11 RMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTLDG 86 (112)
T ss_dssp CCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHSTT
T ss_pred CCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHcCC
Confidence 346788999999954332 5799999999999999966 443 3679999999999999999999999
Q ss_pred ceeCCeeeEEEecccCC
Q 028130 114 SVLEGRLITVEKAKRSR 130 (213)
Q Consensus 114 ~~i~g~~i~V~~a~~~~ 130 (213)
..|+|+.|.|.++.+..
T Consensus 87 ~~~~gr~l~v~~a~~~~ 103 (112)
T 2dit_A 87 RWFGGRQITAQAWDGTT 103 (112)
T ss_dssp CEETTEECEEEECCSCC
T ss_pred CEECCcEEEEEEeCCCC
Confidence 99999999999997764
No 184
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.68 E-value=2.3e-16 Score=124.54 Aligned_cols=80 Identities=15% Similarity=0.284 Sum_probs=72.7
Q ss_pred CCCeEEEeCCCCCCcHHHHHHHHccCCCeEEEEEeeCCCCCCcccEEEEEeecHHHHHHHHHHhCCceeCCeeeEEEecc
Q 028130 48 PGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLITVEKAK 127 (213)
Q Consensus 48 ~~~~v~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~a~ 127 (213)
..++|||+|||..+++++|+++|++||.|..|.|+.+. ++.++|||||+|++.++|++||+.+ +..|+|+.|.|.+++
T Consensus 108 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~-~~~~kG~aFVeF~~~e~A~~A~~~~-~~~~~Gr~l~V~~~~ 185 (193)
T 2voo_A 108 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTL-HKAFKGSIFVVFDSIESAKKFVETP-GQKYKETDLLILFKD 185 (193)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECT-TCCEEEEEEEEESSHHHHHHHHHCT-TCEETTEECEEEETT
T ss_pred ccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHhC-CCeECCEEEEEEEhH
Confidence 35799999999999999999999999999999999876 5889999999999999999999855 568999999999876
Q ss_pred cC
Q 028130 128 RS 129 (213)
Q Consensus 128 ~~ 129 (213)
.-
T Consensus 186 ~y 187 (193)
T 2voo_A 186 DY 187 (193)
T ss_dssp TC
T ss_pred HH
Confidence 43
No 185
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.67 E-value=1.6e-16 Score=128.25 Aligned_cols=80 Identities=26% Similarity=0.316 Sum_probs=74.1
Q ss_pred CCCCCeEEEeCCCC-CCcHHHHHHHHccCCCeEEEEEeeCCCCCCcccEEEEEeecHHHHHHHHHHhCCceeCCeeeEEE
Q 028130 46 ANPGNNLYVTGLST-RVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLITVE 124 (213)
Q Consensus 46 ~~~~~~v~V~nLp~-~~t~~~L~~~F~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~ 124 (213)
.+++++|||+|||. .+++++|+++|++||.|..|.|+.++ +|||||+|.+.++|++||+.|||..|.|+.|.|.
T Consensus 31 ~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~ 105 (229)
T 2adc_A 31 GAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRIT 105 (229)
T ss_dssp CCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 46778999999999 99999999999999999999998764 5899999999999999999999999999999999
Q ss_pred ecccCC
Q 028130 125 KAKRSR 130 (213)
Q Consensus 125 ~a~~~~ 130 (213)
++....
T Consensus 106 ~a~~~~ 111 (229)
T 2adc_A 106 LSKHQN 111 (229)
T ss_dssp CCSCCC
T ss_pred EecCcc
Confidence 997653
No 186
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.67 E-value=3e-16 Score=129.88 Aligned_cols=79 Identities=20% Similarity=0.254 Sum_probs=72.3
Q ss_pred CCCCCCeEEEeCCCCCCcHHHHHHHHccCCCeEEEEEeeCCCCCCcccEEEEEeecHHHHHHHHHHhCCceeC-CeeeEE
Q 028130 45 AANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLE-GRLITV 123 (213)
Q Consensus 45 ~~~~~~~v~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~-g~~i~V 123 (213)
...+.++|||+|||..+++++|+++|++||.|+.|.|+.+. +|||||+|.+.++|++||+.|||..|. |+.|+|
T Consensus 203 ~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v 277 (282)
T 3pgw_A 203 ENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR-----HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKI 277 (282)
T ss_pred CCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC-----CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEE
Confidence 44567899999999999999999999999999999998654 379999999999999999999999999 999999
Q ss_pred Eeccc
Q 028130 124 EKAKR 128 (213)
Q Consensus 124 ~~a~~ 128 (213)
+|++.
T Consensus 278 ~~akk 282 (282)
T 3pgw_A 278 SFAKK 282 (282)
T ss_pred EEecC
Confidence 99863
No 187
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.66 E-value=5e-16 Score=128.61 Aligned_cols=84 Identities=20% Similarity=0.177 Sum_probs=78.3
Q ss_pred CCCCCeEEEeCCCCCC-cHHHHHHHHccCCCeEEEEEeeCCCCCCcccEEEEEeecHHHHHHHHHHhCCceeCCeeeEEE
Q 028130 46 ANPGNNLYVTGLSTRV-TNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLITVE 124 (213)
Q Consensus 46 ~~~~~~v~V~nLp~~~-t~~~L~~~F~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~ 124 (213)
..+.++|||+|||..+ ++++|+++|++||.|..|.|+.+. ++.++|||||+|.+.++|++||..|||..|+|+.|.|.
T Consensus 181 ~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 259 (284)
T 3smz_A 181 LLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQ-DGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVS 259 (284)
T ss_dssp TTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECS-SCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred cCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECC-CCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEE
Confidence 3567899999999995 999999999999999999998876 78899999999999999999999999999999999999
Q ss_pred ecccCC
Q 028130 125 KAKRSR 130 (213)
Q Consensus 125 ~a~~~~ 130 (213)
++.++.
T Consensus 260 ~a~~~~ 265 (284)
T 3smz_A 260 FCAPGP 265 (284)
T ss_dssp ECCSSS
T ss_pred EecCCC
Confidence 998765
No 188
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.66 E-value=6.2e-16 Score=128.07 Aligned_cols=83 Identities=24% Similarity=0.315 Sum_probs=78.8
Q ss_pred CCCeEEEeCCCCCCcHHHHHHHHccCCCeEEEEEeeCCCCCCcccEEEEEeecHHHHHHHHHHhCCceeCCeeeEEEecc
Q 028130 48 PGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLITVEKAK 127 (213)
Q Consensus 48 ~~~~v~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~a~ 127 (213)
+.++|||+|||..+++++|+++|.+||.|..|.|+.+..++.++|||||+|.+.++|++||+.|||..|+|+.|.|.++.
T Consensus 94 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a~ 173 (284)
T 3smz_A 94 TDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTD 173 (284)
T ss_dssp CSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECC
Confidence 45799999999999999999999999999999999998899999999999999999999999999999999999999987
Q ss_pred cCC
Q 028130 128 RSR 130 (213)
Q Consensus 128 ~~~ 130 (213)
...
T Consensus 174 ~~~ 176 (284)
T 3smz_A 174 AGQ 176 (284)
T ss_dssp GGG
T ss_pred CCC
Confidence 654
No 189
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.64 E-value=8.8e-17 Score=123.73 Aligned_cols=85 Identities=22% Similarity=0.293 Sum_probs=73.4
Q ss_pred CCCCCCCeEEEeCCCCCCcHHHHHHHHccCCCeEEEEEeeCCCCCCcccEEEEEeecHHHHHHHHHHhCCceeCCeeeEE
Q 028130 44 DAANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLITV 123 (213)
Q Consensus 44 ~~~~~~~~v~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V 123 (213)
....+.++|||+|||..+++++|+++|.+||.|.. .++.+..++.++|||||+|.+.++|++||+ |||..|.|+.|.|
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~-~~~~~~~~~~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~v 85 (175)
T 1fje_B 8 SESTTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKL 85 (175)
T ss_dssp SSCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGEEETTEEEEE
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEEECCCCccccEEEEEECCHHHHHHHHh-cCCCEeCCeEEEE
Confidence 34567889999999999999999999999998765 233344577888999999999999999995 9999999999999
Q ss_pred EecccCC
Q 028130 124 EKAKRSR 130 (213)
Q Consensus 124 ~~a~~~~ 130 (213)
.++....
T Consensus 86 ~~~~~~~ 92 (175)
T 1fje_B 86 EKPKGRD 92 (175)
T ss_dssp ECCCCSS
T ss_pred ecCCCcc
Confidence 9987654
No 190
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.64 E-value=1.2e-15 Score=119.76 Aligned_cols=79 Identities=22% Similarity=0.327 Sum_probs=72.3
Q ss_pred CCCCCeEEEeCCCCCCcHHHHHHHHccCC-CeEEEEEeeCCCCCCcccEEEEEeecHHHHHHHHHHhCCceeC-CeeeEE
Q 028130 46 ANPGNNLYVTGLSTRVTNADLEKFFGGEG-KVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLE-GRLITV 123 (213)
Q Consensus 46 ~~~~~~v~V~nLp~~~t~~~L~~~F~~~G-~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~-g~~i~V 123 (213)
.++.++|||+|||..+++++|+++|.+|| .|..|.|+.+. +|||||+|.+.++|++||..|||..|+ |+.|.|
T Consensus 117 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v 191 (198)
T 1qm9_A 117 FPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKD-----RKMALIQMGSVEEAVQALIDLHNHDLGENHHLRV 191 (198)
T ss_dssp CCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESSTT-----SSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCE
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeCC-----CcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEE
Confidence 45689999999999999999999999999 99999986532 489999999999999999999999999 999999
Q ss_pred EecccC
Q 028130 124 EKAKRS 129 (213)
Q Consensus 124 ~~a~~~ 129 (213)
.|++++
T Consensus 192 ~~a~~~ 197 (198)
T 1qm9_A 192 SFSKST 197 (198)
T ss_dssp EEECCC
T ss_pred Eeeccc
Confidence 998764
No 191
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.64 E-value=4.3e-16 Score=122.36 Aligned_cols=77 Identities=27% Similarity=0.334 Sum_probs=71.9
Q ss_pred CCeEEEeCCCC-CCcHHHHHHHHccCCCeEEEEEeeCCCCCCcccEEEEEeecHHHHHHHHHHhCCceeCCeeeEEEecc
Q 028130 49 GNNLYVTGLST-RVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLITVEKAK 127 (213)
Q Consensus 49 ~~~v~V~nLp~-~~t~~~L~~~F~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~a~ 127 (213)
+++|||+|||. .+++++|+++|++||.|..|.|+.++ +|||||+|.+.++|++||+.|||..|.|+.|.|.++.
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~ 77 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSK 77 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEec
Confidence 57999999999 99999999999999999999998764 5899999999999999999999999999999999988
Q ss_pred cCC
Q 028130 128 RSR 130 (213)
Q Consensus 128 ~~~ 130 (213)
...
T Consensus 78 ~~~ 80 (198)
T 1qm9_A 78 HQN 80 (198)
T ss_dssp CCS
T ss_pred CCC
Confidence 654
No 192
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.63 E-value=1e-15 Score=109.28 Aligned_cols=82 Identities=15% Similarity=0.242 Sum_probs=70.8
Q ss_pred CCCCeEEEeCC--CCCCc--------HHHHHHHHccCCCeEEEEEeeCCCC--CCcccEEEEEeecHHHHHHHHHHhCCc
Q 028130 47 NPGNNLYVTGL--STRVT--------NADLEKFFGGEGKVTECHLVTDPRT--RESCGFAFVTMETVEGADRCIKYLNRS 114 (213)
Q Consensus 47 ~~~~~v~V~nL--p~~~t--------~~~L~~~F~~~G~i~~~~i~~~~~t--~~~~g~afV~f~~~~~a~~Ai~~l~g~ 114 (213)
.|+.+|.|.|+ |.++. +++|+++|++||.|+.|.|+.+..+ +.++|||||+|.+.++|++||+.|||.
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 46789999998 33333 3689999999999999999987654 357899999999999999999999999
Q ss_pred eeCCeeeEEEeccc
Q 028130 115 VLEGRLITVEKAKR 128 (213)
Q Consensus 115 ~i~g~~i~V~~a~~ 128 (213)
.|+|++|.|.++..
T Consensus 83 ~f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 83 KFANRVVVTKYCDP 96 (105)
T ss_dssp EETTEECEEEEECH
T ss_pred EeCCCEEEEEEeCH
Confidence 99999999998754
No 193
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.63 E-value=5e-16 Score=123.62 Aligned_cols=79 Identities=15% Similarity=0.191 Sum_probs=69.2
Q ss_pred CCCCCeEEEeCCCCCCcHHHHHHHHccCCCe--EEEEEeeCCCCCCcccEEEEEeecHHHHHHHHHHhCCceeCCe----
Q 028130 46 ANPGNNLYVTGLSTRVTNADLEKFFGGEGKV--TECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGR---- 119 (213)
Q Consensus 46 ~~~~~~v~V~nLp~~~t~~~L~~~F~~~G~i--~~~~i~~~~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~---- 119 (213)
..+..+|||+|||+.+++++|+++|++||.| ..|.|+.+. +..+|||||+|.+.++|.+||..|||.+|.|.
T Consensus 120 ~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~--~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~ 197 (205)
T 3tyt_A 120 QHPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGK--SERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPY 197 (205)
T ss_dssp CCCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCC--SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSS
T ss_pred CCCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCC--CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCc
Confidence 3567899999999999999999999999999 888887664 44569999999999999999999999999886
Q ss_pred eeEEEec
Q 028130 120 LITVEKA 126 (213)
Q Consensus 120 ~i~V~~a 126 (213)
++.|.++
T Consensus 198 p~~vk~~ 204 (205)
T 3tyt_A 198 PYTLKLC 204 (205)
T ss_dssp CEECEEE
T ss_pred ceEEEec
Confidence 5666654
No 194
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.62 E-value=1.5e-15 Score=124.85 Aligned_cols=79 Identities=24% Similarity=0.413 Sum_probs=72.2
Q ss_pred CCCCCCCeEEEeCCCCCCcHHHHHHHHccCCCeEEEEEeeCCCCCCcccEEEEEeecHHHHHHHHHHhCCceeCCeeeEE
Q 028130 44 DAANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLITV 123 (213)
Q Consensus 44 ~~~~~~~~v~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V 123 (213)
....+.++|||+|||..+|+++|+++|.+||.|..|.|..+ +|||||+|.+.++|+.||..|||..|.|+.|.|
T Consensus 17 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~------kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v 90 (261)
T 3sde_A 17 KTYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRD------RGFGFIRLESRTLAEIAKAELDGTILKSRPLRI 90 (261)
T ss_dssp CSSCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CcEEEEEECCHHHHHHHHHHcCCcEECCceeEe
Confidence 34466789999999999999999999999999999998754 489999999999999999999999999999999
Q ss_pred Eeccc
Q 028130 124 EKAKR 128 (213)
Q Consensus 124 ~~a~~ 128 (213)
.++..
T Consensus 91 ~~a~~ 95 (261)
T 3sde_A 91 RFATH 95 (261)
T ss_dssp EECCC
T ss_pred eeccc
Confidence 99864
No 195
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.62 E-value=1.9e-15 Score=121.85 Aligned_cols=79 Identities=22% Similarity=0.332 Sum_probs=72.1
Q ss_pred CCCCCeEEEeCCCCCCcHHHHHHHHccCC-CeEEEEEeeCCCCCCcccEEEEEeecHHHHHHHHHHhCCceeC-CeeeEE
Q 028130 46 ANPGNNLYVTGLSTRVTNADLEKFFGGEG-KVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLE-GRLITV 123 (213)
Q Consensus 46 ~~~~~~v~V~nLp~~~t~~~L~~~F~~~G-~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~-g~~i~V 123 (213)
..+.++|||+|||..+++++|+++|.+|| .|..|.|+.. .+|||||+|.+.++|++||+.|||..|+ |+.|.|
T Consensus 148 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v 222 (229)
T 2adc_A 148 FPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRV 222 (229)
T ss_dssp CCSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSS-----STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEE
T ss_pred CCCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEEC-----CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEE
Confidence 45679999999999999999999999999 9999998643 2489999999999999999999999999 999999
Q ss_pred EecccC
Q 028130 124 EKAKRS 129 (213)
Q Consensus 124 ~~a~~~ 129 (213)
.|++++
T Consensus 223 ~~a~~~ 228 (229)
T 2adc_A 223 SFSKST 228 (229)
T ss_dssp EECSSC
T ss_pred EEecCC
Confidence 998764
No 196
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.61 E-value=3.4e-15 Score=108.77 Aligned_cols=81 Identities=15% Similarity=0.224 Sum_probs=70.7
Q ss_pred CCCeEEEeCCC--CCC---cHHHHHHHHccCCCeEEEEEeeCCC----CCCcccEEEEEeecHHHHHHHHHHhCCceeCC
Q 028130 48 PGNNLYVTGLS--TRV---TNADLEKFFGGEGKVTECHLVTDPR----TRESCGFAFVTMETVEGADRCIKYLNRSVLEG 118 (213)
Q Consensus 48 ~~~~v~V~nLp--~~~---t~~~L~~~F~~~G~i~~~~i~~~~~----t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g 118 (213)
++.+|+|.|+- .++ .+++|++.|++||.|..|.|+.+.. ++..+|||||+|.+.++|++||+.|||..|+|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 67899999983 222 3689999999999999999998764 45678999999999999999999999999999
Q ss_pred eeeEEEeccc
Q 028130 119 RLITVEKAKR 128 (213)
Q Consensus 119 ~~i~V~~a~~ 128 (213)
+.|.|.++..
T Consensus 99 R~i~v~~~~~ 108 (118)
T 3ue2_A 99 RKVVAEVYDQ 108 (118)
T ss_dssp EECEEEEECH
T ss_pred cEEEEEEcCh
Confidence 9999999753
No 197
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.60 E-value=4e-15 Score=122.29 Aligned_cols=82 Identities=27% Similarity=0.315 Sum_probs=73.9
Q ss_pred CCCeEEEeCCCCCCcHHHHHHHHccCCCeEEEEEeeCCCCCCcccEEEEEeecHHHHHHHHHHhCC-ceeC---CeeeEE
Q 028130 48 PGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNR-SVLE---GRLITV 123 (213)
Q Consensus 48 ~~~~v~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~Ai~~l~g-~~i~---g~~i~V 123 (213)
+.++|||+|||..+++++|+++|.+||.|..|.|+.+ .++.++|||||+|.+.++|.+||..||+ ..+. +++|.|
T Consensus 95 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v 173 (261)
T 3sde_A 95 HGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVD-DRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIV 173 (261)
T ss_dssp CSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEE-TTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEE
T ss_pred cCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeC-CCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEE
Confidence 3579999999999999999999999999999999998 4899999999999999999999999954 4444 899999
Q ss_pred EecccCC
Q 028130 124 EKAKRSR 130 (213)
Q Consensus 124 ~~a~~~~ 130 (213)
.++....
T Consensus 174 ~~~~~~~ 180 (261)
T 3sde_A 174 EPMEQFD 180 (261)
T ss_dssp EECCCEE
T ss_pred eeccccC
Confidence 9987654
No 198
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.60 E-value=6.9e-16 Score=110.03 Aligned_cols=72 Identities=21% Similarity=0.389 Sum_probs=63.2
Q ss_pred EeCCCCCCcHHHHHHHH------------ccCCCeEEEEEeeCCCCCCcccEEEEEeecHHHHHHHHHHhCCceeCCeee
Q 028130 54 VTGLSTRVTNADLEKFF------------GGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLI 121 (213)
Q Consensus 54 V~nLp~~~t~~~L~~~F------------~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i 121 (213)
+.||+..+++++|+++| ++||.|..|.|+.+. +++++|||||+|.+.++|++|+..|||..|+|+.|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~-~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNL-GDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSS-SSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCC-CCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 55666777777777666 999999999999876 47889999999999999999999999999999999
Q ss_pred EEEec
Q 028130 122 TVEKA 126 (213)
Q Consensus 122 ~V~~a 126 (213)
.|+++
T Consensus 99 ~v~~s 103 (104)
T 1jmt_A 99 HAELS 103 (104)
T ss_dssp CEEEC
T ss_pred EEEEc
Confidence 99986
No 199
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.59 E-value=3.2e-15 Score=124.21 Aligned_cols=82 Identities=17% Similarity=0.261 Sum_probs=70.9
Q ss_pred CCCeEEEeCCCCCCcHHHHHHHHccCC-CeEEEEEeeCCCCCCcccEEEEEeecHHHHHHHHHHhCCceeCCeeeEEEec
Q 028130 48 PGNNLYVTGLSTRVTNADLEKFFGGEG-KVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLITVEKA 126 (213)
Q Consensus 48 ~~~~v~V~nLp~~~t~~~L~~~F~~~G-~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~a 126 (213)
..++|||+|||..+++++|+++|.+|| .|..|.|+.+.. +.++|||||+|.+.++|++||..|||..|.|+.|.|.++
T Consensus 116 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 194 (292)
T 2ghp_A 116 TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRF-NTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVS 194 (292)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC--------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCC-CCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 478999999999999999999999999 999999988764 778899999999999999999999999999999999998
Q ss_pred ccCC
Q 028130 127 KRSR 130 (213)
Q Consensus 127 ~~~~ 130 (213)
.+..
T Consensus 195 ~~~~ 198 (292)
T 2ghp_A 195 NPLE 198 (292)
T ss_dssp CCC-
T ss_pred CCCc
Confidence 7654
No 200
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.59 E-value=1.8e-14 Score=101.84 Aligned_cols=78 Identities=15% Similarity=0.106 Sum_probs=64.5
Q ss_pred CCeEEEeCCC-------CCCcHHHHHHHHccCCCeEEEEEeeCCCCCCcccEEEEEeecHHHHHHHHHHhCCceeCCeee
Q 028130 49 GNNLYVTGLS-------TRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLI 121 (213)
Q Consensus 49 ~~~v~V~nLp-------~~~t~~~L~~~F~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i 121 (213)
...|.|.-.. ..+++++|+++|++||+|..|.|+ +.++|||||+|++.++|+.||+.+++ +.|+.|
T Consensus 10 ~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l 82 (100)
T 2d9o_A 10 TPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQNEVG--LVDNPL 82 (100)
T ss_dssp SCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHTCCB--CSSSBC
T ss_pred cceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHhcCC--CCCCeE
Confidence 4567776543 458999999999999999999987 35679999999999999999997544 689999
Q ss_pred EEEecccCCCCC
Q 028130 122 TVEKAKRSRGRT 133 (213)
Q Consensus 122 ~V~~a~~~~~~~ 133 (213)
.|.|++.+....
T Consensus 83 ~V~~a~~~~~~~ 94 (100)
T 2d9o_A 83 KISWLEGQPQDA 94 (100)
T ss_dssp EEECSSCCCCCC
T ss_pred EEEEccCCCCCC
Confidence 999998775433
No 201
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.58 E-value=5e-15 Score=113.28 Aligned_cols=76 Identities=18% Similarity=0.464 Sum_probs=67.3
Q ss_pred CCCeEEEeCCCCCCcHHHHHHHHccC----C-------CeEEEEEeeCCCCCCcccEEEEEeecHHHHHHHHHHhCCcee
Q 028130 48 PGNNLYVTGLSTRVTNADLEKFFGGE----G-------KVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVL 116 (213)
Q Consensus 48 ~~~~v~V~nLp~~~t~~~L~~~F~~~----G-------~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i 116 (213)
+.++|||+|||..+++++|+++|++| | .|..+.+..+ +|||||+|.+.++|++|| .||+..|
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~~------~g~afV~f~~~~~A~~A~-~~~~~~~ 75 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGIIF 75 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEETT------TTEEEEEESSHHHHHHHG-GGTTCEE
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecCC------CCEEEEEeCCHHHHHHHH-HhCCcEe
Confidence 56799999999999999999999999 6 6777766543 589999999999999999 7999999
Q ss_pred CCeeeEEEecccCC
Q 028130 117 EGRLITVEKAKRSR 130 (213)
Q Consensus 117 ~g~~i~V~~a~~~~ 130 (213)
.|+.|.|.++....
T Consensus 76 ~g~~i~v~~~~~~~ 89 (172)
T 2g4b_A 76 QGQSLKIRRPHDYQ 89 (172)
T ss_dssp TTEECEEECCSSCC
T ss_pred cCceeeecCCcccC
Confidence 99999999876553
No 202
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.56 E-value=9.3e-15 Score=114.26 Aligned_cols=76 Identities=17% Similarity=0.434 Sum_probs=66.0
Q ss_pred CCCeEEEeCCCCCCcHHHHHHHHccC----C-------CeEEEEEeeCCCCCCcccEEEEEeecHHHHHHHHHHhCCcee
Q 028130 48 PGNNLYVTGLSTRVTNADLEKFFGGE----G-------KVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVL 116 (213)
Q Consensus 48 ~~~~v~V~nLp~~~t~~~L~~~F~~~----G-------~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i 116 (213)
..++|||+|||..+++++|+++|.+| | .|..+.+.. .+|||||+|.+.++|++|| .|||..|
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~~------~~g~afV~F~~~~~A~~Al-~l~g~~~ 75 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ------DKNFAFLEFRSVDETTQAM-AFDGIIF 75 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEET------TTTEEEEEESCSHHHHHHG-GGTTEEE
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEecC------CCCEEEEEeCCHHHHHHHH-HhcCCEE
Confidence 46799999999999999999999999 4 555555543 4589999999999999999 7999999
Q ss_pred CCeeeEEEecccCC
Q 028130 117 EGRLITVEKAKRSR 130 (213)
Q Consensus 117 ~g~~i~V~~a~~~~ 130 (213)
.|+.|.|.++....
T Consensus 76 ~g~~i~v~~~~~~~ 89 (198)
T 2yh0_A 76 QGQSLKIRRPHDYQ 89 (198)
T ss_dssp TTEEEEEECCCCCC
T ss_pred cCceEEEeCCCCCC
Confidence 99999999987653
No 203
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.54 E-value=1.4e-14 Score=123.40 Aligned_cols=76 Identities=18% Similarity=0.229 Sum_probs=65.7
Q ss_pred CCCCCeEEEeC--CCCCCcHHHHHHHHccCCCeEEEEEeeCCCCCCcccEEEEEeecHHHHHHHHHHhCCceeC---Ce-
Q 028130 46 ANPGNNLYVTG--LSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLE---GR- 119 (213)
Q Consensus 46 ~~~~~~v~V~n--Lp~~~t~~~L~~~F~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~---g~- 119 (213)
..++.+|||+| |+..+|+++|+++|++||+|..|.|.. .+|||||+|.+.++|++||+.|||+++. |.
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~ 88 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQK 88 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCE
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCccccccCCc
Confidence 57788999999 578999999999999999999887753 3589999999999999999999999873 34
Q ss_pred -eeEEEecc
Q 028130 120 -LITVEKAK 127 (213)
Q Consensus 120 -~i~V~~a~ 127 (213)
.|.|.++.
T Consensus 89 ~~ly~~~~~ 97 (345)
T 3tht_A 89 ITLYLNFVE 97 (345)
T ss_dssp EECEEEECS
T ss_pred eEEEEEEee
Confidence 57777774
No 204
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.51 E-value=9.4e-14 Score=100.49 Aligned_cols=80 Identities=13% Similarity=0.153 Sum_probs=66.8
Q ss_pred CCCCCCeEEEeCCCCCC----------cHHHHHHHHccCCCeEEEEEeeCCCCCCcccEEEEEeecHHHHHHHHHHhCCc
Q 028130 45 AANPGNNLYVTGLSTRV----------TNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRS 114 (213)
Q Consensus 45 ~~~~~~~v~V~nLp~~~----------t~~~L~~~F~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~ 114 (213)
++.++.+|.|.|+=... .+++|+++|++||.|+.|.|..+. .+|||||+|.+.++|++||+.|||.
T Consensus 3 ~p~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~ 78 (114)
T 3s6e_A 3 QPLATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGR 78 (114)
T ss_dssp CCCCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTC
T ss_pred CCCCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCC
Confidence 34677889999973211 135789999999999999886542 4799999999999999999999999
Q ss_pred eeCCeeeEEEeccc
Q 028130 115 VLEGRLITVEKAKR 128 (213)
Q Consensus 115 ~i~g~~i~V~~a~~ 128 (213)
.|+|+.|.|.++..
T Consensus 79 ~f~GR~i~v~~~~~ 92 (114)
T 3s6e_A 79 WFAGKMITAAYVPL 92 (114)
T ss_dssp EETTEECEEEEECH
T ss_pred EECCEEEEEEEEcH
Confidence 99999999999753
No 205
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.47 E-value=3.5e-13 Score=98.09 Aligned_cols=83 Identities=17% Similarity=0.157 Sum_probs=72.9
Q ss_pred CCCCCCCCCCCCeEEEeCCCCC-CcHHHHHHHHccCCCeEEEEEeeCCCCCCcccEEEEEeec-HHHHHHHHHHhC--Cc
Q 028130 39 RSRSPDAANPGNNLYVTGLSTR-VTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMET-VEGADRCIKYLN--RS 114 (213)
Q Consensus 39 ~~~~~~~~~~~~~v~V~nLp~~-~t~~~L~~~F~~~G~i~~~~i~~~~~t~~~~g~afV~f~~-~~~a~~Ai~~l~--g~ 114 (213)
.++..-..++++.|||+||+.. ++.++|+++|++||+|..|.|+.+.. .|||.|.+ .++|+.||..|| +.
T Consensus 8 ~~~~~~~~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~~~~ 81 (121)
T 1owx_A 8 HHHGSLEEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDANNGNL 81 (121)
T ss_dssp -CCCCCSCCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTTTSCB
T ss_pred cccCcccccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC------EEEEEECCChHHHHHHHHHhhcCCc
Confidence 3556677889999999999999 99999999999999999999987763 79999999 899999999994 77
Q ss_pred eeCCeeeEEEecc
Q 028130 115 VLEGRLITVEKAK 127 (213)
Q Consensus 115 ~i~g~~i~V~~a~ 127 (213)
+|.|..+++++..
T Consensus 82 ~i~g~~~~~evL~ 94 (121)
T 1owx_A 82 QLRNKEVTWEVLE 94 (121)
T ss_dssp CTTSSSEEEEECC
T ss_pred EEeCcEEEEEECC
Confidence 8999999888653
No 206
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.36 E-value=1.7e-12 Score=89.15 Aligned_cols=74 Identities=26% Similarity=0.260 Sum_probs=62.8
Q ss_pred CCCCeEEEeCCC----CCCcH----HHHHHHHccCCCeEEEEEeeCCCCCCcccEEEEEeecHHHHHHHHHHhCCceeCC
Q 028130 47 NPGNNLYVTGLS----TRVTN----ADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEG 118 (213)
Q Consensus 47 ~~~~~v~V~nLp----~~~t~----~~L~~~F~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g 118 (213)
+|..||+|.-++ .++.. .+|.+.|.+||+|..+.|+.+ .+||+|.+.++|.+||+ |||.+|+|
T Consensus 5 Ppd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d--------~~fVtF~d~~sAlaAi~-mnG~~v~G 75 (91)
T 2dnr_A 5 SSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVED--------KMWVTFLEGSSALNVLS-LNGKELLN 75 (91)
T ss_dssp CSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSS--------SEEEEESSHHHHHHGGG-GTTCEETT
T ss_pred CCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecC--------CEEEEECChHHHHHHHh-cCCeEeCC
Confidence 566788887766 22333 578999999999999999875 48999999999999999 99999999
Q ss_pred eeeEEEecccC
Q 028130 119 RLITVEKAKRS 129 (213)
Q Consensus 119 ~~i~V~~a~~~ 129 (213)
+.|+|+++.+.
T Consensus 76 r~LkV~lkt~d 86 (91)
T 2dnr_A 76 RTITIALKSPS 86 (91)
T ss_dssp EEEEEEECCCS
T ss_pred eEEEEEeCCCC
Confidence 99999998754
No 207
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.22 E-value=1.1e-11 Score=85.53 Aligned_cols=73 Identities=14% Similarity=0.179 Sum_probs=62.0
Q ss_pred CCCCCeEEEeCCCCC-----CcH----HHHHHHHccCCCeEEEEEeeCCCCCCcccEEEEEeecHHHHHHHHHHhCCcee
Q 028130 46 ANPGNNLYVTGLSTR-----VTN----ADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVL 116 (213)
Q Consensus 46 ~~~~~~v~V~nLp~~-----~t~----~~L~~~F~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i 116 (213)
-+|..||+|.-++.. +.. .+|.+.|.+||+|..+.|+.+ -+||+|.+.++|.+||+ |||.+|
T Consensus 12 GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d--------~~fVtF~d~~sAl~AI~-ldG~~v 82 (95)
T 1ufw_A 12 GPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQG--------QMLVTFADSHSALSVLD-VDGMKV 82 (95)
T ss_dssp CCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETT--------EEEEECSCSHHHHHHHH-GGGSEE
T ss_pred CCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecC--------cEEEEEcChHHHHHHHh-cCCeee
Confidence 367789999887632 222 568999999999999999876 39999999999999999 999999
Q ss_pred CCeeeEEEecc
Q 028130 117 EGRLITVEKAK 127 (213)
Q Consensus 117 ~g~~i~V~~a~ 127 (213)
+|+.|+|.+..
T Consensus 83 ~Gr~L~V~~k~ 93 (95)
T 1ufw_A 83 KGRAVKISGPS 93 (95)
T ss_dssp TTEEEEEECCC
T ss_pred CCeEEEEeccC
Confidence 99999999853
No 208
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=99.14 E-value=3.1e-10 Score=90.70 Aligned_cols=80 Identities=15% Similarity=0.199 Sum_probs=65.7
Q ss_pred CCeEEEeCCC-----CCCcHHHHHHHHccCCCeEEEEEeeCC----CCCCcccEEEEEeecHHHHHHHHHHhCCceeCCe
Q 028130 49 GNNLYVTGLS-----TRVTNADLEKFFGGEGKVTECHLVTDP----RTRESCGFAFVTMETVEGADRCIKYLNRSVLEGR 119 (213)
Q Consensus 49 ~~~v~V~nLp-----~~~t~~~L~~~F~~~G~i~~~~i~~~~----~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~ 119 (213)
...+.+.|+- ..-.+++|.+.|.+||.|..+.|+.+. .++..+|++||+|.+.++|++||+.|||..|+|+
T Consensus 124 s~v~~l~n~v~~~e~~~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr 203 (222)
T 3dxb_A 124 STVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGR 203 (222)
T ss_dssp CSEEEEESSCCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSS
T ss_pred cccchhhcCCCHHHHHHHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCe
Confidence 3455555542 234567899999999999999998544 3458899999999999999999999999999999
Q ss_pred eeEEEeccc
Q 028130 120 LITVEKAKR 128 (213)
Q Consensus 120 ~i~V~~a~~ 128 (213)
+|.|.++..
T Consensus 204 ~i~~~~~~~ 212 (222)
T 3dxb_A 204 KVVAEVYDQ 212 (222)
T ss_dssp BCEEEECCH
T ss_pred EEEEEEcCH
Confidence 999999753
No 209
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.90 E-value=9.3e-09 Score=72.47 Aligned_cols=74 Identities=20% Similarity=0.248 Sum_probs=67.4
Q ss_pred CCCCCeEEEeCCCCCCcHHHHHHHHccC-----CCeEEEEEeeCCCCCCcccEEEEEeecHHHHHHHHHHhCCceeCCee
Q 028130 46 ANPGNNLYVTGLSTRVTNADLEKFFGGE-----GKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRL 120 (213)
Q Consensus 46 ~~~~~~v~V~nLp~~~t~~~L~~~F~~~-----G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~ 120 (213)
.+...+|-|-|||.+++...|..+++.+ |.|..|.+..+. +-|+|+|.+...|-+|.-+|+|.+|.|++
T Consensus 18 ~~~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH------~GAivef~d~~~AgKasLaL~G~ef~gr~ 91 (117)
T 2l9w_A 18 KELETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDF------NGAIIIFRDSKFAAKMLMILNGSQFQGKV 91 (117)
T ss_dssp TTTTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTT------TEEEEECSCHHHHHHHHHHHSSEEETTEE
T ss_pred ccCCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCC------CceEEEEccchhhHHHHhhcCCeeecCeE
Confidence 4557799999999999999999999999 999999998776 58999999999999999889999999999
Q ss_pred eEEEe
Q 028130 121 ITVEK 125 (213)
Q Consensus 121 i~V~~ 125 (213)
|.|.-
T Consensus 92 Lr~gT 96 (117)
T 2l9w_A 92 IRSGT 96 (117)
T ss_dssp EEEEC
T ss_pred EEecC
Confidence 99864
No 210
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.41 E-value=8.6e-07 Score=62.07 Aligned_cols=76 Identities=14% Similarity=0.077 Sum_probs=63.9
Q ss_pred CCCeEEEeCCCCCCc-----HHHHHHHHccCCCeEEEEEeeCCCCCCcccEEEEEeecHHHHHHHHHHhCCceeCCeeeE
Q 028130 48 PGNNLYVTGLSTRVT-----NADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLIT 122 (213)
Q Consensus 48 ~~~~v~V~nLp~~~t-----~~~L~~~F~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~ 122 (213)
-.++|+|+||+.++- .+.++++|..|+++....+...- .-..|.|.+.++|.+|-..||+..|+|..|+
T Consensus 4 ~pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSF------RRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r 77 (104)
T 1wey_A 4 GSSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSF------KRVRINFSNPLSAADARLRLHKTEFLGKEMK 77 (104)
T ss_dssp CCCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTT------TEEEEECSSTTHHHHHHHTSTTSEETTEECE
T ss_pred CCceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcc------eEEEEEeCChHHHHHHHHHhccceecCceeE
Confidence 356899999987652 25678999999999887776543 3679999999999999999999999999999
Q ss_pred EEecccC
Q 028130 123 VEKAKRS 129 (213)
Q Consensus 123 V~~a~~~ 129 (213)
|-++...
T Consensus 78 ~YFgq~~ 84 (104)
T 1wey_A 78 LYFAQTL 84 (104)
T ss_dssp EECCCCS
T ss_pred EEecCCC
Confidence 9998744
No 211
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=98.26 E-value=1.1e-05 Score=55.31 Aligned_cols=80 Identities=11% Similarity=0.080 Sum_probs=63.1
Q ss_pred CeEEEeCCCCCCcHHHHHHHHccCCCeEEEEEeeCCCCCC--cccEEEEEeecHHHHHHHHHHhCCceeCCe-----eeE
Q 028130 50 NNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRE--SCGFAFVTMETVEGADRCIKYLNRSVLEGR-----LIT 122 (213)
Q Consensus 50 ~~v~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~t~~--~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~-----~i~ 122 (213)
++|.|.+||+.+|++++.+.+..+.++....++..+.+.+ ...-|+|.|.+.+++....+.++|+.|.+. ...
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~kg~~~~a~ 81 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDNKGQEYPAI 81 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECTTCCEEECE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcCCCCEeeeE
Confidence 5899999999999999999999998887777665543332 235699999999999999999999987432 345
Q ss_pred EEecccC
Q 028130 123 VEKAKRS 129 (213)
Q Consensus 123 V~~a~~~ 129 (213)
|++|.-+
T Consensus 82 VE~AP~q 88 (91)
T 1uw4_A 82 VEFAPFQ 88 (91)
T ss_dssp EEECSSC
T ss_pred EEEcCCC
Confidence 6776543
No 212
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.23 E-value=1.2e-05 Score=56.05 Aligned_cols=74 Identities=20% Similarity=0.266 Sum_probs=61.0
Q ss_pred CCCCeEEEeCCCCCCcHHHHHHHHcc-----CCCeEEEEEeeCCCCCCcccEEEEEeecHHHHHHHHHHhCCceeCCeee
Q 028130 47 NPGNNLYVTGLSTRVTNADLEKFFGG-----EGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLI 121 (213)
Q Consensus 47 ~~~~~v~V~nLp~~~t~~~L~~~F~~-----~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i 121 (213)
.-..+|.|.|||+.+.++.|+-+|+. -|+|+.+.... +-|+|+|.+.+.|+..|+ -..+.|++..|
T Consensus 6 ~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~-k~~H~L~~~~L 76 (104)
T 2dhx_A 6 SGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLA-QADHELHGAQL 76 (104)
T ss_dssp CCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHT-CSCCBSSSSBC
T ss_pred cCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhc-CCcceecCeEE
Confidence 35679999999999999999999987 26788877643 479999999999999988 44678999999
Q ss_pred EEEecccC
Q 028130 122 TVEKAKRS 129 (213)
Q Consensus 122 ~V~~a~~~ 129 (213)
.|....+.
T Consensus 77 sV~P~~~~ 84 (104)
T 2dhx_A 77 SLRPAPPR 84 (104)
T ss_dssp EEEECCCC
T ss_pred EEEcCCCC
Confidence 99765544
No 213
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=98.16 E-value=9.5e-06 Score=58.25 Aligned_cols=75 Identities=9% Similarity=0.134 Sum_probs=59.3
Q ss_pred CCCCCCCeEEEeCCCCCCcHHHHHHHHccCCCeEEEEEeeCCCCCCcccEEEEEeecHHHHHHHHHHhCCceeCC-eeeE
Q 028130 44 DAANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEG-RLIT 122 (213)
Q Consensus 44 ~~~~~~~~v~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g-~~i~ 122 (213)
+.....+.|.|.++|+.. ...|...|++||+|+...... + ..|..|.|.+..+|++||. .||..|+| ..|-
T Consensus 19 ~~~~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~~----~--~NWihI~Y~s~~~A~rAL~-kNG~ii~g~~mIG 90 (119)
T 1wwh_A 19 EDHLDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMSN----T--GNWMHIRYQSKLQARKALS-KDGRIFGESIMIG 90 (119)
T ss_dssp --CGGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEECS----S--SSEEEEEESSHHHHHHHHT-TTTCEETTTEECE
T ss_pred CCCCCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccCC----C--CCeEEEEeCCHHHHHHHHH-hCCeEecCCEEEE
Confidence 345557899999999985 566788999999999887632 1 2599999999999999999 79999985 6677
Q ss_pred EEec
Q 028130 123 VEKA 126 (213)
Q Consensus 123 V~~a 126 (213)
|...
T Consensus 91 V~p~ 94 (119)
T 1wwh_A 91 VKPC 94 (119)
T ss_dssp EEEC
T ss_pred EEEC
Confidence 7664
No 214
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.91 E-value=4.1e-05 Score=52.77 Aligned_cols=55 Identities=20% Similarity=0.309 Sum_probs=45.3
Q ss_pred CCeEEEeCCCCCCcHHHHHHHHccCCCeEEEEEeeCCCCCCcccEEEEEeecHHHHHHHHHHhC
Q 028130 49 GNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLN 112 (213)
Q Consensus 49 ~~~v~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~Ai~~l~ 112 (213)
.+.++| ++|.++...||.++|..||.| .|.++.| ..|||.|.+.+.|..|+..+.
T Consensus 16 ~HVf~l-~FP~ewKt~DI~~lFs~fggv-~I~WidD-------TsAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 16 DHVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDD-------TSAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CSEEEE-ECCTTCCHHHHHHHHTTTCSC-CCEEEET-------TEEEEECSCHHHHHHHHHHHH
T ss_pred CeEEEE-eCChhhhhHHHHHHhhccCCE-EEEEEcC-------CeEEEEecCHHHHHHHHHhcc
Confidence 345555 999999999999999999965 4555554 389999999999999999763
No 215
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.82 E-value=4.8e-05 Score=52.59 Aligned_cols=54 Identities=20% Similarity=0.311 Sum_probs=45.2
Q ss_pred CeEEEeCCCCCCcHHHHHHHHccCCCeEEEEEeeCCCCCCcccEEEEEeecHHHHHHHHHHhC
Q 028130 50 NNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLN 112 (213)
Q Consensus 50 ~~v~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~Ai~~l~ 112 (213)
..++| ++|.++...||.++|..||.| .|.++.+ ..|||.|.+.+.|..|+..+.
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fggv-~I~WidD-------TsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDD-------TSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSEEE-EEEEEET-------TEEEEEEEEECHHHHHHHHHT
T ss_pred eEEEE-eCChhhhhHHHHHHHhccCCE-EEEEEcC-------CeEEEEecCHHHHHHHHHhcc
Confidence 45666 999999999999999999954 5555554 389999999999999999774
No 216
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=97.81 E-value=5e-05 Score=52.48 Aligned_cols=80 Identities=10% Similarity=0.027 Sum_probs=58.3
Q ss_pred CCCeEEEeCCCCCCcHHHHHHHHccCCCeEEEEEeeCCCCCC--cccEEEEEeecHHHHHHHHHHhCCceeCCe-----e
Q 028130 48 PGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRE--SCGFAFVTMETVEGADRCIKYLNRSVLEGR-----L 120 (213)
Q Consensus 48 ~~~~v~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~t~~--~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~-----~ 120 (213)
-.-+|.|..||+.+||+++.+.+..+-++....++..+.+.+ ...-|||.|.+.+++....+.++|..|.+. +
T Consensus 8 ~~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg~~~~ 87 (97)
T 2l08_A 8 HSHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSKGLEYP 87 (97)
T ss_dssp CCCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECTTCCEEE
T ss_pred cceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCCCCEee
Confidence 356899999999999999998888765554433333222221 124689999999999999999999987442 4
Q ss_pred eEEEecc
Q 028130 121 ITVEKAK 127 (213)
Q Consensus 121 i~V~~a~ 127 (213)
..|++|.
T Consensus 88 a~VE~AP 94 (97)
T 2l08_A 88 AVVEFAP 94 (97)
T ss_dssp EEEEECC
T ss_pred eEEEecC
Confidence 5567764
No 217
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=97.77 E-value=3.5e-05 Score=56.09 Aligned_cols=79 Identities=18% Similarity=0.217 Sum_probs=56.6
Q ss_pred CCCCeEEEeCCCCCCcHHHHHHHHccCCCeEE-EEEee------------CCCCC-CcccEEEEEeecHHHHHHHHHHhC
Q 028130 47 NPGNNLYVTGLSTRVTNADLEKFFGGEGKVTE-CHLVT------------DPRTR-ESCGFAFVTMETVEGADRCIKYLN 112 (213)
Q Consensus 47 ~~~~~v~V~nLp~~~t~~~L~~~F~~~G~i~~-~~i~~------------~~~t~-~~~g~afV~f~~~~~a~~Ai~~l~ 112 (213)
...+.|.|.++|+..... +.+.|++||.|+. +.+.. .+... ....|..|.|.+..+|++||. .|
T Consensus 5 ~~e~~VtVFGFp~~~~~~-VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~N 82 (132)
T 3p3d_A 5 NGELAILVFGYPETMANQ-VIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-EN 82 (132)
T ss_dssp ---CEEEEECCCGGGHHH-HHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TT
T ss_pred cCceEEEEEecCHHHHHH-HHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hC
Confidence 345678899998876655 6678999999866 22111 00000 124689999999999999999 89
Q ss_pred CceeCCeeeEEEecc
Q 028130 113 RSVLEGRLITVEKAK 127 (213)
Q Consensus 113 g~~i~g~~i~V~~a~ 127 (213)
|..|+|..|-|....
T Consensus 83 G~ii~G~mIGV~Py~ 97 (132)
T 3p3d_A 83 GAVFNGVLLGVIPYT 97 (132)
T ss_dssp TCEETTEECEEEECC
T ss_pred CeEeCcEEEEEEECC
Confidence 999999988887654
No 218
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=96.97 E-value=0.00041 Score=61.00 Aligned_cols=54 Identities=9% Similarity=0.169 Sum_probs=41.2
Q ss_pred CeEEEeCCCCCCcHHHHHHHHccCCCeEEEEEeeCCCCCCcccEEEEEeecHHHHHHHHH
Q 028130 50 NNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIK 109 (213)
Q Consensus 50 ~~v~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~Ai~ 109 (213)
.+|||. +|..+++.+|.++|++||.|..+.+-.++ | -||+|||.+.+++++++.
T Consensus 54 rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~--g---~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 54 RTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF--G---LYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp TEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS--S---EEEEEECC---CCHHHHS
T ss_pred ceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC--C---eEEEEEeCCHHHHHHHHh
Confidence 589997 79999999999999999999998876543 2 599999999999987765
No 219
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=96.80 E-value=0.00067 Score=50.17 Aligned_cols=42 Identities=17% Similarity=0.186 Sum_probs=37.4
Q ss_pred CCCcccEEEEEeecHHHHHHHHHHh-CCceeCCeeeEEEecccC
Q 028130 87 TRESCGFAFVTMETVEGADRCIKYL-NRSVLEGRLITVEKAKRS 129 (213)
Q Consensus 87 t~~~~g~afV~f~~~~~a~~Ai~~l-~g~~i~g~~i~V~~a~~~ 129 (213)
..+.+|+++|+|.+.++|++||+.| ||..|+| .|.|.++...
T Consensus 9 g~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~ 51 (150)
T 2i2y_A 9 GKTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKT 51 (150)
T ss_dssp CSSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTE
T ss_pred cccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCc
Confidence 4466799999999999999999999 9999999 9999987653
No 220
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=96.69 E-value=0.0013 Score=48.80 Aligned_cols=36 Identities=11% Similarity=0.112 Sum_probs=28.5
Q ss_pred EEEEeeCCCCCCcccEEEEEeecHHHHHHHHHHhCCce
Q 028130 78 ECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSV 115 (213)
Q Consensus 78 ~~~i~~~~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~ 115 (213)
.+.|+++. .+.+|||||+|.+.++|++||+.+++..
T Consensus 2 ~~kl~ln~--~~~~G~~fV~f~~~~~A~~al~~~~~~~ 37 (158)
T 2kn4_A 2 QYKLILNG--KTLKGETTTEAVDAATAEKVFKQYANDN 37 (158)
T ss_dssp EEEEEEEC--SSCEEEEEEECSSHHHHHHHHHHHHHHH
T ss_pred cEEEEecC--ccccchhHHHHHHHHhHHHHHHhhcccC
Confidence 35555553 3578999999999999999999887643
No 221
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=93.94 E-value=0.14 Score=45.58 Aligned_cols=56 Identities=21% Similarity=0.314 Sum_probs=45.0
Q ss_pred CCeEEEeCCCCCCcHHHHHHHHccCCCeEEEEEeeCCCCCCcccEEEEEeecHHHHHHHHHHhCC
Q 028130 49 GNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNR 113 (213)
Q Consensus 49 ~~~v~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~Ai~~l~g 113 (213)
...++|+ +|..+...+|.++|+.||.| .|.++.+ ..|||.|.+.+.|..++..+..
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~widd-------t~a~V~~~~~~~a~~~l~~~~~ 495 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWIDD-------TSAFVSLSQPEQVQIAVNTSKY 495 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECSS-------SEEEEECSCHHHHHHHHHHHTT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEcC-------CeEEEEECCHHHHHHHHHHHHh
Confidence 3466666 99999999999999999965 4444433 3899999999999999998853
No 222
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=93.06 E-value=0.31 Score=31.32 Aligned_cols=68 Identities=15% Similarity=0.326 Sum_probs=42.8
Q ss_pred eEEEeC-CCCCCcHHHHHHHHccCC-----CeEEEEEeeCCCCCCcccEEEEEeecHHHHHHHHHHhCCceeCCeeeEEE
Q 028130 51 NLYVTG-LSTRVTNADLEKFFGGEG-----KVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLITVE 124 (213)
Q Consensus 51 ~v~V~n-Lp~~~t~~~L~~~F~~~G-----~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~ 124 (213)
+|||.. -...+...+|..++..-+ .|-.|.|.. .|.||+... +.|+.+++.|++..+.|..|.|+
T Consensus 2 ~~~i~~Grk~~~~p~~ivg~i~~~~gi~~~~IG~I~i~d--------~~s~v~v~~-~~~~~~~~~l~~~~i~g~~~~v~ 72 (76)
T 2g0c_A 2 KLYFNGGKKKKIRAVDFVGTIAKIDGVSADDIGIITIMD--------NASYVEILN-GKGPHVLKVMKNTTVKGKQLKVN 72 (76)
T ss_dssp EEEESCCCC----CHHHHHHHHTSTTCCGGGEEEEEECS--------SCEEEEECT-TCHHHHHHHHTTCCC---CCCEE
T ss_pred EEEEeCCCccCCCHHHHHHHHHHccCCChhhccEEEEeC--------CcEEEEECH-HHHHHHHHHhccccCcCceEEEE
Confidence 566632 234566677777776544 345566643 389999865 56888999999999999999998
Q ss_pred ecc
Q 028130 125 KAK 127 (213)
Q Consensus 125 ~a~ 127 (213)
.++
T Consensus 73 ~~~ 75 (76)
T 2g0c_A 73 KAN 75 (76)
T ss_dssp ECC
T ss_pred ECC
Confidence 764
No 223
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=92.79 E-value=0.81 Score=30.80 Aligned_cols=72 Identities=13% Similarity=0.186 Sum_probs=53.9
Q ss_pred CCCCCCeEEEeCCCCCCcHHHHHHHHccCCCeEEEEEeeCCCCCCcccEEEEEeecHHHHHHHHHHhCCc-------eeC
Q 028130 45 AANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRS-------VLE 117 (213)
Q Consensus 45 ~~~~~~~v~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~-------~i~ 117 (213)
....++-|-|-|+|..+-..++--.....|---.|..+. |-|.|.|.+.++..-||..|-+. +|.
T Consensus 8 sikqnclikiinipqgtlkaevvlavrhlgyefycdyid--------gqamirfqnsdeqrlaiqkllnhnnnklqieir 79 (129)
T 4eyt_A 8 SIKQNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYID--------GQAMIRFQNSDEQRLAIQKLLNHNNNKLQIEIR 79 (129)
T ss_dssp --CCSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEECS--------SCEEEEESSHHHHHHHHHHHEETTTTEEEEEET
T ss_pred hhhhCcEEEEEecCCCceeeeeEEeehhcCeeEeeeeec--------CeeEEEecCChHHHHHHHHHHhcCCCEEEEEEc
Confidence 456778899999999999888877777778767777653 68999999999999999877322 345
Q ss_pred CeeeEEE
Q 028130 118 GRLITVE 124 (213)
Q Consensus 118 g~~i~V~ 124 (213)
|..+.|-
T Consensus 80 gqicdvi 86 (129)
T 4eyt_A 80 GQICDVI 86 (129)
T ss_dssp TEEEEEE
T ss_pred ceeeeee
Confidence 6555543
No 224
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=84.70 E-value=4.3 Score=35.08 Aligned_cols=24 Identities=13% Similarity=0.124 Sum_probs=15.5
Q ss_pred EeecHHHHHHHHHHhCCceeCCeeeE
Q 028130 97 TMETVEGADRCIKYLNRSVLEGRLIT 122 (213)
Q Consensus 97 ~f~~~~~a~~Ai~~l~g~~i~g~~i~ 122 (213)
.|-..++.+.|..+|.. |+|..|.
T Consensus 147 aFV~F~~~e~A~~Ai~~--lng~~i~ 170 (437)
T 3pgw_S 147 AFIEYEHERDMHSAYKH--ADGKKID 170 (437)
T ss_pred EEEeeccHHHHHHHHHH--cCCCEEC
Confidence 45556677777777753 5776664
No 225
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=82.44 E-value=0.15 Score=35.52 Aligned_cols=19 Identities=21% Similarity=0.317 Sum_probs=0.0
Q ss_pred CCCCeEEEeCCCCCCcHHH
Q 028130 47 NPGNNLYVTGLSTRVTNAD 65 (213)
Q Consensus 47 ~~~~~v~V~nLp~~~t~~~ 65 (213)
...++|||+|||+.+|++.
T Consensus 95 ~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 95 KEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp -------------------
T ss_pred CCCCceEeCCCCCCccccc
Confidence 3456799999999998763
No 226
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=79.66 E-value=5.6 Score=24.45 Aligned_cols=55 Identities=15% Similarity=0.061 Sum_probs=41.8
Q ss_pred CeEEEeCCCCCCcHHHHHHHHccCCCeEEEEEeeCCCCCCcccEEEEEeecHHHHHHHHHHh
Q 028130 50 NNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYL 111 (213)
Q Consensus 50 ~~v~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~Ai~~l 111 (213)
.++.|.++.-..-...|+..+.+ ..|..+.+.... +.+.|+|.+.++...+|+.+
T Consensus 7 ~~~~v~gm~C~~C~~~ie~~l~~-~gv~~~~v~~~~------~~~~v~~~~~~~i~~~i~~~ 61 (73)
T 3fry_A 7 IVLELSGLSCHHCVARVKKALEE-AGAKVEKVDLNE------AVVAGNKEDVDKYIKAVEAA 61 (73)
T ss_dssp EEEEEESSBCGGGHHHHHHHHHH-TTCEEEEECSSE------EEEEEEGGGHHHHHHHHHHT
T ss_pred EEEEECCCCCHHHHHHHHHHhcc-CCcEEEEEEccC------CEEEEEECCHHHHHHHHHHc
Confidence 46889999887778889999999 888877775432 46788887666677777743
No 227
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=79.17 E-value=9 Score=28.82 Aligned_cols=57 Identities=14% Similarity=0.108 Sum_probs=37.1
Q ss_pred CeEEEeCCCC-C--------CcHHHHHHHH--ccCCCeEEEEEeeCCCCCCcccEEEEEeec-HHHHHHHHH
Q 028130 50 NNLYVTGLST-R--------VTNADLEKFF--GGEGKVTECHLVTDPRTRESCGFAFVTMET-VEGADRCIK 109 (213)
Q Consensus 50 ~~v~V~nLp~-~--------~t~~~L~~~F--~~~G~i~~~~i~~~~~t~~~~g~afV~f~~-~~~a~~Ai~ 109 (213)
.++.|.|+|. . ....+|.+.| ..|.++... .+..+ ....|+|+|+|.. ..-...|+.
T Consensus 13 wmgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~kv~-~l~~~--~Gh~g~aIv~F~~dw~Gf~~A~~ 81 (172)
T 4e8u_A 13 WKGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTRVR-PLWNY--LGHSGTAIVEFNKDWNGLHNGLL 81 (172)
T ss_dssp CEEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSEEE-EEECS--SBEEEEEEEECCSSHHHHHHHHH
T ss_pred CEEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCceeE-ecccC--CCCceeEEEEecCChHHHHHHHH
Confidence 4677889886 2 3347899977 999887644 34443 2356899999975 333344443
No 228
>4a4j_A Pacszia, cation-transporting ATPase PACS; hydrolase, copper homeostasis, zinc homeostasis, ATX1, metal-transporting atpases; 1.25A {Synechocystis} PDB: 4a48_A 2gcf_A 2xmw_A
Probab=71.31 E-value=12 Score=22.19 Aligned_cols=55 Identities=15% Similarity=0.170 Sum_probs=39.5
Q ss_pred CeEEEeCCCCCCcHHHHHHHHccCCCeEEEEEeeCCCCCCcccEEEEEeec---HHHHHHHHHH
Q 028130 50 NNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMET---VEGADRCIKY 110 (213)
Q Consensus 50 ~~v~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~t~~~~g~afV~f~~---~~~a~~Ai~~ 110 (213)
.++.|.|+.-..-...|+..+.+...|..+.+.... +-+.|+|.. .++..++|+.
T Consensus 4 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~------~~~~v~~~~~~~~~~i~~~i~~ 61 (69)
T 4a4j_A 4 INLQLEGMDCTSCASSIERAIAKVPGVQSCQVNFAL------EQAVVSYHGETTPQILTDAVER 61 (69)
T ss_dssp EEEEEESCCSHHHHHHHHHHHHTSTTEEEEEEETTT------TEEEEEECTTCCHHHHHHHHHH
T ss_pred EEEEECCeecHHHHHHHHHHHhcCCCeEEEEEEecC------CEEEEEECCCCCHHHHHHHHHH
Confidence 367888888777778899999998888888776543 477888853 3445555553
No 229
>3dxs_X Copper-transporting ATPase RAN1; CXXC motif, ferredoxin-like fold, ATP- binding, ethylene signaling pathway, hydrolase, ION transport; 1.70A {Arabidopsis thaliana} SCOP: d.58.17.0
Probab=70.35 E-value=15 Score=22.17 Aligned_cols=56 Identities=16% Similarity=0.081 Sum_probs=41.4
Q ss_pred CeEEEeCCCCCCcHHHHHHHHccCCCeEEEEEeeCCCCCCcccEEEEEee----cHHHHHHHHHHh
Q 028130 50 NNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTME----TVEGADRCIKYL 111 (213)
Q Consensus 50 ~~v~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~t~~~~g~afV~f~----~~~~a~~Ai~~l 111 (213)
.++.|.|+.-..-...|+..+.+...|..+.+.... +-+.|+|. +.++...+|+.+
T Consensus 4 ~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~------~~~~v~~~~~~~~~~~i~~~i~~~ 63 (74)
T 3dxs_X 4 IQVGVTGMTCAACSNSVEAALMNVNGVFKASVALLQ------NRADVVFDPNLVKEEDIKEEIEDA 63 (74)
T ss_dssp EEEEEECCCSHHHHHHHHHHHHTSTTEEEEEEEGGG------TEEEEEECTTTCCHHHHHHHHHHH
T ss_pred EEEEECCcCCHHHHHHHHHHHhcCCCEEEEEEEecC------CEEEEEECCCCCCHHHHHHHHHHC
Confidence 367888888777778899999998888877776543 47889885 455667777654
No 230
>2cu1_A Mitogen-activated protein kinase kinase kinase 2; PB1 domain, MAPK/ERK kinase kinase 2, MEK kinase 2, MEKK 2, signaling protein; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=66.04 E-value=16 Score=24.84 Aligned_cols=65 Identities=15% Similarity=0.218 Sum_probs=43.8
Q ss_pred CCCCCCcHHHHHHHH-ccCCCeEEEEEeeCCCCCCcccEEEEEeecHHHHHHHHHHhCCceeCCeeeEEEecccC
Q 028130 56 GLSTRVTNADLEKFF-GGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLITVEKAKRS 129 (213)
Q Consensus 56 nLp~~~t~~~L~~~F-~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~a~~~ 129 (213)
.++..+.-++|+... ..||.-..+.+..+ -+.|-..+.++..+||+.|+-.. .-+.|+|-+..++
T Consensus 23 ~f~RPv~f~eL~~Kv~~~fGq~ldL~y~n~--------EllIpl~sQeDLDkaIellDrss-~~kSLrIlL~~~~ 88 (103)
T 2cu1_A 23 QFPRPVKLEDLRSKAKIAFGQSMDLHYTNN--------ELVIPLTTQDDLDKAVELLDRSI-HMKSLKILLVING 88 (103)
T ss_dssp EEESSCCHHHHHHHHHHHHSSCEEEEECSS--------SSCEECCSHHHHHHHHHHHHHCS-SCCSEEEEEEECC
T ss_pred eccCCccHHHHHHHHHHHhCCeeeEEEecc--------eEEEeccCHHHHHHHHHHHccCC-cccceEEEEecCC
Confidence 466778878876554 45888777776622 47888999999999999876542 2333455444433
No 231
>1kvi_A Copper-transporting ATPase 1; menkes, Cu-protein, hydrolase; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 1kvj_A
Probab=63.65 E-value=22 Score=21.49 Aligned_cols=58 Identities=12% Similarity=0.139 Sum_probs=40.8
Q ss_pred CCCeEEEeCCCCCCcHHHHHHHHccCCCeEEEEEeeCCCCCCcccEEEEEeec----HHHHHHHHHHh
Q 028130 48 PGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMET----VEGADRCIKYL 111 (213)
Q Consensus 48 ~~~~v~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~t~~~~g~afV~f~~----~~~a~~Ai~~l 111 (213)
...++.|.++.-..-...|+..+.....|..+.+.... +.+.|+|.. .+....+|+.+
T Consensus 8 ~~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~------~~~~v~~~~~~~~~~~i~~~i~~~ 69 (79)
T 1kvi_A 8 NSVTISVEGMTCNSCVWTIEQQIGKVNGVHHIKVSLEE------KNATIIYDPKLQTPKTLQEAIDDM 69 (79)
T ss_dssp EEEEEEECCCCSTTTHHHHHHHHHHSSSCCCEEEEGGG------TEEEEEECTTTCCHHHHHHHHHHH
T ss_pred EEEEEEECCccCHHHHHHHHHHHhcCCCeEEEEEEccC------CEEEEEECCCCCCHHHHHHHHHHC
Confidence 34568888998877788899999888777766665432 478888864 34556666654
No 232
>1yg0_A COP associated protein; open-faced beta-sandwich, missing C-terminal beta-sheet, Met transport; NMR {Helicobacter pylori}
Probab=59.83 E-value=22 Score=20.28 Aligned_cols=55 Identities=13% Similarity=0.148 Sum_probs=37.2
Q ss_pred eEEEeCCCCCCcHHHHHHHHccCCCeEEEEEeeCCCCCCcccEEEEEeec---HHHHHHHHHHh
Q 028130 51 NLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMET---VEGADRCIKYL 111 (213)
Q Consensus 51 ~v~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~t~~~~g~afV~f~~---~~~a~~Ai~~l 111 (213)
++.|.|+.-..-...|+..+.+...|..+.+.... +.+.|+|.. .+...++|+.+
T Consensus 4 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~------~~~~v~~~~~~~~~~i~~~i~~~ 61 (66)
T 1yg0_A 4 TFQVPSITCNHCVDKIEKFVGEIEGVSFIDVSVEK------KSVVVEFDAPATQDLIKEALLDA 61 (66)
T ss_dssp EECCTTCSCSHHHHHHHHHHTTSSSEEEEEEETTT------TEEEEEECTTCCHHHHHHHHHHH
T ss_pred EEEECCcccHHHHHHHHHHHhcCCCceEEEEEcCC------CEEEEEECCCCCHHHHHHHHHHc
Confidence 45677777666667888999988778777775542 477888863 34455555543
No 233
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=58.25 E-value=20 Score=23.75 Aligned_cols=34 Identities=24% Similarity=0.223 Sum_probs=25.2
Q ss_pred eEEEEEeeCCCCCCcccEEEEEeecHHHHHHHHHHhCCc
Q 028130 76 VTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRS 114 (213)
Q Consensus 76 i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~ 114 (213)
|..+.++.. ..||.||++...++...+|..+.|.
T Consensus 40 i~~v~vP~~-----fPGYVfVe~~~~~~~~~~I~~t~gV 73 (92)
T 3lpe_A 40 VYSILASES-----LKGYVLVEAETKGDVEELIKGMPRV 73 (92)
T ss_dssp EEEEEECTT-----STTEEEEEESSHHHHHHHHTTCTTE
T ss_pred EEEEEEecc-----cCCEEEEEEecchhHHHHHHCCCCc
Confidence 555555432 5699999999988888888777665
No 234
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=56.68 E-value=36 Score=22.36 Aligned_cols=58 Identities=21% Similarity=0.214 Sum_probs=39.0
Q ss_pred eEEEeCCCCCCcHHHHHHHHcc-CC-CeEEEEEeeCCCCCCcccEEEEEeecHHHHHHHHHHh
Q 028130 51 NLYVTGLSTRVTNADLEKFFGG-EG-KVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYL 111 (213)
Q Consensus 51 ~v~V~nLp~~~t~~~L~~~F~~-~G-~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~Ai~~l 111 (213)
..|+..+...++..+|++.+++ |+ .|..|..+..+. + .--|||.+....+|.+....+
T Consensus 24 n~~~F~Vd~~AnK~qIK~AVe~lf~VkV~~VNTl~~~~-~--~KKA~V~L~~~~~a~dva~ki 83 (86)
T 3j21_T 24 NKLTFIVDRRATKQDIKRAVEEIFNVKVEKVNTLITPR-G--EKKAYVKLKPEYSASEVAARL 83 (86)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHHTTCCEEEEEEEECTT-S--CEEEEEEECTTSCHHHHHHHS
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEeEcCC-C--ceEEEEEcCCCCcHHHHHHhh
Confidence 3455567888999999988887 54 456665544331 1 135999999888877765543
No 235
>2kt2_A Mercuric reductase; nmera, MERA, HMA domain, mercuric resist metal-binding, oxidoreductase; NMR {Pseudomonas aeruginosa} PDB: 2kt3_A
Probab=55.48 E-value=28 Score=20.16 Aligned_cols=53 Identities=13% Similarity=0.163 Sum_probs=37.3
Q ss_pred eEEEeCCCCCCcHHHHHHHHccCCCeEEEEEeeCCCCCCcccEEEEEeecH---HHHHHHHH
Q 028130 51 NLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETV---EGADRCIK 109 (213)
Q Consensus 51 ~v~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~---~~a~~Ai~ 109 (213)
++.|.++.-..-...|+..+.+...|..+.+.... +.+.|.|... +....+|+
T Consensus 3 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~------~~~~v~~~~~~~~~~i~~~i~ 58 (69)
T 2kt2_A 3 HLKITGMTCDSCAAHVKEALEKVPGVQSALVSYPK------GTAQLAIVPGTSPDALTAAVA 58 (69)
T ss_dssp CEEEESSCSTHHHHHHHHHHHHSTTEEEEEEETTT------TEEEEEECTTSCHHHHHHHHH
T ss_pred EEEECCcccHHHHHHHHHHHHcCCCeeEEEEEccC------CEEEEEECCCCCHHHHHHHHH
Confidence 57788888766677888999888778887776543 4778888643 34445554
No 236
>2g9o_A Copper-transporting ATPase 1; menkes disease, solution structure, structural genomics, structural proteomics in europe, spine, hydrolase; NMR {Homo sapiens} PDB: 2ga7_A
Probab=55.37 E-value=30 Score=21.95 Aligned_cols=56 Identities=13% Similarity=0.200 Sum_probs=39.8
Q ss_pred CeEEEeCCCCCCcHHHHHHHHccCCCeEEEEEeeCCCCCCcccEEEEEeec----HHHHHHHHHHh
Q 028130 50 NNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMET----VEGADRCIKYL 111 (213)
Q Consensus 50 ~~v~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~t~~~~g~afV~f~~----~~~a~~Ai~~l 111 (213)
.+|.|.++....-...|+..+.+.-.|..+.+.... +.+.|.|.. .++..++|+.+
T Consensus 5 ~~l~v~Gm~C~~C~~~Ie~~L~~~~GV~~v~v~l~~------~~~~V~~~~~~~~~~~i~~~i~~~ 64 (90)
T 2g9o_A 5 ATFIIDGMHCKSCVSNIESTLSALQYVSSIVVSLEN------RSAIVVYNASSVTPESLRKAIEAV 64 (90)
T ss_dssp EEEEEESCCHHHHHHHHHHHHTTCTTEEEEEEETTT------TEEEEEECCSSCCTHHHHHHHHTT
T ss_pred EEEEECCcCCHHHHHHHHHHHHcCCCeeEEEEEccC------CEEEEEECCCCCCHHHHHHHHHhc
Confidence 357788887666667799999998888888776543 478888863 34556666644
No 237
>2xmw_A PACS-N, cation-transporting ATPase PACS; hydrolase, Cu(I)-binding, trafficking; 1.80A {Synechocystis SP} PDB: 2gcf_A
Probab=55.20 E-value=28 Score=20.12 Aligned_cols=55 Identities=15% Similarity=0.180 Sum_probs=37.8
Q ss_pred eEEEeCCCCCCcHHHHHHHHccCCCeEEEEEeeCCCCCCcccEEEEEeec---HHHHHHHHHHh
Q 028130 51 NLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMET---VEGADRCIKYL 111 (213)
Q Consensus 51 ~v~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~t~~~~g~afV~f~~---~~~a~~Ai~~l 111 (213)
++.|.++.-..-...|+..+.+...|..+.+.... +.+.|.|.. .+....+|+.+
T Consensus 6 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~------~~~~v~~~~~~~~~~i~~~i~~~ 63 (71)
T 2xmw_A 6 NLQLEGMRCAACASSIERAIAKVPGVQSCQVNFAL------EQAVVSYHGETTPQILTDAVERA 63 (71)
T ss_dssp EEEEECCCSHHHHHHHHHHHHTSTTEEEEEEETTT------TEEEEEEC---CHHHHHHHHHHH
T ss_pred EEEECCcccHHHHHHHHHHHhcCCCeEEEEEEccC------CEEEEEECCCCCHHHHHHHHHHc
Confidence 57788887766667788999988888887776543 478888864 34445555543
No 238
>1aw0_A Menkes copper-transporting ATPase; copper-binding domain, hydrolase; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 2aw0_A
Probab=53.30 E-value=31 Score=20.04 Aligned_cols=55 Identities=11% Similarity=0.128 Sum_probs=37.5
Q ss_pred eEEEeCCCCCCcHHHHHHHHccCCCeEEEEEeeCCCCCCcccEEEEEeec----HHHHHHHHHHh
Q 028130 51 NLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMET----VEGADRCIKYL 111 (213)
Q Consensus 51 ~v~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~t~~~~g~afV~f~~----~~~a~~Ai~~l 111 (213)
++.|.++.-..-...|+..+.+...|..+.+.... +.+.|.|.. .+....+|+.+
T Consensus 6 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~------~~~~v~~~~~~~~~~~i~~~i~~~ 64 (72)
T 1aw0_A 6 VINIDGMTCNSCVQSIEGVISKKPGVKSIRVSLAN------SNGTVEYDPLLTSPETLRGAIEDM 64 (72)
T ss_dssp EEEEECCCHHHHHHHHHHHHHTSTTCCCEEEETTT------TEEEEEECTTTCCHHHHHHHHHHH
T ss_pred EEEECCeecHHHHHHHHHHHhcCCCeEEEEEEccC------CEEEEEECCCcCCHHHHHHHHHHC
Confidence 57788887655567788888888777777665432 478888863 34556666644
No 239
>2l3m_A Copper-ION-binding protein; structural genomics, center for structural genomics of infec diseases, csgid, metal binding protein; NMR {Bacillus anthracis}
Probab=52.75 E-value=32 Score=19.98 Aligned_cols=56 Identities=18% Similarity=0.138 Sum_probs=38.4
Q ss_pred CeEEEeCCCCCCcHHHHHHHHccCCCeEEEEEeeCCCCCCcccEEEEEeec----HHHHHHHHHHh
Q 028130 50 NNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMET----VEGADRCIKYL 111 (213)
Q Consensus 50 ~~v~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~t~~~~g~afV~f~~----~~~a~~Ai~~l 111 (213)
.++.|.++.-..-...|+..+.+...|..+.+.... +.+.|.|.. .+....+|..+
T Consensus 7 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~------~~~~v~~~~~~~~~~~i~~~i~~~ 66 (71)
T 2l3m_A 7 LTLQVEGMSCGHCVNAIESSVKELNGVEQVKVQLAE------GTVEVTIDSSVVTLKDIVAVIEDQ 66 (71)
T ss_dssp EEEEEECCCSHHHHHHHHHHHHTSTTEEEEEEETTT------TEEEEEEETTTSCHHHHHHHHHHT
T ss_pred EEEEECCccCHHHHHHHHHHHHcCCCeEEEEEEecC------CEEEEEECCCCCCHHHHHHHHHHc
Confidence 357788887766667788899988778777775532 478888863 34455556543
No 240
>1q8l_A Copper-transporting ATPase 1; metal binding protein; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 1s6o_A 1s6u_A
Probab=52.21 E-value=39 Score=20.82 Aligned_cols=57 Identities=18% Similarity=0.189 Sum_probs=40.6
Q ss_pred CCeEEEeCCCCCCcHHHHHHHHccCCCeEEEEEeeCCCCCCcccEEEEEeec----HHHHHHHHHHh
Q 028130 49 GNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMET----VEGADRCIKYL 111 (213)
Q Consensus 49 ~~~v~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~t~~~~g~afV~f~~----~~~a~~Ai~~l 111 (213)
..+|.|.++.-..-...|+..+.+...|..+.+.... +.+.|+|.. .+....+|+.+
T Consensus 10 ~~~~~v~gm~C~~C~~~ie~~l~~~~GV~~~~v~~~~------~~~~v~~~~~~~~~~~i~~~i~~~ 70 (84)
T 1q8l_A 10 VLKMKVEGMTCHSCTSTIEGKIGKLQGVQRIKVSLDN------QEATIVYQPHLISVEEMKKQIEAM 70 (84)
T ss_dssp EEEEEECCTTTCSSCHHHHHHHHTCTTEEEEEECSTT------TEEEEEECTTTCCHHHHHHHHHHT
T ss_pred EEEEEECCcccHHHHHHHHHHHHcCCCeEEEEEEecC------CEEEEEECCCCCCHHHHHHHHHHc
Confidence 3467888888776677799999998888888775543 478888853 34556666644
No 241
>1y3j_A Copper-transporting ATPase 1; ferrodoxin-like fold, beta-alpha-beta-BETA-alpha-beta structure, structural proteomics in europe, spine; NMR {Homo sapiens} PDB: 1y3k_A
Probab=51.65 E-value=36 Score=20.33 Aligned_cols=55 Identities=20% Similarity=0.164 Sum_probs=38.1
Q ss_pred eEEEeCCCCCCcHHHHHHHHccCCCeEEEEEeeCCCCCCcccEEEEEeec----HHHHHHHHHHh
Q 028130 51 NLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMET----VEGADRCIKYL 111 (213)
Q Consensus 51 ~v~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~t~~~~g~afV~f~~----~~~a~~Ai~~l 111 (213)
++.|.++.-..-...|+..+.+...|..+.+.... +.+.|.|.. .+....+|+.+
T Consensus 6 ~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~------~~~~v~~~~~~~~~~~i~~~i~~~ 64 (77)
T 1y3j_A 6 YIQVTGMTCASCVANIERNLRREEGIYSILVALMA------GKAEVRYNPAVIQPPMIAEFIREL 64 (77)
T ss_dssp EEEESCGGGCSHHHHHHHHHTTSSSEEECCCBTTT------TBEEEEECTTTSCHHHHHHHHHHH
T ss_pred EEEECCeeCHHHHHHHHHHHhcCCCeEEEEEEecC------CEEEEEECCCCCCHHHHHHHHHHc
Confidence 57788888777778899999988777766654332 467888863 34556666654
No 242
>2lfv_A Protein DAMX; cell division, peptidoglycan binding domain, murein binding bacterial cell division protein, RNP fold, RNP domain, cell; NMR {Escherichia coli}
Probab=56.52 E-value=3.2 Score=28.68 Aligned_cols=62 Identities=13% Similarity=0.148 Sum_probs=37.5
Q ss_pred CCeEEEeCCCCCCcHHHHHHHHccCCCeEEEEEeeCCCCCCcccEE--EEEeecHHHHHHHHHHhCCce
Q 028130 49 GNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFA--FVTMETVEGADRCIKYLNRSV 115 (213)
Q Consensus 49 ~~~v~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~t~~~~g~a--fV~f~~~~~a~~Ai~~l~g~~ 115 (213)
..+|-|..+ ..+++|..|..+.+ +..+.+......|+. -|. +-.|.+.++|.+|+..|....
T Consensus 25 ~YTLQL~a~---~~~~~l~~f~~~~~-l~~~~v~~t~rnGk~-WyvVlyG~Y~s~~~A~~A~~~LP~~l 88 (106)
T 2lfv_A 25 HYTLQLSSS---SNYDNLNGWAKKEN-LKNYVVYETTRNGQP-WYVLVSGVYASKEEAKKAVSTLPADV 88 (106)
Confidence 456665544 34566777777776 334544433223332 232 347889999999999887654
No 243
>1cpz_A Protein (COPZ); copper chaperone, metal transport, gene regulation; NMR {Enterococcus hirae} SCOP: d.58.17.1
Probab=50.58 E-value=33 Score=19.57 Aligned_cols=54 Identities=19% Similarity=0.211 Sum_probs=38.4
Q ss_pred CeEEEeCCCCCCcHHHHHHHHccCCCeEEEEEeeCCCCCCcccEEEEEeec----HHHHHHHHH
Q 028130 50 NNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMET----VEGADRCIK 109 (213)
Q Consensus 50 ~~v~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~t~~~~g~afV~f~~----~~~a~~Ai~ 109 (213)
.++.|.++.-..-...|+..+.+...|..+.+.... +.+.|+|.. .+....+|+
T Consensus 2 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~------~~~~v~~~~~~~~~~~i~~~i~ 59 (68)
T 1cpz_A 2 QEFSVKGMSCNHCVARIEEAVGRISGVKKVKVQLKK------EKAVVKFDEANVQATEICQAIN 59 (68)
T ss_dssp CEEEESCCCSSSHHHHHHHHHHTSTTEEEEEEETTT------TEEEEEECTTTCCHHHHHHHHH
T ss_pred EEEEECCeeCHHHHHHHHHHHHcCCCeEEEEEEecC------CEEEEEECCCCCCHHHHHHHHH
Confidence 367888988777778899999998778777775532 478888863 344445554
No 244
>1p6t_A Potential copper-transporting ATPase; COPA, P-type ATPase, water-soluble region, beta-alpha-beta- beta-alpha-beta fold; NMR {Bacillus subtilis} SCOP: d.58.17.1 d.58.17.1 PDB: 2rml_A
Probab=49.96 E-value=60 Score=22.34 Aligned_cols=56 Identities=13% Similarity=0.141 Sum_probs=39.2
Q ss_pred CeEEEeCCCCCCcHHHHHHHHccCCCeEEEEEeeCCCCCCcccEEEEEee----cHHHHHHHHHHh
Q 028130 50 NNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTME----TVEGADRCIKYL 111 (213)
Q Consensus 50 ~~v~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~t~~~~g~afV~f~----~~~~a~~Ai~~l 111 (213)
..|.|.++.-..-...|+..+.+...|..+.+.... +.+.|+|. +.++..++|+.+
T Consensus 76 ~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~------~~~~v~~~~~~~~~~~i~~~i~~~ 135 (151)
T 1p6t_A 76 AEFDIEGMTCAACANRIEKRLNKIEGVANAPVNFAL------ETVTVEYNPKEASVSDLKEAVDKL 135 (151)
T ss_dssp EEEEESSCCSSSHHHHHHHHHTTSSSEEECCEETTT------TEEEEEECTTTCCHHHHHHHHHHH
T ss_pred cEEEecCCCCHHHHHHHHHHHhcCCCceEEEEEccC------CEEEEEECCCCCCHHHHHHHHHHc
Confidence 357788888777778888888888777776665432 47888886 345566666654
No 245
>2npt_B Mitogen-activated protein kinase kinase kinase 2; MAP2K5, MEK5, MKK PRKMK5, MAP kinase kinase 5, PHOX, PHOX-domain; 1.75A {Homo sapiens} SCOP: d.15.2.2
Probab=48.53 E-value=34 Score=23.01 Aligned_cols=51 Identities=20% Similarity=0.296 Sum_probs=38.7
Q ss_pred CCCCCCcHHHHHHHHc-cCCCeEEEEEeeCCCCCCcccEEEEEeecHHHHHHHHHHhCCc
Q 028130 56 GLSTRVTNADLEKFFG-GEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRS 114 (213)
Q Consensus 56 nLp~~~t~~~L~~~F~-~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~ 114 (213)
-++.-+.-++|+.... .||.-.++.++.+ -..|-..+.++..+||+.|+-.
T Consensus 35 ~f~RPv~f~el~~kv~~afGq~ldl~y~nn--------EL~iPL~~Q~DLDkAvelLDrs 86 (100)
T 2npt_B 35 QFPRPVKLEDLRSKAKIAFGQSMDLHYTNN--------ELVIPLTTQDDLDKAVELLDRS 86 (100)
T ss_dssp EECSSCCHHHHHHHHHHHHTSCEEEEEEET--------TEEEECCCHHHHHHHHHHHHHC
T ss_pred ecCCCccHHHHHHHHHHHhCCeeeeEEecc--------eeEEecccHHHHHHHHHHhccC
Confidence 4567778788766554 6898888887743 4678889999999999977543
No 246
>2ofg_X Zinc-transporting ATPase; ferredoxin-like fold, beta-alpha-beta-BETA-alpha-beta, struc genomics, hydrolase, membrane protein; NMR {Synechocystis SP} PDB: 2ofh_X
Probab=48.37 E-value=57 Score=21.63 Aligned_cols=56 Identities=18% Similarity=0.159 Sum_probs=40.2
Q ss_pred CeEEEeCCCCCCcHHHHHHHHccCCCeEEEEEeeCCCCCCcccEEEEEeec----HHHHHHHHHHh
Q 028130 50 NNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMET----VEGADRCIKYL 111 (213)
Q Consensus 50 ~~v~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~t~~~~g~afV~f~~----~~~a~~Ai~~l 111 (213)
.+|.|.++....-...|+..+...-.|..+.+.... +.+.|+|.. .+....+|..+
T Consensus 10 ~~l~v~Gm~C~~Ca~~Ie~~L~~~~GV~~v~v~~~~------~~~~V~~~~~~~~~~~i~~~i~~~ 69 (111)
T 2ofg_X 10 QQMQVGGMDCTSCKLKIEGSLERLKGVAEASVTVAT------GRLTVTYDPKQVSEITIQERIAAL 69 (111)
T ss_dssp EEEEESCCCGGGTHHHHHHHHTTSSSEEEEEEETTT------TEEEEEECTTTCSHHHHHHHHHTT
T ss_pred EEEEECCcCCHHHHHHHHHHHHcCCCeeEEEEECCC------CEEEEEECCCCCCHHHHHHHHHHc
Confidence 357788888777778899999998778887776543 478888874 34455556533
No 247
>1osd_A MERP, hypothetical protein MERP; mercury resistance, metal binding protein, perisplasm, structural genomics; 2.00A {Cupriavidus metallidurans} SCOP: d.58.17.1 PDB: 1afi_A 1afj_A 2hqi_A
Probab=47.98 E-value=39 Score=19.58 Aligned_cols=55 Identities=16% Similarity=0.206 Sum_probs=39.2
Q ss_pred eEEEeCCCCCCcHHHHHHHHccCCCeEEEEEeeCCCCCCcccEEEEEeec----HHHHHHHHHHh
Q 028130 51 NLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMET----VEGADRCIKYL 111 (213)
Q Consensus 51 ~v~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~t~~~~g~afV~f~~----~~~a~~Ai~~l 111 (213)
++.|.++....-...|+..+.....|..+.+.... +.+.|.|.. .+....+|+.+
T Consensus 6 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~------~~~~v~~~~~~~~~~~i~~~i~~~ 64 (72)
T 1osd_A 6 TLSVPGMTCSACPITVKKAISKVEGVSKVDVTFET------RQAVVTFDDAKTSVQKLTKATADA 64 (72)
T ss_dssp EEECTTCCSTTHHHHHHHHHHTSTTEEEEEEETTT------TEEEEEEETTTCCHHHHHHHHHHT
T ss_pred EEEECCeEcHHHHHHHHHHHhcCCCeEEEEEEecC------CEEEEEECCCCCCHHHHHHHHHhc
Confidence 57788888777778899999998888877776532 478888864 34455666543
No 248
>3cjk_B Copper-transporting ATPase 1; HAH1, ATP7B, menkes disease, metal homeostasis, chaperone, ION transport, metal- binding, alternative splicing; 1.80A {Homo sapiens} PDB: 2k1r_A
Probab=47.92 E-value=41 Score=19.83 Aligned_cols=55 Identities=13% Similarity=0.163 Sum_probs=38.3
Q ss_pred eEEEeCCCCCCcHHHHHHHHccCCCeEEEEEeeCCCCCCcccEEEEEeec----HHHHHHHHHHh
Q 028130 51 NLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMET----VEGADRCIKYL 111 (213)
Q Consensus 51 ~v~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~t~~~~g~afV~f~~----~~~a~~Ai~~l 111 (213)
++.|.++....-...|+..+.+.-.|..+.+.... +.+.|.|.. .+....+|+.+
T Consensus 5 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~------~~~~v~~~~~~~~~~~i~~~i~~~ 63 (75)
T 3cjk_B 5 TISVEGMTCNSCVWTIEQQIGKVNGVHHIKVSLEE------KNATIIYDPKLQTPKTLQEAIDDM 63 (75)
T ss_dssp EEEECCCCSHHHHHHHHHHHHTSTTEEEEEEETTT------TEEEEEECTTTCCHHHHHHHHHHT
T ss_pred EEEECCccCHHHHHHHHHHHhcCCCeEEEEEEecC------CEEEEEECCCCCCHHHHHHHHHHc
Confidence 56788887665667788999988888877776543 478888863 34555666644
No 249
>4bby_A Alkyldihydroxyacetonephosphate synthase, peroxiso; transferase, plasmalogen, flavin, peroxisome; HET: FAD; 1.90A {Cavia porcellus} PDB: 4bc9_A* 4bca_A* 4bc7_A*
Probab=47.84 E-value=13 Score=33.71 Aligned_cols=54 Identities=20% Similarity=0.309 Sum_probs=38.3
Q ss_pred CCCCCcHHHHHHHHc----cCCCeEEEEEeeCCCCCCcccEEEEEeecHHHHHHHHHHh
Q 028130 57 LSTRVTNADLEKFFG----GEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYL 111 (213)
Q Consensus 57 Lp~~~t~~~L~~~F~----~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~Ai~~l 111 (213)
++...+-.||..+|- .+|-|+.+.|...+. .....+++|.|.+.++|.+|+..+
T Consensus 351 ~~k~~aGyDL~~L~iGSEGTLGIITeatLrL~P~-P~~~~~~~~~f~d~~~a~~av~~i 408 (658)
T 4bby_A 351 GPRMSTGPDIHHFIMGSEGTLGVITEATIKIRPT-PEYQKYGSVAFPNFEQGVACLREI 408 (658)
T ss_dssp CSSCCSSSCTHHHHTTCTTSSCEEEEEEEECEEC-CSEEEEEEEEESSHHHHHHHHHHH
T ss_pred ccccCCCcCHHHHhccCCCcCcceeeeeeeeccC-CccccccccccCCchhhhhhHHHH
Confidence 444555557888774 478888887765442 234457899999999999988766
No 250
>1yjr_A Copper-transporting ATPase 1; metallochaperone, protein-protein interaction, copper(I), metal homeostasis, structural proteomics in europe, spine; NMR {Homo sapiens} PDB: 1yjt_A 1yju_A 1yjv_A
Probab=44.25 E-value=46 Score=19.40 Aligned_cols=56 Identities=14% Similarity=0.175 Sum_probs=40.0
Q ss_pred CeEEEeCCCCCCcHHHHHHHHccCCCeEEEEEeeCCCCCCcccEEEEEeec----HHHHHHHHHHh
Q 028130 50 NNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMET----VEGADRCIKYL 111 (213)
Q Consensus 50 ~~v~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~t~~~~g~afV~f~~----~~~a~~Ai~~l 111 (213)
.++.|.++.-..-...|+..+.+...|..+.+.... +.+.|.|.. .+....+|+.+
T Consensus 6 ~~~~v~gm~C~~c~~~i~~~l~~~~gv~~~~v~~~~------~~~~v~~~~~~~~~~~i~~~i~~~ 65 (75)
T 1yjr_A 6 LELVVRGMTCASCVHKIESSLTKHRGILYCSVALAT------NKAHIKYDPEIIGPRDIIHTIESL 65 (75)
T ss_dssp EEEEEETCCTTTHHHHHHHHHTTSTTEEEEEEETTT------TEEEEEECTTTTHHHHHHHHHHHH
T ss_pred EEEEECCcccHHHHHHHHHHHHcCCCEEEEEEEecC------CEEEEEECCCCCCHHHHHHHHHHc
Confidence 468889998877788899999998888887775542 478888864 23344555543
No 251
>2ew9_A Copper-transporting ATPase 2; copper trafficking, ferrodoxin-like fold, structural genomics, structural proteomics in europe, spine, hydrolase; NMR {Homo sapiens}
Probab=44.24 E-value=51 Score=22.55 Aligned_cols=56 Identities=14% Similarity=0.178 Sum_probs=39.5
Q ss_pred CeEEEeCCCCCCcHHHHHHHHccCCCeEEEEEeeCCCCCCcccEEEEEeec----HHHHHHHHHHh
Q 028130 50 NNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMET----VEGADRCIKYL 111 (213)
Q Consensus 50 ~~v~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~t~~~~g~afV~f~~----~~~a~~Ai~~l 111 (213)
.++.|.++.-..-...|+..+.+...|..+.+.... +.+.|+|.. .++..++|+.+
T Consensus 82 ~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~------~~~~v~~~~~~~~~~~i~~~i~~~ 141 (149)
T 2ew9_A 82 IELTITGMTCASCVHNIESKLTRTNGITYASVALAT------SKALVKFDPEIIGPRDIIKIIEEI 141 (149)
T ss_dssp EEEEEESCCSHHHHHHHHHHHHHSSSCCEEEEETTT------TEEEEECCTTTSCHHHHHHHHHHH
T ss_pred eEEEEEeccCHHHHHHHHHHHhcCCCeEEEEEEcCC------CEEEEEECCCCCCHHHHHHHHHhC
Confidence 467788888766677788888888777777765532 478888863 45566666654
No 252
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=44.22 E-value=45 Score=22.06 Aligned_cols=53 Identities=6% Similarity=0.080 Sum_probs=33.7
Q ss_pred EEEeCCCCCCcHHHHHHHHcc-CC----CeEEEEEeeCCCCCCcccEEEEEeecHHHHHHHHHHh
Q 028130 52 LYVTGLSTRVTNADLEKFFGG-EG----KVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYL 111 (213)
Q Consensus 52 v~V~nLp~~~t~~~L~~~F~~-~G----~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~Ai~~l 111 (213)
|.+--+|..++-++|.+.+.. |+ +...++++-+ .| -+|++.+.++.+.||..+
T Consensus 17 i~~~~v~~~i~~~~L~~kv~~~~~~~~~~~f~lky~DE--eG-----D~itisSd~EL~eAl~l~ 74 (89)
T 1vd2_A 17 IMITHFEPSISFEGLCNEVRDMCSFDNEQLFTMKWIDE--EG-----DPCTVSSQLELEEAFRLY 74 (89)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHTTCCSSCCEEEEECCS--SS-----CCEECCSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEEEECC--CC-----CcccccCHHHHHHHHHHH
Confidence 556667888998887655442 22 3233444322 23 468889999999999854
No 253
>2w7a_A LINE-1 ORF1P; RNA-binding protein; HET: MSE; 1.40A {Homo sapiens}
Probab=44.02 E-value=62 Score=21.88 Aligned_cols=32 Identities=25% Similarity=0.291 Sum_probs=21.3
Q ss_pred EEEEEeecHHH---HHHHHHHhCCceeCCeeeEEE
Q 028130 93 FAFVTMETVEG---ADRCIKYLNRSVLEGRLITVE 124 (213)
Q Consensus 93 ~afV~f~~~~~---a~~Ai~~l~g~~i~g~~i~V~ 124 (213)
..+|.|....+ ...|........+.|.+|.+.
T Consensus 64 hIIvK~~~~~~KErILkaar~k~~vtykg~pirls 98 (100)
T 2w7a_A 64 HIIVRFTKVEMKEKMLRAAREKGRVTLKGKPIRLT 98 (100)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHCCEEETTEEEEEE
T ss_pred eEEEEecccccHHHHHHHHHHhCceeeCCcceeec
Confidence 66777766554 444444455677899998875
No 254
>1fvq_A Copper-transporting ATPase; APO-CCC2A, hydrolase; NMR {Saccharomyces cerevisiae} SCOP: d.58.17.1 PDB: 1fvs_A 2ggp_B
Probab=43.11 E-value=47 Score=19.17 Aligned_cols=55 Identities=18% Similarity=0.213 Sum_probs=36.4
Q ss_pred eEEEeCCCCCCcHHHHHHHHccCCCeEEEEEeeCCCCCCcccEEEEEee---cHHHHHHHHHHh
Q 028130 51 NLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTME---TVEGADRCIKYL 111 (213)
Q Consensus 51 ~v~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~t~~~~g~afV~f~---~~~~a~~Ai~~l 111 (213)
++.|.++....-...|+..+.+...|..+.+.... +.+.|+|. +.+....+|+.+
T Consensus 5 ~~~v~gm~C~~c~~~i~~~l~~~~gv~~~~v~~~~------~~~~v~~~~~~~~~~i~~~i~~~ 62 (72)
T 1fvq_A 5 ILAVHGMTCSACTNTINTQLRALKGVTKCDISLVT------NECQVTYDNEVTADSIKEIIEDC 62 (72)
T ss_dssp EEEECSCCSHHHHHHHHHHHHTSSSEEEECCBTTT------TEEEEEECTTSCHHHHHHHHHHH
T ss_pred EEEECCeecHHHHHHHHHHHhcCCCeEEEEEEecC------CEEEEEECCCCCHHHHHHHHHHC
Confidence 56777877665667788888888777776654432 47788886 234455566544
No 255
>1xn9_A 30S ribosomal protein S24E; beta+alpha, GFT structural genomics, protein structure initiative, PSI, NESG, MAR11; NMR {Methanosarcina mazei} SCOP: d.12.1.3
Probab=42.66 E-value=56 Score=22.14 Aligned_cols=48 Identities=15% Similarity=0.214 Sum_probs=27.3
Q ss_pred CCCcHHHHHHHHcc-CC---CeEEE-EEeeCCCCCCcccEEEEEeecHHHHHHH
Q 028130 59 TRVTNADLEKFFGG-EG---KVTEC-HLVTDPRTRESCGFAFVTMETVEGADRC 107 (213)
Q Consensus 59 ~~~t~~~L~~~F~~-~G---~i~~~-~i~~~~~t~~~~g~afV~f~~~~~a~~A 107 (213)
.+++..+|++.+.+ |+ .+..| .|......+++.|||.| |.+.+.|++.
T Consensus 28 ~tpsk~eirekLAk~~~~~~~~Vvv~~~~t~fG~gkstG~a~I-Yds~e~akk~ 80 (101)
T 1xn9_A 28 STPSRNDVRNKLAAMLNAPLELLVIQRIKTEYGMQESKGYAKL-YEDADRMKQV 80 (101)
T ss_dssp SCCCHHHHHHHHHHHTTCCTTTEEEEEEEECSSSSEEEEEEEE-CSCHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHhh
Confidence 45677777766654 43 23333 45555555667777755 5555555544
No 256
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}
Probab=42.31 E-value=10 Score=30.55 Aligned_cols=34 Identities=12% Similarity=0.096 Sum_probs=26.1
Q ss_pred CeEEEeCCCCCCcHHHHHHHHccCCCeEEEEEee
Q 028130 50 NNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVT 83 (213)
Q Consensus 50 ~~v~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~ 83 (213)
..+.|+|||+.++...|..++.....+..+.++.
T Consensus 115 ~~~vv~NlPY~iss~il~~ll~~~~~~~~~~~m~ 148 (279)
T 3uzu_A 115 SLRIIGNLPYNISSPLLFHLMSFAPVVIDQHFML 148 (279)
T ss_dssp CEEEEEECCHHHHHHHHHHHGGGGGGEEEEEEEE
T ss_pred ceEEEEccCccccHHHHHHHHhccCCccEEEEEe
Confidence 4678999999999999999998655555554443
No 257
>3u5c_Y RP50, 40S ribosomal protein S24-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_U* 3j16_D 3u5g_Y
Probab=42.08 E-value=71 Score=22.86 Aligned_cols=47 Identities=19% Similarity=0.262 Sum_probs=28.2
Q ss_pred CCCcHHHHHHHHcc-CCC---eEE-EEEeeCCCCCCcccEEEEEeecHHHHHH
Q 028130 59 TRVTNADLEKFFGG-EGK---VTE-CHLVTDPRTRESCGFAFVTMETVEGADR 106 (213)
Q Consensus 59 ~~~t~~~L~~~F~~-~G~---i~~-~~i~~~~~t~~~~g~afV~f~~~~~a~~ 106 (213)
.+++..+|++.+.+ |+. ++. ..|......++..|||.| |++.+.|..
T Consensus 33 aTpsr~eIrekLAk~y~~~~d~VvV~g~rT~fG~gkstGfa~I-Yds~d~akk 84 (135)
T 3u5c_Y 33 ANVSKDELREKLAEVYKAEKDAVSVFGFRTQFGGGKSVGFGLV-YNSVAEAKK 84 (135)
T ss_dssp CCCCHHHHHHHHHTTTTSCGGGEEEEEEEECTTSSEEEEEEEE-ESSHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEeccCCceEEEEEEE-eCCHHHHHh
Confidence 35778888887765 552 222 344455555667777765 566666554
No 258
>1mwy_A ZNTA; open-faced beta-sandwich fold, beta-alpha-beta-BETA-alpha- beta, hydrolase; NMR {Escherichia coli} SCOP: d.58.17.1 PDB: 1mwz_A
Probab=42.05 E-value=51 Score=19.31 Aligned_cols=55 Identities=9% Similarity=0.120 Sum_probs=39.3
Q ss_pred eEEEeCCCCCCcHHHHHHHHccCCCeEEEEEeeCCCCCCcccEEEEEeec--HHHHHHHHHHh
Q 028130 51 NLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMET--VEGADRCIKYL 111 (213)
Q Consensus 51 ~v~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~t~~~~g~afV~f~~--~~~a~~Ai~~l 111 (213)
++.|.++.-..-...|+..+.+...|..+.+.... +.+.|.|.. .+....+|..+
T Consensus 6 ~~~v~gm~C~~C~~~ie~~l~~~~gV~~~~v~~~~------~~~~v~~~~~~~~~i~~~i~~~ 62 (73)
T 1mwy_A 6 SWKVSGMDCAACARKVENAVRQLAGVNQVQVLFAT------EKLVVDADNDIRAQVESALQKA 62 (73)
T ss_dssp EEEEESCCSTTHHHHHHHHHHTSSSEEEEEEETTT------TEEEEEESSCCHHHHHHHHHHH
T ss_pred EEEECCcCCHHHHHHHHHHHhcCCCeeEEEEEecC------CEEEEEECCCCHHHHHHHHHHc
Confidence 57888988777778899999998888887776543 477888875 33445555544
No 259
>3ced_A Methionine import ATP-binding protein METN 2; ABC transporter, NIL domain, structur genomics, PSI-2, protein structure initiative; 2.15A {Staphylococcus aureus subsp} SCOP: d.58.18.13
Probab=41.50 E-value=40 Score=22.42 Aligned_cols=63 Identities=8% Similarity=-0.026 Sum_probs=36.5
Q ss_pred eEEEeCCCCCCcHHHHHHHHccCCCeEEEEE-eeCCCCCCcccEEEEEee--cHHHHHHHHHHhCC
Q 028130 51 NLYVTGLSTRVTNADLEKFFGGEGKVTECHL-VTDPRTRESCGFAFVTME--TVEGADRCIKYLNR 113 (213)
Q Consensus 51 ~v~V~nLp~~~t~~~L~~~F~~~G~i~~~~i-~~~~~t~~~~g~afV~f~--~~~~a~~Ai~~l~g 113 (213)
.|.|.-....+.+..|-++..+||--.+|.. ..+.-.+...|.-+|++. +.+++++|+..|..
T Consensus 22 lvrL~f~g~~~~~PvIs~l~~~~~v~vnIL~g~I~~i~~~~~G~L~v~l~G~~~~~~~~ai~~L~~ 87 (98)
T 3ced_A 22 IVRLVFAGSTTTEPIVSSLSTAYDIKINILEANIKNTKNGTVGFLVLHIPYISSVDFGKFEKELIE 87 (98)
T ss_dssp EEEEEEEEESCHHHHHHHHHHHHTCCCEEEEEEEEEETTEEEEEEEEEESCCCHHHHHHHHHHHHH
T ss_pred EEEEEECCCccCchHHHHHHHHHCCcEEEEEEEeEEeCCEeEEEEEEEEeCCCHHHHHHHHHHHHH
Confidence 4444333345566667777777774333221 112224456688888887 36677888887743
No 260
>1ywx_A 30S ribosomal protein S24E; GFT MRR16, nesgc, structural genomics, PSI, protein structure initiative; NMR {Methanococcus maripaludis} SCOP: d.12.1.3
Probab=41.05 E-value=57 Score=22.14 Aligned_cols=47 Identities=13% Similarity=0.004 Sum_probs=27.6
Q ss_pred CCCcHHHHHHHHcc-CC---CeEE-EEEeeCCCCCCcccEEEEEeecHHHHHH
Q 028130 59 TRVTNADLEKFFGG-EG---KVTE-CHLVTDPRTRESCGFAFVTMETVEGADR 106 (213)
Q Consensus 59 ~~~t~~~L~~~F~~-~G---~i~~-~~i~~~~~t~~~~g~afV~f~~~~~a~~ 106 (213)
.+++..+|++.+.+ |+ .+.. ..|......+++.|||.| |.+.+.|++
T Consensus 28 ~tpsk~eirekLAk~~~~~~d~Vvv~~~~T~fG~gkstG~a~I-Yds~e~akk 79 (102)
T 1ywx_A 28 ATPSIKDVKMKLVAVLNANKQVLVVDTLDQIFGKLEAEGYAKI-YNDEKAMAT 79 (102)
T ss_dssp CCCCHHHHHHHHHHHHTSCSTTEEEEEEEECSSSSEEEEEEEE-CSCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEccEecCCCceEEEEEEE-ECCHHHHHh
Confidence 45667777766654 33 2333 345555556677777765 666666654
No 261
>2jrh_A Mitogen-activated protein kinase kinase kinase 3; kinase signaling domain, transferase; NMR {Homo sapiens} PDB: 2pph_A
Probab=40.87 E-value=41 Score=22.32 Aligned_cols=64 Identities=17% Similarity=0.222 Sum_probs=42.8
Q ss_pred CCCCCCcHHHHHHHH-ccCCCeEEEEEeeCCCCCCcccEEEEEeecHHHHHHHHHHhCCceeCCeeeEEEeccc
Q 028130 56 GLSTRVTNADLEKFF-GGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGRLITVEKAKR 128 (213)
Q Consensus 56 nLp~~~t~~~L~~~F-~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~a~~ 128 (213)
-++.-+.-++|+... ..||.-.++.++.+ -..|-..+.++..+||+.|+-.. .-+.|+|-+...
T Consensus 19 ~f~RPvkf~dl~qkv~~afGq~ldl~y~nn--------EL~iPL~~Q~DLDkAvelLDrs~-~mkSLRIlL~~~ 83 (94)
T 2jrh_A 19 AFSRPVKYEDVEHKVTTVFGQPLDLHYMNN--------ELSILLKNQDDLDKAIDILDRSS-SMKSLRILLLSQ 83 (94)
T ss_dssp EECSSCCHHHHHHHHHHHHCSSEEEEEECS--------SCEEECCSHHHHHHHHHHHHHST-TTTEEEEEEEEC
T ss_pred ecCCCccHHHHHHHHHHHhCCeeeeEEecc--------eeEEeccCHHHHHHHHHHhccCc-cccceEEEEEcC
Confidence 356667777776554 46898888877643 36788899999999999775432 333445544433
No 262
>2v94_A RPS24, 30S ribosomal protein S24E; ribonucleoprotein; 1.90A {Pyrococcus abyssi} SCOP: d.12.1.3
Probab=39.56 E-value=63 Score=22.13 Aligned_cols=47 Identities=11% Similarity=-0.046 Sum_probs=26.8
Q ss_pred CCCcHHHHHHHHcc-CC---CeEEE-EEeeCCCCCCcccEEEEEeecHHHHHH
Q 028130 59 TRVTNADLEKFFGG-EG---KVTEC-HLVTDPRTRESCGFAFVTMETVEGADR 106 (213)
Q Consensus 59 ~~~t~~~L~~~F~~-~G---~i~~~-~i~~~~~t~~~~g~afV~f~~~~~a~~ 106 (213)
.+++..+|++.+.+ |+ .+..| .|......+++.|||.| |++.+.|.+
T Consensus 37 ~tpsk~eirekLA~~~~~~~d~Vvv~~~~T~fG~gkstG~a~I-Yds~e~akk 88 (107)
T 2v94_A 37 PTPSRKDVKGKLVAMLDLNPETTVIQYIRSYFGSYKSKGYAKY-YYDKDRMLY 88 (107)
T ss_dssp CCCCHHHHHHHHHHHHTCCGGGEEEEEEECCTTCSEEEEEEEE-ESSHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHh
Confidence 35667777766554 33 23333 44444455667777765 666666654
No 263
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=39.40 E-value=19 Score=28.91 Aligned_cols=33 Identities=12% Similarity=0.296 Sum_probs=25.3
Q ss_pred CCeEEEeCCCCCCcHHHHHHHHccCCCeEEEEEe
Q 028130 49 GNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLV 82 (213)
Q Consensus 49 ~~~v~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~ 82 (213)
...+.|+|||..++...|..++.. ..+..+.++
T Consensus 110 ~~~~iv~NlPy~iss~il~~ll~~-~~~~~~~lm 142 (271)
T 3fut_A 110 QGSLLVANLPYHIATPLVTRLLKT-GRFARLVFL 142 (271)
T ss_dssp TTEEEEEEECSSCCHHHHHHHHHH-CCEEEEEEE
T ss_pred CccEEEecCcccccHHHHHHHhcC-CCCCEEEEE
Confidence 356889999999999999999877 555444433
No 264
>1x60_A Sporulation-specific N-acetylmuramoyl-L-alanine amidase; CWLC, CWLCR, peptidoglycan, cell WALL lytic amidase, tandem repeats, hydrolase; NMR {Bacillus subtilis}
Probab=38.44 E-value=30 Score=21.63 Aligned_cols=66 Identities=6% Similarity=0.019 Sum_probs=41.5
Q ss_pred CCCCCeEEEeCCCCCCcHHHHHHHHccCCCeEEEEEeeCCCCCCcccEEEEEeecHHHHHHHHHHhCCcee
Q 028130 46 ANPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVL 116 (213)
Q Consensus 46 ~~~~~~v~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i 116 (213)
......|.|+-+......+.|...+...|.-..| ... +..--.-+--|.+.++|+.++..|...-+
T Consensus 6 ~~~~~~vQvGaf~~~~~A~~~~~~L~~~g~~~~i--~~~---~~~yRV~vGpf~~~~~A~~~~~~L~~~g~ 71 (79)
T 1x60_A 6 SSGLYKVQIGAFKVKANADSLASNAEAKGFDSIV--LLK---DGLYKVQIGAFSSKDNADTLAARAKNAGF 71 (79)
T ss_dssp CCCEEEEEEEEESCHHHHHHHHHHHHHHTCCEEE--EEE---TTEEEEEEEEESSHHHHHHHHHHHHHHTS
T ss_pred CCCCEEEEEEEcCCHHHHHHHHHHHHhCCCCeEE--ecC---CcEEEEEECCcCCHHHHHHHHHHHHHcCC
Confidence 3456788888888777777777777665643333 211 11112334468899999999988865434
No 265
>2c60_A Human mitogen-activated protein kinase kinase kinase 3 isoform 2; MAP3K3, MAP/ERK kinase kinase 3, MAPKKK3, MEKK3, serine threonine phosphorylation; HET: MSE; 1.25A {Homo sapiens} SCOP: d.15.2.2 PDB: 2o2v_B
Probab=38.09 E-value=39 Score=23.04 Aligned_cols=51 Identities=22% Similarity=0.294 Sum_probs=37.3
Q ss_pred CCCCCCcHHHHHHHH-ccCCCeEEEEEeeCCCCCCcccEEEEEeecHHHHHHHHHHhCCc
Q 028130 56 GLSTRVTNADLEKFF-GGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRS 114 (213)
Q Consensus 56 nLp~~~t~~~L~~~F-~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~ 114 (213)
-++.-+.-++|+... ..||...++.++.+ --.|-..+.++..+||+.|+-.
T Consensus 46 qf~RPvkf~dl~qkv~~afGq~ldl~y~nn--------EL~IPL~~Q~DLDkAvelLDrs 97 (111)
T 2c60_A 46 AFSRPVKYEDVEHKVTTVFGQPLDLHYMNN--------ELSILLKNQDDLDKAIDILDRS 97 (111)
T ss_dssp EECSSCCHHHHHHHHHHHHSSCCEEEEECS--------SCEEECCSHHHHHHHHHHHHHC
T ss_pred ecCCCccHHHHHHHHHHHhCCeeeeEEecc--------eEEEecccHHHHHHHHHHhccC
Confidence 356667777776554 45888888877643 3578888999999999977543
No 266
>1opz_A Potential copper-transporting ATPase; mutation, folding, abbab fold, hydrolase; NMR {Bacillus subtilis} SCOP: d.58.17.1 PDB: 1oq3_A 1oq6_A
Probab=37.85 E-value=60 Score=18.83 Aligned_cols=56 Identities=18% Similarity=0.162 Sum_probs=39.2
Q ss_pred CeEEEeCCCCCCcHHHHHHHHccCCCeEEEEEeeCCCCCCcccEEEEEeec----HHHHHHHHHHh
Q 028130 50 NNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMET----VEGADRCIKYL 111 (213)
Q Consensus 50 ~~v~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~t~~~~g~afV~f~~----~~~a~~Ai~~l 111 (213)
.++.|.++.-..-...|+..+...-.|..+.+.... +.+.|.|.. .+....+|..+
T Consensus 8 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~------~~~~v~~~~~~~~~~~i~~~i~~~ 67 (76)
T 1opz_A 8 IAMQVSGMTCAACAARIEKGLKRMPGVTDANVNLAT------ETVNVIYDPAETGTAAIQEKIEKL 67 (76)
T ss_dssp EEEEEESCCSTTHHHHHHHHHHTSTTEEEEEEEGGG------TEEEEEECTTTCCHHHHHHHHHHH
T ss_pred EEEEECCcccHHHHHHHHHHHhcCCCeEEEEEEecC------CEEEEEECCCCCCHHHHHHHHHHC
Confidence 468888998777778899999988778777765432 477888853 34455556543
No 267
>2qif_A Copper chaperone COPZ; tetranuclear Cu(I) cluster; 1.50A {Bacillus subtilis} SCOP: d.58.17.1 PDB: 3i9z_A 1k0v_A 1p8g_A
Probab=37.70 E-value=54 Score=18.33 Aligned_cols=54 Identities=22% Similarity=0.281 Sum_probs=36.4
Q ss_pred eEEEeCCCCCCcHHHHHHHHccCCCeEEEEEeeCCCCCCcccEEEEEeec----HHHHHHHHHH
Q 028130 51 NLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMET----VEGADRCIKY 110 (213)
Q Consensus 51 ~v~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~t~~~~g~afV~f~~----~~~a~~Ai~~ 110 (213)
++.|.++.-..-...|+..+...-.|..+.+.... +.+.|+|.. .+....+|..
T Consensus 5 ~~~v~gm~C~~c~~~i~~~l~~~~gv~~~~v~~~~------~~~~v~~~~~~~~~~~i~~~i~~ 62 (69)
T 2qif_A 5 TLQVEGMSCQHCVKAVETSVGELDGVSAVHVNLEA------GKVDVSFDADKVSVKDIADAIED 62 (69)
T ss_dssp EEEEECCCSHHHHHHHHHHHHTSTTEEEEEEETTT------TEEEEEECTTTCCHHHHHHHHHH
T ss_pred EEEECCcccHHHHHHHHHHHhcCCCeeEEEEEecC------CEEEEEECCCCCCHHHHHHHHHH
Confidence 57788887665566788888888778777765432 477888863 3444555554
No 268
>2crl_A Copper chaperone for superoxide dismutase; SOD1, familial ALS, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=37.34 E-value=68 Score=20.80 Aligned_cols=53 Identities=9% Similarity=0.152 Sum_probs=35.3
Q ss_pred eEEEeCCCCCCcHHHHHHHHccCCCeEEEEEeeCCCCCCcccEEEEEee-cHHHHHHHHHH
Q 028130 51 NLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTME-TVEGADRCIKY 110 (213)
Q Consensus 51 ~v~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~t~~~~g~afV~f~-~~~~a~~Ai~~ 110 (213)
+|.|. +.-..-...|+..|.+...|..+.+.... +.+.|+|. +.++..++|+.
T Consensus 22 ~l~V~-m~C~~C~~~Ie~aL~~l~GV~~v~vdl~~------~~~~V~~~~~~~~i~~~i~~ 75 (98)
T 2crl_A 22 EFAVQ-MTCQSCVDAVRKSLQGVAGVQDVEVHLED------QMVLVHTTLPSQEVQALLEG 75 (98)
T ss_dssp EEEEC-CCSHHHHHHHHHTTTTCTTCCEEEEETTT------TEEEEEESSCHHHHHHHHHT
T ss_pred EEEEe-eECHHHHHHHHHHHHcCCCceEEEEECCC------CEEEEEEeCCHHHHHHHHHH
Confidence 46666 65555567789999998888888776543 46777774 34555566553
No 269
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=36.77 E-value=6.1 Score=28.87 Aligned_cols=28 Identities=29% Similarity=0.530 Sum_probs=15.9
Q ss_pred HHHHHHHccCCCeEEEEEeeCCCCCCcccEEEEEee
Q 028130 64 ADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTME 99 (213)
Q Consensus 64 ~~L~~~F~~~G~i~~~~i~~~~~t~~~~g~afV~f~ 99 (213)
+||.++|...|.|+-+.. .+||+||+..
T Consensus 2 ~~~~~l~~~~G~Vkwfn~--------~kGfGFI~~~ 29 (148)
T 3ts2_A 2 ADEPQLLHGAGICKWFNV--------RMGFGFLSMT 29 (148)
T ss_dssp ----CCEEEEEEEEEEET--------TTTEEEEEEE
T ss_pred CcccccccceeEEEEEEC--------CCCeeEEeeC
Confidence 456667777776654432 2389999976
No 270
>2xzm_P RPS24E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_P
Probab=35.57 E-value=76 Score=23.10 Aligned_cols=47 Identities=13% Similarity=0.093 Sum_probs=26.5
Q ss_pred CCCcHHHHHHHHcc-CCC---eEEE-EEeeCCCCCCcccEEEEEeecHHHHHH
Q 028130 59 TRVTNADLEKFFGG-EGK---VTEC-HLVTDPRTRESCGFAFVTMETVEGADR 106 (213)
Q Consensus 59 ~~~t~~~L~~~F~~-~G~---i~~~-~i~~~~~t~~~~g~afV~f~~~~~a~~ 106 (213)
.+++..+|++.+.+ |+. ++.| .|......+++.|||.| |++.+.|..
T Consensus 31 aTpSk~eIrekLAkmy~~~~d~VvV~g~rT~fGggkStGfa~I-YDs~e~aKk 82 (149)
T 2xzm_P 31 PTASKEKIREELAKQLKVDARNVVVYGFSTQYGGGKSTGFALV-YDNQQYLLK 82 (149)
T ss_dssp CSCCHHHHHHHHHHHHTCCGGGEEEEEECCCSSSSEEEEEEEE-ESCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-eCCHHHHHh
Confidence 45677788776665 432 2223 34444445666677765 566665554
No 271
>3lo3_A Uncharacterized conserved protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.38A {Colwellia psychrerythraea} SCOP: d.58.4.0
Probab=34.97 E-value=59 Score=21.37 Aligned_cols=19 Identities=11% Similarity=0.020 Sum_probs=15.9
Q ss_pred ccEEEEEeecHHHHHHHHH
Q 028130 91 CGFAFVTMETVEGADRCIK 109 (213)
Q Consensus 91 ~g~afV~f~~~~~a~~Ai~ 109 (213)
....+|+|.+.+.|++++.
T Consensus 53 ~~~viieFps~~aa~a~y~ 71 (94)
T 3lo3_A 53 KAQVILEFPSREDAYNWYH 71 (94)
T ss_dssp SEEEEEEESSHHHHHHHHH
T ss_pred CeEEEEECCCHHHHHHHHC
Confidence 3578999999999998864
No 272
>3tbg_A Cytochrome P450 2D6; monooxygenase, thioridazine, oxidoreductase; HET: RTZ HEM; 2.10A {Homo sapiens} PDB: 3qm4_A* 2f9q_A*
Probab=34.14 E-value=29 Score=29.07 Aligned_cols=48 Identities=13% Similarity=0.071 Sum_probs=32.4
Q ss_pred EEeCCCC---CCcHHHHHHHHccCCCeEEEEEeeCCCCCCcccEEEEEeecHHHHHHHHH
Q 028130 53 YVTGLST---RVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIK 109 (213)
Q Consensus 53 ~V~nLp~---~~t~~~L~~~F~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~Ai~ 109 (213)
+||||.. .-....+.++..+||+|..+.+. +.-+|...+.+.+++++.
T Consensus 20 ~iGn~~~~~~~~~~~~~~~~~~kYG~i~~~~~g---------~~~~vvv~~p~~i~~vl~ 70 (479)
T 3tbg_A 20 GLGNLLHVDFQNTPYCFDQLRRRFGDVFSLQLA---------WTPVVVLNGLAAVREALV 70 (479)
T ss_dssp TTBTGGGCCTTSHHHHHHHHHHHHCSEEEEEET---------TEEEEEEEHHHHHHHHHT
T ss_pred cccchHhhcCCCHHHHHHHHHHHhCCEEEEEEC---------CeeEEEECCHHHHHHHHH
Confidence 5777653 23345677888899999877763 234566678888877764
No 273
>2kyz_A Heavy metal binding protein; structural genomics, PSI-biology, protein structure initiative, joint for structural genomics, JCSG; NMR {Thermotoga maritima}
Probab=34.08 E-value=31 Score=20.08 Aligned_cols=52 Identities=15% Similarity=0.197 Sum_probs=32.6
Q ss_pred eEEEeCCCCCCcHHHHHHHHccCCCeEEEEEeeCCCCCCcccEEEEEeecHHHHHHHHH
Q 028130 51 NLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIK 109 (213)
Q Consensus 51 ~v~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~Ai~ 109 (213)
++.|.|+.-..-...++..+.+. .|..+.+.... +.+.|+|...+....+|+
T Consensus 4 ~~~v~gm~C~~C~~~i~~~l~~~-gv~~~~v~~~~------~~~~v~~~~~~~i~~~i~ 55 (67)
T 2kyz_A 4 VLYVPDISCNHCKMRISKALEEL-GVKNYEVSVEE------KKVVVETENLDSVLKKLE 55 (67)
T ss_dssp EEECGGGGSHHHHHHHHHHHHHH-TCSEEEEETTT------TEEEEECSCHHHHHHHHH
T ss_pred EEEECCcCcHHHHHHHHHHHHHc-CCeEEEEECCC------CEEEEEECCHHHHHHHHH
Confidence 45666666555556688888877 77777665432 477888875433444544
No 274
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=33.22 E-value=9 Score=27.05 Aligned_cols=28 Identities=7% Similarity=-0.016 Sum_probs=0.0
Q ss_pred cEEEEEeecHHHHHHHHHHhCCceeCCe
Q 028130 92 GFAFVTMETVEGADRCIKYLNRSVLEGR 119 (213)
Q Consensus 92 g~afV~f~~~~~a~~Ai~~l~g~~i~g~ 119 (213)
-++|++|++...+..|+..|+|....|.
T Consensus 5 ~~~~~~~~~~~~~~~a~~~~~g~~~~g~ 32 (135)
T 2lea_A 5 HHHHHHSSGLVPRGSHMASMTGGQQMGR 32 (135)
T ss_dssp ----------------------------
T ss_pred ccccccccCCCchhhhhhhccCCCCCCC
Confidence 3788888999999999998988765543
No 275
>3e6i_A CYPIIE1, P450-J, cytochrome P450 2E1; CYP2E1, monooxygenase, acetaminophen, oxidoreductase, heme, endoplasmic reticulum, iron, membrane; HET: HEM; 2.20A {Homo sapiens} PDB: 3e4e_A* 3gph_A* 3koh_A* 3lc4_A* 3t3z_A*
Probab=32.81 E-value=42 Score=28.07 Aligned_cols=50 Identities=10% Similarity=0.007 Sum_probs=35.8
Q ss_pred eEEEeCCCCC---CcHHHHHHHHccCCCeEEEEEeeCCCCCCcccEEEEEeecHHHHHHHHH
Q 028130 51 NLYVTGLSTR---VTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIK 109 (213)
Q Consensus 51 ~v~V~nLp~~---~t~~~L~~~F~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~Ai~ 109 (213)
.-+|||+..- -....+.++..+||.|..+.+. +.-+|.+.+.+.++.++.
T Consensus 18 ~PliG~~~~~~~~~~~~~~~~~~~~yG~v~~~~~g---------~~~~vvv~~~~~v~~il~ 70 (476)
T 3e6i_A 18 LPIIGNLFQLELKNIPKSFTRLAQRFGPVFTLYVG---------SQRMVVMHGYKAVKEALL 70 (476)
T ss_dssp BTTTBTGGGCCTTCHHHHHHHHHHHHCSEEEEEET---------TEEEEEECSHHHHHHHHH
T ss_pred cccccChhhhccccHhHHHHHHHHHhCCEEEEEEC---------CccEEEECCHHHHHHHHh
Confidence 3456777532 2345678888999999777653 356788889999988886
No 276
>1wvf_A 4-cresol dehydrogenase [hydroxylating] flavoprote subunit; flavoprotein, electron-transfer, FAD, oxidoreductase; HET: FAD; 1.30A {Pseudomonas putida} SCOP: d.58.32.1 d.145.1.1 PDB: 1wve_A* 1dii_A* 1diq_A*
Probab=32.74 E-value=39 Score=29.61 Aligned_cols=44 Identities=16% Similarity=0.114 Sum_probs=28.9
Q ss_pred HHHHHH--ccCCCeEEEEEeeCCCCCCcccEEEEEeecHHHHHHHHH
Q 028130 65 DLEKFF--GGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIK 109 (213)
Q Consensus 65 ~L~~~F--~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~Ai~ 109 (213)
+|..+| ..+|-|+.+.+...+. ......+++.|.+.++|.+|+.
T Consensus 217 ~l~~l~~g~~lGiVt~~~l~l~p~-p~~~~~~~~~f~~~~~~~~~~~ 262 (520)
T 1wvf_A 217 TLDGMFTQANYGICTKMGFWLMPK-PPVFKPFEVIFEDEADIVEIVD 262 (520)
T ss_dssp CCHHHHTTSSSCEEEEEEEECEEC-CSEEEEEEEEECCGGGHHHHHH
T ss_pred chhhhccCCceEEEEEEEEEEEec-CCeEEEEEEEeCCHHHHHHHHH
Confidence 355666 3589898888766542 2233467889998888766443
No 277
>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A
Probab=32.73 E-value=38 Score=26.61 Aligned_cols=30 Identities=7% Similarity=0.073 Sum_probs=22.5
Q ss_pred CeEEEeCCCCCCcHHHHHHHHccCCCeEEE
Q 028130 50 NNLYVTGLSTRVTNADLEKFFGGEGKVTEC 79 (213)
Q Consensus 50 ~~v~V~nLp~~~t~~~L~~~F~~~G~i~~~ 79 (213)
..+.|+|||+.++...|..++.....+..+
T Consensus 91 ~~~vvsNlPY~i~~~il~~ll~~~~~~~~~ 120 (252)
T 1qyr_A 91 PLRVFGNLPYNISTPLMFHLFSYTDAIADM 120 (252)
T ss_dssp CEEEEEECCTTTHHHHHHHHHTTGGGEEEE
T ss_pred ceEEEECCCCCccHHHHHHHHhcCCCcceE
Confidence 368899999999999888888754334333
No 278
>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0
Probab=32.68 E-value=13 Score=29.53 Aligned_cols=33 Identities=15% Similarity=0.162 Sum_probs=25.3
Q ss_pred eEEEeCCCCCCcHHHHHHHHccCCCeEEEEEee
Q 028130 51 NLYVTGLSTRVTNADLEKFFGGEGKVTECHLVT 83 (213)
Q Consensus 51 ~v~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~ 83 (213)
...|+|||+.++...|..++.....+..+.++.
T Consensus 98 ~~vv~NlPY~is~~il~~ll~~~~~~~~~~lm~ 130 (255)
T 3tqs_A 98 LRVVGNLPYNISTPLLFHLFSQIHCIEDMHFML 130 (255)
T ss_dssp EEEEEECCHHHHHHHHHHHHHTGGGEEEEEEEE
T ss_pred eEEEecCCcccCHHHHHHHHhCCCChheEEEEE
Confidence 458999999999999999998766665554443
No 279
>4hhu_A OR280; engineered protein, PSI-biology, structural genomi unknown function; HET: AE4 PG4; 2.00A {Synthetic construct}
Probab=32.41 E-value=1.2e+02 Score=21.17 Aligned_cols=70 Identities=13% Similarity=0.275 Sum_probs=40.0
Q ss_pred eEEEeCCCCCCcHHHHH---HHHccCCCeEEEEEeeCCCCCCcccEEEEEee--cHHHHHHHHHHh-------CCc---e
Q 028130 51 NLYVTGLSTRVTNADLE---KFFGGEGKVTECHLVTDPRTRESCGFAFVTME--TVEGADRCIKYL-------NRS---V 115 (213)
Q Consensus 51 ~v~V~nLp~~~t~~~L~---~~F~~~G~i~~~~i~~~~~t~~~~g~afV~f~--~~~~a~~Ai~~l-------~g~---~ 115 (213)
.|.|.++|..+..+-.+ .+-..|.--....|+-. ..|..-|.|. +.+..++|++.| -|+ .
T Consensus 44 ~i~itgvpeqvrkelakeaerl~~efni~v~y~imgs-----gsgvm~i~f~gddlea~ekalkemirqarkfagtvtyt 118 (170)
T 4hhu_A 44 VIVITGVPEQVRKELAKEAERLKAEFNINVQYQIMGS-----GSGVMVIVFEGDDLEALEKALKEMIRQARKFAGTVTYT 118 (170)
T ss_dssp EEEEESCCHHHHHHHHHHHHHHHHHHTCEEEEEEECT-----TCCEEEEEEECSCHHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred EEEEeCCcHHHHHHHHHHHHHHHHhcceEEEEEEEeC-----CceEEEEEEecCcHHHHHHHHHHHHHHHHhhcceEEEE
Confidence 46778999876644222 22233443334444432 2267778885 678888888655 343 3
Q ss_pred eCCeeeEEEe
Q 028130 116 LEGRLITVEK 125 (213)
Q Consensus 116 i~g~~i~V~~ 125 (213)
+.|..|.|.+
T Consensus 119 l~gn~l~i~i 128 (170)
T 4hhu_A 119 LSGNRLVIVI 128 (170)
T ss_dssp ECSSEEEEEE
T ss_pred EeCCEEEEEE
Confidence 6677666544
No 280
>2rop_A Copper-transporting ATPase 2; wilson protein, mobility, protein-protein interaction, alternative splicing, ATP-binding, copper transport cytoplasm; NMR {Homo sapiens}
Probab=32.27 E-value=1.5e+02 Score=21.72 Aligned_cols=56 Identities=14% Similarity=0.150 Sum_probs=41.5
Q ss_pred CeEEEeCCCCCCcHHHHHHHHccCCCeEEEEEeeCCCCCCcccEEEEEeec----HHHHHHHHHHh
Q 028130 50 NNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMET----VEGADRCIKYL 111 (213)
Q Consensus 50 ~~v~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~t~~~~g~afV~f~~----~~~a~~Ai~~l 111 (213)
.+|.|.++.-..-...|+..+.+.-.|..+.+.... +.+.|+|.. .++...+|+.+
T Consensus 124 ~~l~v~Gm~C~~C~~~ie~~l~~~~GV~~~~v~~~~------~~~~v~~~~~~~~~~~i~~~i~~~ 183 (202)
T 2rop_A 124 TLIAIAGMTCASCVHSIEGMISQLEGVQQISVSLAE------GTATVLYNPAVISPEELRAAIEDM 183 (202)
T ss_dssp EEEEESCCCSTHHHHHHHHHGGGSSSEEEEEEETTT------TEEEEEECTTTCCHHHHHHHHHHH
T ss_pred EEEEECCccCHHHHHHHHHHHHcCCCeEEEEEEccC------CEEEEEECCCCCCHHHHHHHHHHc
Confidence 468888888777778899999998888888776543 478888863 45556666654
No 281
>2ldi_A Zinc-transporting ATPase; metal homeostasis, metallochaperones, hydrolase; NMR {Synechocystis SP}
Probab=32.06 E-value=71 Score=18.01 Aligned_cols=53 Identities=17% Similarity=0.186 Sum_probs=36.6
Q ss_pred eEEEeCCCCCCcHHHHHHHHccCCCeEEEEEeeCCCCCCcccEEEEEeec----HHHHHHHHH
Q 028130 51 NLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMET----VEGADRCIK 109 (213)
Q Consensus 51 ~v~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~t~~~~g~afV~f~~----~~~a~~Ai~ 109 (213)
++.|.++.-..-...|+..+...-.|..+.+.... +.+.|.|.. .+....+|+
T Consensus 6 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~------~~~~v~~~~~~~~~~~i~~~i~ 62 (71)
T 2ldi_A 6 QMQVGGMRCAACASSIERALERLKGVAEASVTVAT------GRLTVTYDPKQVSEITIQERIA 62 (71)
T ss_dssp EEEEETCTTSGGGHHHHTGGGGCSSEEEEEEETTT------TEEEEEECTTTCCTHHHHHHHH
T ss_pred EEEECCccCHHHHHHHHHHHhcCCCeeEEEEEecC------CEEEEEECCCCCCHHHHHHHHH
Confidence 57788888766677788888888778777765432 477888864 244455555
No 282
>1jww_A Potential copper-transporting ATPase; beta-alpha-beta-BETA-alpha-beta, hydrolase; NMR {Bacillus subtilis} SCOP: d.58.17.1 PDB: 2voy_A 1kqk_A
Probab=31.74 E-value=81 Score=18.56 Aligned_cols=55 Identities=13% Similarity=0.137 Sum_probs=35.6
Q ss_pred eEEEeCCCCCCcHHHHHHHHccCCCeEEEEEeeCCCCCCcccEEEEEeec----HHHHHHHHHHh
Q 028130 51 NLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMET----VEGADRCIKYL 111 (213)
Q Consensus 51 ~v~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~t~~~~g~afV~f~~----~~~a~~Ai~~l 111 (213)
++.|.++.-..-...|+..+.+.-.|..+.+.... +.+.|.|.. .+....+|..+
T Consensus 6 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~------~~~~v~~~~~~~~~~~i~~~i~~~ 64 (80)
T 1jww_A 6 EFDIEGMTCAACANRIEKRLNKIEGVANAPVNFAL------ETVTVEYNPKEASVSDLKEAVDKL 64 (80)
T ss_dssp EEEEESCCCHHHHHHHHHHHHTSTTEEECCCCSSS------SEEEEEECTTTCCHHHHHHHHHHH
T ss_pred EEEECCccCHHHHHHHHHHHhcCCCeEEEEEEecC------CEEEEEECCCCCCHHHHHHHHHHc
Confidence 57788887665567788888887777666544322 577888863 34455556543
No 283
>2rf4_B DNA-directed RNA polymerase I subunit RPA4; transferase DNA/RNA, DNA-binding, phosphorylation, POL I, POLI, rpoli, nuclear protein; 3.10A {Saccharomyces cerevisiae}
Probab=31.68 E-value=28 Score=22.88 Aligned_cols=33 Identities=15% Similarity=0.151 Sum_probs=25.7
Q ss_pred CCCCCCCCCeEEEeCCCCCCcHHHHHHHHccCC
Q 028130 42 SPDAANPGNNLYVTGLSTRVTNADLEKFFGGEG 74 (213)
Q Consensus 42 ~~~~~~~~~~v~V~nLp~~~t~~~L~~~F~~~G 74 (213)
-+...+....|.|.+.+..++.++.++++..|-
T Consensus 12 ~~s~lNtPvvi~v~~~~q~v~~~eae~~L~~FI 44 (87)
T 2rf4_B 12 TATTLNTPVVIHATQLPQHVSTDEVLQFLESFI 44 (87)
T ss_dssp ----CCCCCEEEESSCCEECCHHHHHHHHHHHH
T ss_pred CccccCCCeEEEeecCCccCCHHHHHHHHHHHH
Confidence 345677888999999999999999999988873
No 284
>3pm9_A Putative oxidoreductase; putative D-2-hydroxyglutarate dehydrogenase, putative D-LACT dehydrogenase; HET: FAD; 2.57A {Rhodopseudomonas palustris}
Probab=31.39 E-value=63 Score=28.02 Aligned_cols=52 Identities=23% Similarity=0.266 Sum_probs=33.8
Q ss_pred CCCcHHHHHHHHc----cCCCeEEEEEeeCCCCCCcccEEEEEeecHHHHHHHHHHh
Q 028130 59 TRVTNADLEKFFG----GEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYL 111 (213)
Q Consensus 59 ~~~t~~~L~~~F~----~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~Ai~~l 111 (213)
.+.+..+|..+|. .+|-|+.+.+...+. ......+++.|.+.++|.+|+..+
T Consensus 196 k~~~g~dl~~l~~Gs~GtlGIIt~~tl~l~p~-p~~~~~~~~~~~~~~~a~~~~~~~ 251 (476)
T 3pm9_A 196 KDNTGYDLRDLFIGAEGTLGIITAATLKLFPK-PRAVETAFVGLQSPDDALKLLGIA 251 (476)
T ss_dssp CCCSSCCCHHHHTTSTTSSCEEEEEEEECEEC-CSEEEEEEEEESCHHHHHHHHHHH
T ss_pred CCCCCcCHHHHhccCCCCcEEEEEEEEEEeec-CceeEEEEEEcCCHHHHHHHHHHH
Confidence 3333345555553 356788877765543 233457889999999998888766
No 285
>3fjv_A Uncharacterized novel protein; YP_111841.1, novel protein of unknown function; HET: MSE; 1.90A {Burkholderia pseudomallei K96243}
Probab=31.15 E-value=52 Score=25.09 Aligned_cols=55 Identities=5% Similarity=-0.005 Sum_probs=36.2
Q ss_pred cHHHHHHHHccCCCeEEEEEeeCCCCCCcccEEEEEeecHHHHHHHHHHhCCce------eCCe-eeEE
Q 028130 62 TNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSV------LEGR-LITV 123 (213)
Q Consensus 62 t~~~L~~~F~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~------i~g~-~i~V 123 (213)
.+++|++.+..|.++. +..+.-+..-||+|.+.++...+|..|.|.+ |+|. .|..
T Consensus 66 ~~~~I~~Ei~aYnpLi-------P~~~~l~ATl~IE~~d~~er~~~L~~L~Gie~~v~l~v~~~~~V~a 127 (194)
T 3fjv_A 66 DEDGIQAELDAYLPLV-------PDGSNLKATLQIEYENETQRRAALARLVGIEDRVFLRVDDEAPVYA 127 (194)
T ss_dssp SHHHHHHHHHHHGGGC-------CCSSEEEEEEEECCSSHHHHHHHHHHTTTGGGSEEEEETTSCCEEC
T ss_pred CHHHHHHHHHHhcccC-------CCCCcEEEEEEEEcCCHHHHHHHHHHhcCccceEEEEECCcceeee
Confidence 4455555555555442 2233344578999999999999999998863 5565 4543
No 286
>3bgu_A Ferredoxin-like protein of unknown function; ferredoxin-like fold, stress responsive A/B barrel domain, S genomics; 1.50A {Thermobifida fusca}
Probab=30.85 E-value=1.3e+02 Score=20.48 Aligned_cols=55 Identities=13% Similarity=0.172 Sum_probs=31.2
Q ss_pred eEEEeCCCCCCcHHHHHHHHcc-------CCCeEEEEEeeCCCCCCccc--EE-EEEeecHHHHHH
Q 028130 51 NLYVTGLSTRVTNADLEKFFGG-------EGKVTECHLVTDPRTRESCG--FA-FVTMETVEGADR 106 (213)
Q Consensus 51 ~v~V~nLp~~~t~~~L~~~F~~-------~G~i~~~~i~~~~~t~~~~g--~a-fV~f~~~~~a~~ 106 (213)
.|.+..|...++++++.++... .-.|..+.+-.+.. +...+ ++ +++|++.++.+.
T Consensus 24 HIVlfklK~~~s~e~~~~~~~~l~~L~~~ip~i~~~~~G~~~s-~~~~g~d~~l~~~F~s~edl~~ 88 (116)
T 3bgu_A 24 HIALFRWNDTVTPDQVEQVITALSKLPAAIPELKNYAFGADLG-LAAGNYDFAVVADLDGEDGFRA 88 (116)
T ss_dssp EEEEEEECTTCCHHHHHHHHHHHHHCCCCCTTEEEEEEEECCS-CSTTCCSEEEEEEEEHHHHHHH
T ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHhhcCCceEEEEEccCCC-CCCCCeeEEEEEEECCHHHHHH
Confidence 3455678888887765555432 34556666555432 22223 44 457887776653
No 287
>3bb5_A Stress responsive alpha-beta protein; dimeric ferredoxin-like protein, structural genomics, joint for structural genomics, JCSG; HET: CIT; 2.30A {Jannaschia SP}
Probab=30.82 E-value=1.3e+02 Score=20.60 Aligned_cols=56 Identities=11% Similarity=0.041 Sum_probs=33.1
Q ss_pred eEEEeCCCCCCcHHHHHHHHc-------cCCCeEEEEEeeCCCC-CCccc--EE-EEEeecHHHHHH
Q 028130 51 NLYVTGLSTRVTNADLEKFFG-------GEGKVTECHLVTDPRT-RESCG--FA-FVTMETVEGADR 106 (213)
Q Consensus 51 ~v~V~nLp~~~t~~~L~~~F~-------~~G~i~~~~i~~~~~t-~~~~g--~a-fV~f~~~~~a~~ 106 (213)
.|.+..|...++++++.+++. +.-.|..+.+-.+... +...+ ++ +++|++.++.+.
T Consensus 23 HIVlfklK~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~s~e~~~~g~~~~l~~~F~s~e~l~~ 89 (121)
T 3bb5_A 23 HLVMLEPEGEGAMDRIMEAMAILDGLAPELPGLTEFRHGPNRDFEQKSERYPYGFLCTFTDKAALDA 89 (121)
T ss_dssp EEEEECBCSTTHHHHHHHHHHHHHHHGGGCTTEEEEEEEEBCCTTSSCTTCCEEEEEEESSHHHHHH
T ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHHhcCCCeEEEEECCCCCccccCCCeeEEEEEEECCHHHHHH
Confidence 455668888888776555443 3556777766554431 22233 44 457888776654
No 288
>2yko_A LINE-1 ORF1P; RNA-binding protein, genome evolution, nucleic acid chaperon coiled-coil; HET: MSE; 2.10A {Homo sapiens} PDB: 2ykp_A 2ykq_A 2ldy_A
Probab=30.52 E-value=1.4e+02 Score=23.47 Aligned_cols=76 Identities=18% Similarity=0.250 Sum_probs=39.8
Q ss_pred CCeEEEeCCCCCCc--HHHHHHHHc----c-CCC--------eEEEEEeeC---CCCCCcccEEEEEeecHHHHHHHHH-
Q 028130 49 GNNLYVTGLSTRVT--NADLEKFFG----G-EGK--------VTECHLVTD---PRTRESCGFAFVTMETVEGADRCIK- 109 (213)
Q Consensus 49 ~~~v~V~nLp~~~t--~~~L~~~F~----~-~G~--------i~~~~i~~~---~~t~~~~g~afV~f~~~~~a~~Ai~- 109 (213)
.+.|.|-|||.... +..++.+|. . |.. |..+.-... .....+ -..+|.|....+-++.|.
T Consensus 52 r~NIRIiGVPEgee~~~kgaenlf~eII~EnfPnL~ke~diqV~ea~Rsp~~~~~kr~tP-R~IIvK~~~~~~KErILka 130 (233)
T 2yko_A 52 RPNLRLIGVPESDVENGTKLENTLQDIIQENFPNLARQANVQIQEIQRTPQRYSSRRATP-RHIIVRFTKVEMKEKMLRA 130 (233)
T ss_dssp TTEEEEESCCCCTTCCHHHHHHHHHHHHHHHCTTCC---CCCEEEEEEC-------CCSC-CCEEEEESSHHHHHHHHHH
T ss_pred ccceeEeecCCCcccccccHHHHHHHHHHHhCCCCccccceeeechhcCCCCCCCCCCCC-CeEEEEecccccHHHHHHH
Confidence 46899999998765 333333332 1 322 222221111 111122 356777776655555444
Q ss_pred --HhCCceeCCeeeEEEe
Q 028130 110 --YLNRSVLEGRLITVEK 125 (213)
Q Consensus 110 --~l~g~~i~g~~i~V~~ 125 (213)
......+.|.+|.+..
T Consensus 131 aR~k~~vtykG~pIrlsa 148 (233)
T 2yko_A 131 AREKGRVTLKGKPIRLTV 148 (233)
T ss_dssp HHTTSCEEETTEEEEEEE
T ss_pred HHHhcccccCCCceEEeC
Confidence 3456678999887754
No 289
>2d8m_A DNA-repair protein XRCC1; parallel beta-sheet, DNA ligase III, poly(ADP-ribose) polymerase-1, DNA polymerase beta, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=30.33 E-value=53 Score=22.84 Aligned_cols=30 Identities=13% Similarity=0.082 Sum_probs=24.4
Q ss_pred CCCCCeEEEeCCCCCCcHHHHHHHHccCCCe
Q 028130 46 ANPGNNLYVTGLSTRVTNADLEKFFGGEGKV 76 (213)
Q Consensus 46 ~~~~~~v~V~nLp~~~t~~~L~~~F~~~G~i 76 (213)
.-.+.+|+|.++. ..+.++|+.++..+|..
T Consensus 22 ~f~g~~i~itG~~-~~~r~~l~~~i~~~Gg~ 51 (129)
T 2d8m_A 22 ILQGVVVVLSGFQ-NPFRSELRDKALELGAK 51 (129)
T ss_dssp TSTTEEEEEESCC-TTHHHHHHHHHHHTTEE
T ss_pred cCCCeEEEEeCCC-cHHHHHHHHHHHHcCCE
Confidence 4567889999887 56788999999999865
No 290
>3swz_A Steroid 17-alpha-hydroxylase/17,20 lyase; cytochrome P450, CYP17A1, P450C17, P450 17A1, monooxyg 17A-hydroxylase, heme protein; HET: HEM TOK; 2.40A {Homo sapiens} PDB: 3ruk_A*
Probab=30.30 E-value=54 Score=27.65 Aligned_cols=50 Identities=12% Similarity=-0.011 Sum_probs=35.8
Q ss_pred eEEEeCCCCCC----cHHHHHHHHccCCCeEEEEEeeCCCCCCcccEEEEEeecHHHHHHHHH
Q 028130 51 NLYVTGLSTRV----TNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIK 109 (213)
Q Consensus 51 ~v~V~nLp~~~----t~~~L~~~F~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~Ai~ 109 (213)
.-+||||..-. ....+.++..+||.|..+.+. +.-+|...+.+.|+.++.
T Consensus 16 lPliGnl~~l~~~~~~~~~~~~~~~kYG~i~~~~~g---------~~~~vvv~~p~~~k~il~ 69 (494)
T 3swz_A 16 LPLVGSLPFLPRHGHMHNNFFKLQKKYGPIYSVRMG---------TKTTVIVGHHQLAKEVLI 69 (494)
T ss_dssp CCEEEEESSCTTSSCHHHHHHHTHHHHCSEEEEEET---------TEEEEEECSHHHHHHHHT
T ss_pred CCeEcchHHhCCCCchhHHHHHHHHHcCCEEEEEeC---------CCCEEEECCHHHHHHHHH
Confidence 44688876432 245677888899999887763 245677788888888875
No 291
>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*
Probab=30.18 E-value=33 Score=26.86 Aligned_cols=30 Identities=17% Similarity=0.017 Sum_probs=23.0
Q ss_pred CeEEEeCCCCCCcHHHHHHHHccCCCeEEE
Q 028130 50 NNLYVTGLSTRVTNADLEKFFGGEGKVTEC 79 (213)
Q Consensus 50 ~~v~V~nLp~~~t~~~L~~~F~~~G~i~~~ 79 (213)
..+.|+|||..++...|..++.....+..+
T Consensus 96 ~~~vv~NlPy~i~~~il~~ll~~~~~~~~~ 125 (249)
T 3ftd_A 96 ELKVVGNLPYNVASLIIENTVYNKDCVPLA 125 (249)
T ss_dssp SEEEEEECCTTTHHHHHHHHHHTGGGCSEE
T ss_pred CcEEEEECchhccHHHHHHHHhcCCCCceE
Confidence 358899999999999999988765444333
No 292
>2qrr_A Methionine import ATP-binding protein METN; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; 1.71A {Vibrio parahaemolyticus} SCOP: d.58.18.13
Probab=29.27 E-value=1.2e+02 Score=19.85 Aligned_cols=62 Identities=10% Similarity=-0.012 Sum_probs=36.8
Q ss_pred eEEEeCCCCCCcHHHHHHHHccCCCeEEEEEe-eCCCCCCcccEEEEEeec-HHHHHHHHHHhC
Q 028130 51 NLYVTGLSTRVTNADLEKFFGGEGKVTECHLV-TDPRTRESCGFAFVTMET-VEGADRCIKYLN 112 (213)
Q Consensus 51 ~v~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~-~~~~t~~~~g~afV~f~~-~~~a~~Ai~~l~ 112 (213)
.|.|.-....+.+..|-++..+||--.+|..- .+.-.+...|+-+|++.- .++.++|+..|.
T Consensus 25 lv~l~f~g~~~~~pvis~l~~~~~v~vnIl~g~i~~i~~~~~G~L~v~l~G~~~~~~~ai~~L~ 88 (101)
T 2qrr_A 25 LVRMEFTGATVDAPLMSQISRKYNIDVSILSSDLDYAGGVKFGMMVAELFGNEQDDSAAIEYLR 88 (101)
T ss_dssp EEEEEECTTSCSSCHHHHHHHHSCCEEEEEEEEEEEETTEEEEEEEEEEESCHHHHHHHHHHHH
T ss_pred EEEEEEcCCCcCchHHHHHHHHhCCCEEEEEeeeeEcCCeeEEEEEEEEeCCHHHHHHHHHHHH
Confidence 45554444556666777888888854333211 122245566888888874 455677777764
No 293
>3iwl_A Copper transport protein ATOX1; beta-alpha-beta-BETA-alpha-beta, cisplatin, platinum, chaperone, ION transport, metal-binding, metal transport; HET: TCE; 1.60A {Homo sapiens} SCOP: d.58.17.1 PDB: 1fe4_A* 1fee_A* 1tl4_A 1tl5_A 2k1r_B 1fe0_A* 3iwx_A 3cjk_A
Probab=28.90 E-value=91 Score=18.23 Aligned_cols=52 Identities=10% Similarity=0.123 Sum_probs=34.6
Q ss_pred CeEEEeCCCCCCcHHHHHHHHccCCCeEEEEEeeCCCCCCcccEEEEEee-cHHHHHHHHH
Q 028130 50 NNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTME-TVEGADRCIK 109 (213)
Q Consensus 50 ~~v~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~t~~~~g~afV~f~-~~~~a~~Ai~ 109 (213)
.++.| ++.-..-...|+..+.+...| .+.+.... +-+.|++. +.++..++|+
T Consensus 4 ~~~~v-gm~C~~C~~~i~~~l~~~~gV-~v~v~~~~------~~~~v~~~~~~~~i~~~i~ 56 (68)
T 3iwl_A 4 HEFSV-DMTCGGCAEAVSRVLNKLGGV-KYDIDLPN------KKVCIESEHSMDTLLATLK 56 (68)
T ss_dssp EEEEE-CCCSHHHHHHHHHHHHHHCSE-EEEEETTT------TEEEEEESSCHHHHHHHHH
T ss_pred EEEEE-CcCcHHHHHHHHHHHHcCCCe-EEEEEcCC------CEEEEEecCCHHHHHHHHH
Confidence 35677 887666677788888887777 77766543 35667764 4555566665
No 294
>2kkh_A Putative heavy metal transporter; zinc transport, metal binding, metal selectivity, ferredoxin fold, ATP-binding, hydrolase; NMR {Arabidopsis thaliana}
Probab=28.41 E-value=1.1e+02 Score=19.13 Aligned_cols=56 Identities=11% Similarity=0.114 Sum_probs=39.1
Q ss_pred CeEEEeCCCCCCcHHHHHHHHccCCCeEEEEEeeCCCCCCcccEEEEEeec----HHHHHHHHHHh
Q 028130 50 NNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMET----VEGADRCIKYL 111 (213)
Q Consensus 50 ~~v~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~t~~~~g~afV~f~~----~~~a~~Ai~~l 111 (213)
.++.|.++....-...|+..+.....|..+.+.... +.+.|.|.. .+....+|..+
T Consensus 18 ~~~~v~gm~C~~C~~~ie~~l~~~~GV~~~~v~~~~------~~~~v~~~~~~~~~~~i~~~i~~~ 77 (95)
T 2kkh_A 18 SYFDVLGICCTSEVPIIENILKSLDGVKEYSVIVPS------RTVIVVHDSLLISPFQIAKALNEA 77 (95)
T ss_dssp EEEEETTCCTTTTHHHHHHHHHHSSSEEEEEEETTT------TEEEEEECTTTCCHHHHHHHHHHH
T ss_pred EEEEECCcCCHHHHHHHHHHHhcCCCeeEEEEEccC------CEEEEEECCCCCCHHHHHHHHHHc
Confidence 457788888777778889999888778777765432 478888864 34455566544
No 295
>2g1d_A 30S ribosomal protein S24E; complete proteome, ribosome; NMR {Thermoplasma acidophilum} SCOP: d.12.1.3
Probab=28.04 E-value=56 Score=21.99 Aligned_cols=46 Identities=11% Similarity=0.154 Sum_probs=22.2
Q ss_pred CCCcHHHHHHHHcc-CC---CeEEE-EEeeCCCCCCcccEEEEEeecHHHHH
Q 028130 59 TRVTNADLEKFFGG-EG---KVTEC-HLVTDPRTRESCGFAFVTMETVEGAD 105 (213)
Q Consensus 59 ~~~t~~~L~~~F~~-~G---~i~~~-~i~~~~~t~~~~g~afV~f~~~~~a~ 105 (213)
.+++..+|++.+.+ |+ .+..| .|......+++.|||.| |++.+.|.
T Consensus 29 ~tpsk~eirekLA~~~~~~~~~vvv~~~~t~fG~gks~G~a~I-Yds~e~~k 79 (98)
T 2g1d_A 29 RTPSREEIKELIAKHEGVDKELVIVDNNKQLTGKHEIEGYTKI-YADKPSAM 79 (98)
T ss_dssp SCCCHHHHHHHHHHHHHSCSTTEECCCCCCCSSSSEEEEEEEE-ESHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHH
Confidence 35667777766554 33 22222 22223334556666655 44444443
No 296
>2k2p_A Uncharacterized protein ATU1203; putative metal-binding domain ATU1203, ontario centre for ST proteomics, structural genomics; NMR {Agrobacterium tumefaciens str}
Probab=27.90 E-value=61 Score=20.36 Aligned_cols=56 Identities=7% Similarity=-0.085 Sum_probs=35.9
Q ss_pred CeEEEeCCCCCCcHHHHHHHHccCCCeEEEEEeeCCCCCCcccEEEEEee-cHHHHHHHHHHh
Q 028130 50 NNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTME-TVEGADRCIKYL 111 (213)
Q Consensus 50 ~~v~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~t~~~~g~afV~f~-~~~~a~~Ai~~l 111 (213)
.+|.|.++.-..-...|+..+.+...|..+.+.... +.+.|+|. +.++..++|+.+
T Consensus 24 ~~l~V~Gm~C~~C~~~Ie~aL~~~~GV~~v~v~l~~------~~~~V~~~~~~~~i~~~i~~~ 80 (85)
T 2k2p_A 24 LSFHVEDMTCGHCAGVIKGAIEKTVPGAAVHADPAS------RTVVVGGVSDAAHIAEIITAA 80 (85)
T ss_dssp EEEECTTCCHHHHHHHHHHHHHHHSTTCEEEEETTT------TEEEEESCCCHHHHHHHHHHT
T ss_pred EEEEECCCCCHHHHHHHHHHHhcCCCeeEEEEECCC------CEEEEEecCCHHHHHHHHHHc
Confidence 356777777655567788888887677777765432 46777764 345556666643
No 297
>3pm0_A Cypib1, cytochrome P450 1B1; CYP1B1, monooxygenase, alpha-naphthoflavone, 17BETA-estradiol, oxidoreductase; HET: HEM BHF; 2.70A {Homo sapiens}
Probab=27.90 E-value=70 Score=26.94 Aligned_cols=49 Identities=8% Similarity=0.127 Sum_probs=29.1
Q ss_pred EEEeCCCCC--CcHHHHHHHHccCCCeEEEEEeeCCCCCCcccEEEEEeecHHHHHHHHH
Q 028130 52 LYVTGLSTR--VTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIK 109 (213)
Q Consensus 52 v~V~nLp~~--~t~~~L~~~F~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~Ai~ 109 (213)
-+|||+..- -....+.++..+||.|..+.+. +.-+|...+.+.++.++.
T Consensus 18 P~iG~~~~~~~~~~~~~~~~~~~yG~i~~~~~g---------~~~~vvv~dp~~i~~il~ 68 (507)
T 3pm0_A 18 PLIGNAAAVGQAAHLSFARLARRYGDVFQIRLG---------SCPIVVLNGERAIHQALV 68 (507)
T ss_dssp ----------CCHHHHHHHHHHHHCSEEEEEET---------TEEEEEECSHHHHHHHHT
T ss_pred CeeCchhhcCccHHHHHHHHHHHhCCEEEEEEC---------CccEEEECCHHHHHHHHH
Confidence 456776532 2345677888899998877653 355777788888888874
No 298
>2ns6_A Mobilization protein A; nickase, 5-strand antiparallel beta sheet, metalloenzyme, hydrolase; 2.10A {Pseudomonas aeruginosa}
Probab=26.88 E-value=1.3e+02 Score=22.55 Aligned_cols=48 Identities=10% Similarity=0.046 Sum_probs=31.9
Q ss_pred eEEEeCCCCCCcHHH--------HHHHHccCCCeEEEEEeeCCCCCCcccEEEEEeecH
Q 028130 51 NLYVTGLSTRVTNAD--------LEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETV 101 (213)
Q Consensus 51 ~v~V~nLp~~~t~~~--------L~~~F~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~ 101 (213)
.=||-.||.+++.++ ++++|..+|-|..+.|..+.. .+ -.|.|.|.+.
T Consensus 72 re~~iALP~EL~~eq~~~L~~~f~~~~~~~~G~~~d~AIH~~~~--~N-pHaHim~t~R 127 (185)
T 2ns6_A 72 KEVEFALPVELTLDQQKALASEFAQHLTGAERLPYTLAIHAGGG--EN-PHCHLMISER 127 (185)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHHHHHTTTTCCEEEEEEEETT--TE-EEEEEEECCB
T ss_pred EEEEEECCccCCHHHHHHHHHHHHHHHHHhcCCEEEEEEEcCCC--CC-ceEEEEEeec
Confidence 445667999988765 345566788888888876321 22 3788877653
No 299
>3h7h_B Transcription elongation factor SPT5; helices surrounding beta sheet, activator, ME binding, nucleus, repressor, transcription regulation; 1.55A {Homo sapiens}
Probab=26.65 E-value=50 Score=22.51 Aligned_cols=25 Identities=12% Similarity=0.181 Sum_probs=20.9
Q ss_pred cccEEEEEeecHHHHHHHHHHhCCc
Q 028130 90 SCGFAFVTMETVEGADRCIKYLNRS 114 (213)
Q Consensus 90 ~~g~afV~f~~~~~a~~Ai~~l~g~ 114 (213)
.+||-|||=.+..++..||+.+.+.
T Consensus 50 lkGyIyVEA~~~~~V~~ai~gi~~v 74 (106)
T 3h7h_B 50 VKGYIYVEAYKQTHVKQAIEGVGNL 74 (106)
T ss_dssp CCSEEEEEESSHHHHHHHHTTCGGG
T ss_pred CceEEEEEeCCHHHHHHHHhcccce
Confidence 4589999999999999998866544
No 300
>2okq_A Hypothetical protein YBAA; YBAA protein, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; 1.80A {Shigella flexneri} SCOP: d.58.4.18
Probab=26.13 E-value=1.6e+02 Score=21.15 Aligned_cols=46 Identities=13% Similarity=0.143 Sum_probs=29.9
Q ss_pred HHHHHccCCCeEEEEEeeCC-----C----------CCCcccEEEEEeecHHHHHHHHHHh
Q 028130 66 LEKFFGGEGKVTECHLVTDP-----R----------TRESCGFAFVTMETVEGADRCIKYL 111 (213)
Q Consensus 66 L~~~F~~~G~i~~~~i~~~~-----~----------t~~~~g~afV~f~~~~~a~~Ai~~l 111 (213)
..++|..||.+..+....+. . .+..--|.+|+|.+.+...++.+++
T Consensus 50 a~~vfke~GAl~~vEcWgdDVp~Gk~TsF~~AVkak~dEtVVFSWi~wPsKa~RDa~~~kv 110 (141)
T 2okq_A 50 AAPLFKEFGALRIVECWASDVPDGKVTDFRMAVKAEENEEVVFSWIEYPSKEVRDAANQKM 110 (141)
T ss_dssp HHHHHHHTTCSEEEEEEEEECCCCSSCCHHHHTTCCTTEEEEEEEEEESCHHHHHHHHHHH
T ss_pred HHHHHHHhCCeeeeeeecccCCCCcccCHHHHhcCCCCCEEEEEEEEcCCHHHHHHHHHHh
Confidence 34679999988666543221 1 1222348999999998888877543
No 301
>2nzc_A Hypothetical protein; sturctural genomics, TM1266, structural genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.95A {Thermotoga maritima} SCOP: d.58.18.14
Probab=25.88 E-value=1.3e+02 Score=19.62 Aligned_cols=74 Identities=9% Similarity=0.140 Sum_probs=40.1
Q ss_pred CeEEEeCCC---CCCcHHHHHHHHccCCCeEEEEEeeCCCCCCcccEEEEEeecHHHHHHHHH-HhCCceeCCeeeEEEe
Q 028130 50 NNLYVTGLS---TRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIK-YLNRSVLEGRLITVEK 125 (213)
Q Consensus 50 ~~v~V~nLp---~~~t~~~L~~~F~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~Ai~-~l~g~~i~g~~i~V~~ 125 (213)
+.++|-++- .+..+.++.++|.+||.+....+=.+.. .+..+.-.|.+.-.++...||. +|. .|.|-.++.-+
T Consensus 5 ~ri~vigIiVe~r~~~a~kvn~iL~~yg~~I~gRmGiP~~-~~~~~iIsl~v~~~~d~I~aL~gkLg--~i~GV~vKt~~ 81 (86)
T 2nzc_A 5 KRFYILTIVVEDREKAYRQVNELLHNFSEDILLRVGYPVR-EENMAIIFLVLKTDNDTIGALSGKLG--QISGVRVKTVP 81 (86)
T ss_dssp CEEEEEEEEEESCHHHHHHHHHHHHHTGGGEEEEEEEEEG-GGTEEEEEEEEEECHHHHHHHHHHHH--TSTTEEEEEEE
T ss_pred eeEEEEEEEEeCchhhHHHHHHHHHhccCEEEEEcCCCcC-cCCceEEEEEEECCHHHHHHHHHHhC--CCCCEEEEEEE
Confidence 345544432 2334447999999999987665533321 2333455566665555555553 332 25665555444
Q ss_pred c
Q 028130 126 A 126 (213)
Q Consensus 126 a 126 (213)
.
T Consensus 82 ~ 82 (86)
T 2nzc_A 82 L 82 (86)
T ss_dssp C
T ss_pred e
Confidence 3
No 302
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=25.74 E-value=1.7e+02 Score=20.26 Aligned_cols=53 Identities=9% Similarity=0.199 Sum_probs=39.3
Q ss_pred CCCCCCcHHHHHHHHccCCCeEEEEEeeCCCCCCcccEEEEEeecHHHHHHHHHHhCC
Q 028130 56 GLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNR 113 (213)
Q Consensus 56 nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~Ai~~l~g 113 (213)
.++... .+++.+.+..+-+|..|.... |..--++.|.+.+.++.+..+..+.+
T Consensus 72 ~~~~~~-~~~~~~~l~~~p~V~~~~~~t----G~~d~~~~v~~~~~~~l~~~~~~l~~ 124 (144)
T 2cfx_A 72 TVKNAD-YERFKSYIQTLPNIEFCYRIA----GAACYMLKINAESLEAVEDFINKTSP 124 (144)
T ss_dssp EEGGGC-HHHHHHHHHTCTTEEEEEEEE----SSSSEEEEEEESSHHHHHHHHHHHTT
T ss_pred EECccc-HHHHHHHHhcChhhheeeeee----CCCCEEEEEEECCHHHHHHHHHHhcC
Confidence 344432 567888888999999998764 22224778889999999999988865
No 303
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=25.60 E-value=1.9e+02 Score=20.89 Aligned_cols=52 Identities=6% Similarity=0.033 Sum_probs=37.6
Q ss_pred CCCCCCcHHHHHHHHccCCCeEEEEEeeCCCCCCcccEEEEEeecHHHHHHHHHHhC
Q 028130 56 GLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLN 112 (213)
Q Consensus 56 nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~Ai~~l~ 112 (213)
.++. ...+++.+.+.++-+|..|... +|..--++.|.+.+.++.+..++.+.
T Consensus 94 ~~~~-~~~~~v~~~l~~~peV~~~~~v----tG~~d~l~~v~~~d~~~l~~~l~~l~ 145 (171)
T 2e1c_A 94 KVKA-GKYSEVASNLAKYPEIVEVYET----TGDYDMVVKIRTKNSEELNNFLDLIG 145 (171)
T ss_dssp EECT-TCHHHHHHHHHTSTTEEEEEEC----SSSSSEEEEEEESSHHHHHHHHHHHH
T ss_pred EECc-chHHHHHHHHhcCcCeEEEEEe----eCCCCEEEEEEECCHHHHHHHHHHHh
Confidence 4443 3457788889999999999876 34333467788999999888876553
No 304
>1uta_A FTSN, MSGA, cell division protein FTSN; bacterial cell division protein, RNP domain, transmembrane, inner membrane, repeat; NMR {Escherichia coli} SCOP: d.58.52.1
Probab=25.38 E-value=13 Score=23.64 Aligned_cols=68 Identities=10% Similarity=-0.009 Sum_probs=40.6
Q ss_pred CCCCeEEEeCCCCCCcHHHHHHHHccCCCeEEEEEeeCCCCCCcccEEEEEeecHHHHHHHHHHhCCceeCCe
Q 028130 47 NPGNNLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNRSVLEGR 119 (213)
Q Consensus 47 ~~~~~v~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~ 119 (213)
.....|.|+-+....+.+.|.+-+...|-...|. .. +.---.-+--|.+.++|++++..|...-+.+.
T Consensus 7 ~~~~~vQvGaF~~~~~A~~l~~~L~~~G~~a~i~--~~---~~~yRV~vGpf~s~~~A~~~~~~L~~~g~~~~ 74 (81)
T 1uta_A 7 ERRWMVQCGSFRGAEQAETVRAQLAFEGFDSKIT--TN---NGWNRVVIGPVKGKENADSTLNRLKMAGHTNC 74 (81)
T ss_dssp CCBCCCBCCEESCHHHHHHHHHHHHHHTCCEEEE--EC---SSSEEEEESSCBTTTHHHHHHHHHHHHCCSCC
T ss_pred CccEEEEEEEcCCHHHHHHHHHHHHhCCCCeEEE--eC---CcEEEEEECCcCCHHHHHHHHHHHHHcCCCcE
Confidence 3456788888887777777877777666433332 11 11111122256788999999888865434443
No 305
>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24
Probab=25.26 E-value=54 Score=27.34 Aligned_cols=22 Identities=9% Similarity=0.122 Sum_probs=18.7
Q ss_pred eEEEeCCCCCCcHHHHHHHHcc
Q 028130 51 NLYVTGLSTRVTNADLEKFFGG 72 (213)
Q Consensus 51 ~v~V~nLp~~~t~~~L~~~F~~ 72 (213)
.++|+|||..++..-|..+|..
T Consensus 144 ~~vvaNLPYnIstpil~~ll~~ 165 (353)
T 1i4w_A 144 FLTVANVTGEGSEGLIMQWLSC 165 (353)
T ss_dssp EEEEEECCSTTHHHHHHHHHHH
T ss_pred eEEEEECCCchHHHHHHHHHHh
Confidence 5789999999999988887763
No 306
>2lsl_A Telomerase associated protein P65; LA protein, LARP7, RRM, RNA BI protein; NMR {Tetrahymena thermophila}
Probab=30.60 E-value=16 Score=24.75 Aligned_cols=22 Identities=18% Similarity=0.226 Sum_probs=18.0
Q ss_pred ccEEEEEeecHHHHHHHHHHhC
Q 028130 91 CGFAFVTMETVEGADRCIKYLN 112 (213)
Q Consensus 91 ~g~afV~f~~~~~a~~Ai~~l~ 112 (213)
.|-|.|.|.+.++..-||..|-
T Consensus 77 egqamirfqnsdeqrlaiqkll 98 (137)
T 2lsl_A 77 EGQAMIRFQNSDEQRLAIQKLL 98 (137)
Confidence 3789999999988888887663
No 307
>2uuu_A Alkyldihydroxyacetonephosphate synthase; transferase, lavoprotein, lipid synthesis, peroxisomal disor; HET: FAD PL3; 1.95A {Dictyostelium discoideum} PDB: 2uuv_A*
Probab=24.54 E-value=49 Score=29.58 Aligned_cols=49 Identities=10% Similarity=0.102 Sum_probs=32.5
Q ss_pred HHHHHHHHc----cCCCeEEEEEeeCCCCCCcccEEEEEeecHHHHHHHHHHhC
Q 028130 63 NADLEKFFG----GEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLN 112 (213)
Q Consensus 63 ~~~L~~~F~----~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~Ai~~l~ 112 (213)
..+|..+|. .+|-|+.+.+...+. .....++++.|.+.++|.+|+..+.
T Consensus 287 g~dl~~~~~GseGtlGIIT~~tlrl~p~-p~~~~~~~~~f~~~~~a~~~~~~~~ 339 (584)
T 2uuu_A 287 GINYKHIILGSEGTLGIITEAVMKVHAV-PQAVEYYGFLFPTFAHAVSALQQIR 339 (584)
T ss_dssp CCCTHHHHTTCTTSSCEEEEEEEECEEC-CSEEEEEEEEESSHHHHHHHHHHHH
T ss_pred CcchhhhhccCCCCcEEEEEEEEEEEec-ccceEEEEEEcCCHHHHHHHHHHHH
Confidence 345655553 457788887765542 2233577899999999988887653
No 308
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=23.50 E-value=1.9e+02 Score=20.12 Aligned_cols=53 Identities=6% Similarity=0.031 Sum_probs=38.6
Q ss_pred CCCCCCcHHHHHHHHccCCCeEEEEEeeCCCCCCcccEEEEEeecHHHHHHHHHHhCC
Q 028130 56 GLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYLNR 113 (213)
Q Consensus 56 nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~Ai~~l~g 113 (213)
.++. ...+++.+.+..+-+|..|... +|..--++.|.+.+.++.+..++.+..
T Consensus 74 ~~~~-~~~~~~~~~l~~~p~V~~~~~~----tG~~d~~~~v~~~d~~~l~~~~~~l~~ 126 (151)
T 2cyy_A 74 KVKA-GKYSEVASNLAKYPEIVEVYET----TGDYDMVVKIRTKNSEELNNFLDLIGS 126 (151)
T ss_dssp EECT-TCHHHHHHHHHTCTTEEEEEEC----SSSSSEEEEEEESSHHHHHHHHHHHHT
T ss_pred EECc-ccHHHHHHHHhcCCCeeEeeEe----cCCCCEEEEEEECCHHHHHHHHHHHhC
Confidence 4443 3457788899999999999876 343334677889999999888866644
No 309
>2exu_A Transcription initiation protein SPT4/SPT5; helixs surrounding beta sheet; 2.23A {Saccharomyces cerevisiae}
Probab=23.08 E-value=98 Score=23.66 Aligned_cols=26 Identities=4% Similarity=-0.000 Sum_probs=22.4
Q ss_pred cccEEEEEeecHHHHHHHHHHhCCce
Q 028130 90 SCGFAFVTMETVEGADRCIKYLNRSV 115 (213)
Q Consensus 90 ~~g~afV~f~~~~~a~~Ai~~l~g~~ 115 (213)
-+||.|||=.+..++..||+.+.+..
T Consensus 148 lkGYIyVEA~~~~~V~~ai~Gi~~vy 173 (200)
T 2exu_A 148 YTGRIYIEAPKQSVIEKFCNGVPDIY 173 (200)
T ss_dssp STTEEEEECSCHHHHHHHHTTCTTEE
T ss_pred CcEEEEEEECCHHHHHHHHhhhhhhh
Confidence 45899999999999999998877753
No 310
>3mfb_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.20A {Erwinia carotovora}
Probab=23.00 E-value=1.3e+02 Score=22.05 Aligned_cols=36 Identities=17% Similarity=0.192 Sum_probs=26.3
Q ss_pred CcHHHHHHHHccCCCe---EEEEEeeCCCCCCcccEEEE
Q 028130 61 VTNADLEKFFGGEGKV---TECHLVTDPRTRESCGFAFV 96 (213)
Q Consensus 61 ~t~~~L~~~F~~~G~i---~~~~i~~~~~t~~~~g~afV 96 (213)
.++++|.++-.+.|.+ ..+.|..+..+|..+.+||-
T Consensus 3 ~t~~~L~~~A~~~gta~trVR~~~~~de~~G~~~v~gv~ 41 (157)
T 3mfb_A 3 LTPEKLLEAANKQGTVPSRVRYQWMEDEETGRLKAVGYH 41 (157)
T ss_dssp CCHHHHHHHHHTTCEEEBSEEEEEEECTTTCCEEEEEEE
T ss_pred cCHHHHHHHHHhCCcccccEEEEEEecCCCCcEEEEEEE
Confidence 5789999999999987 34566655447777766664
No 311
>3u5e_X 60S ribosomal protein L25; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_K 2ww9_K 3izc_X 3izs_X 2wwb_K 3o5h_W 3o58_W 3u5i_X 4b6a_X 1s1i_T 3jyw_T
Probab=21.52 E-value=1.1e+02 Score=22.12 Aligned_cols=58 Identities=16% Similarity=0.153 Sum_probs=36.9
Q ss_pred eEEEeCCCCCCcHHHHHHHHcc-CC-CeEEEEEeeCCCCCCcccEEEEEeecHHHHHHHHHHh
Q 028130 51 NLYVTGLSTRVTNADLEKFFGG-EG-KVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYL 111 (213)
Q Consensus 51 ~v~V~nLp~~~t~~~L~~~F~~-~G-~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~Ai~~l 111 (213)
..||.-+....+..+|++.+++ |+ .|..|..+..+. + .--|||.+....+|.+....+
T Consensus 80 N~~vF~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~~-g--~KKAyV~L~~~~daldvAnki 139 (142)
T 3u5e_X 80 NILVFQVSMKANKYQIKKAVKELYEVDVLKVNTLVRPN-G--TKKAYVRLTADYDALDIANRI 139 (142)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHHHSCCEEEEEEEECTT-S--CEEEEEEECTTCCHHHHHHHH
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHhCCceeEEEeeEcCC-C--ceEEEEEeCCCCcHHHHHHhh
Confidence 3455557778888888887776 44 455665544332 1 125999998777776655433
No 312
>4a17_R RPL23A, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_R 4a1c_R 4a1e_R
Probab=21.43 E-value=1e+02 Score=22.46 Aligned_cols=58 Identities=14% Similarity=0.120 Sum_probs=37.0
Q ss_pred eEEEeCCCCCCcHHHHHHHHcc-CC-CeEEEEEeeCCCCCCcccEEEEEeecHHHHHHHHHHh
Q 028130 51 NLYVTGLSTRVTNADLEKFFGG-EG-KVTECHLVTDPRTRESCGFAFVTMETVEGADRCIKYL 111 (213)
Q Consensus 51 ~v~V~nLp~~~t~~~L~~~F~~-~G-~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~Ai~~l 111 (213)
..||.-+....+..+|++.+++ |+ .|..|..+..+. + .--|||.+....+|.+....+
T Consensus 88 N~~vF~Vd~kAnK~qIK~AVEklf~VkV~kVNTl~~p~-g--~KKAyV~La~~~dAldvAnki 147 (150)
T 4a17_R 88 NTMVFYVHNRSTKPQIKSAFEKLYNVKVRSVNTLNTIT-G--NKKAYIRLAADSDSLTLANKI 147 (150)
T ss_dssp SEEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECTT-S--CEEEEEEECSSSCHHHHHHHH
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHhCCceeEEEeeEcCC-C--cEEEEEEcCCCCcHHHHHHhh
Confidence 3455557778898888887776 44 455665544332 2 125999998777776655433
No 313
>4id3_A DNA repair protein REV1; BRCT domain, protein binding; HET: DNA; 1.97A {Saccharomyces cerevisiae S288C}
Probab=21.26 E-value=1e+02 Score=19.33 Aligned_cols=30 Identities=13% Similarity=0.191 Sum_probs=23.1
Q ss_pred CCCCCeEEEeCCCCCCcHHHHHHHHccCCCe
Q 028130 46 ANPGNNLYVTGLSTRVTNADLEKFFGGEGKV 76 (213)
Q Consensus 46 ~~~~~~v~V~nLp~~~t~~~L~~~F~~~G~i 76 (213)
.-.+.+|||.++... +.++|++++..+|..
T Consensus 7 ~f~g~~~~i~g~~~~-~~~~l~~~i~~~GG~ 36 (92)
T 4id3_A 7 IFKNCVIYINGYTKP-GRLQLHEMIVLHGGK 36 (92)
T ss_dssp TTTTCEEEECSCCSS-CHHHHHHHHHHTTCE
T ss_pred ccCCEEEEEeCCCCc-CHHHHHHHHHHCCCE
Confidence 456789999986543 578899999998865
No 314
>2xmm_A SSR2857 protein, ATX1; metal transport, copper homeostasis, chaperone, P-type atpas; 1.65A {Synechocystis SP} PDB: 2xmv_A 1sb6_A 2xmj_A 2xmk_A 2xmt_A 2xmu_A
Probab=21.03 E-value=1.2e+02 Score=16.69 Aligned_cols=55 Identities=13% Similarity=0.052 Sum_probs=32.8
Q ss_pred eEEEeCCCCCCcHHHHHHHHccCCCeEEEEEeeCCCCCCcccEEEEEee-cHHHHHHHHHHh
Q 028130 51 NLYVTGLSTRVTNADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTME-TVEGADRCIKYL 111 (213)
Q Consensus 51 ~v~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~t~~~~g~afV~f~-~~~~a~~Ai~~l 111 (213)
++.|.++.-..-...++..+.+...|..+.+.... +.+.|++. +.+....+|..+
T Consensus 4 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~------~~~~v~~~~~~~~i~~~i~~~ 59 (64)
T 2xmm_A 4 QLTVPTIACEACAEAVTKAVQNEDAQATVQVDLTS------KKVTITSALGEEQLRTAIASA 59 (64)
T ss_dssp EEECTTCCSHHHHHHHHHHHHHHCTTCEEEECTTT------CEEEEECSSCHHHHHHHHHHT
T ss_pred EEEECCcCcHHHHHHHHHHHhcCCCcEEEEEEecC------CEEEEEecCCHHHHHHHHHHc
Confidence 46667776655566778888777667676665432 35566543 344455666543
No 315
>2qsw_A Methionine import ATP-binding protein METN 2; ABC transporter, structural genomics, APC87322.1, PSI-2, protein structure initiative; 1.50A {Enterococcus faecalis} SCOP: d.58.18.13
Probab=20.96 E-value=1.3e+02 Score=19.60 Aligned_cols=62 Identities=5% Similarity=-0.072 Sum_probs=34.4
Q ss_pred eEEEeCCCCCCcHHHHHHHHccCCCeEEEEEe-eCCCCCCcccEEEEEeec-HHHHHHHHHHhC
Q 028130 51 NLYVTGLSTRVTNADLEKFFGGEGKVTECHLV-TDPRTRESCGFAFVTMET-VEGADRCIKYLN 112 (213)
Q Consensus 51 ~v~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~-~~~~t~~~~g~afV~f~~-~~~a~~Ai~~l~ 112 (213)
.|.|.-....+.+..|-++..+||--.+|..- .+.-.+...|+-+|++.- .++.++|+..|.
T Consensus 25 lv~l~f~g~~~~~pvis~l~~~~~v~vnIl~g~i~~i~~~~~G~L~v~l~G~~~~~~~ai~~L~ 88 (100)
T 2qsw_A 25 IVRLLFHGEQAKLPIISHIVQEYQVEVSIIQGNIQQTKQGAVGSLYIQLLGEEQNILAAIEGLR 88 (100)
T ss_dssp EEEEEEESCSCSSCHHHHHHHHHTCEEEEEEEEEEEETTEEEEEEEEEEESCHHHHHHHHHHHH
T ss_pred EEEEEEcCCCcCchHHHHHHHHhCCCEEEEEeeceEcCCeeEEEEEEEEECCHHHHHHHHHHHH
Confidence 34443333445555667777777743333211 122244566888888874 456677877764
No 316
>2qyc_A Ferredoxin-like protein; stress responsive A/B barrel domain, structural genomics, JO center for structural genomics, JCSG; HET: MSE; 1.90A {Bordetella bronchiseptica RB50}
Probab=20.68 E-value=1.8e+02 Score=18.88 Aligned_cols=54 Identities=9% Similarity=0.028 Sum_probs=31.0
Q ss_pred EEEeCCCCCCcHHHHHHHHc-------cCCCeEEEEEeeCCCCCCccc--EE-EEEeecHHHHHH
Q 028130 52 LYVTGLSTRVTNADLEKFFG-------GEGKVTECHLVTDPRTRESCG--FA-FVTMETVEGADR 106 (213)
Q Consensus 52 v~V~nLp~~~t~~~L~~~F~-------~~G~i~~~~i~~~~~t~~~~g--~a-fV~f~~~~~a~~ 106 (213)
|.+..|...++++++.++.. +.-.|..+.+-.+.. +...+ ++ +++|++.++.+.
T Consensus 8 iVlfk~k~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~~-~~~~~~~~~~~~~F~s~e~l~~ 71 (103)
T 2qyc_A 8 VVMMEFDDGIDAGFFRTVDEYVARMKRECDGLLLYHFGENVA-ARSQGYTHATSSAFVDAAAHDA 71 (103)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHHHHHHSTTEEEEEEEECCC-TTCTTCCEEEEEEESSHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHhhhcCCCeEEEEECCCCC-CCCCCccEEEEEEECCHHHHHH
Confidence 44456788887766554443 355677777665543 22223 34 457887766543
No 317
>2e5p_A Protein PHF1, PHD finger protein 1; tudor domain, PHF1 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.66 E-value=36 Score=21.23 Aligned_cols=9 Identities=22% Similarity=0.386 Sum_probs=7.6
Q ss_pred cEEEEEeec
Q 028130 92 GFAFVTMET 100 (213)
Q Consensus 92 g~afV~f~~ 100 (213)
..|||.|++
T Consensus 38 ~~ClV~FeD 46 (68)
T 2e5p_A 38 EVCLVQFED 46 (68)
T ss_dssp TEEEEEETT
T ss_pred cEEEEEEcc
Confidence 589999976
No 318
>3dhx_A Methionine import ATP-binding protein METN; methionine uptake, regulation, amino-acid transport, ATP-BIN hydrolase, inner membrane, membrane; 2.10A {Escherichia coli} SCOP: d.58.18.13
Probab=20.34 E-value=1.1e+02 Score=20.49 Aligned_cols=55 Identities=15% Similarity=0.070 Sum_probs=32.9
Q ss_pred CCcHHHHHHHHccCCCeEEEEE-eeCCCCCCcccEEEEEee-cHHHHHHHHHHhCCc
Q 028130 60 RVTNADLEKFFGGEGKVTECHL-VTDPRTRESCGFAFVTME-TVEGADRCIKYLNRS 114 (213)
Q Consensus 60 ~~t~~~L~~~F~~~G~i~~~~i-~~~~~t~~~~g~afV~f~-~~~~a~~Ai~~l~g~ 114 (213)
.+.+..|-++..+||--.+|.. ..+.-.+...|..+|++. +.++.++|+..|...
T Consensus 32 ~~~~PiIs~l~~~~~v~vnIL~g~I~~i~~~~~G~L~v~l~G~~~~~~~ai~~L~~~ 88 (106)
T 3dhx_A 32 SVDAPLLSETARRFNVNNNIISAQMDYAGGVKFGIMLTEMHGTQQDTQAAIAWLQEH 88 (106)
T ss_dssp CTTCCHHHHHHHHSCCEEEEEEEEEEEETTEEEEEEEEEEESCHHHHHHHHHHHHHT
T ss_pred ccChhHHHHHHHHHCCCEEEEEEEeEEECCeeEEEEEEEEeCCHHHHHHHHHHHHHC
Confidence 4445567777788875433321 112224556788888887 455677787776543
No 319
>2nn4_A Hypothetical protein YQGQ; novel fold, PFAM:DUF910, structural genomics, PSI-2, protein structure initiative; 2.10A {Bacillus subtilis} SCOP: a.272.1.1
Probab=20.28 E-value=34 Score=21.75 Aligned_cols=17 Identities=18% Similarity=0.245 Sum_probs=14.2
Q ss_pred cHHHHHHHHccCCCeEE
Q 028130 62 TNADLEKFFGGEGKVTE 78 (213)
Q Consensus 62 t~~~L~~~F~~~G~i~~ 78 (213)
|--|+++++.+||.|..
T Consensus 4 tlYDVqQLLK~fG~~IY 20 (72)
T 2nn4_A 4 TFYDVQQLLKTFGHIVY 20 (72)
T ss_dssp SHHHHHHHHHTTTCCCC
T ss_pred cHHHHHHHHHHCCEEEE
Confidence 56789999999998754
No 320
>1x8d_A Hypothetical protein YIIL; mutarotase, L-rhamnose, biosynthetic protein; HET: RNS; 1.80A {Escherichia coli} SCOP: d.58.4.21
Probab=20.11 E-value=1.8e+02 Score=19.48 Aligned_cols=34 Identities=24% Similarity=0.374 Sum_probs=20.9
Q ss_pred HHHHHHHccCCCeEEEEEeeCCCCCCcccEEEEEeec
Q 028130 64 ADLEKFFGGEGKVTECHLVTDPRTRESCGFAFVTMET 100 (213)
Q Consensus 64 ~~L~~~F~~~G~i~~~~i~~~~~t~~~~g~afV~f~~ 100 (213)
.+|.+.+...| |.+..|..+..++ .-|+++++.+
T Consensus 27 PEv~~~L~~aG-i~~ysIfl~~~~~--~LF~~~E~~d 60 (104)
T 1x8d_A 27 PELEAVLKSHG-AHNYAIYLDKARN--LLFAMVEIES 60 (104)
T ss_dssp HHHHHHHHHTT-EEEEEEEEETTTT--EEEEEEEESC
T ss_pred HHHHHHHHHcC-CeEEEEEEECCCC--eEEEEEEEcC
Confidence 45667777777 4555555553222 2378888877
No 321
>2cs4_A Protein C12ORF2; GTP binding, ubiquitin fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=20.02 E-value=42 Score=22.52 Aligned_cols=22 Identities=18% Similarity=0.267 Sum_probs=14.2
Q ss_pred EeCCCCCCcHHHHHHHH-ccCCC
Q 028130 54 VTGLSTRVTNADLEKFF-GGEGK 75 (213)
Q Consensus 54 V~nLp~~~t~~~L~~~F-~~~G~ 75 (213)
|.+|...||=+||...| ...|+
T Consensus 21 VsGvT~~TTC~DVV~aL~~~~G~ 43 (95)
T 2cs4_A 21 VCGVTEVTTCQEVVIALAQAIGR 43 (95)
T ss_dssp CSSBCSSSCHHHHHHHHHHHHSC
T ss_pred EECCCCCCcHHHHHHHHHhccCC
Confidence 34678888877776654 44454
Done!