Query 028131
Match_columns 213
No_of_seqs 110 out of 1840
Neff 9.4
Searched_HMMs 46136
Date Fri Mar 29 06:44:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028131.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028131hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5126 FRQ1 Ca2+-binding prot 99.9 3.3E-26 7.2E-31 166.9 17.3 151 21-182 8-159 (160)
2 KOG0034 Ca2+/calmodulin-depend 99.9 7E-26 1.5E-30 170.6 19.0 179 1-190 1-186 (187)
3 KOG0044 Ca2+ sensor (EF-Hand s 99.9 4.1E-24 8.8E-29 161.1 16.5 179 1-189 1-185 (193)
4 KOG0027 Calmodulin and related 99.9 9.5E-22 2.1E-26 145.3 16.6 143 27-179 2-149 (151)
5 PTZ00183 centrin; Provisional 99.9 9.5E-20 2.1E-24 135.2 18.0 149 24-182 8-157 (158)
6 KOG0028 Ca2+-binding protein ( 99.8 4.3E-19 9.3E-24 127.2 15.9 148 23-180 23-171 (172)
7 PTZ00184 calmodulin; Provision 99.8 7.9E-19 1.7E-23 128.8 17.8 144 26-179 4-148 (149)
8 KOG0038 Ca2+-binding kinase in 99.8 1.8E-19 4E-24 127.1 13.6 178 1-189 1-187 (189)
9 KOG0031 Myosin regulatory ligh 99.8 2.3E-17 5E-22 117.5 14.6 142 23-178 22-164 (171)
10 KOG0030 Myosin essential light 99.7 2.1E-16 4.7E-21 110.8 12.6 143 26-179 4-151 (152)
11 KOG0037 Ca2+-binding protein, 99.7 1.1E-15 2.4E-20 115.3 14.0 139 32-187 56-196 (221)
12 KOG0036 Predicted mitochondria 99.6 1.2E-13 2.6E-18 113.0 14.9 143 23-181 4-148 (463)
13 PF13499 EF-hand_7: EF-hand do 99.4 4.2E-13 9.2E-18 85.0 7.3 66 108-177 1-66 (66)
14 PLN02964 phosphatidylserine de 99.4 4E-12 8.8E-17 111.9 14.2 134 14-154 122-272 (644)
15 KOG0027 Calmodulin and related 99.3 9.5E-11 2.1E-15 86.5 11.7 105 70-179 8-113 (151)
16 cd05022 S-100A13 S-100A13: S-1 99.2 3.1E-11 6.8E-16 80.6 7.4 66 107-180 8-76 (89)
17 KOG4223 Reticulocalbin, calume 99.2 5.2E-10 1.1E-14 89.5 11.9 142 32-182 76-231 (325)
18 cd05027 S-100B S-100B: S-100B 99.2 2.2E-10 4.8E-15 76.5 8.3 65 107-179 8-79 (88)
19 KOG4223 Reticulocalbin, calume 99.1 4.4E-10 9.5E-15 89.9 10.2 137 29-175 159-301 (325)
20 KOG0037 Ca2+-binding protein, 99.1 2.9E-09 6.3E-14 80.8 13.9 130 24-178 88-219 (221)
21 PTZ00184 calmodulin; Provision 99.1 1.3E-09 2.7E-14 79.6 11.8 100 72-179 13-112 (149)
22 PTZ00183 centrin; Provisional 99.1 2.9E-09 6.3E-14 78.6 13.0 101 71-179 18-118 (158)
23 KOG0377 Protein serine/threoni 99.1 1.7E-09 3.7E-14 89.6 11.9 140 34-179 465-615 (631)
24 COG5126 FRQ1 Ca2+-binding prot 99.1 5.2E-09 1.1E-13 76.9 12.4 99 72-179 22-120 (160)
25 KOG0044 Ca2+ sensor (EF-Hand s 99.0 2.1E-09 4.5E-14 81.5 10.1 112 66-185 22-134 (193)
26 cd05031 S-100A10_like S-100A10 99.0 1.8E-09 4E-14 73.1 7.9 71 106-180 7-80 (94)
27 cd05026 S-100Z S-100Z: S-100Z 99.0 3.7E-09 8E-14 71.5 8.5 70 107-180 10-82 (93)
28 cd05029 S-100A6 S-100A6: S-100 99.0 3E-09 6.6E-14 71.0 7.8 68 107-179 10-79 (88)
29 KOG0040 Ca2+-binding actin-bun 99.0 2.3E-08 5E-13 92.9 15.3 143 22-178 2242-2397(2399)
30 cd05025 S-100A1 S-100A1: S-100 99.0 4.5E-09 9.7E-14 70.9 8.2 72 106-181 8-82 (92)
31 KOG2562 Protein phosphatase 2 98.9 1.5E-08 3.3E-13 84.6 11.0 142 26-175 271-420 (493)
32 cd00052 EH Eps15 homology doma 98.9 7.1E-09 1.5E-13 65.4 6.9 62 110-181 2-63 (67)
33 cd00213 S-100 S-100: S-100 dom 98.9 1.5E-08 3.3E-13 67.7 7.6 70 107-180 8-80 (88)
34 cd00252 SPARC_EC SPARC_EC; ext 98.9 1.5E-08 3.4E-13 70.9 7.8 62 105-178 46-107 (116)
35 smart00027 EH Eps15 homology d 98.8 2.2E-08 4.7E-13 68.1 8.2 70 106-185 9-78 (96)
36 smart00027 EH Eps15 homology d 98.8 3.1E-08 6.8E-13 67.3 8.8 71 25-98 2-72 (96)
37 PF13499 EF-hand_7: EF-hand do 98.8 1.6E-08 3.5E-13 63.7 6.3 59 35-95 2-65 (66)
38 PF13833 EF-hand_8: EF-hand do 98.8 1.7E-08 3.8E-13 61.0 5.9 52 120-179 1-53 (54)
39 KOG0028 Ca2+-binding protein ( 98.8 1.3E-07 2.9E-12 68.4 11.2 101 71-179 34-134 (172)
40 cd05023 S-100A11 S-100A11: S-1 98.8 5.2E-08 1.1E-12 65.2 8.4 70 107-180 9-81 (89)
41 cd00051 EFh EF-hand, calcium b 98.8 3.4E-08 7.4E-13 60.5 7.1 61 109-177 2-62 (63)
42 PLN02964 phosphatidylserine de 98.8 1E-07 2.2E-12 84.5 12.6 99 70-180 143-244 (644)
43 cd05022 S-100A13 S-100A13: S-1 98.8 6.5E-08 1.4E-12 64.6 8.0 70 29-100 4-77 (89)
44 KOG0034 Ca2+/calmodulin-depend 98.7 1E-07 2.2E-12 72.3 9.7 97 37-135 70-175 (187)
45 PF14658 EF-hand_9: EF-hand do 98.7 1.2E-07 2.6E-12 58.9 6.7 61 111-179 2-64 (66)
46 cd05026 S-100Z S-100Z: S-100Z 98.7 2.3E-07 4.9E-12 62.7 8.7 70 29-100 6-83 (93)
47 cd05027 S-100B S-100B: S-100B 98.7 2.1E-07 4.6E-12 62.1 8.1 69 29-99 4-80 (88)
48 KOG0036 Predicted mitochondria 98.6 1.7E-06 3.6E-11 71.7 12.8 134 31-180 49-184 (463)
49 cd00213 S-100 S-100: S-100 dom 98.6 5.8E-07 1.3E-11 60.0 8.1 68 29-98 4-79 (88)
50 cd05030 calgranulins Calgranul 98.5 4.1E-07 8.9E-12 60.8 7.2 67 107-180 8-80 (88)
51 cd05025 S-100A1 S-100A1: S-100 98.5 7.1E-07 1.5E-11 60.1 7.8 69 30-100 6-82 (92)
52 KOG2643 Ca2+ binding protein, 98.5 8.5E-07 1.8E-11 73.8 9.6 128 37-179 322-453 (489)
53 cd05029 S-100A6 S-100A6: S-100 98.5 1.3E-06 2.9E-11 58.3 8.6 69 29-99 6-80 (88)
54 cd00052 EH Eps15 homology doma 98.5 8.4E-07 1.8E-11 55.7 7.3 58 37-97 3-60 (67)
55 KOG0751 Mitochondrial aspartat 98.5 4.6E-06 9.9E-11 70.6 13.4 149 27-180 30-208 (694)
56 KOG4666 Predicted phosphate ac 98.5 4.7E-07 1E-11 72.7 6.8 126 48-185 240-365 (412)
57 PF00036 EF-hand_1: EF hand; 98.5 2.1E-07 4.6E-12 48.6 3.2 28 108-135 1-28 (29)
58 cd05031 S-100A10_like S-100A10 98.5 1.4E-06 3.1E-11 58.9 8.3 66 30-97 5-78 (94)
59 KOG0031 Myosin regulatory ligh 98.4 2.1E-06 4.7E-11 61.8 8.5 69 107-179 32-129 (171)
60 cd05023 S-100A11 S-100A11: S-1 98.4 2.4E-06 5.1E-11 57.1 8.1 69 29-99 5-81 (89)
61 cd00051 EFh EF-hand, calcium b 98.4 2.3E-06 5E-11 52.1 7.4 60 73-133 3-62 (63)
62 cd00252 SPARC_EC SPARC_EC; ext 98.4 3.4E-06 7.3E-11 59.1 8.1 63 29-96 44-106 (116)
63 KOG0041 Predicted Ca2+-binding 98.4 4.6E-06 9.9E-11 62.7 9.2 117 15-133 81-201 (244)
64 PF13833 EF-hand_8: EF-hand do 98.3 2.3E-06 5E-11 51.5 6.1 50 84-134 2-52 (54)
65 KOG4251 Calcium binding protei 98.3 3.4E-06 7.4E-11 65.4 7.8 139 33-180 101-265 (362)
66 KOG2643 Ca2+ binding protein, 98.3 4.5E-06 9.8E-11 69.6 8.9 121 48-181 212-348 (489)
67 KOG0038 Ca2+-binding kinase in 98.2 5.7E-06 1.2E-10 59.2 7.3 97 34-135 75-177 (189)
68 KOG0041 Predicted Ca2+-binding 98.2 6.3E-06 1.4E-10 62.0 7.0 66 106-179 98-163 (244)
69 KOG0030 Myosin essential light 98.2 3.3E-05 7.1E-10 54.9 9.5 105 69-179 10-116 (152)
70 PF13405 EF-hand_6: EF-hand do 98.1 3.1E-06 6.6E-11 44.9 3.2 29 108-136 1-30 (31)
71 cd05030 calgranulins Calgranul 98.1 2.1E-05 4.6E-10 52.4 7.7 70 29-98 4-79 (88)
72 cd05024 S-100A10 S-100A10: A s 98.1 3.8E-05 8.2E-10 51.1 8.6 69 29-100 4-78 (91)
73 PRK12309 transaldolase/EF-hand 98.1 3.7E-05 8.1E-10 64.9 10.5 57 102-179 329-385 (391)
74 cd05024 S-100A10 S-100A10: A s 98.0 7.2E-05 1.6E-09 49.8 8.6 69 107-180 8-77 (91)
75 PF00036 EF-hand_1: EF hand; 98.0 6.8E-06 1.5E-10 42.8 2.9 26 154-179 3-28 (29)
76 KOG4251 Calcium binding protei 98.0 3.7E-05 8.1E-10 59.8 7.7 139 38-178 145-308 (362)
77 PF13202 EF-hand_5: EF hand; P 97.9 1.3E-05 2.8E-10 40.3 2.9 25 109-133 1-25 (25)
78 PF14658 EF-hand_9: EF-hand do 97.9 7.5E-05 1.6E-09 46.5 6.5 60 75-134 3-63 (66)
79 PF12763 EF-hand_4: Cytoskelet 97.8 4.7E-05 1E-09 52.3 5.7 68 27-98 4-71 (104)
80 PF12763 EF-hand_4: Cytoskelet 97.8 0.00018 4E-09 49.4 7.3 68 104-182 7-74 (104)
81 KOG1029 Endocytic adaptor prot 97.7 0.00095 2.1E-08 59.7 12.1 168 24-205 7-283 (1118)
82 KOG4065 Uncharacterized conser 97.6 0.00024 5.2E-09 48.8 6.5 71 106-176 66-142 (144)
83 KOG0169 Phosphoinositide-speci 97.6 0.0027 5.9E-08 56.9 14.1 166 27-201 130-297 (746)
84 PF13202 EF-hand_5: EF hand; P 97.6 7.4E-05 1.6E-09 37.4 2.7 24 154-177 2-25 (25)
85 KOG0751 Mitochondrial aspartat 97.6 0.0011 2.3E-08 56.7 10.6 101 48-153 87-221 (694)
86 KOG0377 Protein serine/threoni 97.5 0.0005 1.1E-08 57.9 7.9 89 48-136 512-616 (631)
87 PRK12309 transaldolase/EF-hand 97.5 0.00042 9.1E-09 58.6 7.3 55 68-136 332-386 (391)
88 PF10591 SPARC_Ca_bdg: Secrete 97.5 5.6E-05 1.2E-09 52.8 1.7 64 103-176 50-113 (113)
89 PF14788 EF-hand_10: EF hand; 97.3 0.0011 2.4E-08 38.9 5.6 49 87-136 2-50 (51)
90 KOG0046 Ca2+-binding actin-bun 97.3 0.0011 2.4E-08 56.9 7.3 75 23-100 9-87 (627)
91 PF13405 EF-hand_6: EF-hand do 97.2 0.00046 1E-08 36.3 3.1 27 34-62 1-27 (31)
92 PF14788 EF-hand_10: EF hand; 97.1 0.0018 3.9E-08 38.1 5.1 48 124-179 2-49 (51)
93 KOG0040 Ca2+-binding actin-bun 97.1 0.0013 2.8E-08 62.7 6.7 65 108-180 2254-2325(2399)
94 PF09069 EF-hand_3: EF-hand; 97.1 0.0034 7.3E-08 41.8 7.0 79 106-187 2-83 (90)
95 PF10591 SPARC_Ca_bdg: Secrete 97.0 0.00087 1.9E-08 46.8 3.5 54 73-129 57-110 (113)
96 PF09279 EF-hand_like: Phospho 96.9 0.0055 1.2E-07 40.1 6.4 70 108-180 1-70 (83)
97 smart00054 EFh EF-hand, calciu 96.8 0.0013 2.9E-08 32.8 2.7 27 109-135 2-28 (29)
98 KOG4347 GTPase-activating prot 96.7 0.005 1.1E-07 54.3 6.9 112 16-129 487-612 (671)
99 KOG2562 Protein phosphatase 2 96.7 0.025 5.4E-07 48.2 10.3 130 37-179 178-343 (493)
100 KOG0046 Ca2+-binding actin-bun 96.7 0.0075 1.6E-07 52.0 7.2 65 108-178 20-84 (627)
101 PLN02952 phosphoinositide phos 96.2 0.057 1.2E-06 48.2 10.3 115 83-201 13-131 (599)
102 smart00054 EFh EF-hand, calciu 96.0 0.012 2.6E-07 29.1 3.4 26 154-179 3-28 (29)
103 KOG4666 Predicted phosphate ac 95.6 0.041 8.9E-07 44.9 6.2 99 33-135 259-359 (412)
104 KOG4065 Uncharacterized conser 95.0 0.14 2.9E-06 35.5 6.3 34 24-61 60-93 (144)
105 KOG1707 Predicted Ras related/ 94.9 0.31 6.7E-06 43.1 9.8 153 25-184 187-348 (625)
106 KOG4578 Uncharacterized conser 94.8 0.021 4.6E-07 46.5 2.5 68 108-182 334-401 (421)
107 KOG0035 Ca2+-binding actin-bun 94.7 0.23 5.1E-06 46.0 9.0 104 25-131 739-848 (890)
108 KOG1955 Ral-GTPase effector RA 94.6 0.11 2.4E-06 44.8 6.3 77 19-98 217-293 (737)
109 KOG3866 DNA-binding protein of 94.0 0.19 4.1E-06 40.9 6.2 92 88-179 225-324 (442)
110 KOG0039 Ferric reductase, NADH 93.9 0.16 3.4E-06 46.2 6.3 97 84-188 2-98 (646)
111 KOG3555 Ca2+-binding proteogly 93.8 0.082 1.8E-06 43.5 3.8 63 105-179 248-310 (434)
112 PF05042 Caleosin: Caleosin re 93.7 2 4.4E-05 32.1 10.7 132 37-177 11-164 (174)
113 KOG1265 Phospholipase C [Lipid 93.6 1.7 3.8E-05 40.4 12.0 148 48-201 161-322 (1189)
114 KOG0169 Phosphoinositide-speci 93.3 0.77 1.7E-05 41.8 9.4 68 68-136 134-201 (746)
115 PF09279 EF-hand_like: Phospho 93.3 0.24 5.2E-06 32.2 4.9 62 72-134 2-68 (83)
116 KOG1029 Endocytic adaptor prot 91.8 0.37 8E-06 43.9 5.4 70 25-97 187-256 (1118)
117 PF09068 EF-hand_2: EF hand; 91.6 1.3 2.8E-05 31.5 7.2 99 18-135 26-125 (127)
118 PF05042 Caleosin: Caleosin re 91.4 0.8 1.7E-05 34.2 6.0 35 154-188 99-133 (174)
119 KOG1955 Ral-GTPase effector RA 91.3 0.64 1.4E-05 40.3 6.1 63 107-179 231-293 (737)
120 KOG0998 Synaptic vesicle prote 91.3 0.22 4.8E-06 46.6 3.7 144 24-181 120-347 (847)
121 KOG0042 Glycerol-3-phosphate d 91.0 0.53 1.1E-05 41.6 5.4 77 23-101 583-660 (680)
122 KOG4347 GTPase-activating prot 89.6 1 2.2E-05 40.3 6.1 78 87-173 535-612 (671)
123 KOG0035 Ca2+-binding actin-bun 88.6 1.1 2.3E-05 41.9 5.6 71 107-181 747-818 (890)
124 KOG4578 Uncharacterized conser 87.8 0.43 9.3E-06 39.2 2.4 62 74-135 337-398 (421)
125 PF08726 EFhand_Ca_insen: Ca2+ 86.9 0.65 1.4E-05 29.3 2.4 60 104-175 3-65 (69)
126 KOG2243 Ca2+ release channel ( 86.8 1.4 3E-05 43.1 5.3 59 111-178 4061-4119(5019)
127 PF05517 p25-alpha: p25-alpha 85.2 4.6 0.0001 29.7 6.6 53 48-100 15-71 (154)
128 PLN02230 phosphoinositide phos 84.9 4.4 9.6E-05 36.5 7.4 73 104-179 26-102 (598)
129 KOG4286 Dystrophin-like protei 84.9 12 0.00025 34.6 9.8 159 18-187 405-588 (966)
130 PF09068 EF-hand_2: EF hand; 84.8 2.8 6.1E-05 29.8 5.1 72 107-178 41-124 (127)
131 KOG3555 Ca2+-binding proteogly 84.3 2 4.4E-05 35.6 4.6 97 33-136 211-311 (434)
132 KOG0042 Glycerol-3-phosphate d 83.9 2.5 5.3E-05 37.6 5.2 65 107-179 593-657 (680)
133 PF08414 NADPH_Ox: Respiratory 82.5 6.7 0.00014 26.5 5.8 61 31-97 28-91 (100)
134 PLN02228 Phosphoinositide phos 81.7 6.1 0.00013 35.4 7.0 69 104-180 21-93 (567)
135 PF04876 Tenui_NCP: Tenuivirus 79.9 12 0.00025 27.3 6.6 48 141-191 125-172 (175)
136 KOG1707 Predicted Ras related/ 76.6 5.8 0.00013 35.4 5.2 93 24-120 306-399 (625)
137 KOG2557 Uncharacterized conser 75.2 23 0.0005 29.9 8.0 54 85-139 73-126 (427)
138 PLN02223 phosphoinositide phos 74.5 23 0.00051 31.6 8.3 75 104-179 13-92 (537)
139 KOG4301 Beta-dystrobrevin [Cyt 74.2 45 0.00097 27.9 9.3 103 72-181 112-217 (434)
140 PLN02952 phosphoinositide phos 72.1 43 0.00094 30.4 9.6 86 48-134 13-109 (599)
141 KOG4403 Cell surface glycoprot 72.1 6.1 0.00013 33.9 4.0 58 82-139 40-100 (575)
142 PF08414 NADPH_Ox: Respiratory 71.5 24 0.00052 23.9 6.0 50 121-178 42-91 (100)
143 PLN02508 magnesium-protoporphy 70.7 16 0.00034 30.4 5.9 85 104-196 38-125 (357)
144 PF14513 DAG_kinase_N: Diacylg 70.3 3.6 7.8E-05 29.7 2.1 25 16-40 11-35 (138)
145 TIGR01848 PHA_reg_PhaR polyhyd 69.6 13 0.00029 25.4 4.6 65 114-182 10-80 (107)
146 cd07313 terB_like_2 tellurium 69.3 16 0.00034 24.5 5.1 10 49-58 13-22 (104)
147 PF14513 DAG_kinase_N: Diacylg 68.9 13 0.00029 26.8 4.7 71 49-120 5-82 (138)
148 PLN02222 phosphoinositide phos 68.4 27 0.00058 31.6 7.4 68 105-179 23-90 (581)
149 KOG2243 Ca2+ release channel ( 64.8 14 0.0003 36.8 5.1 57 39-97 4063-4119(5019)
150 KOG4004 Matricellular protein 64.1 4.2 9E-05 31.2 1.4 56 113-178 193-249 (259)
151 cd07313 terB_like_2 tellurium 64.1 39 0.00085 22.5 6.2 83 24-130 13-95 (104)
152 PF05920 Homeobox_KN: Homeobox 63.2 3.1 6.8E-05 23.1 0.5 30 8-37 6-35 (40)
153 PF08976 DUF1880: Domain of un 62.3 7.6 0.00016 27.0 2.3 33 143-179 3-35 (118)
154 cd03035 ArsC_Yffb Arsenate Red 61.6 15 0.00033 25.0 3.8 56 122-185 34-89 (105)
155 cd02977 ArsC_family Arsenate R 61.0 22 0.00048 23.9 4.6 55 122-185 34-91 (105)
156 PF11829 DUF3349: Protein of u 60.8 33 0.00072 23.1 5.1 65 86-154 19-83 (96)
157 PF00404 Dockerin_1: Dockerin 57.6 20 0.00043 16.9 2.6 16 117-132 1-16 (21)
158 PRK13654 magnesium-protoporphy 57.0 24 0.00053 29.4 4.7 85 104-196 42-129 (355)
159 cd08327 CARD_RAIDD Caspase act 55.5 37 0.00081 22.7 4.7 55 120-187 32-86 (94)
160 cd03034 ArsC_ArsC Arsenate Red 55.4 34 0.00074 23.5 4.8 54 122-185 34-90 (112)
161 KOG3449 60S acidic ribosomal p 54.3 49 0.0011 22.8 5.1 55 109-176 3-57 (112)
162 KOG2871 Uncharacterized conser 53.9 12 0.00025 31.7 2.5 33 104-136 306-338 (449)
163 KOG3866 DNA-binding protein of 53.6 11 0.00023 31.1 2.2 88 39-135 250-354 (442)
164 PF01023 S_100: S-100/ICaBP ty 53.5 40 0.00086 19.0 4.3 32 30-61 3-34 (44)
165 KOG4004 Matricellular protein 53.1 6.8 0.00015 30.1 1.0 47 84-133 202-248 (259)
166 PRK10026 arsenate reductase; P 52.5 32 0.00069 25.0 4.3 57 122-185 37-93 (141)
167 KOG0998 Synaptic vesicle prote 51.8 11 0.00023 35.8 2.2 71 26-99 276-346 (847)
168 cd03032 ArsC_Spx Arsenate Redu 51.3 48 0.001 22.8 5.0 57 122-185 35-91 (115)
169 cd01047 ACSF Aerobic Cyclase S 50.6 24 0.00053 28.9 3.7 84 105-196 23-109 (323)
170 CHL00185 ycf59 magnesium-proto 50.1 38 0.00082 28.2 4.8 85 104-196 38-125 (351)
171 PF05517 p25-alpha: p25-alpha 48.9 1E+02 0.0023 22.5 9.6 63 80-142 12-76 (154)
172 PTZ00373 60S Acidic ribosomal 48.0 64 0.0014 22.4 5.1 41 109-153 5-45 (112)
173 PF05099 TerB: Tellurite resis 47.0 67 0.0015 22.6 5.4 22 141-162 88-109 (140)
174 PF02864 STAT_bind: STAT prote 46.9 38 0.00083 27.2 4.3 54 123-176 178-232 (254)
175 cd00086 homeodomain Homeodomai 45.5 16 0.00034 21.4 1.6 29 10-38 22-50 (59)
176 PF12174 RST: RCD1-SRO-TAF4 (R 45.2 39 0.00084 21.3 3.3 49 84-136 6-54 (70)
177 TIGR00014 arsC arsenate reduct 44.9 59 0.0013 22.4 4.6 58 122-185 34-91 (114)
178 PF07879 PHB_acc_N: PHB/PHA ac 43.8 19 0.00041 22.2 1.7 22 114-135 10-31 (64)
179 cd05833 Ribosomal_P2 Ribosomal 43.6 81 0.0018 21.7 5.0 57 109-178 3-59 (109)
180 PRK12559 transcriptional regul 42.4 63 0.0014 22.9 4.6 57 122-185 35-91 (131)
181 COG3793 TerB Tellurite resista 39.9 86 0.0019 22.8 4.8 66 120-185 37-104 (144)
182 PRK13344 spxA transcriptional 39.9 64 0.0014 23.0 4.3 57 122-185 35-91 (132)
183 PF07105 DUF1367: Protein of u 39.5 1.4E+02 0.0031 22.9 6.2 81 107-188 52-136 (196)
184 PF03979 Sigma70_r1_1: Sigma-7 39.0 43 0.00093 21.6 3.0 29 120-154 18-46 (82)
185 PF11569 Homez: Homeodomain le 38.8 35 0.00077 20.5 2.3 23 15-37 25-47 (56)
186 cd07316 terB_like_DjlA N-termi 38.7 1.2E+02 0.0025 20.1 7.3 10 49-58 13-22 (106)
187 PF05099 TerB: Tellurite resis 37.0 54 0.0012 23.1 3.6 79 48-128 36-117 (140)
188 PF12486 DUF3702: ImpA domain 36.8 78 0.0017 23.2 4.3 39 109-147 71-109 (148)
189 PRK01655 spxA transcriptional 36.3 1.1E+02 0.0024 21.6 5.1 57 122-185 35-91 (131)
190 PF09336 Vps4_C: Vps4 C termin 36.2 50 0.0011 20.1 2.8 27 123-153 29-55 (62)
191 PF00427 PBS_linker_poly: Phyc 35.9 1.1E+02 0.0024 21.8 4.9 58 124-187 5-64 (131)
192 smart00389 HOX Homeodomain. DN 35.8 27 0.00058 20.2 1.5 28 10-37 22-49 (56)
193 TIGR02029 AcsF magnesium-proto 34.2 80 0.0017 26.2 4.3 85 104-196 32-119 (337)
194 KOG0506 Glutaminase (contains 33.8 1.7E+02 0.0036 26.0 6.4 73 109-185 88-164 (622)
195 PF03960 ArsC: ArsC family; I 33.6 24 0.00051 24.1 1.2 57 123-185 32-88 (110)
196 PLN02228 Phosphoinositide phos 33.4 2.3E+02 0.0049 25.8 7.4 12 50-61 37-48 (567)
197 PF09682 Holin_LLH: Phage holi 32.9 1.6E+02 0.0035 20.1 5.9 52 109-160 53-104 (108)
198 TIGR01639 P_fal_TIGR01639 Plas 32.8 1.2E+02 0.0025 18.4 4.4 32 122-157 8-39 (61)
199 PF03672 UPF0154: Uncharacteri 32.1 1.3E+02 0.0028 18.7 4.2 30 121-154 29-58 (64)
200 COG3956 Protein containing tet 31.8 3.2E+02 0.007 23.2 7.6 35 162-196 302-341 (488)
201 cd08330 CARD_ASC_NALP1 Caspase 31.6 1.5E+02 0.0032 19.2 5.0 53 120-185 26-79 (82)
202 PF02337 Gag_p10: Retroviral G 31.5 1.6E+02 0.0034 19.6 5.3 53 127-179 8-61 (90)
203 cd03033 ArsC_15kD Arsenate Red 31.3 1.1E+02 0.0024 21.1 4.2 20 166-185 70-89 (113)
204 PF13720 Acetyltransf_11: Udp 31.2 1.5E+02 0.0032 19.2 5.1 52 23-80 24-75 (83)
205 KOG1264 Phospholipase C [Lipid 30.6 4.7E+02 0.01 25.2 8.9 150 26-182 136-296 (1267)
206 KOG0493 Transcription factor E 30.3 1.2E+02 0.0027 24.4 4.7 48 22-77 248-295 (342)
207 cd03036 ArsC_like Arsenate Red 30.0 1.3E+02 0.0029 20.4 4.5 58 122-185 34-92 (111)
208 TIGR01616 nitro_assoc nitrogen 29.5 1.3E+02 0.0029 21.1 4.5 20 166-185 71-90 (126)
209 PRK00523 hypothetical protein; 29.3 1.5E+02 0.0033 18.8 4.1 31 121-155 37-67 (72)
210 PLN00138 large subunit ribosom 29.1 1.9E+02 0.0042 20.1 5.0 39 111-153 5-43 (113)
211 KOG3442 Uncharacterized conser 27.9 1.3E+02 0.0028 21.3 4.0 43 120-167 52-94 (132)
212 PF03556 Cullin_binding: Culli 27.9 2.1E+02 0.0046 19.9 5.5 61 75-136 29-89 (117)
213 PF09373 PMBR: Pseudomurein-bi 27.2 67 0.0015 16.7 2.0 21 165-185 2-22 (33)
214 PF02761 Cbl_N2: CBL proto-onc 26.5 1.9E+02 0.0042 19.0 5.2 48 86-134 22-69 (85)
215 PF11848 DUF3368: Domain of un 26.3 1.3E+02 0.0029 17.0 3.6 31 120-153 14-44 (48)
216 PRK14981 DNA-directed RNA poly 26.0 1.8E+02 0.0038 20.1 4.5 25 126-154 81-105 (112)
217 COG3763 Uncharacterized protei 26.0 1.8E+02 0.0039 18.4 4.0 31 121-155 36-66 (71)
218 cd04411 Ribosomal_P1_P2_L12p R 24.0 2.4E+02 0.0053 19.2 5.4 43 124-179 17-59 (105)
219 PF11116 DUF2624: Protein of u 23.9 2.2E+02 0.0048 18.7 7.2 69 86-160 14-82 (85)
220 KOG1954 Endocytosis/signaling 23.7 1.5E+02 0.0033 25.6 4.3 22 72-93 479-500 (532)
221 cd08332 CARD_CASP2 Caspase act 23.7 2.2E+02 0.0048 18.7 4.7 54 120-186 31-86 (90)
222 PLN02230 phosphoinositide phos 23.2 2.9E+02 0.0064 25.3 6.4 12 122-133 89-100 (598)
223 PF00046 Homeobox: Homeobox do 22.5 34 0.00073 19.9 0.3 28 10-37 22-49 (57)
224 PLN02222 phosphoinositide phos 22.4 3E+02 0.0065 25.1 6.3 67 24-97 19-89 (581)
225 PRK12461 UDP-N-acetylglucosami 21.9 3.9E+02 0.0085 21.3 6.4 52 23-80 196-247 (255)
226 PRK01844 hypothetical protein; 21.7 2.3E+02 0.0049 18.0 4.1 31 121-155 36-66 (72)
227 COG4103 Uncharacterized protei 21.5 3.3E+02 0.0072 19.9 5.7 92 37-134 34-128 (148)
228 PF05872 DUF853: Bacterial pro 21.1 76 0.0016 28.0 2.2 51 87-137 106-158 (502)
229 PRK00819 RNA 2'-phosphotransfe 20.9 1.9E+02 0.004 21.9 4.1 33 117-153 27-59 (179)
No 1
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.95 E-value=3.3e-26 Score=166.95 Aligned_cols=151 Identities=29% Similarity=0.497 Sum_probs=141.1
Q ss_pred hhhcCCCCHHHHHHHHHHHHHhhcCCCCCCCcCHHHHHHHHhccc-CcchHHHHHHHHHhcCCCCCcccHHHHHHHHhhh
Q 028131 21 LAAETPFTVCEVEALYELFKKLSSSIFDDGIIHKEEFQLALFRNK-NKKNLFADRIFDLFDLKRNGVIEFGEFVRSLGVF 99 (213)
Q Consensus 21 l~~~~~ls~~~i~~l~~~F~~~d~~~~~~G~l~~~e~~~~l~~~~-~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~ 99 (213)
+...++|+++++++|+++|..+|.+ ++|.|++.+|..+++.++ ..++..+.+++..++. +++.|+|.+|+.+++..
T Consensus 8 ~~~~~~~t~~qi~~lkeaF~l~D~d--~~G~I~~~el~~ilr~lg~~~s~~ei~~l~~~~d~-~~~~idf~~Fl~~ms~~ 84 (160)
T COG5126 8 LLTFTQLTEEQIQELKEAFQLFDRD--SDGLIDRNELGKILRSLGFNPSEAEINKLFEEIDA-GNETVDFPEFLTVMSVK 84 (160)
T ss_pred hhhcccCCHHHHHHHHHHHHHhCcC--CCCCCcHHHHHHHHHHcCCCCcHHHHHHHHHhccC-CCCccCHHHHHHHHHHH
Confidence 7778899999999999999999999 999999999999997776 4578889999999999 88999999999999988
Q ss_pred CCCCChHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhCCCCCCCcCHHHHHHHHHh
Q 028131 100 HPHALVEDKIAFAFRLYDLRQTGFIEREELKEMVLALLHESDLILSDDVIETIVDKSFSDADTNGDGKIDPEEWKEFVKK 179 (213)
Q Consensus 100 ~~~~~~~~~~~~~F~~~D~d~~G~I~~~El~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~d~dg~Is~~ef~~~l~~ 179 (213)
.+....++++.++|+.||.|++|+|+..||+.++..+ |..+++++++.++ ..+|.|++|.|+|++|.+.+..
T Consensus 85 ~~~~~~~Eel~~aF~~fD~d~dG~Is~~eL~~vl~~l----ge~~~deev~~ll----~~~d~d~dG~i~~~eF~~~~~~ 156 (160)
T COG5126 85 LKRGDKEEELREAFKLFDKDHDGYISIGELRRVLKSL----GERLSDEEVEKLL----KEYDEDGDGEIDYEEFKKLIKD 156 (160)
T ss_pred hccCCcHHHHHHHHHHhCCCCCceecHHHHHHHHHhh----cccCCHHHHHHHH----HhcCCCCCceEeHHHHHHHHhc
Confidence 8778889999999999999999999999999999988 9999999999998 7999999999999999999987
Q ss_pred Chh
Q 028131 180 NPS 182 (213)
Q Consensus 180 ~~~ 182 (213)
.|.
T Consensus 157 ~~~ 159 (160)
T COG5126 157 SPT 159 (160)
T ss_pred cCC
Confidence 663
No 2
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=99.95 E-value=7e-26 Score=170.63 Aligned_cols=179 Identities=45% Similarity=0.673 Sum_probs=160.1
Q ss_pred CCccccccccCCCCCCchHhhhhcCC----CCHHHHHHHHHHHHHhhcCCCCCCCcCHHHHHHHHhcccCcchHHHHHHH
Q 028131 1 MGCVLTKKTKQTPGYEEPTVLAAETP----FTVCEVEALYELFKKLSSSIFDDGIIHKEEFQLALFRNKNKKNLFADRIF 76 (213)
Q Consensus 1 mg~~~s~~~~~~~~~~~~~~l~~~~~----ls~~~i~~l~~~F~~~d~~~~~~G~l~~~e~~~~l~~~~~~~~~~~~~~~ 76 (213)
||+..|+... +++.+.+...+. ||..||.+|+.+|.++|.+. ++|+++.++|..+. ....++...+++
T Consensus 1 Mg~~~s~~~~----~~~~~~~~~~~~~~~~fs~~EI~~L~~rF~kl~~~~-~~g~lt~eef~~i~---~~~~Np~~~rI~ 72 (187)
T KOG0034|consen 1 MGNLSSTLLS----DEDLEELQMYTGDPTQFSANEIERLYERFKKLDRNN-GDGYLTKEEFLSIP---ELALNPLADRII 72 (187)
T ss_pred CCcccccccc----hhhhHHHHhccCCCcccCHHHHHHHHHHHHHhcccc-ccCccCHHHHHHHH---HHhcCcHHHHHH
Confidence 8988887653 577888888888 99999999999999999863 67999999999776 345677789999
Q ss_pred HHhcCCCCCc-ccHHHHHHHHhhhCCCCChHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHhhhcCCCCC--HHHHHHHH
Q 028131 77 DLFDLKRNGV-IEFGEFVRSLGVFHPHALVEDKIAFAFRLYDLRQTGFIEREELKEMVLALLHESDLILS--DDVIETIV 153 (213)
Q Consensus 77 ~~~d~~~~~~-i~~~ef~~~~~~~~~~~~~~~~~~~~F~~~D~d~~G~I~~~El~~~l~~~~~~~~~~~~--~~~~~~~~ 153 (213)
..++.+++|. |+|.+|+.+++.+......+++++.+|++||.+++|+|+.+||..++..++ +...+ ++.++.++
T Consensus 73 ~~f~~~~~~~~v~F~~Fv~~ls~f~~~~~~~~Kl~faF~vYD~~~~G~I~reel~~iv~~~~---~~~~~~~~e~~~~i~ 149 (187)
T KOG0034|consen 73 DRFDTDGNGDPVDFEEFVRLLSVFSPKASKREKLRFAFRVYDLDGDGFISREELKQILRMMV---GENDDMSDEQLEDIV 149 (187)
T ss_pred HHHhccCCCCccCHHHHHHHHhhhcCCccHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHH---ccCCcchHHHHHHHH
Confidence 9999999888 999999999999997777778999999999999999999999999999886 44444 89999999
Q ss_pred HHHHHhhCCCCCCCcCHHHHHHHHHhChhhHhhcCch
Q 028131 154 DKSFSDADTNGDGKIDPEEWKEFVKKNPSLIKNMTLP 190 (213)
Q Consensus 154 ~~~f~~~d~d~dg~Is~~ef~~~l~~~~~~~~~~~~~ 190 (213)
+.+|..+|.|+||.|+++||.+.+.+.|.+.+++.++
T Consensus 150 d~t~~e~D~d~DG~IsfeEf~~~v~~~P~~~~~m~~~ 186 (187)
T KOG0034|consen 150 DKTFEEADTDGDGKISFEEFCKVVEKQPDLLEKMTIR 186 (187)
T ss_pred HHHHHHhCCCCCCcCcHHHHHHHHHcCccHHHHcCCC
Confidence 9999999999999999999999999999999998774
No 3
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.92 E-value=4.1e-24 Score=161.15 Aligned_cols=179 Identities=32% Similarity=0.493 Sum_probs=156.8
Q ss_pred CCcc-ccccccCCCCCCchHhhhhcCCCCHHHHHHHHHHHHHhhcCCCCCCCcCHHHHHHHHhccc--CcchHHHHHHHH
Q 028131 1 MGCV-LTKKTKQTPGYEEPTVLAAETPFTVCEVEALYELFKKLSSSIFDDGIIHKEEFQLALFRNK--NKKNLFADRIFD 77 (213)
Q Consensus 1 mg~~-~s~~~~~~~~~~~~~~l~~~~~ls~~~i~~l~~~F~~~d~~~~~~G~l~~~e~~~~l~~~~--~~~~~~~~~~~~ 77 (213)
||+. ++++.+ +.++++...+.+++++++.+++-|...+ ++|.++.++|+.++.... ..+......+|+
T Consensus 1 m~~~~~~~~~~-----~~~e~l~~~t~f~~~ei~~~Yr~Fk~~c----P~G~~~~~~F~~i~~~~fp~gd~~~y~~~vF~ 71 (193)
T KOG0044|consen 1 MGKKSNSKLQP-----ESLEQLVQQTKFSKKEIQQWYRGFKNEC----PSGRLTLEEFREIYASFFPDGDASKYAELVFR 71 (193)
T ss_pred CCccccccCCc-----HHHHHHHHhcCCCHHHHHHHHHHhcccC----CCCccCHHHHHHHHHHHCCCCCHHHHHHHHHH
Confidence 6766 666766 8899999999999999999999999987 899999999998875433 456777899999
Q ss_pred HhcCCCCCcccHHHHHHHHhhhCCCCChHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHhhhcCC---CCCHHHHHHHHH
Q 028131 78 LFDLKRNGVIEFGEFVRSLGVFHPHALVEDKIAFAFRLYDLRQTGFIEREELKEMVLALLHESDL---ILSDDVIETIVD 154 (213)
Q Consensus 78 ~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~F~~~D~d~~G~I~~~El~~~l~~~~~~~~~---~~~~~~~~~~~~ 154 (213)
.+|.+++|.|+|.||++.+..+. ++..+++++++|++||.||+|+|+.+|+..++.+++.-.+. +..++..+..+.
T Consensus 72 ~fD~~~dg~i~F~Efi~als~~~-rGt~eekl~w~F~lyD~dgdG~It~~Eml~iv~~i~~m~~~~~~~~~~~~~~~~v~ 150 (193)
T KOG0044|consen 72 TFDKNKDGTIDFLEFICALSLTS-RGTLEEKLKWAFRLYDLDGDGYITKEEMLKIVQAIYQMTGSKALPEDEETPEERVD 150 (193)
T ss_pred HhcccCCCCcCHHHHHHHHHHHc-CCcHHHHhhhhheeecCCCCceEcHHHHHHHHHHHHHHcccccCCcccccHHHHHH
Confidence 99999999999999999999888 79999999999999999999999999999999988755442 133445667788
Q ss_pred HHHHhhCCCCCCCcCHHHHHHHHHhChhhHhhcCc
Q 028131 155 KSFSDADTNGDGKIDPEEWKEFVKKNPSLIKNMTL 189 (213)
Q Consensus 155 ~~f~~~d~d~dg~Is~~ef~~~l~~~~~~~~~~~~ 189 (213)
.+|..+|.|+||.||++||...+.+.|.++..+..
T Consensus 151 ~if~k~D~n~Dg~lT~eef~~~~~~d~~i~~~l~~ 185 (193)
T KOG0044|consen 151 KIFSKMDKNKDGKLTLEEFIEGCKADPSILRALEQ 185 (193)
T ss_pred HHHHHcCCCCCCcccHHHHHHHhhhCHHHHHHhhh
Confidence 88999999999999999999999999999988754
No 4
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.89 E-value=9.5e-22 Score=145.29 Aligned_cols=143 Identities=25% Similarity=0.420 Sum_probs=129.1
Q ss_pred CCHHHHHHHHHHHHHhhcCCCCCCCcCHHHHHHHHhcccCc-chHHHHHHHHHhcCCCCCcccHHHHHHHHhhhCCCCCh
Q 028131 27 FTVCEVEALYELFKKLSSSIFDDGIIHKEEFQLALFRNKNK-KNLFADRIFDLFDLKRNGVIEFGEFVRSLGVFHPHALV 105 (213)
Q Consensus 27 ls~~~i~~l~~~F~~~d~~~~~~G~l~~~e~~~~l~~~~~~-~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~ 105 (213)
++..++.++..+|+.+|.+ ++|+|+..+|..++..++.. ....+..++..+|.+++|.|++.+|+.++.........
T Consensus 2 ~~~~~~~el~~~F~~fD~d--~~G~i~~~el~~~lr~lg~~~t~~el~~~~~~~D~dg~g~I~~~eF~~l~~~~~~~~~~ 79 (151)
T KOG0027|consen 2 LSEEQILELKEAFQLFDKD--GDGKISVEELGAVLRSLGQNPTEEELRDLIKEIDLDGDGTIDFEEFLDLMEKLGEEKTD 79 (151)
T ss_pred CCHHHHHHHHHHHHHHCCC--CCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHhhhccccc
Confidence 5778899999999999999 99999999999999888754 67778999999999999999999999999866543333
Q ss_pred ----HHHHHHHHHhcCCCCCCcccHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhCCCCCCCcCHHHHHHHHHh
Q 028131 106 ----EDKIAFAFRLYDLRQTGFIEREELKEMVLALLHESDLILSDDVIETIVDKSFSDADTNGDGKIDPEEWKEFVKK 179 (213)
Q Consensus 106 ----~~~~~~~F~~~D~d~~G~I~~~El~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~d~dg~Is~~ef~~~l~~ 179 (213)
.+.++.+|+.||.|++|+|+.+||+.++..+ |...+.++++.++ ..+|.|+||.|+|++|++++..
T Consensus 80 ~~~~~~el~eaF~~fD~d~~G~Is~~el~~~l~~l----g~~~~~~e~~~mi----~~~d~d~dg~i~f~ef~~~m~~ 149 (151)
T KOG0027|consen 80 EEASSEELKEAFRVFDKDGDGFISASELKKVLTSL----GEKLTDEECKEMI----REVDVDGDGKVNFEEFVKMMSG 149 (151)
T ss_pred ccccHHHHHHHHHHHccCCCCcCcHHHHHHHHHHh----CCcCCHHHHHHHH----HhcCCCCCCeEeHHHHHHHHhc
Confidence 4589999999999999999999999999999 9999999998888 7999999999999999999875
No 5
>PTZ00183 centrin; Provisional
Probab=99.85 E-value=9.5e-20 Score=135.18 Aligned_cols=149 Identities=26% Similarity=0.365 Sum_probs=130.5
Q ss_pred cCCCCHHHHHHHHHHHHHhhcCCCCCCCcCHHHHHHHHhcccC-cchHHHHHHHHHhcCCCCCcccHHHHHHHHhhhCCC
Q 028131 24 ETPFTVCEVEALYELFKKLSSSIFDDGIIHKEEFQLALFRNKN-KKNLFADRIFDLFDLKRNGVIEFGEFVRSLGVFHPH 102 (213)
Q Consensus 24 ~~~ls~~~i~~l~~~F~~~d~~~~~~G~l~~~e~~~~l~~~~~-~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~ 102 (213)
...+++.++.++...|..+|.+ ++|+|+..+|..++...+. .....+..++..+|.+++|.|++.+|..++......
T Consensus 8 ~~~~~~~~~~~~~~~F~~~D~~--~~G~i~~~e~~~~l~~~g~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~ 85 (158)
T PTZ00183 8 RPGLTEDQKKEIREAFDLFDTD--GSGTIDPKELKVAMRSLGFEPKKEEIKQMIADVDKDGSGKIDFEEFLDIMTKKLGE 85 (158)
T ss_pred cCCCCHHHHHHHHHHHHHhCCC--CCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHHhcC
Confidence 3458899999999999999999 9999999999998876553 355678999999999999999999999988765444
Q ss_pred CChHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhCCCCCCCcCHHHHHHHHHhChh
Q 028131 103 ALVEDKIAFAFRLYDLRQTGFIEREELKEMVLALLHESDLILSDDVIETIVDKSFSDADTNGDGKIDPEEWKEFVKKNPS 182 (213)
Q Consensus 103 ~~~~~~~~~~F~~~D~d~~G~I~~~El~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~d~dg~Is~~ef~~~l~~~~~ 182 (213)
....+.++.+|+.+|.+++|.|+.+||..++..+ |..+++.++..++ ..+|.+++|.|++++|..++...|-
T Consensus 86 ~~~~~~l~~~F~~~D~~~~G~i~~~e~~~~l~~~----~~~l~~~~~~~~~----~~~d~~~~g~i~~~ef~~~~~~~~~ 157 (158)
T PTZ00183 86 RDPREEILKAFRLFDDDKTGKISLKNLKRVAKEL----GETITDEELQEMI----DEADRNGDGEISEEEFYRIMKKTNL 157 (158)
T ss_pred CCcHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHh----CCCCCHHHHHHHH----HHhCCCCCCcCcHHHHHHHHhcccC
Confidence 5567889999999999999999999999999887 8899998877666 7899999999999999999988773
No 6
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=99.83 E-value=4.3e-19 Score=127.17 Aligned_cols=148 Identities=26% Similarity=0.382 Sum_probs=134.5
Q ss_pred hcCCCCHHHHHHHHHHHHHhhcCCCCCCCcCHHHHHHHHhcccCc-chHHHHHHHHHhcCCCCCcccHHHHHHHHhhhCC
Q 028131 23 AETPFTVCEVEALYELFKKLSSSIFDDGIIHKEEFQLALFRNKNK-KNLFADRIFDLFDLKRNGVIEFGEFVRSLGVFHP 101 (213)
Q Consensus 23 ~~~~ls~~~i~~l~~~F~~~d~~~~~~G~l~~~e~~~~l~~~~~~-~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~ 101 (213)
....+++++-+++...|+.+|.+ ++|+|+.++|..++.+++.. ....+.++...+|++++|.|+|++|...+.....
T Consensus 23 ~~~~l~~~q~q~i~e~f~lfd~~--~~g~iD~~EL~vAmralGFE~~k~ei~kll~d~dk~~~g~i~fe~f~~~mt~k~~ 100 (172)
T KOG0028|consen 23 PKSELTEEQKQEIKEAFELFDPD--MAGKIDVEELKVAMRALGFEPKKEEILKLLADVDKEGSGKITFEDFRRVMTVKLG 100 (172)
T ss_pred CCccccHHHHhhHHHHHHhhccC--CCCcccHHHHHHHHHHcCCCcchHHHHHHHHhhhhccCceechHHHHHHHHHHHh
Confidence 45678899999999999999999 99999999999899998865 5666788999999999999999999999765554
Q ss_pred CCChHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhCCCCCCCcCHHHHHHHHHhC
Q 028131 102 HALVEDKIAFAFRLYDLRQTGFIEREELKEMVLALLHESDLILSDDVIETIVDKSFSDADTNGDGKIDPEEWKEFVKKN 180 (213)
Q Consensus 102 ~~~~~~~~~~~F~~~D~d~~G~I~~~El~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~d~dg~Is~~ef~~~l~~~ 180 (213)
...+.+++..+|+.+|.|++|.|++.+|+.+...+ |+.++++++.++| ..+|.+++|.|+-++|..+++..
T Consensus 101 e~dt~eEi~~afrl~D~D~~Gkis~~~lkrvakeL----genltD~El~eMI----eEAd~d~dgevneeEF~~imk~t 171 (172)
T KOG0028|consen 101 ERDTKEEIKKAFRLFDDDKTGKISQRNLKRVAKEL----GENLTDEELMEMI----EEADRDGDGEVNEEEFIRIMKKT 171 (172)
T ss_pred ccCcHHHHHHHHHcccccCCCCcCHHHHHHHHHHh----CccccHHHHHHHH----HHhcccccccccHHHHHHHHhcC
Confidence 66789999999999999999999999999999999 9999999999999 79999999999999999998753
No 7
>PTZ00184 calmodulin; Provisional
Probab=99.83 E-value=7.9e-19 Score=128.76 Aligned_cols=144 Identities=24% Similarity=0.419 Sum_probs=125.8
Q ss_pred CCCHHHHHHHHHHHHHhhcCCCCCCCcCHHHHHHHHhcccC-cchHHHHHHHHHhcCCCCCcccHHHHHHHHhhhCCCCC
Q 028131 26 PFTVCEVEALYELFKKLSSSIFDDGIIHKEEFQLALFRNKN-KKNLFADRIFDLFDLKRNGVIEFGEFVRSLGVFHPHAL 104 (213)
Q Consensus 26 ~ls~~~i~~l~~~F~~~d~~~~~~G~l~~~e~~~~l~~~~~-~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~ 104 (213)
.++++++..+...|..+|.+ ++|.|+..+|..++...+. .....+..++..+|.+++|.|++++|+.++........
T Consensus 4 ~~~~~~~~~~~~~F~~~D~~--~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~~~ 81 (149)
T PTZ00184 4 QLTEEQIAEFKEAFSLFDKD--GDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTLMARKMKDTD 81 (149)
T ss_pred ccCHHHHHHHHHHHHHHcCC--CCCcCCHHHHHHHHHHhCCCCCHHHHHHHHHhcCcCCCCcCcHHHHHHHHHHhccCCc
Confidence 47889999999999999999 9999999999988855443 34557899999999999999999999999876654456
Q ss_pred hHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhCCCCCCCcCHHHHHHHHHh
Q 028131 105 VEDKIAFAFRLYDLRQTGFIEREELKEMVLALLHESDLILSDDVIETIVDKSFSDADTNGDGKIDPEEWKEFVKK 179 (213)
Q Consensus 105 ~~~~~~~~F~~~D~d~~G~I~~~El~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~d~dg~Is~~ef~~~l~~ 179 (213)
..+.+..+|+.+|.+++|.|+.+||..++..+ |..++.+.+..++ ..+|.+++|.|+|++|+.++..
T Consensus 82 ~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~----~~~~~~~~~~~~~----~~~d~~~~g~i~~~ef~~~~~~ 148 (149)
T PTZ00184 82 SEEEIKEAFKVFDRDGNGFISAAELRHVMTNL----GEKLTDEEVDEMI----READVDGDGQINYEEFVKMMMS 148 (149)
T ss_pred HHHHHHHHHHhhCCCCCCeEeHHHHHHHHHHH----CCCCCHHHHHHHH----HhcCCCCCCcCcHHHHHHHHhc
Confidence 67889999999999999999999999999887 8888888877665 7899999999999999988753
No 8
>KOG0038 consensus Ca2+-binding kinase interacting protein (KIP) (EF-Hand protein superfamily) [General function prediction only]
Probab=99.83 E-value=1.8e-19 Score=127.06 Aligned_cols=178 Identities=26% Similarity=0.414 Sum_probs=150.9
Q ss_pred CCccccccccCCCCCCchHhhhhcCCCCHHHHHHHHHHHHHhhcCCCCCC---------CcCHHHHHHHHhcccCcchHH
Q 028131 1 MGCVLTKKTKQTPGYEEPTVLAAETPFTVCEVEALYELFKKLSSSIFDDG---------IIHKEEFQLALFRNKNKKNLF 71 (213)
Q Consensus 1 mg~~~s~~~~~~~~~~~~~~l~~~~~ls~~~i~~l~~~F~~~d~~~~~~G---------~l~~~e~~~~l~~~~~~~~~~ 71 (213)
|||+..--.. +++..++..+.|+.++|-++..+|..+.++-++.. .++.+.+. ..+....+++
T Consensus 1 MGNK~~vFT~-----eqLd~YQDCTFFtrKdIlrl~~Rf~~L~P~lVP~~~~~~~~~~v~vp~e~i~---kMPELkenpf 72 (189)
T KOG0038|consen 1 MGNKQTVFTE-----EQLDEYQDCTFFTRKDILRLHKRFYELAPHLVPTDMTGNRPPIVKVPFELIE---KMPELKENPF 72 (189)
T ss_pred CCCccceeeH-----HHHhhhcccccccHHHHHHHHHHHHHhCcccccccccCCCCCceeecHHHHh---hChhhhcChH
Confidence 8886665554 88999999999999999999999999876543211 33333333 2233456777
Q ss_pred HHHHHHHhcCCCCCcccHHHHHHHHhhhCCCCChHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHhhhcCCCCCHHHHHH
Q 028131 72 ADRIFDLFDLKRNGVIEFGEFVRSLGVFHPHALVEDKIAFAFRLYDLRQTGFIEREELKEMVLALLHESDLILSDDVIET 151 (213)
Q Consensus 72 ~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~F~~~D~d~~G~I~~~El~~~l~~~~~~~~~~~~~~~~~~ 151 (213)
-+++...+..++.|.++|++|+..++.++...+.+-++..+|++||-|+|++|..++|...+.++- ...+++++++.
T Consensus 73 k~ri~e~FSeDG~GnlsfddFlDmfSV~sE~APrdlK~~YAFkIYDfd~D~~i~~~DL~~~l~~lT---r~eLs~eEv~~ 149 (189)
T KOG0038|consen 73 KRRICEVFSEDGRGNLSFDDFLDMFSVFSEMAPRDLKAKYAFKIYDFDGDEFIGHDDLEKTLTSLT---RDELSDEEVEL 149 (189)
T ss_pred HHHHHHHhccCCCCcccHHHHHHHHHHHHhhChHHhhhhheeEEeecCCCCcccHHHHHHHHHHHh---hccCCHHHHHH
Confidence 799999999999999999999999999987667777899999999999999999999999998874 67899999999
Q ss_pred HHHHHHHhhCCCCCCCcCHHHHHHHHHhChhhHhhcCc
Q 028131 152 IVDKSFSDADTNGDGKIDPEEWKEFVKKNPSLIKNMTL 189 (213)
Q Consensus 152 ~~~~~f~~~d~d~dg~Is~~ef~~~l~~~~~~~~~~~~ 189 (213)
+...+.+++|.|+||.+++.+|..++.+.|+++..+-+
T Consensus 150 i~ekvieEAD~DgDgkl~~~eFe~~i~raPDFlsTFHI 187 (189)
T KOG0038|consen 150 ICEKVIEEADLDGDGKLSFAEFEHVILRAPDFLSTFHI 187 (189)
T ss_pred HHHHHHHHhcCCCCCcccHHHHHHHHHhCcchHhhhee
Confidence 99999999999999999999999999999999987654
No 9
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=99.77 E-value=2.3e-17 Score=117.51 Aligned_cols=142 Identities=20% Similarity=0.325 Sum_probs=125.8
Q ss_pred hcCCCCHHHHHHHHHHHHHhhcCCCCCCCcCHHHHHHHHhcccCc-chHHHHHHHHHhcCCCCCcccHHHHHHHHhhhCC
Q 028131 23 AETPFTVCEVEALYELFKKLSSSIFDDGIIHKEEFQLALFRNKNK-KNLFADRIFDLFDLKRNGVIEFGEFVRSLGVFHP 101 (213)
Q Consensus 23 ~~~~ls~~~i~~l~~~F~~~d~~~~~~G~l~~~e~~~~l~~~~~~-~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~ 101 (213)
....|++.+|+++++.|..+|+| ++|.|+.++++..+..++.. ++..+..++. ..+|.|+|.-|+.+++...+
T Consensus 22 vFamf~q~QIqEfKEAF~~mDqn--rDG~IdkeDL~d~~aSlGk~~~d~elDaM~~----Ea~gPINft~FLTmfGekL~ 95 (171)
T KOG0031|consen 22 VFAMFDQSQIQEFKEAFNLMDQN--RDGFIDKEDLRDMLASLGKIASDEELDAMMK----EAPGPINFTVFLTMFGEKLN 95 (171)
T ss_pred HHHHhhHHHHHHHHHHHHHHhcc--CCCcccHHHHHHHHHHcCCCCCHHHHHHHHH----hCCCCeeHHHHHHHHHHHhc
Confidence 34578999999999999999999 99999999999999887744 4555555554 45689999999999987776
Q ss_pred CCChHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhCCCCCCCcCHHHHHHHHH
Q 028131 102 HALVEDKIAFAFRLYDLRQTGFIEREELKEMVLALLHESDLILSDDVIETIVDKSFSDADTNGDGKIDPEEWKEFVK 178 (213)
Q Consensus 102 ~~~~~~~~~~~F~~~D~d~~G~I~~~El~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~d~dg~Is~~ef~~~l~ 178 (213)
...+++.+..+|+.||.+++|.|..+.|+++|... |.++++++++.++ +.+-.|..|.+.|..|+.++.
T Consensus 96 gtdpe~~I~~AF~~FD~~~~G~I~~d~lre~Ltt~----gDr~~~eEV~~m~----r~~p~d~~G~~dy~~~~~~it 164 (171)
T KOG0031|consen 96 GTDPEEVILNAFKTFDDEGSGKIDEDYLRELLTTM----GDRFTDEEVDEMY----REAPIDKKGNFDYKAFTYIIT 164 (171)
T ss_pred CCCHHHHHHHHHHhcCccCCCccCHHHHHHHHHHh----cccCCHHHHHHHH----HhCCcccCCceeHHHHHHHHH
Confidence 77889999999999999999999999999999998 9999999998877 788888899999999999987
No 10
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=99.72 E-value=2.1e-16 Score=110.76 Aligned_cols=143 Identities=17% Similarity=0.252 Sum_probs=120.5
Q ss_pred CCCHHHHHHHHHHHHHhhcCCCCCCCcCHHHHHHHHhcccC-cchHHHHHHHHHhcCC--CCCcccHHHHHHHHhhhCCC
Q 028131 26 PFTVCEVEALYELFKKLSSSIFDDGIIHKEEFQLALFRNKN-KKNLFADRIFDLFDLK--RNGVIEFGEFVRSLGVFHPH 102 (213)
Q Consensus 26 ~ls~~~i~~l~~~F~~~d~~~~~~G~l~~~e~~~~l~~~~~-~~~~~~~~~~~~~d~~--~~~~i~~~ef~~~~~~~~~~ 102 (213)
.+++++..+++.+|..+|.. ++|+|+..+..+.|+.++. +++..+.+.......+ +-.+++|++|+-++..+.+.
T Consensus 4 ~~~~d~~~e~ke~F~lfD~~--gD~ki~~~q~gdvlRalG~nPT~aeV~k~l~~~~~~~~~~~rl~FE~fLpm~q~vakn 81 (152)
T KOG0030|consen 4 AFTPDQMEEFKEAFLLFDRT--GDGKISGSQVGDVLRALGQNPTNAEVLKVLGQPKRREMNVKRLDFEEFLPMYQQVAKN 81 (152)
T ss_pred ccCcchHHHHHHHHHHHhcc--CcccccHHHHHHHHHHhcCCCcHHHHHHHHcCcccchhhhhhhhHHHHHHHHHHHHhc
Confidence 45677788999999999999 9999999999999988874 4566677777777665 34679999999998766543
Q ss_pred --CChHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhCCCCCCCcCHHHHHHHHHh
Q 028131 103 --ALVEDKIAFAFRLYDLRQTGFIEREELKEMVLALLHESDLILSDDVIETIVDKSFSDADTNGDGKIDPEEWKEFVKK 179 (213)
Q Consensus 103 --~~~~~~~~~~F~~~D~d~~G~I~~~El~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~d~dg~Is~~ef~~~l~~ 179 (213)
+..-+.+-..++.||++++|.|...||+++|..+ |+.+++++++.++ ..-.|.+|.|.|+.|++.+..
T Consensus 82 k~q~t~edfvegLrvFDkeg~G~i~~aeLRhvLttl----Gekl~eeEVe~Ll-----ag~eD~nG~i~YE~fVk~i~~ 151 (152)
T KOG0030|consen 82 KDQGTYEDFVEGLRVFDKEGNGTIMGAELRHVLTTL----GEKLTEEEVEELL-----AGQEDSNGCINYEAFVKHIMS 151 (152)
T ss_pred cccCcHHHHHHHHHhhcccCCcceeHHHHHHHHHHH----HhhccHHHHHHHH-----ccccccCCcCcHHHHHHHHhc
Confidence 2345788899999999999999999999999999 9999999999998 445688899999999998753
No 11
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=99.69 E-value=1.1e-15 Score=115.31 Aligned_cols=139 Identities=24% Similarity=0.331 Sum_probs=121.4
Q ss_pred HHHHHHHHHHhhcCCCCCCCcCHHHHHHHHhccc--CcchHHHHHHHHHhcCCCCCcccHHHHHHHHhhhCCCCChHHHH
Q 028131 32 VEALYELFKKLSSSIFDDGIIHKEEFQLALFRNK--NKKNLFADRIFDLFDLKRNGVIEFGEFVRSLGVFHPHALVEDKI 109 (213)
Q Consensus 32 i~~l~~~F~~~d~~~~~~G~l~~~e~~~~l~~~~--~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~ 109 (213)
-..+...|...|.+ ++|.|+.+|+..+|.... ......+..+...+|.+++|+|++.||..++..+. .+
T Consensus 56 ~~~~~~~f~~vD~d--~sg~i~~~eLq~aLsn~~~~~Fs~~TcrlmI~mfd~~~~G~i~f~EF~~Lw~~i~-------~W 126 (221)
T KOG0037|consen 56 FPQLAGWFQSVDRD--RSGRILAKELQQALSNGTWSPFSIETCRLMISMFDRDNSGTIGFKEFKALWKYIN-------QW 126 (221)
T ss_pred cHHHHHHHHhhCcc--ccccccHHHHHHHhhcCCCCCCCHHHHHHHHHHhcCCCCCccCHHHHHHHHHHHH-------HH
Confidence 34678889999999 999999999999985332 33567789999999999999999999999997655 39
Q ss_pred HHHHHhcCCCCCCcccHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhCCCCCCCcCHHHHHHHHHhChhhHhhc
Q 028131 110 AFAFRLYDLRQTGFIEREELKEMVLALLHESDLILSDDVIETIVDKSFSDADTNGDGKIDPEEWKEFVKKNPSLIKNM 187 (213)
Q Consensus 110 ~~~F~~~D~d~~G~I~~~El~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~d~dg~Is~~ef~~~l~~~~~~~~~~ 187 (213)
+.+|+.||.|++|.|+..||+.+|..+ |..++++..+.++ +.+|.-+.|.|.+++|+.+|...+-+.+.+
T Consensus 127 r~vF~~~D~D~SG~I~~sEL~~Al~~~----Gy~Lspq~~~~lv----~kyd~~~~g~i~FD~FI~ccv~L~~lt~~F 196 (221)
T KOG0037|consen 127 RNVFRTYDRDRSGTIDSSELRQALTQL----GYRLSPQFYNLLV----RKYDRFGGGRIDFDDFIQCCVVLQRLTEAF 196 (221)
T ss_pred HHHHHhcccCCCCcccHHHHHHHHHHc----CcCCCHHHHHHHH----HHhccccCCceeHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999 9999999988888 788877799999999999998776666544
No 12
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=99.57 E-value=1.2e-13 Score=112.97 Aligned_cols=143 Identities=26% Similarity=0.387 Sum_probs=125.1
Q ss_pred hcCCCCHHHHHHHHHHHHHhhcCCCCCCCcCHHHHHHHHhcccC--cchHHHHHHHHHhcCCCCCcccHHHHHHHHhhhC
Q 028131 23 AETPFTVCEVEALYELFKKLSSSIFDDGIIHKEEFQLALFRNKN--KKNLFADRIFDLFDLKRNGVIEFGEFVRSLGVFH 100 (213)
Q Consensus 23 ~~~~ls~~~i~~l~~~F~~~d~~~~~~G~l~~~e~~~~l~~~~~--~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~ 100 (213)
......++--.++...|+.+|.+ ++|.++..++.+.+..+.. ........+|...|.|.+|.+||++|...+.
T Consensus 4 ~~~~~~~er~~r~~~lf~~lD~~--~~g~~d~~~l~k~~~~l~~~~~~~~~~~~l~~~~d~~~dg~vDy~eF~~Y~~--- 78 (463)
T KOG0036|consen 4 ALRETDEERDIRIRCLFKELDSK--NDGQVDLDQLEKGLEKLDHPKPNYEAAKMLFSAMDANRDGRVDYSEFKRYLD--- 78 (463)
T ss_pred cccCCcHHHHHHHHHHHHHhccC--CCCceeHHHHHHHHHhcCCCCCchHHHHHHHHhcccCcCCcccHHHHHHHHH---
Confidence 34445566667888999999998 9999999999988866554 3455678999999999999999999999884
Q ss_pred CCCChHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhCCCCCCCcCHHHHHHHHHhC
Q 028131 101 PHALVEDKIAFAFRLYDLRQTGFIEREELKEMVLALLHESDLILSDDVIETIVDKSFSDADTNGDGKIDPEEWKEFVKKN 180 (213)
Q Consensus 101 ~~~~~~~~~~~~F~~~D~d~~G~I~~~El~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~d~dg~Is~~ef~~~l~~~ 180 (213)
..+.++..+|+.+|.++||.|...|+...|..+ |..+++++++.++ +..|.++.+.|+++||+..+..+
T Consensus 79 ---~~E~~l~~~F~~iD~~hdG~i~~~Ei~~~l~~~----gi~l~de~~~k~~----e~~d~~g~~~I~~~e~rd~~ll~ 147 (463)
T KOG0036|consen 79 ---NKELELYRIFQSIDLEHDGKIDPNEIWRYLKDL----GIQLSDEKAAKFF----EHMDKDGKATIDLEEWRDHLLLY 147 (463)
T ss_pred ---HhHHHHHHHHhhhccccCCccCHHHHHHHHHHh----CCccCHHHHHHHH----HHhccCCCeeeccHHHHhhhhcC
Confidence 345679999999999999999999999999999 9999999988766 78899999999999999999988
Q ss_pred h
Q 028131 181 P 181 (213)
Q Consensus 181 ~ 181 (213)
|
T Consensus 148 p 148 (463)
T KOG0036|consen 148 P 148 (463)
T ss_pred C
Confidence 7
No 13
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=99.45 E-value=4.2e-13 Score=84.97 Aligned_cols=66 Identities=32% Similarity=0.623 Sum_probs=61.9
Q ss_pred HHHHHHHhcCCCCCCcccHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhCCCCCCCcCHHHHHHHH
Q 028131 108 KIAFAFRLYDLRQTGFIEREELKEMVLALLHESDLILSDDVIETIVDKSFSDADTNGDGKIDPEEWKEFV 177 (213)
Q Consensus 108 ~~~~~F~~~D~d~~G~I~~~El~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~d~dg~Is~~ef~~~l 177 (213)
+++.+|+.+|.|++|+|+.+||+.++..+ +...++..+..++..+|..+|.|++|.|+++||++++
T Consensus 1 ~l~~~F~~~D~d~~G~i~~~el~~~~~~~----~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 1 RLKEAFKKFDKDGDGYISKEELRRALKHL----GRDMSDEESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHHT----TSHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred CHHHHHHHHcCCccCCCCHHHHHHHHHHh----cccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 47899999999999999999999999998 8888899999999999999999999999999999875
No 14
>PLN02964 phosphatidylserine decarboxylase
Probab=99.42 E-value=4e-12 Score=111.90 Aligned_cols=134 Identities=19% Similarity=0.274 Sum_probs=106.2
Q ss_pred CCCchHhhhhc--CCCCHHHHHHHHHHHHHhhcCCCCCCCcCHHHHHHHHhcccC--cchH---HHHHHHHHhcCCCCCc
Q 028131 14 GYEEPTVLAAE--TPFTVCEVEALYELFKKLSSSIFDDGIIHKEEFQLALFRNKN--KKNL---FADRIFDLFDLKRNGV 86 (213)
Q Consensus 14 ~~~~~~~l~~~--~~ls~~~i~~l~~~F~~~d~~~~~~G~l~~~e~~~~l~~~~~--~~~~---~~~~~~~~~d~~~~~~ 86 (213)
++..+..++.. +.|+.+|+.++++.|+.+|.+ ++|.+ +..++..++. ..+. ++..+|..+|.+++|.
T Consensus 122 s~n~lv~~~e~~~t~f~~kqi~elkeaF~lfD~d--gdG~i----Lg~ilrslG~~~pte~e~~fi~~mf~~~D~DgdG~ 195 (644)
T PLN02964 122 SKNTLVGYCELDLFDFVTQEPESACESFDLLDPS--SSNKV----VGSIFVSCSIEDPVETERSFARRILAIVDYDEDGQ 195 (644)
T ss_pred CHHHhhhheeecHhhccHHHHHHHHHHHHHHCCC--CCCcC----HHHHHHHhCCCCCCHHHHHHHHHHHHHhCCCCCCe
Confidence 34677777777 889999999999999999999 99997 5555555551 2222 3789999999999999
Q ss_pred ccHHHHHHHHhhhCCCCChHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHhhh---------cCCCCCH-HHHHHHHH
Q 028131 87 IEFGEFVRSLGVFHPHALVEDKIAFAFRLYDLRQTGFIEREELKEMVLALLHE---------SDLILSD-DVIETIVD 154 (213)
Q Consensus 87 i~~~ef~~~~~~~~~~~~~~~~~~~~F~~~D~d~~G~I~~~El~~~l~~~~~~---------~~~~~~~-~~~~~~~~ 154 (213)
|++.||+.++..+. ....+++++.+|+.||.|++|+|+.+||+.++...... -|..++. ++++.+++
T Consensus 196 IdfdEFl~lL~~lg-~~~seEEL~eaFk~fDkDgdG~Is~dEL~~vL~~~~~~~~~~~~cp~cg~~l~~~~~~~~iiH 272 (644)
T PLN02964 196 LSFSEFSDLIKAFG-NLVAANKKEELFKAADLNGDGVVTIDELAALLALQQEQEPIINNCPVCGEALGVSDKLNAMIH 272 (644)
T ss_pred EcHHHHHHHHHHhc-cCCCHHHHHHHHHHhCCCCCCcCCHHHHHHHHHhcccCcchhhhchhhcCcccchhhHHHHHH
Confidence 99999999998765 46778899999999999999999999999999872000 0555655 56666663
No 15
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.27 E-value=9.5e-11 Score=86.48 Aligned_cols=105 Identities=25% Similarity=0.339 Sum_probs=88.7
Q ss_pred HHHHHHHHHhcCCCCCcccHHHHHHHHhhhCCCCChHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHhhhcCCCCCHH-H
Q 028131 70 LFADRIFDLFDLKRNGVIEFGEFVRSLGVFHPHALVEDKIAFAFRLYDLRQTGFIEREELKEMVLALLHESDLILSDD-V 148 (213)
Q Consensus 70 ~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~F~~~D~d~~G~I~~~El~~~l~~~~~~~~~~~~~~-~ 148 (213)
..+..+|..+|.+++|.|+-.++..++..+. ..+.+..+..+++.+|.+++|.|+.+||..++... ....... .
T Consensus 8 ~el~~~F~~fD~d~~G~i~~~el~~~lr~lg-~~~t~~el~~~~~~~D~dg~g~I~~~eF~~l~~~~----~~~~~~~~~ 82 (151)
T KOG0027|consen 8 LELKEAFQLFDKDGDGKISVEELGAVLRSLG-QNPTEEELRDLIKEIDLDGDGTIDFEEFLDLMEKL----GEEKTDEEA 82 (151)
T ss_pred HHHHHHHHHHCCCCCCcccHHHHHHHHHHcC-CCCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHhh----hcccccccc
Confidence 3468899999999999999999999998887 67889999999999999999999999999999876 3222221 1
Q ss_pred HHHHHHHHHHhhCCCCCCCcCHHHHHHHHHh
Q 028131 149 IETIVDKSFSDADTNGDGKIDPEEWKEFVKK 179 (213)
Q Consensus 149 ~~~~~~~~f~~~d~d~dg~Is~~ef~~~l~~ 179 (213)
-..-+..+|..+|.|++|.||+.|+..++..
T Consensus 83 ~~~el~eaF~~fD~d~~G~Is~~el~~~l~~ 113 (151)
T KOG0027|consen 83 SSEELKEAFRVFDKDGDGFISASELKKVLTS 113 (151)
T ss_pred cHHHHHHHHHHHccCCCCcCcHHHHHHHHHH
Confidence 2223567789999999999999999999976
No 16
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=99.25 E-value=3.1e-11 Score=80.59 Aligned_cols=66 Identities=21% Similarity=0.337 Sum_probs=58.7
Q ss_pred HHHHHHHHhcCC-CCCCcccHHHHHHHHHH-HhhhcCCCCCH-HHHHHHHHHHHHhhCCCCCCCcCHHHHHHHHHhC
Q 028131 107 DKIAFAFRLYDL-RQTGFIEREELKEMVLA-LLHESDLILSD-DVIETIVDKSFSDADTNGDGKIDPEEWKEFVKKN 180 (213)
Q Consensus 107 ~~~~~~F~~~D~-d~~G~I~~~El~~~l~~-~~~~~~~~~~~-~~~~~~~~~~f~~~d~d~dg~Is~~ef~~~l~~~ 180 (213)
..+..+|+.||. +++|+|+.+||+.++.. + |..++. ++++.++ ..+|.|+||.|+|+||+.++...
T Consensus 8 ~~l~~~F~~fd~~~~~g~i~~~ELk~ll~~el----g~~ls~~~~v~~mi----~~~D~d~DG~I~F~EF~~l~~~l 76 (89)
T cd05022 8 ETLVSNFHKASVKGGKESLTASEFQELLTQQL----PHLLKDVEGLEEKM----KNLDVNQDSKLSFEEFWELIGEL 76 (89)
T ss_pred HHHHHHHHHHhCCCCCCeECHHHHHHHHHHHh----hhhccCHHHHHHHH----HHhCCCCCCCCcHHHHHHHHHHH
Confidence 458899999999 99999999999999998 7 777887 7777776 89999999999999999998654
No 17
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.17 E-value=5.2e-10 Score=89.45 Aligned_cols=142 Identities=21% Similarity=0.280 Sum_probs=109.9
Q ss_pred HHHHHHHHHHhhcCCCCCCCcCHHHHHHHHhccc-CcchHHHHHHHHHhcCCCCCcccHHHHHHHHhhhCC-------CC
Q 028131 32 VEALYELFKKLSSSIFDDGIIHKEEFQLALFRNK-NKKNLFADRIFDLFDLKRNGVIEFGEFVRSLGVFHP-------HA 103 (213)
Q Consensus 32 i~~l~~~F~~~d~~~~~~G~l~~~e~~~~l~~~~-~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~-------~~ 103 (213)
-.++...+..+|.+ .+|.|+..++..++.... ........+-+...|.+.+|.|+|+++........- ..
T Consensus 76 ~~rl~~l~~~iD~~--~Dgfv~~~El~~wi~~s~k~~v~~~~~~~~~~~d~~~Dg~i~~eey~~~~~~~~~~~~~~~d~e 153 (325)
T KOG4223|consen 76 QERLGKLVPKIDSD--SDGFVTESELKAWIMQSQKKYVVEEAARRWDEYDKNKDGFITWEEYLPQTYGRVDLPDEFPDEE 153 (325)
T ss_pred HHHHHHHHhhhcCC--CCCceeHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccceeeHHHhhhhhhhcccCccccccch
Confidence 34788889999988 999999999997763332 223334577788899999999999999988764320 00
Q ss_pred Ch------HHHHHHHHHhcCCCCCCcccHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhCCCCCCCcCHHHHHHHH
Q 028131 104 LV------EDKIAFAFRLYDLRQTGFIEREELKEMVLALLHESDLILSDDVIETIVDKSFSDADTNGDGKIDPEEWKEFV 177 (213)
Q Consensus 104 ~~------~~~~~~~F~~~D~d~~G~I~~~El~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~d~dg~Is~~ef~~~l 177 (213)
.. -.+-+.-|+.-|.|++|.++.+||..++ +|.--+....-++..-+...|.|+||.|+++||+.-+
T Consensus 154 ~~~~~~km~~rDe~rFk~AD~d~dg~lt~EEF~aFL-------HPEe~p~M~~iVi~Etl~d~Dkn~DG~I~~eEfigd~ 226 (325)
T KOG4223|consen 154 DNEEYKKMIARDEERFKAADQDGDGSLTLEEFTAFL-------HPEEHPHMKDIVIAETLEDIDKNGDGKISLEEFIGDL 226 (325)
T ss_pred hcHHHHHHHHHHHHHHhhcccCCCCcccHHHHHhcc-------ChhhcchHHHHHHHHHHhhcccCCCCceeHHHHHhHH
Confidence 00 1256788999999999999999999998 5555556666666777789999999999999999999
Q ss_pred HhChh
Q 028131 178 KKNPS 182 (213)
Q Consensus 178 ~~~~~ 182 (213)
...+.
T Consensus 227 ~~~~~ 231 (325)
T KOG4223|consen 227 YSHEG 231 (325)
T ss_pred hhccC
Confidence 87653
No 18
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=99.17 E-value=2.2e-10 Score=76.53 Aligned_cols=65 Identities=26% Similarity=0.469 Sum_probs=58.4
Q ss_pred HHHHHHHHhcC-CCCCC-cccHHHHHHHHHH-----HhhhcCCCCCHHHHHHHHHHHHHhhCCCCCCCcCHHHHHHHHHh
Q 028131 107 DKIAFAFRLYD-LRQTG-FIEREELKEMVLA-----LLHESDLILSDDVIETIVDKSFSDADTNGDGKIDPEEWKEFVKK 179 (213)
Q Consensus 107 ~~~~~~F~~~D-~d~~G-~I~~~El~~~l~~-----~~~~~~~~~~~~~~~~~~~~~f~~~d~d~dg~Is~~ef~~~l~~ 179 (213)
..+..+|+.|| .+|+| .|+.+||+.+++. + |..+++++++.++ ..+|.|++|.|+|++|+.++..
T Consensus 8 ~~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~l----g~~~~~~~v~~~i----~~~D~n~dG~v~f~eF~~li~~ 79 (88)
T cd05027 8 VALIDVFHQYSGREGDKHKLKKSELKELINNELSHFL----EEIKEQEVVDKVM----ETLDSDGDGECDFQEFMAFVAM 79 (88)
T ss_pred HHHHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHh----cCCCCHHHHHHHH----HHhCCCCCCcCcHHHHHHHHHH
Confidence 45899999998 79999 5999999999998 5 8888988888888 7889999999999999998864
No 19
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.14 E-value=4.4e-10 Score=89.86 Aligned_cols=137 Identities=22% Similarity=0.282 Sum_probs=101.7
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCCcCHHHHHHHHhccc--CcchHHHHHHHHHhcCCCCCcccHHHHHHHHhhhCCCCChH
Q 028131 29 VCEVEALYELFKKLSSSIFDDGIIHKEEFQLALFRNK--NKKNLFADRIFDLFDLKRNGVIEFGEFVRSLGVFHPHALVE 106 (213)
Q Consensus 29 ~~~i~~l~~~F~~~d~~~~~~G~l~~~e~~~~l~~~~--~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~ 106 (213)
.+.+.+-.++|+.-|.+ ++|.++.+||..+|..-- .-....+...+.-.|+|++|.|+++||+.=+.........+
T Consensus 159 ~km~~rDe~rFk~AD~d--~dg~lt~EEF~aFLHPEe~p~M~~iVi~Etl~d~Dkn~DG~I~~eEfigd~~~~~~~~~ep 236 (325)
T KOG4223|consen 159 KKMIARDEERFKAADQD--GDGSLTLEEFTAFLHPEEHPHMKDIVIAETLEDIDKNGDGKISLEEFIGDLYSHEGNEEEP 236 (325)
T ss_pred HHHHHHHHHHHhhcccC--CCCcccHHHHHhccChhhcchHHHHHHHHHHhhcccCCCCceeHHHHHhHHhhccCCCCCc
Confidence 45566667899999999 999999999996663322 12345578889999999999999999998875444221111
Q ss_pred ----HHHHHHHHhcCCCCCCcccHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhCCCCCCCcCHHHHHH
Q 028131 107 ----DKIAFAFRLYDLRQTGFIEREELKEMVLALLHESDLILSDDVIETIVDKSFSDADTNGDGKIDPEEWKE 175 (213)
Q Consensus 107 ----~~~~~~F~~~D~d~~G~I~~~El~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~d~dg~Is~~ef~~ 175 (213)
.+-...+..+|.|+||+++.+|+++-+.-. +......++. .++...|.|+||++|++|.+.
T Consensus 237 eWv~~Ere~F~~~~DknkDG~L~~dEl~~WI~P~----~~d~A~~EA~----hL~~eaD~dkD~kLs~eEIl~ 301 (325)
T KOG4223|consen 237 EWVLTEREQFFEFRDKNKDGKLDGDELLDWILPS----EQDHAKAEAR----HLLHEADEDKDGKLSKEEILE 301 (325)
T ss_pred ccccccHHHHHHHhhcCCCCccCHHHHhcccCCC----CccHHHHHHH----HHhhhhccCccccccHHHHhh
Confidence 345578888999999999999999765321 3333344544 444899999999999999764
No 20
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=99.13 E-value=2.9e-09 Score=80.82 Aligned_cols=130 Identities=20% Similarity=0.312 Sum_probs=107.0
Q ss_pred cCCCCHHHHHHHHHHHHHhhcCCCCCCCcCHHHHHHHHhcccCcchHHHHHHHHHhcCCCCCcccHHHHHHHHhhhCCCC
Q 028131 24 ETPFTVCEVEALYELFKKLSSSIFDDGIIHKEEFQLALFRNKNKKNLFADRIFDLFDLKRNGVIEFGEFVRSLGVFHPHA 103 (213)
Q Consensus 24 ~~~ls~~~i~~l~~~F~~~d~~~~~~G~l~~~e~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~ 103 (213)
-..|+.+-++-+..+|+.- .+|+|+.+||....+.+ ...+.+|+.+|+|++|.|+..|+..++..+- -.
T Consensus 88 ~~~Fs~~TcrlmI~mfd~~-----~~G~i~f~EF~~Lw~~i-----~~Wr~vF~~~D~D~SG~I~~sEL~~Al~~~G-y~ 156 (221)
T KOG0037|consen 88 WSPFSIETCRLMISMFDRD-----NSGTIGFKEFKALWKYI-----NQWRNVFRTYDRDRSGTIDSSELRQALTQLG-YR 156 (221)
T ss_pred CCCCCHHHHHHHHHHhcCC-----CCCccCHHHHHHHHHHH-----HHHHHHHHhcccCCCCcccHHHHHHHHHHcC-cC
Confidence 4567777777777666544 99999999999554333 2237899999999999999999999998777 57
Q ss_pred ChHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhCCCCCCC--cCHHHHHHHHH
Q 028131 104 LVEDKIAFAFRLYDLRQTGFIEREELKEMVLALLHESDLILSDDVIETIVDKSFSDADTNGDGK--IDPEEWKEFVK 178 (213)
Q Consensus 104 ~~~~~~~~~F~~~D~d~~G~I~~~El~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~d~dg~--Is~~ef~~~l~ 178 (213)
..++.+..+++.||..++|.|.+++|.++|..+ ..+-.+|...|.+.+|. |+|++|+.+..
T Consensus 157 Lspq~~~~lv~kyd~~~~g~i~FD~FI~ccv~L--------------~~lt~~Fr~~D~~q~G~i~~~y~dfl~~t~ 219 (221)
T KOG0037|consen 157 LSPQFYNLLVRKYDRFGGGRIDFDDFIQCCVVL--------------QRLTEAFRRRDTAQQGSITISYDDFLQMTM 219 (221)
T ss_pred CCHHHHHHHHHHhccccCCceeHHHHHHHHHHH--------------HHHHHHHHHhccccceeEEEeHHHHHHHhh
Confidence 888999999999999989999999999999765 22457788999999995 77999998754
No 21
>PTZ00184 calmodulin; Provisional
Probab=99.13 E-value=1.3e-09 Score=79.65 Aligned_cols=100 Identities=19% Similarity=0.259 Sum_probs=82.2
Q ss_pred HHHHHHHhcCCCCCcccHHHHHHHHhhhCCCCChHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHhhhcCCCCCHHHHHH
Q 028131 72 ADRIFDLFDLKRNGVIEFGEFVRSLGVFHPHALVEDKIAFAFRLYDLRQTGFIEREELKEMVLALLHESDLILSDDVIET 151 (213)
Q Consensus 72 ~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~F~~~D~d~~G~I~~~El~~~l~~~~~~~~~~~~~~~~~~ 151 (213)
....|..+|.+++|.|++.+|..++..+. .....+.+..+|+.+|.+++|.|+.++|..++...+ .... ...
T Consensus 13 ~~~~F~~~D~~~~G~i~~~e~~~~l~~~~-~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~----~~~~---~~~ 84 (149)
T PTZ00184 13 FKEAFSLFDKDGDGTITTKELGTVMRSLG-QNPTEAELQDMINEVDADGNGTIDFPEFLTLMARKM----KDTD---SEE 84 (149)
T ss_pred HHHHHHHHcCCCCCcCCHHHHHHHHHHhC-CCCCHHHHHHHHHhcCcCCCCcCcHHHHHHHHHHhc----cCCc---HHH
Confidence 46889999999999999999999887655 345577899999999999999999999999987542 1111 223
Q ss_pred HHHHHHHhhCCCCCCCcCHHHHHHHHHh
Q 028131 152 IVDKSFSDADTNGDGKIDPEEWKEFVKK 179 (213)
Q Consensus 152 ~~~~~f~~~d~d~dg~Is~~ef~~~l~~ 179 (213)
.+..+|..+|.+++|.|+.++|..++..
T Consensus 85 ~~~~~F~~~D~~~~g~i~~~e~~~~l~~ 112 (149)
T PTZ00184 85 EIKEAFKVFDRDGNGFISAAELRHVMTN 112 (149)
T ss_pred HHHHHHHhhCCCCCCeEeHHHHHHHHHH
Confidence 3567789999999999999999999864
No 22
>PTZ00183 centrin; Provisional
Probab=99.11 E-value=2.9e-09 Score=78.64 Aligned_cols=101 Identities=23% Similarity=0.257 Sum_probs=83.0
Q ss_pred HHHHHHHHhcCCCCCcccHHHHHHHHhhhCCCCChHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHhhhcCCCCCHHHHH
Q 028131 71 FADRIFDLFDLKRNGVIEFGEFVRSLGVFHPHALVEDKIAFAFRLYDLRQTGFIEREELKEMVLALLHESDLILSDDVIE 150 (213)
Q Consensus 71 ~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~F~~~D~d~~G~I~~~El~~~l~~~~~~~~~~~~~~~~~ 150 (213)
.+..+|..+|.+++|.|++.+|..++.... .......+..+|+.+|.+++|.|+.+||..++.... ......+.
T Consensus 18 ~~~~~F~~~D~~~~G~i~~~e~~~~l~~~g-~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~---~~~~~~~~-- 91 (158)
T PTZ00183 18 EIREAFDLFDTDGSGTIDPKELKVAMRSLG-FEPKKEEIKQMIADVDKDGSGKIDFEEFLDIMTKKL---GERDPREE-- 91 (158)
T ss_pred HHHHHHHHhCCCCCCcccHHHHHHHHHHhC-CCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHHh---cCCCcHHH--
Confidence 457889999999999999999999987654 345667899999999999999999999999886542 22223323
Q ss_pred HHHHHHHHhhCCCCCCCcCHHHHHHHHHh
Q 028131 151 TIVDKSFSDADTNGDGKIDPEEWKEFVKK 179 (213)
Q Consensus 151 ~~~~~~f~~~d~d~dg~Is~~ef~~~l~~ 179 (213)
++.+|..+|.+++|.|+.++|..++..
T Consensus 92 --l~~~F~~~D~~~~G~i~~~e~~~~l~~ 118 (158)
T PTZ00183 92 --ILKAFRLFDDDKTGKISLKNLKRVAKE 118 (158)
T ss_pred --HHHHHHHhCCCCCCcCcHHHHHHHHHH
Confidence 467779999999999999999999974
No 23
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=99.09 E-value=1.7e-09 Score=89.63 Aligned_cols=140 Identities=19% Similarity=0.206 Sum_probs=103.0
Q ss_pred HHHHHHHHhhcCCCCCCCcCHHHHHHHHhcccCcchHHHHHHHHHhcCCCCCcccHHHHHHHHhhhCCCC----------
Q 028131 34 ALYELFKKLSSSIFDDGIIHKEEFQLALFRNKNKKNLFADRIFDLFDLKRNGVIEFGEFVRSLGVFHPHA---------- 103 (213)
Q Consensus 34 ~l~~~F~~~d~~~~~~G~l~~~e~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~---------- 103 (213)
+|...|+.+|.. ++|+|+..+...++-......-+|..-.=.......+|.+.|..-+..+..-....
T Consensus 465 dL~~eF~~~D~~--ksG~lsis~Wa~~mE~i~~L~LPWr~L~~kla~~s~d~~v~Y~~~~~~l~~e~~~~ea~~slvetL 542 (631)
T KOG0377|consen 465 DLEDEFRKYDPK--KSGKLSISHWAKCMENITGLNLPWRLLRPKLANGSDDGKVEYKSTLDNLDTEVILEEAGSSLVETL 542 (631)
T ss_pred HHHHHHHhcChh--hcCeeeHHHHHHHHHHHhcCCCcHHHhhhhccCCCcCcceehHhHHHHhhhhhHHHHHHhHHHHHH
Confidence 466789999999 99999999998776333222222322222233444566787777666553211100
Q ss_pred -ChHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhCCCCCCCcCHHHHHHHHHh
Q 028131 104 -LVEDKIAFAFRLYDLRQTGFIEREELKEMVLALLHESDLILSDDVIETIVDKSFSDADTNGDGKIDPEEWKEFVKK 179 (213)
Q Consensus 104 -~~~~~~~~~F~~~D~d~~G~I~~~El~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~d~dg~Is~~ef~~~l~~ 179 (213)
.....++.+|+.+|.|++|.|+.+||++++.-+..+....+++.++.++. +.+|.|+||.|++.||+..++.
T Consensus 543 Yr~ks~LetiF~~iD~D~SG~isldEF~~a~~l~~sh~~~~i~~~~i~~la----~~mD~NkDG~IDlNEfLeAFrl 615 (631)
T KOG0377|consen 543 YRNKSSLETIFNIIDADNSGEISLDEFRTAWKLLSSHMNGAISDDEILELA----RSMDLNKDGKIDLNEFLEAFRL 615 (631)
T ss_pred HhchhhHHHHHHHhccCCCCceeHHHHHHHHHHHHhhcCCCcCHHHHHHHH----HhhccCCCCcccHHHHHHHHhh
Confidence 11245899999999999999999999999998877778888888888877 7899999999999999999874
No 24
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.07 E-value=5.2e-09 Score=76.85 Aligned_cols=99 Identities=21% Similarity=0.266 Sum_probs=85.4
Q ss_pred HHHHHHHhcCCCCCcccHHHHHHHHhhhCCCCChHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHhhhcCCCCCHHHHHH
Q 028131 72 ADRIFDLFDLKRNGVIEFGEFVRSLGVFHPHALVEDKIAFAFRLYDLRQTGFIEREELKEMVLALLHESDLILSDDVIET 151 (213)
Q Consensus 72 ~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~F~~~D~d~~G~I~~~El~~~l~~~~~~~~~~~~~~~~~~ 151 (213)
+.+.|..+|.+++|.|+..++..++..+. ...+...+..+|..+|. |.|.|++.+|..++.... ....++++
T Consensus 22 lkeaF~l~D~d~~G~I~~~el~~ilr~lg-~~~s~~ei~~l~~~~d~-~~~~idf~~Fl~~ms~~~---~~~~~~Ee--- 93 (160)
T COG5126 22 LKEAFQLFDRDSDGLIDRNELGKILRSLG-FNPSEAEINKLFEEIDA-GNETVDFPEFLTVMSVKL---KRGDKEEE--- 93 (160)
T ss_pred HHHHHHHhCcCCCCCCcHHHHHHHHHHcC-CCCcHHHHHHHHHhccC-CCCccCHHHHHHHHHHHh---ccCCcHHH---
Confidence 47889999999999999999999998555 78889999999999999 999999999999997663 33344445
Q ss_pred HHHHHHHhhCCCCCCCcCHHHHHHHHHh
Q 028131 152 IVDKSFSDADTNGDGKIDPEEWKEFVKK 179 (213)
Q Consensus 152 ~~~~~f~~~d~d~dg~Is~~ef~~~l~~ 179 (213)
+.++|+.+|.|++|.|+..+++.++..
T Consensus 94 -l~~aF~~fD~d~dG~Is~~eL~~vl~~ 120 (160)
T COG5126 94 -LREAFKLFDKDHDGYISIGELRRVLKS 120 (160)
T ss_pred -HHHHHHHhCCCCCceecHHHHHHHHHh
Confidence 456679999999999999999999974
No 25
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.05 E-value=2.1e-09 Score=81.50 Aligned_cols=112 Identities=21% Similarity=0.253 Sum_probs=91.1
Q ss_pred CcchHHHHHHHHHhcCC-CCCcccHHHHHHHHhhhCCCCChHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHhhhcCCCC
Q 028131 66 NKKNLFADRIFDLFDLK-RNGVIEFGEFVRSLGVFHPHALVEDKIAFAFRLYDLRQTGFIEREELKEMVLALLHESDLIL 144 (213)
Q Consensus 66 ~~~~~~~~~~~~~~d~~-~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~F~~~D~d~~G~I~~~El~~~l~~~~~~~~~~~ 144 (213)
.....+++.+++.+-.+ .+|.++.++|..+.+.+...+....-...+|+.||.|++|.|+..||...+..+
T Consensus 22 ~f~~~ei~~~Yr~Fk~~cP~G~~~~~~F~~i~~~~fp~gd~~~y~~~vF~~fD~~~dg~i~F~Efi~als~~-------- 93 (193)
T KOG0044|consen 22 KFSKKEIQQWYRGFKNECPSGRLTLEEFREIYASFFPDGDASKYAELVFRTFDKNKDGTIDFLEFICALSLT-------- 93 (193)
T ss_pred CCCHHHHHHHHHHhcccCCCCccCHHHHHHHHHHHCCCCCHHHHHHHHHHHhcccCCCCcCHHHHHHHHHHH--------
Confidence 34555667777777554 479999999999999888778888899999999999999999999988888765
Q ss_pred CHHHHHHHHHHHHHhhCCCCCCCcCHHHHHHHHHhChhhHh
Q 028131 145 SDDVIETIVDKSFSDADTNGDGKIDPEEWKEFVKKNPSLIK 185 (213)
Q Consensus 145 ~~~~~~~~~~~~f~~~d~d~dg~Is~~ef~~~l~~~~~~~~ 185 (213)
+...+++.++++|...|.|++|.|+++|+..++...-.+..
T Consensus 94 ~rGt~eekl~w~F~lyD~dgdG~It~~Eml~iv~~i~~m~~ 134 (193)
T KOG0044|consen 94 SRGTLEEKLKWAFRLYDLDGDGYITKEEMLKIVQAIYQMTG 134 (193)
T ss_pred cCCcHHHHhhhhheeecCCCCceEcHHHHHHHHHHHHHHcc
Confidence 22334455678899999999999999999999976544433
No 26
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=99.02 E-value=1.8e-09 Score=73.13 Aligned_cols=71 Identities=24% Similarity=0.320 Sum_probs=57.9
Q ss_pred HHHHHHHHHhcCC-CC-CCcccHHHHHHHHHHHh-hhcCCCCCHHHHHHHHHHHHHhhCCCCCCCcCHHHHHHHHHhC
Q 028131 106 EDKIAFAFRLYDL-RQ-TGFIEREELKEMVLALL-HESDLILSDDVIETIVDKSFSDADTNGDGKIDPEEWKEFVKKN 180 (213)
Q Consensus 106 ~~~~~~~F~~~D~-d~-~G~I~~~El~~~l~~~~-~~~~~~~~~~~~~~~~~~~f~~~d~d~dg~Is~~ef~~~l~~~ 180 (213)
...++.+|+.||. +| +|.|+.+||+.++...+ ...+..++.++++.++ ..+|.+++|.|+|++|+.++...
T Consensus 7 ~~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~----~~~D~~~dg~I~f~eF~~l~~~~ 80 (94)
T cd05031 7 MESLILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKNQKDPMAVDKIM----KDLDQNRDGKVNFEEFVSLVAGL 80 (94)
T ss_pred HHHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhccccHHHHHHHH----HHhCCCCCCcCcHHHHHHHHHHH
Confidence 3568999999997 97 69999999999998621 1126677888877776 78999999999999999988754
No 27
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=98.99 E-value=3.7e-09 Score=71.47 Aligned_cols=70 Identities=23% Similarity=0.288 Sum_probs=54.8
Q ss_pred HHHHHHHHhcC-CCCCC-cccHHHHHHHHHHHh-hhcCCCCCHHHHHHHHHHHHHhhCCCCCCCcCHHHHHHHHHhC
Q 028131 107 DKIAFAFRLYD-LRQTG-FIEREELKEMVLALL-HESDLILSDDVIETIVDKSFSDADTNGDGKIDPEEWKEFVKKN 180 (213)
Q Consensus 107 ~~~~~~F~~~D-~d~~G-~I~~~El~~~l~~~~-~~~~~~~~~~~~~~~~~~~f~~~d~d~dg~Is~~ef~~~l~~~ 180 (213)
..+..+|+.|| .||+| +|+..||+.++...+ .......++.+++.++ ..+|.|++|.|+|+||+.++...
T Consensus 10 ~~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~----~elD~n~dG~Idf~EF~~l~~~l 82 (93)
T cd05026 10 DTLIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIM----NDLDSNKDNEVDFNEFVVLVAAL 82 (93)
T ss_pred HHHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHH----HHhCCCCCCCCCHHHHHHHHHHH
Confidence 45788899999 78998 599999999997632 1113334666776666 89999999999999999998754
No 28
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=98.98 E-value=3e-09 Score=71.02 Aligned_cols=68 Identities=22% Similarity=0.329 Sum_probs=57.4
Q ss_pred HHHHHHHHhcCC-CC-CCcccHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhCCCCCCCcCHHHHHHHHHh
Q 028131 107 DKIAFAFRLYDL-RQ-TGFIEREELKEMVLALLHESDLILSDDVIETIVDKSFSDADTNGDGKIDPEEWKEFVKK 179 (213)
Q Consensus 107 ~~~~~~F~~~D~-d~-~G~I~~~El~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~d~dg~Is~~ef~~~l~~ 179 (213)
..+..+|..||. +| +|+|+.+||+.++... ...|..+++++++.++ ...|.|++|.|+|+||+.++..
T Consensus 10 ~~~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~-~~lg~k~t~~ev~~m~----~~~D~d~dG~Idf~EFv~lm~~ 79 (88)
T cd05029 10 GLLVAIFHKYSGREGDKNTLSKKELKELIQKE-LTIGSKLQDAEIAKLM----EDLDRNKDQEVNFQEYVTFLGA 79 (88)
T ss_pred HHHHHHHHHHHccCCCCCEECHHHHHHHHHHH-HhcCCCCCHHHHHHHH----HHhcCCCCCCCcHHHHHHHHHH
Confidence 357889999998 77 8999999999999741 1128889999988877 7889999999999999998865
No 29
>KOG0040 consensus Ca2+-binding actin-bundling protein (spectrin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=98.97 E-value=2.3e-08 Score=92.94 Aligned_cols=143 Identities=19% Similarity=0.280 Sum_probs=117.0
Q ss_pred hhcCCCCHHHHHHHHHHHHHhhcCCCCCCCcCHHHHHHHHhccc--------CcchHHHHHHHHHhcCCCCCcccHHHHH
Q 028131 22 AAETPFTVCEVEALYELFKKLSSSIFDDGIIHKEEFQLALFRNK--------NKKNLFADRIFDLFDLKRNGVIEFGEFV 93 (213)
Q Consensus 22 ~~~~~ls~~~i~~l~~~F~~~d~~~~~~G~l~~~e~~~~l~~~~--------~~~~~~~~~~~~~~d~~~~~~i~~~ef~ 93 (213)
+..++.|+++++++..+|+.+|.+ .+|+++..+|..+|+.++ ..+++.+++++..+|.+.+|.|+.++|.
T Consensus 2242 rn~~GVtEe~L~EFs~~fkhFDke--k~G~Ldhq~F~sCLrslgY~lpmvEe~~~~p~fe~~ld~vDP~r~G~Vsl~dY~ 2319 (2399)
T KOG0040|consen 2242 RNHNGVTEEQLKEFSMMFKHFDKE--KNGRLDHQHFKSCLRSLGYDLPMVEEGEPEPEFEEILDLVDPNRDGYVSLQDYM 2319 (2399)
T ss_pred hccCCCCHHHHHHHHHHHHHhchh--hccCCcHHHHHHHHHhcCCCCcccccCCCChhHHHHHHhcCCCCcCcccHHHHH
Confidence 457899999999999999999999 999999999999997655 2346688999999999999999999999
Q ss_pred HHHhhhCC-CCChHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhCCC----CCCCc
Q 028131 94 RSLGVFHP-HALVEDKIAFAFRLYDLRQTGFIEREELKEMVLALLHESDLILSDDVIETIVDKSFSDADTN----GDGKI 168 (213)
Q Consensus 94 ~~~~~~~~-~~~~~~~~~~~F~~~D~d~~G~I~~~El~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~d----~dg~I 168 (213)
.++....+ +-...+.|+.+|+.+|. +..||+.+++.. .+++++++-.+..+=..+++. ..+.+
T Consensus 2320 afmi~~ETeNI~s~~eIE~AfraL~a-~~~yvtke~~~~-----------~ltreqaefc~s~m~~~~e~~~~~s~q~~l 2387 (2399)
T KOG0040|consen 2320 AFMISKETENILSSEEIEDAFRALDA-GKPYVTKEELYQ-----------NLTREQAEFCMSKMKPYAETSSGRSDQVAL 2387 (2399)
T ss_pred HHHHhcccccccchHHHHHHHHHhhc-CCccccHHHHHh-----------cCCHHHHHHHHHHhhhhcccccCCCccccc
Confidence 99754332 33455799999999999 889999999875 457777777776665666652 34579
Q ss_pred CHHHHHHHHH
Q 028131 169 DPEEWKEFVK 178 (213)
Q Consensus 169 s~~ef~~~l~ 178 (213)
.|.+|++.+.
T Consensus 2388 ~y~dfv~sl~ 2397 (2399)
T KOG0040|consen 2388 DYKDFVNSLF 2397 (2399)
T ss_pred cHHHHHHHHh
Confidence 9999998764
No 30
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=98.97 E-value=4.5e-09 Score=70.94 Aligned_cols=72 Identities=22% Similarity=0.382 Sum_probs=57.7
Q ss_pred HHHHHHHHHhcC-CCCCCc-ccHHHHHHHHHH-HhhhcCCCCCHHHHHHHHHHHHHhhCCCCCCCcCHHHHHHHHHhCh
Q 028131 106 EDKIAFAFRLYD-LRQTGF-IEREELKEMVLA-LLHESDLILSDDVIETIVDKSFSDADTNGDGKIDPEEWKEFVKKNP 181 (213)
Q Consensus 106 ~~~~~~~F~~~D-~d~~G~-I~~~El~~~l~~-~~~~~~~~~~~~~~~~~~~~~f~~~d~d~dg~Is~~ef~~~l~~~~ 181 (213)
.+.++.+|+.|| .+++|+ |+..||+.++.. +-...+..+++++++.++ ..+|.|++|.|+|++|+.++....
T Consensus 8 ~~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~----~~~D~d~~G~I~f~eF~~l~~~~~ 82 (92)
T cd05025 8 METLINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIM----KELDENGDGEVDFQEFVVLVAALT 82 (92)
T ss_pred HHHHHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHH----HHHCCCCCCcCcHHHHHHHHHHHH
Confidence 467999999997 999995 999999999976 411123356777777666 789999999999999999887644
No 31
>KOG2562 consensus Protein phosphatase 2 regulatory subunit [RNA processing and modification]
Probab=98.91 E-value=1.5e-08 Score=84.57 Aligned_cols=142 Identities=21% Similarity=0.285 Sum_probs=111.0
Q ss_pred CCCHHHHHHHHHHHHHhhcCCCCCCCcCHHHHHHHHhcccCcchHHHHHHHHHhcC----CCCCcccHHHHHHHHhhhCC
Q 028131 26 PFTVCEVEALYELFKKLSSSIFDDGIIHKEEFQLALFRNKNKKNLFADRIFDLFDL----KRNGVIEFGEFVRSLGVFHP 101 (213)
Q Consensus 26 ~ls~~~i~~l~~~F~~~d~~~~~~G~l~~~e~~~~l~~~~~~~~~~~~~~~~~~d~----~~~~~i~~~ef~~~~~~~~~ 101 (213)
-||-+.-..++-.|..+|++ ++|.|+.+++...-.. ......+.++|..+-+ ..+|.++|.+|+.++-.+.
T Consensus 271 ~FS~e~f~viy~kFweLD~D--hd~lidk~~L~ry~d~--tlt~~ivdRIFs~v~r~~~~~~eGrmdykdFv~FilA~e- 345 (493)
T KOG2562|consen 271 YFSYEHFYVIYCKFWELDTD--HDGLIDKEDLKRYGDH--TLTERIVDRIFSQVPRGFTVKVEGRMDYKDFVDFILAEE- 345 (493)
T ss_pred heeHHHHHHHHHHHhhhccc--cccccCHHHHHHHhcc--chhhHHHHHHHhhccccceeeecCcccHHHHHHHHHHhc-
Confidence 36666667777889999999 9999999999865322 2346678999984333 3578899999999987776
Q ss_pred CCChHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHhhh----cCCCCCHHHHHHHHHHHHHhhCCCCCCCcCHHHHHH
Q 028131 102 HALVEDKIAFAFRLYDLRQTGFIEREELKEMVLALLHE----SDLILSDDVIETIVDKSFSDADTNGDGKIDPEEWKE 175 (213)
Q Consensus 102 ~~~~~~~~~~~F~~~D~d~~G~I~~~El~~~l~~~~~~----~~~~~~~~~~~~~~~~~f~~~d~d~dg~Is~~ef~~ 175 (213)
......-++..|+.+|.+++|.|+..|++-+.....+- ....++ ++.++.++++...+-..++|+..+|..
T Consensus 346 ~k~t~~SleYwFrclDld~~G~Lt~~el~~fyeeq~~rm~~~~~e~l~---fed~l~qi~DMvkP~~~~kItLqDlk~ 420 (493)
T KOG2562|consen 346 DKDTPASLEYWFRCLDLDGDGILTLNELRYFYEEQLQRMECMGQEALP---FEDALCQIRDMVKPEDENKITLQDLKG 420 (493)
T ss_pred cCCCccchhhheeeeeccCCCcccHHHHHHHHHHHHHHHHhcCCCccc---HHHHHHHHHHHhCccCCCceeHHHHhh
Confidence 56677889999999999999999999999887765432 123333 455677777888888899999999998
No 32
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=98.90 E-value=7.1e-09 Score=65.39 Aligned_cols=62 Identities=29% Similarity=0.359 Sum_probs=52.7
Q ss_pred HHHHHhcCCCCCCcccHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhCCCCCCCcCHHHHHHHHHhCh
Q 028131 110 AFAFRLYDLRQTGFIEREELKEMVLALLHESDLILSDDVIETIVDKSFSDADTNGDGKIDPEEWKEFVKKNP 181 (213)
Q Consensus 110 ~~~F~~~D~d~~G~I~~~El~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~d~dg~Is~~ef~~~l~~~~ 181 (213)
+.+|+.+|.+++|.|+.+|+..++... | .+.+++..++ ..+|.+++|.|++++|+.++...+
T Consensus 2 ~~~F~~~D~~~~G~i~~~el~~~l~~~----g--~~~~~~~~i~----~~~d~~~~g~i~~~ef~~~~~~~~ 63 (67)
T cd00052 2 DQIFRSLDPDGDGLISGDEARPFLGKS----G--LPRSVLAQIW----DLADTDKDGKLDKEEFAIAMHLIA 63 (67)
T ss_pred hHHHHHhCCCCCCcCcHHHHHHHHHHc----C--CCHHHHHHHH----HHhcCCCCCcCCHHHHHHHHHHHH
Confidence 578999999999999999999999876 5 3666665555 799999999999999999887544
No 33
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=98.85 E-value=1.5e-08 Score=67.71 Aligned_cols=70 Identities=26% Similarity=0.371 Sum_probs=55.4
Q ss_pred HHHHHHHHhcCC--CCCCcccHHHHHHHHHHHhhh-cCCCCCHHHHHHHHHHHHHhhCCCCCCCcCHHHHHHHHHhC
Q 028131 107 DKIAFAFRLYDL--RQTGFIEREELKEMVLALLHE-SDLILSDDVIETIVDKSFSDADTNGDGKIDPEEWKEFVKKN 180 (213)
Q Consensus 107 ~~~~~~F~~~D~--d~~G~I~~~El~~~l~~~~~~-~~~~~~~~~~~~~~~~~f~~~d~d~dg~Is~~ef~~~l~~~ 180 (213)
..+..+|..||. +++|.|+.+||..++...+-. .+..++.++++.++ ..+|.+++|.|+|++|+.++...
T Consensus 8 ~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~----~~~d~~~~g~I~f~eF~~~~~~~ 80 (88)
T cd00213 8 ETIIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKNQKDPEAVDKIM----KDLDVNKDGKVDFQEFLVLIGKL 80 (88)
T ss_pred HHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHH----HHhccCCCCcCcHHHHHHHHHHH
Confidence 568899999999 899999999999999763200 11234567766666 78999999999999999988754
No 34
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=98.85 E-value=1.5e-08 Score=70.93 Aligned_cols=62 Identities=26% Similarity=0.426 Sum_probs=51.4
Q ss_pred hHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhCCCCCCCcCHHHHHHHHH
Q 028131 105 VEDKIAFAFRLYDLRQTGFIEREELKEMVLALLHESDLILSDDVIETIVDKSFSDADTNGDGKIDPEEWKEFVK 178 (213)
Q Consensus 105 ~~~~~~~~F~~~D~d~~G~I~~~El~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~d~dg~Is~~ef~~~l~ 178 (213)
....+..+|..+|.|++|+|+.+||..+. + + .. +..+..+|..+|.|+||.||++||..++.
T Consensus 46 ~~~~l~w~F~~lD~d~DG~Ls~~EL~~~~--l----~--~~----e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl~ 107 (116)
T cd00252 46 CKDPVGWMFNQLDGNYDGKLSHHELAPIR--L----D--PN----EHCIKPFFESCDLDKDGSISLDEWCYCFI 107 (116)
T ss_pred HHHHHHHHHHHHCCCCCCcCCHHHHHHHH--c----c--ch----HHHHHHHHHHHCCCCCCCCCHHHHHHHHh
Confidence 45779999999999999999999999875 2 1 22 23345666899999999999999999993
No 35
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=98.84 E-value=2.2e-08 Score=68.10 Aligned_cols=70 Identities=23% Similarity=0.322 Sum_probs=58.5
Q ss_pred HHHHHHHHHhcCCCCCCcccHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhCCCCCCCcCHHHHHHHHHhChhhHh
Q 028131 106 EDKIAFAFRLYDLRQTGFIEREELKEMVLALLHESDLILSDDVIETIVDKSFSDADTNGDGKIDPEEWKEFVKKNPSLIK 185 (213)
Q Consensus 106 ~~~~~~~F~~~D~d~~G~I~~~El~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~d~dg~Is~~ef~~~l~~~~~~~~ 185 (213)
...+..+|+.+|.+++|.|+.+||+.++... + ++.+++..++ ..+|.+++|.|++++|+.++....-...
T Consensus 9 ~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~----~--~~~~ev~~i~----~~~d~~~~g~I~~~eF~~~~~~~~~~~~ 78 (96)
T smart00027 9 KAKYEQIFRSLDKNQDGTVTGAQAKPILLKS----G--LPQTLLAKIW----NLADIDNDGELDKDEFALAMHLIYRKLN 78 (96)
T ss_pred HHHHHHHHHHhCCCCCCeEeHHHHHHHHHHc----C--CCHHHHHHHH----HHhcCCCCCCcCHHHHHHHHHHHHHHHc
Confidence 4579999999999999999999999999875 4 6777766665 7899999999999999999876554433
No 36
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=98.84 E-value=3.1e-08 Score=67.34 Aligned_cols=71 Identities=15% Similarity=0.346 Sum_probs=57.7
Q ss_pred CCCCHHHHHHHHHHHHHhhcCCCCCCCcCHHHHHHHHhcccCcchHHHHHHHHHhcCCCCCcccHHHHHHHHhh
Q 028131 25 TPFTVCEVEALYELFKKLSSSIFDDGIIHKEEFQLALFRNKNKKNLFADRIFDLFDLKRNGVIEFGEFVRSLGV 98 (213)
Q Consensus 25 ~~ls~~~i~~l~~~F~~~d~~~~~~G~l~~~e~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~ 98 (213)
+.+|.+++..+..+|..+|.+ ++|.|+.+++..++...+ .....+..++..+|.+++|.|++++|+.++..
T Consensus 2 ~~ls~~~~~~l~~~F~~~D~d--~~G~Is~~el~~~l~~~~-~~~~ev~~i~~~~d~~~~g~I~~~eF~~~~~~ 72 (96)
T smart00027 2 WAISPEDKAKYEQIFRSLDKN--QDGTVTGAQAKPILLKSG-LPQTLLAKIWNLADIDNDGELDKDEFALAMHL 72 (96)
T ss_pred CCCCHHHHHHHHHHHHHhCCC--CCCeEeHHHHHHHHHHcC-CCHHHHHHHHHHhcCCCCCCcCHHHHHHHHHH
Confidence 467889999999999999998 999999999998886653 34556778888888888888888888877653
No 37
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=98.81 E-value=1.6e-08 Score=63.69 Aligned_cols=59 Identities=39% Similarity=0.564 Sum_probs=33.8
Q ss_pred HHHHHHHhhcCCCCCCCcCHHHHHHHHhcccCc-----chHHHHHHHHHhcCCCCCcccHHHHHHH
Q 028131 35 LYELFKKLSSSIFDDGIIHKEEFQLALFRNKNK-----KNLFADRIFDLFDLKRNGVIEFGEFVRS 95 (213)
Q Consensus 35 l~~~F~~~d~~~~~~G~l~~~e~~~~l~~~~~~-----~~~~~~~~~~~~d~~~~~~i~~~ef~~~ 95 (213)
+..+|+.+|.+ ++|+|+.++|..++...... ....+..+|..+|.+++|.|++.||+.+
T Consensus 2 l~~~F~~~D~d--~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~ 65 (66)
T PF13499_consen 2 LKEAFKKFDKD--GDGYISKEELRRALKHLGRDMSDEESDEMIDQIFREFDTDGDGRISFDEFLNF 65 (66)
T ss_dssp HHHHHHHHSTT--SSSEEEHHHHHHHHHHTTSHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHH
T ss_pred HHHHHHHHcCC--ccCCCCHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhcc
Confidence 45666777776 77777777777666554421 1223344455555555555555555543
No 38
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=98.80 E-value=1.7e-08 Score=60.98 Aligned_cols=52 Identities=29% Similarity=0.570 Sum_probs=46.4
Q ss_pred CCCcccHHHHHHHHHHHhhhcCCC-CCHHHHHHHHHHHHHhhCCCCCCCcCHHHHHHHHHh
Q 028131 120 QTGFIEREELKEMVLALLHESDLI-LSDDVIETIVDKSFSDADTNGDGKIDPEEWKEFVKK 179 (213)
Q Consensus 120 ~~G~I~~~El~~~l~~~~~~~~~~-~~~~~~~~~~~~~f~~~d~d~dg~Is~~ef~~~l~~ 179 (213)
.+|.|+.++|+.++..+ |.. ++++++..++ ..+|.|++|.|+|+||+.++..
T Consensus 1 ~~G~i~~~~~~~~l~~~----g~~~~s~~e~~~l~----~~~D~~~~G~I~~~EF~~~~~~ 53 (54)
T PF13833_consen 1 KDGKITREEFRRALSKL----GIKDLSEEEVDRLF----REFDTDGDGYISFDEFISMMQR 53 (54)
T ss_dssp SSSEEEHHHHHHHHHHT----TSSSSCHHHHHHHH----HHHTTSSSSSEEHHHHHHHHHH
T ss_pred CcCEECHHHHHHHHHHh----CCCCCCHHHHHHHH----HhcccCCCCCCCHHHHHHHHHh
Confidence 37999999999999777 888 9999987766 8999999999999999998863
No 39
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=98.80 E-value=1.3e-07 Score=68.42 Aligned_cols=101 Identities=20% Similarity=0.240 Sum_probs=84.3
Q ss_pred HHHHHHHHhcCCCCCcccHHHHHHHHhhhCCCCChHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHhhhcCCCCCHHHHH
Q 028131 71 FADRIFDLFDLKRNGVIEFGEFVRSLGVFHPHALVEDKIAFAFRLYDLRQTGFIEREELKEMVLALLHESDLILSDDVIE 150 (213)
Q Consensus 71 ~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~F~~~D~d~~G~I~~~El~~~l~~~~~~~~~~~~~~~~~ 150 (213)
.+...|..++.+++|.|++.++-..+..+. -....+++..+..-+|++|.|.|++++|+.++...+ +..-+.+++.
T Consensus 34 ~i~e~f~lfd~~~~g~iD~~EL~vAmralG-FE~~k~ei~kll~d~dk~~~g~i~fe~f~~~mt~k~---~e~dt~eEi~ 109 (172)
T KOG0028|consen 34 EIKEAFELFDPDMAGKIDVEELKVAMRALG-FEPKKEEILKLLADVDKEGSGKITFEDFRRVMTVKL---GERDTKEEIK 109 (172)
T ss_pred hHHHHHHhhccCCCCcccHHHHHHHHHHcC-CCcchHHHHHHHHhhhhccCceechHHHHHHHHHHH---hccCcHHHHH
Confidence 467889999999999999999965554444 356678899999999999999999999999987554 6666777765
Q ss_pred HHHHHHHHhhCCCCCCCcCHHHHHHHHHh
Q 028131 151 TIVDKSFSDADTNGDGKIDPEEWKEFVKK 179 (213)
Q Consensus 151 ~~~~~~f~~~d~d~dg~Is~~ef~~~l~~ 179 (213)
..+ ..+|.|.+|.||+.+|..+...
T Consensus 110 ~af----rl~D~D~~Gkis~~~lkrvake 134 (172)
T KOG0028|consen 110 KAF----RLFDDDKTGKISQRNLKRVAKE 134 (172)
T ss_pred HHH----HcccccCCCCcCHHHHHHHHHH
Confidence 555 8999999999999999998874
No 40
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=98.79 E-value=5.2e-08 Score=65.17 Aligned_cols=70 Identities=14% Similarity=0.244 Sum_probs=55.0
Q ss_pred HHHHHHHHh-cCCCCCC-cccHHHHHHHHHHHhhh-cCCCCCHHHHHHHHHHHHHhhCCCCCCCcCHHHHHHHHHhC
Q 028131 107 DKIAFAFRL-YDLRQTG-FIEREELKEMVLALLHE-SDLILSDDVIETIVDKSFSDADTNGDGKIDPEEWKEFVKKN 180 (213)
Q Consensus 107 ~~~~~~F~~-~D~d~~G-~I~~~El~~~l~~~~~~-~~~~~~~~~~~~~~~~~f~~~d~d~dg~Is~~ef~~~l~~~ 180 (213)
..+..+|+. +|.+|+| +|+.+||+.++..-+.. .+...++.+++.++ ..+|.|+||.|+|+||+.++...
T Consensus 9 ~~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll----~~~D~d~DG~I~f~EF~~l~~~l 81 (89)
T cd05023 9 ESLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMM----KKLDLNSDGQLDFQEFLNLIGGL 81 (89)
T ss_pred HHHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHH----HHcCCCCCCcCcHHHHHHHHHHH
Confidence 458889999 7788876 99999999999865211 12345567777666 79999999999999999988653
No 41
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=98.79 E-value=3.4e-08 Score=60.51 Aligned_cols=61 Identities=39% Similarity=0.627 Sum_probs=53.8
Q ss_pred HHHHHHhcCCCCCCcccHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhCCCCCCCcCHHHHHHHH
Q 028131 109 IAFAFRLYDLRQTGFIEREELKEMVLALLHESDLILSDDVIETIVDKSFSDADTNGDGKIDPEEWKEFV 177 (213)
Q Consensus 109 ~~~~F~~~D~d~~G~I~~~El~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~d~dg~Is~~ef~~~l 177 (213)
+..+|..+|.+++|.|+.+|+..++..+ +...+.+.+..++ ..++.+++|.|++++|..++
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~----~~~~~~~~~~~~~----~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKSL----GEGLSEEEIDEMI----REVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHh----CCCCCHHHHHHHH----HHhCCCCCCeEeHHHHHHHh
Confidence 5788999999999999999999999988 8888887766555 78999999999999998875
No 42
>PLN02964 phosphatidylserine decarboxylase
Probab=98.79 E-value=1e-07 Score=84.48 Aligned_cols=99 Identities=21% Similarity=0.318 Sum_probs=76.7
Q ss_pred HHHHHHHHHhcCCCCCcccHHHHHHHHhhhCCCCChHH---HHHHHHHhcCCCCCCcccHHHHHHHHHHHhhhcCCCCCH
Q 028131 70 LFADRIFDLFDLKRNGVIEFGEFVRSLGVFHPHALVED---KIAFAFRLYDLRQTGFIEREELKEMVLALLHESDLILSD 146 (213)
Q Consensus 70 ~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~---~~~~~F~~~D~d~~G~I~~~El~~~l~~~~~~~~~~~~~ 146 (213)
..+.+.|..+|.+++|.+ +...+..+.. ....++ .+..+|+.+|.+++|.|+.+||..++..+ +...++
T Consensus 143 ~elkeaF~lfD~dgdG~i-Lg~ilrslG~---~~pte~e~~fi~~mf~~~D~DgdG~IdfdEFl~lL~~l----g~~~se 214 (644)
T PLN02964 143 ESACESFDLLDPSSSNKV-VGSIFVSCSI---EDPVETERSFARRILAIVDYDEDGQLSFSEFSDLIKAF----GNLVAA 214 (644)
T ss_pred HHHHHHHHHHCCCCCCcC-HHHHHHHhCC---CCCCHHHHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHh----ccCCCH
Confidence 345778999999999987 3333333321 123333 38999999999999999999999999877 766777
Q ss_pred HHHHHHHHHHHHhhCCCCCCCcCHHHHHHHHHhC
Q 028131 147 DVIETIVDKSFSDADTNGDGKIDPEEWKEFVKKN 180 (213)
Q Consensus 147 ~~~~~~~~~~f~~~d~d~dg~Is~~ef~~~l~~~ 180 (213)
+++ ..+|..+|.|++|.|+++||..++...
T Consensus 215 EEL----~eaFk~fDkDgdG~Is~dEL~~vL~~~ 244 (644)
T PLN02964 215 NKK----EELFKAADLNGDGVVTIDELAALLALQ 244 (644)
T ss_pred HHH----HHHHHHhCCCCCCcCCHHHHHHHHHhc
Confidence 665 455589999999999999999999874
No 43
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=98.76 E-value=6.5e-08 Score=64.60 Aligned_cols=70 Identities=21% Similarity=0.261 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHHhhc-CCCCCCCcCHHHHHHHHhc-ccC-cch-HHHHHHHHHhcCCCCCcccHHHHHHHHhhhC
Q 028131 29 VCEVEALYELFKKLSS-SIFDDGIIHKEEFQLALFR-NKN-KKN-LFADRIFDLFDLKRNGVIEFGEFVRSLGVFH 100 (213)
Q Consensus 29 ~~~i~~l~~~F~~~d~-~~~~~G~l~~~e~~~~l~~-~~~-~~~-~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~ 100 (213)
+..+..+..+|..+|. + ++|+|+..+|+.++.. ++. ... ..+..++..+|.|++|.|+|+||..++..+.
T Consensus 4 E~ai~~l~~~F~~fd~~~--~~g~i~~~ELk~ll~~elg~~ls~~~~v~~mi~~~D~d~DG~I~F~EF~~l~~~l~ 77 (89)
T cd05022 4 EKAIETLVSNFHKASVKG--GKESLTASEFQELLTQQLPHLLKDVEGLEEKMKNLDVNQDSKLSFEEFWELIGELA 77 (89)
T ss_pred HHHHHHHHHHHHHHhCCC--CCCeECHHHHHHHHHHHhhhhccCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHH
Confidence 4567788899999998 8 9999999999988866 443 233 6789999999999999999999998886554
No 44
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=98.74 E-value=1e-07 Score=72.29 Aligned_cols=97 Identities=24% Similarity=0.258 Sum_probs=76.9
Q ss_pred HHHHHhhcCCCCCCC-cCHHHHHHHHhc--ccCcchHHHHHHHHHhcCCCCCcccHHHHHHHHhhhCCCCCh------HH
Q 028131 37 ELFKKLSSSIFDDGI-IHKEEFQLALFR--NKNKKNLFADRIFDLFDLKRNGVIEFGEFVRSLGVFHPHALV------ED 107 (213)
Q Consensus 37 ~~F~~~d~~~~~~G~-l~~~e~~~~l~~--~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~------~~ 107 (213)
++++.++.+ ++|. |+..+|.+.+.. +.......+.-.|+.+|.+++|.|+.+++..++..+...... .+
T Consensus 70 rI~~~f~~~--~~~~~v~F~~Fv~~ls~f~~~~~~~~Kl~faF~vYD~~~~G~I~reel~~iv~~~~~~~~~~~~e~~~~ 147 (187)
T KOG0034|consen 70 RIIDRFDTD--GNGDPVDFEEFVRLLSVFSPKASKREKLRFAFRVYDLDGDGFISREELKQILRMMVGENDDMSDEQLED 147 (187)
T ss_pred HHHHHHhcc--CCCCccCHHHHHHHHhhhcCCccHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHccCCcchHHHHHH
Confidence 456666666 7777 999999988733 222333356779999999999999999999999877753333 34
Q ss_pred HHHHHHHhcCCCCCCcccHHHHHHHHHH
Q 028131 108 KIAFAFRLYDLRQTGFIEREELKEMVLA 135 (213)
Q Consensus 108 ~~~~~F~~~D~d~~G~I~~~El~~~l~~ 135 (213)
-+...|..+|.|+||.|+.+|++.++..
T Consensus 148 i~d~t~~e~D~d~DG~IsfeEf~~~v~~ 175 (187)
T KOG0034|consen 148 IVDKTFEEADTDGDGKISFEEFCKVVEK 175 (187)
T ss_pred HHHHHHHHhCCCCCCcCcHHHHHHHHHc
Confidence 5789999999999999999999999854
No 45
>PF14658 EF-hand_9: EF-hand domain
Probab=98.67 E-value=1.2e-07 Score=58.91 Aligned_cols=61 Identities=16% Similarity=0.372 Sum_probs=55.4
Q ss_pred HHHHhcCCCCCCcccHHHHHHHHHHHhhhcCC-CCCHHHHHHHHHHHHHhhCCCCC-CCcCHHHHHHHHHh
Q 028131 111 FAFRLYDLRQTGFIEREELKEMVLALLHESDL-ILSDDVIETIVDKSFSDADTNGD-GKIDPEEWKEFVKK 179 (213)
Q Consensus 111 ~~F~~~D~d~~G~I~~~El~~~l~~~~~~~~~-~~~~~~~~~~~~~~f~~~d~d~d-g~Is~~ef~~~l~~ 179 (213)
.+|.+||.++.|.|...+|..+|+++ +. .+++.+++.+. ..+|+++. |.|+++.|+..|+.
T Consensus 2 ~~F~~fD~~~tG~V~v~~l~~~Lra~----~~~~p~e~~Lq~l~----~elDP~g~~~~v~~d~F~~iM~~ 64 (66)
T PF14658_consen 2 TAFDAFDTQKTGRVPVSDLITYLRAV----TGRSPEESELQDLI----NELDPEGRDGSVNFDTFLAIMRD 64 (66)
T ss_pred cchhhcCCcCCceEeHHHHHHHHHHH----cCCCCcHHHHHHHH----HHhCCCCCCceEeHHHHHHHHHH
Confidence 47999999999999999999999998 66 88888888887 79999998 99999999999874
No 46
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=98.67 E-value=2.3e-07 Score=62.70 Aligned_cols=70 Identities=23% Similarity=0.434 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHHhh-cCCCCCC-CcCHHHHHHHHhcc------cCcchHHHHHHHHHhcCCCCCcccHHHHHHHHhhhC
Q 028131 29 VCEVEALYELFKKLS-SSIFDDG-IIHKEEFQLALFRN------KNKKNLFADRIFDLFDLKRNGVIEFGEFVRSLGVFH 100 (213)
Q Consensus 29 ~~~i~~l~~~F~~~d-~~~~~~G-~l~~~e~~~~l~~~------~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~ 100 (213)
+..+..+..+|..+| .+ ++| +|+..+|+.++... .......+..++..+|.+++|.|+|+||+.++..+.
T Consensus 6 e~a~~~~~~~F~~~dd~d--gdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~~~l~ 83 (93)
T cd05026 6 EGAMDTLIRIFHNYSGKE--GDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDSNKDNEVDFNEFVVLVAALT 83 (93)
T ss_pred HHHHHHHHHHHHHHHccC--CCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHH
Confidence 455677788888888 56 787 59999999888441 122455688999999999999999999998886554
No 47
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=98.65 E-value=2.1e-07 Score=62.11 Aligned_cols=69 Identities=20% Similarity=0.361 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHHhh-cCCCCCC-CcCHHHHHHHHhc-----ccC-cchHHHHHHHHHhcCCCCCcccHHHHHHHHhhh
Q 028131 29 VCEVEALYELFKKLS-SSIFDDG-IIHKEEFQLALFR-----NKN-KKNLFADRIFDLFDLKRNGVIEFGEFVRSLGVF 99 (213)
Q Consensus 29 ~~~i~~l~~~F~~~d-~~~~~~G-~l~~~e~~~~l~~-----~~~-~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~ 99 (213)
+.-+..+..+|+.+| .+ ++| +|+..+|+.+|.. .+. ..+..+..+++.+|.+++|.|+|++|+.++...
T Consensus 4 e~~~~~l~~aF~~fD~~d--gdG~~I~~~eL~~ll~~~~~~~lg~~~~~~~v~~~i~~~D~n~dG~v~f~eF~~li~~~ 80 (88)
T cd05027 4 EKAMVALIDVFHQYSGRE--GDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSDGDGECDFQEFMAFVAMV 80 (88)
T ss_pred HHHHHHHHHHHHHhcccC--CCcCEECHHHHHHHHHHHhHHHhcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 456778889999997 68 899 5999999988876 443 345568999999999999999999998887644
No 48
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=98.57 E-value=1.7e-06 Score=71.71 Aligned_cols=134 Identities=26% Similarity=0.307 Sum_probs=105.6
Q ss_pred HHHHHHHHHHHhhcCCCCCCCcCHHHHHHHHhcccCcchHHHHHHHHHhcCCCCCcccHHHHHHHHhhhCCCCChHHHHH
Q 028131 31 EVEALYELFKKLSSSIFDDGIIHKEEFQLALFRNKNKKNLFADRIFDLFDLKRNGVIEFGEFVRSLGVFHPHALVEDKIA 110 (213)
Q Consensus 31 ~i~~l~~~F~~~d~~~~~~G~l~~~e~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~ 110 (213)
.-......|...|.+ ++|.+++++|++.+ ...+..+-++|...|.+.+|.|+.+|.-..+..+. .....++..
T Consensus 49 ~~~~~~~l~~~~d~~--~dg~vDy~eF~~Y~----~~~E~~l~~~F~~iD~~hdG~i~~~Ei~~~l~~~g-i~l~de~~~ 121 (463)
T KOG0036|consen 49 NYEAAKMLFSAMDAN--RDGRVDYSEFKRYL----DNKELELYRIFQSIDLEHDGKIDPNEIWRYLKDLG-IQLSDEKAA 121 (463)
T ss_pred chHHHHHHHHhcccC--cCCcccHHHHHHHH----HHhHHHHHHHHhhhccccCCccCHHHHHHHHHHhC-CccCHHHHH
Confidence 344567789999999 99999999999987 34456678999999999999999999999998777 567889999
Q ss_pred HHHHhcCCCCCCcccHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHH--hhCCCCCCCcCHHHHHHHHHhC
Q 028131 111 FAFRLYDLRQTGFIEREELKEMVLALLHESDLILSDDVIETIVDKSFS--DADTNGDGKIDPEEWKEFVKKN 180 (213)
Q Consensus 111 ~~F~~~D~d~~G~I~~~El~~~l~~~~~~~~~~~~~~~~~~~~~~~f~--~~d~d~dg~Is~~ef~~~l~~~ 180 (213)
.+|+..|++|++.|+.+|+++++.- .+.+.+..+....=. .+|.+.+..|. ++|.......
T Consensus 122 k~~e~~d~~g~~~I~~~e~rd~~ll--------~p~s~i~di~~~W~h~~~idigE~~~iP-dg~s~~e~~~ 184 (463)
T KOG0036|consen 122 KFFEHMDKDGKATIDLEEWRDHLLL--------YPESDLEDIYDFWRHVLLIDIGEDAVLP-DGDSKLENDS 184 (463)
T ss_pred HHHHHhccCCCeeeccHHHHhhhhc--------CChhHHHHHHHhhhhheEEEccccccCC-cchHHHHhcc
Confidence 9999999999999999999998732 225555555432212 35777788888 7777665543
No 49
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=98.55 E-value=5.8e-07 Score=59.97 Aligned_cols=68 Identities=26% Similarity=0.452 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHHhhc--CCCCCCCcCHHHHHHHHhc-ccC-----cchHHHHHHHHHhcCCCCCcccHHHHHHHHhh
Q 028131 29 VCEVEALYELFKKLSS--SIFDDGIIHKEEFQLALFR-NKN-----KKNLFADRIFDLFDLKRNGVIEFGEFVRSLGV 98 (213)
Q Consensus 29 ~~~i~~l~~~F~~~d~--~~~~~G~l~~~e~~~~l~~-~~~-----~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~ 98 (213)
++++..+..+|..+|. + ++|.|+.++|..++.. .+. .....+..++..+|.+++|.|+|++|+.++..
T Consensus 4 ~~~~~~l~~~F~~~D~~~~--~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~~~ 79 (88)
T cd00213 4 EKAIETIIDVFHKYSGKEG--DKDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDLDVNKDGKVDFQEFLVLIGK 79 (88)
T ss_pred HHHHHHHHHHHHHHhhccC--CCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHHHH
Confidence 5678888899999999 8 9999999999988754 221 13567888999999999999999999888754
No 50
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=98.55 E-value=4.1e-07 Score=60.77 Aligned_cols=67 Identities=31% Similarity=0.462 Sum_probs=53.3
Q ss_pred HHHHHHHHhcCCC--CCCcccHHHHHHHHHHHhhhcCCCCC----HHHHHHHHHHHHHhhCCCCCCCcCHHHHHHHHHhC
Q 028131 107 DKIAFAFRLYDLR--QTGFIEREELKEMVLALLHESDLILS----DDVIETIVDKSFSDADTNGDGKIDPEEWKEFVKKN 180 (213)
Q Consensus 107 ~~~~~~F~~~D~d--~~G~I~~~El~~~l~~~~~~~~~~~~----~~~~~~~~~~~f~~~d~d~dg~Is~~ef~~~l~~~ 180 (213)
..+...|..|+.. ++|.|+.+||+.++...+ +..++ +++++.++ ..+|.+++|.|+|++|+.++...
T Consensus 8 ~~~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~---g~~~t~~~~~~~v~~i~----~~~D~d~dG~I~f~eF~~~~~~~ 80 (88)
T cd05030 8 ETIINVFHQYSVRKGHPDTLYKKEFKQLVEKEL---PNFLKKEKNQKAIDKIF----EDLDTNQDGQLSFEEFLVLVIKV 80 (88)
T ss_pred HHHHHHHHHHhccCCCcccCCHHHHHHHHHHHh---hHhhccCCCHHHHHHHH----HHcCCCCCCcCcHHHHHHHHHHH
Confidence 4577889999865 479999999999997432 44454 66666665 79999999999999999988743
No 51
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=98.51 E-value=7.1e-07 Score=60.13 Aligned_cols=69 Identities=25% Similarity=0.360 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHhh-cCCCCCCC-cCHHHHHHHHhc-cc-----CcchHHHHHHHHHhcCCCCCcccHHHHHHHHhhhC
Q 028131 30 CEVEALYELFKKLS-SSIFDDGI-IHKEEFQLALFR-NK-----NKKNLFADRIFDLFDLKRNGVIEFGEFVRSLGVFH 100 (213)
Q Consensus 30 ~~i~~l~~~F~~~d-~~~~~~G~-l~~~e~~~~l~~-~~-----~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~ 100 (213)
..+..+.++|+.+| .+ ++|+ |+..++..+|.. .+ ..+...+..++..+|.+++|.|+|++|+.++..+.
T Consensus 6 ~~~~~l~~~F~~fDd~d--g~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~D~d~~G~I~f~eF~~l~~~~~ 82 (92)
T cd05025 6 TAMETLINVFHAHSGKE--GDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIMKELDENGDGEVDFQEFVVLVAALT 82 (92)
T ss_pred HHHHHHHHHHHHHhccc--CCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHHH
Confidence 44567788888886 88 9994 999999988854 32 12456678889999998889999999988876443
No 52
>KOG2643 consensus Ca2+ binding protein, contains EF-hand motifs [Inorganic ion transport and metabolism]
Probab=98.51 E-value=8.5e-07 Score=73.84 Aligned_cols=128 Identities=20% Similarity=0.358 Sum_probs=93.9
Q ss_pred HHHHHhhcCCCCCCCcCHHHHHHHHhcccCc----chHHHHHHHHHhcCCCCCcccHHHHHHHHhhhCCCCChHHHHHHH
Q 028131 37 ELFKKLSSSIFDDGIIHKEEFQLALFRNKNK----KNLFADRIFDLFDLKRNGVIEFGEFVRSLGVFHPHALVEDKIAFA 112 (213)
Q Consensus 37 ~~F~~~d~~~~~~G~l~~~e~~~~l~~~~~~----~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~ 112 (213)
--|..+|.. .+|.|+..+|...|...... ......++-+.++.+ +..|+++||.+++..+.. -. .+..|
T Consensus 322 lEF~~~~~~--~~g~Ise~DFA~~lL~~a~~n~~~k~~~lkrvk~kf~~~-~~gISl~Ef~~Ff~Fl~~-l~---dfd~A 394 (489)
T KOG2643|consen 322 LEFERFDKG--DSGAISEVDFAELLLAYAGVNSKKKHKYLKRVKEKFKDD-GKGISLQEFKAFFRFLNN-LN---DFDIA 394 (489)
T ss_pred HHHHHhCcc--cccccCHHHHHHHHHHHcccchHhHHHHHHHHHHhccCC-CCCcCHHHHHHHHHHHhh-hh---HHHHH
Confidence 348889887 78999999999877443322 233456666667654 557999999999876663 22 24444
Q ss_pred HHhcCCCCCCcccHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhCCCCCCCcCHHHHHHHHHh
Q 028131 113 FRLYDLRQTGFIEREELKEMVLALLHESDLILSDDVIETIVDKSFSDADTNGDGKIDPEEWKEFVKK 179 (213)
Q Consensus 113 F~~~D~d~~G~I~~~El~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~d~dg~Is~~ef~~~l~~ 179 (213)
...|-.. .+.|+..+|+++...+. |.++++..++.++ ..+|.|+||.||++||+.++++
T Consensus 395 l~fy~~A-g~~i~~~~f~raa~~vt---GveLSdhVvdvvF----~IFD~N~Dg~LS~~EFl~Vmk~ 453 (489)
T KOG2643|consen 395 LRFYHMA-GASIDEKTFQRAAKVVT---GVELSDHVVDVVF----TIFDENNDGTLSHKEFLAVMKR 453 (489)
T ss_pred HHHHHHc-CCCCCHHHHHHHHHHhc---CcccccceeeeEE----EEEccCCCCcccHHHHHHHHHH
Confidence 4444433 37899999999987663 8999987665554 8999999999999999999975
No 53
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=98.49 E-value=1.3e-06 Score=58.26 Aligned_cols=69 Identities=17% Similarity=0.319 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHHhhc-CCCC-CCCcCHHHHHHHHhc---ccC-cchHHHHHHHHHhcCCCCCcccHHHHHHHHhhh
Q 028131 29 VCEVEALYELFKKLSS-SIFD-DGIIHKEEFQLALFR---NKN-KKNLFADRIFDLFDLKRNGVIEFGEFVRSLGVF 99 (213)
Q Consensus 29 ~~~i~~l~~~F~~~d~-~~~~-~G~l~~~e~~~~l~~---~~~-~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~ 99 (213)
++.+..+...|..+|. + + +|+|+.++|+.++.. .+. .+...+.++++.+|.+++|.|+|++|+.++..+
T Consensus 6 e~~~~~~i~~F~~y~~~~--~~~g~Is~~EL~~~l~~~~~lg~k~t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~~l 80 (88)
T cd05029 6 DQAIGLLVAIFHKYSGRE--GDKNTLSKKELKELIQKELTIGSKLQDAEIAKLMEDLDRNKDQEVNFQEYVTFLGAL 80 (88)
T ss_pred HHHHHHHHHHHHHHHccC--CCCCEECHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHH
Confidence 4556677888888887 4 4 789999999998842 332 356678899999999999999999998887644
No 54
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=98.49 E-value=8.4e-07 Score=55.74 Aligned_cols=58 Identities=24% Similarity=0.423 Sum_probs=39.7
Q ss_pred HHHHHhhcCCCCCCCcCHHHHHHHHhcccCcchHHHHHHHHHhcCCCCCcccHHHHHHHHh
Q 028131 37 ELFKKLSSSIFDDGIIHKEEFQLALFRNKNKKNLFADRIFDLFDLKRNGVIEFGEFVRSLG 97 (213)
Q Consensus 37 ~~F~~~d~~~~~~G~l~~~e~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~ 97 (213)
..|+.+|.+ ++|.|+.+++..++...+. +...+..++..+|.+++|.|++.+|+.++.
T Consensus 3 ~~F~~~D~~--~~G~i~~~el~~~l~~~g~-~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~ 60 (67)
T cd00052 3 QIFRSLDPD--GDGLISGDEARPFLGKSGL-PRSVLAQIWDLADTDKDGKLDKEEFAIAMH 60 (67)
T ss_pred HHHHHhCCC--CCCcCcHHHHHHHHHHcCC-CHHHHHHHHHHhcCCCCCcCCHHHHHHHHH
Confidence 456677777 7777777777777655543 445567777777777777777777776654
No 55
>KOG0751 consensus Mitochondrial aspartate/glutamate carrier protein Aralar/Citrin (contains EF-hand Ca2+-binding domains) [Energy production and conversion]
Probab=98.49 E-value=4.6e-06 Score=70.60 Aligned_cols=149 Identities=15% Similarity=0.253 Sum_probs=105.7
Q ss_pred CCHHHHHHHHHHHHHhhcCCCCCCCcCHHHHHHHHhccc---CcchHHHHHHHHHhcCCCCCcccHHHHHHHHhhhCCCC
Q 028131 27 FTVCEVEALYELFKKLSSSIFDDGIIHKEEFQLALFRNK---NKKNLFADRIFDLFDLKRNGVIEFGEFVRSLGVFHPHA 103 (213)
Q Consensus 27 ls~~~i~~l~~~F~~~d~~~~~~G~l~~~e~~~~l~~~~---~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~ 103 (213)
-.+++++.++-.|...+.+ +..+++.++|.+....+- ...+..+.-+-...|..++|.|+|+||..+-..+|.
T Consensus 30 a~~~eLr~if~~~as~e~~--ge~~mt~edFv~~ylgL~~e~~~n~~~v~Lla~iaD~tKDglisf~eF~afe~~lC~-- 105 (694)
T KOG0751|consen 30 ADPKELRSIFLKYASIEKN--GESYMTPEDFVRRYLGLYNESNFNDKIVRLLASIADQTKDGLISFQEFRAFESVLCA-- 105 (694)
T ss_pred CChHHHHHHHHHHhHHhhc--cccccCHHHHHHHHHhhcccccCChHHHHHHHhhhhhcccccccHHHHHHHHhhccC--
Confidence 3467777888888888888 888999999986542222 222222333444567788999999999999888884
Q ss_pred ChHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHhhhcCC-------------------CCCHHHHH--------HHHHHH
Q 028131 104 LVEDKIAFAFRLYDLRQTGFIEREELKEMVLALLHESDL-------------------ILSDDVIE--------TIVDKS 156 (213)
Q Consensus 104 ~~~~~~~~~F~~~D~d~~G~I~~~El~~~l~~~~~~~~~-------------------~~~~~~~~--------~~~~~~ 156 (213)
++...+.+|+.||+.++|.++.+++.++++...-.... ++.-.++. +-..+.
T Consensus 106 -pDal~~~aFqlFDr~~~~~vs~~~~~~if~~t~l~~~~~f~~d~efI~~~Fg~~~~r~~ny~~f~Q~lh~~~~E~~~qa 184 (694)
T KOG0751|consen 106 -PDALFEVAFQLFDRLGNGEVSFEDVADIFGQTNLHHHIPFNWDSEFIKLHFGDIRKRHLNYAEFTQFLHEFQLEHAEQA 184 (694)
T ss_pred -chHHHHHHHHHhcccCCCceehHHHHHHHhccccccCCCccCCcchHHHHhhhHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence 47789999999999999999999999999865321110 11111111 223566
Q ss_pred HHhhCCCCCCCcCHHHHHHHHHhC
Q 028131 157 FSDADTNGDGKIDPEEWKEFVKKN 180 (213)
Q Consensus 157 f~~~d~d~dg~Is~~ef~~~l~~~ 180 (213)
|...|..+.|.||--+|...+...
T Consensus 185 fr~~d~~~ng~is~Ldfq~imvt~ 208 (694)
T KOG0751|consen 185 FREKDKAKNGFISVLDFQDIMVTI 208 (694)
T ss_pred HHHhcccCCCeeeeechHhhhhhh
Confidence 778888888888888888877653
No 56
>KOG4666 consensus Predicted phosphate acyltransferase, contains PlsC domain [Lipid transport and metabolism]
Probab=98.47 E-value=4.7e-07 Score=72.70 Aligned_cols=126 Identities=21% Similarity=0.291 Sum_probs=97.0
Q ss_pred CCCCcCHHHHHHHHhcccCcchHHHHHHHHHhcCCCCCcccHHHHHHHHhhhCCCCChHHHHHHHHHhcCCCCCCcccHH
Q 028131 48 DDGIIHKEEFQLALFRNKNKKNLFADRIFDLFDLKRNGVIEFGEFVRSLGVFHPHALVEDKIAFAFRLYDLRQTGFIERE 127 (213)
Q Consensus 48 ~~G~l~~~e~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~F~~~D~d~~G~I~~~ 127 (213)
+++.|.-.+|...+ ..........+|..||.+++|.+||.+....++.+|......+.+..+|+.|+.+.||++...
T Consensus 240 kg~~igi~efa~~l---~vpvsd~l~~~f~LFde~~tg~~D~re~v~~lavlc~p~~t~~iiq~afk~f~v~eDg~~ge~ 316 (412)
T KOG4666|consen 240 KGPDIGIVEFAVNL---RVPVSDKLAPTFMLFDEGTTGNGDYRETVKTLAVLCGPPVTPVIIQYAFKRFSVAEDGISGEH 316 (412)
T ss_pred cCCCcceeEeeeee---ecchhhhhhhhhheecCCCCCcccHHHHhhhheeeeCCCCcHHHHHHHHHhcccccccccchH
Confidence 44445544444222 122233458899999999999999999999999999888889999999999999999999999
Q ss_pred HHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhCCCCCCCcCHHHHHHHHHhChhhHh
Q 028131 128 ELKEMVLALLHESDLILSDDVIETIVDKSFSDADTNGDGKIDPEEWKEFVKKNPSLIK 185 (213)
Q Consensus 128 El~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~d~dg~Is~~ef~~~l~~~~~~~~ 185 (213)
+|.-+|+..+ | +.+-.+ --+|...+-..+|+|++.+|.++....|++..
T Consensus 317 ~ls~ilq~~l---g--v~~l~v----~~lf~~i~q~d~~ki~~~~f~~fa~~~p~~a~ 365 (412)
T KOG4666|consen 317 ILSLILQVVL---G--VEVLRV----PVLFPSIEQKDDPKIYASNFRKFAATEPNLAL 365 (412)
T ss_pred HHHHHHHHhc---C--cceeec----cccchhhhcccCcceeHHHHHHHHHhCchhhh
Confidence 9999988763 2 222112 23346667777899999999999999999884
No 57
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.46 E-value=2.1e-07 Score=48.57 Aligned_cols=28 Identities=39% Similarity=0.520 Sum_probs=24.6
Q ss_pred HHHHHHHhcCCCCCCcccHHHHHHHHHH
Q 028131 108 KIAFAFRLYDLRQTGFIEREELKEMVLA 135 (213)
Q Consensus 108 ~~~~~F~~~D~d~~G~I~~~El~~~l~~ 135 (213)
+++.+|+.+|.|++|+|+.+||+.++++
T Consensus 1 E~~~~F~~~D~d~dG~I~~~Ef~~~~~~ 28 (29)
T PF00036_consen 1 ELKEAFREFDKDGDGKIDFEEFKEMMKK 28 (29)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHH
T ss_pred CHHHHHHHHCCCCCCcCCHHHHHHHHHh
Confidence 3678999999999999999999998865
No 58
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.46 E-value=1.4e-06 Score=58.87 Aligned_cols=66 Identities=23% Similarity=0.428 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHhhc-CCCC-CCCcCHHHHHHHHhc-----cc-CcchHHHHHHHHHhcCCCCCcccHHHHHHHHh
Q 028131 30 CEVEALYELFKKLSS-SIFD-DGIIHKEEFQLALFR-----NK-NKKNLFADRIFDLFDLKRNGVIEFGEFVRSLG 97 (213)
Q Consensus 30 ~~i~~l~~~F~~~d~-~~~~-~G~l~~~e~~~~l~~-----~~-~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~ 97 (213)
.....++.+|..+|. + + +|+|+.+++..+|.. .+ ......+..++..+|.+++|.|+|++|+.++.
T Consensus 5 ~~~~~l~~~F~~~D~~d--g~dG~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~~~~D~~~dg~I~f~eF~~l~~ 78 (94)
T cd05031 5 HAMESLILTFHRYAGKD--GDKNTLSRKELKKLMEKELSEFLKNQKDPMAVDKIMKDLDQNRDGKVNFEEFVSLVA 78 (94)
T ss_pred HHHHHHHHHHHHHhccC--CCCCeECHHHHHHHHHHHhHHHhhccccHHHHHHHHHHhCCCCCCcCcHHHHHHHHH
Confidence 345567888888886 6 7 599999999987754 12 23456678888888888888888888887764
No 59
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=98.42 E-value=2.1e-06 Score=61.84 Aligned_cols=69 Identities=32% Similarity=0.617 Sum_probs=49.0
Q ss_pred HHHHHHHHhcCCCCCCcccHHHHHHHHHHHhhhcCCCCCHHHHHHHH-----------------------------HHHH
Q 028131 107 DKIAFAFRLYDLRQTGFIEREELKEMVLALLHESDLILSDDVIETIV-----------------------------DKSF 157 (213)
Q Consensus 107 ~~~~~~F~~~D~d~~G~I~~~El~~~l~~~~~~~~~~~~~~~~~~~~-----------------------------~~~f 157 (213)
++++.+|.++|.|+||.|..++|+.++.++ |...++++++.|+ -.+|
T Consensus 32 qEfKEAF~~mDqnrDG~IdkeDL~d~~aSl----Gk~~~d~elDaM~~Ea~gPINft~FLTmfGekL~gtdpe~~I~~AF 107 (171)
T KOG0031|consen 32 QEFKEAFNLMDQNRDGFIDKEDLRDMLASL----GKIASDEELDAMMKEAPGPINFTVFLTMFGEKLNGTDPEEVILNAF 107 (171)
T ss_pred HHHHHHHHHHhccCCCcccHHHHHHHHHHc----CCCCCHHHHHHHHHhCCCCeeHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 556777777777777777777777777666 6556655555544 3457
Q ss_pred HhhCCCCCCCcCHHHHHHHHHh
Q 028131 158 SDADTNGDGKIDPEEWKEFVKK 179 (213)
Q Consensus 158 ~~~d~d~dg~Is~~ef~~~l~~ 179 (213)
..+|.++.|.|.-+.++.+|..
T Consensus 108 ~~FD~~~~G~I~~d~lre~Ltt 129 (171)
T KOG0031|consen 108 KTFDDEGSGKIDEDYLRELLTT 129 (171)
T ss_pred HhcCccCCCccCHHHHHHHHHH
Confidence 7788888888888888888865
No 60
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=98.41 E-value=2.4e-06 Score=57.15 Aligned_cols=69 Identities=26% Similarity=0.426 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHH-hhcCCCCCC-CcCHHHHHHHHhccc------CcchHHHHHHHHHhcCCCCCcccHHHHHHHHhhh
Q 028131 29 VCEVEALYELFKK-LSSSIFDDG-IIHKEEFQLALFRNK------NKKNLFADRIFDLFDLKRNGVIEFGEFVRSLGVF 99 (213)
Q Consensus 29 ~~~i~~l~~~F~~-~d~~~~~~G-~l~~~e~~~~l~~~~------~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~ 99 (213)
++.+..|..+|.. .|.+ ++| +|+..||..++.... ...+..+..++..+|.|++|.|+|+||+.++..+
T Consensus 5 e~~i~~l~~~F~~y~~~d--g~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~~l 81 (89)
T cd05023 5 ERCIESLIAVFQKYAGKD--GDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLNSDGQLDFQEFLNLIGGL 81 (89)
T ss_pred HHHHHHHHHHHHHHhccC--CCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 4567788888988 6666 655 899999998884431 2234667889999999999999999998887544
No 61
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=98.40 E-value=2.3e-06 Score=52.14 Aligned_cols=60 Identities=30% Similarity=0.403 Sum_probs=39.1
Q ss_pred HHHHHHhcCCCCCcccHHHHHHHHhhhCCCCChHHHHHHHHHhcCCCCCCcccHHHHHHHH
Q 028131 73 DRIFDLFDLKRNGVIEFGEFVRSLGVFHPHALVEDKIAFAFRLYDLRQTGFIEREELKEMV 133 (213)
Q Consensus 73 ~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~F~~~D~d~~G~I~~~El~~~l 133 (213)
..+|..+|.+++|.+++++|..++..+. .....+.+..+|+.+|.+++|.|+.++|..++
T Consensus 3 ~~~f~~~d~~~~g~l~~~e~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 3 REAFRLFDKDGDGTISADELKAALKSLG-EGLSEEEIDEMIREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred HHHHHHhCCCCCCcCcHHHHHHHHHHhC-CCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHh
Confidence 4556666666666777777766665554 34555666667777777777777777776543
No 62
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=98.35 E-value=3.4e-06 Score=59.14 Aligned_cols=63 Identities=17% Similarity=0.296 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCCcCHHHHHHHHhcccCcchHHHHHHHHHhcCCCCCcccHHHHHHHH
Q 028131 29 VCEVEALYELFKKLSSSIFDDGIIHKEEFQLALFRNKNKKNLFADRIFDLFDLKRNGVIEFGEFVRSL 96 (213)
Q Consensus 29 ~~~i~~l~~~F~~~d~~~~~~G~l~~~e~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~ 96 (213)
+.....+...|..+|.| ++|+|+.+|+..+. .......+..++..+|.|++|.||++||..++
T Consensus 44 ~~~~~~l~w~F~~lD~d--~DG~Ls~~EL~~~~---l~~~e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl 106 (116)
T cd00252 44 PMCKDPVGWMFNQLDGN--YDGKLSHHELAPIR---LDPNEHCIKPFFESCDLDKDGSISLDEWCYCF 106 (116)
T ss_pred HHHHHHHHHHHHHHCCC--CCCcCCHHHHHHHH---ccchHHHHHHHHHHHCCCCCCCCCHHHHHHHH
Confidence 34444555566666666 66666666665433 11223334555555555555555555555554
No 63
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=98.35 E-value=4.6e-06 Score=62.74 Aligned_cols=117 Identities=17% Similarity=0.206 Sum_probs=89.8
Q ss_pred CCchHhhhhcCCCCHHHHHHHHHHHHHhhcCCCCCCCcCHHHHHHHHhcccCc-chHHHHHHHHHhcCCCCCcccHHHHH
Q 028131 15 YEEPTVLAAETPFTVCEVEALYELFKKLSSSIFDDGIIHKEEFQLALFRNKNK-KNLFADRIFDLFDLKRNGVIEFGEFV 93 (213)
Q Consensus 15 ~~~~~~l~~~~~ls~~~i~~l~~~F~~~d~~~~~~G~l~~~e~~~~l~~~~~~-~~~~~~~~~~~~d~~~~~~i~~~ef~ 93 (213)
.....-+.....||+++|+.+..+|+.+|.+ .+|+|+..+++.+|-.++.+ +......+...+|-|.+|.++|.+|+
T Consensus 81 ~kv~n~yteF~eFsrkqIk~~~~~Fk~yDe~--rDgfIdl~ELK~mmEKLgapQTHL~lK~mikeVded~dgklSfrefl 158 (244)
T KOG0041|consen 81 LKVFNVYTEFSEFSRKQIKDAESMFKQYDED--RDGFIDLMELKRMMEKLGAPQTHLGLKNMIKEVDEDFDGKLSFREFL 158 (244)
T ss_pred ccccchhhhhhHHHHHHHHHHHHHHHHhccc--ccccccHHHHHHHHHHhCCchhhHHHHHHHHHhhcccccchhHHHHH
Confidence 3445556666689999999999999999999 99999999999999777754 56677899999999999999999999
Q ss_pred HHHhhhCCCCCh-HHHHHHHHHh--cCCCCCCcccHHHHHHHH
Q 028131 94 RSLGVFHPHALV-EDKIAFAFRL--YDLRQTGFIEREELKEMV 133 (213)
Q Consensus 94 ~~~~~~~~~~~~-~~~~~~~F~~--~D~d~~G~I~~~El~~~l 133 (213)
.+...-...... +..+..+=+. .|....|+.....|-++=
T Consensus 159 LIfrkaaagEL~~ds~~~~LAr~~eVDVskeGV~GAknFFeAK 201 (244)
T KOG0041|consen 159 LIFRKAAAGELQEDSGLLRLARLSEVDVSKEGVSGAKNFFEAK 201 (244)
T ss_pred HHHHHHhccccccchHHHHHHHhcccchhhhhhhhHHHHHHHH
Confidence 998655432222 2233333333 788888887777765543
No 64
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=98.33 E-value=2.3e-06 Score=51.53 Aligned_cols=50 Identities=30% Similarity=0.471 Sum_probs=33.4
Q ss_pred CCcccHHHHHHHHhhhCCCC-ChHHHHHHHHHhcCCCCCCcccHHHHHHHHH
Q 028131 84 NGVIEFGEFVRSLGVFHPHA-LVEDKIAFAFRLYDLRQTGFIEREELKEMVL 134 (213)
Q Consensus 84 ~~~i~~~ef~~~~~~~~~~~-~~~~~~~~~F~~~D~d~~G~I~~~El~~~l~ 134 (213)
+|.|+.++|..++..+. .. ..++++..+|..+|.+++|.|+.+||..++.
T Consensus 2 ~G~i~~~~~~~~l~~~g-~~~~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~~ 52 (54)
T PF13833_consen 2 DGKITREEFRRALSKLG-IKDLSEEEVDRLFREFDTDGDGYISFDEFISMMQ 52 (54)
T ss_dssp SSEEEHHHHHHHHHHTT-SSSSCHHHHHHHHHHHTTSSSSSEEHHHHHHHHH
T ss_pred cCEECHHHHHHHHHHhC-CCCCCHHHHHHHHHhcccCCCCCCCHHHHHHHHH
Confidence 46677777777774433 34 5566677777777777777777777777664
No 65
>KOG4251 consensus Calcium binding protein [General function prediction only]
Probab=98.30 E-value=3.4e-06 Score=65.40 Aligned_cols=139 Identities=17% Similarity=0.186 Sum_probs=97.1
Q ss_pred HHHHHHHHHhhcCCCCCCCcCHHHHHHHHhcccC----cchHHHHHHHHHhcCCCCCcccHHHHHHHHhhhCCCCChH--
Q 028131 33 EALYELFKKLSSSIFDDGIIHKEEFQLALFRNKN----KKNLFADRIFDLFDLKRNGVIEFGEFVRSLGVFHPHALVE-- 106 (213)
Q Consensus 33 ~~l~~~F~~~d~~~~~~G~l~~~e~~~~l~~~~~----~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~-- 106 (213)
+.+..+|...|.| .+|+|+..++.+.+....- ..-...+..|+.+|.+++|.|+|+||..-+.........+
T Consensus 101 rklmviFsKvDVN--tDrkisAkEmqrwImektaEHfqeameeSkthFraVDpdgDGhvsWdEykvkFlaskghsekeva 178 (362)
T KOG4251|consen 101 RKLMVIFSKVDVN--TDRKISAKEMQRWIMEKTAEHFQEAMEESKTHFRAVDPDGDGHVSWDEYKVKFLASKGHSEKEVA 178 (362)
T ss_pred HHHHHHHhhcccC--ccccccHHHHHHHHHHHHHHHHHHHHhhhhhheeeeCCCCCCceehhhhhhHHHhhcCcchHHHH
Confidence 4577889999999 9999999999987744321 1111235678999999999999999976654332111000
Q ss_pred -----------HHHHHHHHhcCCCCCC---------cccHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhCCCCCC
Q 028131 107 -----------DKIAFAFRLYDLRQTG---------FIEREELKEMVLALLHESDLILSDDVIETIVDKSFSDADTNGDG 166 (213)
Q Consensus 107 -----------~~~~~~F~~~D~d~~G---------~I~~~El~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~d~dg 166 (213)
++-...|..-+++..| .++.+||..+| ++.-+...+..+++.+....|.|+|.
T Consensus 179 dairlneelkVDeEtqevlenlkdRwyqaDsppadlllteeEflsFL-------HPEhSrgmLrfmVkeivrdlDqdgDk 251 (362)
T KOG4251|consen 179 DAIRLNEELKVDEETQEVLENLKDRWYQADSPPADLLLTEEEFLSFL-------HPEHSRGMLRFMVKEIVRDLDQDGDK 251 (362)
T ss_pred HHhhccCcccccHHHHHHHHhhhhhhccccCchhhhhhhHHHHHHHc-------ChHhhhhhHHHHHHHHHHHhccCCCe
Confidence 1111222222333333 35558888777 88888889999999999999999999
Q ss_pred CcCHHHHHHHHHhC
Q 028131 167 KIDPEEWKEFVKKN 180 (213)
Q Consensus 167 ~Is~~ef~~~l~~~ 180 (213)
.+|..+|+......
T Consensus 252 qlSvpeFislpvGT 265 (362)
T KOG4251|consen 252 QLSVPEFISLPVGT 265 (362)
T ss_pred eecchhhhcCCCcc
Confidence 99999999876443
No 66
>KOG2643 consensus Ca2+ binding protein, contains EF-hand motifs [Inorganic ion transport and metabolism]
Probab=98.30 E-value=4.5e-06 Score=69.63 Aligned_cols=121 Identities=19% Similarity=0.286 Sum_probs=80.8
Q ss_pred CCCCcCHHHHHHHHhcccCcchHHHHHHHHHhcCCCCCcccHHHHHHHHhhhCCCCC--------------hHHHHHH--
Q 028131 48 DDGIIHKEEFQLALFRNKNKKNLFADRIFDLFDLKRNGVIEFGEFVRSLGVFHPHAL--------------VEDKIAF-- 111 (213)
Q Consensus 48 ~~G~l~~~e~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~--------------~~~~~~~-- 111 (213)
.+|.|++.+.. .|..+...+.......|..+|.|++|.|+.+||..++....++.. ....+..
T Consensus 212 ~~GLIsfSdYi-FLlTlLS~p~~~F~IAFKMFD~dgnG~IdkeEF~~v~~li~sQ~~~g~~hrd~~tt~~s~~~~~nsaL 290 (489)
T KOG2643|consen 212 ESGLISFSDYI-FLLTLLSIPERNFRIAFKMFDLDGNGEIDKEEFETVQQLIRSQTSVGVRHRDHFTTGNSFKVEVNSAL 290 (489)
T ss_pred CCCeeeHHHHH-HHHHHHccCcccceeeeeeeecCCCCcccHHHHHHHHHHHHhccccceecccCccccceehhhhhhhH
Confidence 67888888866 443443445555567788888888888888888877654332110 0112222
Q ss_pred HHHhcCCCCCCcccHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhCCCCCCCcCHHHHHHHHHhCh
Q 028131 112 AFRLYDLRQTGFIEREELKEMVLALLHESDLILSDDVIETIVDKSFSDADTNGDGKIDPEEWKEFVKKNP 181 (213)
Q Consensus 112 ~F~~~D~d~~G~I~~~El~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~d~dg~Is~~ef~~~l~~~~ 181 (213)
.-..|..+++|.++.+||..++..+ -.++.+--|..++....|.|+-.+|..++....
T Consensus 291 ~~yFFG~rg~~kLs~deF~~F~e~L------------q~Eil~lEF~~~~~~~~g~Ise~DFA~~lL~~a 348 (489)
T KOG2643|consen 291 LTYFFGKRGNGKLSIDEFLKFQENL------------QEEILELEFERFDKGDSGAISEVDFAELLLAYA 348 (489)
T ss_pred HHHhhccCCCccccHHHHHHHHHHH------------HHHHHHHHHHHhCcccccccCHHHHHHHHHHHc
Confidence 3344678888888888888888776 223344456788888788999999988887644
No 67
>KOG0038 consensus Ca2+-binding kinase interacting protein (KIP) (EF-Hand protein superfamily) [General function prediction only]
Probab=98.24 E-value=5.7e-06 Score=59.15 Aligned_cols=97 Identities=16% Similarity=0.321 Sum_probs=74.7
Q ss_pred HHHHHHHHhhcCCCCCCCcCHHHHHHHHhccc--CcchHHHHHHHHHhcCCCCCcccHHHHHHHHhhhCCCCChHHHHHH
Q 028131 34 ALYELFKKLSSSIFDDGIIHKEEFQLALFRNK--NKKNLFADRIFDLFDLKRNGVIEFGEFVRSLGVFHPHALVEDKIAF 111 (213)
Q Consensus 34 ~l~~~F~~~d~~~~~~G~l~~~e~~~~l~~~~--~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~ 111 (213)
++.++|... +.|-++.++|.+++.-.. ......+.-.|+.+|-|+++.|.-.++...+..+......+++...
T Consensus 75 ri~e~FSeD-----G~GnlsfddFlDmfSV~sE~APrdlK~~YAFkIYDfd~D~~i~~~DL~~~l~~lTr~eLs~eEv~~ 149 (189)
T KOG0038|consen 75 RICEVFSED-----GRGNLSFDDFLDMFSVFSEMAPRDLKAKYAFKIYDFDGDEFIGHDDLEKTLTSLTRDELSDEEVEL 149 (189)
T ss_pred HHHHHhccC-----CCCcccHHHHHHHHHHHHhhChHHhhhhheeEEeecCCCCcccHHHHHHHHHHHhhccCCHHHHHH
Confidence 444555443 999999999999873322 2334455678889999999999999999999888877777766554
Q ss_pred ----HHHhcCCCCCCcccHHHHHHHHHH
Q 028131 112 ----AFRLYDLRQTGFIEREELKEMVLA 135 (213)
Q Consensus 112 ----~F~~~D~d~~G~I~~~El~~~l~~ 135 (213)
+...-|.||||.|+..||.+++..
T Consensus 150 i~ekvieEAD~DgDgkl~~~eFe~~i~r 177 (189)
T KOG0038|consen 150 ICEKVIEEADLDGDGKLSFAEFEHVILR 177 (189)
T ss_pred HHHHHHHHhcCCCCCcccHHHHHHHHHh
Confidence 445569999999999999999864
No 68
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=98.19 E-value=6.3e-06 Score=62.01 Aligned_cols=66 Identities=26% Similarity=0.378 Sum_probs=56.4
Q ss_pred HHHHHHHHHhcCCCCCCcccHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhCCCCCCCcCHHHHHHHHHh
Q 028131 106 EDKIAFAFRLYDLRQTGFIEREELKEMVLALLHESDLILSDDVIETIVDKSFSDADTNGDGKIDPEEWKEFVKK 179 (213)
Q Consensus 106 ~~~~~~~F~~~D~d~~G~I~~~El~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~d~dg~Is~~ef~~~l~~ 179 (213)
-..+..+|+.||.+.||+|+..||+.++.++ |.+-+.--+..+| ...|.|.||+||+-+|.-+++.
T Consensus 98 Ik~~~~~Fk~yDe~rDgfIdl~ELK~mmEKL----gapQTHL~lK~mi----keVded~dgklSfreflLIfrk 163 (244)
T KOG0041|consen 98 IKDAESMFKQYDEDRDGFIDLMELKRMMEKL----GAPQTHLGLKNMI----KEVDEDFDGKLSFREFLLIFRK 163 (244)
T ss_pred HHHHHHHHHHhcccccccccHHHHHHHHHHh----CCchhhHHHHHHH----HHhhcccccchhHHHHHHHHHH
Confidence 3568899999999999999999999999888 7666655565666 7999999999999999988864
No 69
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=98.15 E-value=3.3e-05 Score=54.87 Aligned_cols=105 Identities=17% Similarity=0.169 Sum_probs=84.8
Q ss_pred hHHHHHHHHHhcCCCCCcccHHHHHHHHhhhCCCCChHHHHHHHHHhcCCC--CCCcccHHHHHHHHHHHhhhcCCCCCH
Q 028131 69 NLFADRIFDLFDLKRNGVIEFGEFVRSLGVFHPHALVEDKIAFAFRLYDLR--QTGFIEREELKEMVLALLHESDLILSD 146 (213)
Q Consensus 69 ~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~F~~~D~d--~~G~I~~~El~~~l~~~~~~~~~~~~~ 146 (213)
...+.++|..+|..+++.|++.+.-.++..+. ..+....+..+...++.+ +--.|++++|.-+++.+-.. -..
T Consensus 10 ~~e~ke~F~lfD~~gD~ki~~~q~gdvlRalG-~nPT~aeV~k~l~~~~~~~~~~~rl~FE~fLpm~q~vakn----k~q 84 (152)
T KOG0030|consen 10 MEEFKEAFLLFDRTGDGKISGSQVGDVLRALG-QNPTNAEVLKVLGQPKRREMNVKRLDFEEFLPMYQQVAKN----KDQ 84 (152)
T ss_pred HHHHHHHHHHHhccCcccccHHHHHHHHHHhc-CCCcHHHHHHHHcCcccchhhhhhhhHHHHHHHHHHHHhc----ccc
Confidence 35678999999999999999999999998877 678888999999999887 66789999999999988333 222
Q ss_pred HHHHHHHHHHHHhhCCCCCCCcCHHHHHHHHHh
Q 028131 147 DVIETIVDKSFSDADTNGDGKIDPEEWKEFVKK 179 (213)
Q Consensus 147 ~~~~~~~~~~f~~~d~d~dg~Is~~ef~~~l~~ 179 (213)
-..+..+ +-++.+|..+.|.|.+.+++.++.+
T Consensus 85 ~t~edfv-egLrvFDkeg~G~i~~aeLRhvLtt 116 (152)
T KOG0030|consen 85 GTYEDFV-EGLRVFDKEGNGTIMGAELRHVLTT 116 (152)
T ss_pred CcHHHHH-HHHHhhcccCCcceeHHHHHHHHHH
Confidence 2233333 2237999999999999999999965
No 70
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=98.14 E-value=3.1e-06 Score=44.91 Aligned_cols=29 Identities=34% Similarity=0.695 Sum_probs=25.2
Q ss_pred HHHHHHHhcCCCCCCcccHHHHHHHHH-HH
Q 028131 108 KIAFAFRLYDLRQTGFIEREELKEMVL-AL 136 (213)
Q Consensus 108 ~~~~~F~~~D~d~~G~I~~~El~~~l~-~~ 136 (213)
+++.+|+.+|.|++|+|+.+||+.+++ ++
T Consensus 1 ~l~~~F~~~D~d~dG~I~~~el~~~l~~~l 30 (31)
T PF13405_consen 1 RLREAFKMFDKDGDGFIDFEELRAILRKSL 30 (31)
T ss_dssp HHHHHHHHH-TTSSSEEEHHHHHHHHHHHT
T ss_pred CHHHHHHHHCCCCCCcCcHHHHHHHHHHhc
Confidence 478999999999999999999999997 44
No 71
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=98.12 E-value=2.1e-05 Score=52.44 Aligned_cols=70 Identities=23% Similarity=0.317 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCCcCHHHHHHHHhc-ccC-cc----hHHHHHHHHHhcCCCCCcccHHHHHHHHhh
Q 028131 29 VCEVEALYELFKKLSSSIFDDGIIHKEEFQLALFR-NKN-KK----NLFADRIFDLFDLKRNGVIEFGEFVRSLGV 98 (213)
Q Consensus 29 ~~~i~~l~~~F~~~d~~~~~~G~l~~~e~~~~l~~-~~~-~~----~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~ 98 (213)
++-+..+...|..++..-+++|+|+.++|+.+|.. .+. .. ...+..++..+|.+++|.|+|++|+.++..
T Consensus 4 e~~i~~~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g~~~t~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~ 79 (88)
T cd05030 4 EKAIETIINVFHQYSVRKGHPDTLYKKEFKQLVEKELPNFLKKEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLVIK 79 (88)
T ss_pred HHHHHHHHHHHHHHhccCCCcccCCHHHHHHHHHHHhhHhhccCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHH
Confidence 45567788888888865113679999999988742 221 12 456777888888888888888888877653
No 72
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.11 E-value=3.8e-05 Score=51.14 Aligned_cols=69 Identities=16% Similarity=0.320 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCCcCHHHHHHHHhc-cc-----CcchHHHHHHHHHhcCCCCCcccHHHHHHHHhhhC
Q 028131 29 VCEVEALYELFKKLSSSIFDDGIIHKEEFQLALFR-NK-----NKKNLFADRIFDLFDLKRNGVIEFGEFVRSLGVFH 100 (213)
Q Consensus 29 ~~~i~~l~~~F~~~d~~~~~~G~l~~~e~~~~l~~-~~-----~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~ 100 (213)
+..+..+..+|..+.. +.+.|+..||+..+.. ++ ...+..+.+++...|.|++|.|+|+||+.+++.+.
T Consensus 4 E~ai~~lI~~FhkYaG---~~~tLsk~Elk~Ll~~Elp~~l~~~~d~~~vd~im~~LD~n~Dg~vdF~EF~~Lv~~l~ 78 (91)
T cd05024 4 EHSMEKMMLTFHKFAG---EKNYLNRDDLQKLMEKEFSEFLKNQNDPMAVDKIMKDLDDCRDGKVGFQSFFSLIAGLL 78 (91)
T ss_pred HHHHHHHHHHHHHHcC---CCCcCCHHHHHHHHHHHhHHHHcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHH
Confidence 4556778889999985 4679999999988722 11 22466789999999999999999999999987654
No 73
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=98.09 E-value=3.7e-05 Score=64.91 Aligned_cols=57 Identities=40% Similarity=0.542 Sum_probs=48.8
Q ss_pred CCChHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhCCCCCCCcCHHHHHHHHHh
Q 028131 102 HALVEDKIAFAFRLYDLRQTGFIEREELKEMVLALLHESDLILSDDVIETIVDKSFSDADTNGDGKIDPEEWKEFVKK 179 (213)
Q Consensus 102 ~~~~~~~~~~~F~~~D~d~~G~I~~~El~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~d~dg~Is~~ef~~~l~~ 179 (213)
.......++.+|+.+|.+++|.|+.+||.. .+.+|..+|.|+||.|+++||...+..
T Consensus 329 ~~~~~~~l~~aF~~~D~dgdG~Is~~E~~~---------------------~~~~F~~~D~d~DG~Is~eEf~~~~~~ 385 (391)
T PRK12309 329 GEAFTHAAQEIFRLYDLDGDGFITREEWLG---------------------SDAVFDALDLNHDGKITPEEMRAGLGA 385 (391)
T ss_pred cChhhHHHHHHHHHhCCCCCCcCcHHHHHH---------------------HHHHHHHhCCCCCCCCcHHHHHHHHHH
Confidence 445668899999999999999999999942 245678999999999999999998864
No 74
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.01 E-value=7.2e-05 Score=49.80 Aligned_cols=69 Identities=16% Similarity=0.335 Sum_probs=51.5
Q ss_pred HHHHHHHHhcCCCCCCcccHHHHHHHHHHHhhh-cCCCCCHHHHHHHHHHHHHhhCCCCCCCcCHHHHHHHHHhC
Q 028131 107 DKIAFAFRLYDLRQTGFIEREELKEMVLALLHE-SDLILSDDVIETIVDKSFSDADTNGDGKIDPEEWKEFVKKN 180 (213)
Q Consensus 107 ~~~~~~F~~~D~d~~G~I~~~El~~~l~~~~~~-~~~~~~~~~~~~~~~~~f~~~d~d~dg~Is~~ef~~~l~~~ 180 (213)
..+..+|..|.. +.+.++..||+.++.+=+-. ++..-.+..++.++ ...|.|+||.|+|.||+.++...
T Consensus 8 ~~lI~~FhkYaG-~~~tLsk~Elk~Ll~~Elp~~l~~~~d~~~vd~im----~~LD~n~Dg~vdF~EF~~Lv~~l 77 (91)
T cd05024 8 EKMMLTFHKFAG-EKNYLNRDDLQKLMEKEFSEFLKNQNDPMAVDKIM----KDLDDCRDGKVGFQSFFSLIAGL 77 (91)
T ss_pred HHHHHHHHHHcC-CCCcCCHHHHHHHHHHHhHHHHcCCCCHHHHHHHH----HHhCCCCCCcCcHHHHHHHHHHH
Confidence 346778888884 45799999999999643221 24444566665555 89999999999999999988653
No 75
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.01 E-value=6.8e-06 Score=42.81 Aligned_cols=26 Identities=54% Similarity=0.900 Sum_probs=23.5
Q ss_pred HHHHHhhCCCCCCCcCHHHHHHHHHh
Q 028131 154 DKSFSDADTNGDGKIDPEEWKEFVKK 179 (213)
Q Consensus 154 ~~~f~~~d~d~dg~Is~~ef~~~l~~ 179 (213)
+++|+.+|.|+||.|+++||..++++
T Consensus 3 ~~~F~~~D~d~dG~I~~~Ef~~~~~~ 28 (29)
T PF00036_consen 3 KEAFREFDKDGDGKIDFEEFKEMMKK 28 (29)
T ss_dssp HHHHHHHSTTSSSEEEHHHHHHHHHH
T ss_pred HHHHHHHCCCCCCcCCHHHHHHHHHh
Confidence 56779999999999999999999874
No 76
>KOG4251 consensus Calcium binding protein [General function prediction only]
Probab=97.98 E-value=3.7e-05 Score=59.76 Aligned_cols=139 Identities=15% Similarity=0.166 Sum_probs=95.6
Q ss_pred HHHHhhcCCCCCCCcCHHHHHHHHhcccCcchHH---------------HHHHHHHhcCCCCCc---------ccHHHHH
Q 028131 38 LFKKLSSSIFDDGIIHKEEFQLALFRNKNKKNLF---------------ADRIFDLFDLKRNGV---------IEFGEFV 93 (213)
Q Consensus 38 ~F~~~d~~~~~~G~l~~~e~~~~l~~~~~~~~~~---------------~~~~~~~~d~~~~~~---------i~~~ef~ 93 (213)
-|...|.+ ++|.|+.+++.--+.......... -.+.+..-+.+..+. ++-.||+
T Consensus 145 hFraVDpd--gDGhvsWdEykvkFlaskghsekevadairlneelkVDeEtqevlenlkdRwyqaDsppadlllteeEfl 222 (362)
T KOG4251|consen 145 HFRAVDPD--GDGHVSWDEYKVKFLASKGHSEKEVADAIRLNEELKVDEETQEVLENLKDRWYQADSPPADLLLTEEEFL 222 (362)
T ss_pred heeeeCCC--CCCceehhhhhhHHHhhcCcchHHHHHHhhccCcccccHHHHHHHHhhhhhhccccCchhhhhhhHHHHH
Confidence 47778999 999999999986553322211111 122333333333333 4458999
Q ss_pred HHHhhhCCCCChHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHh-hhcCCCCCHHHHHHHHHHHHHhhCCCCCCCcCHHH
Q 028131 94 RSLGVFHPHALVEDKIAFAFRLYDLRQTGFIEREELKEMVLALL-HESDLILSDDVIETIVDKSFSDADTNGDGKIDPEE 172 (213)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~F~~~D~d~~G~I~~~El~~~l~~~~-~~~~~~~~~~~~~~~~~~~f~~~d~d~dg~Is~~e 172 (213)
.++..-.+.+....-++.+.+.+|+||+-.++..||....---. ..-|..+.+..+..-.+++-..+|.|+||.++++|
T Consensus 223 sFLHPEhSrgmLrfmVkeivrdlDqdgDkqlSvpeFislpvGTVenqqgqdiddnwvkdRkkEFeElIDsNhDGivTaeE 302 (362)
T KOG4251|consen 223 SFLHPEHSRGMLRFMVKEIVRDLDQDGDKQLSVPEFISLPVGTVENQQGQDIDDNWVKDRKKEFEELIDSNHDGIVTAEE 302 (362)
T ss_pred HHcChHhhhhhHHHHHHHHHHHhccCCCeeecchhhhcCCCcchhhhhccchHHHHHHHHHHHHHHHhhcCCccceeHHH
Confidence 98876555666677889999999999999999999987542111 11256666666666666777888999999999999
Q ss_pred HHHHHH
Q 028131 173 WKEFVK 178 (213)
Q Consensus 173 f~~~l~ 178 (213)
+..++.
T Consensus 303 Le~y~d 308 (362)
T KOG4251|consen 303 LEDYVD 308 (362)
T ss_pred HHhhcC
Confidence 988864
No 77
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=97.92 E-value=1.3e-05 Score=40.25 Aligned_cols=25 Identities=32% Similarity=0.481 Sum_probs=20.8
Q ss_pred HHHHHHhcCCCCCCcccHHHHHHHH
Q 028131 109 IAFAFRLYDLRQTGFIEREELKEMV 133 (213)
Q Consensus 109 ~~~~F~~~D~d~~G~I~~~El~~~l 133 (213)
++.+|+.+|.|++|.|+.+||.+++
T Consensus 1 l~~~F~~~D~d~DG~is~~E~~~~~ 25 (25)
T PF13202_consen 1 LKDAFQQFDTDGDGKISFEEFQRLV 25 (25)
T ss_dssp HHHHHHHHTTTSSSEEEHHHHHHHH
T ss_pred CHHHHHHHcCCCCCcCCHHHHHHHC
Confidence 4678899999999999999998753
No 78
>PF14658 EF-hand_9: EF-hand domain
Probab=97.89 E-value=7.5e-05 Score=46.47 Aligned_cols=60 Identities=15% Similarity=0.270 Sum_probs=38.3
Q ss_pred HHHHhcCCCCCcccHHHHHHHHhhhCCCCChHHHHHHHHHhcCCCCC-CcccHHHHHHHHH
Q 028131 75 IFDLFDLKRNGVIEFGEFVRSLGVFHPHALVEDKIAFAFRLYDLRQT-GFIEREELKEMVL 134 (213)
Q Consensus 75 ~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~F~~~D~d~~-G~I~~~El~~~l~ 134 (213)
.|..+|.++.|.|....+..++.....+.+.+.++..+.+.+|++|. |.|+++.|..+++
T Consensus 3 ~F~~fD~~~tG~V~v~~l~~~Lra~~~~~p~e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~ 63 (66)
T PF14658_consen 3 AFDAFDTQKTGRVPVSDLITYLRAVTGRSPEESELQDLINELDPEGRDGSVNFDTFLAIMR 63 (66)
T ss_pred chhhcCCcCCceEeHHHHHHHHHHHcCCCCcHHHHHHHHHHhCCCCCCceEeHHHHHHHHH
Confidence 45666666666666666666665555335556666666666666665 6666666666654
No 79
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=97.85 E-value=4.7e-05 Score=52.27 Aligned_cols=68 Identities=19% Similarity=0.386 Sum_probs=55.1
Q ss_pred CCHHHHHHHHHHHHHhhcCCCCCCCcCHHHHHHHHhcccCcchHHHHHHHHHhcCCCCCcccHHHHHHHHhh
Q 028131 27 FTVCEVEALYELFKKLSSSIFDDGIIHKEEFQLALFRNKNKKNLFADRIFDLFDLKRNGVIEFGEFVRSLGV 98 (213)
Q Consensus 27 ls~~~i~~l~~~F~~~d~~~~~~G~l~~~e~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~ 98 (213)
++++|.......|+.++. ++|.|+..+...+|...+. +...+..+|...|.+++|.++++||+.++..
T Consensus 4 ls~~e~~~y~~~F~~l~~---~~g~isg~~a~~~f~~S~L-~~~~L~~IW~LaD~~~dG~L~~~EF~iAm~L 71 (104)
T PF12763_consen 4 LSPEEKQKYDQIFQSLDP---QDGKISGDQAREFFMKSGL-PRDVLAQIWNLADIDNDGKLDFEEFAIAMHL 71 (104)
T ss_dssp -SCCHHHHHHHHHHCTSS---STTEEEHHHHHHHHHHTTS-SHHHHHHHHHHH-SSSSSEEEHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCC---CCCeEeHHHHHHHHHHcCC-CHHHHHHHHhhhcCCCCCcCCHHHHHHHHHH
Confidence 677888899999999885 6899999999988766543 4456799999999999999999999987653
No 80
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=97.75 E-value=0.00018 Score=49.37 Aligned_cols=68 Identities=28% Similarity=0.312 Sum_probs=55.7
Q ss_pred ChHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhCCCCCCCcCHHHHHHHHHhChh
Q 028131 104 LVEDKIAFAFRLYDLRQTGFIEREELKEMVLALLHESDLILSDDVIETIVDKSFSDADTNGDGKIDPEEWKEFVKKNPS 182 (213)
Q Consensus 104 ~~~~~~~~~F~~~D~d~~G~I~~~El~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~d~dg~Is~~ef~~~l~~~~~ 182 (213)
.....+..+|+..|. ++|.|+.++.+.++... .++.+.+..++ ..+|.|++|.++.+||+-++.-...
T Consensus 7 ~e~~~y~~~F~~l~~-~~g~isg~~a~~~f~~S------~L~~~~L~~IW----~LaD~~~dG~L~~~EF~iAm~Li~~ 74 (104)
T PF12763_consen 7 EEKQKYDQIFQSLDP-QDGKISGDQAREFFMKS------GLPRDVLAQIW----NLADIDNDGKLDFEEFAIAMHLINR 74 (104)
T ss_dssp CHHHHHHHHHHCTSS-STTEEEHHHHHHHHHHT------TSSHHHHHHHH----HHH-SSSSSEEEHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCC-CCCeEeHHHHHHHHHHc------CCCHHHHHHHH----hhhcCCCCCcCCHHHHHHHHHHHHH
Confidence 445789999999985 67999999999999754 77777776666 8999999999999999998875543
No 81
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.66 E-value=0.00095 Score=59.70 Aligned_cols=168 Identities=19% Similarity=0.243 Sum_probs=120.5
Q ss_pred cCCCCHHHHHHHHHHHHHhhcCCCCCCCcCHHHHHHHHhcccCcchHHHHHHHHHhcCCCCCcccHHHHHHHHhhhC---
Q 028131 24 ETPFTVCEVEALYELFKKLSSSIFDDGIIHKEEFQLALFRNKNKKNLFADRIFDLFDLKRNGVIEFGEFVRSLGVFH--- 100 (213)
Q Consensus 24 ~~~ls~~~i~~l~~~F~~~d~~~~~~G~l~~~e~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~--- 100 (213)
.+..|.++-..-...|..+-. +.|+|+-..-+.+|...+ .+.+.+..++.+.|.|+||+++..||...+....
T Consensus 7 ~WavT~~Er~K~~~qF~~Lkp---~~gfitg~qArnfflqS~-LP~~VLaqIWALsDldkDGrmdi~EfSIAmkLi~lkL 82 (1118)
T KOG1029|consen 7 PWAVTDEERQKHDAQFGQLKP---GQGFITGDQARNFFLQSG-LPTPVLAQIWALSDLDKDGRMDIREFSIAMKLIKLKL 82 (1118)
T ss_pred ccccchHHHHHHHHHHhccCC---CCCccchHhhhhhHHhcC-CChHHHHHHHHhhhcCccccchHHHHHHHHHHHHHHh
Confidence 355677777777788888865 689999999888876654 3445568999999999999999999987765210
Q ss_pred -C---------------------------------------------------------------------CC-------
Q 028131 101 -P---------------------------------------------------------------------HA------- 103 (213)
Q Consensus 101 -~---------------------------------------------------------------------~~------- 103 (213)
. .+
T Consensus 83 qG~~lP~~LPPsll~~~~~~~p~~~p~fg~Gsls~~qpL~~a~p~~m~~s~v~~~Pv~vatvpS~~~~sl~nGplp~~~~ 162 (1118)
T KOG1029|consen 83 QGIQLPPVLPPSLLKQPPRNAPSTWPGFGMGSLSYSQPLPPAAPRRMSSSPVVGPPVSVATVPSSRHNSLPNGPLPPTSN 162 (1118)
T ss_pred cCCcCCCCCChHHhccCCcCCCCCCCccCCCCcCcCCCCCcccccccCCCccCCCCcccccCCCCCCCCCCCCCCCCCCC
Confidence 0 00
Q ss_pred -----------------------------ChHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHhhhcCCCCCHHHHHHHHH
Q 028131 104 -----------------------------LVEDKIAFAFRLYDLRQTGFIEREELKEMVLALLHESDLILSDDVIETIVD 154 (213)
Q Consensus 104 -----------------------------~~~~~~~~~F~~~D~d~~G~I~~~El~~~l~~~~~~~~~~~~~~~~~~~~~ 154 (213)
...-++...|...|+...|+++-..=+.+|.. ..++...+..++
T Consensus 163 spl~~~ss~se~~~~~~s~~q~~eWAVp~~~klKY~QlFNa~DktrsG~Lsg~qaR~aL~q------S~Lpq~~LA~IW- 235 (1118)
T KOG1029|consen 163 SPLPHDSSVSEGRPSIESVNQLEEWAVPQHNKLKYRQLFNALDKTRSGYLSGQQARSALGQ------SGLPQNQLAHIW- 235 (1118)
T ss_pred CCCCCCcchhhcCccchhhhhhhhccccchhhhHHHHHhhhcccccccccccHHHHHHHHh------cCCchhhHhhhe-
Confidence 00125788999999999999999999999854 356666665555
Q ss_pred HHHHhhCCCCCCCcCHHHHHHHHHhChhhHhhcCchhhhhhhhhcCccccc
Q 028131 155 KSFSDADTNGDGKIDPEEWKEFVKKNPSLIKNMTLPYLKDITLAFPSFVLS 205 (213)
Q Consensus 155 ~~f~~~d~d~dg~Is~~ef~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (213)
...|.|+||.++-+||+-.+........-.-++..-.-.+-=|+|+..
T Consensus 236 ---~LsDvd~DGkL~~dEfilam~liema~sGq~lP~tlP~E~Vpp~~r~~ 283 (1118)
T KOG1029|consen 236 ---TLSDVDGDGKLSADEFILAMHLIEMAKSGQPLPKTLPPELVPPSFRSS 283 (1118)
T ss_pred ---eeeccCCCCcccHHHHHHHHHHHHHHhcCCCCCCCCChhhcCcccccc
Confidence 788999999999999998886655444444444333333444455443
No 82
>KOG4065 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.65 E-value=0.00024 Score=48.82 Aligned_cols=71 Identities=27% Similarity=0.369 Sum_probs=57.5
Q ss_pred HHHHHHHHHhcCCCCCCcccHHHHHHHHHHHhhh------cCCCCCHHHHHHHHHHHHHhhCCCCCCCcCHHHHHHH
Q 028131 106 EDKIAFAFRLYDLRQTGFIEREELKEMVLALLHE------SDLILSDDVIETIVDKSFSDADTNGDGKIDPEEWKEF 176 (213)
Q Consensus 106 ~~~~~~~F~~~D~d~~G~I~~~El~~~l~~~~~~------~~~~~~~~~~~~~~~~~f~~~d~d~dg~Is~~ef~~~ 176 (213)
++.--..|.+.|-|++|.|+--||..++...-.. .-+-+++.+++.+++.+.+.-|.|+||.|+|-||.+.
T Consensus 66 eqlqfHYF~MHDldknn~lDGiEl~kAiTH~H~~h~~ghep~Pl~sE~Ele~~iD~vL~DdDfN~DG~IDYgEflK~ 142 (144)
T KOG4065|consen 66 EQLQFHYFSMHDLDKNNFLDGIELLKAITHTHDAHDSGHEPVPLSSEAELERLIDAVLDDDDFNGDGVIDYGEFLKR 142 (144)
T ss_pred HHHhhhhhhhhccCcCCcchHHHHHHHHHHHhhhhhcCCCCCCCCCHHHHHHHHHHHhcccccCCCceeeHHHHHhh
Confidence 3344467899999999999999999888755221 2345667799999999999999999999999999875
No 83
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=97.59 E-value=0.0027 Score=56.86 Aligned_cols=166 Identities=13% Similarity=0.172 Sum_probs=122.6
Q ss_pred CCHHHHHHHHHHHHHhhcCCCCCCCcCHHHHHHHHhcccCc-chHHHHHHHHHhcCCCCCcccHHHHHHHHhhhCCCCCh
Q 028131 27 FTVCEVEALYELFKKLSSSIFDDGIIHKEEFQLALFRNKNK-KNLFADRIFDLFDLKRNGVIEFGEFVRSLGVFHPHALV 105 (213)
Q Consensus 27 ls~~~i~~l~~~F~~~d~~~~~~G~l~~~e~~~~l~~~~~~-~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~ 105 (213)
.......-+...|+..|.+ ++|.++..+..+++...... ....+..+|+..+..+++.+.+.+|..+....... +
T Consensus 130 ~~~~~~~wi~~~~~~ad~~--~~~~~~~~~~~~~~~~~n~~l~~~~~~~~f~e~~~~~~~k~~~~~~~~~~~~~~~r-p- 205 (746)
T KOG0169|consen 130 QRSRREHWIHSIFQEADKN--KNGHMSFDEVLDLLKQLNVQLSESKARRLFKESDNSQTGKLEEEEFVKFRKELTKR-P- 205 (746)
T ss_pred hcchHHHHHHHHHHHHccc--cccccchhhHHHHHHHHHHhhhHHHHHHHHHHHHhhccceehHHHHHHHHHhhccC-c-
Confidence 3444455667889999999 99999999999888665533 45566788888888888999999999988766632 2
Q ss_pred HHHHHHHHHhcCCCCCCcccHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhCCCCCCCcCHHHHHHHHHhC-hhhH
Q 028131 106 EDKIAFAFRLYDLRQTGFIEREELKEMVLALLHESDLILSDDVIETIVDKSFSDADTNGDGKIDPEEWKEFVKKN-PSLI 184 (213)
Q Consensus 106 ~~~~~~~F~~~D~d~~G~I~~~El~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~d~dg~Is~~ef~~~l~~~-~~~~ 184 (213)
++...|..+-.+ .++++.++|..++... +...+.+.+.++.+++.+-..-.....+.++.+.|..+|... .+.+
T Consensus 206 --ev~~~f~~~s~~-~~~ls~~~L~~Fl~~~--q~e~~~~~~~ae~ii~~~e~~k~~~~~~~l~ldgF~~yL~S~~~~~f 280 (746)
T KOG0169|consen 206 --EVYFLFVQYSHG-KEYLSTDDLLRFLEEE--QGEDGATLDEAEEIIERYEPSKEFRRHGLLSLDGFTRYLFSPDCNPF 280 (746)
T ss_pred --hHHHHHHHHhCC-CCccCHHHHHHHHHHh--cccccccHHHHHHHHHHhhhhhhccccceecHHHHHHHhcCccCCCC
Confidence 678888887765 8999999999999876 334677788888888655444445566779999999999753 3344
Q ss_pred hhcCchhhhhhhhhcCc
Q 028131 185 KNMTLPYLKDITLAFPS 201 (213)
Q Consensus 185 ~~~~~~~~~~~~~~~~~ 201 (213)
........+||..-...
T Consensus 281 dp~~~~V~qDM~qPLsH 297 (746)
T KOG0169|consen 281 DPIHRKVHQDMDQPLSH 297 (746)
T ss_pred CcccchhhhcccCcchh
Confidence 45555556666654444
No 84
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=97.59 E-value=7.4e-05 Score=37.42 Aligned_cols=24 Identities=46% Similarity=0.794 Sum_probs=21.1
Q ss_pred HHHHHhhCCCCCCCcCHHHHHHHH
Q 028131 154 DKSFSDADTNGDGKIDPEEWKEFV 177 (213)
Q Consensus 154 ~~~f~~~d~d~dg~Is~~ef~~~l 177 (213)
+.+|..+|.|+||.|+.+||.+++
T Consensus 2 ~~~F~~~D~d~DG~is~~E~~~~~ 25 (25)
T PF13202_consen 2 KDAFQQFDTDGDGKISFEEFQRLV 25 (25)
T ss_dssp HHHHHHHTTTSSSEEEHHHHHHHH
T ss_pred HHHHHHHcCCCCCcCCHHHHHHHC
Confidence 457799999999999999999864
No 85
>KOG0751 consensus Mitochondrial aspartate/glutamate carrier protein Aralar/Citrin (contains EF-hand Ca2+-binding domains) [Energy production and conversion]
Probab=97.56 E-value=0.0011 Score=56.69 Aligned_cols=101 Identities=24% Similarity=0.391 Sum_probs=74.2
Q ss_pred CCCCcCHHHHHHHHhcccCcchHHHHHHHHHhcCCCCCcccHHHHHHHHhhhCCCC------------------------
Q 028131 48 DDGIIHKEEFQLALFRNKNKKNLFADRIFDLFDLKRNGVIEFGEFVRSLGVFHPHA------------------------ 103 (213)
Q Consensus 48 ~~G~l~~~e~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~------------------------ 103 (213)
++|.|+++||+ ++......+.......|..+|+.++|.++++++.+++....-..
T Consensus 87 KDglisf~eF~-afe~~lC~pDal~~~aFqlFDr~~~~~vs~~~~~~if~~t~l~~~~~f~~d~efI~~~Fg~~~~r~~n 165 (694)
T KOG0751|consen 87 KDGLISFQEFR-AFESVLCAPDALFEVAFQLFDRLGNGEVSFEDVADIFGQTNLHHHIPFNWDSEFIKLHFGDIRKRHLN 165 (694)
T ss_pred ccccccHHHHH-HHHhhccCchHHHHHHHHHhcccCCCceehHHHHHHHhccccccCCCccCCcchHHHHhhhHHHHhcc
Confidence 88999999988 66555455566667889999999999999999988876432110
Q ss_pred ----------ChHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHhhhcCCCCCHHHHHHHH
Q 028131 104 ----------LVEDKIAFAFRLYDLRQTGFIEREELKEMVLALLHESDLILSDDVIETIV 153 (213)
Q Consensus 104 ----------~~~~~~~~~F~~~D~d~~G~I~~~El~~~l~~~~~~~~~~~~~~~~~~~~ 153 (213)
-..+..+.+|+..|..++|.|+.=+++.++-.+ ..++....++..+
T Consensus 166 y~~f~Q~lh~~~~E~~~qafr~~d~~~ng~is~Ldfq~imvt~----~~h~lt~~v~~nl 221 (694)
T KOG0751|consen 166 YAEFTQFLHEFQLEHAEQAFREKDKAKNGFISVLDFQDIMVTI----RIHLLTPFVEENL 221 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCCCeeeeechHhhhhhh----hhhcCCHHHhhhh
Confidence 012457789999999999999999999988766 5555555444333
No 86
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=97.50 E-value=0.0005 Score=57.87 Aligned_cols=89 Identities=25% Similarity=0.341 Sum_probs=67.4
Q ss_pred CCCCcCHHHHHHHHhcccC-------------cchHHHHHHHHHhcCCCCCcccHHHHHHHHhhhCCC---CChHHHHHH
Q 028131 48 DDGIIHKEEFQLALFRNKN-------------KKNLFADRIFDLFDLKRNGVIEFGEFVRSLGVFHPH---ALVEDKIAF 111 (213)
Q Consensus 48 ~~G~l~~~e~~~~l~~~~~-------------~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~---~~~~~~~~~ 111 (213)
.+|++.+..-.+.+..... .....++.+|+.+|.|++|.|+.+||.+.|..+.+. ....+.+..
T Consensus 512 ~d~~v~Y~~~~~~l~~e~~~~ea~~slvetLYr~ks~LetiF~~iD~D~SG~isldEF~~a~~l~~sh~~~~i~~~~i~~ 591 (631)
T KOG0377|consen 512 DDGKVEYKSTLDNLDTEVILEEAGSSLVETLYRNKSSLETIFNIIDADNSGEISLDEFRTAWKLLSSHMNGAISDDEILE 591 (631)
T ss_pred cCcceehHhHHHHhhhhhHHHHHHhHHHHHHHhchhhHHHHHHHhccCCCCceeHHHHHHHHHHHHhhcCCCcCHHHHHH
Confidence 5677777766555422111 112235889999999999999999999998765432 345678999
Q ss_pred HHHhcCCCCCCcccHHHHHHHHHHH
Q 028131 112 AFRLYDLRQTGFIEREELKEMVLAL 136 (213)
Q Consensus 112 ~F~~~D~d~~G~I~~~El~~~l~~~ 136 (213)
..+.+|.|+||.|+..||.++++-+
T Consensus 592 la~~mD~NkDG~IDlNEfLeAFrlv 616 (631)
T KOG0377|consen 592 LARSMDLNKDGKIDLNEFLEAFRLV 616 (631)
T ss_pred HHHhhccCCCCcccHHHHHHHHhhh
Confidence 9999999999999999999988644
No 87
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=97.48 E-value=0.00042 Score=58.65 Aligned_cols=55 Identities=31% Similarity=0.407 Sum_probs=48.2
Q ss_pred chHHHHHHHHHhcCCCCCcccHHHHHHHHhhhCCCCChHHHHHHHHHhcCCCCCCcccHHHHHHHHHHH
Q 028131 68 KNLFADRIFDLFDLKRNGVIEFGEFVRSLGVFHPHALVEDKIAFAFRLYDLRQTGFIEREELKEMVLAL 136 (213)
Q Consensus 68 ~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~F~~~D~d~~G~I~~~El~~~l~~~ 136 (213)
....+..+|..+|.+++|.|+.+||.. ...+|+.+|.|++|.|+.+||.+++...
T Consensus 332 ~~~~l~~aF~~~D~dgdG~Is~~E~~~--------------~~~~F~~~D~d~DG~Is~eEf~~~~~~~ 386 (391)
T PRK12309 332 FTHAAQEIFRLYDLDGDGFITREEWLG--------------SDAVFDALDLNHDGKITPEEMRAGLGAA 386 (391)
T ss_pred hhHHHHHHHHHhCCCCCCcCcHHHHHH--------------HHHHHHHhCCCCCCCCcHHHHHHHHHHH
Confidence 345568899999999999999999952 5778999999999999999999998765
No 88
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=97.47 E-value=5.6e-05 Score=52.80 Aligned_cols=64 Identities=27% Similarity=0.465 Sum_probs=44.2
Q ss_pred CChHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhCCCCCCCcCHHHHHHH
Q 028131 103 ALVEDKIAFAFRLYDLRQTGFIEREELKEMVLALLHESDLILSDDVIETIVDKSFSDADTNGDGKIDPEEWKEF 176 (213)
Q Consensus 103 ~~~~~~~~~~F~~~D~d~~G~I~~~El~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~d~dg~Is~~ef~~~ 176 (213)
......+...|..+|.|+||.|+..||..+...+ ...+. .+..++..+|.|+||.||..||..+
T Consensus 50 ~~~~~~~~W~F~~LD~n~d~~L~~~El~~l~~~l-------~~~e~---C~~~F~~~CD~n~d~~Is~~EW~~C 113 (113)
T PF10591_consen 50 SECKRVVHWKFCQLDRNKDGVLDRSELKPLRRPL-------MPPEH---CARPFFRSCDVNKDGKISLDEWCNC 113 (113)
T ss_dssp GGGHHHHHHHHHHH--T-SSEE-TTTTGGGGSTT-------STTGG---GHHHHHHHH-TT-SSSEEHHHHHHH
T ss_pred hhhhhhhhhhHhhhcCCCCCccCHHHHHHHHHHH-------hhhHH---HHHHHHHHcCCCCCCCCCHHHHccC
Confidence 3456789999999999999999999999876322 22222 2456669999999999999999864
No 89
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=97.32 E-value=0.0011 Score=38.94 Aligned_cols=49 Identities=24% Similarity=0.346 Sum_probs=29.6
Q ss_pred ccHHHHHHHHhhhCCCCChHHHHHHHHHhcCCCCCCcccHHHHHHHHHHH
Q 028131 87 IEFGEFVRSLGVFHPHALVEDKIAFAFRLYDLRQTGFIEREELKEMVLAL 136 (213)
Q Consensus 87 i~~~ef~~~~~~~~~~~~~~~~~~~~F~~~D~d~~G~I~~~El~~~l~~~ 136 (213)
++|.|...++..+- -...++-+..+|+.+|.+++|.+..+||..+++.+
T Consensus 2 msf~Evk~lLk~~N-I~~~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~~L 50 (51)
T PF14788_consen 2 MSFKEVKKLLKMMN-IEMDDEYARQLFQECDKSQSGRLEGEEFEEFYKRL 50 (51)
T ss_dssp BEHHHHHHHHHHTT-----HHHHHHHHHHH-SSSSSEBEHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHc-cCcCHHHHHHHHHHhcccCCCCccHHHHHHHHHHh
Confidence 56666666665433 44555666777777777777777777777776543
No 90
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton]
Probab=97.27 E-value=0.0011 Score=56.93 Aligned_cols=75 Identities=24% Similarity=0.281 Sum_probs=63.7
Q ss_pred hcCCCCHHHHHHHHHHHHHhhcCCCCCCCcCHHHHHHHHhcccCcc----hHHHHHHHHHhcCCCCCcccHHHHHHHHhh
Q 028131 23 AETPFTVCEVEALYELFKKLSSSIFDDGIIHKEEFQLALFRNKNKK----NLFADRIFDLFDLKRNGVIEFGEFVRSLGV 98 (213)
Q Consensus 23 ~~~~ls~~~i~~l~~~F~~~d~~~~~~G~l~~~e~~~~l~~~~~~~----~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~ 98 (213)
...++|+.|+..+...|...| + ++|+++..++..++....... ...++.+....+.+.+|.|+|++|+.++..
T Consensus 9 ~~~~~tq~El~~l~~kF~~~d-~--~~G~v~~~~l~~~f~k~~~~~g~~~~eei~~~l~~~~~~~~g~v~fe~f~~~~~~ 85 (627)
T KOG0046|consen 9 LQSQLTQEELRELKEKFNKLD-D--QKGYVTVYELPDAFKKAKLPLGYFVREEIKEILGEVGVDADGRVEFEEFVGIFLN 85 (627)
T ss_pred hcccccHHHHHHHHHHHHhhc-C--CCCeeehHHhHHHHHHhcccccchhHHHHHHHHhccCCCcCCccCHHHHHHHHHh
Confidence 355699999999999999999 7 899999999999986654333 666788999999999999999999997755
Q ss_pred hC
Q 028131 99 FH 100 (213)
Q Consensus 99 ~~ 100 (213)
+.
T Consensus 86 l~ 87 (627)
T KOG0046|consen 86 LK 87 (627)
T ss_pred hh
Confidence 54
No 91
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=97.22 E-value=0.00046 Score=36.33 Aligned_cols=27 Identities=37% Similarity=0.481 Sum_probs=18.8
Q ss_pred HHHHHHHHhhcCCCCCCCcCHHHHHHHHh
Q 028131 34 ALYELFKKLSSSIFDDGIIHKEEFQLALF 62 (213)
Q Consensus 34 ~l~~~F~~~d~~~~~~G~l~~~e~~~~l~ 62 (213)
++..+|..+|.+ ++|+|+.+||..+|.
T Consensus 1 ~l~~~F~~~D~d--~dG~I~~~el~~~l~ 27 (31)
T PF13405_consen 1 RLREAFKMFDKD--GDGFIDFEELRAILR 27 (31)
T ss_dssp HHHHHHHHH-TT--SSSEEEHHHHHHHHH
T ss_pred CHHHHHHHHCCC--CCCcCcHHHHHHHHH
Confidence 356677777777 777888877777764
No 92
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=97.12 E-value=0.0018 Score=38.08 Aligned_cols=48 Identities=23% Similarity=0.571 Sum_probs=36.7
Q ss_pred ccHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhCCCCCCCcCHHHHHHHHHh
Q 028131 124 IEREELKEMVLALLHESDLILSDDVIETIVDKSFSDADTNGDGKIDPEEWKEFVKK 179 (213)
Q Consensus 124 I~~~El~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~d~dg~Is~~ef~~~l~~ 179 (213)
++..|++.+|+.+ +..++++-+. .+|..+|.+++|.+..+||..++..
T Consensus 2 msf~Evk~lLk~~----NI~~~~~yA~----~LFq~~D~s~~g~Le~~Ef~~Fy~~ 49 (51)
T PF14788_consen 2 MSFKEVKKLLKMM----NIEMDDEYAR----QLFQECDKSQSGRLEGEEFEEFYKR 49 (51)
T ss_dssp BEHHHHHHHHHHT----T----HHHHH----HHHHHH-SSSSSEBEHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH----ccCcCHHHHH----HHHHHhcccCCCCccHHHHHHHHHH
Confidence 6889999999988 8888887654 4558999999999999999998764
No 93
>KOG0040 consensus Ca2+-binding actin-bundling protein (spectrin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=97.11 E-value=0.0013 Score=62.72 Aligned_cols=65 Identities=20% Similarity=0.428 Sum_probs=55.8
Q ss_pred HHHHHHHhcCCCCCCcccHHHHHHHHHHHhhhcCCCCC-------HHHHHHHHHHHHHhhCCCCCCCcCHHHHHHHHHhC
Q 028131 108 KIAFAFRLYDLRQTGFIEREELKEMVLALLHESDLILS-------DDVIETIVDKSFSDADTNGDGKIDPEEWKEFVKKN 180 (213)
Q Consensus 108 ~~~~~F~~~D~d~~G~I~~~El~~~l~~~~~~~~~~~~-------~~~~~~~~~~~f~~~d~d~dg~Is~~ef~~~l~~~ 180 (213)
++..+|+.||.+.+|.++..+|+.+|+++ |+.++ +++++.++ ...|++.+|+|+..+|+++|..+
T Consensus 2254 EFs~~fkhFDkek~G~Ldhq~F~sCLrsl----gY~lpmvEe~~~~p~fe~~l----d~vDP~r~G~Vsl~dY~afmi~~ 2325 (2399)
T KOG0040|consen 2254 EFSMMFKHFDKEKNGRLDHQHFKSCLRSL----GYDLPMVEEGEPEPEFEEIL----DLVDPNRDGYVSLQDYMAFMISK 2325 (2399)
T ss_pred HHHHHHHHhchhhccCCcHHHHHHHHHhc----CCCCcccccCCCChhHHHHH----HhcCCCCcCcccHHHHHHHHHhc
Confidence 57889999999999999999999999998 76663 22555555 89999999999999999999753
No 94
>PF09069 EF-hand_3: EF-hand; InterPro: IPR015154 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=97.11 E-value=0.0034 Score=41.76 Aligned_cols=79 Identities=19% Similarity=0.290 Sum_probs=54.4
Q ss_pred HHHHHHHHHhcCCCCCCcccHHHHHHHHHHHhh---hcCCCCCHHHHHHHHHHHHHhhCCCCCCCcCHHHHHHHHHhChh
Q 028131 106 EDKIAFAFRLYDLRQTGFIEREELKEMVLALLH---ESDLILSDDVIETIVDKSFSDADTNGDGKIDPEEWKEFVKKNPS 182 (213)
Q Consensus 106 ~~~~~~~F~~~D~d~~G~I~~~El~~~l~~~~~---~~~~~~~~~~~~~~~~~~f~~~d~d~dg~Is~~ef~~~l~~~~~ 182 (213)
.++++.+|+.+ .|.+|.++...|..+|..++. ..|+..+-.-++..++++|... .....|+.++|+.|+...|.
T Consensus 2 ~dKyRylFsli-sd~~g~~~~~~l~~lL~d~lqip~~vgE~~aFg~~e~sv~sCF~~~--~~~~~I~~~~Fl~wl~~ePq 78 (90)
T PF09069_consen 2 EDKYRYLFSLI-SDSNGCMDQRKLGLLLHDVLQIPRAVGEGPAFGYIEPSVRSCFQQV--QLSPKITENQFLDWLMSEPQ 78 (90)
T ss_dssp HHHHHHHHHHH-S-TTS-B-HHHHHHHHHHHHHHHHHTT-GGGGT--HHHHHHHHHHT--TT-S-B-HHHHHHHHHT--T
T ss_pred hHHHHHHHHHH-cCCCCCCcHHHHHHHHHHHHHHHHHhCccccccCcHHHHHHHhccc--CCCCccCHHHHHHHHHhCCC
Confidence 47899999999 588899999999999987653 2455444444778888889886 35578999999999999998
Q ss_pred hHhhc
Q 028131 183 LIKNM 187 (213)
Q Consensus 183 ~~~~~ 187 (213)
.+.++
T Consensus 79 ~lVWL 83 (90)
T PF09069_consen 79 SLVWL 83 (90)
T ss_dssp TTTHH
T ss_pred eeeHH
Confidence 77665
No 95
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=96.98 E-value=0.00087 Score=46.80 Aligned_cols=54 Identities=22% Similarity=0.226 Sum_probs=19.7
Q ss_pred HHHHHHhcCCCCCcccHHHHHHHHhhhCCCCChHHHHHHHHHhcCCCCCCcccHHHH
Q 028131 73 DRIFDLFDLKRNGVIEFGEFVRSLGVFHPHALVEDKIAFAFRLYDLRQTGFIEREEL 129 (213)
Q Consensus 73 ~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~F~~~D~d~~G~I~~~El 129 (213)
.-.|..+|.|++|.++..|+..+...+. ..+.=++..|+.+|.|+||.|+..|+
T Consensus 57 ~W~F~~LD~n~d~~L~~~El~~l~~~l~---~~e~C~~~F~~~CD~n~d~~Is~~EW 110 (113)
T PF10591_consen 57 HWKFCQLDRNKDGVLDRSELKPLRRPLM---PPEHCARPFFRSCDVNKDGKISLDEW 110 (113)
T ss_dssp HHHHHHH--T-SSEE-TTTTGGGGSTTS---TTGGGHHHHHHHH-TT-SSSEEHHHH
T ss_pred hhhHhhhcCCCCCccCHHHHHHHHHHHh---hhHHHHHHHHHHcCCCCCCCCCHHHH
Confidence 3344444444444444444443332221 11112344444444444444444444
No 96
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=96.85 E-value=0.0055 Score=40.11 Aligned_cols=70 Identities=19% Similarity=0.364 Sum_probs=52.0
Q ss_pred HHHHHHHhcCCCCCCcccHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhCCCCCCCcCHHHHHHHHHhC
Q 028131 108 KIAFAFRLYDLRQTGFIEREELKEMVLALLHESDLILSDDVIETIVDKSFSDADTNGDGKIDPEEWKEFVKKN 180 (213)
Q Consensus 108 ~~~~~F~~~D~d~~G~I~~~El~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~d~dg~Is~~ef~~~l~~~ 180 (213)
++..+|+.+.. +.+.|+.++|..+|..-- .....+++.+..++...-........+.+|+++|..+|...
T Consensus 1 ei~~if~~ys~-~~~~mt~~~f~~FL~~eQ--~~~~~~~~~~~~li~~~~~~~~~~~~~~lt~~gF~~fL~S~ 70 (83)
T PF09279_consen 1 EIEEIFRKYSS-DKEYMTAEEFRRFLREEQ--GEPRLTDEQAKELIEKFEPDERNRQKGQLTLEGFTRFLFSD 70 (83)
T ss_dssp HHHHHHHHHCT-TSSSEEHHHHHHHHHHTS--S-TTSSHHHHHHHHHHHHHHHHHHCTTEEEHHHHHHHHHST
T ss_pred CHHHHHHHHhC-CCCcCCHHHHHHHHHHHh--ccccCcHHHHHHHHHHHccchhhcccCCcCHHHHHHHHCCC
Confidence 36789999966 789999999999997641 12356888988888543333323356899999999999754
No 97
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=96.85 E-value=0.0013 Score=32.82 Aligned_cols=27 Identities=41% Similarity=0.615 Sum_probs=22.9
Q ss_pred HHHHHHhcCCCCCCcccHHHHHHHHHH
Q 028131 109 IAFAFRLYDLRQTGFIEREELKEMVLA 135 (213)
Q Consensus 109 ~~~~F~~~D~d~~G~I~~~El~~~l~~ 135 (213)
++.+|+.+|.+++|.|+..+|..+++.
T Consensus 2 ~~~~f~~~d~~~~g~i~~~e~~~~~~~ 28 (29)
T smart00054 2 LKEAFRLFDKDGDGKIDFEEFKDLLKA 28 (29)
T ss_pred HHHHHHHHCCCCCCcEeHHHHHHHHHh
Confidence 567899999999999999999888754
No 98
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=96.74 E-value=0.005 Score=54.30 Aligned_cols=112 Identities=22% Similarity=0.356 Sum_probs=85.9
Q ss_pred CchHhhhhcCCCCHHHHHHHHHHHHHhhc-CCC--------CC---CCcCHHHHHHHHhcccC--cchHHHHHHHHHhcC
Q 028131 16 EEPTVLAAETPFTVCEVEALYELFKKLSS-SIF--------DD---GIIHKEEFQLALFRNKN--KKNLFADRIFDLFDL 81 (213)
Q Consensus 16 ~~~~~l~~~~~ls~~~i~~l~~~F~~~d~-~~~--------~~---G~l~~~e~~~~l~~~~~--~~~~~~~~~~~~~d~ 81 (213)
..++.+.+.+.||..++..++.+|..-=. +.. .. -++++..|...+..+.. .......++|+..|.
T Consensus 487 t~lrs~~~~~~lt~~dL~~lYd~f~~e~~~~~~~~~~~~p~~~~~eqyi~~~~f~~~f~~l~pw~~s~~~~~rlF~l~D~ 566 (671)
T KOG4347|consen 487 TILRSVVQTTSLTNTDLENLYDLFKEEHLTNSIGLGRSDPDFEAFEQYIDYAQFLEVFRELLPWAVSLIFLERLFRLLDD 566 (671)
T ss_pred HHHHhhcccCccCHHHHHHHHHHHHHHHhccCcccCCCCCCchHHHHHHHHhhHHHHhhccCchhHHHHHHHHHHHhccc
Confidence 56777788889999999999999986211 100 00 13455555555444332 234567999999999
Q ss_pred CCCCcccHHHHHHHHhhhCCCCChHHHHHHHHHhcCCCCCCcccHHHH
Q 028131 82 KRNGVIEFGEFVRSLGVFHPHALVEDKIAFAFRLYDLRQTGFIEREEL 129 (213)
Q Consensus 82 ~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~F~~~D~d~~G~I~~~El 129 (213)
+.+|.++|.+++..+..++ .+..-++++.+|+++|.+++ ....+|+
T Consensus 567 s~~g~Ltf~~lv~gL~~l~-~~~~~ek~~l~y~lh~~p~~-~~d~e~~ 612 (671)
T KOG4347|consen 567 SMTGLLTFKDLVSGLSILK-AGDALEKLKLLYKLHDPPAD-ELDREEV 612 (671)
T ss_pred CCcceeEHHHHHHHHHHHH-hhhHHHHHHHHHhhccCCcc-ccccccc
Confidence 9999999999999999998 57777899999999999999 9999988
No 99
>KOG2562 consensus Protein phosphatase 2 regulatory subunit [RNA processing and modification]
Probab=96.68 E-value=0.025 Score=48.18 Aligned_cols=130 Identities=23% Similarity=0.379 Sum_probs=76.6
Q ss_pred HHHHHhhcCCCCCCCcCHHHHHHHHhccc-C------cchH---------HHHHHHHHhcCCCCCcccHHHHHHH-----
Q 028131 37 ELFKKLSSSIFDDGIIHKEEFQLALFRNK-N------KKNL---------FADRIFDLFDLKRNGVIEFGEFVRS----- 95 (213)
Q Consensus 37 ~~F~~~d~~~~~~G~l~~~e~~~~l~~~~-~------~~~~---------~~~~~~~~~d~~~~~~i~~~ef~~~----- 95 (213)
+.+..++.. +.|++...+|.-.|..+. . ...+ .+.++|=.++...+|.|+.++.+..
T Consensus 178 ~~v~~l~~~--~~~yl~q~df~~~Lqeli~Thpl~~l~~~pEf~~~Y~~tvi~rIFy~~nrs~tG~iti~el~~snll~~ 255 (493)
T KOG2562|consen 178 QFVNLLIQA--GCSYLRQDDFKPYLQELIATHPLEFLDEEPEFQERYAETVIQRIFYYLNRSRTGRITIQELLRSNLLDA 255 (493)
T ss_pred HHHHHHhcc--CccceeccccHHHHHHHHhcCCchhhccChhHHHHHHHHHhhhhheeeCCccCCceeHHHHHHhHHHHH
Confidence 345555555 667777777665553321 0 0111 1355666667778888888765432
Q ss_pred HhhhCCCCChH--------HHHHHH---HHhcCCCCCCcccHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHH----hh
Q 028131 96 LGVFHPHALVE--------DKIAFA---FRLYDLRQTGFIEREELKEMVLALLHESDLILSDDVIETIVDKSFS----DA 160 (213)
Q Consensus 96 ~~~~~~~~~~~--------~~~~~~---F~~~D~d~~G~I~~~El~~~l~~~~~~~~~~~~~~~~~~~~~~~f~----~~ 160 (213)
+..+....... +....+ |-.+|.|++|.|+.++|..+... -++ ..+++.+|. ..
T Consensus 256 l~~l~eEed~nq~~~~FS~e~f~viy~kFweLD~Dhd~lidk~~L~ry~d~-------tlt----~~ivdRIFs~v~r~~ 324 (493)
T KOG2562|consen 256 LLELDEEEDINQVTRYFSYEHFYVIYCKFWELDTDHDGLIDKEDLKRYGDH-------TLT----ERIVDRIFSQVPRGF 324 (493)
T ss_pred HHHHHHHhhhhhhhhheeHHHHHHHHHHHhhhccccccccCHHHHHHHhcc-------chh----hHHHHHHHhhccccc
Confidence 32222111111 123333 66679999999999999987632 233 234555555 44
Q ss_pred CCCCCCCcCHHHHHHHHHh
Q 028131 161 DTNGDGKIDPEEWKEFVKK 179 (213)
Q Consensus 161 d~d~dg~Is~~ef~~~l~~ 179 (213)
-.-.+|.++|++|+.++.+
T Consensus 325 ~~~~eGrmdykdFv~FilA 343 (493)
T KOG2562|consen 325 TVKVEGRMDYKDFVDFILA 343 (493)
T ss_pred eeeecCcccHHHHHHHHHH
Confidence 5677889999999999865
No 100
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton]
Probab=96.66 E-value=0.0075 Score=52.01 Aligned_cols=65 Identities=18% Similarity=0.337 Sum_probs=51.2
Q ss_pred HHHHHHHhcCCCCCCcccHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhCCCCCCCcCHHHHHHHHH
Q 028131 108 KIAFAFRLYDLRQTGFIEREELKEMVLALLHESDLILSDDVIETIVDKSFSDADTNGDGKIDPEEWKEFVK 178 (213)
Q Consensus 108 ~~~~~F~~~D~d~~G~I~~~El~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~d~dg~Is~~ef~~~l~ 178 (213)
.++..|...| +++|+|+..|+..++.+. +... --...+.++++....+.|.+|.|++++|+..+.
T Consensus 20 ~l~~kF~~~d-~~~G~v~~~~l~~~f~k~----~~~~-g~~~~eei~~~l~~~~~~~~g~v~fe~f~~~~~ 84 (627)
T KOG0046|consen 20 ELKEKFNKLD-DQKGYVTVYELPDAFKKA----KLPL-GYFVREEIKEILGEVGVDADGRVEFEEFVGIFL 84 (627)
T ss_pred HHHHHHHhhc-CCCCeeehHHhHHHHHHh----cccc-cchhHHHHHHHHhccCCCcCCccCHHHHHHHHH
Confidence 4788999999 999999999999999887 4433 122233344445899999999999999999765
No 101
>PLN02952 phosphoinositide phospholipase C
Probab=96.20 E-value=0.057 Score=48.21 Aligned_cols=115 Identities=14% Similarity=0.195 Sum_probs=75.5
Q ss_pred CCCcccHHHHHHHHhhhCC-CCChHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhC
Q 028131 83 RNGVIEFGEFVRSLGVFHP-HALVEDKIAFAFRLYDLRQTGFIEREELKEMVLALLHESDLILSDDVIETIVDKSFSDAD 161 (213)
Q Consensus 83 ~~~~i~~~ef~~~~~~~~~-~~~~~~~~~~~F~~~D~d~~G~I~~~El~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d 161 (213)
+.|.++|.+|.++...+.. ...++.++..+|..+..++ +.|+.++|..+|...-. ....+.+.+..+++.++....
T Consensus 13 ~~g~l~f~~f~~f~~~~k~~~~~~r~ei~~lf~~~~~~~-~~mt~~~l~~FL~~~Q~--e~~~~~~~~~~i~~~~~~~~~ 89 (599)
T PLN02952 13 DSGSYNYKMFNLFNRKFKITEAEPPDDVKDVFCKFSVGG-GHMGADQLRRFLVLHQD--ELDCTLAEAQRIVEEVINRRH 89 (599)
T ss_pred cCCCcCHHHHHHHHHHhccccCCChHHHHHHHHHHhCCC-CccCHHHHHHHHHHhCC--CcCCCHHHHHHHHHHHHhhcc
Confidence 3578999999988876652 2346788999999997544 78999999999987621 124667777777765544322
Q ss_pred ---CCCCCCcCHHHHHHHHHhChhhHhhcCchhhhhhhhhcCc
Q 028131 162 ---TNGDGKIDPEEWKEFVKKNPSLIKNMTLPYLKDITLAFPS 201 (213)
Q Consensus 162 ---~d~dg~Is~~ef~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 201 (213)
....+.++++.|..++... ++.....-...+|+..-...
T Consensus 90 ~~~~~~~~~l~~~~F~~~l~s~-~~~~p~~~~v~qdm~~Pls~ 131 (599)
T PLN02952 90 HVTRYTRHGLNLDDFFHFLLYD-DLNGPITPQVHHDMTAPLSH 131 (599)
T ss_pred ccccccccCcCHHHHHHHHcCc-cccccccccccccCCCchhh
Confidence 1223469999999999743 22222222234555544443
No 102
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=96.05 E-value=0.012 Score=29.05 Aligned_cols=26 Identities=46% Similarity=0.764 Sum_probs=22.4
Q ss_pred HHHHHhhCCCCCCCcCHHHHHHHHHh
Q 028131 154 DKSFSDADTNGDGKIDPEEWKEFVKK 179 (213)
Q Consensus 154 ~~~f~~~d~d~dg~Is~~ef~~~l~~ 179 (213)
+.+|..+|.+++|.|++.+|..++..
T Consensus 3 ~~~f~~~d~~~~g~i~~~e~~~~~~~ 28 (29)
T smart00054 3 KEAFRLFDKDGDGKIDFEEFKDLLKA 28 (29)
T ss_pred HHHHHHHCCCCCCcEeHHHHHHHHHh
Confidence 45668999999999999999998864
No 103
>KOG4666 consensus Predicted phosphate acyltransferase, contains PlsC domain [Lipid transport and metabolism]
Probab=95.60 E-value=0.041 Score=44.91 Aligned_cols=99 Identities=12% Similarity=0.097 Sum_probs=78.4
Q ss_pred HHHHHHHHHhhcCCCCCCCcCHHHHHHHHh--cccCcchHHHHHHHHHhcCCCCCcccHHHHHHHHhhhCCCCChHHHHH
Q 028131 33 EALYELFKKLSSSIFDDGIIHKEEFQLALF--RNKNKKNLFADRIFDLFDLKRNGVIEFGEFVRSLGVFHPHALVEDKIA 110 (213)
Q Consensus 33 ~~l~~~F~~~d~~~~~~G~l~~~e~~~~l~--~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~ 110 (213)
+.+...|..+|.+ ++|.+++.+-...+. +........++-.|..++...||.+.-.+|..++..... ...-++-
T Consensus 259 d~l~~~f~LFde~--~tg~~D~re~v~~lavlc~p~~t~~iiq~afk~f~v~eDg~~ge~~ls~ilq~~lg--v~~l~v~ 334 (412)
T KOG4666|consen 259 DKLAPTFMLFDEG--TTGNGDYRETVKTLAVLCGPPVTPVIIQYAFKRFSVAEDGISGEHILSLILQVVLG--VEVLRVP 334 (412)
T ss_pred hhhhhhhheecCC--CCCcccHHHHhhhheeeeCCCCcHHHHHHHHHhcccccccccchHHHHHHHHHhcC--cceeecc
Confidence 5677888889988 999999999877662 233345666788999999999999999988888765442 3333467
Q ss_pred HHHHhcCCCCCCcccHHHHHHHHHH
Q 028131 111 FAFRLYDLRQTGFIEREELKEMVLA 135 (213)
Q Consensus 111 ~~F~~~D~d~~G~I~~~El~~~l~~ 135 (213)
..|+.++...+|.|+.++|+.+...
T Consensus 335 ~lf~~i~q~d~~ki~~~~f~~fa~~ 359 (412)
T KOG4666|consen 335 VLFPSIEQKDDPKIYASNFRKFAAT 359 (412)
T ss_pred ccchhhhcccCcceeHHHHHHHHHh
Confidence 8899999999999999999998753
No 104
>KOG4065 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.95 E-value=0.14 Score=35.54 Aligned_cols=34 Identities=12% Similarity=0.212 Sum_probs=25.4
Q ss_pred cCCCCHHHHHHHHHHHHHhhcCCCCCCCcCHHHHHHHH
Q 028131 24 ETPFTVCEVEALYELFKKLSSSIFDDGIIHKEEFQLAL 61 (213)
Q Consensus 24 ~~~ls~~~i~~l~~~F~~~d~~~~~~G~l~~~e~~~~l 61 (213)
...+|+++++ +..|...|-+ ++|.|+--++..++
T Consensus 60 ~a~mtpeqlq--fHYF~MHDld--knn~lDGiEl~kAi 93 (144)
T KOG4065|consen 60 VAKMTPEQLQ--FHYFSMHDLD--KNNFLDGIELLKAI 93 (144)
T ss_pred hhhCCHHHHh--hhhhhhhccC--cCCcchHHHHHHHH
Confidence 4467777765 3457788887 89999988888776
No 105
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=94.90 E-value=0.31 Score=43.10 Aligned_cols=153 Identities=17% Similarity=0.166 Sum_probs=97.9
Q ss_pred CCCCHHHHHHHHHHHHHhhcCCCCCCCcCHHHHHHHH-hcccCc-chHHHHHHHHHhcC---C--CCCcccHHHHHHHHh
Q 028131 25 TPFTVCEVEALYELFKKLSSSIFDDGIIHKEEFQLAL-FRNKNK-KNLFADRIFDLFDL---K--RNGVIEFGEFVRSLG 97 (213)
Q Consensus 25 ~~ls~~~i~~l~~~F~~~d~~~~~~G~l~~~e~~~~l-~~~~~~-~~~~~~~~~~~~d~---~--~~~~i~~~ef~~~~~ 97 (213)
..+.+.-++.|+.+|...|.+ .+|.++-.|+...= .+.+.. ...++..+....+. + .+..++..-|+-+..
T Consensus 187 qelkp~~v~al~RIFki~D~d--~D~~Lsd~Eln~fQ~~CF~~pl~p~~l~~vk~vv~e~~p~gv~~~~ltl~GFLfL~~ 264 (625)
T KOG1707|consen 187 QELKPRCVKALKRIFKISDSD--NDGALSDAELNDFQKKCFNTPLDPQELEDVKNVVQEICPDGVYERGLTLPGFLFLNT 264 (625)
T ss_pred ccccHHHHHHHHHHHhhhccc--cccccchhhhhHHHHHhcCCCCCHHHHHHHHHHHHhhcCchhhhccccccchHHHHH
Confidence 356778899999999999999 99999999987432 222222 22233333333322 2 245577778888776
Q ss_pred hhCCCCChHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHhhhcC--CCCCHHHHHHHHHHHHHhhCCCCCCCcCHHHHHH
Q 028131 98 VFHPHALVEDKIAFAFRLYDLRQTGFIEREELKEMVLALLHESD--LILSDDVIETIVDKSFSDADTNGDGKIDPEEWKE 175 (213)
Q Consensus 98 ~~~~~~~~~~~~~~~F~~~D~d~~G~I~~~El~~~l~~~~~~~~--~~~~~~~~~~~~~~~f~~~d~d~dg~Is~~ef~~ 175 (213)
.+. .....+.-+.+.+.|--+.+=.++.+=+..-+. ...+ .++++.-+ ..+..+|..+|.|+||.++-.|+..
T Consensus 265 lfi-ergr~EttW~iLR~fgY~DsleL~~~~l~p~~~---~~p~~s~ELs~~~~-~Fl~~~f~~~D~d~Dg~L~p~El~~ 339 (625)
T KOG1707|consen 265 LFI-ERGRHETTWTILRKFGYTDSLELTDEYLPPRLK---VPPDQSVELSPKGY-RFLVDVFEKFDRDNDGALSPEELKD 339 (625)
T ss_pred HHH-HhccccchhhhhhhcCCcchhhhhhhhcCcccc---CCCCcceeccHHHH-HHHHHHHHhccCCCCCCcCHHHHHH
Confidence 665 345556677888888766544444333321110 1112 23334444 4457889999999999999999999
Q ss_pred HHHhChhhH
Q 028131 176 FVKKNPSLI 184 (213)
Q Consensus 176 ~l~~~~~~~ 184 (213)
+....|..-
T Consensus 340 LF~~~P~~p 348 (625)
T KOG1707|consen 340 LFSTAPGSP 348 (625)
T ss_pred HhhhCCCCC
Confidence 998877554
No 106
>KOG4578 consensus Uncharacterized conserved protein, contains KAZAL and TY domains [General function prediction only]
Probab=94.83 E-value=0.021 Score=46.51 Aligned_cols=68 Identities=26% Similarity=0.333 Sum_probs=54.4
Q ss_pred HHHHHHHhcCCCCCCcccHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhCCCCCCCcCHHHHHHHHHhChh
Q 028131 108 KIAFAFRLYDLRQTGFIEREELKEMVLALLHESDLILSDDVIETIVDKSFSDADTNGDGKIDPEEWKEFVKKNPS 182 (213)
Q Consensus 108 ~~~~~F~~~D~d~~G~I~~~El~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~d~dg~Is~~ef~~~l~~~~~ 182 (213)
.+..-|..+|.|.++.|...|++-|=.-+. .........+.+|..+|.|+|..||+.||+.++-..++
T Consensus 334 vv~w~F~qLdkN~nn~i~rrEwKpFK~~l~-------k~s~~rkC~rk~~~yCDlNkDKkISl~Ew~~CL~~~~~ 401 (421)
T KOG4578|consen 334 VVHWYFNQLDKNSNNDIERREWKPFKRVLL-------KKSKPRKCSRKFFKYCDLNKDKKISLDEWRGCLGVEKE 401 (421)
T ss_pred eeeeeeeeecccccCccchhhcchHHHHHH-------hhccHHHHhhhcchhcccCCCceecHHHHhhhhccccc
Confidence 578899999999999999999877654442 22234455677789999999999999999999977655
No 107
>KOG0035 consensus Ca2+-binding actin-bundling protein (actinin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=94.69 E-value=0.23 Score=46.00 Aligned_cols=104 Identities=18% Similarity=0.132 Sum_probs=80.0
Q ss_pred CCCCHHHHHHHHHHHHHhhcCCCCCCCcCHHHHHHHHhcccCcchH---HHHHHHHH---hcCCCCCcccHHHHHHHHhh
Q 028131 25 TPFTVCEVEALYELFKKLSSSIFDDGIIHKEEFQLALFRNKNKKNL---FADRIFDL---FDLKRNGVIEFGEFVRSLGV 98 (213)
Q Consensus 25 ~~ls~~~i~~l~~~F~~~d~~~~~~G~l~~~e~~~~l~~~~~~~~~---~~~~~~~~---~d~~~~~~i~~~ef~~~~~~ 98 (213)
...++....++...|..+++. ..|.++.++++.+|..++..... -+..+|+. .|.+..|.+++.+|...+..
T Consensus 739 k~~sQ~v~~ElrAle~~~~~~--d~~aa~~e~~~~~Lmslg~~~e~ee~~~~e~~~lvn~~n~l~~~qv~~~e~~ddl~R 816 (890)
T KOG0035|consen 739 KGTSQYVLDELRALENEQDKI--DGGAASPEELLRCLMSLGYNTEEEEQGIAEWFRLVNKKNPLIQGQVQLLEFEDDLER 816 (890)
T ss_pred cchhHHHHHHHHHHHhHHHHh--hcccCCHHHHHHHHHhcCcccchhHHHHHHHHHHHhccCcccccceeHHHHHhHhhh
Confidence 346677777889999999988 88999999999999777654332 23444444 45555688999999999987
Q ss_pred hCCCCChHHHHHHHHHhcCCCCCCcccHHHHHH
Q 028131 99 FHPHALVEDKIAFAFRLYDLRQTGFIEREELKE 131 (213)
Q Consensus 99 ~~~~~~~~~~~~~~F~~~D~d~~G~I~~~El~~ 131 (213)
.....+...++..+|+.+-++.. +|..+||+.
T Consensus 817 ~~e~l~~~~r~i~s~~d~~ktk~-~lL~eEL~~ 848 (890)
T KOG0035|consen 817 EYEDLDTELRAILAFEDWAKTKA-YLLLEELVR 848 (890)
T ss_pred hhhhhcHHHHHHHHHHHHHcchh-HHHHHHHHh
Confidence 66666777888889988877665 899999887
No 108
>KOG1955 consensus Ral-GTPase effector RALBP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.61 E-value=0.11 Score=44.83 Aligned_cols=77 Identities=18% Similarity=0.259 Sum_probs=63.7
Q ss_pred HhhhhcCCCCHHHHHHHHHHHHHhhcCCCCCCCcCHHHHHHHHhcccCcchHHHHHHHHHhcCCCCCcccHHHHHHHHhh
Q 028131 19 TVLAAETPFTVCEVEALYELFKKLSSSIFDDGIIHKEEFQLALFRNKNKKNLFADRIFDLFDLKRNGVIEFGEFVRSLGV 98 (213)
Q Consensus 19 ~~l~~~~~ls~~~i~~l~~~F~~~d~~~~~~G~l~~~e~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~ 98 (213)
..+...++++.++-......|.....+ .+|.|+-.--+.++.... ..-.++..||++.|.+.+|.+++.||++.+..
T Consensus 217 S~~d~pw~IT~EQReYYvnQFrtvQpD--p~gfisGsaAknFFtKSk-lpi~ELshIWeLsD~d~DGALtL~EFcAAfHL 293 (737)
T KOG1955|consen 217 SELDTPWQITPEQREYYVNQFRTVQPD--PHGFISGSAAKNFFTKSK-LPIEELSHIWELSDVDRDGALTLSEFCAAFHL 293 (737)
T ss_pred cccCCccccCHHHHHHHHhhhhcccCC--cccccccHHHHhhhhhcc-CchHHHHHHHhhcccCccccccHHHHHhhHhh
Confidence 345567789999999999999999999 999999998887775443 34445689999999999999999999998753
No 109
>KOG3866 consensus DNA-binding protein of the nucleobindin family [General function prediction only]
Probab=94.05 E-value=0.19 Score=40.87 Aligned_cols=92 Identities=18% Similarity=0.165 Sum_probs=62.7
Q ss_pred cHHHHHHHHhhhCCCCChHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHhhh-cCCCCCHHH-------HHHHHHHHHHh
Q 028131 88 EFGEFVRSLGVFHPHALVEDKIAFAFRLYDLRQTGFIEREELKEMVLALLHE-SDLILSDDV-------IETIVDKSFSD 159 (213)
Q Consensus 88 ~~~ef~~~~~~~~~~~~~~~~~~~~F~~~D~d~~G~I~~~El~~~l~~~~~~-~~~~~~~~~-------~~~~~~~~f~~ 159 (213)
+-..+..+|..........-.-+..|.+.|.|+||+++-.||.+.+..-++. +.+...+.. .-.|-..++..
T Consensus 225 SkdQLkEVWEE~DgLdpn~fdPKTFF~LHD~NsDGfldeqELEaLFtkELEKvYdpkNeeDDM~EmeEErlRMREHVMk~ 304 (442)
T KOG3866|consen 225 SKDQLKEVWEESDGLDPNQFDPKTFFALHDLNSDGFLDEQELEALFTKELEKVYDPKNEEDDMKEMEEERLRMREHVMKQ 304 (442)
T ss_pred cHHHHHHHHHHhcCCCcccCCcchheeeeccCCcccccHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHh
Confidence 4455555554333222222235688999999999999999999998765543 344333322 22344667889
Q ss_pred hCCCCCCCcCHHHHHHHHHh
Q 028131 160 ADTNGDGKIDPEEWKEFVKK 179 (213)
Q Consensus 160 ~d~d~dg~Is~~ef~~~l~~ 179 (213)
.|.|.|.-||.++|++.-.+
T Consensus 305 vDtNqDRlvtleEFL~~t~~ 324 (442)
T KOG3866|consen 305 VDTNQDRLVTLEEFLNDTDN 324 (442)
T ss_pred cccchhhhhhHHHHHhhhhh
Confidence 99999999999999998754
No 110
>KOG0039 consensus Ferric reductase, NADH/NADPH oxidase and related proteins [Inorganic ion transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=93.93 E-value=0.16 Score=46.23 Aligned_cols=97 Identities=23% Similarity=0.378 Sum_probs=80.7
Q ss_pred CCcccHHHHHHHHhhhCCCCChHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhCCC
Q 028131 84 NGVIEFGEFVRSLGVFHPHALVEDKIAFAFRLYDLRQTGFIEREELKEMVLALLHESDLILSDDVIETIVDKSFSDADTN 163 (213)
Q Consensus 84 ~~~i~~~ef~~~~~~~~~~~~~~~~~~~~F~~~D~d~~G~I~~~El~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~d 163 (213)
++ +++++|. ......+.+++..|..+|. ++|.++.+++..++...+..............+...++...|.+
T Consensus 2 ~~-~~~~~~~------~~~~~~d~~l~~~f~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (646)
T KOG0039|consen 2 EG-ISFQELK------ITDCSYDDKLQTFFDMYDK-GDGKLTEEEVRELIMSSISANWLSLIKKQTEEYAALIMEELDPD 73 (646)
T ss_pred CC-cchhhhc------ccCCChhHHHHHHHHHHhh-hcCCccHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHhhhhcccc
Confidence 45 8888888 2356788999999999998 99999999999999988766555565677778888888999999
Q ss_pred CCCCcCHHHHHHHHHhChhhHhhcC
Q 028131 164 GDGKIDPEEWKEFVKKNPSLIKNMT 188 (213)
Q Consensus 164 ~dg~Is~~ef~~~l~~~~~~~~~~~ 188 (213)
+.|.+.++++..++...|.......
T Consensus 74 ~~~y~~~~~~~~ll~~~~~~~~~~~ 98 (646)
T KOG0039|consen 74 HKGYITNEDLEILLLQIPTLLFAIL 98 (646)
T ss_pred ccceeeecchhHHHHhchHHHHHHH
Confidence 9999999999999998887666543
No 111
>KOG3555 consensus Ca2+-binding proteoglycan Testican [General function prediction only]
Probab=93.81 E-value=0.082 Score=43.49 Aligned_cols=63 Identities=25% Similarity=0.465 Sum_probs=51.9
Q ss_pred hHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhCCCCCCCcCHHHHHHHHHh
Q 028131 105 VEDKIAFAFRLYDLRQTGFIEREELKEMVLALLHESDLILSDDVIETIVDKSFSDADTNGDGKIDPEEWKEFVKK 179 (213)
Q Consensus 105 ~~~~~~~~F~~~D~d~~G~I~~~El~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~d~dg~Is~~ef~~~l~~ 179 (213)
-...+-.+|..+|.|.||.++..||+.+-.. -. +..++.+|..+|...||.||-.||..++..
T Consensus 248 CKds~gWMFnklD~N~Dl~Ld~sEl~~I~ld--------kn----E~CikpFfnsCD~~kDg~iS~~EWC~CF~k 310 (434)
T KOG3555|consen 248 CKDSLGWMFNKLDTNYDLLLDQSELRAIELD--------KN----EACIKPFFNSCDTYKDGSISTNEWCYCFQK 310 (434)
T ss_pred hhhhhhhhhhccccccccccCHHHhhhhhcc--------Cc----hhHHHHHHhhhcccccCccccchhhhhhcc
Confidence 3577999999999999999999999986421 11 234677779999999999999999999864
No 112
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=93.71 E-value=2 Score=32.10 Aligned_cols=132 Identities=14% Similarity=0.070 Sum_probs=72.5
Q ss_pred HHHHHhhcCCCCCCCcCHHHHHHHHhcccCcchHHH--HHHHHHh-cC-CCCCccc---HHHHHHHHhhhC---------
Q 028131 37 ELFKKLSSSIFDDGIIHKEEFQLALFRNKNKKNLFA--DRIFDLF-DL-KRNGVIE---FGEFVRSLGVFH--------- 100 (213)
Q Consensus 37 ~~F~~~d~~~~~~G~l~~~e~~~~l~~~~~~~~~~~--~~~~~~~-d~-~~~~~i~---~~ef~~~~~~~~--------- 100 (213)
+-..-+|.| ++|.|.+-|-...++.++...-.-+ .-+.... .. ...+-+. |.=++.-+..-.
T Consensus 11 qHvaFFDrd--~DGiI~P~dTy~GFraLGf~~~~s~~aa~~I~~~lSy~T~~~w~p~P~f~Iyi~nIhk~kHGSDSg~YD 88 (174)
T PF05042_consen 11 QHVAFFDRD--KDGIIYPWDTYQGFRALGFGILLSLLAAFIIHGALSYPTQPSWIPDPFFRIYIKNIHKGKHGSDSGAYD 88 (174)
T ss_pred hhhceeCCC--CCeeECHHHHHHHHHHhCCCHHHHHHHHHHHHcccCCccCCCCCCCCceeEEeecccccccCCCccccc
Confidence 333447888 9999999998888877775432211 1111111 00 0011000 000010010000
Q ss_pred -CCCChHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHhhhcCCCCCH-----HHHHHHHHHHHHhhCCCCCCCcCHHHHH
Q 028131 101 -PHALVEDKIAFAFRLYDLRQTGFIEREELKEMVLALLHESDLILSD-----DVIETIVDKSFSDADTNGDGKIDPEEWK 174 (213)
Q Consensus 101 -~~~~~~~~~~~~F~~~D~d~~G~I~~~El~~~l~~~~~~~~~~~~~-----~~~~~~~~~~f~~~d~d~dg~Is~~ef~ 174 (213)
...-.+++++.+|..++..+.+.++..|+.+++..- .....+ ..++ +..++.. -.+.+|.++.++.+
T Consensus 89 ~eGrFvp~kFe~iF~kya~~~~d~LT~~E~~~m~~~n----r~~~D~~GW~a~~~E--W~~~y~L-~~d~dG~l~Ke~iR 161 (174)
T PF05042_consen 89 TEGRFVPQKFEEIFSKYAKTGPDALTLRELWRMLKGN----RNANDPFGWFAAFFE--WGALYIL-AKDKDGFLSKEDIR 161 (174)
T ss_pred cCCcCCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHhc----cccCCcchhhhhhhH--HHHHHHH-HcCcCCcEeHHHHh
Confidence 012346899999999999999999999999999864 221221 1111 1222323 25778999988887
Q ss_pred HHH
Q 028131 175 EFV 177 (213)
Q Consensus 175 ~~l 177 (213)
.+.
T Consensus 162 ~vY 164 (174)
T PF05042_consen 162 GVY 164 (174)
T ss_pred hhc
Confidence 765
No 113
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=93.58 E-value=1.7 Score=40.43 Aligned_cols=148 Identities=15% Similarity=0.265 Sum_probs=90.8
Q ss_pred CCCCcCHHHHHHHHhcccCcchHHHHHHHHHhcC--CCCC-----cccHHHHHHHHhhhCCCCChHHHHHHHHHhcCCCC
Q 028131 48 DDGIIHKEEFQLALFRNKNKKNLFADRIFDLFDL--KRNG-----VIEFGEFVRSLGVFHPHALVEDKIAFAFRLYDLRQ 120 (213)
Q Consensus 48 ~~G~l~~~e~~~~l~~~~~~~~~~~~~~~~~~d~--~~~~-----~i~~~ef~~~~~~~~~~~~~~~~~~~~F~~~D~d~ 120 (213)
..|.|....+.+.+.... .+..++.......- +.+. ..+++.|..++..+|. +.++..+|..+..++
T Consensus 161 ~~grip~knI~k~F~~~k--~~KrVe~al~~~gLp~~k~dsI~~d~f~~e~f~~~l~klcp----R~eie~iF~ki~~~~ 234 (1189)
T KOG1265|consen 161 FEGRIPVKNIIKTFSADK--KEKRVEKALEACGLPSGKNDSIEPDDFTLEKFYRLLNKLCP----RPEIEEIFRKISGKK 234 (1189)
T ss_pred ccccccHHHHHHHhhcCC--chhHHHHHHHhcCCCCCCcCccChhhccHHHHHHHHHhcCC----chhHHHHHHHhccCC
Confidence 677777777766653321 11223333333322 1222 2466777777777773 456999999999999
Q ss_pred CCcccHHHHHHHHHHHhhh------cCCCCCHHHHHHHHHHHHHhhCCCCCCCcCHHHHHHHHHhChhhHhhc-Cchhhh
Q 028131 121 TGFIEREELKEMVLALLHE------SDLILSDDVIETIVDKSFSDADTNGDGKIDPEEWKEFVKKNPSLIKNM-TLPYLK 193 (213)
Q Consensus 121 ~G~I~~~El~~~l~~~~~~------~~~~~~~~~~~~~~~~~f~~~d~d~dg~Is~~ef~~~l~~~~~~~~~~-~~~~~~ 193 (213)
.-++|.++|..+|..-.+. +=+...+..+..+|+..--.-+.-..|.++-+.|++++.....-.... .+.-++
T Consensus 235 kpylT~~ql~dfln~~QrDpRLNeilfp~~~~~r~~~liekyEp~~~~a~~gqms~dgf~ryl~gdEn~i~a~~~l~l~~ 314 (1189)
T KOG1265|consen 235 KPYLTKEQLVDFLNKKQRDPRLNEILFPPADPRRIQSLIEKYEPNSDNAEKGQMSTDGFVRYLMGDENAIVALDKLDLVT 314 (1189)
T ss_pred CccccHHHHHHHHhhhccCcchhhhhcCCCCHHHHHHHHHHcCCchhhhhccccchhhhHHHhhCCccccccHHHHHhhh
Confidence 9999999999999864322 235666778888884332223333457899999999998732222222 222355
Q ss_pred hhhhhcCc
Q 028131 194 DITLAFPS 201 (213)
Q Consensus 194 ~~~~~~~~ 201 (213)
||+.-...
T Consensus 315 dM~qPl~h 322 (1189)
T KOG1265|consen 315 DMDQPLSH 322 (1189)
T ss_pred hhccchhh
Confidence 66544443
No 114
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=93.33 E-value=0.77 Score=41.77 Aligned_cols=68 Identities=29% Similarity=0.383 Sum_probs=58.8
Q ss_pred chHHHHHHHHHhcCCCCCcccHHHHHHHHhhhCCCCChHHHHHHHHHhcCCCCCCcccHHHHHHHHHHH
Q 028131 68 KNLFADRIFDLFDLKRNGVIEFGEFVRSLGVFHPHALVEDKIAFAFRLYDLRQTGFIEREELKEMVLAL 136 (213)
Q Consensus 68 ~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~F~~~D~d~~G~I~~~El~~~l~~~ 136 (213)
...|+..+|...|++++|.+++.+-..++..+- .......+...|+..|..++|.+..++++.+....
T Consensus 134 ~~~wi~~~~~~ad~~~~~~~~~~~~~~~~~~~n-~~l~~~~~~~~f~e~~~~~~~k~~~~~~~~~~~~~ 201 (746)
T KOG0169|consen 134 REHWIHSIFQEADKNKNGHMSFDEVLDLLKQLN-VQLSESKARRLFKESDNSQTGKLEEEEFVKFRKEL 201 (746)
T ss_pred HHHHHHHHHHHHccccccccchhhHHHHHHHHH-HhhhHHHHHHHHHHHHhhccceehHHHHHHHHHhh
Confidence 466789999999999999999999998886655 45667889999999999999999999999988765
No 115
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=93.30 E-value=0.24 Score=32.20 Aligned_cols=62 Identities=16% Similarity=0.252 Sum_probs=42.8
Q ss_pred HHHHHHHhcCCCCCcccHHHHHHHHhhhCCC-CChHHHHHHHHHhcCCC----CCCcccHHHHHHHHH
Q 028131 72 ADRIFDLFDLKRNGVIEFGEFVRSLGVFHPH-ALVEDKIAFAFRLYDLR----QTGFIEREELKEMVL 134 (213)
Q Consensus 72 ~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~-~~~~~~~~~~F~~~D~d----~~G~I~~~El~~~l~ 134 (213)
+..+|..+.. +.+.++.++|..++...++. ....+.++.+++.|..+ ..+.++.++|..+|.
T Consensus 2 i~~if~~ys~-~~~~mt~~~f~~FL~~eQ~~~~~~~~~~~~li~~~~~~~~~~~~~~lt~~gF~~fL~ 68 (83)
T PF09279_consen 2 IEEIFRKYSS-DKEYMTAEEFRRFLREEQGEPRLTDEQAKELIEKFEPDERNRQKGQLTLEGFTRFLF 68 (83)
T ss_dssp HHHHHHHHCT-TSSSEEHHHHHHHHHHTSS-TTSSHHHHHHHHHHHHHHHHHHCTTEEEHHHHHHHHH
T ss_pred HHHHHHHHhC-CCCcCCHHHHHHHHHHHhccccCcHHHHHHHHHHHccchhhcccCCcCHHHHHHHHC
Confidence 4567777754 56678888888887665543 23467777777777543 468889998888884
No 116
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=91.82 E-value=0.37 Score=43.92 Aligned_cols=70 Identities=17% Similarity=0.218 Sum_probs=55.2
Q ss_pred CCCCHHHHHHHHHHHHHhhcCCCCCCCcCHHHHHHHHhcccCcchHHHHHHHHHhcCCCCCcccHHHHHHHHh
Q 028131 25 TPFTVCEVEALYELFKKLSSSIFDDGIIHKEEFQLALFRNKNKKNLFADRIFDLFDLKRNGVIEFGEFVRSLG 97 (213)
Q Consensus 25 ~~ls~~~i~~l~~~F~~~d~~~~~~G~l~~~e~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~ 97 (213)
+......-.....+|+.+|+. .+|+|+...-+.+|...+. +...+..++.+.|.|+||.++-+||+..+.
T Consensus 187 WAVp~~~klKY~QlFNa~Dkt--rsG~Lsg~qaR~aL~qS~L-pq~~LA~IW~LsDvd~DGkL~~dEfilam~ 256 (1118)
T KOG1029|consen 187 WAVPQHNKLKYRQLFNALDKT--RSGYLSGQQARSALGQSGL-PQNQLAHIWTLSDVDGDGKLSADEFILAMH 256 (1118)
T ss_pred ccccchhhhHHHHHhhhcccc--cccccccHHHHHHHHhcCC-chhhHhhheeeeccCCCCcccHHHHHHHHH
Confidence 334444445567899999999 9999999999988865543 334468899999999999999999987754
No 117
>PF09068 EF-hand_2: EF hand; InterPro: IPR015153 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=91.62 E-value=1.3 Score=31.51 Aligned_cols=99 Identities=14% Similarity=0.250 Sum_probs=53.1
Q ss_pred hHhhhhcCCCCHHHHHHHHHHHHHhhcCCCCCCCcCHHHHHHHHhcccCcchHHHHHHHHHhcCCCCCcccHHHH-HHHH
Q 028131 18 PTVLAAETPFTVCEVEALYELFKKLSSSIFDDGIIHKEEFQLALFRNKNKKNLFADRIFDLFDLKRNGVIEFGEF-VRSL 96 (213)
Q Consensus 18 ~~~l~~~~~ls~~~i~~l~~~F~~~d~~~~~~G~l~~~e~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef-~~~~ 96 (213)
++.+++...+..=.+..+.++|....-+...+..++..++...| ..+|...........+.... ....
T Consensus 26 LR~lQk~~~l~lv~l~~v~~~f~~~~l~~~~d~~l~v~~l~~~L-----------~~iy~~l~~~~p~~~~i~~~~v~~a 94 (127)
T PF09068_consen 26 LRFLQKRLCLDLVDLSNVIEAFREHGLNQSNDSSLSVSQLETLL-----------SSIYEFLNKRLPTLHQIPSRPVDLA 94 (127)
T ss_dssp HHHHHHHTTGGG--HHHHHHHHHHTT---T-TSEEEHHHHHHHH-----------HHHHHHHHHHSTTS--HH-----HH
T ss_pred HHHHHHHHhheeeeHHHHHHHHHHcCCCcccCCCCCHHHHHHHH-----------HHHHHHHHHHCCCCCCCCchhHHHH
Confidence 66777777777777777788887765542223457777777665 44453332222222221100 0111
Q ss_pred hhhCCCCChHHHHHHHHHhcCCCCCCcccHHHHHHHHHH
Q 028131 97 GVFHPHALVEDKIAFAFRLYDLRQTGFIEREELKEMVLA 135 (213)
Q Consensus 97 ~~~~~~~~~~~~~~~~F~~~D~d~~G~I~~~El~~~l~~ 135 (213)
.+--+.++...||.+++|.|..-.++..+..
T Consensus 95 --------~~L~ln~Ll~vyD~~rtG~I~vls~KvaL~~ 125 (127)
T PF09068_consen 95 --------VDLLLNWLLNVYDSQRTGKIRVLSFKVALIT 125 (127)
T ss_dssp --------HHHHHHHHHHHH-TT--SEEEHHHHHHHHHH
T ss_pred --------HHHHHHHHHHHhCCCCCCeeehhHHHHHHHH
Confidence 1122788889999999999999888877643
No 118
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=91.45 E-value=0.8 Score=34.21 Aligned_cols=35 Identities=17% Similarity=0.208 Sum_probs=27.2
Q ss_pred HHHHHhhCCCCCCCcCHHHHHHHHHhChhhHhhcC
Q 028131 154 DKSFSDADTNGDGKIDPEEWKEFVKKNPSLIKNMT 188 (213)
Q Consensus 154 ~~~f~~~d~d~dg~Is~~ef~~~l~~~~~~~~~~~ 188 (213)
+++|...+..+.+.+|+.|..+++..+.+....++
T Consensus 99 e~iF~kya~~~~d~LT~~E~~~m~~~nr~~~D~~G 133 (174)
T PF05042_consen 99 EEIFSKYAKTGPDALTLRELWRMLKGNRNANDPFG 133 (174)
T ss_pred HHHHHHhCCCCCCCcCHHHHHHHHHhccccCCcch
Confidence 44558888888899999999999998776555443
No 119
>KOG1955 consensus Ral-GTPase effector RALBP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.33 E-value=0.64 Score=40.33 Aligned_cols=63 Identities=19% Similarity=0.216 Sum_probs=53.2
Q ss_pred HHHHHHHHhcCCCCCCcccHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhCCCCCCCcCHHHHHHHHHh
Q 028131 107 DKIAFAFRLYDLRQTGFIEREELKEMVLALLHESDLILSDDVIETIVDKSFSDADTNGDGKIDPEEWKEFVKK 179 (213)
Q Consensus 107 ~~~~~~F~~~D~d~~G~I~~~El~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~d~dg~Is~~ef~~~l~~ 179 (213)
+-+..-|+.+-.|-.|+|+-.--+.|+.+. .++-+++..|+ +..|.|.||.++..||++.+..
T Consensus 231 eYYvnQFrtvQpDp~gfisGsaAknFFtKS------klpi~ELshIW----eLsD~d~DGALtL~EFcAAfHL 293 (737)
T KOG1955|consen 231 EYYVNQFRTVQPDPHGFISGSAAKNFFTKS------KLPIEELSHIW----ELSDVDRDGALTLSEFCAAFHL 293 (737)
T ss_pred HHHHhhhhcccCCcccccccHHHHhhhhhc------cCchHHHHHHH----hhcccCccccccHHHHHhhHhh
Confidence 457778899999999999999999888754 77777776666 8999999999999999999853
No 120
>KOG0998 consensus Synaptic vesicle protein EHS-1 and related EH domain proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=91.28 E-value=0.22 Score=46.61 Aligned_cols=144 Identities=20% Similarity=0.306 Sum_probs=108.3
Q ss_pred cCCCCHHHHHHHHHHHHHhhcCCCCCCCcCHHHHHHHHhcccCcchHHHHHHHHHhcCCCCCcccHHHHHHHHhhhCC--
Q 028131 24 ETPFTVCEVEALYELFKKLSSSIFDDGIIHKEEFQLALFRNKNKKNLFADRIFDLFDLKRNGVIEFGEFVRSLGVFHP-- 101 (213)
Q Consensus 24 ~~~ls~~~i~~l~~~F~~~d~~~~~~G~l~~~e~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~-- 101 (213)
...++.++......+|..+.. .+|.++....+-+|.... .......+++...|.+.+|.+++.+|...+.....
T Consensus 120 ~p~~~~qe~aky~q~f~s~~p---~~g~~sg~~~~pil~~s~-Lp~~~l~~iw~l~d~d~~g~Ld~~ef~~am~l~~~~l 195 (847)
T KOG0998|consen 120 VPAITPQEQAKYDQIFRSLSP---SNGLLSGDKAKPILLNSK-LPSDVLGRIWELSDIDKDGNLDRDEFAVAMHLINDLL 195 (847)
T ss_pred CCCCCHHHHHHHHHHHhccCC---CCCccccchhhhhhhcCC-CChhhhccccccccccccCCCChhhhhhhhhHHHHHh
Confidence 345788888888889999987 589999999887774443 34445578899999999999999999776541100
Q ss_pred C-------------------------------------------------------------------------------
Q 028131 102 H------------------------------------------------------------------------------- 102 (213)
Q Consensus 102 ~------------------------------------------------------------------------------- 102 (213)
.
T Consensus 196 ~~~~~p~P~~~p~~lIpps~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~~~~~~s~~~~~~~~~~q~~~s~~~ 275 (847)
T KOG0998|consen 196 NGNSEPVPSRLPPSLIPPSKSELSANSSSKAIPFSQPFLASMASPTTLSSLVDLSALNSNPSLSSLSLASSMQLIVSWSP 275 (847)
T ss_pred hcccCCCCccCCcccCCcchhcccccCcccccccccccccccccccccccccchhcccCCccccccccccccccccccCc
Confidence 0
Q ss_pred ---CChHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhCCCCCCCcCHHHHHHHHHh
Q 028131 103 ---ALVEDKIAFAFRLYDLRQTGFIEREELKEMVLALLHESDLILSDDVIETIVDKSFSDADTNGDGKIDPEEWKEFVKK 179 (213)
Q Consensus 103 ---~~~~~~~~~~F~~~D~d~~G~I~~~El~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~d~dg~Is~~ef~~~l~~ 179 (213)
......+..+|...|.+.+|.|+..+.+..+.. ..++...+...+ ...|..+.|.|++.+|.-.+..
T Consensus 276 ~vsp~d~~~~~~if~q~d~~~dG~I~s~~~~~~f~~------~gl~~~~l~~~w----~l~d~~n~~~ls~~ef~~~~~~ 345 (847)
T KOG0998|consen 276 KVSPSDKQKYSKIFSQVDKDNDGSISSNEARNIFLP------FGLSKPRLAHVW----LLADTQNTGTLSKDEFALAMHL 345 (847)
T ss_pred ccChHHHHHHHHHHHhccccCCCccccccccccccc------CCCChhhhhhhh----hhcchhccCcccccccchhhhh
Confidence 001245677899999999999999999988854 466666665555 7999999999999988877654
Q ss_pred Ch
Q 028131 180 NP 181 (213)
Q Consensus 180 ~~ 181 (213)
..
T Consensus 346 ~~ 347 (847)
T KOG0998|consen 346 LE 347 (847)
T ss_pred hh
Confidence 43
No 121
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=91.00 E-value=0.53 Score=41.56 Aligned_cols=77 Identities=13% Similarity=0.076 Sum_probs=65.7
Q ss_pred hcCCCCHHHHHHHHHHHHHhhcCCCCCCCcCHHHHHHHHhccc-CcchHHHHHHHHHhcCCCCCcccHHHHHHHHhhhCC
Q 028131 23 AETPFTVCEVEALYELFKKLSSSIFDDGIIHKEEFQLALFRNK-NKKNLFADRIFDLFDLKRNGVIEFGEFVRSLGVFHP 101 (213)
Q Consensus 23 ~~~~ls~~~i~~l~~~F~~~d~~~~~~G~l~~~e~~~~l~~~~-~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~ 101 (213)
..-.+++.+++..+.+|..+|.+ +.|+++-++..+.|.... ........++.+..+.+.+|.+...+|.++......
T Consensus 583 ~~i~~~~~~~~~~~~rf~~lD~~--k~~~~~i~~v~~vlk~~~~~~d~~~~~~~l~ea~~~~~g~v~l~e~~q~~s~~~~ 660 (680)
T KOG0042|consen 583 IPIKLTPEDFLRRKTRFAFLDAD--KKAYQAIADVLKVLKSENVGWDEDRLHEELQEADENLNGFVELREFLQLMSAIKN 660 (680)
T ss_pred cccccCHHHHHHHHHHHHhhcch--HHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcceeeHHHHHHHHHHHhc
Confidence 34468999999999999999998 899999999999997766 556677788888998888999999999999876663
No 122
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=89.58 E-value=1 Score=40.27 Aligned_cols=78 Identities=23% Similarity=0.326 Sum_probs=53.7
Q ss_pred ccHHHHHHHHhhhCCCCChHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhCCCCCC
Q 028131 87 IEFGEFVRSLGVFHPHALVEDKIAFAFRLYDLRQTGFIEREELKEMVLALLHESDLILSDDVIETIVDKSFSDADTNGDG 166 (213)
Q Consensus 87 i~~~ef~~~~~~~~~~~~~~~~~~~~F~~~D~d~~G~I~~~El~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~d~dg 166 (213)
+++..|+..+..+..-......+..+|+.+|.+++|.|++.+|..-|..+. ..+.. +-++-+|...|++.+
T Consensus 535 i~~~~f~~~f~~l~pw~~s~~~~~rlF~l~D~s~~g~Ltf~~lv~gL~~l~-------~~~~~-ek~~l~y~lh~~p~~- 605 (671)
T KOG4347|consen 535 IDYAQFLEVFRELLPWAVSLIFLERLFRLLDDSMTGLLTFKDLVSGLSILK-------AGDAL-EKLKLLYKLHDPPAD- 605 (671)
T ss_pred HHHhhHHHHhhccCchhHHHHHHHHHHHhcccCCcceeEHHHHHHHHHHHH-------hhhHH-HHHHHHHhhccCCcc-
Confidence 445555555544443233446788999999999999999999999998762 22222 234577788888887
Q ss_pred CcCHHHH
Q 028131 167 KIDPEEW 173 (213)
Q Consensus 167 ~Is~~ef 173 (213)
....++-
T Consensus 606 ~~d~e~~ 612 (671)
T KOG4347|consen 606 ELDREEV 612 (671)
T ss_pred ccccccc
Confidence 6666655
No 123
>KOG0035 consensus Ca2+-binding actin-bundling protein (actinin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=88.57 E-value=1.1 Score=41.89 Aligned_cols=71 Identities=13% Similarity=0.076 Sum_probs=59.9
Q ss_pred HHHHHHHHhcCCCCCCcccHHHHHHHHHHHhhhcCCCCCH-HHHHHHHHHHHHhhCCCCCCCcCHHHHHHHHHhCh
Q 028131 107 DKIAFAFRLYDLRQTGFIEREELKEMVLALLHESDLILSD-DVIETIVDKSFSDADTNGDGKIDPEEWKEFVKKNP 181 (213)
Q Consensus 107 ~~~~~~F~~~D~d~~G~I~~~El~~~l~~~~~~~~~~~~~-~~~~~~~~~~f~~~d~d~dg~Is~~ef~~~l~~~~ 181 (213)
.+++..|+-+|+...|.++++++..++..+ |..... ++...-+..+....|.+..|.+++.+|...|.+..
T Consensus 747 ~ElrAle~~~~~~d~~aa~~e~~~~~Lmsl----g~~~e~ee~~~~e~~~lvn~~n~l~~~qv~~~e~~ddl~R~~ 818 (890)
T KOG0035|consen 747 DELRALENEQDKIDGGAASPEELLRCLMSL----GYNTEEEEQGIAEWFRLVNKKNPLIQGQVQLLEFEDDLEREY 818 (890)
T ss_pred HHHHHHHhHHHHhhcccCCHHHHHHHHHhc----CcccchhHHHHHHHHHHHhccCcccccceeHHHHHhHhhhhh
Confidence 579999999999999999999999999988 877775 45555566677788888889999999999997643
No 124
>KOG4578 consensus Uncharacterized conserved protein, contains KAZAL and TY domains [General function prediction only]
Probab=87.78 E-value=0.43 Score=39.19 Aligned_cols=62 Identities=19% Similarity=0.142 Sum_probs=47.6
Q ss_pred HHHHHhcCCCCCcccHHHHHHHHhhhCCCCChHHHHHHHHHhcCCCCCCcccHHHHHHHHHH
Q 028131 74 RIFDLFDLKRNGVIEFGEFVRSLGVFHPHALVEDKIAFAFRLYDLRQTGFIEREELKEMVLA 135 (213)
Q Consensus 74 ~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~F~~~D~d~~G~I~~~El~~~l~~ 135 (213)
--|..+|.|.++.|+-.|+.-+-..+.+...+..=.+.+|+..|.|+|-.|+.+|++..|..
T Consensus 337 w~F~qLdkN~nn~i~rrEwKpFK~~l~k~s~~rkC~rk~~~yCDlNkDKkISl~Ew~~CL~~ 398 (421)
T KOG4578|consen 337 WYFNQLDKNSNNDIERREWKPFKRVLLKKSKPRKCSRKFFKYCDLNKDKKISLDEWRGCLGV 398 (421)
T ss_pred eeeeeecccccCccchhhcchHHHHHHhhccHHHHhhhcchhcccCCCceecHHHHhhhhcc
Confidence 34677888888888877765554444434455666889999999999999999999998853
No 125
>PF08726 EFhand_Ca_insen: Ca2+ insensitive EF hand; InterPro: IPR014837 EF hands are helix-loop-helix binding motifs involved in the regulation of many cellular processes. EF hands usually bind to Ca2+ ions, which cause a major conformational change that allows the protein to interact with its designated targets. This protein corresponds to an EF hand which has partially or entirely lost its calcium-binding properties. The calcium insensitive EF hand is still able to mediate protein-protein recognition []. ; PDB: 1H8B_A 1SJJ_B.
Probab=86.95 E-value=0.65 Score=29.26 Aligned_cols=60 Identities=15% Similarity=0.222 Sum_probs=37.5
Q ss_pred ChHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhCC---CCCCCcCHHHHHH
Q 028131 104 LVEDKIAFAFRLYDLRQTGFIEREELKEMVLALLHESDLILSDDVIETIVDKSFSDADT---NGDGKIDPEEWKE 175 (213)
Q Consensus 104 ~~~~~~~~~F~~~D~d~~G~I~~~El~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~---d~dg~Is~~ef~~ 175 (213)
...+.+..+|+.+ .++.++||.+||++.| ++++++.++..+=...+. ...|.++|..|+.
T Consensus 3 ~s~eqv~~aFr~l-A~~KpyVT~~dLr~~l-----------~pe~aey~~~~Mp~~~~~~~~~~~~~~DY~~f~~ 65 (69)
T PF08726_consen 3 DSAEQVEEAFRAL-AGGKPYVTEEDLRRSL-----------TPEQAEYCISRMPPYEGPDGDAIPGAYDYESFTN 65 (69)
T ss_dssp STCHHHHHHHHHH-CTSSSCEEHHHHHHHS------------CCCHHHHHCCSEC--SSS----TTEEECHHHHC
T ss_pred CCHHHHHHHHHHH-HcCCCcccHHHHHHHc-----------CcHHHHHHHHHCcccCCCCcCCCCCCcCHHHHHH
Confidence 3457899999999 7888999999999875 333345555211111111 1226688888865
No 126
>KOG2243 consensus Ca2+ release channel (ryanodine receptor) [Signal transduction mechanisms]
Probab=86.79 E-value=1.4 Score=43.11 Aligned_cols=59 Identities=17% Similarity=0.323 Sum_probs=47.5
Q ss_pred HHHHhcCCCCCCcccHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhCCCCCCCcCHHHHHHHHH
Q 028131 111 FAFRLYDLRQTGFIEREELKEMVLALLHESDLILSDDVIETIVDKSFSDADTNGDGKIDPEEWKEFVK 178 (213)
Q Consensus 111 ~~F~~~D~d~~G~I~~~El~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~d~dg~Is~~ef~~~l~ 178 (213)
..|+.||.||.|.|+..+|...+.. ..+.+..+++-++ .-...|....++|++|+..+.
T Consensus 4061 dtfkeydpdgkgiiskkdf~kame~-----~k~ytqse~dfll----scae~dend~~~y~dfv~rfh 4119 (5019)
T KOG2243|consen 4061 DTFKEYDPDGKGIISKKDFHKAMEG-----HKHYTQSEIDFLL----SCAEADENDMFDYEDFVDRFH 4119 (5019)
T ss_pred ccchhcCCCCCccccHHHHHHHHhc-----cccchhHHHHHHH----HhhccCccccccHHHHHHHhc
Confidence 3467789999999999999998864 4566677777666 566778888999999998774
No 127
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=85.22 E-value=4.6 Score=29.68 Aligned_cols=53 Identities=17% Similarity=0.164 Sum_probs=36.3
Q ss_pred CCCCcCHHHHHHHHhcccC----cchHHHHHHHHHhcCCCCCcccHHHHHHHHhhhC
Q 028131 48 DDGIIHKEEFQLALFRNKN----KKNLFADRIFDLFDLKRNGVIEFGEFVRSLGVFH 100 (213)
Q Consensus 48 ~~G~l~~~e~~~~l~~~~~----~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~ 100 (213)
....|+...|..++...+. .....+..+|..+-..+...|+|++|+.++..+.
T Consensus 15 ~~~~m~~~~F~Kl~kD~~i~d~k~t~tdvDiiF~Kvk~k~~~~I~f~~F~~aL~~lA 71 (154)
T PF05517_consen 15 NGTEMDSKNFAKLCKDCGIIDKKLTSTDVDIIFSKVKAKGARKITFEQFLEALAELA 71 (154)
T ss_dssp TSSEEEHHHHHHHHHHTSS--SSS-HHHHHHHHHHHT-SS-SEEEHHHHHHHHHHHH
T ss_pred ccccccHHHHHHHHHHcCCCCCCCchHHHHHHHHHhhcCCCcccCHHHHHHHHHHHH
Confidence 4567899999988866543 2344567888887666666799999988876443
No 128
>PLN02230 phosphoinositide phospholipase C 4
Probab=84.88 E-value=4.4 Score=36.53 Aligned_cols=73 Identities=12% Similarity=0.102 Sum_probs=52.1
Q ss_pred ChHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHhhhcCC-CCCHHHHHHHHHHHHHhhC---CCCCCCcCHHHHHHHHHh
Q 028131 104 LVEDKIAFAFRLYDLRQTGFIEREELKEMVLALLHESDL-ILSDDVIETIVDKSFSDAD---TNGDGKIDPEEWKEFVKK 179 (213)
Q Consensus 104 ~~~~~~~~~F~~~D~d~~G~I~~~El~~~l~~~~~~~~~-~~~~~~~~~~~~~~f~~~d---~d~dg~Is~~ef~~~l~~ 179 (213)
.+..++..+|..+..++ +.++.++|..+|...-. ++ ..+.+.+..++..+..... .-..+.++.+.|..+|..
T Consensus 26 ~p~~ei~~lf~~~s~~~-~~mt~~~l~~FL~~~Q~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~F~~yL~s 102 (598)
T PLN02230 26 GPVADVRDLFEKYADGD-AHMSPEQLQKLMAEEGG--GEGETSLEEAERIVDEVLRRKHHIAKFTRRNLTLDDFNYYLFS 102 (598)
T ss_pred CCcHHHHHHHHHHhCCC-CccCHHHHHHHHHHhCC--CcccCCHHHHHHHHHHHHhhccccccccccccCHHHHHHHHcC
Confidence 35678999999997555 89999999999987610 12 3466777777765544332 123456999999999976
No 129
>KOG4286 consensus Dystrophin-like protein [Cell motility; Signal transduction mechanisms; Cytoskeleton]
Probab=84.87 E-value=12 Score=34.58 Aligned_cols=159 Identities=12% Similarity=0.185 Sum_probs=98.4
Q ss_pred hHhhhhcCCCCHHHHHHHHHHHHHhhcCCCCCC-CcCHHHHHHHHhc--------cc--Cc----chHHHHHHHHHhcCC
Q 028131 18 PTVLAAETPFTVCEVEALYELFKKLSSSIFDDG-IIHKEEFQLALFR--------NK--NK----KNLFADRIFDLFDLK 82 (213)
Q Consensus 18 ~~~l~~~~~ls~~~i~~l~~~F~~~d~~~~~~G-~l~~~e~~~~l~~--------~~--~~----~~~~~~~~~~~~d~~ 82 (213)
+..|++...+..-...-+-.+|+.++-. ++. .++..+....|.. .+ .. ...-+.-+++.+|..
T Consensus 405 lr~LQK~l~ldlv~ltl~l~if~~h~l~--~~~e~m~~~~~i~~L~~~y~~l~e~~g~~v~v~l~vD~~lN~llNvyD~~ 482 (966)
T KOG4286|consen 405 LRRLQKALCLDLLSLSLALDALDQHNLK--QNDQPMDILQIINCLTTIYDRLEQEHGNLVNVPLCVDMCLNWLLNVYDTG 482 (966)
T ss_pred HHHHHHHHHhccccHHHHHHHHHHhccc--ccCcCCCHHHHHHHHHHHHHHHHHHcccccccchHHHHHHHHHHHhcccC
Confidence 4445554444444445556667776644 322 3344333322211 11 11 122246788999999
Q ss_pred CCCcccHHHHHHHHhhhCCCCChHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHhh---h-------cCCCCCHHHHHHH
Q 028131 83 RNGVIEFGEFVRSLGVFHPHALVEDKIAFAFRLYDLRQTGFIEREELKEMVLALLH---E-------SDLILSDDVIETI 152 (213)
Q Consensus 83 ~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~F~~~D~d~~G~I~~~El~~~l~~~~~---~-------~~~~~~~~~~~~~ 152 (213)
.+|.|..-+|...+..+| ....++++..+|......+.-.+ ...|...|..+.. . .|-++.+.
T Consensus 483 R~g~irvls~ki~~i~lc-k~~leek~~ylF~~vA~~~sq~~-q~~l~lLL~dliqipr~lGE~aAfGgsNveps----- 555 (966)
T KOG4286|consen 483 RTGRIRVLSFKIGIISLC-KAHLEDKYRYLFKQVASSTSQCD-QRRLGLLLHDLIQIPRQLGEVAAFGGSNIEPS----- 555 (966)
T ss_pred CCcceEEeeehhhHHHHh-cchhHHHHHHHHHHHcCchhhHH-HHHHHHHHHHHHHHHHHHhHHHhhcCCCCChH-----
Confidence 999999999988888888 57788999999999987776654 4444444433321 1 13334333
Q ss_pred HHHHHHhhCCCCCCCcCHHHHHHHHHhChhhHhhc
Q 028131 153 VDKSFSDADTNGDGKIDPEEWKEFVKKNPSLIKNM 187 (213)
Q Consensus 153 ~~~~f~~~d~d~dg~Is~~ef~~~l~~~~~~~~~~ 187 (213)
++++|.. .++--.|++..|..|+...|-...++
T Consensus 556 vrsCF~~--v~~~pei~~~~f~dw~~~epqsmVwL 588 (966)
T KOG4286|consen 556 VRSCFQF--VNNKPEIEAALFLDWMRLEPQSMVWL 588 (966)
T ss_pred HHHHHHh--cCCCCcchHHHHHHHhccCcchhhHH
Confidence 4666663 35556899999999999988877764
No 130
>PF09068 EF-hand_2: EF hand; InterPro: IPR015153 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=84.81 E-value=2.8 Score=29.82 Aligned_cols=72 Identities=18% Similarity=0.219 Sum_probs=48.7
Q ss_pred HHHHHHHHhcCCCC--CCcccHHHHHHHHHHHhhhcC---CCCC-------HHHHHHHHHHHHHhhCCCCCCCcCHHHHH
Q 028131 107 DKIAFAFRLYDLRQ--TGFIEREELKEMVLALLHESD---LILS-------DDVIETIVDKSFSDADTNGDGKIDPEEWK 174 (213)
Q Consensus 107 ~~~~~~F~~~D~d~--~G~I~~~El~~~l~~~~~~~~---~~~~-------~~~~~~~~~~~f~~~d~d~dg~Is~~ef~ 174 (213)
..+..+|+...-+. +..|+..++..++..+++... +... +.-++-++++++..+|+++.|.|+.-.|.
T Consensus 41 ~~v~~~f~~~~l~~~~d~~l~v~~l~~~L~~iy~~l~~~~p~~~~i~~~~v~~a~~L~ln~Ll~vyD~~rtG~I~vls~K 120 (127)
T PF09068_consen 41 SNVIEAFREHGLNQSNDSSLSVSQLETLLSSIYEFLNKRLPTLHQIPSRPVDLAVDLLLNWLLNVYDSQRTGKIRVLSFK 120 (127)
T ss_dssp HHHHHHHHHTT---T-TSEEEHHHHHHHHHHHHHHHHHHSTTS--HH-----HHHHHHHHHHHHHH-TT--SEEEHHHHH
T ss_pred HHHHHHHHHcCCCcccCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCchhHHHHHHHHHHHHHHHhCCCCCCeeehhHHH
Confidence 34566777666533 577999999999999985421 1111 25677888999999999999999998887
Q ss_pred HHHH
Q 028131 175 EFVK 178 (213)
Q Consensus 175 ~~l~ 178 (213)
..+.
T Consensus 121 vaL~ 124 (127)
T PF09068_consen 121 VALI 124 (127)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7664
No 131
>KOG3555 consensus Ca2+-binding proteoglycan Testican [General function prediction only]
Probab=84.32 E-value=2 Score=35.62 Aligned_cols=97 Identities=15% Similarity=0.039 Sum_probs=55.4
Q ss_pred HHHHHHHHHhhcCCCCCCCcCHHHHHHH---Hhc-ccCcchHHHHHHHHHhcCCCCCcccHHHHHHHHhhhCCCCChHHH
Q 028131 33 EALYELFKKLSSSIFDDGIIHKEEFQLA---LFR-NKNKKNLFADRIFDLFDLKRNGVIEFGEFVRSLGVFHPHALVEDK 108 (213)
Q Consensus 33 ~~l~~~F~~~d~~~~~~G~l~~~e~~~~---l~~-~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~ 108 (213)
.+|..=|+.+=.+ .++......+... +-. .+....-.+-=+|..+|.|.++.++..|+..+- ....+.=
T Consensus 211 ~RL~dWF~~lhe~--s~~~~~~ss~~~~~~~~d~s~~p~CKds~gWMFnklD~N~Dl~Ld~sEl~~I~-----ldknE~C 283 (434)
T KOG3555|consen 211 NRLRDWFKALHED--SSQNDKTSSLHSAASGFDTSILPICKDSLGWMFNKLDTNYDLLLDQSELRAIE-----LDKNEAC 283 (434)
T ss_pred HHHHHHHHHHHhh--hhccCcchhhcccccccccccCcchhhhhhhhhhccccccccccCHHHhhhhh-----ccCchhH
Confidence 5555555554444 4443333333322 111 112223334557777777777777777766654 2334455
Q ss_pred HHHHHHhcCCCCCCcccHHHHHHHHHHH
Q 028131 109 IAFAFRLYDLRQTGFIEREELKEMVLAL 136 (213)
Q Consensus 109 ~~~~F~~~D~d~~G~I~~~El~~~l~~~ 136 (213)
++-.|...|...||.|+-.|+...+..-
T Consensus 284 ikpFfnsCD~~kDg~iS~~EWC~CF~k~ 311 (434)
T KOG3555|consen 284 IKPFFNSCDTYKDGSISTNEWCYCFQKS 311 (434)
T ss_pred HHHHHhhhcccccCccccchhhhhhccC
Confidence 7777777777777777777777777643
No 132
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=83.89 E-value=2.5 Score=37.57 Aligned_cols=65 Identities=12% Similarity=0.240 Sum_probs=56.2
Q ss_pred HHHHHHHHhcCCCCCCcccHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhCCCCCCCcCHHHHHHHHHh
Q 028131 107 DKIAFAFRLYDLRQTGFIEREELKEMVLALLHESDLILSDDVIETIVDKSFSDADTNGDGKIDPEEWKEFVKK 179 (213)
Q Consensus 107 ~~~~~~F~~~D~d~~G~I~~~El~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~d~dg~Is~~ef~~~l~~ 179 (213)
...+.-|..+|.|+.|++..+++..++... +..++...+..++ ...|.+-.|.+...+|..++..
T Consensus 593 ~~~~~rf~~lD~~k~~~~~i~~v~~vlk~~----~~~~d~~~~~~~l----~ea~~~~~g~v~l~e~~q~~s~ 657 (680)
T KOG0042|consen 593 LRRKTRFAFLDADKKAYQAIADVLKVLKSE----NVGWDEDRLHEEL----QEADENLNGFVELREFLQLMSA 657 (680)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHHHHHHh----cCCCCHHHHHHHH----HHHHHhhcceeeHHHHHHHHHH
Confidence 356788999999999999999999999987 7789988877777 6777777899999999998865
No 133
>PF08414 NADPH_Ox: Respiratory burst NADPH oxidase; InterPro: IPR013623 This domain is found in plant proteins such as respiratory burst NADPH oxidase proteins which produce reactive oxygen species as a defence mechanism. It tends to occur to the N terminus of an EF-hand (IPR002048 from INTERPRO), which suggests a direct regulatory effect of Ca2+ on the activity of the NADPH oxidase in plants []. ; GO: 0004601 peroxidase activity, 0050664 oxidoreductase activity, acting on NADH or NADPH, oxygen as acceptor, 0055114 oxidation-reduction process; PDB: 3A8R_A.
Probab=82.51 E-value=6.7 Score=26.51 Aligned_cols=61 Identities=20% Similarity=0.334 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHhhcCCCCCCCcCHHHHHHHHhcccCcchHHHHHHHHHhcCC---CCCcccHHHHHHHHh
Q 028131 31 EVEALYELFKKLSSSIFDDGIIHKEEFQLALFRNKNKKNLFADRIFDLFDLK---RNGVIEFGEFVRSLG 97 (213)
Q Consensus 31 ~i~~l~~~F~~~d~~~~~~G~l~~~e~~~~l~~~~~~~~~~~~~~~~~~d~~---~~~~i~~~ef~~~~~ 97 (213)
.+..+..+|+.+. .+|+|+...|..++... ....++.++|..+..- ....|+.+|+..++.
T Consensus 28 ~W~~VE~RFd~La----~dG~L~rs~Fg~CIGM~--dSkeFA~eLFdALaRrr~i~~~~I~k~eL~efW~ 91 (100)
T PF08414_consen 28 GWKEVEKRFDKLA----KDGLLPRSDFGECIGMK--DSKEFAGELFDALARRRGIKGDSITKDELKEFWE 91 (100)
T ss_dssp -HHHHHHHHHHH-----BTTBEEGGGHHHHHT----S-HHHHHHHHHHHHHHTT--SSEE-HHHHHHHHH
T ss_pred CHHHHHHHHHHhC----cCCcccHHHHHHhcCCc--ccHHHHHHHHHHHHHhcCCccCCcCHHHHHHHHH
Confidence 3556666666665 46677777766655322 2344445555554221 123455555555543
No 134
>PLN02228 Phosphoinositide phospholipase C
Probab=81.71 E-value=6.1 Score=35.44 Aligned_cols=69 Identities=14% Similarity=0.186 Sum_probs=48.4
Q ss_pred ChHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhCC----CCCCCcCHHHHHHHHHh
Q 028131 104 LVEDKIAFAFRLYDLRQTGFIEREELKEMVLALLHESDLILSDDVIETIVDKSFSDADT----NGDGKIDPEEWKEFVKK 179 (213)
Q Consensus 104 ~~~~~~~~~F~~~D~d~~G~I~~~El~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~----d~dg~Is~~ef~~~l~~ 179 (213)
.+..++..+|..+..+ +.|+.++|..+|...-. ....+.+.+..++ ..+.. ...|.++.+.|..++..
T Consensus 21 ~~~~ei~~if~~~s~~--~~~t~~~~~~FL~~~Q~--~~~~~~~~~~~i~----~~~~~~~~~~~~~~~~~~gF~~yl~s 92 (567)
T PLN02228 21 EPPVSIKRLFEAYSRN--GKMSFDELLRFVSEVQG--ERHAGLDYVQDIF----HSVKHHNVFHHHGLVHLNAFYRYLFS 92 (567)
T ss_pred CCcHHHHHHHHHhcCC--CccCHHHHHHHHHHhcC--CccCCHHHHHHHH----HHhccchhhcccCccCHHHHHHHhcC
Confidence 4678899999998743 68999999999987621 1224455666666 33332 23467999999999976
Q ss_pred C
Q 028131 180 N 180 (213)
Q Consensus 180 ~ 180 (213)
.
T Consensus 93 ~ 93 (567)
T PLN02228 93 D 93 (567)
T ss_pred c
Confidence 3
No 135
>PF04876 Tenui_NCP: Tenuivirus major non-capsid protein; InterPro: IPR006960 This entry contains the tenuivirus major non-capsid protein. Proteins accumulate in large amounts in tenuivirus infected cells. They are found in the inclusion bodies that are formed after infection [].
Probab=79.92 E-value=12 Score=27.30 Aligned_cols=48 Identities=27% Similarity=0.434 Sum_probs=33.9
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCCCCCcCHHHHHHHHHhChhhHhhcCchh
Q 028131 141 DLILSDDVIETIVDKSFSDADTNGDGKIDPEEWKEFVKKNPSLIKNMTLPY 191 (213)
Q Consensus 141 ~~~~~~~~~~~~~~~~f~~~d~d~dg~Is~~ef~~~l~~~~~~~~~~~~~~ 191 (213)
..+++.+++..++..+.+.+..++ +.=++|...+.+.|.++.++-.+.
T Consensus 125 ~n~MSk~Qik~L~~~Ii~~akae~---~dtE~Ye~vwkKmPaY~~nil~~~ 172 (175)
T PF04876_consen 125 PNRMSKDQIKTLCEQIIEMAKAES---SDTEHYEKVWKKMPAYFSNILQPY 172 (175)
T ss_pred cchhhHHHHHHHHHHHHHHHhccC---CchHHHHHHHHHhhHHHHHHHHHH
Confidence 466777777777777766665443 334788888888998888775543
No 136
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=76.64 E-value=5.8 Score=35.43 Aligned_cols=93 Identities=11% Similarity=0.154 Sum_probs=60.2
Q ss_pred cCCCCHHHHHHHHHHHHHhhcCCCCCCCcCHHHHHHHHhcccCcchHHHHHHHHH-hcCCCCCcccHHHHHHHHhhhCCC
Q 028131 24 ETPFTVCEVEALYELFKKLSSSIFDDGIIHKEEFQLALFRNKNKKNLFADRIFDL-FDLKRNGVIEFGEFVRSLGVFHPH 102 (213)
Q Consensus 24 ~~~ls~~~i~~l~~~F~~~d~~~~~~G~l~~~e~~~~l~~~~~~~~~~~~~~~~~-~d~~~~~~i~~~ef~~~~~~~~~~ 102 (213)
...+++..++-+...|..+|.+ +||.++..++...+...+..+ |....+.. --.+..|.++++-|++.|+...-.
T Consensus 306 s~ELs~~~~~Fl~~~f~~~D~d--~Dg~L~p~El~~LF~~~P~~p--W~~~~~~~~t~~~~~G~ltl~g~l~~WsL~Tll 381 (625)
T KOG1707|consen 306 SVELSPKGYRFLVDVFEKFDRD--NDGALSPEELKDLFSTAPGSP--WTSSPYKDSTVKNERGWLTLNGFLSQWSLMTLL 381 (625)
T ss_pred ceeccHHHHHHHHHHHHhccCC--CCCCcCHHHHHHHhhhCCCCC--CCCCcccccceecccceeehhhHHHHHHHHhhc
Confidence 4568899999999999999999 999999999997764433211 10000000 011256889999999998765532
Q ss_pred CChHHHHHHHHHhcCCCC
Q 028131 103 ALVEDKIAFAFRLYDLRQ 120 (213)
Q Consensus 103 ~~~~~~~~~~F~~~D~d~ 120 (213)
......-..+|-.|..++
T Consensus 382 d~~~t~~~L~Ylgf~~~~ 399 (625)
T KOG1707|consen 382 DPRRTLEYLAYLGFPTDA 399 (625)
T ss_pred cHHHHHHHHHhcCCcccc
Confidence 233333445566665553
No 137
>KOG2557 consensus Uncharacterized conserved protein, contains TLDc domain [Function unknown]
Probab=75.16 E-value=23 Score=29.89 Aligned_cols=54 Identities=11% Similarity=0.346 Sum_probs=43.5
Q ss_pred CcccHHHHHHHHhhhCCCCChHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHhhh
Q 028131 85 GVIEFGEFVRSLGVFHPHALVEDKIAFAFRLYDLRQTGFIEREELKEMVLALLHE 139 (213)
Q Consensus 85 ~~i~~~ef~~~~~~~~~~~~~~~~~~~~F~~~D~d~~G~I~~~El~~~l~~~~~~ 139 (213)
..++++.+........ .+..++..+.++...|.+++|.....++.+++..++..
T Consensus 73 ~~~~l~k~~~~~~~~~-~gt~dq~a~mL~~~~~~sgn~~~~~~q~eQ~~~~vlks 126 (427)
T KOG2557|consen 73 DKMTLEKLVIAKATYE-KGTDDQIAEMLYQTLDVNGNGVLSRSQLEQFLVVVLKS 126 (427)
T ss_pred ccchHHHHhhHHhhhc-cCcccHHHHHHHHHHhhccccccchhHHHHHHHHHhhh
Confidence 3577887776665544 56778889999999999999999999999999877643
No 138
>PLN02223 phosphoinositide phospholipase C
Probab=74.49 E-value=23 Score=31.55 Aligned_cols=75 Identities=16% Similarity=-0.066 Sum_probs=55.9
Q ss_pred ChHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHhhhcC-CCCCHHHHHHHHHHHHHhhC----CCCCCCcCHHHHHHHHH
Q 028131 104 LVEDKIAFAFRLYDLRQTGFIEREELKEMVLALLHESD-LILSDDVIETIVDKSFSDAD----TNGDGKIDPEEWKEFVK 178 (213)
Q Consensus 104 ~~~~~~~~~F~~~D~d~~G~I~~~El~~~l~~~~~~~~-~~~~~~~~~~~~~~~f~~~d----~d~dg~Is~~ef~~~l~ 178 (213)
.+.+.++.+|..+. ++.|.++.+.|..++.-+.+.-| ...+.++++.++++++.... ....+.++.+.|.++|.
T Consensus 13 ~~p~~v~~~f~~~~-~~~~~m~~~~l~~fl~~l~~~q~e~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~l~~~~f~~~L~ 91 (537)
T PLN02223 13 NQPDLILNFFGNEF-HGYDDDMPELLPRFIELLDTEKDEDGAGLNAAEKIAAELKRRKCDILAFRNLRCLELDHLNEFLF 91 (537)
T ss_pred CCcHHHHHHHHHhh-cCCCCCCHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHhhcccchhhhhccccCHHHHHHHhc
Confidence 45678999999995 67799999999999954433323 46678888888887775442 12235699999999997
Q ss_pred h
Q 028131 179 K 179 (213)
Q Consensus 179 ~ 179 (213)
.
T Consensus 92 s 92 (537)
T PLN02223 92 S 92 (537)
T ss_pred C
Confidence 6
No 139
>KOG4301 consensus Beta-dystrobrevin [Cytoskeleton]
Probab=74.16 E-value=45 Score=27.94 Aligned_cols=103 Identities=14% Similarity=0.162 Sum_probs=71.0
Q ss_pred HHHHHHHhcCCCCCcccHHHHHHHHhhhCCCCChHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHhhhc---CCCCCHHH
Q 028131 72 ADRIFDLFDLKRNGVIEFGEFVRSLGVFHPHALVEDKIAFAFRLYDLRQTGFIEREELKEMVLALLHES---DLILSDDV 148 (213)
Q Consensus 72 ~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~F~~~D~d~~G~I~~~El~~~l~~~~~~~---~~~~~~~~ 148 (213)
...++..+|..+.|.++--.....++.+| .+...++++.+|..+. |..|.+..-.+-+++..++... -...+..-
T Consensus 112 laflLaA~ds~~~g~~~vfavkialatlc-~gk~~dklryIfs~is-ds~gim~~i~~~~fl~evlslpT~v~e~psfg~ 189 (434)
T KOG4301|consen 112 LAFLLAAEDSEGQGKQQVFAVKIALATLC-GGKIKDKLRYIFSLIS-DSRGIMQEIQRDQFLHEVLSLPTAVFEGPSFGY 189 (434)
T ss_pred HHHHHhhcCccCCCCceeecchhhhhhhc-cchHHHHHHHHHHHHc-cchHHHHHHHHHHHHHHHHcCCchhhcCCCcch
Confidence 35667778999999888777777788888 6888899999999998 5569888888888888765421 11111111
Q ss_pred HHHHHHHHHHhhCCCCCCCcCHHHHHHHHHhCh
Q 028131 149 IETIVDKSFSDADTNGDGKIDPEEWKEFVKKNP 181 (213)
Q Consensus 149 ~~~~~~~~f~~~d~d~dg~Is~~ef~~~l~~~~ 181 (213)
.+..++..|.. +.+++.+.|+..+...|
T Consensus 190 te~~a~~cf~q-----qrKv~Ln~fldtl~sdp 217 (434)
T KOG4301|consen 190 TELSARLCFLQ-----QRKVELNQFLDTLMSDP 217 (434)
T ss_pred HHHHHHHHHHH-----HHHHHHHHHHHHHhcCC
Confidence 12334444432 45788888888887654
No 140
>PLN02952 phosphoinositide phospholipase C
Probab=72.13 E-value=43 Score=30.43 Aligned_cols=86 Identities=13% Similarity=0.075 Sum_probs=55.7
Q ss_pred CCCCcCHHHHHHHHhccc---CcchHHHHHHHHHhcCCCCCcccHHHHHHHHhhhCCCC-ChHHHHHHHHHhc-------
Q 028131 48 DDGIIHKEEFQLALFRNK---NKKNLFADRIFDLFDLKRNGVIEFGEFVRSLGVFHPHA-LVEDKIAFAFRLY------- 116 (213)
Q Consensus 48 ~~G~l~~~e~~~~l~~~~---~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~-~~~~~~~~~F~~~------- 116 (213)
+.|.+++.+|..+..... ......+..+|..+..+ .+.++.++|..++...+... ...+.+..++..+
T Consensus 13 ~~g~l~f~~f~~f~~~~k~~~~~~r~ei~~lf~~~~~~-~~~mt~~~l~~FL~~~Q~e~~~~~~~~~~i~~~~~~~~~~~ 91 (599)
T PLN02952 13 DSGSYNYKMFNLFNRKFKITEAEPPDDVKDVFCKFSVG-GGHMGADQLRRFLVLHQDELDCTLAEAQRIVEEVINRRHHV 91 (599)
T ss_pred cCCCcCHHHHHHHHHHhccccCCChHHHHHHHHHHhCC-CCccCHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHhhcccc
Confidence 468999999874433332 22456778899988644 36799999999998766432 2334444444332
Q ss_pred CCCCCCcccHHHHHHHHH
Q 028131 117 DLRQTGFIEREELKEMVL 134 (213)
Q Consensus 117 D~d~~G~I~~~El~~~l~ 134 (213)
...+.+.++.+.|..+|.
T Consensus 92 ~~~~~~~l~~~~F~~~l~ 109 (599)
T PLN02952 92 TRYTRHGLNLDDFFHFLL 109 (599)
T ss_pred ccccccCcCHHHHHHHHc
Confidence 122345689999998885
No 141
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=72.12 E-value=6.1 Score=33.88 Aligned_cols=58 Identities=17% Similarity=0.046 Sum_probs=44.0
Q ss_pred CCCCcccHHHHHHHHhhhCCCCC---hHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHhhh
Q 028131 82 KRNGVIEFGEFVRSLGVFHPHAL---VEDKIAFAFRLYDLRQTGFIEREELKEMVLALLHE 139 (213)
Q Consensus 82 ~~~~~i~~~ef~~~~~~~~~~~~---~~~~~~~~F~~~D~d~~G~I~~~El~~~l~~~~~~ 139 (213)
.++...+-.||+.+....|..+. .-+.++.+-+.+|.|.+|.|+.+|=-.|++.-|.+
T Consensus 40 agds~at~nefc~~~~~~c~s~~dklg~EAir~iHrqmDDD~nG~Id~~ESdeFlrEdmky 100 (575)
T KOG4403|consen 40 AGDSRATRNEFCEVDAPECKSEQDKLGYEAIRDIHRQMDDDHNGSIDVEESDEFLREDMKY 100 (575)
T ss_pred cCCchhhhccchhcCCchhhcccchhhHHHHHHHHHhcccccCCCcccccchHHHHHHhhc
Confidence 45567888888877665554332 22678899999999999999999999999876644
No 142
>PF08414 NADPH_Ox: Respiratory burst NADPH oxidase; InterPro: IPR013623 This domain is found in plant proteins such as respiratory burst NADPH oxidase proteins which produce reactive oxygen species as a defence mechanism. It tends to occur to the N terminus of an EF-hand (IPR002048 from INTERPRO), which suggests a direct regulatory effect of Ca2+ on the activity of the NADPH oxidase in plants []. ; GO: 0004601 peroxidase activity, 0050664 oxidoreductase activity, acting on NADH or NADPH, oxygen as acceptor, 0055114 oxidation-reduction process; PDB: 3A8R_A.
Probab=71.47 E-value=24 Score=23.90 Aligned_cols=50 Identities=20% Similarity=0.331 Sum_probs=20.0
Q ss_pred CCcccHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhCCCCCCCcCHHHHHHHHH
Q 028131 121 TGFIEREELKEMVLALLHESDLILSDDVIETIVDKSFSDADTNGDGKIDPEEWKEFVK 178 (213)
Q Consensus 121 ~G~I~~~El~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~d~dg~Is~~ef~~~l~ 178 (213)
+|+|+.+.|-+++ |-.-+.+-+.++++.+=...... ...|+.+|+..+..
T Consensus 42 dG~L~rs~Fg~CI-------GM~dSkeFA~eLFdALaRrr~i~-~~~I~k~eL~efW~ 91 (100)
T PF08414_consen 42 DGLLPRSDFGECI-------GMKDSKEFAGELFDALARRRGIK-GDSITKDELKEFWE 91 (100)
T ss_dssp TTBEEGGGHHHHH-------T--S-HHHHHHHHHHHHHHTT---SSEE-HHHHHHHHH
T ss_pred CCcccHHHHHHhc-------CCcccHHHHHHHHHHHHHhcCCc-cCCcCHHHHHHHHH
Confidence 4555555555555 33333443333333333332222 34455555554443
No 143
>PLN02508 magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase
Probab=70.74 E-value=16 Score=30.38 Aligned_cols=85 Identities=18% Similarity=0.183 Sum_probs=53.2
Q ss_pred ChHHHHHHHHHhc--CCCCCCcccHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhCCCCCCCcCHHHHHHHHH-hC
Q 028131 104 LVEDKIAFAFRLY--DLRQTGFIEREELKEMVLALLHESDLILSDDVIETIVDKSFSDADTNGDGKIDPEEWKEFVK-KN 180 (213)
Q Consensus 104 ~~~~~~~~~F~~~--D~d~~G~I~~~El~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~d~dg~Is~~ef~~~l~-~~ 180 (213)
..+++++.+...+ |.|....+--+||.+.+.. ++++.-...++-+-+.+-.--+|.+=|.|..+-+. .+
T Consensus 38 ~~~~e~~A~l~Efr~DyNr~HF~R~~eF~~~~~~--------l~~~~r~~FidFLerSctaEFSGflLYKEl~rrlk~~n 109 (357)
T PLN02508 38 LDMAEFEALLQEFKTDYNQTHFVRNEEFKAAADK--------IQGPLRQIFIEFLERSCTAEFSGFLLYKELGRRLKKTN 109 (357)
T ss_pred hhHHHHHHHHHHHHhCccccccccChhhccchhh--------CCHHHHHHHHHHHHhhhhhhcccchHHHHHHHhcccCC
Confidence 3445556555555 5566667777777665432 44554444454445566566678999999888886 47
Q ss_pred hhhHhhcCchhhhhhh
Q 028131 181 PSLIKNMTLPYLKDIT 196 (213)
Q Consensus 181 ~~~~~~~~~~~~~~~~ 196 (213)
|.+.+.+.+...++.|
T Consensus 110 P~lae~F~lMaRDEAR 125 (357)
T PLN02508 110 PVVAEIFTLMSRDEAR 125 (357)
T ss_pred hHHHHHHHHhCchhHH
Confidence 8888777665544433
No 144
>PF14513 DAG_kinase_N: Diacylglycerol kinase N-terminus; PDB: 1TUZ_A.
Probab=70.26 E-value=3.6 Score=29.72 Aligned_cols=25 Identities=16% Similarity=0.264 Sum_probs=14.0
Q ss_pred CchHhhhhcCCCCHHHHHHHHHHHH
Q 028131 16 EEPTVLAAETPFTVCEVEALYELFK 40 (213)
Q Consensus 16 ~~~~~l~~~~~ls~~~i~~l~~~F~ 40 (213)
++..+|++....|...++++...|.
T Consensus 11 ~eF~qLq~y~eys~kklkdvl~eF~ 35 (138)
T PF14513_consen 11 EEFAQLQKYSEYSTKKLKDVLKEFH 35 (138)
T ss_dssp HHHHHHHHHHHH----HHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6777777777677776666666664
No 145
>TIGR01848 PHA_reg_PhaR polyhydroxyalkanoate synthesis repressor PhaR. Poly-B-hydroxyalkanoates are lipidlike carbon/energy storage polymers found in granular inclusions. PhaR is a regulatory protein found in general near other proteins associated with polyhydroxyalkanoate (PHA) granule biosynthesis and utilization. It is found to be a DNA-binding homotetramer that is also capable of binding short chain hydroxyalkanoic acids and PHA granules. PhaR may regulate the expression of itself, of the phasins that coat granules, and of enzymes that direct carbon flux into polymers stored in granules.
Probab=69.64 E-value=13 Score=25.41 Aligned_cols=65 Identities=15% Similarity=0.337 Sum_probs=39.0
Q ss_pred HhcCCCCCCcccHHHHHHHHHHHhhh------cCCCCCHHHHHHHHHHHHHhhCCCCCCCcCHHHHHHHHHhChh
Q 028131 114 RLYDLRQTGFIEREELKEMVLALLHE------SDLILSDDVIETIVDKSFSDADTNGDGKIDPEEWKEFVKKNPS 182 (213)
Q Consensus 114 ~~~D~d~~G~I~~~El~~~l~~~~~~------~~~~~~~~~~~~~~~~~f~~~d~d~dg~Is~~ef~~~l~~~~~ 182 (213)
++||...+.+|+.+++.+++..--+- .|..++...+..+| -+....+...++..=+..+++..-+
T Consensus 10 RLYDT~tS~YITLedi~~lV~~g~~f~V~DakTgeDiT~~iL~QII----~E~E~~g~~~lp~~~L~qlIr~yg~ 80 (107)
T TIGR01848 10 RLYDTETSSYVTLEDIRDLVREGREFQVVDSKSGDDLTRSILLQII----AEEESGGEPVLSTDFLTQIIRFYGG 80 (107)
T ss_pred cccCCCccceeeHHHHHHHHHCCCeEEEEECCCCchhHHHHHHHHH----HHHHhCCCCCCCHHHHHHHHHHhCh
Confidence 46788888888888888877542111 24555555444444 4444556666777666666665433
No 146
>cd07313 terB_like_2 tellurium resistance terB-like protein, subgroup 2. This family includes several uncharacterized bacterial proteins. Protein sequence homology analysis shows they are similar to tellurium resistance protein terB, but the function of this family is unknown.
Probab=69.27 E-value=16 Score=24.48 Aligned_cols=10 Identities=40% Similarity=0.444 Sum_probs=5.2
Q ss_pred CCCcCHHHHH
Q 028131 49 DGIIHKEEFQ 58 (213)
Q Consensus 49 ~G~l~~~e~~ 58 (213)
||.++..|..
T Consensus 13 DG~v~~~E~~ 22 (104)
T cd07313 13 DGEYDEEERA 22 (104)
T ss_pred cCCCCHHHHH
Confidence 5555555543
No 147
>PF14513 DAG_kinase_N: Diacylglycerol kinase N-terminus; PDB: 1TUZ_A.
Probab=68.88 E-value=13 Score=26.82 Aligned_cols=71 Identities=14% Similarity=0.104 Sum_probs=36.7
Q ss_pred CCCcCHHHHHHHHhcccCcchHHHHHHHHHhcC-------CCCCcccHHHHHHHHhhhCCCCChHHHHHHHHHhcCCCC
Q 028131 49 DGIIHKEEFQLALFRNKNKKNLFADRIFDLFDL-------KRNGVIEFGEFVRSLGVFHPHALVEDKIAFAFRLYDLRQ 120 (213)
Q Consensus 49 ~G~l~~~e~~~~l~~~~~~~~~~~~~~~~~~d~-------~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~F~~~D~d~ 120 (213)
=+.|++.+|.+.=.-. --....++.++..|.. +..+.|+|+.|..++........+++..+.+|..|-...
T Consensus 5 ~~~lsp~eF~qLq~y~-eys~kklkdvl~eF~~~g~~~~~~~~~~Id~egF~~Fm~~yLe~d~P~~lc~hLF~sF~~~~ 82 (138)
T PF14513_consen 5 WVSLSPEEFAQLQKYS-EYSTKKLKDVLKEFHGDGSLAKYNPEEPIDYEGFKLFMKTYLEVDLPEDLCQHLFLSFQKKP 82 (138)
T ss_dssp -S-S-HHHHHHHHHHH-HH----HHHHHHHH-HTSGGGGGEETTEE-HHHHHHHHHHHTT-S--HHHHHHHHHHS----
T ss_pred eeccCHHHHHHHHHHH-HHHHHHHHHHHHHHhcCCcccccCCCCCcCHHHHHHHHHHHHcCCCCHHHHHHHHHHHhCcc
Confidence 3556677766431110 0111223445555522 234689999999999888877788889999999997644
No 148
>PLN02222 phosphoinositide phospholipase C 2
Probab=68.40 E-value=27 Score=31.62 Aligned_cols=68 Identities=10% Similarity=0.222 Sum_probs=49.5
Q ss_pred hHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhCCCCCCCcCHHHHHHHHHh
Q 028131 105 VEDKIAFAFRLYDLRQTGFIEREELKEMVLALLHESDLILSDDVIETIVDKSFSDADTNGDGKIDPEEWKEFVKK 179 (213)
Q Consensus 105 ~~~~~~~~F~~~D~d~~G~I~~~El~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~d~dg~Is~~ef~~~l~~ 179 (213)
+..++..+|..+.. ++.++.++|..+|...- .....+.+.+..+++.. .. ....+.++.+.|..+|..
T Consensus 23 ~~~ei~~if~~~~~--~~~mt~~~l~~FL~~~Q--~~~~~~~~~~~~ii~~~-~~--~~~~~~~~~~gF~~yL~s 90 (581)
T PLN02222 23 APREIKTIFEKYSE--NGVMTVDHLHRFLIDVQ--KQDKATREDAQSIINSA-SS--LLHRNGLHLDAFFKYLFG 90 (581)
T ss_pred CcHHHHHHHHHhcC--CCCcCHHHHHHHHHHhc--CCccCCHHHHHHHHHhh-hh--hhhccCcCHHHHHHHhcC
Confidence 45689999999974 47999999999998762 11235677777777542 11 123567999999999976
No 149
>KOG2243 consensus Ca2+ release channel (ryanodine receptor) [Signal transduction mechanisms]
Probab=64.82 E-value=14 Score=36.80 Aligned_cols=57 Identities=23% Similarity=0.416 Sum_probs=47.2
Q ss_pred HHHhhcCCCCCCCcCHHHHHHHHhcccCcchHHHHHHHHHhcCCCCCcccHHHHHHHHh
Q 028131 39 FKKLSSSIFDDGIIHKEEFQLALFRNKNKKNLFADRIFDLFDLKRNGVIEFGEFVRSLG 97 (213)
Q Consensus 39 F~~~d~~~~~~G~l~~~e~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~ 97 (213)
|+.+|++ +.|.|+..+|..++-.-..-+...+.-++.....+.+...+|.+|+..+.
T Consensus 4063 fkeydpd--gkgiiskkdf~kame~~k~ytqse~dfllscae~dend~~~y~dfv~rfh 4119 (5019)
T KOG2243|consen 4063 FKEYDPD--GKGIISKKDFHKAMEGHKHYTQSEIDFLLSCAEADENDMFDYEDFVDRFH 4119 (5019)
T ss_pred chhcCCC--CCccccHHHHHHHHhccccchhHHHHHHHHhhccCccccccHHHHHHHhc
Confidence 5568888 99999999999998666556677778888888888888999999987654
No 150
>KOG4004 consensus Matricellular protein Osteonectin/SPARC/BM-40 [Extracellular structures]
Probab=64.13 E-value=4.2 Score=31.18 Aligned_cols=56 Identities=20% Similarity=0.377 Sum_probs=40.3
Q ss_pred HHhcCC-CCCCcccHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhCCCCCCCcCHHHHHHHHH
Q 028131 113 FRLYDL-RQTGFIEREELKEMVLALLHESDLILSDDVIETIVDKSFSDADTNGDGKIDPEEWKEFVK 178 (213)
Q Consensus 113 F~~~D~-d~~G~I~~~El~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~d~dg~Is~~ef~~~l~ 178 (213)
|-.+|. -.||+++--||.-+- .+-++-+ ..+..+|..+|.|+||.|+.+||..++-
T Consensus 193 f~qld~~p~d~~~sh~el~pl~-------ap~ipme---~c~~~f~e~cd~~nd~~ial~ew~~c~g 249 (259)
T KOG4004|consen 193 FGQLDQHPIDGYLSHTELAPLR-------APLIPME---HCTTRFFETCDLDNDKYIALDEWAGCFG 249 (259)
T ss_pred eccccCCCcccccccccccccc-------CCcccHH---hhchhhhhcccCCCCCceeHHHhhcccC
Confidence 334565 578999988887543 2334433 3467778999999999999999988764
No 151
>cd07313 terB_like_2 tellurium resistance terB-like protein, subgroup 2. This family includes several uncharacterized bacterial proteins. Protein sequence homology analysis shows they are similar to tellurium resistance protein terB, but the function of this family is unknown.
Probab=64.08 E-value=39 Score=22.50 Aligned_cols=83 Identities=11% Similarity=0.054 Sum_probs=39.6
Q ss_pred cCCCCHHHHHHHHHHHHHhhcCCCCCCCcCHHHHHHHHhcccCcchHHHHHHHHHhcCCCCCcccHHHHHHHHhhhCCCC
Q 028131 24 ETPFTVCEVEALYELFKKLSSSIFDDGIIHKEEFQLALFRNKNKKNLFADRIFDLFDLKRNGVIEFGEFVRSLGVFHPHA 103 (213)
Q Consensus 24 ~~~ls~~~i~~l~~~F~~~d~~~~~~G~l~~~e~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~ 103 (213)
.-.+++.|+..+...+...- .++..+.. .+...+........++.+|...+...++..
T Consensus 13 DG~v~~~E~~~i~~~l~~~~-------~l~~~~~~---------------~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (104)
T cd07313 13 DGEYDEEERAAIDRLLAERF-------GLDAEEAA---------------ELLAEAEALEEEAPDLYEFTSLIKEHFDYE 70 (104)
T ss_pred cCCCCHHHHHHHHHHHHHHh-------CcCHHHHH---------------HHHHHHHHHHHhCCCHHHHHHHHHHhCCHH
Confidence 44577777777777666531 13333332 222222222223456666766665443222
Q ss_pred ChHHHHHHHHHhcCCCCCCcccHHHHH
Q 028131 104 LVEDKIAFAFRLYDLRQTGFIEREELK 130 (213)
Q Consensus 104 ~~~~~~~~~F~~~D~d~~G~I~~~El~ 130 (213)
.....+..++++--. ||.++..|-.
T Consensus 71 ~r~~~l~~L~~vA~A--DG~~~~~E~~ 95 (104)
T cd07313 71 ERLELVEALWEVAYA--DGELDEYEEH 95 (104)
T ss_pred HHHHHHHHHHHHHHh--cCCCCHHHHH
Confidence 222344455554443 3566666644
No 152
>PF05920 Homeobox_KN: Homeobox KN domain; InterPro: IPR008422 This entry represents a homeobox transcription factor KN domain conserved from fungi to human and plants [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3K2A_B 2LK2_A 1X2N_A 2DMN_A.
Probab=63.17 E-value=3.1 Score=23.08 Aligned_cols=30 Identities=20% Similarity=0.230 Sum_probs=22.4
Q ss_pred cccCCCCCCchHhhhhcCCCCHHHHHHHHH
Q 028131 8 KTKQTPGYEEPTVLAAETPFTVCEVEALYE 37 (213)
Q Consensus 8 ~~~~~~~~~~~~~l~~~~~ls~~~i~~l~~ 37 (213)
+..++|+.++...|++.+++|..+|..++.
T Consensus 6 ~~nPYPs~~ek~~L~~~tgls~~Qi~~WF~ 35 (40)
T PF05920_consen 6 LHNPYPSKEEKEELAKQTGLSRKQISNWFI 35 (40)
T ss_dssp TTSGS--HHHHHHHHHHHTS-HHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 345678889999999999999999987764
No 153
>PF08976 DUF1880: Domain of unknown function (DUF1880); InterPro: IPR015070 This entry represents EF-hand calcium-binding domain-containing protein 6 that negatively regulates the androgen receptor by recruiting histone deacetylase complex, and protein DJ-1 antagonises this inhibition by abrogation of this complex [].; PDB: 1WLZ_C.
Probab=62.32 E-value=7.6 Score=27.05 Aligned_cols=33 Identities=18% Similarity=0.401 Sum_probs=22.7
Q ss_pred CCCHHHHHHHHHHHHHhhCCCCCCCcCHHHHHHHHHh
Q 028131 143 ILSDDVIETIVDKSFSDADTNGDGKIDPEEWKEFVKK 179 (213)
Q Consensus 143 ~~~~~~~~~~~~~~f~~~d~d~dg~Is~~ef~~~l~~ 179 (213)
.+++++++.++ ..+-.|..|.|.|.||+.-+..
T Consensus 3 iLtDeQFdrLW----~e~Pvn~~GrLkY~eFL~kfs~ 35 (118)
T PF08976_consen 3 ILTDEQFDRLW----NEMPVNAKGRLKYQEFLSKFSS 35 (118)
T ss_dssp ---HHHHHHHH----TTS-B-TTS-EEHHHHHHHT--
T ss_pred cccHHHhhhhh----hhCcCCccCCEeHHHHHHHccc
Confidence 36788888888 7888999999999999998864
No 154
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=61.64 E-value=15 Score=24.99 Aligned_cols=56 Identities=14% Similarity=0.275 Sum_probs=32.4
Q ss_pred CcccHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhCCCCCCCcCHHHHHHHHHhChhhHh
Q 028131 122 GFIEREELKEMVLALLHESDLILSDDVIETIVDKSFSDADTNGDGKIDPEEWKEFVKKNPSLIK 185 (213)
Q Consensus 122 G~I~~~El~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~d~dg~Is~~ef~~~l~~~~~~~~ 185 (213)
--++.+||..++..+ | + ...+ .--...|.....+....++-++++.+|..+|.+++
T Consensus 34 ~p~s~~eL~~~l~~~----g--~-~~li-~~~~~~yk~l~l~~~~~~s~~e~~~~l~~~p~Lik 89 (105)
T cd03035 34 DGLDAATLERWLAKV----G--W-ETLL-NKRGTTWRKLDDAQKAALDAAKAIALMLEHPSLIK 89 (105)
T ss_pred CCCCHHHHHHHHHHh----C--h-HHHH-ccCchHHHhCChhhhccCCHHHHHHHHHhCcCeee
Confidence 345666666666654 3 1 1111 11123344444332245788999999999998876
No 155
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=61.04 E-value=22 Score=23.91 Aligned_cols=55 Identities=27% Similarity=0.450 Sum_probs=35.4
Q ss_pred CcccHHHHHHHHHHHhhhcCCCCCHHHHHHHHH---HHHHhhCCCCCCCcCHHHHHHHHHhChhhHh
Q 028131 122 GFIEREELKEMVLALLHESDLILSDDVIETIVD---KSFSDADTNGDGKIDPEEWKEFVKKNPSLIK 185 (213)
Q Consensus 122 G~I~~~El~~~l~~~~~~~~~~~~~~~~~~~~~---~~f~~~d~d~dg~Is~~ef~~~l~~~~~~~~ 185 (213)
..++.+++.+++... +. . ++.+++ ..|...+.+....++-+++++++..+|.+++
T Consensus 34 ~~~~~~~l~~~~~~~----~~--~---~~~li~~~~~~~~~l~~~~~~~ls~~e~~~~l~~~p~Lik 91 (105)
T cd02977 34 EPPTKEELKELLAKL----GL--G---VEDLFNTRGTPYRKLGLADKDELSDEEALELMAEHPKLIK 91 (105)
T ss_pred CCCCHHHHHHHHHhc----CC--C---HHHHHhcCCchHHHcCCccccCCCHHHHHHHHHhCcCeee
Confidence 456677787777655 31 1 222232 3344554443467899999999999998865
No 156
>PF11829 DUF3349: Protein of unknown function (DUF3349); InterPro: IPR021784 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 99 to 124 amino acids in length. ; PDB: 2KVC_A 3OL3_B 3OL4_A 2LKY_A.
Probab=60.78 E-value=33 Score=23.10 Aligned_cols=65 Identities=15% Similarity=0.204 Sum_probs=47.6
Q ss_pred cccHHHHHHHHhhhCCCCChHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHhhhcCCCCCHHHHHHHHH
Q 028131 86 VIEFGEFVRSLGVFHPHALVEDKIAFAFRLYDLRQTGFIEREELKEMVLALLHESDLILSDDVIETIVD 154 (213)
Q Consensus 86 ~i~~~ef~~~~~~~~~~~~~~~~~~~~F~~~D~d~~G~I~~~El~~~l~~~~~~~~~~~~~~~~~~~~~ 154 (213)
.+.-.+|.-+++.+. ....++++..+-..+-.++...++..++..++..+. +...++++++....
T Consensus 19 GvP~~Dy~PLlALL~-r~Ltd~ev~~Va~~L~~~~~~~~~~~dI~~~I~~vt---~~~P~~~di~RV~~ 83 (96)
T PF11829_consen 19 GVPPTDYVPLLALLR-RRLTDDEVAEVAAELAARGDPPVDRIDIGVAITRVT---DELPTPEDIERVRA 83 (96)
T ss_dssp -B-HHHHHHHHHHHT-TTS-HHHHHHHHHHHHHHTSS-BSCCHHHHHHHHHC---SS-S-HHHHHHHHH
T ss_pred CCCCCccHHHHHHhc-ccCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH---cCCcCHHHHHHHHH
Confidence 377788888888777 568888888888888777777779999999998774 77888888887764
No 157
>PF00404 Dockerin_1: Dockerin type I repeat; InterPro: IPR018242 Gram-positive, thermophilic anaerobes such as Clostridium thermocellum or Clostridium cellulolyticum secretes a highly active and thermostable cellulase complex (cellulosome) responsible for the degradation of crystalline cellulose [, ]. The cellulosome contains at least 30 polypeptides, the majority of the enzymes are endoglucanases (3.2.1.4 from EC), but there are also some xylanases (3.2.1.8 from EC), beta-glucosidases (3.2.1.21 from EC) and endo-beta-1,3-1,4-glucanases (3.2.1.73 from EC). Complete sequence data for many of these enzymes has been obtained. A majority of these proteins contain a highly conserved type I dockerin domain of about 65 to 70 residues, which is generally (but not always) located in the C terminus. The dockerin domain is the binding partner of the cohesin domain (see IPR002102 from INTERPRO). The cohesin-dockerin interaction is the crucial interaction for complex formation in the cellulosome []. The dockerin domain contains a tandem repeat of two calcium-binding loop-helix motifs (distinct from EF-hand Ca-binding motifs). These motifs are about 24 amino acids in length. This entry represents these repeated Ca-binding motifs.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3P0D_J 1OHZ_B 2CCL_B 1DAV_A 1DAQ_A 2VN5_B 2VN6_B.
Probab=57.59 E-value=20 Score=16.87 Aligned_cols=16 Identities=19% Similarity=0.337 Sum_probs=10.4
Q ss_pred CCCCCCcccHHHHHHH
Q 028131 117 DLRQTGFIEREELKEM 132 (213)
Q Consensus 117 D~d~~G~I~~~El~~~ 132 (213)
|.|++|.|+.-++.-+
T Consensus 1 DvN~DG~vna~D~~~l 16 (21)
T PF00404_consen 1 DVNGDGKVNAIDLALL 16 (21)
T ss_dssp -TTSSSSSSHHHHHHH
T ss_pred CCCCCCcCCHHHHHHH
Confidence 5677787777776543
No 158
>PRK13654 magnesium-protoporphyrin IX monomethyl ester cyclase; Provisional
Probab=57.04 E-value=24 Score=29.36 Aligned_cols=85 Identities=15% Similarity=0.140 Sum_probs=58.1
Q ss_pred ChHHHHHHHHHhc--CCCCCCcccHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhCCCCCCCcCHHHHHHHHH-hC
Q 028131 104 LVEDKIAFAFRLY--DLRQTGFIEREELKEMVLALLHESDLILSDDVIETIVDKSFSDADTNGDGKIDPEEWKEFVK-KN 180 (213)
Q Consensus 104 ~~~~~~~~~F~~~--D~d~~G~I~~~El~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~d~dg~Is~~ef~~~l~-~~ 180 (213)
..+++++.+...| |.|....+--+||.+.+. +++++.-...++-+-+.+-.--+|.+=|.|..+-+. .+
T Consensus 42 ~~~~e~~A~l~E~r~DyNr~HF~R~~ef~~~~d--------~l~~e~r~~FidFLerSctaEFSGflLYKEl~rrlk~~n 113 (355)
T PRK13654 42 PNREELDAILEEMRADYNRHHFVRDEEFDQDWD--------HLDPETRKEFIDFLERSCTAEFSGFLLYKELSRRLKDRN 113 (355)
T ss_pred hhHHHHHHHHHHHHhCcccccccCChhhhhchh--------hCCHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHhccccC
Confidence 3455666666665 667777777788777443 345555555555555666666679999999999997 68
Q ss_pred hhhHhhcCchhhhhhh
Q 028131 181 PSLIKNMTLPYLKDIT 196 (213)
Q Consensus 181 ~~~~~~~~~~~~~~~~ 196 (213)
|.+.+.+.+...++.|
T Consensus 114 P~lae~F~lMaRDEAR 129 (355)
T PRK13654 114 PLLAELFQLMARDEAR 129 (355)
T ss_pred cHHHHHHHHHhhhHHH
Confidence 8888888776655544
No 159
>cd08327 CARD_RAIDD Caspase activation and recruitment domain of RIP-associated ICH-1 homologous protein with a death domain. Caspase activation and recruitment domain (CARD) of RAIDD (RIP-associated ICH-1 homologous protein with a death domain), also known as CRADD (Caspase and RIP adaptor). RAIDD is an adaptor protein that together with the p53-inducible protein PIDD and caspase-2, forms the PIDDosome complex, which is required for caspase-2 activation and plays a role in mediating stress-induced apoptosis. RAIDD contains an N-terminal CARD, which interacts with the caspase-2 CARD, and a C-terminal Death domain (DD), which interacts with the DD of PIDD. In general, CARDs are DDs associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodime
Probab=55.50 E-value=37 Score=22.72 Aligned_cols=55 Identities=11% Similarity=0.155 Sum_probs=40.2
Q ss_pred CCCcccHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhCCCCCCCcCHHHHHHHHHhChhhHhhc
Q 028131 120 QTGFIEREELKEMVLALLHESDLILSDDVIETIVDKSFSDADTNGDGKIDPEEWKEFVKKNPSLIKNM 187 (213)
Q Consensus 120 ~~G~I~~~El~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~d~dg~Is~~ef~~~l~~~~~~~~~~ 187 (213)
+.|.+|.++...+- ....+.+.+..++ ... ...|.-.|..|+.++...|.+...+
T Consensus 32 ~~gIlT~~~~e~I~-------a~~T~~~k~~~LL----diL--p~RG~~AF~~F~~aL~e~~~l~~~l 86 (94)
T cd08327 32 QEGILTESHVEEIE-------SQTTSRRKTMKLL----DIL--PSRGPKAFHAFLDSLEEFPWVRDKL 86 (94)
T ss_pred hCCCCCHHHHHHHH-------ccCChHHHHHHHH----HHH--HhhChhHHHHHHHHHHHHHHHHHHH
Confidence 46899999888876 4456666666666 343 4457888999999998888777654
No 160
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=55.40 E-value=34 Score=23.47 Aligned_cols=54 Identities=17% Similarity=0.281 Sum_probs=34.4
Q ss_pred CcccHHHHHHHHHHHhhhcCCCCCHHHHHHHHH---HHHHhhCCCCCCCcCHHHHHHHHHhChhhHh
Q 028131 122 GFIEREELKEMVLALLHESDLILSDDVIETIVD---KSFSDADTNGDGKIDPEEWKEFVKKNPSLIK 185 (213)
Q Consensus 122 G~I~~~El~~~l~~~~~~~~~~~~~~~~~~~~~---~~f~~~d~d~dg~Is~~ef~~~l~~~~~~~~ 185 (213)
-.++.+||..++..+ |.. ++.+++ ..+.....+. ..++-+++++++..+|.+++
T Consensus 34 ~~~t~~el~~~l~~~----~~~-----~~~lin~~~~~y~~l~~~~-~~ls~~e~i~ll~~~P~Lik 90 (112)
T cd03034 34 TPPTAAELRELLAKL----GIS-----PRDLLRTKEAPYKELGLAD-PELSDEELIDAMAAHPILIE 90 (112)
T ss_pred CCcCHHHHHHHHHHc----CCC-----HHHHHhcCCchHHHcCCCc-cCCCHHHHHHHHHhCcCccc
Confidence 456777777777665 322 122232 2344444332 57899999999999998877
No 161
>KOG3449 consensus 60S acidic ribosomal protein P2 [Translation, ribosomal structure and biogenesis]
Probab=54.32 E-value=49 Score=22.80 Aligned_cols=55 Identities=22% Similarity=0.272 Sum_probs=42.2
Q ss_pred HHHHHHhcCCCCCCcccHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhCCCCCCCcCHHHHHHH
Q 028131 109 IAFAFRLYDLRQTGFIEREELKEMVLALLHESDLILSDDVIETIVDKSFSDADTNGDGKIDPEEWKEF 176 (213)
Q Consensus 109 ~~~~F~~~D~d~~G~I~~~El~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~d~dg~Is~~ef~~~ 176 (213)
+..+|-+++.-|+...+..+++.+|..+ |....++.++.++ .... |+ +.+|.+.-
T Consensus 3 yvaAYLL~~lgGn~~psa~DikkIl~sV----G~E~d~e~i~~vi----sel~----GK-~i~ElIA~ 57 (112)
T KOG3449|consen 3 YVAAYLLAVLGGNASPSASDIKKILESV----GAEIDDERINLVL----SELK----GK-DIEELIAA 57 (112)
T ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHh----CcccCHHHHHHHH----HHhc----CC-CHHHHHHH
Confidence 5567777888888899999999999998 9999999988887 4442 33 55665543
No 162
>KOG2871 consensus Uncharacterized conserved protein [Function unknown]
Probab=53.94 E-value=12 Score=31.66 Aligned_cols=33 Identities=24% Similarity=0.371 Sum_probs=29.7
Q ss_pred ChHHHHHHHHHhcCCCCCCcccHHHHHHHHHHH
Q 028131 104 LVEDKIAFAFRLYDLRQTGFIEREELKEMVLAL 136 (213)
Q Consensus 104 ~~~~~~~~~F~~~D~d~~G~I~~~El~~~l~~~ 136 (213)
.+.+.++++|+.+|..+.|+|+-.-++.++...
T Consensus 306 ~~s~q~rR~f~a~d~~d~nfis~s~~~~vm~~~ 338 (449)
T KOG2871|consen 306 NPSEQLRRNFHAYDPEDNNFISCSGLQIVMTAL 338 (449)
T ss_pred CCCHHHHhhhhccCccCCCeeecHHHHHHHHHh
Confidence 446789999999999999999999999998877
No 163
>KOG3866 consensus DNA-binding protein of the nucleobindin family [General function prediction only]
Probab=53.61 E-value=11 Score=31.06 Aligned_cols=88 Identities=15% Similarity=0.299 Sum_probs=53.4
Q ss_pred HHHhhcCCCCCCCcCHHHHHHHHhc-------ccCcch----H------HHHHHHHHhcCCCCCcccHHHHHHHHhhhCC
Q 028131 39 FKKLSSSIFDDGIIHKEEFQLALFR-------NKNKKN----L------FADRIFDLFDLKRNGVIEFGEFVRSLGVFHP 101 (213)
Q Consensus 39 F~~~d~~~~~~G~l~~~e~~~~l~~-------~~~~~~----~------~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~ 101 (213)
|..+|.| ++|.++..++...+.. ...... . ..+.++..+|+|.+..|+.++|+..-..-.
T Consensus 250 F~LHD~N--sDGfldeqELEaLFtkELEKvYdpkNeeDDM~EmeEErlRMREHVMk~vDtNqDRlvtleEFL~~t~~ke- 326 (442)
T KOG3866|consen 250 FALHDLN--SDGFLDEQELEALFTKELEKVYDPKNEEDDMKEMEEERLRMREHVMKQVDTNQDRLVTLEEFLNDTDNKE- 326 (442)
T ss_pred eeeeccC--CcccccHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHhcccchhhhhhHHHHHhhhhhcc-
Confidence 5567777 8999999998754421 111100 0 125577788999999999999998764332
Q ss_pred CCChHHHHHHHHHhcCCCCCCcccHHHHHHHHHH
Q 028131 102 HALVEDKIAFAFRLYDLRQTGFIEREELKEMVLA 135 (213)
Q Consensus 102 ~~~~~~~~~~~F~~~D~d~~G~I~~~El~~~l~~ 135 (213)
.+.+.+.|+. . +..-.-+-+||+.+=+.
T Consensus 327 f~~p~e~WEt----l--~q~~~yTeEEL~~fE~e 354 (442)
T KOG3866|consen 327 FNPPKEEWET----L--GQKKVYTEEELQQFERE 354 (442)
T ss_pred cCCcchhhhh----h--cccccccHHHHHHHHHH
Confidence 2333333332 2 23346677777776543
No 164
>PF01023 S_100: S-100/ICaBP type calcium binding domain; InterPro: IPR013787 The calcium-binding domain found in S100 and CaBP-9k proteins is a subfamily of the EF-hand calcium-binding domain []. S100s are small dimeric acidic calcium and zinc-binding proteins abundant in the brain, with S100B playing an important role in modulating the proliferation and differentiation of neurons and glia cells []. S100 proteins have two different types of calcium-binding sites: a low affinity one with a special structure, and a 'normal' EF-hand type high-affinity site. Calbindin-D9k (CaBP-9k) also belong to this family of proteins, but it does not form dimers. CaBP-9k is a cytosolic protein expressed in a variety of tissues. Although its precise function is unknown, it appears to be under the control of the steroid hormones oestrogen and progesterone in the female reproductive system []. In the intestine, CaBP-9k may be involved in calcium absorption by mediating intracellular diffusion []. This entry represents a subdomain of the calcium-binding domain found in S100, CaBP-9k, and related proteins.; PDB: 2RGI_A 4DUQ_B 2KAY_B 2KAX_A 2CNP_A 1CNP_A 1A03_A 1JWD_B 2JTT_A 1XK4_B ....
Probab=53.46 E-value=40 Score=19.01 Aligned_cols=32 Identities=22% Similarity=0.360 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCcCHHHHHHHH
Q 028131 30 CEVEALYELFKKLSSSIFDDGIIHKEEFQLAL 61 (213)
Q Consensus 30 ~~i~~l~~~F~~~d~~~~~~G~l~~~e~~~~l 61 (213)
..+..+..+|..+....+....++..||+..+
T Consensus 3 ~ai~~iI~vFhkYa~~~Gd~~~Lsk~Elk~Ll 34 (44)
T PF01023_consen 3 KAIETIIDVFHKYAGKEGDKDTLSKKELKELL 34 (44)
T ss_dssp HHHHHHHHHHHHHHTSSSSTTSEEHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCCCCeEcHHHHHHHH
Confidence 34556777788776432245689999999776
No 165
>KOG4004 consensus Matricellular protein Osteonectin/SPARC/BM-40 [Extracellular structures]
Probab=53.06 E-value=6.8 Score=30.06 Aligned_cols=47 Identities=17% Similarity=0.198 Sum_probs=23.9
Q ss_pred CCcccHHHHHHHHhhhCCCCChHHHHHHHHHhcCCCCCCcccHHHHHHHH
Q 028131 84 NGVIEFGEFVRSLGVFHPHALVEDKIAFAFRLYDLRQTGFIEREELKEMV 133 (213)
Q Consensus 84 ~~~i~~~ef~~~~~~~~~~~~~~~~~~~~F~~~D~d~~G~I~~~El~~~l 133 (213)
+|.++-.|+.-+-+.+. +.+.=+...|...|.|+||+|..+|+...+
T Consensus 202 d~~~sh~el~pl~ap~i---pme~c~~~f~e~cd~~nd~~ial~ew~~c~ 248 (259)
T KOG4004|consen 202 DGYLSHTELAPLRAPLI---PMEHCTTRFFETCDLDNDKYIALDEWAGCF 248 (259)
T ss_pred cccccccccccccCCcc---cHHhhchhhhhcccCCCCCceeHHHhhccc
Confidence 45555555544433222 223335555666666666666666655443
No 166
>PRK10026 arsenate reductase; Provisional
Probab=52.54 E-value=32 Score=24.95 Aligned_cols=57 Identities=16% Similarity=0.274 Sum_probs=34.9
Q ss_pred CcccHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhCCCCCCCcCHHHHHHHHHhChhhHh
Q 028131 122 GFIEREELKEMVLALLHESDLILSDDVIETIVDKSFSDADTNGDGKIDPEEWKEFVKKNPSLIK 185 (213)
Q Consensus 122 G~I~~~El~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~d~dg~Is~~ef~~~l~~~~~~~~ 185 (213)
..++.+||..++..+ |. ....+-.--...|.....+. -.++.++++.++..+|.+++
T Consensus 37 ~ppt~~eL~~~l~~~----g~--~~~~lint~~~~yr~L~~~~-~~ls~~e~l~ll~~~P~LIK 93 (141)
T PRK10026 37 TPPTRDELVKLIADM----GI--SVRALLRKNVEPYEELGLAE-DKFTDDQLIDFMLQHPILIN 93 (141)
T ss_pred CCcCHHHHHHHHHhC----CC--CHHHHHHcCCchHHHcCCCc-cCCCHHHHHHHHHhCcccee
Confidence 346777777777654 32 22222111234455555443 35899999999999998877
No 167
>KOG0998 consensus Synaptic vesicle protein EHS-1 and related EH domain proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=51.80 E-value=11 Score=35.78 Aligned_cols=71 Identities=14% Similarity=0.259 Sum_probs=58.3
Q ss_pred CCCHHHHHHHHHHHHHhhcCCCCCCCcCHHHHHHHHhcccCcchHHHHHHHHHhcCCCCCcccHHHHHHHHhhh
Q 028131 26 PFTVCEVEALYELFKKLSSSIFDDGIIHKEEFQLALFRNKNKKNLFADRIFDLFDLKRNGVIEFGEFVRSLGVF 99 (213)
Q Consensus 26 ~ls~~~i~~l~~~F~~~d~~~~~~G~l~~~e~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~ 99 (213)
.++..+...+.++|...|.+ .+|.|+..+....+... ......+..++...|..+.+.+++.+|...+...
T Consensus 276 ~vsp~d~~~~~~if~q~d~~--~dG~I~s~~~~~~f~~~-gl~~~~l~~~w~l~d~~n~~~ls~~ef~~~~~~~ 346 (847)
T KOG0998|consen 276 KVSPSDKQKYSKIFSQVDKD--NDGSISSNEARNIFLPF-GLSKPRLAHVWLLADTQNTGTLSKDEFALAMHLL 346 (847)
T ss_pred ccChHHHHHHHHHHHhcccc--CCCcccccccccccccC-CCChhhhhhhhhhcchhccCcccccccchhhhhh
Confidence 57788888899999999999 99999999998777553 3344456889999999999999999887776543
No 168
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=51.27 E-value=48 Score=22.77 Aligned_cols=57 Identities=21% Similarity=0.314 Sum_probs=34.4
Q ss_pred CcccHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhCCCCCCCcCHHHHHHHHHhChhhHh
Q 028131 122 GFIEREELKEMVLALLHESDLILSDDVIETIVDKSFSDADTNGDGKIDPEEWKEFVKKNPSLIK 185 (213)
Q Consensus 122 G~I~~~El~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~d~dg~Is~~ef~~~l~~~~~~~~ 185 (213)
...+.+|+..++..+ +.. .+.+-.--...|+....+. ..++-++++.++..+|.+++
T Consensus 35 ~~~~~~el~~~~~~~----~~~--~~~l~n~~~~~~k~l~~~~-~~ls~~e~i~~l~~~p~Lik 91 (115)
T cd03032 35 QPLTKEELKEILSLT----ENG--VEDIISTRSKAFKNLNIDI-DELSLSELIRLISEHPSLLR 91 (115)
T ss_pred CcchHHHHHHHHHHh----cCC--HHHHHhcCcHHHHHcCCCc-ccCCHHHHHHHHHhChhhee
Confidence 456677777777655 322 2211111133345544333 56889999999999998876
No 169
>cd01047 ACSF Aerobic Cyclase System Fe-containing subunit (ACSF), ferritin-like diiron-binding domain. Aerobic Cyclase System, Fe-containing subunit (ACSF) is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. Rubrivivax gelatinosus acsF codes for a conserved, putative binuclear iron-cluster-containing protein involved in aerobic oxidative cyclization of Mg-protoporphyrin IX monomethyl ester. AcsF and homologs have a leucine zipper and two copies of the conserved glutamate and histidine residues predicted to act as ligands for iron in the Ex(29-35)DExRH motifs. Several homologs of AcsF are found in a wide range of photosynthetic organisms, including Chlamydomonas reinhardtii Crd1 and Pharbitis nil PNZIP, suggesting that this aerobic oxidative cyclization mechanism is conserved from bacteria to plants.
Probab=50.56 E-value=24 Score=28.92 Aligned_cols=84 Identities=11% Similarity=0.164 Sum_probs=52.1
Q ss_pred hHHHHHHHHHhc--CCCCCCcccHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhCCCCCCCcCHHHHHHHHHh-Ch
Q 028131 105 VEDKIAFAFRLY--DLRQTGFIEREELKEMVLALLHESDLILSDDVIETIVDKSFSDADTNGDGKIDPEEWKEFVKK-NP 181 (213)
Q Consensus 105 ~~~~~~~~F~~~--D~d~~G~I~~~El~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~d~dg~Is~~ef~~~l~~-~~ 181 (213)
.+++++.+...+ |.|....+--+||...... ++++.-...++-+-+.+-.--+|.+=|.|..+-+.. +|
T Consensus 23 ~~~e~~A~l~E~r~DyNr~HF~R~~ef~~~~~~--------~~~e~r~~FidFLerSctaEFSGflLYKEl~rrlk~~nP 94 (323)
T cd01047 23 NREEFEAMLAEFKADYNRHHFVRNDEFDQAADK--------IDPELRQIFLEFLERSCTSEFSGFLLYKELGRRLKNTNP 94 (323)
T ss_pred hHHHHHHHHHHHHhCcccccccCCchhhhhhhh--------CCHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHcccCCc
Confidence 345566665555 5566667777777765432 334434444444445555555789999998888863 78
Q ss_pred hhHhhcCchhhhhhh
Q 028131 182 SLIKNMTLPYLKDIT 196 (213)
Q Consensus 182 ~~~~~~~~~~~~~~~ 196 (213)
.+.+.+.+...++.|
T Consensus 95 ~lae~F~lMaRDEAR 109 (323)
T cd01047 95 VVAELFRLMARDEAR 109 (323)
T ss_pred HHHHHHHHHhhhHHH
Confidence 888877666555444
No 170
>CHL00185 ycf59 magnesium-protoporphyrin IX monomethyl ester cyclase; Provisional
Probab=50.13 E-value=38 Score=28.17 Aligned_cols=85 Identities=19% Similarity=0.169 Sum_probs=55.8
Q ss_pred ChHHHHHHHHHhc--CCCCCCcccHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhCCCCCCCcCHHHHHHHHH-hC
Q 028131 104 LVEDKIAFAFRLY--DLRQTGFIEREELKEMVLALLHESDLILSDDVIETIVDKSFSDADTNGDGKIDPEEWKEFVK-KN 180 (213)
Q Consensus 104 ~~~~~~~~~F~~~--D~d~~G~I~~~El~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~d~dg~Is~~ef~~~l~-~~ 180 (213)
..+++++.+...+ |.|....+--+||.+.+. +++++.-...++-+-+.+-.--+|.+=|.|..+-+. .+
T Consensus 38 ~~~~e~~A~l~E~r~DyNr~HF~R~~eF~~~~d--------~l~~e~r~~FidFLerScTaEFSGflLYKEl~rrlk~~n 109 (351)
T CHL00185 38 SNIEEIEAILEEFRADYNQQHFIRDNEFNQSWS--------NLDEKTKSLFVEFLERSCTAEFSGFLLYKELSRKLKDKN 109 (351)
T ss_pred hhHHHHHHHHHHHHhCccccccccChhhhhchh--------hCCHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhccCC
Confidence 3445566666655 566777777778776543 345554444454444555556679999999999886 47
Q ss_pred hhhHhhcCchhhhhhh
Q 028131 181 PSLIKNMTLPYLKDIT 196 (213)
Q Consensus 181 ~~~~~~~~~~~~~~~~ 196 (213)
|.+.+.+++...++.|
T Consensus 110 P~lae~F~lMaRDEAR 125 (351)
T CHL00185 110 PLLAEGFLLMSRDEAR 125 (351)
T ss_pred cHHHHHHHHHhhhhHH
Confidence 8888877766555544
No 171
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=48.86 E-value=1e+02 Score=22.51 Aligned_cols=63 Identities=13% Similarity=0.117 Sum_probs=41.6
Q ss_pred cCCCCCcccHHHHHHHHh--hhCCCCChHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHhhhcCC
Q 028131 80 DLKRNGVIEFGEFVRSLG--VFHPHALVEDKIAFAFRLYDLRQTGFIEREELKEMVLALLHESDL 142 (213)
Q Consensus 80 d~~~~~~i~~~ef~~~~~--~~~~~~~~~~~~~~~F~~~D~d~~G~I~~~El~~~l~~~~~~~~~ 142 (213)
.......++-..|..+|. .+.........+..+|..+-..+...|++++|..+|..+-...+.
T Consensus 12 G~~~~~~m~~~~F~Kl~kD~~i~d~k~t~tdvDiiF~Kvk~k~~~~I~f~~F~~aL~~lA~~~~~ 76 (154)
T PF05517_consen 12 GKKNGTEMDSKNFAKLCKDCGIIDKKLTSTDVDIIFSKVKAKGARKITFEQFLEALAELAEKKGK 76 (154)
T ss_dssp STSTSSEEEHHHHHHHHHHTSS--SSS-HHHHHHHHHHHT-SS-SEEEHHHHHHHHHHHHHHHSC
T ss_pred cCCccccccHHHHHHHHHHcCCCCCCCchHHHHHHHHHhhcCCCcccCHHHHHHHHHHHHHHhhc
Confidence 333445677777877764 222234567889999999877777789999999999877544444
No 172
>PTZ00373 60S Acidic ribosomal protein P2; Provisional
Probab=48.05 E-value=64 Score=22.40 Aligned_cols=41 Identities=20% Similarity=0.292 Sum_probs=33.0
Q ss_pred HHHHHHhcCCCCCCcccHHHHHHHHHHHhhhcCCCCCHHHHHHHH
Q 028131 109 IAFAFRLYDLRQTGFIEREELKEMVLALLHESDLILSDDVIETIV 153 (213)
Q Consensus 109 ~~~~F~~~D~d~~G~I~~~El~~~l~~~~~~~~~~~~~~~~~~~~ 153 (213)
+..+|-+.-..|+..++.+++..+|.+. |..+.+..+..++
T Consensus 5 yvaAYlL~~lgG~~~pTaddI~kIL~Aa----GveVd~~~~~l~~ 45 (112)
T PTZ00373 5 YVAAYLMCVLGGNENPTKKEVKNVLSAV----NADVEDDVLDNFF 45 (112)
T ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHc----CCCccHHHHHHHH
Confidence 4455666666777789999999999998 9999988887777
No 173
>PF05099 TerB: Tellurite resistance protein TerB; InterPro: IPR007791 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Direct interaction between DnaK and djlA is needed for the induction of the wcaABCDE operon which is involved in the synthesis of a colanic acid polysaccharide capsule. The colanic acid capsule may help the bacterium survive conditions outside the host [, ]; PDB: 2H5N_D 2JXU_A.
Probab=46.99 E-value=67 Score=22.55 Aligned_cols=22 Identities=18% Similarity=0.013 Sum_probs=8.9
Q ss_pred CCCCCHHHHHHHHHHHHHhhCC
Q 028131 141 DLILSDDVIETIVDKSFSDADT 162 (213)
Q Consensus 141 ~~~~~~~~~~~~~~~~f~~~d~ 162 (213)
...+++++...++..++..+..
T Consensus 88 ~~~~~~~~r~~ll~~l~~ia~A 109 (140)
T PF05099_consen 88 RDSLSPEEREDLLRMLIAIAYA 109 (140)
T ss_dssp CTS--HHHHHHHHHHHHHHCTC
T ss_pred HHhhchHHHHHHHHHHHHHHhc
Confidence 3334444444444444444433
No 174
>PF02864 STAT_bind: STAT protein, DNA binding domain; InterPro: IPR013801 The STAT protein (Signal Transducers and Activators of Transcription) family contains transcription factors that are specifically activated to regulate gene transcription when cells encounter cytokines and growth factors, hence they act as signal transducers in the cytoplasm and transcription activators in the nucleus []. Binding of these factors to cell-surface receptors leads to receptor autophosphorylation at a tyrosine, the phosphotyrosine being recognised by the STAT SH2 domain, which mediates the recruitment of STAT proteins from the cytosol and their association with the activated receptor. The STAT proteins are then activated by phosphorylation via members of the JAK family of protein kinases, causing them to dimerise and translocated to the nucleus, where they bind to specific promoter sequences in target genes. In mammals, STATs comprise a family of seven structurally and functionally related proteins: Stat1, Stat2, Stat3, Stat4, Stat5a and Stat5b, Stat6. STAT proteins play a critical role in regulating innate and acquired host immune responses. Dysregulation of at least two STAT signalling cascades (i.e. Stat3 and Stat5) is associated with cellular transformation. Signalling through the JAK/STAT pathway is initiated when a cytokine binds to its corresponding receptor. This leads to conformational changes in the cytoplasmic portion of the receptor, initiating activation of receptor associated members of the JAK family of kinases. The JAKs, in turn, mediate phosphorylation at the specific receptor tyrosine residues, which then serve as docking sites for STATs and other signalling molecules. Once recruited to the receptor, STATs also become phosphorylated by JAKs, on a single tyrosine residue. Activated STATs dissociate from the receptor, dimerise, translocate to the nucleus and bind to members of the GAS (gamma activated site) family of enhancers. The seven STAT proteins identified in mammals range in size from 750 and 850 amino acids. The chromosomal distribution of these STATs, as well as the identification of STATs in more primitive eukaryotes, suggest that this family arose from a single primordial gene. STATs share structurally and functionally conserved domains including: an N-terminal domain that strengthens interactions between STAT dimers on adjacent DNA-binding sites; a coiled-coil STAT domain that is implicated in protein-protein interactions; a DNA-binding domain with an immunoglobulin-like fold similar to p53 tumour suppressor protein; an EF-hand-like linker domain connecting the DNA-binding and SH2 domains; an SH2 domain (IPR000980 from INTERPRO) that acts as a phosphorylation-dependent switch to control receptor recognition and DNA-binding; and a C-terminal transactivation domain []. The crystal structure of the N terminus of Stat4 reveals a dimer. The interface of this dimer is formed by a ring-shaped element consisting of five short helices. Several studies suggest that this N-terminal dimerisation promotes cooperativity of binding to tandem GAS elements and with the transcriptional coactivator CBP/p300. This entry represents the DNA-binding domain, which has an immunoglobulin-like structural fold.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0004871 signal transducer activity, 0006355 regulation of transcription, DNA-dependent, 0007165 signal transduction, 0005634 nucleus; PDB: 1YVL_A 1BF5_A 1Y1U_B 3CWG_B 1BG1_A.
Probab=46.85 E-value=38 Score=27.16 Aligned_cols=54 Identities=15% Similarity=0.163 Sum_probs=36.9
Q ss_pred cccHHHHHHHHHH-HhhhcCCCCCHHHHHHHHHHHHHhhCCCCCCCcCHHHHHHH
Q 028131 123 FIEREELKEMVLA-LLHESDLILSDDVIETIVDKSFSDADTNGDGKIDPEEWKEF 176 (213)
Q Consensus 123 ~I~~~El~~~l~~-~~~~~~~~~~~~~~~~~~~~~f~~~d~d~dg~Is~~ef~~~ 176 (213)
.++..+|.++|.. +....|..++++++..+...+|..-....++.||+..|.+-
T Consensus 178 ~v~W~ql~~~L~~~F~~~~~R~L~~~~L~~L~~Kl~~~~~~~~~~~isw~~F~Ke 232 (254)
T PF02864_consen 178 KVPWPQLSEALSWQFSSETGRGLTDEQLQYLAEKLFGQNSSYNNMLISWSQFCKE 232 (254)
T ss_dssp EEEHHHHHHHHHHHHHHHSS----HHHHHHHHHHHHTSSS-GCC-EEEHHHHHTS
T ss_pred cccHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHhCCcccCCCceeEHHHhhhc
Confidence 4677788888874 44556899999999999988887766556789999999653
No 175
>cd00086 homeodomain Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
Probab=45.47 E-value=16 Score=21.35 Aligned_cols=29 Identities=28% Similarity=0.288 Sum_probs=24.3
Q ss_pred cCCCCCCchHhhhhcCCCCHHHHHHHHHH
Q 028131 10 KQTPGYEEPTVLAAETPFTVCEVEALYEL 38 (213)
Q Consensus 10 ~~~~~~~~~~~l~~~~~ls~~~i~~l~~~ 38 (213)
.++|+..++..|+..++++..+|..++..
T Consensus 22 ~~~P~~~~~~~la~~~~l~~~qV~~WF~n 50 (59)
T cd00086 22 NPYPSREEREELAKELGLTERQVKIWFQN 50 (59)
T ss_pred CCCCCHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 45777889999999999999999888754
No 176
>PF12174 RST: RCD1-SRO-TAF4 (RST) plant domain; InterPro: IPR022003 This domain is found in many plant proteins including SROs and RCD1s; it is required for interaction with multiple plant transcription factors.
Probab=45.17 E-value=39 Score=21.30 Aligned_cols=49 Identities=16% Similarity=0.190 Sum_probs=35.0
Q ss_pred CCcccHHHHHHHHhhhCCCCChHHHHHHHHHhcCCCCCCcccHHHHHHHHHHH
Q 028131 84 NGVIEFGEFVRSLGVFHPHALVEDKIAFAFRLYDLRQTGFIEREELKEMVLAL 136 (213)
Q Consensus 84 ~~~i~~~ef~~~~~~~~~~~~~~~~~~~~F~~~D~d~~G~I~~~El~~~l~~~ 136 (213)
+.-++|..+...+.... +.+++..+...|+.=..+.|+.+||...++.+
T Consensus 6 sp~~~F~~L~~~l~~~l----~~~~~~~l~~~Y~~~k~~kIsR~~fvr~lR~I 54 (70)
T PF12174_consen 6 SPWMPFPMLFSALSKHL----PPSKMDLLQKHYEEFKKKKISREEFVRKLRQI 54 (70)
T ss_pred CCcccHHHHHHHHHHHC----CHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 34467666666665433 45667777777776678899999999998876
No 177
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=44.85 E-value=59 Score=22.36 Aligned_cols=58 Identities=14% Similarity=0.283 Sum_probs=33.9
Q ss_pred CcccHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhCCCCCCCcCHHHHHHHHHhChhhHh
Q 028131 122 GFIEREELKEMVLALLHESDLILSDDVIETIVDKSFSDADTNGDGKIDPEEWKEFVKKNPSLIK 185 (213)
Q Consensus 122 G~I~~~El~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~d~dg~Is~~ef~~~l~~~~~~~~ 185 (213)
-.++.+||..++..+ |.....+.+. --...|.....+. ..++-+++.+++..+|.+++
T Consensus 34 ~p~t~~el~~~l~~~----g~~~~~~lin-~~~~~~~~l~~~~-~~ls~~e~i~~l~~~P~Lik 91 (114)
T TIGR00014 34 NPPTKSELEAIFAKL----GLTVAREMIR-TKEALYKELGLSD-PNLSDQELLDAMVAHPILLE 91 (114)
T ss_pred CCcCHHHHHHHHHHc----CCchHHHHHh-cCCcHHHHcCCCc-cCCCHHHHHHHHHHCcCccc
Confidence 456777777777665 4221011111 1123334443332 46788999999999998877
No 178
>PF07879 PHB_acc_N: PHB/PHA accumulation regulator DNA-binding domain; InterPro: IPR012909 This domain is found at the N terminus of the polyhydroxyalkanoate (PHA) synthesis regulators. These regulators have been shown to directly bind DNA and PHA []. The invariant nature of this domain compared to the C-terminal IPR007897 from INTERPRO domain(s) suggests that it contains the DNA-binding function.
Probab=43.79 E-value=19 Score=22.21 Aligned_cols=22 Identities=32% Similarity=0.658 Sum_probs=19.9
Q ss_pred HhcCCCCCCcccHHHHHHHHHH
Q 028131 114 RLYDLRQTGFIEREELKEMVLA 135 (213)
Q Consensus 114 ~~~D~d~~G~I~~~El~~~l~~ 135 (213)
++||...+.+|+.+++.+++..
T Consensus 10 RLYDT~~s~YiTL~di~~lV~~ 31 (64)
T PF07879_consen 10 RLYDTETSSYITLEDIAQLVRE 31 (64)
T ss_pred ccccCCCceeEeHHHHHHHHHC
Confidence 5789999999999999999875
No 179
>cd05833 Ribosomal_P2 Ribosomal protein P2. This subfamily represents the eukaryotic large ribosomal protein P2. Eukaryotic P1 and P2 are functionally equivalent to the bacterial protein L7/L12, but are not homologous to L7/L12. P2 is located in the L12 stalk, with proteins P1, P0, L11, and 28S rRNA. P1 and P2 are the only proteins in the ribosome to occur as multimers, always appearing as sets of heterodimers. Recent data indicate that eukaryotes have four copies (two heterodimers), while most archaeal species contain six copies of L12p (three homodimers). Bacteria may have four or six copies of L7/L12 (two or three homodimers) depending on the species. Experiments using S. cerevisiae P1 and P2 indicate that P1 proteins are positioned more internally with limited reactivity in the C-terminal domains, while P2 proteins seem to be more externally located and are more likely to interact with other cellular components. In lower eukaryotes, P1 and P2 are further subdivided into P1A, P1B, P2
Probab=43.62 E-value=81 Score=21.75 Aligned_cols=57 Identities=18% Similarity=0.209 Sum_probs=39.8
Q ss_pred HHHHHHhcCCCCCCcccHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhCCCCCCCcCHHHHHHHHH
Q 028131 109 IAFAFRLYDLRQTGFIEREELKEMVLALLHESDLILSDDVIETIVDKSFSDADTNGDGKIDPEEWKEFVK 178 (213)
Q Consensus 109 ~~~~F~~~D~d~~G~I~~~El~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~d~dg~Is~~ef~~~l~ 178 (213)
+..+|-+.-..|+..+|.+++..+|... |..+.+..+..++ ..+. ..+.++.+.-..
T Consensus 3 yvaAylL~~l~g~~~pTa~dI~~IL~Aa----GveVe~~~~~lf~----~~L~-----GKdi~eLIa~g~ 59 (109)
T cd05833 3 YVAAYLLAVLGGNASPSAADVKKILGSV----GVEVDDEKLNKVI----SELE-----GKDVEELIAAGK 59 (109)
T ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHc----CCCccHHHHHHHH----HHHc-----CCCHHHHHHHhH
Confidence 3455666666777899999999999998 9888888777766 3442 134566655443
No 180
>PRK12559 transcriptional regulator Spx; Provisional
Probab=42.39 E-value=63 Score=22.95 Aligned_cols=57 Identities=18% Similarity=0.290 Sum_probs=35.3
Q ss_pred CcccHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhCCCCCCCcCHHHHHHHHHhChhhHh
Q 028131 122 GFIEREELKEMVLALLHESDLILSDDVIETIVDKSFSDADTNGDGKIDPEEWKEFVKKNPSLIK 185 (213)
Q Consensus 122 G~I~~~El~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~d~dg~Is~~ef~~~l~~~~~~~~ 185 (213)
..++.+||..++... +.. ...+-.--...|...+.+. -.++-++++.++..+|.+++
T Consensus 35 ~~~s~~el~~~l~~~----~~g--~~~lin~~~~~~k~l~~~~-~~ls~~e~i~ll~~~P~Lik 91 (131)
T PRK12559 35 NSMTVDELKSILRLT----EEG--ATEIISTRSKTFQDLNINI-EELSLNEFYKLIIEHPLMLR 91 (131)
T ss_pred CcCCHHHHHHHHHHc----CCC--HHHHHhcCcHHHHhCCCCc-ccCCHHHHHHHHHhCcceEe
Confidence 456777777777654 322 1111111233445555443 46788999999999998887
No 181
>COG3793 TerB Tellurite resistance protein [Inorganic ion transport and metabolism]
Probab=39.88 E-value=86 Score=22.81 Aligned_cols=66 Identities=23% Similarity=0.250 Sum_probs=41.6
Q ss_pred CCCcccHHHHHHHHHHHhhhcCCCCC-HHHHHHHHHHHHHhhCCCCC-CCcCHHHHHHHHHhChhhHh
Q 028131 120 QTGFIEREELKEMVLALLHESDLILS-DDVIETIVDKSFSDADTNGD-GKIDPEEWKEFVKKNPSLIK 185 (213)
Q Consensus 120 ~~G~I~~~El~~~l~~~~~~~~~~~~-~~~~~~~~~~~f~~~d~d~d-g~Is~~ef~~~l~~~~~~~~ 185 (213)
-||-++.+|.+.++..+-........ .+.+..+.+.+-..++.|.+ |++...+.+..+...++..+
T Consensus 37 adg~~~~~e~~~~~~~~~s~~~L~~f~~~~i~~~~~~~~~~~~~d~~~gk~ea~~~I~~lk~d~e~Ae 104 (144)
T COG3793 37 ADGEVDSEEKQKMVQFLRSSAALSVFDSNEINEIFETLVGSFDTDFEIGKREAMKEIEDLKHDTEAAE 104 (144)
T ss_pred cccccChHHHHHHHHHHHcChhhhhccHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhcCChHHHH
Confidence 35778888888877765222122222 22444555555566777777 78888888888888877555
No 182
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=39.88 E-value=64 Score=22.96 Aligned_cols=57 Identities=14% Similarity=0.220 Sum_probs=35.2
Q ss_pred CcccHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhCCCCCCCcCHHHHHHHHHhChhhHh
Q 028131 122 GFIEREELKEMVLALLHESDLILSDDVIETIVDKSFSDADTNGDGKIDPEEWKEFVKKNPSLIK 185 (213)
Q Consensus 122 G~I~~~El~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~d~dg~Is~~ef~~~l~~~~~~~~ 185 (213)
..++.+||..++..+ |.. .+.+-.--...|...+.+ ...++-++++.++..+|.+++
T Consensus 35 ~~~s~~eL~~~l~~~----~~~--~~~lin~~~~~~k~L~~~-~~~ls~~e~i~ll~~~P~Lik 91 (132)
T PRK13344 35 EPLTKEEILAILTKT----ENG--IESIVSSKNRYAKALDCD-IEELSVNEVIDLIQENPRILK 91 (132)
T ss_pred CCCCHHHHHHHHHHh----CCC--HHHhhccCcHHHHhCCcc-hhcCCHHHHHHHHHhCcccee
Confidence 457778888887765 322 111111113334444433 257889999999999998876
No 183
>PF07105 DUF1367: Protein of unknown function (DUF1367); InterPro: IPR009797 This entry is represented by Bacteriophage VT2phi_272, P37. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several highly conserved, hypothetical bacterial and phage proteins of around 200 resides in length. The function of this family is unknown.
Probab=39.50 E-value=1.4e+02 Score=22.92 Aligned_cols=81 Identities=11% Similarity=0.178 Sum_probs=44.9
Q ss_pred HHHHHHHHhcCCCCCCcccHHH---HHHHHHHHhhhcCCC-CCHHHHHHHHHHHHHhhCCCCCCCcCHHHHHHHHHhChh
Q 028131 107 DKIAFAFRLYDLRQTGFIEREE---LKEMVLALLHESDLI-LSDDVIETIVDKSFSDADTNGDGKIDPEEWKEFVKKNPS 182 (213)
Q Consensus 107 ~~~~~~F~~~D~d~~G~I~~~E---l~~~l~~~~~~~~~~-~~~~~~~~~~~~~f~~~d~d~dg~Is~~ef~~~l~~~~~ 182 (213)
..+..+|+.+-+.| |.|+..| +..+.+.+-...|.+ ...+-.+..+..+=.....+....=+++.|++|+.-..+
T Consensus 52 aLL~lgFeyW~P~g-g~is~~E~~lv~g~v~~la~~~g~~~~l~~~A~~yL~~va~~R~~~~~~~k~feafR~wvti~AG 130 (196)
T PF07105_consen 52 ALLNLGFEYWEPTG-GTISPAERKLVRGFVKFLASYAGSEDALQEAADQYLAKVAKKRARDIEAEKSFEAFRKWVTIEAG 130 (196)
T ss_pred HHHHHHHHHccCCC-CccCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhccchhhhCHHHHHHHHHHhcc
Confidence 35778888888877 8898888 222332222222322 112223333322223333344455679999999987766
Q ss_pred hHhhcC
Q 028131 183 LIKNMT 188 (213)
Q Consensus 183 ~~~~~~ 188 (213)
......
T Consensus 131 ~yd~~~ 136 (196)
T PF07105_consen 131 FYDIVP 136 (196)
T ss_pred cceeee
Confidence 666443
No 184
>PF03979 Sigma70_r1_1: Sigma-70 factor, region 1.1; InterPro: IPR007127 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. This entry represents Region 1.1 which modulates DNA binding by region 2 and 4 when sigma is unbound by the core RNA polymerase [, ]. Region 1.1 is also involved in promoter binding.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2K6X_A.
Probab=39.01 E-value=43 Score=21.58 Aligned_cols=29 Identities=21% Similarity=0.457 Sum_probs=17.2
Q ss_pred CCCcccHHHHHHHHHHHhhhcCCCCCHHHHHHHHH
Q 028131 120 QTGFIEREELKEMVLALLHESDLILSDDVIETIVD 154 (213)
Q Consensus 120 ~~G~I~~~El~~~l~~~~~~~~~~~~~~~~~~~~~ 154 (213)
..|+||.+|+..+|. ...++++.++.++.
T Consensus 18 ~~G~lT~~eI~~~L~------~~~~~~e~id~i~~ 46 (82)
T PF03979_consen 18 KKGYLTYDEINDALP------EDDLDPEQIDEIYD 46 (82)
T ss_dssp HHSS-BHHHHHHH-S-------S---HHHHHHHHH
T ss_pred hcCcCCHHHHHHHcC------ccCCCHHHHHHHHH
Confidence 468899999988884 23577777777763
No 185
>PF11569 Homez: Homeodomain leucine-zipper encoding, Homez; PDB: 2YS9_A.
Probab=38.77 E-value=35 Score=20.48 Aligned_cols=23 Identities=13% Similarity=0.214 Sum_probs=17.4
Q ss_pred CCchHhhhhcCCCCHHHHHHHHH
Q 028131 15 YEEPTVLAAETPFTVCEVEALYE 37 (213)
Q Consensus 15 ~~~~~~l~~~~~ls~~~i~~l~~ 37 (213)
..++..|+..++||.++++.++.
T Consensus 25 E~DL~~L~~kS~ms~qqVr~WFa 47 (56)
T PF11569_consen 25 EEDLDELCDKSRMSYQQVRDWFA 47 (56)
T ss_dssp TTHHHHHHHHTT--HHHHHHHHH
T ss_pred HhhHHHHHHHHCCCHHHHHHHHH
Confidence 47888899999999999988874
No 186
>cd07316 terB_like_DjlA N-terminal tellurium resistance protein terB-like domain of heat shock DnaJ-like proteins. Tellurium resistance terB-like domain of the DnaJ-like DjlA proteins. This family represents the terB-like domain of DjlA-like proteins, a subgroup of heat shock DnaJ-like proteins. Escherichia coli DjlA is a type III membrane protein with a small N-terminal transmembrane region and DnaJ-like domain on the extreme C-terminus. Overproduction has been shown to activate the RcsC pathway, which regulates the production of the capsular exopolysaccharide colanic acid. The specific function of this domain is unknown.
Probab=38.75 E-value=1.2e+02 Score=20.12 Aligned_cols=10 Identities=40% Similarity=0.677 Sum_probs=5.1
Q ss_pred CCCcCHHHHH
Q 028131 49 DGIIHKEEFQ 58 (213)
Q Consensus 49 ~G~l~~~e~~ 58 (213)
||.++..|..
T Consensus 13 DG~v~~~E~~ 22 (106)
T cd07316 13 DGRVSEAEIQ 22 (106)
T ss_pred cCCcCHHHHH
Confidence 5555555543
No 187
>PF05099 TerB: Tellurite resistance protein TerB; InterPro: IPR007791 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Direct interaction between DnaK and djlA is needed for the induction of the wcaABCDE operon which is involved in the synthesis of a colanic acid polysaccharide capsule. The colanic acid capsule may help the bacterium survive conditions outside the host [, ]; PDB: 2H5N_D 2JXU_A.
Probab=37.02 E-value=54 Score=23.05 Aligned_cols=79 Identities=22% Similarity=0.194 Sum_probs=41.9
Q ss_pred CCCCcCHHHHHHHHh---cccCcchHHHHHHHHHhcCCCCCcccHHHHHHHHhhhCCCCChHHHHHHHHHhcCCCCCCcc
Q 028131 48 DDGIIHKEEFQLALF---RNKNKKNLFADRIFDLFDLKRNGVIEFGEFVRSLGVFHPHALVEDKIAFAFRLYDLRQTGFI 124 (213)
Q Consensus 48 ~~G~l~~~e~~~~l~---~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~F~~~D~d~~G~I 124 (213)
-||.++..|...+.. .....+......+...++.......++.+++..+....+......-+..++.+.-.| |.+
T Consensus 36 aDG~v~~~E~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~r~~ll~~l~~ia~AD--G~~ 113 (140)
T PF05099_consen 36 ADGEVDPEEIEAIRQLLAERFGLSPEEAEELIELADELKQEPIDLEELLRELRDSLSPEEREDLLRMLIAIAYAD--GEI 113 (140)
T ss_dssp TTSS--CHHHHHHHHHHHHCGCGSCHHHHHHHHHHCHHHHHCCHHHHHHHHHCTS--HHHHHHHHHHHHHHCTCT--TC-
T ss_pred cCCCCCHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhchHHHHHHHHHHHHHHhcC--CCC
Confidence 589999999774432 222223344456666665444446778888776654332122234566777777765 455
Q ss_pred cHHH
Q 028131 125 EREE 128 (213)
Q Consensus 125 ~~~E 128 (213)
+..|
T Consensus 114 ~~~E 117 (140)
T PF05099_consen 114 SPEE 117 (140)
T ss_dssp SCCH
T ss_pred CHHH
Confidence 5554
No 188
>PF12486 DUF3702: ImpA domain protein ; InterPro: IPR021069 This entry represents a conserved region located towards the C-terminal end of ImpA and related proteins. ImpA is an inner membrane protein, which has been suggested to be involved with proteins that are exported and associated with colony variations in Actinobacillus actinomycetemcomitans []. Note that many members are hypothetical proteins.
Probab=36.83 E-value=78 Score=23.18 Aligned_cols=39 Identities=13% Similarity=0.175 Sum_probs=29.2
Q ss_pred HHHHHHhcCCCCCCcccHHHHHHHHHHHhhhcCCCCCHH
Q 028131 109 IAFAFRLYDLRQTGFIEREELKEMVLALLHESDLILSDD 147 (213)
Q Consensus 109 ~~~~F~~~D~d~~G~I~~~El~~~l~~~~~~~~~~~~~~ 147 (213)
+..-....|.++.+|||..||+.++=.+....+..++.+
T Consensus 71 L~~rL~~le~~rg~Y~TiSeLKT~vy~i~q~l~~~~P~E 109 (148)
T PF12486_consen 71 LADRLNQLEEQRGKYMTISELKTAVYQIQQSLNQSVPLE 109 (148)
T ss_pred HHHHHHHHHHhcCCceeHHHHHHHHHHHHHHhcCCCCHH
Confidence 455556678888889999999999887766666666644
No 189
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=36.31 E-value=1.1e+02 Score=21.59 Aligned_cols=57 Identities=16% Similarity=0.286 Sum_probs=33.5
Q ss_pred CcccHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhCCCCCCCcCHHHHHHHHHhChhhHh
Q 028131 122 GFIEREELKEMVLALLHESDLILSDDVIETIVDKSFSDADTNGDGKIDPEEWKEFVKKNPSLIK 185 (213)
Q Consensus 122 G~I~~~El~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~d~dg~Is~~ef~~~l~~~~~~~~ 185 (213)
...+.+++.++++.+ +.. .+.+-.--...|.....+. -.++-++++.++..+|.+++
T Consensus 35 ~~~~~~eL~~~l~~~----~~g--~~~lin~~~~~~k~l~~~~-~~ls~~e~i~ll~~~p~Lik 91 (131)
T PRK01655 35 SPLTIDEIKQILRMT----EDG--TDEIISTRSKVFQKLNVDV-ESLSLQDLIKLISDNPGLLR 91 (131)
T ss_pred ChhhHHHHHHHHHHh----cCC--HHHHHhcCcHHHHhCCCCc-ccCCHHHHHHHHHhCcceEe
Confidence 345566777766654 322 1111111133345554333 46889999999999998876
No 190
>PF09336 Vps4_C: Vps4 C terminal oligomerisation domain; InterPro: IPR015415 This domain is found at the C-terminal of ATPase proteins involved in vacuolar sorting. It forms an alpha helix structure and is required for oligomerisation []. ; PDB: 1XWI_A 3EIH_C 2QPA_C 3EIE_A 2RKO_A 2QP9_X 3MHV_C 3CF3_C 3CF1_A 3CF2_A ....
Probab=36.16 E-value=50 Score=20.14 Aligned_cols=27 Identities=15% Similarity=0.181 Sum_probs=21.1
Q ss_pred cccHHHHHHHHHHHhhhcCCCCCHHHHHHHH
Q 028131 123 FIEREELKEMVLALLHESDLILSDDVIETIV 153 (213)
Q Consensus 123 ~I~~~El~~~l~~~~~~~~~~~~~~~~~~~~ 153 (213)
.|+.++|..+|... .+.++.++++.+.
T Consensus 29 ~it~~DF~~Al~~~----kpSVs~~dl~~ye 55 (62)
T PF09336_consen 29 PITMEDFEEALKKV----KPSVSQEDLKKYE 55 (62)
T ss_dssp HBCHHHHHHHHHTC----GGSS-HHHHHHHH
T ss_pred CCCHHHHHHHHHHc----CCCCCHHHHHHHH
Confidence 47888999988887 8888888887765
No 191
>PF00427 PBS_linker_poly: Phycobilisome Linker polypeptide; InterPro: IPR001297 Phycobilisomes (PBSs) are the major light-harvesting systems in cyanobacteria and red algae. PBS is a supercomplex that is composed of a core complex and multiple peripheral rod complexes. Typically, the core consists of two or five cylinders lying on the membrane with, in most cases, multiple rods radiating from the core to form a hemidiscoidal structure. The building units of the core cylinders and the peripheral rods are trimeric and hexameric discs, in which a monomer consists of a pair of related phycobiliproteins (PBPs), such as phycorerythrins, phycoerythrocyanins, phycocyanins, and allophycocyanins. The discs are connected to each other via specific linker polypeptides to form peripheral rods or core cylinders. Linker polypeptides share a conserved domain of ~180 residues, which can be present in one or multiple copies [, , , , ].; GO: 0015979 photosynthesis, 0030089 phycobilisome; PDB: 2L8V_A 2KY4_A 3OSJ_D 2L06_A 3NPH_B 2L3W_A 3PRU_C 3OHW_A.
Probab=35.95 E-value=1.1e+02 Score=21.84 Aligned_cols=58 Identities=17% Similarity=0.130 Sum_probs=33.7
Q ss_pred ccHHHHHHHHHHHhhh-cCCCCCH-HHHHHHHHHHHHhhCCCCCCCcCHHHHHHHHHhChhhHhhc
Q 028131 124 IEREELKEMVLALLHE-SDLILSD-DVIETIVDKSFSDADTNGDGKIDPEEWKEFVKKNPSLIKNM 187 (213)
Q Consensus 124 I~~~El~~~l~~~~~~-~~~~~~~-~~~~~~~~~~f~~~d~d~dg~Is~~ef~~~l~~~~~~~~~~ 187 (213)
.+.+++..++.+.+.+ .|..... .+-..-++ ..+ .+|.||..||++.+....-+.+.+
T Consensus 5 ~s~~~~~~vI~AaYrQVf~~~~~~~~er~~~lE---Sql---rng~IsVreFVr~La~S~~yr~~f 64 (131)
T PF00427_consen 5 SSEEELEAVIRAAYRQVFGNDHPMESERLISLE---SQL---RNGQISVREFVRALAKSELYRKRF 64 (131)
T ss_dssp S-HHHHHHHHHHHHHHHHSSSSSHCSHHTHHHH---HHH---HTTSS-HHHHHHHHHTSHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhcCccchhhhccchHH---HHH---HcCCCcHHHHHHHHHcCHHHHHHH
Confidence 4667777777777665 2333222 11111122 222 248999999999999988777644
No 192
>smart00389 HOX Homeodomain. DNA-binding factors that are involved in the transcriptional regulation of key developmental processes
Probab=35.75 E-value=27 Score=20.15 Aligned_cols=28 Identities=25% Similarity=0.337 Sum_probs=22.6
Q ss_pred cCCCCCCchHhhhhcCCCCHHHHHHHHH
Q 028131 10 KQTPGYEEPTVLAAETPFTVCEVEALYE 37 (213)
Q Consensus 10 ~~~~~~~~~~~l~~~~~ls~~~i~~l~~ 37 (213)
.++|+..++..|++..+++..+|..++.
T Consensus 22 ~~~P~~~~~~~la~~~~l~~~qV~~WF~ 49 (56)
T smart00389 22 NPYPSREEREELAAKLGLSERQVKVWFQ 49 (56)
T ss_pred CCCCCHHHHHHHHHHHCcCHHHHHHhHH
Confidence 3467778899999999999999887764
No 193
>TIGR02029 AcsF magnesium-protoporphyrin IX monomethyl ester aerobic oxidative cyclase. This model respresents the oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under aerobic conditions. This enzyme is believed to utilize a binuclear iron center and molecular oxygen. There are two isoforms of this enzyme in some plants and cyanobacterai which are differentially regulated based on the levels of copper and oxygen. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under aerobic conditions (a separate enzyme, BchE, acts under anaerobic conditions). This enzyme is found in plants, cyanobacteria and other photosynthetic bacteria.
Probab=34.24 E-value=80 Score=26.21 Aligned_cols=85 Identities=13% Similarity=0.160 Sum_probs=51.5
Q ss_pred ChHHHHHHHHHhc--CCCCCCcccHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhCCCCCCCcCHHHHHHHHH-hC
Q 028131 104 LVEDKIAFAFRLY--DLRQTGFIEREELKEMVLALLHESDLILSDDVIETIVDKSFSDADTNGDGKIDPEEWKEFVK-KN 180 (213)
Q Consensus 104 ~~~~~~~~~F~~~--D~d~~G~I~~~El~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~d~dg~Is~~ef~~~l~-~~ 180 (213)
..++++..+...+ |.|....+--+||..... +++++.-...++-+-+.+-.--+|.+=|.|..+-+. .+
T Consensus 32 ~~~~e~~A~l~E~r~DyNr~HF~R~~ef~~~~~--------~l~~e~r~~FidFLerScTaEFSGflLYKEl~rrlk~~~ 103 (337)
T TIGR02029 32 PVENEWDAMLAEMKADYNRHHFVRNEEFDQSWE--------HIDGELRQAFIEFLERSCTSEFSGFLLYKELSRRLKNRD 103 (337)
T ss_pred hhHHHHHHHHHHHHhCccccccccChhhhcchh--------hCCHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhcCCCC
Confidence 3445566666555 556666677777766442 245554444444444555555678888888888886 45
Q ss_pred hhhHhhcCchhhhhhh
Q 028131 181 PSLIKNMTLPYLKDIT 196 (213)
Q Consensus 181 ~~~~~~~~~~~~~~~~ 196 (213)
|.+.+.+++...++.|
T Consensus 104 P~lae~F~~MaRDEAR 119 (337)
T TIGR02029 104 PVVAELFQLMARDEAR 119 (337)
T ss_pred hHHHHHHHHHhhhhHH
Confidence 6677766655544443
No 194
>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]
Probab=33.84 E-value=1.7e+02 Score=25.99 Aligned_cols=73 Identities=15% Similarity=0.151 Sum_probs=54.6
Q ss_pred HHHHHHhcCCCCCCcccHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHhh----CCCCCCCcCHHHHHHHHHhChhhH
Q 028131 109 IAFAFRLYDLRQTGFIEREELKEMVLALLHESDLILSDDVIETIVDKSFSDA----DTNGDGKIDPEEWKEFVKKNPSLI 184 (213)
Q Consensus 109 ~~~~F~~~D~d~~G~I~~~El~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~----d~d~dg~Is~~ef~~~l~~~~~~~ 184 (213)
-..+|..|-...++.++..-|..+|++. |..-++.-+..++..+=..- .....+.++.+.|.+++..+..++
T Consensus 88 eDLLFyLiaegq~ekipihKFiTALkst----GLrtsDPRLk~mMd~mKd~dq~~~e~S~gw~LdKDlFKkcI~sSI~lv 163 (622)
T KOG0506|consen 88 EDLLFYLIAEGQSEKIPIHKFITALKST----GLRTSDPRLKDMMDEMKDVDQEENESSSGWLLDKDLFKKCIFSSIVLV 163 (622)
T ss_pred hhhhhHHhhcCCcCcccHHHHHHHHHHc----CCCcCCchHHHHHHHHHHHHhhhcccccceeecHHHHHHhhccchhHH
Confidence 4567888877778999999999999998 99999888887775543221 123345799999999997765554
Q ss_pred h
Q 028131 185 K 185 (213)
Q Consensus 185 ~ 185 (213)
.
T Consensus 164 S 164 (622)
T KOG0506|consen 164 S 164 (622)
T ss_pred H
Confidence 4
No 195
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=33.56 E-value=24 Score=24.07 Aligned_cols=57 Identities=30% Similarity=0.425 Sum_probs=31.5
Q ss_pred cccHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhCCCCCCCcCHHHHHHHHHhChhhHh
Q 028131 123 FIEREELKEMVLALLHESDLILSDDVIETIVDKSFSDADTNGDGKIDPEEWKEFVKKNPSLIK 185 (213)
Q Consensus 123 ~I~~~El~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~d~dg~Is~~ef~~~l~~~~~~~~ 185 (213)
.++.+||..++..+ |..+.. .+. --...|...+......++-++++.++..+|.++.
T Consensus 32 p~s~~el~~~l~~~----~~~~~~-lin-~~~~~~k~l~~~~~~~~s~~e~i~~l~~~p~Lik 88 (110)
T PF03960_consen 32 PLSREELRELLSKL----GNGPDD-LIN-TRSKTYKELGKLKKDDLSDEELIELLLENPKLIK 88 (110)
T ss_dssp ---HHHHHHHHHHH----TSSGGG-GB--TTSHHHHHTTHHHCTTSBHHHHHHHHHHSGGGB-
T ss_pred CCCHHHHHHHHHHh----cccHHH-Hhc-CccchHhhhhhhhhhhhhhHHHHHHHHhChhhee
Confidence 47888888888777 422110 000 0012223433122357889999999999998876
No 196
>PLN02228 Phosphoinositide phospholipase C
Probab=33.42 E-value=2.3e+02 Score=25.80 Aligned_cols=12 Identities=17% Similarity=0.210 Sum_probs=6.7
Q ss_pred CCcCHHHHHHHH
Q 028131 50 GIIHKEEFQLAL 61 (213)
Q Consensus 50 G~l~~~e~~~~l 61 (213)
+.++.++|...|
T Consensus 37 ~~~t~~~~~~FL 48 (567)
T PLN02228 37 GKMSFDELLRFV 48 (567)
T ss_pred CccCHHHHHHHH
Confidence 356666655555
No 197
>PF09682 Holin_LLH: Phage holin protein (Holin_LLH); InterPro: IPR010026 This entry represents the Bacteriophage LL-H, Orf107, holin protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This protein family represent one of a large number of mutually dissimilar families of phage holins. It is thought that the temporal precision of holin-mediated lysis may occur through the build-up of a holin oligomer which causes the lysis [].
Probab=32.91 E-value=1.6e+02 Score=20.05 Aligned_cols=52 Identities=13% Similarity=0.188 Sum_probs=39.2
Q ss_pred HHHHHHhcCCCCCCcccHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHhh
Q 028131 109 IAFAFRLYDLRQTGFIEREELKEMVLALLHESDLILSDDVIETIVDKSFSDA 160 (213)
Q Consensus 109 ~~~~F~~~D~d~~G~I~~~El~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~ 160 (213)
...+-+.....++|.--.++-...+...+...|.++++++++.+++.....+
T Consensus 53 v~aveq~~~~~~~G~~K~~~A~~~v~~~L~~~gi~~t~~~i~~~IEaAV~~m 104 (108)
T PF09682_consen 53 VNAVEQVAKEGGKGEEKKAEAVQYVKERLKKKGIKVTDEQIEGAIEAAVKEM 104 (108)
T ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHH
Confidence 4455566666668888888777777776677799999999999998776655
No 198
>TIGR01639 P_fal_TIGR01639 Plasmodium falciparum uncharacterized domain TIGR01639. This model represents a conserved sequence region of about 60 amino acids found in over 40 predicted proteins of Plasmodium falciparum. It is not found elsewhere, including closely related species such as Plasmodium yoelii. No member of this family is characterized.
Probab=32.84 E-value=1.2e+02 Score=18.42 Aligned_cols=32 Identities=25% Similarity=0.330 Sum_probs=23.5
Q ss_pred CcccHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHH
Q 028131 122 GFIEREELKEMVLALLHESDLILSDDVIETIVDKSF 157 (213)
Q Consensus 122 G~I~~~El~~~l~~~~~~~~~~~~~~~~~~~~~~~f 157 (213)
-.+|.+||..++..+ +..++..+.-.++.++.
T Consensus 8 ~~lTeEEl~~~i~~L----~~~~~~~dm~~IW~~v~ 39 (61)
T TIGR01639 8 KKLSKEELNELINSL----DEIPNRNDMLIIWNQVH 39 (61)
T ss_pred HHccHHHHHHHHHhh----cCCCCHHHHHHHHHHHH
Confidence 357888888888887 88888777777775443
No 199
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=32.11 E-value=1.3e+02 Score=18.65 Aligned_cols=30 Identities=13% Similarity=0.255 Sum_probs=25.3
Q ss_pred CCcccHHHHHHHHHHHhhhcCCCCCHHHHHHHHH
Q 028131 121 TGFIEREELKEMVLALLHESDLILSDDVIETIVD 154 (213)
Q Consensus 121 ~G~I~~~El~~~l~~~~~~~~~~~~~~~~~~~~~ 154 (213)
+--|+.+-++.++..+ |..+|+..+..+.+
T Consensus 29 NPpine~mir~M~~QM----G~kpSekqi~Q~m~ 58 (64)
T PF03672_consen 29 NPPINEKMIRAMMMQM----GRKPSEKQIKQMMR 58 (64)
T ss_pred CCCCCHHHHHHHHHHh----CCCccHHHHHHHHH
Confidence 4578999999999988 99999998877764
No 200
>COG3956 Protein containing tetrapyrrole methyltransferase domain and MazG-like (predicted pyrophosphatase) domain [General function prediction only]
Probab=31.77 E-value=3.2e+02 Score=23.20 Aligned_cols=35 Identities=11% Similarity=0.331 Sum_probs=24.9
Q ss_pred CCCCCCcCHHHHHH-----HHHhChhhHhhcCchhhhhhh
Q 028131 162 TNGDGKIDPEEWKE-----FVKKNPSLIKNMTLPYLKDIT 196 (213)
Q Consensus 162 ~d~dg~Is~~ef~~-----~l~~~~~~~~~~~~~~~~~~~ 196 (213)
...+|.++.++-+. |++++|.++..-+....+|..
T Consensus 302 GkdeGyf~I~dVI~~i~~KMIrRHPHvF~d~qve~~~dv~ 341 (488)
T COG3956 302 GKDEGYFNINDVISGISEKMIRRHPHVFKDEQVEDSTDVL 341 (488)
T ss_pred cccCCeeeHHHHHHHHHHHHHHhCcccccccccccHHHHH
Confidence 34578888888765 557789988877776666554
No 201
>cd08330 CARD_ASC_NALP1 Caspase activation and recruitment domain found in Human ASC, NALP1, and similar proteins. Caspase activation and recruitment domain (CARD) similar to those found in human ASC (Apoptosis-associated speck-like protein containing a CARD) and NALP1 (CARD7, NLRP1). ASC, an adaptor molecule, and NALP1, a member of the Nod-like receptor (NLR) family, are involved in the assembly of the 'inflammasome', a multiprotein platform, which is responsible for caspase-1 activation and regulation of IL-1beta maturation. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effector Domain). They se
Probab=31.56 E-value=1.5e+02 Score=19.15 Aligned_cols=53 Identities=13% Similarity=0.209 Sum_probs=37.7
Q ss_pred CCCcccHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhCCCCCCCcCHHHHHHHHH-hChhhHh
Q 028131 120 QTGFIEREELKEMVLALLHESDLILSDDVIETIVDKSFSDADTNGDGKIDPEEWKEFVK-KNPSLIK 185 (213)
Q Consensus 120 ~~G~I~~~El~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~d~dg~Is~~ef~~~l~-~~~~~~~ 185 (213)
+.|.|+.++...+- ....+.+....++ ... ..-|...+.-|..++. ..|.+..
T Consensus 26 ~~~Vit~e~~~~I~-------a~~T~~~kar~Ll----d~l--~~kG~~A~~~F~~~L~e~~p~L~~ 79 (82)
T cd08330 26 GKKVITQEQYSEVR-------AEKTNQEKMRKLF----SFV--RSWGASCKDIFYQILREEEPYLVE 79 (82)
T ss_pred HCCCCCHHHHHHHH-------cCCCcHHHHHHHH----HHH--HccCHHHHHHHHHHHHHhChHHHh
Confidence 56889999888876 4455566666665 444 3358889999999998 5676654
No 202
>PF02337 Gag_p10: Retroviral GAG p10 protein; InterPro: IPR003322 Retroviral matrix proteins (or major core proteins) are components of envelope-associated capsids, which line the inner surface of virus envelopes and are associated with viral membranes []. Matrix proteins are produced as part of Gag precursor polyproteins. During viral maturation, the Gag polyprotein is cleaved into major structural proteins by the viral protease, yielding the matrix (MA), capsid (CA), nucleocapsid (NC), and some smaller peptides. Gag-derived proteins govern the entire assembly and release of the virus particles, with matrix proteins playing key roles in Gag stability, capsid assembly, transport and budding. Although matrix proteins from different retroviruses appear to perform similar functions and can have similar structural folds, their primary sequences can be very different. This entry represents matrix proteins from beta-retroviruses such as Mason-Pfizer monkey virus (MPMV) (Simian Mason-Pfizer virus) and Mouse mammary tumor virus (MMTV) [, ]. This entry also identifies matrix proteins from several eukaryotic endogenous retroviruses, which arise when one or more copies of the retroviral genome becomes integrated into the host genome [].; GO: 0005198 structural molecule activity, 0019028 viral capsid; PDB: 2F77_X 2F76_X.
Probab=31.54 E-value=1.6e+02 Score=19.58 Aligned_cols=53 Identities=13% Similarity=0.247 Sum_probs=30.2
Q ss_pred HHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhC-CCCCCCcCHHHHHHHHHh
Q 028131 127 EELKEMVLALLHESDLILSDDVIETIVDKSFSDAD-TNGDGKIDPEEWKEFVKK 179 (213)
Q Consensus 127 ~El~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d-~d~dg~Is~~ef~~~l~~ 179 (213)
+-|..+|+.++...|..++.+++..++..+...+- ...+|.|+.+.|.+.-..
T Consensus 8 ~~fv~~Lk~lLk~rGi~v~~~~L~~f~~~i~~~~PWF~~eG~l~~~~W~kvG~~ 61 (90)
T PF02337_consen 8 QPFVSILKHLLKERGIRVKKKDLINFLSFIDKVCPWFPEEGTLDLDNWKKVGEE 61 (90)
T ss_dssp HHHHHHHHHHHHCCT----HHHHHHHHHHHHHHTT-SS--SS-HHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCeeecHHHHHHHHHHHHHhCCCCCCCCCcCHHHHHHHHHH
Confidence 44666666666667888888877777765554432 355677888888776654
No 203
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=31.33 E-value=1.1e+02 Score=21.09 Aligned_cols=20 Identities=30% Similarity=0.448 Sum_probs=17.5
Q ss_pred CCcCHHHHHHHHHhChhhHh
Q 028131 166 GKIDPEEWKEFVKKNPSLIK 185 (213)
Q Consensus 166 g~Is~~ef~~~l~~~~~~~~ 185 (213)
..++-++++.++..+|.+++
T Consensus 70 ~~ls~~e~~~ll~~~P~Lik 89 (113)
T cd03033 70 EALDEEEALALMIADPLLIR 89 (113)
T ss_pred cCCCHHHHHHHHHhCcceee
Confidence 46789999999999998877
No 204
>PF13720 Acetyltransf_11: Udp N-acetylglucosamine O-acyltransferase; Domain 2; PDB: 3I3A_A 3I3X_A 3HSQ_B 2JF2_A 1LXA_A 2AQ9_A 2QIV_X 2QIA_A 2JF3_A 4EQY_F ....
Probab=31.22 E-value=1.5e+02 Score=19.17 Aligned_cols=52 Identities=21% Similarity=0.211 Sum_probs=31.3
Q ss_pred hcCCCCHHHHHHHHHHHHHhhcCCCCCCCcCHHHHHHHHhcccCcchHHHHHHHHHhc
Q 028131 23 AETPFTVCEVEALYELFKKLSSSIFDDGIIHKEEFQLALFRNKNKKNLFADRIFDLFD 80 (213)
Q Consensus 23 ~~~~ls~~~i~~l~~~F~~~d~~~~~~G~l~~~e~~~~l~~~~~~~~~~~~~~~~~~d 80 (213)
+...++.+++..+.+.|..+- .++ .+.++-...+.... ...+.+..+...+.
T Consensus 24 rR~Gfs~~~i~~l~~ayr~l~----~~~-~~~~~a~~~l~~~~-~~~~~v~~~~~Fi~ 75 (83)
T PF13720_consen 24 RRRGFSKEEISALRRAYRILF----RSG-LTLEEALEELEEEY-PDSPEVREIVDFIR 75 (83)
T ss_dssp HHTTS-HHHHHHHHHHHHHHH----TSS-S-HHHHHHHHHHHT-TSCHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHHHHHHH----hCC-CCHHHHHHHHHHhc-cCCHHHHHHHHHHH
Confidence 456799999999999999986 333 56666555553321 22444455555443
No 205
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=30.64 E-value=4.7e+02 Score=25.23 Aligned_cols=150 Identities=10% Similarity=0.077 Sum_probs=77.9
Q ss_pred CCCHHHHHHH-HHHHHHhhcCCCCCCCcCHHHHHHHHhcccC--cchHHHHHHHHHhcCCCCCcccHHHHHHHHhhhCCC
Q 028131 26 PFTVCEVEAL-YELFKKLSSSIFDDGIIHKEEFQLALFRNKN--KKNLFADRIFDLFDLKRNGVIEFGEFVRSLGVFHPH 102 (213)
Q Consensus 26 ~ls~~~i~~l-~~~F~~~d~~~~~~G~l~~~e~~~~l~~~~~--~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~ 102 (213)
..++.+|.++ +..+-..|.+ ....++..++..+|..... ....+..+-|.... -..+.++|.+|..+...+.-.
T Consensus 136 a~~p~qI~~wlrk~~ysvd~~--~~~~isard~k~~l~qvn~k~~~~kfl~e~~ted~-~~k~dlsf~~f~~ly~~lmfs 212 (1267)
T KOG1264|consen 136 APTPLQIERWLRKQIYSVDQT--RENSISARDLKTILPQVNFKVSSAKFLKEKFTEDG-ARKDDLSFEQFHLLYKKLMFS 212 (1267)
T ss_pred CCChHHHHHHHHhhheeccch--hhhheeHHhhhcccccceEEechHHHHHHHHhHhh-hccccccHHHHHHHHHHHhhc
Confidence 4556677655 4566677765 6667999999877744332 22223323233222 235679999999887655422
Q ss_pred CChHHHHH--H--HHHhcCCCCCCcccHHHHHHHHHHHhhhcCCCCCHH---HHHHHHHHHHHhh-CCCCCCCcCHHHHH
Q 028131 103 ALVEDKIA--F--AFRLYDLRQTGFIEREELKEMVLALLHESDLILSDD---VIETIVDKSFSDA-DTNGDGKIDPEEWK 174 (213)
Q Consensus 103 ~~~~~~~~--~--~F~~~D~d~~G~I~~~El~~~l~~~~~~~~~~~~~~---~~~~~~~~~f~~~-d~d~dg~Is~~ef~ 174 (213)
......+. . +...-+...-..|.+.||+++|..- .....-. .++.++....+.. -.-..-.++..||+
T Consensus 213 ~~~a~l~e~~~~~~~~~~~~~d~~vV~~~ef~rFL~~~----Q~e~~Asdr~av~~~~r~F~~D~~re~~EPyl~v~EFv 288 (1267)
T KOG1264|consen 213 QQKAILLEFKKDFILGNTDRPDASVVYLQEFQRFLIHE----QQEHWASDRNAVREFMRKFIDDTMRETAEPYLFVDEFV 288 (1267)
T ss_pred cchhhhhcccchhhhcCCCCccceEeeHHHHHHHHHhh----hHHHhhhHHHHHHHHHHHHHhhhhhhccCcceeHHHHH
Confidence 21111111 1 1111222233679999999998532 1111111 2222222111111 11123368899999
Q ss_pred HHHHhChh
Q 028131 175 EFVKKNPS 182 (213)
Q Consensus 175 ~~l~~~~~ 182 (213)
.++-...+
T Consensus 289 ~fLFSreN 296 (1267)
T KOG1264|consen 289 TFLFSREN 296 (1267)
T ss_pred HHHhhccc
Confidence 99865443
No 206
>KOG0493 consensus Transcription factor Engrailed, contains HOX domain [General function prediction only]
Probab=30.32 E-value=1.2e+02 Score=24.39 Aligned_cols=48 Identities=17% Similarity=0.216 Sum_probs=30.5
Q ss_pred hhcCCCCHHHHHHHHHHHHHhhcCCCCCCCcCHHHHHHHHhcccCcchHHHHHHHH
Q 028131 22 AAETPFTVCEVEALYELFKKLSSSIFDDGIIHKEEFQLALFRNKNKKNLFADRIFD 77 (213)
Q Consensus 22 ~~~~~ls~~~i~~l~~~F~~~d~~~~~~G~l~~~e~~~~l~~~~~~~~~~~~~~~~ 77 (213)
+..+.||.+++.+|+.-|+ .+-||+..--. -|.......+..++..|.
T Consensus 248 RPRTAFtaeQL~RLK~EF~-------enRYlTEqRRQ-~La~ELgLNEsQIKIWFQ 295 (342)
T KOG0493|consen 248 RPRTAFTAEQLQRLKAEFQ-------ENRYLTEQRRQ-ELAQELGLNESQIKIWFQ 295 (342)
T ss_pred CccccccHHHHHHHHHHHh-------hhhhHHHHHHH-HHHHHhCcCHHHhhHHhh
Confidence 5678899999999999987 66788766533 332222334444444443
No 207
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=30.01 E-value=1.3e+02 Score=20.41 Aligned_cols=58 Identities=22% Similarity=0.186 Sum_probs=33.9
Q ss_pred CcccHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhCCCCC-CCcCHHHHHHHHHhChhhHh
Q 028131 122 GFIEREELKEMVLALLHESDLILSDDVIETIVDKSFSDADTNGD-GKIDPEEWKEFVKKNPSLIK 185 (213)
Q Consensus 122 G~I~~~El~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~d~d-g~Is~~ef~~~l~~~~~~~~ 185 (213)
...+.+|+..++... +.. ...+-.--...|.....+.. ..++-++++.+|..+|.+++
T Consensus 34 ~~~~~~el~~~~~~~----~~~--~~~l~~~~~~~~~~l~~~~~~~~~s~~e~~~~l~~~p~Lik 92 (111)
T cd03036 34 EPPSKEELKKWLEKS----GLP--LKKFFNTSGKSYRELGLKDKLPSLSEEEALELLSSDGMLIK 92 (111)
T ss_pred CcccHHHHHHHHHHc----CCC--HHHHHhcCCchHHhCCcccccccCCHHHHHHHHHhCcCeee
Confidence 356777888877665 322 11111111233445444322 24688999999999998876
No 208
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=29.50 E-value=1.3e+02 Score=21.15 Aligned_cols=20 Identities=25% Similarity=0.390 Sum_probs=17.4
Q ss_pred CCcCHHHHHHHHHhChhhHh
Q 028131 166 GKIDPEEWKEFVKKNPSLIK 185 (213)
Q Consensus 166 g~Is~~ef~~~l~~~~~~~~ 185 (213)
..++-++.+.+|..+|.+++
T Consensus 71 ~~ls~~e~i~lm~~~P~LIK 90 (126)
T TIGR01616 71 DSIDEASALALMVSDPLLIR 90 (126)
T ss_pred ccCCHHHHHHHHHhCcCeEe
Confidence 46788999999999998877
No 209
>PRK00523 hypothetical protein; Provisional
Probab=29.26 E-value=1.5e+02 Score=18.78 Aligned_cols=31 Identities=13% Similarity=0.212 Sum_probs=25.4
Q ss_pred CCcccHHHHHHHHHHHhhhcCCCCCHHHHHHHHHH
Q 028131 121 TGFIEREELKEMVLALLHESDLILSDDVIETIVDK 155 (213)
Q Consensus 121 ~G~I~~~El~~~l~~~~~~~~~~~~~~~~~~~~~~ 155 (213)
+--|+.+-++.++..+ |..+|+..+..+.++
T Consensus 37 NPpine~mir~M~~QM----GqKPSekki~Q~m~~ 67 (72)
T PRK00523 37 NPPITENMIRAMYMQM----GRKPSESQIKQVMRS 67 (72)
T ss_pred CcCCCHHHHHHHHHHh----CCCccHHHHHHHHHH
Confidence 4678888899999888 999999888777643
No 210
>PLN00138 large subunit ribosomal protein LP2; Provisional
Probab=29.06 E-value=1.9e+02 Score=20.07 Aligned_cols=39 Identities=26% Similarity=0.268 Sum_probs=29.3
Q ss_pred HHHHhcCCCCCCcccHHHHHHHHHHHhhhcCCCCCHHHHHHHH
Q 028131 111 FAFRLYDLRQTGFIEREELKEMVLALLHESDLILSDDVIETIV 153 (213)
Q Consensus 111 ~~F~~~D~d~~G~I~~~El~~~l~~~~~~~~~~~~~~~~~~~~ 153 (213)
.+|-+.-..|+..++.+++..+|.+. |..+.+..+..++
T Consensus 5 aAyll~~l~g~~~pta~dI~~IL~Aa----Gvevd~~~~~~f~ 43 (113)
T PLN00138 5 AAYLLAVLGGNTCPSAEDLKDILGSV----GADADDDRIELLL 43 (113)
T ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHc----CCcccHHHHHHHH
Confidence 34444444566779999999999988 8888887776666
No 211
>KOG3442 consensus Uncharacterized conserved protein [Function unknown]
Probab=27.93 E-value=1.3e+02 Score=21.29 Aligned_cols=43 Identities=21% Similarity=0.278 Sum_probs=34.0
Q ss_pred CCCcccHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhCCCCCCC
Q 028131 120 QTGFIEREELKEMVLALLHESDLILSDDVIETIVDKSFSDADTNGDGK 167 (213)
Q Consensus 120 ~~G~I~~~El~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~d~dg~ 167 (213)
..|.|+.+|=+++|.- ...++.++++.-.+.+|..-|....|.
T Consensus 52 ~~~~iTlqEa~qILnV-----~~~ln~eei~k~yehLFevNdkskGGS 94 (132)
T KOG3442|consen 52 SNGKITLQEAQQILNV-----KEPLNREEIEKRYEHLFEVNDKSKGGS 94 (132)
T ss_pred ccccccHHHHhhHhCC-----CCCCCHHHHHHHHHHHHhccCcccCcc
Confidence 3466999999998842 457888999999999998888776664
No 212
>PF03556 Cullin_binding: Cullin binding; InterPro: IPR005176 The eukaryotic defective in cullin neddylation (DCN) protein family, may contribute to neddylation of cullin components of SCF-type E3 ubiquitin ligase complexes. These multi-protein complexes are required for polyubiquitination and subsequent degradation of target proteins by the 26S proteasome []. Proteins in the DCN family include: Yeast DCN1. Vertebrate DCN1-like protein 1. Vertebrate DCN1-like protein 2. Vertebrate DCN1-like protein 4. This entry represents a domain found within DCN family proteins. Its function is unknown but it has been suggested that it has the features of a basic helix-loop-helix leucine zipper (bHLH-ZIP) domain [].It is often found in association with a UBA-like domain (IPR009060 from INTERPRO).; PDB: 3TDI_A 2IS9_A 3O6B_E 3O2P_A 3BQ3_A 3TDZ_A 3TDU_B.
Probab=27.87 E-value=2.1e+02 Score=19.86 Aligned_cols=61 Identities=5% Similarity=0.055 Sum_probs=32.0
Q ss_pred HHHHhcCCCCCcccHHHHHHHHhhhCCCCChHHHHHHHHHhcCCCCCCcccHHHHHHHHHHH
Q 028131 75 IFDLFDLKRNGVIEFGEFVRSLGVFHPHALVEDKIAFAFRLYDLRQTGFIEREELKEMVLAL 136 (213)
Q Consensus 75 ~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~F~~~D~d~~G~I~~~El~~~l~~~ 136 (213)
.|...-..+...++.+.-+.++..+.+.. ....+..-++.+...+...|+.+-...++.-+
T Consensus 29 ~F~~~~~~~qr~l~~e~Ai~~W~llf~~~-~~~~l~~w~~Fl~~~~~k~IskD~W~~~l~F~ 89 (117)
T PF03556_consen 29 TFDFAREEGQRSLPLETAIAYWRLLFSGR-FFPLLDSWIEFLEEKYKKAISKDTWNQFLDFF 89 (117)
T ss_dssp HHHHHS-TT-SSEEHHHHHHHHHHHTTTT-SSCCHHHHHHHHHHCT-SEEEHHHHHHHHHHH
T ss_pred HHHHhCCcccCCCCHHHHHHHHHHHcCCC-CcHHHHHHHHHHHHcCCcCcChhHHHHHHHHH
Confidence 34444444455677777777776666322 11223333333333466678888888877644
No 213
>PF09373 PMBR: Pseudomurein-binding repeat; InterPro: IPR018975 Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) is a methanogenic Gram-positive microorganism with a cell wall consisting of pseudomurein. This repeat specifically binds to pseudomurein. This repeat is found at the N terminus of PeiW and PeiP which are pseudomurein binding phage proteins.
Probab=27.23 E-value=67 Score=16.75 Aligned_cols=21 Identities=19% Similarity=0.442 Sum_probs=16.3
Q ss_pred CCCcCHHHHHHHHHhChhhHh
Q 028131 165 DGKIDPEEWKEFVKKNPSLIK 185 (213)
Q Consensus 165 dg~Is~~ef~~~l~~~~~~~~ 185 (213)
.|.|++++++.+..+-..+..
T Consensus 2 ~~~i~~~~~~d~a~rv~~f~~ 22 (33)
T PF09373_consen 2 SGTISKEEYLDMASRVNNFYE 22 (33)
T ss_pred CceecHHHHHHHHHHHHHHHH
Confidence 588999999999987655444
No 214
>PF02761 Cbl_N2: CBL proto-oncogene N-terminus, EF hand-like domain; InterPro: IPR014741 Cbl (Casitas B-lineage lymphoma) is an adaptor protein that functions as a negative regulator of many signalling pathways that start from receptors at the cell surface. The N-terminal region of Cbl contains a Cbl-type phosphotyrosine-binding (Cbl-PTB) domain, which is composed of three evolutionarily conserved domains: an N-terminal four-helix bundle (4H) domain, an EF hand-like calcium-binding domain, and a divergent SH2-like domain. The calcium-bound EF-hand wedges between the 4H and SH2 domains, and roughly determines their relative orientation. The Cbl-PTB domain has also been named Cbl N-terminal (Cbl-N) or tyrosine kinase binding (TKB) domain [, ]. The N-terminal 4H domain contains four long alpha-helices. The C and D helices in this domain pack against the adjacent EF-hand-like domain, and a highly conserved loop connecting the A and B helices contacts the SH2-like domain. The EF-hand motif is similar to classical EF-hand proteins. The SH2-like domain retains the general helix-sheet-helix architecture of the SH2 fold, but lacks the secondary beta-sheet, comprising beta-strands D', E and F, and also a prominent BG loop []. This entry represents the EF hand-like domain.; GO: 0005509 calcium ion binding; PDB: 3OP0_A 3PFV_A 3VGO_A 3PLF_B 2Y1M_A 2CBL_A 3BUX_B 3BUN_B 3BUM_B 3OB1_B ....
Probab=26.51 E-value=1.9e+02 Score=18.97 Aligned_cols=48 Identities=19% Similarity=0.237 Sum_probs=24.6
Q ss_pred cccHHHHHHHHhhhCCCCChHHHHHHHHHhcCCCCCCcccHHHHHHHHH
Q 028131 86 VIEFGEFVRSLGVFHPHALVEDKIAFAFRLYDLRQTGFIEREELKEMVL 134 (213)
Q Consensus 86 ~i~~~ef~~~~~~~~~~~~~~~~~~~~F~~~D~d~~G~I~~~El~~~l~ 134 (213)
.|.+.+|...+..... .....+....=..+|--++|+|+.=||--+.+
T Consensus 22 IVPW~~F~~~L~~~h~-~~~~~~~~aLk~TiDlT~n~~iS~FeFdvFtR 69 (85)
T PF02761_consen 22 IVPWSEFRQALQKVHP-ISSGLEAMALKSTIDLTCNDYISNFEFDVFTR 69 (85)
T ss_dssp EEEHHHHHHHHHHHS---SSHHHHHHHHHHH-TTSSSEEEHHHHHHHHH
T ss_pred EeeHHHHHHHHHHhcC-CCchHHHHHHHHHHhcccCCccchhhhHHHHH
Confidence 4666666666655442 22333334444455666666666666655544
No 215
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=26.25 E-value=1.3e+02 Score=17.04 Aligned_cols=31 Identities=29% Similarity=0.536 Sum_probs=21.3
Q ss_pred CCCcccHHHHHHHHHHHhhhcCCCCCHHHHHHHH
Q 028131 120 QTGFIEREELKEMVLALLHESDLILSDDVIETIV 153 (213)
Q Consensus 120 ~~G~I~~~El~~~l~~~~~~~~~~~~~~~~~~~~ 153 (213)
..|.|+ +++.++..+ ...|..+++..++.++
T Consensus 14 ~~GlI~--~~~~~l~~l-~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 14 RRGLIS--EVKPLLDRL-QQAGFRISPKLIEEIL 44 (48)
T ss_pred HcCChh--hHHHHHHHH-HHcCcccCHHHHHHHH
Confidence 346776 666666655 4458888888877766
No 216
>PRK14981 DNA-directed RNA polymerase subunit F; Provisional
Probab=26.05 E-value=1.8e+02 Score=20.10 Aligned_cols=25 Identities=28% Similarity=0.497 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHhhhcCCCCCHHHHHHHHH
Q 028131 126 REELKEMVLALLHESDLILSDDVIETIVD 154 (213)
Q Consensus 126 ~~El~~~l~~~~~~~~~~~~~~~~~~~~~ 154 (213)
.+|++.++... ...+++++++.+++
T Consensus 81 ~dElrai~~~~----~~~~~~e~l~~ILd 105 (112)
T PRK14981 81 RDELRAIFAKE----RYTLSPEELDEILD 105 (112)
T ss_pred HHHHHHHHHHh----ccCCCHHHHHHHHH
Confidence 45555555554 55566666666553
No 217
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.95 E-value=1.8e+02 Score=18.35 Aligned_cols=31 Identities=16% Similarity=0.217 Sum_probs=25.4
Q ss_pred CCcccHHHHHHHHHHHhhhcCCCCCHHHHHHHHHH
Q 028131 121 TGFIEREELKEMVLALLHESDLILSDDVIETIVDK 155 (213)
Q Consensus 121 ~G~I~~~El~~~l~~~~~~~~~~~~~~~~~~~~~~ 155 (213)
+-.|+.+-++.++..+ |..+|+..+..+.+.
T Consensus 36 NPpine~~iR~M~~qm----GqKpSe~kI~Qvm~~ 66 (71)
T COG3763 36 NPPINEEMIRMMMAQM----GQKPSEKKINQVMRS 66 (71)
T ss_pred CCCCCHHHHHHHHHHh----CCCchHHHHHHHHHH
Confidence 4678899999999888 999999888777643
No 218
>cd04411 Ribosomal_P1_P2_L12p Ribosomal protein P1, P2, and L12p. Ribosomal proteins P1 and P2 are the eukaryotic proteins that are functionally equivalent to bacterial L7/L12. L12p is the archaeal homolog. Unlike other ribosomal proteins, the archaeal L12p and eukaryotic P1 and P2 do not share sequence similarity with their bacterial counterparts. They are part of the ribosomal stalk (called the L7/L12 stalk in bacteria), along with 28S rRNA and the proteins L11 and P0 in eukaryotes (23S rRNA, L11, and L10e in archaea). In bacterial ribosomes, L7/L12 homodimers bind the extended C-terminal helix of L10 to anchor the L7/L12 molecules to the ribosome. Eukaryotic P1/P2 heterodimers and archaeal L12p homodimers are believed to bind the L10 equivalent proteins, eukaryotic P0 and archaeal L10e, in a similar fashion. P1 and P2 (L12p, L7/L12) are the only proteins in the ribosome to occur as multimers, always appearing as sets of dimers. Recent data indicate that most archaeal species contain
Probab=23.95 E-value=2.4e+02 Score=19.23 Aligned_cols=43 Identities=14% Similarity=0.190 Sum_probs=32.0
Q ss_pred ccHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhCCCCCCCcCHHHHHHHHHh
Q 028131 124 IEREELKEMVLALLHESDLILSDDVIETIVDKSFSDADTNGDGKIDPEEWKEFVKK 179 (213)
Q Consensus 124 I~~~El~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~d~dg~Is~~ef~~~l~~ 179 (213)
+|.+++..+|... |..+.+..+..++ ..+. ..+.++.+.-...
T Consensus 17 ~ta~~I~~IL~aa----GveVe~~~~~~~~----~aLa-----Gk~V~eli~~g~~ 59 (105)
T cd04411 17 LTEDKIKELLSAA----GAEIEPERVKLFL----SALN-----GKNIDEVISKGKE 59 (105)
T ss_pred CCHHHHHHHHHHc----CCCcCHHHHHHHH----HHHc-----CCCHHHHHHHHHh
Confidence 9999999999998 9999988887777 3432 2356666665543
No 219
>PF11116 DUF2624: Protein of unknown function (DUF2624); InterPro: IPR020277 This entry contains proteins with no known function.
Probab=23.85 E-value=2.2e+02 Score=18.70 Aligned_cols=69 Identities=12% Similarity=0.170 Sum_probs=44.2
Q ss_pred cccHHHHHHHHhhhCCCCChHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHhh
Q 028131 86 VIEFGEFVRSLGVFHPHALVEDKIAFAFRLYDLRQTGFIEREELKEMVLALLHESDLILSDDVIETIVDKSFSDA 160 (213)
Q Consensus 86 ~i~~~ef~~~~~~~~~~~~~~~~~~~~F~~~D~d~~G~I~~~El~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~ 160 (213)
.++..|++.+..... -...+..++.+...+-.+.-...+.++-..++..+ ....+++.+ .-++.+|..+
T Consensus 14 ~iT~~eLlkyskqy~-i~it~~QA~~I~~~lr~k~inIfn~~~r~~llkei----a~iT~p~ta-~~vn~Lf~qf 82 (85)
T PF11116_consen 14 NITAKELLKYSKQYN-ISITKKQAEQIANILRGKNINIFNEQERKKLLKEI----AKITSPQTA-KQVNELFEQF 82 (85)
T ss_pred cCCHHHHHHHHHHhC-CCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHH----HHhcCHHHH-HHHHHHHHHH
Confidence 477777777776554 45566777777777777777777777777777766 333444433 3345555543
No 220
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=23.67 E-value=1.5e+02 Score=25.56 Aligned_cols=22 Identities=27% Similarity=0.658 Sum_probs=11.0
Q ss_pred HHHHHHHhcCCCCCcccHHHHH
Q 028131 72 ADRIFDLFDLKRNGVIEFGEFV 93 (213)
Q Consensus 72 ~~~~~~~~d~~~~~~i~~~ef~ 93 (213)
+-++|...|.+.+|.++-+||.
T Consensus 479 lgkiwklad~d~dg~ld~eefa 500 (532)
T KOG1954|consen 479 LGKIWKLADIDKDGMLDDEEFA 500 (532)
T ss_pred HHhhhhhhcCCcccCcCHHHHH
Confidence 3445555555555555555543
No 221
>cd08332 CARD_CASP2 Caspase activation and recruitment domain of Caspase-2. Caspase activation and recruitment domain (CARD) similar to that found in caspase-2. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Caspase-2 (also known as ICH1, NEDD2, or CASP2) is one of the most evolutionarily conserved caspases, and plays a role in apoptosis, DNA damage response, cell cycle regulation, and tumor suppression. It is localized in the nucleus and exhibits properties of both an initiator and an effector caspase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and
Probab=23.67 E-value=2.2e+02 Score=18.66 Aligned_cols=54 Identities=9% Similarity=0.009 Sum_probs=35.6
Q ss_pred CCCcccHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhCCCCCCCcCHHHHHHHHHh--ChhhHhh
Q 028131 120 QTGFIEREELKEMVLALLHESDLILSDDVIETIVDKSFSDADTNGDGKIDPEEWKEFVKK--NPSLIKN 186 (213)
Q Consensus 120 ~~G~I~~~El~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~d~dg~Is~~ef~~~l~~--~~~~~~~ 186 (213)
+.|.++.++...+- ....+.+....++ ... ...|--.|..|+.++.. .+.+...
T Consensus 31 ~~gvlt~~~~~~I~-------~~~t~~~k~~~Ll----d~L--~~RG~~AF~~F~~aL~~~~~~~La~l 86 (90)
T cd08332 31 QKDILTDSMAESIM-------AKPTSFSQNVALL----NLL--PKRGPRAFSAFCEALRETSQEHLCDL 86 (90)
T ss_pred HcCCCCHHHHHHHH-------cCCCcHHHHHHHH----HHH--HHhChhHHHHHHHHHHhcChHHHHHH
Confidence 35889988877765 4445556665555 333 34577789999999985 3444443
No 222
>PLN02230 phosphoinositide phospholipase C 4
Probab=23.15 E-value=2.9e+02 Score=25.28 Aligned_cols=12 Identities=0% Similarity=0.099 Sum_probs=6.3
Q ss_pred CcccHHHHHHHH
Q 028131 122 GFIEREELKEMV 133 (213)
Q Consensus 122 G~I~~~El~~~l 133 (213)
+.++.+.|..+|
T Consensus 89 ~~~~~~~F~~yL 100 (598)
T PLN02230 89 RNLTLDDFNYYL 100 (598)
T ss_pred cccCHHHHHHHH
Confidence 345555555554
No 223
>PF00046 Homeobox: Homeobox domain not present here.; InterPro: IPR001356 The homeobox domain was first identified in a number of drosophila homeotic and segmentation proteins, but is now known to be well-conserved in many other animals, including vertebrates [, , ]. Hox genes encode homeodomain-containing transcriptional regulators that operate differential genetic programs along the anterior-posterior axis of animal bodies []. The domain binds DNA through a helix-turn-helix (HTH) structure. The HTH motif is characterised by two alpha-helices, which make intimate contacts with the DNA and are joined by a short turn. The second helix binds to DNA via a number of hydrogen bonds and hydrophobic interactions, which occur between specific side chains and the exposed bases and thymine methyl groups within the major groove of the DNA []. The first helix helps to stabilise the structure. The motif is very similar in sequence and structure in a wide range of DNA-binding proteins (e.g., cro and repressor proteins, homeotic proteins, etc.). One of the principal differences between HTH motifs in these different proteins arises from the stereo-chemical requirement for glycine in the turn which is needed to avoid steric interference of the beta-carbon with the main chain: for cro and repressor proteins the glycine appears to be mandatory, while for many of the homeotic and other DNA-binding proteins the requirement is relaxed.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2DA3_A 1LFB_A 2LFB_A 2ECB_A 2DA5_A 3D1N_O 3A03_A 2XSD_C 3CMY_A 1AHD_P ....
Probab=22.48 E-value=34 Score=19.93 Aligned_cols=28 Identities=29% Similarity=0.336 Sum_probs=21.3
Q ss_pred cCCCCCCchHhhhhcCCCCHHHHHHHHH
Q 028131 10 KQTPGYEEPTVLAAETPFTVCEVEALYE 37 (213)
Q Consensus 10 ~~~~~~~~~~~l~~~~~ls~~~i~~l~~ 37 (213)
.++|+.++...|+...+++..+|..++.
T Consensus 22 ~~~p~~~~~~~la~~l~l~~~~V~~WF~ 49 (57)
T PF00046_consen 22 NPYPSKEEREELAKELGLTERQVKNWFQ 49 (57)
T ss_dssp SSSCHHHHHHHHHHHHTSSHHHHHHHHH
T ss_pred hccccccccccccccccccccccccCHH
Confidence 3455667788888888888888887764
No 224
>PLN02222 phosphoinositide phospholipase C 2
Probab=22.36 E-value=3e+02 Score=25.12 Aligned_cols=67 Identities=13% Similarity=0.202 Sum_probs=35.6
Q ss_pred cCCCCHHHHHHHHHHHHHhhcCCCCCCCcCHHHHHHHHhcccC---cchHHHHHHHHHhcC-CCCCcccHHHHHHHHh
Q 028131 24 ETPFTVCEVEALYELFKKLSSSIFDDGIIHKEEFQLALFRNKN---KKNLFADRIFDLFDL-KRNGVIEFGEFVRSLG 97 (213)
Q Consensus 24 ~~~ls~~~i~~l~~~F~~~d~~~~~~G~l~~~e~~~~l~~~~~---~~~~~~~~~~~~~d~-~~~~~i~~~ef~~~~~ 97 (213)
.....+.++..++.. +. .++.++.++|...|..... .....+..++..+.. ...+.++++.|..++.
T Consensus 19 ~~~~~~~ei~~if~~---~~----~~~~mt~~~l~~FL~~~Q~~~~~~~~~~~~ii~~~~~~~~~~~~~~~gF~~yL~ 89 (581)
T PLN02222 19 TASEAPREIKTIFEK---YS----ENGVMTVDHLHRFLIDVQKQDKATREDAQSIINSASSLLHRNGLHLDAFFKYLF 89 (581)
T ss_pred ccCCCcHHHHHHHHH---hc----CCCCcCHHHHHHHHHHhcCCccCCHHHHHHHHHhhhhhhhccCcCHHHHHHHhc
Confidence 344455555444443 32 3457888888777744332 123344555655422 1234577777777764
No 225
>PRK12461 UDP-N-acetylglucosamine acyltransferase; Provisional
Probab=21.91 E-value=3.9e+02 Score=21.30 Aligned_cols=52 Identities=13% Similarity=0.198 Sum_probs=31.9
Q ss_pred hcCCCCHHHHHHHHHHHHHhhcCCCCCCCcCHHHHHHHHhcccCcchHHHHHHHHHhc
Q 028131 23 AETPFTVCEVEALYELFKKLSSSIFDDGIIHKEEFQLALFRNKNKKNLFADRIFDLFD 80 (213)
Q Consensus 23 ~~~~ls~~~i~~l~~~F~~~d~~~~~~G~l~~~e~~~~l~~~~~~~~~~~~~~~~~~d 80 (213)
+...++++++..+++.|+.+- .+| ++.++-...+... ....+.+..+...+.
T Consensus 196 ~r~g~~~~~~~~~~~~~~~~~----~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~f~~ 247 (255)
T PRK12461 196 RRRGFSSRAIRALKRAYKIIY----RSG-LSVQQAVAELELQ-QFESPEVEELIDFIK 247 (255)
T ss_pred hhcCCCHHHHHHHHHHHHHHH----hcC-CCHHHHHHHHHHh-ccCCHHHHHHHHHHH
Confidence 556799999999999999885 344 4555544444332 123344455555553
No 226
>PRK01844 hypothetical protein; Provisional
Probab=21.66 E-value=2.3e+02 Score=18.01 Aligned_cols=31 Identities=19% Similarity=0.235 Sum_probs=25.3
Q ss_pred CCcccHHHHHHHHHHHhhhcCCCCCHHHHHHHHHH
Q 028131 121 TGFIEREELKEMVLALLHESDLILSDDVIETIVDK 155 (213)
Q Consensus 121 ~G~I~~~El~~~l~~~~~~~~~~~~~~~~~~~~~~ 155 (213)
+--|+.+-++.++..+ |..+|+..+..+.++
T Consensus 36 NPpine~mir~Mm~QM----GqkPSekki~Q~m~~ 66 (72)
T PRK01844 36 NPPINEQMLKMMMMQM----GQKPSQKKINQMMSA 66 (72)
T ss_pred CCCCCHHHHHHHHHHh----CCCccHHHHHHHHHH
Confidence 3578888899999888 999999888777643
No 227
>COG4103 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.50 E-value=3.3e+02 Score=19.86 Aligned_cols=92 Identities=15% Similarity=0.129 Sum_probs=54.1
Q ss_pred HHHHHhhcCCCCCCCcCHHHHH---HHHhcccCcchHHHHHHHHHhcCCCCCcccHHHHHHHHhhhCCCCChHHHHHHHH
Q 028131 37 ELFKKLSSSIFDDGIIHKEEFQ---LALFRNKNKKNLFADRIFDLFDLKRNGVIEFGEFVRSLGVFHPHALVEDKIAFAF 113 (213)
Q Consensus 37 ~~F~~~d~~~~~~G~l~~~e~~---~~l~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~F 113 (213)
-+|.... -+|.++..|.. .++...-..+...+..+......-+...+++..|...+..........+.+..++
T Consensus 34 Llf~Vm~----ADG~v~~~E~~a~r~il~~~f~i~~~~l~ali~~~e~~~~Ea~d~y~fts~l~r~Ld~e~R~eli~~mw 109 (148)
T COG4103 34 LLFHVME----ADGTVSESEREAFRAILKENFGIDGEELDALIEAGEEAGYEAIDLYSFTSVLKRHLDEEQRLELIGLMW 109 (148)
T ss_pred HHHHHHh----cccCcCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 5677776 57888887754 3333333445555666666665555567899999888864332222233444444
Q ss_pred HhcCCCCCCcccHHHHHHHHH
Q 028131 114 RLYDLRQTGFIEREELKEMVL 134 (213)
Q Consensus 114 ~~~D~d~~G~I~~~El~~~l~ 134 (213)
.+- .-||.++.-|-.-+++
T Consensus 110 eIa--~ADg~l~e~Ed~vi~R 128 (148)
T COG4103 110 EIA--YADGELDESEDHVIWR 128 (148)
T ss_pred HHH--HccccccHHHHHHHHH
Confidence 444 3456777777554443
No 228
>PF05872 DUF853: Bacterial protein of unknown function (DUF853); InterPro: IPR008571 Members of this family have a P-loop containing nucleotide triphosphate hydrolases fold. This family is restricted to bacterial proteins, none of which have currently been characterised.
Probab=21.13 E-value=76 Score=27.95 Aligned_cols=51 Identities=16% Similarity=0.190 Sum_probs=35.3
Q ss_pred ccHHHHHHHH-hhhCC-CCChHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHh
Q 028131 87 IEFGEFVRSL-GVFHP-HALVEDKIAFAFRLYDLRQTGFIEREELKEMVLALL 137 (213)
Q Consensus 87 i~~~ef~~~~-~~~~~-~~~~~~~~~~~F~~~D~d~~G~I~~~El~~~l~~~~ 137 (213)
.+..||--++ +.+.. +...+..+..+|++.|.+|=-.|+..+|++++..+.
T Consensus 106 aTvsemGPlLLsrlL~LNdtQ~gvL~i~F~~ADd~gLlLlDLkDLra~l~~v~ 158 (502)
T PF05872_consen 106 ATVSEMGPLLLSRLLELNDTQEGVLNIVFRIADDEGLLLLDLKDLRAMLQYVS 158 (502)
T ss_pred eeHHhhchHHHHHHhccchHHHHHHHHHHHHhccCCCccccHHHHHHHHHHHH
Confidence 5666665543 22222 223456788899999988888899999999888764
No 229
>PRK00819 RNA 2'-phosphotransferase; Reviewed
Probab=20.89 E-value=1.9e+02 Score=21.93 Aligned_cols=33 Identities=18% Similarity=0.402 Sum_probs=24.8
Q ss_pred CCCCCCcccHHHHHHHHHHHhhhcCCCCCHHHHHHHH
Q 028131 117 DLRQTGFIEREELKEMVLALLHESDLILSDDVIETIV 153 (213)
Q Consensus 117 D~d~~G~I~~~El~~~l~~~~~~~~~~~~~~~~~~~~ 153 (213)
-.|.+|++..++|...++.- +..++.+.+..++
T Consensus 27 ~ld~~G~v~v~~Ll~~~~~~----~~~~t~~~l~~vV 59 (179)
T PRK00819 27 TLDEEGWVDIDALIEALAKA----YKWVTRELLEAVV 59 (179)
T ss_pred ccCCCCCEEHHHHHHHHHHc----cCCCCHHHHHHHH
Confidence 34788999999998887643 4567888877766
Done!