Query 028133
Match_columns 213
No_of_seqs 206 out of 1123
Neff 6.5
Searched_HMMs 46136
Date Fri Mar 29 06:46:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028133.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028133hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 CHL00118 atpG ATP synthase CF0 100.0 1.1E-30 2.3E-35 211.7 21.7 142 71-212 15-156 (156)
2 PRK07353 F0F1 ATP synthase sub 100.0 4.3E-30 9.3E-35 203.9 21.6 139 74-212 1-139 (140)
3 PRK13455 F0F1 ATP synthase sub 100.0 1.4E-29 3.1E-34 210.0 22.6 150 60-212 11-161 (184)
4 PRK07352 F0F1 ATP synthase sub 100.0 2E-29 4.4E-34 207.4 21.7 148 63-212 5-153 (174)
5 PRK13460 F0F1 ATP synthase sub 100.0 1.7E-29 3.6E-34 207.8 20.9 142 71-212 8-150 (173)
6 PRK14472 F0F1 ATP synthase sub 100.0 2.3E-29 4.9E-34 207.3 21.2 142 71-212 10-152 (175)
7 PRK14473 F0F1 ATP synthase sub 100.0 3.5E-29 7.6E-34 204.0 21.1 140 73-212 2-142 (164)
8 PRK13461 F0F1 ATP synthase sub 100.0 4.8E-29 1E-33 202.2 21.1 138 75-212 1-139 (159)
9 CHL00019 atpF ATP synthase CF0 100.0 9.7E-29 2.1E-33 205.1 21.3 143 70-212 15-158 (184)
10 PRK05759 F0F1 ATP synthase sub 100.0 1.3E-28 2.9E-33 198.4 20.7 138 75-212 1-138 (156)
11 PRK13454 F0F1 ATP synthase sub 100.0 2E-28 4.3E-33 203.0 21.1 145 68-212 16-165 (181)
12 PRK06568 F0F1 ATP synthase sub 100.0 4.2E-28 9.1E-33 196.1 21.2 136 75-210 1-136 (154)
13 PRK14471 F0F1 ATP synthase sub 100.0 3.5E-28 7.5E-33 198.1 20.8 138 75-212 4-142 (164)
14 PRK13453 F0F1 ATP synthase sub 100.0 3.7E-28 8.1E-33 199.9 20.8 137 76-212 15-152 (173)
15 PRK09174 F0F1 ATP synthase sub 100.0 1.4E-27 3E-32 201.4 21.7 134 79-212 54-187 (204)
16 PRK06231 F0F1 ATP synthase sub 100.0 2.6E-27 5.7E-32 199.9 22.9 141 72-212 42-182 (205)
17 PRK08476 F0F1 ATP synthase sub 100.0 6.5E-27 1.4E-31 186.9 21.4 137 74-210 2-139 (141)
18 PRK14474 F0F1 ATP synthase sub 100.0 3.4E-27 7.3E-32 204.7 21.2 138 75-212 1-139 (250)
19 TIGR03321 alt_F1F0_F0_B altern 100.0 3.8E-27 8.2E-32 203.7 21.0 138 75-212 1-139 (246)
20 PRK14475 F0F1 ATP synthase sub 100.0 1E-26 2.2E-31 190.4 21.0 140 73-212 3-144 (167)
21 COG0711 AtpF F0F1-type ATP syn 100.0 1.6E-26 3.5E-31 188.4 20.9 139 74-212 1-140 (161)
22 PRK08475 F0F1 ATP synthase sub 99.9 4.4E-26 9.5E-31 186.8 21.2 131 79-211 23-153 (167)
23 PF00430 ATP-synt_B: ATP synth 99.9 1.1E-26 2.3E-31 181.5 14.7 132 80-211 1-132 (132)
24 TIGR01144 ATP_synt_b ATP synth 99.9 1.9E-25 4.1E-30 178.6 19.3 129 84-212 1-129 (147)
25 PRK09173 F0F1 ATP synthase sub 99.9 4.6E-24 1E-28 173.0 20.6 133 80-212 3-136 (159)
26 PRK13428 F0F1 ATP synthase sub 99.9 1.9E-24 4E-29 201.0 20.8 134 79-212 2-135 (445)
27 PRK06569 F0F1 ATP synthase sub 99.9 1.1E-21 2.3E-26 158.6 21.3 134 79-212 11-144 (155)
28 PRK07352 F0F1 ATP synthase sub 99.2 1.9E-09 4E-14 88.7 18.8 133 63-196 8-148 (174)
29 PRK06568 F0F1 ATP synthase sub 99.1 1.2E-08 2.6E-13 82.8 18.7 122 77-198 7-135 (154)
30 PRK13453 F0F1 ATP synthase sub 99.1 2E-08 4.3E-13 82.7 18.7 125 75-199 19-150 (173)
31 PRK13460 F0F1 ATP synthase sub 99.1 2.1E-08 4.5E-13 82.5 18.6 123 76-198 18-147 (173)
32 CHL00118 atpG ATP synthase CF0 99.1 3.5E-08 7.7E-13 79.9 18.9 124 75-198 23-153 (156)
33 PRK08475 F0F1 ATP synthase sub 99.1 2.2E-08 4.8E-13 82.1 17.6 127 63-189 11-144 (167)
34 CHL00019 atpF ATP synthase CF0 99.0 5E-08 1.1E-12 81.0 19.5 119 79-197 29-154 (184)
35 TIGR02926 AhaH ATP synthase ar 99.0 8.9E-09 1.9E-13 75.4 13.0 83 127-209 3-85 (85)
36 PRK06231 F0F1 ATP synthase sub 99.0 4.7E-08 1E-12 82.7 18.8 126 72-197 46-178 (205)
37 PRK13461 F0F1 ATP synthase sub 99.0 6.6E-08 1.4E-12 78.3 18.8 123 76-198 7-136 (159)
38 PRK14472 F0F1 ATP synthase sub 99.0 7.6E-08 1.7E-12 79.2 19.4 122 77-198 21-149 (175)
39 PRK14475 F0F1 ATP synthase sub 99.0 9.1E-08 2E-12 78.3 19.7 123 77-199 11-142 (167)
40 PRK08404 V-type ATP synthase s 99.0 1.9E-08 4.2E-13 76.4 14.3 86 124-209 4-89 (103)
41 PRK09173 F0F1 ATP synthase sub 99.0 1.2E-07 2.5E-12 76.9 19.7 124 76-199 3-134 (159)
42 PRK14471 F0F1 ATP synthase sub 99.0 1.1E-07 2.3E-12 77.5 19.0 123 76-198 10-139 (164)
43 PRK14473 F0F1 ATP synthase sub 99.0 1.2E-07 2.7E-12 77.1 19.4 123 76-198 10-139 (164)
44 COG0711 AtpF F0F1-type ATP syn 99.0 2.2E-07 4.8E-12 75.8 19.8 121 77-197 9-136 (161)
45 PRK07353 F0F1 ATP synthase sub 99.0 2.1E-07 4.5E-12 73.6 19.0 124 75-198 6-136 (140)
46 PRK05759 F0F1 ATP synthase sub 98.9 2.2E-07 4.7E-12 74.7 18.7 123 76-198 6-135 (156)
47 TIGR01144 ATP_synt_b ATP synth 98.9 3.4E-07 7.3E-12 73.0 19.5 119 81-199 2-127 (147)
48 PRK13455 F0F1 ATP synthase sub 98.9 3.5E-07 7.5E-12 75.9 19.5 120 79-198 31-158 (184)
49 PRK09174 F0F1 ATP synthase sub 98.9 2.8E-07 6E-12 78.0 18.8 125 76-200 55-186 (204)
50 PRK13428 F0F1 ATP synthase sub 98.9 3.1E-07 6.7E-12 86.0 19.4 123 75-197 2-131 (445)
51 PRK14474 F0F1 ATP synthase sub 98.9 4.7E-07 1E-11 78.8 18.9 116 76-191 7-129 (250)
52 PF00430 ATP-synt_B: ATP synth 98.8 1.9E-07 4E-12 72.6 14.7 120 77-196 2-128 (132)
53 PRK13454 F0F1 ATP synthase sub 98.8 7.2E-07 1.6E-11 74.1 18.9 123 76-198 33-162 (181)
54 TIGR03321 alt_F1F0_F0_B altern 98.8 6E-07 1.3E-11 77.8 18.8 116 76-191 7-129 (246)
55 PRK08476 F0F1 ATP synthase sub 98.8 2.1E-06 4.5E-11 68.6 19.7 72 125-196 65-136 (141)
56 TIGR03825 FliH_bacil flagellar 98.5 8.2E-07 1.8E-11 77.3 10.1 95 118-212 25-152 (255)
57 COG2811 NtpF Archaeal/vacuolar 98.2 0.00028 6.1E-09 53.9 15.8 95 117-211 11-107 (108)
58 PRK08404 V-type ATP synthase s 98.1 0.00047 1E-08 52.4 16.2 85 116-200 6-91 (103)
59 TIGR02926 AhaH ATP synthase ar 98.0 0.00021 4.4E-09 52.3 12.5 74 118-191 4-78 (85)
60 TIGR02499 HrpE_YscL_not type I 98.0 0.00027 5.8E-09 56.9 13.6 82 131-212 11-92 (166)
61 PRK06569 F0F1 ATP synthase sub 97.9 0.004 8.8E-08 50.7 19.4 64 79-142 15-81 (155)
62 PF05405 Mt_ATP-synt_B: Mitoch 97.9 0.00066 1.4E-08 55.1 14.7 121 83-203 18-138 (163)
63 PRK06328 type III secretion sy 97.8 0.00059 1.3E-08 58.5 12.8 84 129-212 25-108 (223)
64 PRK03963 V-type ATP synthase s 97.8 0.0012 2.6E-08 55.0 14.1 82 126-207 10-95 (198)
65 PRK09098 type III secretion sy 97.8 0.0011 2.3E-08 57.3 14.1 88 125-212 42-129 (233)
66 PRK01005 V-type ATP synthase s 97.8 0.0021 4.4E-08 54.7 15.4 72 125-200 19-90 (207)
67 PRK06937 type III secretion sy 97.6 0.0021 4.5E-08 54.2 13.5 84 129-212 26-109 (204)
68 PRK01558 V-type ATP synthase s 97.6 0.0024 5.3E-08 53.7 13.4 75 128-206 17-91 (198)
69 PF06188 HrpE: HrpE/YscL/FliH 97.5 0.0034 7.3E-08 52.7 13.6 82 131-212 28-109 (191)
70 COG2811 NtpF Archaeal/vacuolar 97.5 0.0086 1.9E-07 45.8 13.6 79 125-203 9-87 (108)
71 PRK03963 V-type ATP synthase s 97.3 0.005 1.1E-07 51.3 12.3 72 126-200 21-96 (198)
72 PRK01005 V-type ATP synthase s 97.3 0.0032 7E-08 53.5 11.2 69 118-186 22-91 (207)
73 PF03179 V-ATPase_G: Vacuolar 97.2 0.013 2.8E-07 44.2 12.3 89 123-211 15-103 (105)
74 PRK02292 V-type ATP synthase s 97.2 0.019 4.1E-07 47.5 14.0 72 129-200 12-83 (188)
75 TIGR03825 FliH_bacil flagellar 97.1 0.022 4.8E-07 49.6 14.6 89 123-211 41-155 (255)
76 PRK01194 V-type ATP synthase s 97.1 0.015 3.2E-07 48.5 12.8 61 129-189 12-72 (185)
77 PRK06669 fliH flagellar assemb 97.1 0.042 9.1E-07 48.4 16.4 88 124-211 90-181 (281)
78 PF01991 vATP-synt_E: ATP synt 97.1 0.019 4.1E-07 47.2 13.5 78 129-206 4-81 (198)
79 PF12072 DUF3552: Domain of un 97.1 0.022 4.7E-07 48.0 13.4 6 93-98 14-19 (201)
80 PF03179 V-ATPase_G: Vacuolar 96.9 0.027 5.8E-07 42.4 11.7 77 127-203 8-84 (105)
81 PRK01558 V-type ATP synthase s 96.9 0.18 3.9E-06 42.4 17.7 76 119-194 18-94 (198)
82 PF01991 vATP-synt_E: ATP synt 96.8 0.03 6.5E-07 46.0 11.6 48 140-187 4-51 (198)
83 PF06635 NolV: Nodulation prot 96.7 0.056 1.2E-06 45.9 12.5 81 132-212 29-109 (207)
84 COG1390 NtpE Archaeal/vacuolar 96.4 0.12 2.6E-06 43.5 13.1 78 130-207 14-91 (194)
85 KOG1772 Vacuolar H+-ATPase V1 96.3 0.28 6.1E-06 37.4 13.0 80 131-210 14-100 (108)
86 COG1390 NtpE Archaeal/vacuolar 96.2 0.15 3.3E-06 42.9 12.7 36 149-184 48-83 (194)
87 TIGR01069 mutS2 MutS2 family p 96.2 0.15 3.2E-06 51.2 14.4 72 105-176 518-589 (771)
88 PF02326 YMF19: Plant ATP synt 96.1 0.038 8.3E-07 40.6 7.3 63 79-141 10-72 (86)
89 PF06188 HrpE: HrpE/YscL/FliH 96.1 0.2 4.4E-06 41.9 12.7 81 117-197 25-109 (191)
90 PRK12704 phosphodiesterase; Pr 96.1 0.41 8.9E-06 46.0 16.3 8 81-88 7-14 (520)
91 PRK00409 recombination and DNA 96.0 0.24 5.3E-06 49.8 15.2 71 106-180 524-594 (782)
92 TIGR01147 V_ATP_synt_G vacuola 96.0 0.49 1.1E-05 36.6 13.4 43 131-173 14-56 (113)
93 TIGR01147 V_ATP_synt_G vacuola 95.8 0.5 1.1E-05 36.6 12.9 98 112-209 6-103 (113)
94 PRK09098 type III secretion sy 95.8 0.67 1.5E-05 40.0 15.2 31 128-158 34-64 (233)
95 PF06103 DUF948: Bacterial pro 95.8 0.28 6.1E-06 35.7 11.1 67 81-148 3-69 (90)
96 PRK00106 hypothetical protein; 95.7 0.81 1.8E-05 44.2 16.4 44 137-180 46-89 (535)
97 MTH00169 ATP8 ATP synthase F0 95.4 0.051 1.1E-06 38.2 5.6 38 79-116 11-48 (67)
98 PRK12705 hypothetical protein; 95.4 2.7 5.8E-05 40.4 19.1 30 180-209 152-181 (508)
99 PRK02292 V-type ATP synthase s 95.4 0.46 1E-05 39.2 12.3 80 124-203 18-98 (188)
100 PRK01194 V-type ATP synthase s 95.3 0.36 7.7E-06 40.2 11.2 74 126-202 20-97 (185)
101 MTH00025 ATP8 ATP synthase F0 95.0 0.072 1.6E-06 37.8 5.3 39 79-117 11-49 (70)
102 PRK06669 fliH flagellar assemb 94.8 1.4 3E-05 38.7 14.4 47 123-169 78-124 (281)
103 PRK00106 hypothetical protein; 94.8 4.2 9E-05 39.4 18.9 44 129-172 49-92 (535)
104 TIGR01069 mutS2 MutS2 family p 94.6 2.1 4.6E-05 43.1 16.7 87 104-191 503-589 (771)
105 KOG1772 Vacuolar H+-ATPase V1 94.4 1.8 3.8E-05 33.1 13.6 91 110-200 4-94 (108)
106 KOG3976 Mitochondrial F1F0-ATP 94.2 3.4 7.4E-05 36.0 18.8 44 83-126 99-142 (247)
107 PRK00409 recombination and DNA 94.1 3.7 8E-05 41.5 17.1 87 104-191 508-594 (782)
108 COG1317 FliH Flagellar biosynt 93.8 2.5 5.4E-05 36.5 13.3 39 174-212 95-133 (234)
109 PRK15322 invasion protein OrgB 93.7 3.9 8.5E-05 34.8 13.8 55 123-180 13-67 (210)
110 PF06936 Selenoprotein_S: Sele 93.3 0.92 2E-05 38.1 9.5 27 83-110 38-64 (190)
111 PRK06328 type III secretion sy 93.2 4.8 0.00011 34.4 14.4 41 122-162 29-69 (223)
112 PF12072 DUF3552: Domain of un 92.8 5.2 0.00011 33.5 19.7 67 81-147 7-81 (201)
113 PRK12705 hypothetical protein; 92.4 11 0.00024 36.3 18.7 21 126-146 59-79 (508)
114 TIGR02499 HrpE_YscL_not type I 92.3 4.8 0.0001 32.0 13.9 77 123-206 14-90 (166)
115 PRK04654 sec-independent trans 91.7 5.3 0.00012 34.1 12.1 7 74-80 1-7 (214)
116 PRK06397 V-type ATP synthase s 91.0 5.5 0.00012 30.1 11.0 72 105-176 13-89 (111)
117 PRK00247 putative inner membra 90.6 7 0.00015 36.9 13.0 16 82-97 260-275 (429)
118 PF04120 Iron_permease: Low af 90.4 4 8.7E-05 32.4 9.6 70 71-142 31-114 (132)
119 PF06936 Selenoprotein_S: Sele 90.3 5.4 0.00012 33.6 10.8 27 85-111 36-62 (190)
120 TIGR03319 YmdA_YtgF conserved 90.2 12 0.00025 36.1 14.5 31 179-209 157-187 (514)
121 KOG1962 B-cell receptor-associ 89.9 12 0.00026 32.2 14.0 87 85-179 102-188 (216)
122 PRK15354 type III secretion sy 89.1 3.8 8.1E-05 35.1 9.0 15 174-188 108-122 (224)
123 PRK11637 AmiB activator; Provi 88.6 21 0.00045 33.2 16.9 42 106-147 44-85 (428)
124 COG4741 Predicted secreted end 87.9 14 0.00029 30.3 12.6 22 100-121 24-45 (175)
125 PF03938 OmpH: Outer membrane 87.2 13 0.00028 29.3 15.3 47 162-208 82-128 (158)
126 COG1970 MscL Large-conductance 86.5 1.4 3.1E-05 34.7 4.6 33 77-110 68-101 (130)
127 PRK04098 sec-independent trans 86.4 15 0.00033 30.0 10.7 7 74-80 1-7 (158)
128 COG3599 DivIVA Cell division i 86.2 20 0.00044 30.6 14.6 51 107-157 49-101 (212)
129 KOG1029 Endocytic adaptor prot 86.1 23 0.00049 36.1 13.5 21 105-125 313-333 (1118)
130 PRK09039 hypothetical protein; 85.7 28 0.00061 31.7 19.5 34 81-114 25-58 (343)
131 PF01741 MscL: Large-conductan 85.5 1.6 3.4E-05 34.5 4.5 32 77-109 68-100 (128)
132 PF05103 DivIVA: DivIVA protei 85.3 0.36 7.9E-06 37.1 0.8 52 133-188 63-114 (131)
133 PRK15322 invasion protein OrgB 84.9 23 0.00051 30.2 13.8 82 129-210 8-89 (210)
134 PRK06032 fliH flagellar assemb 84.9 18 0.00038 30.3 10.9 36 177-212 68-103 (199)
135 PF02108 FliH: Flagellar assem 84.4 2.9 6.3E-05 31.5 5.5 40 172-211 3-42 (128)
136 PRK01919 tatB sec-independent 84.1 21 0.00046 29.5 10.6 7 74-80 1-7 (169)
137 PRK10930 FtsH protease regulat 83.6 29 0.00062 32.7 12.7 15 103-117 201-215 (419)
138 TIGR01933 hflK HflK protein. H 82.7 29 0.00062 29.8 11.7 6 103-108 105-110 (261)
139 COG3599 DivIVA Cell division i 82.3 31 0.00067 29.5 15.1 29 130-158 85-113 (212)
140 PRK00888 ftsB cell division pr 82.2 19 0.00042 27.2 9.3 12 89-100 10-21 (105)
141 cd03404 Band_7_HflK Band_7_Hfl 81.6 29 0.00062 29.8 11.3 7 103-109 132-138 (266)
142 PRK09731 putative general secr 80.2 14 0.00031 30.8 8.4 34 81-114 38-71 (178)
143 COG5521 Predicted integral mem 80.0 2.4 5.1E-05 37.1 3.8 50 45-98 214-263 (275)
144 PF06103 DUF948: Bacterial pro 79.3 21 0.00045 25.7 10.7 55 85-143 3-57 (90)
145 PRK10930 FtsH protease regulat 79.2 20 0.00043 33.7 10.0 42 152-193 263-304 (419)
146 TIGR01933 hflK HflK protein. H 78.8 40 0.00086 28.9 11.2 19 138-156 168-186 (261)
147 COG1862 YajC Preprotein transl 78.2 5.5 0.00012 30.0 4.9 33 84-116 11-43 (97)
148 TIGR01932 hflC HflC protein. H 78.1 48 0.001 29.7 11.9 12 200-211 287-298 (317)
149 PF14362 DUF4407: Domain of un 77.8 49 0.0011 29.1 19.5 13 86-98 53-65 (301)
150 PRK06937 type III secretion sy 77.6 40 0.00088 28.1 14.0 33 125-157 33-65 (204)
151 PF06160 EzrA: Septation ring 77.0 75 0.0016 30.9 16.4 73 82-155 6-89 (560)
152 PF09726 Macoilin: Transmembra 76.4 89 0.0019 31.4 15.0 9 182-190 549-557 (697)
153 PRK06800 fliH flagellar assemb 76.0 48 0.001 28.1 13.2 79 131-211 46-124 (228)
154 PRK13386 fliH flagellar assemb 75.3 29 0.00062 29.9 9.3 37 176-212 102-138 (236)
155 KOG1029 Endocytic adaptor prot 74.7 1.1E+02 0.0023 31.5 14.5 33 145-177 378-410 (1118)
156 PRK13955 mscL large-conductanc 73.6 4.3 9.3E-05 32.2 3.4 29 77-106 64-93 (130)
157 PRK00708 sec-independent trans 73.5 58 0.0013 27.9 12.5 8 74-81 1-8 (209)
158 PF05957 DUF883: Bacterial pro 73.5 32 0.0007 25.0 11.2 40 124-163 3-42 (94)
159 TIGR03752 conj_TIGR03752 integ 73.4 47 0.001 31.8 10.7 25 113-137 60-84 (472)
160 COG4768 Uncharacterized protei 73.3 46 0.00099 26.6 18.4 69 80-149 7-75 (139)
161 PRK05585 yajC preprotein trans 73.3 9.9 0.00022 28.9 5.3 17 96-112 32-48 (106)
162 COG0233 Frr Ribosome recycling 73.2 48 0.001 27.8 9.7 84 97-183 101-184 (187)
163 PRK10780 periplasmic chaperone 73.1 47 0.001 26.7 15.8 36 171-206 98-133 (165)
164 PRK05687 fliH flagellar assemb 72.9 60 0.0013 27.8 12.3 36 177-212 116-151 (246)
165 PF04612 T2SM: Type II secreti 72.6 1.2 2.5E-05 35.5 0.0 48 82-129 18-65 (160)
166 PF10828 DUF2570: Protein of u 72.5 39 0.00085 25.5 13.7 14 107-120 30-43 (110)
167 PF01765 RRF: Ribosome recycli 71.4 53 0.0011 26.5 10.2 74 108-182 90-163 (165)
168 PF14613 DUF4449: Protein of u 70.6 59 0.0013 26.7 11.6 19 90-108 18-36 (164)
169 COG1422 Predicted membrane pro 70.3 67 0.0015 27.3 10.0 23 79-101 48-70 (201)
170 PRK01770 sec-independent trans 68.9 66 0.0014 26.7 11.9 7 74-80 1-7 (171)
171 PRK04778 septation ring format 68.3 1.2E+02 0.0026 29.4 16.6 77 104-180 31-129 (569)
172 COG4942 Membrane-bound metallo 67.9 1.1E+02 0.0024 28.9 15.3 55 104-158 33-87 (420)
173 PF05103 DivIVA: DivIVA protei 67.9 3.6 7.8E-05 31.5 1.8 41 131-175 72-112 (131)
174 PRK13953 mscL large-conductanc 67.9 9.8 0.00021 29.9 4.2 30 77-107 64-94 (125)
175 PRK00404 tatB sec-independent 66.1 68 0.0015 25.8 9.0 7 74-80 1-7 (141)
176 PRK11677 hypothetical protein; 65.7 67 0.0014 25.5 11.9 39 128-166 41-79 (134)
177 cd03405 Band_7_HflC Band_7_Hfl 65.4 64 0.0014 27.1 9.2 6 104-109 111-116 (242)
178 PF05529 Bap31: B-cell recepto 65.1 76 0.0017 26.0 12.9 24 85-108 106-129 (192)
179 PRK11029 FtsH protease regulat 64.7 74 0.0016 29.0 9.9 12 74-85 86-97 (334)
180 PF03938 OmpH: Outer membrane 64.4 67 0.0015 25.1 12.3 20 99-118 33-52 (158)
181 PRK13954 mscL large-conductanc 63.4 11 0.00024 29.4 3.7 29 77-106 61-90 (119)
182 PRK06397 V-type ATP synthase s 62.5 66 0.0014 24.4 12.7 52 124-175 22-73 (111)
183 TIGR01932 hflC HflC protein. H 62.5 1.1E+02 0.0023 27.5 10.5 13 72-84 84-96 (317)
184 PLN00063 photosystem II core c 62.0 50 0.0011 27.7 7.5 86 22-109 25-116 (194)
185 PRK00567 mscL large-conductanc 61.9 13 0.00028 29.6 3.9 29 77-106 71-100 (134)
186 PRK13952 mscL large-conductanc 61.8 14 0.00031 29.6 4.2 30 76-106 82-112 (142)
187 TIGR00220 mscL large conductan 60.0 17 0.00036 28.7 4.2 28 78-106 67-95 (127)
188 KOG0718 Molecular chaperone (D 59.9 69 0.0015 30.9 8.9 29 82-110 378-406 (546)
189 PF12128 DUF3584: Protein of u 59.8 2.4E+02 0.0053 30.0 17.7 6 72-77 581-586 (1201)
190 PRK12585 putative monovalent c 59.4 1.1E+02 0.0024 25.9 12.1 20 94-113 74-93 (197)
191 PF11286 DUF3087: Protein of u 59.4 63 0.0014 26.6 7.6 33 69-103 43-75 (165)
192 PF08776 VASP_tetra: VASP tetr 59.1 41 0.00088 21.3 5.0 25 148-172 11-35 (40)
193 PF12273 RCR: Chitin synthesis 58.7 10 0.00023 29.4 2.9 18 79-96 2-19 (130)
194 TIGR00739 yajC preprotein tran 58.7 22 0.00047 25.8 4.4 23 89-111 10-32 (84)
195 PTZ00491 major vault protein; 57.5 2.4E+02 0.0051 29.2 13.3 10 53-62 572-581 (850)
196 PF07798 DUF1640: Protein of u 57.2 1.1E+02 0.0023 25.0 14.6 32 125-156 79-110 (177)
197 KOG4403 Cell surface glycoprot 56.8 1.9E+02 0.004 27.8 13.8 28 38-65 180-208 (575)
198 PRK11029 FtsH protease regulat 56.3 1.6E+02 0.0034 26.8 10.8 8 103-110 219-226 (334)
199 KOG2302 T-type voltage-gated C 56.0 73 0.0016 33.8 8.9 66 72-143 1352-1419(1956)
200 PRK06531 yajC preprotein trans 55.6 24 0.00053 27.2 4.4 17 96-112 16-32 (113)
201 PF06295 DUF1043: Protein of u 55.2 98 0.0021 24.1 11.7 41 129-169 38-78 (128)
202 PRK01433 hscA chaperone protei 55.0 1.6E+02 0.0034 28.9 11.0 10 145-154 513-522 (595)
203 PRK15347 two component system 54.5 2.4E+02 0.0051 28.2 15.9 22 88-109 310-331 (921)
204 PRK15354 type III secretion sy 54.3 1.4E+02 0.0031 25.7 16.7 30 130-159 49-78 (224)
205 TIGR03545 conserved hypothetic 54.2 2.2E+02 0.0048 27.8 13.1 22 100-121 166-187 (555)
206 PRK11637 AmiB activator; Provi 54.2 1.8E+02 0.004 26.9 16.0 44 103-146 45-91 (428)
207 PRK13895 conjugal transfer pro 52.3 1.2E+02 0.0027 24.4 12.8 24 141-164 65-88 (144)
208 PRK05886 yajC preprotein trans 52.2 42 0.00091 25.7 5.2 22 89-110 11-32 (109)
209 PRK00083 frr ribosome recyclin 52.1 1.4E+02 0.003 24.8 9.5 82 98-182 100-181 (185)
210 KOG2668 Flotillins [Intracellu 52.0 2E+02 0.0044 26.8 14.0 49 158-206 321-369 (428)
211 COG4023 SBH1 Preprotein transl 51.8 19 0.0004 24.5 2.8 31 72-102 27-57 (57)
212 PF11382 DUF3186: Protein of u 51.5 1.1E+02 0.0024 27.3 8.7 46 94-139 24-69 (308)
213 PF04977 DivIC: Septum formati 51.2 77 0.0017 21.6 6.3 7 100-106 13-19 (80)
214 TIGR00540 hemY_coli hemY prote 51.1 1.5E+02 0.0032 27.1 9.7 10 103-112 72-81 (409)
215 cd03401 Band_7_prohibitin Band 51.1 56 0.0012 26.5 6.3 7 104-110 112-118 (196)
216 PF10960 DUF2762: Protein of u 51.1 86 0.0019 22.2 7.6 10 109-118 39-48 (71)
217 cd00520 RRF Ribosome recycling 51.1 1.4E+02 0.003 24.6 8.8 39 100-140 98-136 (179)
218 PF02167 Cytochrom_C1: Cytochr 51.0 16 0.00035 31.3 3.1 25 79-103 195-219 (219)
219 PF12729 4HB_MCP_1: Four helix 50.8 1.1E+02 0.0023 23.2 16.7 7 92-98 22-28 (181)
220 COG0330 HflC Membrane protease 50.8 1.7E+02 0.0036 25.4 10.7 18 140-157 207-224 (291)
221 PLN00077 photosystem II reacti 50.7 29 0.00063 27.1 4.1 50 52-101 59-115 (128)
222 TIGR00496 frr ribosome recycli 50.7 1.4E+02 0.0031 24.6 9.5 83 97-182 90-172 (176)
223 KOG4759 Ribosome recycling fac 50.7 1.4E+02 0.003 26.4 8.8 66 126-194 195-260 (263)
224 PLN02956 PSII-Q subunit 49.8 1.6E+02 0.0034 24.8 14.0 37 86-122 94-130 (185)
225 PF07123 PsbW: Photosystem II 49.6 65 0.0014 25.8 6.0 45 58-102 76-127 (138)
226 TIGR03185 DNA_S_dndD DNA sulfu 48.9 2.7E+02 0.0059 27.4 13.6 41 110-150 210-250 (650)
227 KOG0977 Nuclear envelope prote 48.9 2.7E+02 0.0059 27.3 12.8 19 154-172 251-269 (546)
228 PRK14857 tatA twin arginine tr 48.6 1.1E+02 0.0024 22.7 7.0 9 73-81 2-10 (90)
229 PF12669 P12: Virus attachment 47.1 18 0.00039 24.5 2.2 20 81-100 2-21 (58)
230 PRK06771 hypothetical protein; 46.8 1.2E+02 0.0025 22.7 6.7 22 101-122 22-43 (93)
231 PRK14858 tatA twin arginine tr 45.2 1.4E+02 0.003 22.9 7.6 7 74-80 1-7 (108)
232 cd03407 Band_7_4 A subgroup of 44.9 2E+02 0.0044 24.7 10.2 14 103-117 102-115 (262)
233 COG3883 Uncharacterized protei 44.7 2.3E+02 0.0049 25.2 15.0 57 85-141 10-67 (265)
234 KOG4759 Ribosome recycling fac 44.6 2.3E+02 0.0049 25.2 9.3 73 108-183 188-260 (263)
235 PHA02650 hypothetical protein; 44.5 14 0.0003 26.8 1.4 32 77-108 47-78 (81)
236 PF10805 DUF2730: Protein of u 44.5 1.3E+02 0.0029 22.5 10.8 20 78-97 8-29 (106)
237 PRK10747 putative protoheme IX 44.4 2.5E+02 0.0054 25.6 12.5 10 103-112 72-81 (398)
238 PF12732 YtxH: YtxH-like prote 44.1 1.1E+02 0.0023 21.2 8.0 17 86-102 5-21 (74)
239 PRK11091 aerobic respiration c 44.0 3.3E+02 0.0072 26.9 18.8 10 112-121 85-94 (779)
240 PF01086 Clathrin_lg_ch: Clath 43.9 52 0.0011 28.1 5.2 14 102-115 113-126 (225)
241 PF13334 DUF4094: Domain of un 43.8 32 0.00069 25.6 3.4 24 79-102 4-27 (95)
242 PLN00092 photosystem I reactio 43.2 74 0.0016 25.2 5.3 47 52-98 69-122 (137)
243 PF13801 Metal_resist: Heavy-m 40.9 1.3E+02 0.0029 21.5 8.4 27 122-148 44-70 (125)
244 PF08566 Pam17: Mitochondrial 40.9 2.1E+02 0.0046 23.8 10.0 38 71-108 68-107 (173)
245 PF01765 RRF: Ribosome recycli 40.8 1.9E+02 0.0041 23.2 11.9 69 125-194 96-164 (165)
246 COG2011 AbcD ABC-type metal io 40.8 48 0.001 28.6 4.3 50 61-110 164-222 (222)
247 PF04011 LemA: LemA family; I 40.6 2E+02 0.0043 23.4 14.6 25 100-124 36-60 (186)
248 PRK09702 PTS system arbutin-sp 40.6 35 0.00075 27.9 3.4 23 80-102 11-33 (161)
249 KOG4031 Vesicle coat protein c 40.3 2.4E+02 0.0052 24.2 8.9 16 102-117 107-122 (216)
250 PF00672 HAMP: HAMP domain; I 40.1 29 0.00063 22.9 2.5 27 82-108 6-32 (70)
251 TIGR03142 cytochro_ccmI cytoch 39.7 1.4E+02 0.003 22.7 6.5 11 124-134 41-51 (117)
252 PF10498 IFT57: Intra-flagella 39.4 3.1E+02 0.0067 25.3 15.3 20 186-205 332-351 (359)
253 PF10112 Halogen_Hydrol: 5-bro 39.4 2.2E+02 0.0047 23.4 15.9 44 112-155 71-119 (199)
254 PF05405 Mt_ATP-synt_B: Mitoch 38.9 2E+02 0.0043 22.9 15.2 22 94-115 33-54 (163)
255 PF00664 ABC_membrane: ABC tra 38.5 2E+02 0.0043 22.8 9.8 33 75-107 137-169 (275)
256 COG1730 GIM5 Predicted prefold 38.4 2.1E+02 0.0045 23.0 7.5 38 102-139 94-131 (145)
257 TIGR00831 a_cpa1 Na+/H+ antipo 38.2 3.7E+02 0.008 25.8 12.9 13 96-108 396-408 (525)
258 COG3462 Predicted membrane pro 38.2 51 0.0011 25.5 3.7 12 131-142 104-115 (117)
259 TIGR03785 marine_sort_HK prote 37.6 4.2E+02 0.0092 26.3 16.1 15 94-108 425-439 (703)
260 PRK03947 prefoldin subunit alp 36.7 1.8E+02 0.0038 22.5 6.8 49 97-145 86-137 (140)
261 COG4046 Uncharacterized protei 36.6 98 0.0021 28.4 5.8 26 113-138 44-69 (368)
262 PF04341 DUF485: Protein of un 36.5 1.1E+02 0.0024 22.3 5.2 43 72-115 45-89 (91)
263 COG4575 ElaB Uncharacterized c 36.3 1.9E+02 0.0042 22.0 9.1 18 124-141 13-30 (104)
264 PF08776 VASP_tetra: VASP tetr 36.2 1.1E+02 0.0024 19.3 6.0 31 157-187 5-35 (40)
265 COG0330 HflC Membrane protease 35.8 2.3E+02 0.0049 24.5 8.0 33 138-172 192-224 (291)
266 PF02699 YajC: Preprotein tran 35.8 45 0.00098 23.9 3.0 23 86-108 6-28 (82)
267 TIGR02832 spo_yunB sporulation 35.7 82 0.0018 26.7 5.0 37 80-116 10-46 (204)
268 PRK14161 heat shock protein Gr 35.7 2.6E+02 0.0055 23.2 9.6 23 161-183 49-71 (178)
269 PF10186 Atg14: UV radiation r 35.6 2.8E+02 0.0061 23.6 15.9 7 102-108 42-48 (302)
270 COG5085 Predicted membrane pro 35.6 1.8E+02 0.0038 25.1 6.9 43 80-122 87-132 (230)
271 KOG4503 Uncharacterized conser 35.6 1.8E+02 0.0038 25.1 6.9 43 80-122 87-132 (230)
272 PF06295 DUF1043: Protein of u 35.3 2.1E+02 0.0046 22.1 11.4 76 82-159 4-79 (128)
273 PF07332 DUF1469: Protein of u 35.3 1.8E+02 0.004 21.6 6.6 37 83-119 77-116 (121)
274 PF14163 SieB: Superinfection 35.3 1.9E+02 0.0041 22.8 6.8 16 52-67 6-21 (151)
275 COG0598 CorA Mg2+ and Co2+ tra 35.2 68 0.0015 28.6 4.7 17 52-68 264-280 (322)
276 PF05933 Fun_ATP-synt_8: Funga 35.1 1.3E+02 0.0028 19.7 5.0 31 80-110 12-42 (48)
277 PF14899 DUF4492: Domain of un 34.4 91 0.002 21.7 4.1 24 84-107 25-48 (64)
278 PRK11677 hypothetical protein; 34.3 2.4E+02 0.0051 22.4 12.1 42 119-160 43-84 (134)
279 COG4280 Predicted membrane pro 34.0 94 0.002 26.7 5.0 61 56-120 43-103 (236)
280 PF07798 DUF1640: Protein of u 33.9 2.6E+02 0.0056 22.7 16.3 79 111-189 72-153 (177)
281 KOG4478 Uncharacterized membra 33.7 51 0.0011 28.0 3.4 21 38-62 78-98 (217)
282 KOG2629 Peroxisomal membrane a 33.3 3.7E+02 0.0079 24.3 14.5 32 81-112 86-118 (300)
283 PHA01547 putative internal vir 33.0 2.9E+02 0.0063 23.1 14.6 48 165-212 96-143 (206)
284 PRK10297 PTS system N,N'-diace 32.9 1.5E+02 0.0032 28.1 6.8 32 86-117 409-440 (452)
285 TIGR00570 cdk7 CDK-activating 32.5 3.8E+02 0.0083 24.3 13.5 15 104-118 96-110 (309)
286 KOG4807 F-actin binding protei 32.5 4.5E+02 0.0097 25.0 12.6 86 125-210 351-442 (593)
287 PRK10549 signal transduction h 32.3 3.8E+02 0.0082 24.1 11.9 20 90-109 179-198 (466)
288 TIGR02203 MsbA_lipidA lipid A 32.1 4.5E+02 0.0096 24.9 10.0 33 75-107 150-182 (571)
289 PF01093 Clusterin: Clusterin; 31.9 3.1E+02 0.0067 26.1 8.6 53 100-152 25-80 (436)
290 PF11119 DUF2633: Protein of u 31.4 1.6E+02 0.0034 20.2 4.8 19 79-97 9-27 (59)
291 COG4575 ElaB Uncharacterized c 31.2 2.4E+02 0.0052 21.5 9.6 35 136-170 36-70 (104)
292 TIGR02977 phageshock_pspA phag 30.9 3.2E+02 0.007 22.9 15.0 49 106-154 28-76 (219)
293 PHA00276 phage lambda Rz-like 30.6 2.9E+02 0.0063 22.3 8.5 90 112-201 38-140 (144)
294 COG2857 CYT1 Cytochrome c1 [En 30.6 35 0.00077 29.7 2.0 24 80-103 226-249 (250)
295 PRK09510 tolA cell envelope in 30.4 4.6E+02 0.0099 24.5 16.9 14 80-93 18-31 (387)
296 KOG1664 Vacuolar H+-ATPase V1 30.1 3.6E+02 0.0078 23.2 11.8 49 139-187 18-66 (220)
297 PF03908 Sec20: Sec20; InterP 29.9 52 0.0011 23.9 2.6 19 84-102 73-91 (92)
298 PF12037 DUF3523: Domain of un 29.8 4.1E+02 0.0088 23.7 13.8 18 154-171 165-182 (276)
299 KOG0804 Cytoplasmic Zn-finger 29.7 5.2E+02 0.011 24.9 15.2 21 183-203 429-449 (493)
300 PF07946 DUF1682: Protein of u 29.5 4.1E+02 0.009 23.7 9.2 26 97-122 249-276 (321)
301 PTZ00186 heat shock 70 kDa pre 29.5 5.5E+02 0.012 25.5 10.3 6 61-66 482-487 (657)
302 PF06643 DUF1158: Protein of u 29.3 1.3E+02 0.0029 21.5 4.3 15 52-66 16-31 (82)
303 PF08496 Peptidase_S49_N: Pept 28.8 3.1E+02 0.0068 22.1 8.5 16 103-118 47-62 (155)
304 KOG3778 Uncharacterized conser 28.4 68 0.0015 30.8 3.6 12 58-69 535-546 (603)
305 cd03407 Band_7_4 A subgroup of 28.2 3.8E+02 0.0083 22.9 13.6 8 202-209 230-237 (262)
306 PF07083 DUF1351: Protein of u 28.1 3.7E+02 0.008 22.7 13.1 81 116-197 39-119 (215)
307 KOG0994 Extracellular matrix g 28.0 8.3E+02 0.018 26.8 14.5 18 192-209 1734-1751(1758)
308 PTZ00473 Plasmodium Vir superf 28.0 79 0.0017 29.7 3.9 34 84-119 275-308 (420)
309 PLN03184 chloroplast Hsp70; Pr 27.9 6.1E+02 0.013 25.2 11.2 16 130-145 566-581 (673)
310 PF05545 FixQ: Cbb3-type cytoc 27.9 1E+02 0.0022 19.6 3.4 19 83-101 14-32 (49)
311 KOG3251 Golgi SNAP receptor co 27.7 63 0.0014 27.7 3.0 22 78-99 190-212 (213)
312 COG3334 Uncharacterized conser 27.6 3.8E+02 0.0082 22.6 11.2 39 72-110 3-42 (192)
313 COG2825 HlpA Outer membrane pr 27.5 3.4E+02 0.0074 22.2 14.2 25 97-121 43-67 (170)
314 PRK02224 chromosome segregatio 27.4 6.6E+02 0.014 25.4 13.8 7 15-21 454-460 (880)
315 COG3149 PulM Type II secretory 27.0 2.7E+02 0.0058 23.3 6.4 26 85-111 42-67 (181)
316 KOG4304 Transcriptional repres 26.9 3.2E+02 0.0069 23.9 7.3 55 97-158 32-86 (250)
317 COG1826 TatA Sec-independent p 26.7 1.3E+02 0.0028 22.1 4.2 7 74-80 1-7 (94)
318 PRK13857 type IV secretion sys 26.6 1.4E+02 0.003 23.3 4.4 38 31-68 12-49 (120)
319 TIGR01192 chvA glucan exporter 26.6 5.9E+02 0.013 24.5 10.4 31 75-105 152-182 (585)
320 PRK03100 sec-independent trans 26.5 3.3E+02 0.0072 21.7 9.3 7 74-80 1-8 (136)
321 cd00520 RRF Ribosome recycling 26.4 3.6E+02 0.0079 22.1 10.5 29 164-192 148-176 (179)
322 COG4420 Predicted membrane pro 26.4 4E+02 0.0086 22.5 11.2 23 79-101 58-80 (191)
323 COG3879 Uncharacterized protei 26.4 4.5E+02 0.0097 23.1 12.4 39 105-143 46-84 (247)
324 PRK09343 prefoldin subunit bet 26.3 3E+02 0.0065 21.1 6.6 40 103-142 72-111 (121)
325 PF10107 Endonuc_Holl: Endonuc 26.2 3.6E+02 0.0079 22.0 11.5 23 98-120 11-33 (156)
326 PF04012 PspA_IM30: PspA/IM30 26.1 3.8E+02 0.0082 22.2 14.7 50 105-154 26-75 (221)
327 PRK09702 PTS system arbutin-sp 25.8 78 0.0017 25.8 3.2 23 77-99 13-35 (161)
328 PF01544 CorA: CorA-like Mg2+ 25.8 59 0.0013 27.6 2.6 15 53-67 237-251 (292)
329 COG1842 PspA Phage shock prote 25.7 4.3E+02 0.0093 22.7 14.5 102 101-207 2-103 (225)
330 PF07047 OPA3: Optic atrophy 3 25.7 3.2E+02 0.007 21.3 8.1 26 80-105 77-102 (134)
331 PRK09470 cpxA two-component se 25.5 4.9E+02 0.011 23.3 12.4 22 90-111 181-202 (461)
332 TIGR01193 bacteriocin_ABC ABC- 25.5 2.6E+02 0.0057 27.6 7.3 32 75-106 291-322 (708)
333 PRK00045 hemA glutamyl-tRNA re 25.4 5.5E+02 0.012 23.8 11.4 20 148-167 343-362 (423)
334 TIGR02791 VirB5 P-type DNA tra 25.1 4.2E+02 0.009 22.3 8.0 18 120-137 49-66 (220)
335 PF07431 DUF1512: Protein of u 25.0 4.1E+02 0.0089 24.6 7.9 15 82-96 6-20 (355)
336 PF13937 DUF4212: Domain of un 25.0 2.7E+02 0.0059 20.1 7.1 48 63-111 30-77 (81)
337 PF06459 RR_TM4-6: Ryanodine R 25.0 54 0.0012 29.1 2.2 11 84-94 182-192 (274)
338 PF10222 DUF2152: Uncharacteri 24.9 83 0.0018 31.1 3.7 42 60-101 543-590 (604)
339 COG4736 CcoQ Cbb3-type cytochr 24.9 87 0.0019 21.5 2.7 30 82-111 12-41 (60)
340 cd07591 BAR_Rvs161p The Bin/Am 24.8 3.2E+02 0.0069 23.2 6.9 15 100-114 108-122 (224)
341 PRK11085 magnesium/nickel/coba 24.5 1.4E+02 0.0031 26.9 4.8 18 52-69 258-275 (316)
342 PRK10755 sensor protein BasS/P 24.4 4.7E+02 0.01 22.7 15.6 21 86-106 72-92 (356)
343 PF15290 Syntaphilin: Golgi-lo 24.4 5.3E+02 0.011 23.3 12.4 32 104-135 74-105 (305)
344 PF15361 RIC3: Resistance to i 24.3 72 0.0016 25.8 2.6 14 85-98 88-101 (152)
345 PHA03047 IMV membrane receptor 24.3 68 0.0015 21.4 2.0 19 83-101 33-51 (53)
346 PRK04863 mukB cell division pr 24.1 6.7E+02 0.014 27.8 10.4 89 103-192 986-1074(1486)
347 PHA02724 hydrophobic IMV membr 24.1 49 0.0011 22.1 1.3 19 83-101 33-51 (53)
348 PRK13561 putative diguanylate 24.0 3E+02 0.0065 26.6 7.4 25 88-112 160-184 (651)
349 PF11875 DUF3395: Domain of un 24.0 3.8E+02 0.0082 21.4 7.2 25 130-154 13-37 (151)
350 PF14276 DUF4363: Domain of un 23.8 3.2E+02 0.0068 20.5 13.0 12 124-135 47-58 (121)
351 KOG0161 Myosin class II heavy 23.7 1.1E+03 0.025 26.9 16.4 47 103-149 1098-1144(1930)
352 cd03401 Band_7_prohibitin Band 23.7 2.7E+02 0.0058 22.4 6.0 23 133-155 169-191 (196)
353 PRK10404 hypothetical protein; 23.6 3.2E+02 0.0069 20.5 9.9 12 128-139 14-25 (101)
354 KOG0933 Structural maintenance 23.5 8.5E+02 0.018 26.0 10.4 28 150-177 774-801 (1174)
355 PTZ00400 DnaK-type molecular c 23.5 7.3E+02 0.016 24.6 11.2 14 130-143 568-581 (663)
356 PF04277 OAD_gamma: Oxaloaceta 23.4 1.1E+02 0.0024 21.2 3.2 14 79-92 7-20 (79)
357 PF08285 DPM3: Dolichol-phosph 23.3 1.1E+02 0.0023 22.7 3.1 16 140-155 67-82 (91)
358 PRK05978 hypothetical protein; 23.1 1.8E+02 0.0038 23.5 4.7 50 52-107 75-124 (148)
359 PRK11176 lipid transporter ATP 23.0 6.6E+02 0.014 23.9 11.7 38 74-111 160-197 (582)
360 COG4178 ABC-type uncharacteriz 22.8 4E+02 0.0086 26.5 7.8 67 40-106 166-233 (604)
361 PRK14153 heat shock protein Gr 22.8 4.6E+02 0.01 22.0 10.5 24 160-183 62-85 (194)
362 PF06210 DUF1003: Protein of u 22.8 3.5E+02 0.0075 20.5 10.2 15 100-114 49-63 (108)
363 COG3105 Uncharacterized protei 22.7 4E+02 0.0086 21.2 12.4 80 78-164 2-82 (138)
364 PF06129 Chordopox_G3: Chordop 22.6 85 0.0018 24.1 2.6 22 84-105 5-26 (109)
365 TIGR02350 prok_dnaK chaperone 22.5 7.1E+02 0.015 24.1 10.5 14 130-143 525-538 (595)
366 TIGR03796 NHPM_micro_ABC1 NHPM 22.5 3E+02 0.0065 27.1 7.1 30 76-105 290-319 (710)
367 cd07623 BAR_SNX1_2 The Bin/Amp 22.5 4.7E+02 0.01 22.0 16.7 28 88-115 94-123 (224)
368 PRK06531 yajC preprotein trans 22.4 1.5E+02 0.0032 22.9 3.9 15 88-102 12-26 (113)
369 PF08598 Sds3: Sds3-like; Int 22.3 66 0.0014 26.5 2.1 65 124-188 44-108 (205)
370 KOG0995 Centromere-associated 22.1 7.7E+02 0.017 24.4 17.3 20 176-195 526-545 (581)
371 PF12777 MT: Microtubule-bindi 21.9 5.9E+02 0.013 22.9 13.6 16 137-152 29-44 (344)
372 KOG3654 Uncharacterized CH dom 21.9 5.7E+02 0.012 25.1 8.4 51 99-149 382-432 (708)
373 TIGR02204 MsbA_rel ABC transpo 21.8 6.9E+02 0.015 23.7 10.0 30 75-104 154-183 (576)
374 TIGR00383 corA magnesium Mg(2+ 21.7 1.7E+02 0.0036 25.6 4.7 18 52-69 260-277 (318)
375 CHL00094 dnaK heat shock prote 21.5 7.7E+02 0.017 24.1 10.7 14 130-143 529-542 (621)
376 PF04799 Fzo_mitofusin: fzo-li 21.4 2E+02 0.0042 23.9 4.7 37 80-117 43-79 (171)
377 COG1193 Mismatch repair ATPase 21.4 8.9E+02 0.019 24.8 13.1 29 152-180 554-582 (753)
378 PF10146 zf-C4H2: Zinc finger- 21.3 5.4E+02 0.012 22.2 14.9 19 161-179 65-83 (230)
379 TIGR01035 hemA glutamyl-tRNA r 21.2 6.6E+02 0.014 23.2 11.1 22 147-168 339-360 (417)
380 KOG3612 PHD Zn-finger protein 21.1 8.1E+02 0.017 24.2 9.6 53 121-173 462-514 (588)
381 COG3190 FliO Flagellar biogene 21.1 58 0.0013 26.0 1.5 24 80-103 30-53 (137)
382 PF00836 Stathmin: Stathmin fa 21.0 4.2E+02 0.0092 21.2 6.4 13 113-125 46-58 (140)
383 PRK10633 hypothetical protein; 21.0 1.6E+02 0.0035 21.3 3.6 30 72-101 37-70 (80)
384 COG2770 ResE FOG: HAMP domain 20.9 3.1E+02 0.0066 19.2 6.5 33 85-117 16-48 (83)
385 COG2274 SunT ABC-type bacterio 20.9 3.6E+02 0.0077 27.2 7.3 38 73-110 287-324 (709)
386 TIGR03024 arch_pef_cterm PEF-C 20.8 1.4E+02 0.0031 17.0 2.6 20 76-96 3-22 (26)
387 PF07889 DUF1664: Protein of u 20.7 4.2E+02 0.0091 20.8 8.4 11 87-97 29-39 (126)
388 PRK01371 sec-independent trans 20.6 3.8E+02 0.0083 21.4 6.0 8 74-81 1-8 (137)
389 PF08317 Spc7: Spc7 kinetochor 20.6 6.2E+02 0.013 22.6 17.6 54 99-152 146-199 (325)
390 PRK11829 biofilm formation reg 20.6 3.9E+02 0.0085 25.7 7.4 27 85-111 158-184 (660)
391 PF08269 Cache_2: Cache domain 20.6 1.3E+02 0.0029 21.3 3.3 23 105-127 3-25 (95)
392 PRK00083 frr ribosome recyclin 20.5 5E+02 0.011 21.5 11.5 33 162-194 150-182 (185)
393 PHA03399 pif3 per os infectivi 20.5 1.9E+02 0.0042 24.5 4.6 22 89-110 9-30 (200)
394 PF10183 ESSS: ESSS subunit of 20.5 1.1E+02 0.0024 23.0 2.8 25 78-102 58-82 (105)
395 PF07464 ApoLp-III: Apolipopho 20.3 3.3E+02 0.0072 22.0 5.8 83 119-202 34-116 (155)
396 PRK13895 conjugal transfer pro 20.2 4.7E+02 0.01 21.1 12.9 27 152-178 65-91 (144)
397 PRK03625 tatE twin arginine tr 20.1 2.3E+02 0.005 19.8 4.2 17 101-117 26-42 (67)
398 PF10961 DUF2763: Protein of u 20.1 88 0.0019 23.1 2.2 14 80-93 23-36 (91)
399 PRK10789 putative multidrug tr 20.1 6.7E+02 0.015 24.0 8.8 11 93-103 151-161 (569)
400 COG4651 RosB Kef-type K+ trans 20.0 2.3E+02 0.0049 26.2 5.1 57 53-109 159-220 (408)
401 KOG0579 Ste20-like serine/thre 20.0 9.8E+02 0.021 24.7 12.2 33 125-157 829-861 (1187)
No 1
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=99.98 E-value=1.1e-30 Score=211.73 Aligned_cols=142 Identities=37% Similarity=0.551 Sum_probs=139.5
Q ss_pred hcccCCccchHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133 71 KAALFDFNLTLPIIMVEFLVLMFALDKIYYSPLGNFMDERDNAIKEKLNSVKDTSEEVKQLEEQAAAVMRAARAEISAAL 150 (213)
Q Consensus 71 ~g~l~~~n~tl~~~lInFlIL~~iL~kfl~kpI~~~Ld~R~~~I~~~l~eAe~~~~ea~~~~~eae~~L~~Ar~ea~~Ii 150 (213)
.||+|+||+|++|+++||++|+|+|++|+|+|+.++|++|++.|.+++++|++.+.+++..+++|+.++.+|+.++.+|+
T Consensus 15 ~~~~~~~n~t~~~~~inFliL~~lL~k~l~~Pi~~~l~~R~~~I~~~l~~Ae~~~~ea~~~~~e~e~~L~~A~~ea~~ii 94 (156)
T CHL00118 15 AGGLFDFNATLPLMALQFLLLMVLLNIILYKPLLKVLDERKEYIRKNLTKASEILAKANELTKQYEQELSKARKEAQLEI 94 (156)
T ss_pred cCCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 028133 151 TKMKKETQLEVEQKLAVGRKKIEAELQEALANLERQKEDTIKSLDSQIAALSEEIVRKVLPV 212 (213)
Q Consensus 151 ~~Ak~eAe~e~e~il~~Ak~e~e~~~~~A~~~I~~e~~~a~~eL~~ei~~lA~~ia~KiL~~ 212 (213)
++++.+++.+++++++++++++++++++++.+|+.++.++..+|++++.++|.++++|||+.
T Consensus 95 ~~A~~~a~~~~~~~~~~A~~ea~~~~~~a~~~i~~ek~~a~~~l~~~v~~lA~~ia~kil~~ 156 (156)
T CHL00118 95 TQSQKEAKEIVENELKQAQKYIDSLLNEATKQLEAQKEKALKSLEEQVDTLSDQIEEKLLIK 156 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999974
No 2
>PRK07353 F0F1 ATP synthase subunit B'; Validated
Probab=99.97 E-value=4.3e-30 Score=203.85 Aligned_cols=139 Identities=30% Similarity=0.557 Sum_probs=137.6
Q ss_pred cCCccchHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133 74 LFDFNLTLPIIMVEFLVLMFALDKIYYSPLGNFMDERDNAIKEKLNSVKDTSEEVKQLEEQAAAVMRAARAEISAALTKM 153 (213)
Q Consensus 74 l~~~n~tl~~~lInFlIL~~iL~kfl~kpI~~~Ld~R~~~I~~~l~eAe~~~~ea~~~~~eae~~L~~Ar~ea~~Ii~~A 153 (213)
||+||+|++|++|||++|+|+|++|+|+||.++|++|++.|.++++++++.+.++++.+.+|+..+.+|+.++.+|++++
T Consensus 1 ~~~~~~t~~~~~i~flil~~ll~~~l~~pi~~~l~~R~~~I~~~l~~Ae~~~~ea~~~~~~~e~~L~~a~~ea~~i~~~a 80 (140)
T PRK07353 1 LFDFDATLPLMAVQFVLLTFILNALFYKPVGKVVEEREDYIRTNRAEAKERLAEAEKLEAQYEQQLASARKQAQAVIAEA 80 (140)
T ss_pred CcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 028133 154 KKETQLEVEQKLAVGRKKIEAELQEALANLERQKEDTIKSLDSQIAALSEEIVRKVLPV 212 (213)
Q Consensus 154 k~eAe~e~e~il~~Ak~e~e~~~~~A~~~I~~e~~~a~~eL~~ei~~lA~~ia~KiL~~ 212 (213)
+.+++.+++++++++++++++++++++.+|+.++.++..+|++++.++|.++++||||+
T Consensus 81 ~~~a~~~~~~~~~~a~~ea~~~~~~a~~~i~~e~~~a~~~l~~~v~~la~~~a~kll~~ 139 (140)
T PRK07353 81 EAEADKLAAEALAEAQAEAQASKEKARREIEQQKQAALAQLEQQVDALSRQILEKLLAA 139 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 99999999999999999999999999999999999999999999999999999999986
No 3
>PRK13455 F0F1 ATP synthase subunit B; Provisional
Probab=99.97 E-value=1.4e-29 Score=209.99 Aligned_cols=150 Identities=19% Similarity=0.274 Sum_probs=142.0
Q ss_pred cCchhhhhhhhhcccCCccchHHHHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133 60 FSPPSLAAEIEKAALFDFNLTLPIIMVEFLVLMFALDKIYYS-PLGNFMDERDNAIKEKLNSVKDTSEEVKQLEEQAAAV 138 (213)
Q Consensus 60 ~~~~a~A~e~~~g~l~~~n~tl~~~lInFlIL~~iL~kfl~k-pI~~~Ld~R~~~I~~~l~eAe~~~~ea~~~~~eae~~ 138 (213)
.+++++++ +||+|+||+|.||++|||+||+|+|++|+|+ ||.++|++|++.|.+++++|++.++++++.+++|+.+
T Consensus 11 ~~~~~~~~---~g~~~~~~~t~~~~~inflil~~iL~~f~~~~~v~~~L~~R~~~I~~~l~~Ae~~~~eA~~~l~e~e~~ 87 (184)
T PRK13455 11 AASPALAA---GGPFFSLSNTDFVVTLAFLLFIGILVYFKVPGMIGGMLDKRAEGIRSELEEARALREEAQTLLASYERK 87 (184)
T ss_pred ccchHhhc---CCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455553 5889999999999999999999999999765 5899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 028133 139 MRAARAEISAALTKMKKETQLEVEQKLAVGRKKIEAELQEALANLERQKEDTIKSLDSQIAALSEEIVRKVLPV 212 (213)
Q Consensus 139 L~~Ar~ea~~Ii~~Ak~eAe~e~e~il~~Ak~e~e~~~~~A~~~I~~e~~~a~~eL~~ei~~lA~~ia~KiL~~ 212 (213)
+.+|+.++++|+++++.+++.+.++++++++.++++++++++.+|+.+++++.++++.++.++|+++++|+|++
T Consensus 88 L~~A~~ea~~Ii~~A~~~a~~~~e~~~~~a~~ea~~~~~~A~~~I~~ek~~a~~~l~~~i~~lA~~~a~kil~~ 161 (184)
T PRK13455 88 QREVQEQADRIVAAAKDEAQAAAEQAKADLEASIARRLAAAEDQIASAEAAAVKAVRDRAVSVAVAAAADVIAK 161 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999986
No 4
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=99.97 E-value=2e-29 Score=207.38 Aligned_cols=148 Identities=21% Similarity=0.214 Sum_probs=141.3
Q ss_pred hhhhhhhhhcccCCccch-HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133 63 PSLAAEIEKAALFDFNLT-LPIIMVEFLVLMFALDKIYYSPLGNFMDERDNAIKEKLNSVKDTSEEVKQLEEQAAAVMRA 141 (213)
Q Consensus 63 ~a~A~e~~~g~l~~~n~t-l~~~lInFlIL~~iL~kfl~kpI~~~Ld~R~~~I~~~l~eAe~~~~ea~~~~~eae~~L~~ 141 (213)
.++|+| +||+|++||+ ++|++|||+||+|+|++|+|+||.++|++|++.|.+++++|++.+.++++.+++|+.+|.+
T Consensus 5 ~~~~~~--~~~~~~~~~~~~~~~iinflIl~~lL~~fl~kpI~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~~~~~~L~~ 82 (174)
T PRK07352 5 LLLATE--AEGGFGLNLNLLETNLINLAIVIGLLYYFGRGFLGKILEERREAILQALKEAEERLRQAAQALAEAQQKLAQ 82 (174)
T ss_pred HHHHHh--ccCCCCCchhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345655 5888999986 5579999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 028133 142 ARAEISAALTKMKKETQLEVEQKLAVGRKKIEAELQEALANLERQKEDTIKSLDSQIAALSEEIVRKVLPV 212 (213)
Q Consensus 142 Ar~ea~~Ii~~Ak~eAe~e~e~il~~Ak~e~e~~~~~A~~~I~~e~~~a~~eL~~ei~~lA~~ia~KiL~~ 212 (213)
|+.++++|+++++.+++.++++++++|++++++++++++.+|+.++.++..+|+.++.++|+++++|+|++
T Consensus 83 a~~ea~~ii~~a~~~a~~~~~~~~~~A~~e~~~~~~~a~~~i~~e~~~a~~~l~~qi~~la~~~A~kil~~ 153 (174)
T PRK07352 83 AQQEAERIRADAKARAEAIRAEIEKQAIEDMARLKQTAAADLSAEQERVIAQLRREAAELAIAKAESQLPG 153 (174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999975
No 5
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=99.97 E-value=1.7e-29 Score=207.80 Aligned_cols=142 Identities=23% Similarity=0.339 Sum_probs=138.8
Q ss_pred hcccCCccc-hHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133 71 KAALFDFNL-TLPIIMVEFLVLMFALDKIYYSPLGNFMDERDNAIKEKLNSVKDTSEEVKQLEEQAAAVMRAARAEISAA 149 (213)
Q Consensus 71 ~g~l~~~n~-tl~~~lInFlIL~~iL~kfl~kpI~~~Ld~R~~~I~~~l~eAe~~~~ea~~~~~eae~~L~~Ar~ea~~I 149 (213)
+.++|+||| ++||++|||+||+|+|++|+|+||.++|++|+++|.+++++|++.+.++++.+++|+.++.+++.++.+|
T Consensus 8 ~~~~l~~~~~~~~~~~i~Flil~~iL~~~~~kpi~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~~i 87 (173)
T PRK13460 8 GLSLLDVNPGLVVWTLVTFLVVVLVLKKFAWDVILKALDERASGVQNDINKASELRLEAEALLKDYEARLNSAKDEANAI 87 (173)
T ss_pred CCCccCCcHhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 458999997 7889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 028133 150 LTKMKKETQLEVEQKLAVGRKKIEAELQEALANLERQKEDTIKSLDSQIAALSEEIVRKVLPV 212 (213)
Q Consensus 150 i~~Ak~eAe~e~e~il~~Ak~e~e~~~~~A~~~I~~e~~~a~~eL~~ei~~lA~~ia~KiL~~ 212 (213)
+++++.+++.++++++++|++++++++++++.+|+.+++++..+|+.++.++|+++++|+|++
T Consensus 88 i~~A~~ea~~~~~~~~~~A~~ea~~~~~~a~~~ie~e~~~a~~el~~ei~~lA~~~a~kil~~ 150 (173)
T PRK13460 88 VAEAKSDALKLKNKLLEETNNEVKAQKDQAVKEIELAKGKALSQLQNQIVEMTITIASKVLEK 150 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999975
No 6
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=99.97 E-value=2.3e-29 Score=207.29 Aligned_cols=142 Identities=16% Similarity=0.290 Sum_probs=138.6
Q ss_pred hcccCCccc-hHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133 71 KAALFDFNL-TLPIIMVEFLVLMFALDKIYYSPLGNFMDERDNAIKEKLNSVKDTSEEVKQLEEQAAAVMRAARAEISAA 149 (213)
Q Consensus 71 ~g~l~~~n~-tl~~~lInFlIL~~iL~kfl~kpI~~~Ld~R~~~I~~~l~eAe~~~~ea~~~~~eae~~L~~Ar~ea~~I 149 (213)
.||+|++|| ++||++|||+||+|+|++|+|+||.++|++|++.|.+++++|++.+.++++.+++|+.++.+++.++++|
T Consensus 10 ~~~~~~~~~~~~~~~~i~Flil~~lL~~~l~kpi~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~L~~a~~ea~~i 89 (175)
T PRK14472 10 SGGLLSPNPGLIFWTAVTFVIVLLILKKIAWGPILSALEEREKGIQSSIDRAHSAKDEAEAILRKNRELLAKADAEADKI 89 (175)
T ss_pred cCCccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478999997 6779999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 028133 150 LTKMKKETQLEVEQKLAVGRKKIEAELQEALANLERQKEDTIKSLDSQIAALSEEIVRKVLPV 212 (213)
Q Consensus 150 i~~Ak~eAe~e~e~il~~Ak~e~e~~~~~A~~~I~~e~~~a~~eL~~ei~~lA~~ia~KiL~~ 212 (213)
+++++.+++.++++++++|+.+++++++.++.+|+.+++++..+|++++.++|+++++|+|++
T Consensus 90 i~~A~~~a~~~~~~~~~~A~~ea~~~~~~a~~~I~~e~~~a~~~l~~~i~~lA~~~a~kil~~ 152 (175)
T PRK14472 90 IREGKEYAEKLRAEITEKAHTEAKKMIASAKEEIEQEKRRALDVLRNEVADLAVKGAEKIIRT 152 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999975
No 7
>PRK14473 F0F1 ATP synthase subunit B; Provisional
Probab=99.97 E-value=3.5e-29 Score=203.97 Aligned_cols=140 Identities=26% Similarity=0.404 Sum_probs=136.4
Q ss_pred ccCCccc-hHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133 73 ALFDFNL-TLPIIMVEFLVLMFALDKIYYSPLGNFMDERDNAIKEKLNSVKDTSEEVKQLEEQAAAVMRAARAEISAALT 151 (213)
Q Consensus 73 ~l~~~n~-tl~~~lInFlIL~~iL~kfl~kpI~~~Ld~R~~~I~~~l~eAe~~~~ea~~~~~eae~~L~~Ar~ea~~Ii~ 151 (213)
++|++|| +++|++|||+||+|+|++|+|+||.++|++|++.|.+++++|++.++++++.+.+|+..+.+|+.+++.|++
T Consensus 2 ~~~~~~~~~~~~~~inflil~~lL~~fl~kpi~~~l~~R~~~I~~~l~~Ae~~~~ea~~~~~e~e~~l~~A~~ea~~ii~ 81 (164)
T PRK14473 2 EKLGINLGLLIAQLINFLLLIFLLRTFLYRPVLNLLNERTRRIEESLRDAEKVREQLANAKRDYEAELAKARQEAAKIVA 81 (164)
T ss_pred CcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3789996 567899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 028133 152 KMKKETQLEVEQKLAVGRKKIEAELQEALANLERQKEDTIKSLDSQIAALSEEIVRKVLPV 212 (213)
Q Consensus 152 ~Ak~eAe~e~e~il~~Ak~e~e~~~~~A~~~I~~e~~~a~~eL~~ei~~lA~~ia~KiL~~ 212 (213)
+++.+++.++++++++|+.+++++++.++.+|+.++..+..+|++++.++|+.+++|+|++
T Consensus 82 ~A~~~a~~~~~~~l~~A~~ea~~~~~~a~~~I~~ek~~a~~~L~~~i~~la~~~a~kil~~ 142 (164)
T PRK14473 82 QAQERARAQEAEIIAQARREAEKIKEEARAQAEQERQRMLSELKSQIADLVTLTASRVLGA 142 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999999986
No 8
>PRK13461 F0F1 ATP synthase subunit B; Provisional
Probab=99.97 E-value=4.8e-29 Score=202.22 Aligned_cols=138 Identities=16% Similarity=0.340 Sum_probs=135.5
Q ss_pred CCccc-hHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133 75 FDFNL-TLPIIMVEFLVLMFALDKIYYSPLGNFMDERDNAIKEKLNSVKDTSEEVKQLEEQAAAVMRAARAEISAALTKM 153 (213)
Q Consensus 75 ~~~n~-tl~~~lInFlIL~~iL~kfl~kpI~~~Ld~R~~~I~~~l~eAe~~~~ea~~~~~eae~~L~~Ar~ea~~Ii~~A 153 (213)
|++|| |++|++|||+||+|+|++|+|+||.++|++|++.|.+++++|++.+.++++.+++|+..+.+|+.++.+|++++
T Consensus 1 M~~~~~~~~~~~inF~il~~iL~~f~~kpi~~~l~~R~~~I~~~l~~A~~~~~eA~~~~~e~~~~l~~a~~ea~~ii~~a 80 (159)
T PRK13461 1 MEINIPTIIATIINFIILLLILKHFFFDKIKAVIDSRQSEIDNKIEKADEDQKKARELKLKNERELKNAKEEGKKIVEEY 80 (159)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67887 78899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 028133 154 KKETQLEVEQKLAVGRKKIEAELQEALANLERQKEDTIKSLDSQIAALSEEIVRKVLPV 212 (213)
Q Consensus 154 k~eAe~e~e~il~~Ak~e~e~~~~~A~~~I~~e~~~a~~eL~~ei~~lA~~ia~KiL~~ 212 (213)
+.+++.++++++++|+.++++++++++.+|+.++.++..+|++++.++|+.+++|+|++
T Consensus 81 ~~~a~~~~~~i~~~A~~ea~~~~~~a~~~i~~e~~~a~~~l~~ei~~lA~~~a~kil~~ 139 (159)
T PRK13461 81 KSKAENVYEEIVKEAHEEADLIIERAKLEAQREKEKAEYEIKNQAVDLAVLLSSKALEE 139 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999985
No 9
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=99.97 E-value=9.7e-29 Score=205.12 Aligned_cols=143 Identities=18% Similarity=0.196 Sum_probs=138.8
Q ss_pred hhcccCCccchHHH-HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133 70 EKAALFDFNLTLPI-IMVEFLVLMFALDKIYYSPLGNFMDERDNAIKEKLNSVKDTSEEVKQLEEQAAAVMRAARAEISA 148 (213)
Q Consensus 70 ~~g~l~~~n~tl~~-~lInFlIL~~iL~kfl~kpI~~~Ld~R~~~I~~~l~eAe~~~~ea~~~~~eae~~L~~Ar~ea~~ 148 (213)
+.||+||||+++++ ++|||+||+|+|+||+|+||.++|++|++.|.+++++|++.+.++++.+.+|+.++.+|+.++++
T Consensus 15 ~~~~~f~~n~~~~~~~~Inflill~lL~~fl~kPI~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~L~~A~~ea~~ 94 (184)
T CHL00019 15 PSAGSFGFNTDILETNLINLSVVLGVLIYFGKGVLSDLLDNRKQTILNTIRNSEERREEAIEKLEKARARLRQAELEADE 94 (184)
T ss_pred cccCccCCcchHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45779999998775 79999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 028133 149 ALTKMKKETQLEVEQKLAVGRKKIEAELQEALANLERQKEDTIKSLDSQIAALSEEIVRKVLPV 212 (213)
Q Consensus 149 Ii~~Ak~eAe~e~e~il~~Ak~e~e~~~~~A~~~I~~e~~~a~~eL~~ei~~lA~~ia~KiL~~ 212 (213)
|+++++.+++.++++++++|+.++++++++|+.+|+.++.++..++++++.++|+++|+|+|++
T Consensus 95 ii~~A~~~ae~~~~~il~~A~~ea~~~~~~a~~~ie~Ek~~a~~~l~~ei~~lav~~A~kil~~ 158 (184)
T CHL00019 95 IRVNGYSEIEREKENLINQAKEDLERLENYKNETIRFEQQRAINQVRQQVFQLALQRALGTLNS 158 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999999999975
No 10
>PRK05759 F0F1 ATP synthase subunit B; Validated
Probab=99.97 E-value=1.3e-28 Score=198.41 Aligned_cols=138 Identities=22% Similarity=0.328 Sum_probs=136.5
Q ss_pred CCccchHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133 75 FDFNLTLPIIMVEFLVLMFALDKIYYSPLGNFMDERDNAIKEKLNSVKDTSEEVKQLEEQAAAVMRAARAEISAALTKMK 154 (213)
Q Consensus 75 ~~~n~tl~~~lInFlIL~~iL~kfl~kpI~~~Ld~R~~~I~~~l~eAe~~~~ea~~~~~eae~~L~~Ar~ea~~Ii~~Ak 154 (213)
|+||+|+||++|||+||+|+|++|+|+||.++|++|++.|.+.++++++.+.++++.+++|+.++.+|+.++.+|+++++
T Consensus 1 ~~~~~~~~~~~i~Flil~~il~~~~~~pi~~~l~~R~~~I~~~l~~a~~~~~~a~~~~~e~~~~l~~a~~ea~~i~~~a~ 80 (156)
T PRK05759 1 MNLNGTLIGQLIAFLILVWFIMKFVWPPIMKALEERQKKIADGLAAAERAKKELELAQAKYEAQLAEARAEAAEIIEQAK 80 (156)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 028133 155 KETQLEVEQKLAVGRKKIEAELQEALANLERQKEDTIKSLDSQIAALSEEIVRKVLPV 212 (213)
Q Consensus 155 ~eAe~e~e~il~~Ak~e~e~~~~~A~~~I~~e~~~a~~eL~~ei~~lA~~ia~KiL~~ 212 (213)
.+++.++++++.+++.+++++++.++.+|+.++..+..++++++.++|+.+++|+|++
T Consensus 81 ~ea~~~~~~~~~~a~~ea~~~~~~a~~~i~~e~~~a~~~l~~~~~~lA~~~a~k~l~~ 138 (156)
T PRK05759 81 KRAAQIIEEAKAEAEAEAARIKAQAQAEIEQERKRAREELRKQVADLAVAGAEKILGR 138 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999985
No 11
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=99.96 E-value=2e-28 Score=203.04 Aligned_cols=145 Identities=16% Similarity=0.296 Sum_probs=139.1
Q ss_pred hhhhcccCCccc-----hHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133 68 EIEKAALFDFNL-----TLPIIMVEFLVLMFALDKIYYSPLGNFMDERDNAIKEKLNSVKDTSEEVKQLEEQAAAVMRAA 142 (213)
Q Consensus 68 e~~~g~l~~~n~-----tl~~~lInFlIL~~iL~kfl~kpI~~~Ld~R~~~I~~~l~eAe~~~~ea~~~~~eae~~L~~A 142 (213)
+++.|||++||+ ++||++|+|+||+|+|+||+||||.++|++|++.|.++++++++.+.++++++++|+..|.++
T Consensus 16 ~~~~~gmp~ld~~t~~~q~~~~lI~F~iL~~ll~k~l~~PI~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~eye~~L~~A 95 (181)
T PRK13454 16 AASAPGMPQLDFSTFPNQIFWLLVTLVAIYFVLTRVALPRIGAVLAERQGTITNDLAAAEELKQKAVEAEKAYNKALADA 95 (181)
T ss_pred ccCCCCCCCCcHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788988887 466889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 028133 143 RAEISAALTKMKKETQLEVEQKLAVGRKKIEAELQEALANLERQKEDTIKSLDSQIAALSEEIVRKVLPV 212 (213)
Q Consensus 143 r~ea~~Ii~~Ak~eAe~e~e~il~~Ak~e~e~~~~~A~~~I~~e~~~a~~eL~~ei~~lA~~ia~KiL~~ 212 (213)
|.++.+|+++++.+++.+.++++++++.++++++++++.+|+.++.++.++|++.+.++|..+++||+++
T Consensus 96 r~EA~~ii~~A~~ea~~~~~~~~~~A~~e~~~~~aea~~~I~~~k~~a~~~l~~~a~~lA~~i~~kL~~~ 165 (181)
T PRK13454 96 RAEAQRIVAETRAEIQAELDVAIAKADAEIAAKAAESEKRIAEIRAGALESVEEVAKDTAEALVAALGGK 165 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999763
No 12
>PRK06568 F0F1 ATP synthase subunit B; Validated
Probab=99.96 E-value=4.2e-28 Score=196.11 Aligned_cols=136 Identities=16% Similarity=0.196 Sum_probs=132.2
Q ss_pred CCccchHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133 75 FDFNLTLPIIMVEFLVLMFALDKIYYSPLGNFMDERDNAIKEKLNSVKDTSEEVKQLEEQAAAVMRAARAEISAALTKMK 154 (213)
Q Consensus 75 ~~~n~tl~~~lInFlIL~~iL~kfl~kpI~~~Ld~R~~~I~~~l~eAe~~~~ea~~~~~eae~~L~~Ar~ea~~Ii~~Ak 154 (213)
|+|.-++||++|+|+||+|+|++|+|+||.++|++|.+.|.+++++|++.++++++++++|+..|.+|+.++++|+++|+
T Consensus 1 ~~~~~~~fwq~I~FlIll~ll~kfawkPI~~~LeeR~~~I~~~Ld~Ae~~r~eA~~l~~e~e~~L~~Ar~EA~~Ii~~A~ 80 (154)
T PRK06568 1 MNFLDESFWLAVSFVIFVYLIYRPAKKAILNSLDAKILEVQEKVLKAEKLKEDAALLFEQTNAQIKKLETLRSQMIEESN 80 (154)
T ss_pred CCchHhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 028133 155 KETQLEVEQKLAVGRKKIEAELQEALANLERQKEDTIKSLDSQIAALSEEIVRKVL 210 (213)
Q Consensus 155 ~eAe~e~e~il~~Ak~e~e~~~~~A~~~I~~e~~~a~~eL~~ei~~lA~~ia~KiL 210 (213)
.+++...++++.+++.++++++++|+.+|++++.++..+|+++++++|+.+++|..
T Consensus 81 ~~a~~~~~ea~~eA~~ea~r~~~~A~~~Ie~Ek~~Al~elr~eva~Lav~iAsk~~ 136 (154)
T PRK06568 81 EVTKKIIQEKTKEIEEFLEHKKSDAIQLIQNQKSTASKELQDEFCDEVIKLVSEYF 136 (154)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999864
No 13
>PRK14471 F0F1 ATP synthase subunit B; Provisional
Probab=99.96 E-value=3.5e-28 Score=198.12 Aligned_cols=138 Identities=24% Similarity=0.381 Sum_probs=133.7
Q ss_pred CCccc-hHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133 75 FDFNL-TLPIIMVEFLVLMFALDKIYYSPLGNFMDERDNAIKEKLNSVKDTSEEVKQLEEQAAAVMRAARAEISAALTKM 153 (213)
Q Consensus 75 ~~~n~-tl~~~lInFlIL~~iL~kfl~kpI~~~Ld~R~~~I~~~l~eAe~~~~ea~~~~~eae~~L~~Ar~ea~~Ii~~A 153 (213)
+++|| ++||++|||+||+|+|++|+|+||.++|++|++.|.+++++|++.+.++++..++|+..+.+|+.++++|++++
T Consensus 4 l~~~~~~~~~~~i~Flil~~ll~~~l~~pi~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~e~~l~~A~~ea~~ii~~A 83 (164)
T PRK14471 4 LTPDFGLFFWQTILFLILLLLLAKFAWKPILGAVKEREDSIKNALASAEEARKEMQNLQADNERLLKEARAERDAILKEA 83 (164)
T ss_pred ccCcHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444 78899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 028133 154 KKETQLEVEQKLAVGRKKIEAELQEALANLERQKEDTIKSLDSQIAALSEEIVRKVLPV 212 (213)
Q Consensus 154 k~eAe~e~e~il~~Ak~e~e~~~~~A~~~I~~e~~~a~~eL~~ei~~lA~~ia~KiL~~ 212 (213)
+.+++..+++++++|+.++++++++++.+|+.++.++..+|++++.++|+.+++|+|++
T Consensus 84 ~~~a~~~~~~~~~~A~~ea~~~~~~a~~~i~~ek~~a~~~l~~~i~~la~~~a~kil~~ 142 (164)
T PRK14471 84 REIKEKMIADAKEEAQVEGDKMIEQAKASIESEKNAAMAEIKNQVANLSVEIAEKVLRK 142 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999975
No 14
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=99.96 E-value=3.7e-28 Score=199.93 Aligned_cols=137 Identities=23% Similarity=0.409 Sum_probs=133.5
Q ss_pred Cccc-hHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133 76 DFNL-TLPIIMVEFLVLMFALDKIYYSPLGNFMDERDNAIKEKLNSVKDTSEEVKQLEEQAAAVMRAARAEISAALTKMK 154 (213)
Q Consensus 76 ~~n~-tl~~~lInFlIL~~iL~kfl~kpI~~~Ld~R~~~I~~~l~eAe~~~~ea~~~~~eae~~L~~Ar~ea~~Ii~~Ak 154 (213)
++|| |+||++|||+||+|+|++|+|+||.++|++|++.|.+++++|++.+++++..+++|+.++.+++.++++|+++++
T Consensus 15 ~~~~~t~~~~iInFliL~~lL~~~l~~pi~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~~ii~~a~ 94 (173)
T PRK13453 15 GVEWGTVIVTVLTFIVLLALLKKFAWGPLKDVMDKRERDINRDIDDAEQAKLNAQKLEEENKQKLKETQEEVQKILEDAK 94 (173)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455 788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 028133 155 KETQLEVEQKLAVGRKKIEAELQEALANLERQKEDTIKSLDSQIAALSEEIVRKVLPV 212 (213)
Q Consensus 155 ~eAe~e~e~il~~Ak~e~e~~~~~A~~~I~~e~~~a~~eL~~ei~~lA~~ia~KiL~~ 212 (213)
.+++.++++++++|+.++++++++++.+|+.++.++..+|++++.++|+.+++|+|++
T Consensus 95 ~~a~~~~~~~~~~A~~ea~~~~~~A~~~I~~ek~~a~~~l~~ei~~lA~~~a~kll~~ 152 (173)
T PRK13453 95 VQARQQQEQIIHEANVRANGMIETAQSEINSQKERAIADINNQVSELSVLIASKVLRK 152 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999975
No 15
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=99.96 E-value=1.4e-27 Score=201.45 Aligned_cols=134 Identities=16% Similarity=0.249 Sum_probs=131.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133 79 LTLPIIMVEFLVLMFALDKIYYSPLGNFMDERDNAIKEKLNSVKDTSEEVKQLEEQAAAVMRAARAEISAALTKMKKETQ 158 (213)
Q Consensus 79 ~tl~~~lInFlIL~~iL~kfl~kpI~~~Ld~R~~~I~~~l~eAe~~~~ea~~~~~eae~~L~~Ar~ea~~Ii~~Ak~eAe 158 (213)
+++||++|+|+||||+|+||+||||.++|++|+++|.++++++++.+.++++++++|+..|.+||.++++|+++++.+++
T Consensus 54 ~~l~w~~I~FliL~~lL~k~~~~pI~~vLe~R~~~I~~~L~~Ae~~k~eAe~~~~~ye~~L~~Ar~eA~~Ii~~Ar~ea~ 133 (204)
T PRK09174 54 SQLLWLAITFGLFYLFMSRVILPRIGGIIETRRDRIAQDLDQAARLKQEADAAVAAYEQELAQARAKAHSIAQAAREAAK 133 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 028133 159 LEVEQKLAVGRKKIEAELQEALANLERQKEDTIKSLDSQIAALSEEIVRKVLPV 212 (213)
Q Consensus 159 ~e~e~il~~Ak~e~e~~~~~A~~~I~~e~~~a~~eL~~ei~~lA~~ia~KiL~~ 212 (213)
.+.++++.+++.++++++++++.+|+.++.++..+|++.+.++|..+++|+|+.
T Consensus 134 ~~~e~~~~~a~~ea~~~l~~Ae~~I~~ek~~A~~el~~~a~e~A~~I~~Kllg~ 187 (204)
T PRK09174 134 AKAEAERAAIEASLEKKLKEAEARIAAIKAKAMADVGSIAEETAAAIVEQLIGG 187 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 999999999999999999999999999999999999999999999999999985
No 16
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=99.96 E-value=2.6e-27 Score=199.92 Aligned_cols=141 Identities=14% Similarity=0.229 Sum_probs=134.8
Q ss_pred cccCCccchHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133 72 AALFDFNLTLPIIMVEFLVLMFALDKIYYSPLGNFMDERDNAIKEKLNSVKDTSEEVKQLEEQAAAVMRAARAEISAALT 151 (213)
Q Consensus 72 g~l~~~n~tl~~~lInFlIL~~iL~kfl~kpI~~~Ld~R~~~I~~~l~eAe~~~~ea~~~~~eae~~L~~Ar~ea~~Ii~ 151 (213)
+++|+-.|+++|++|||+||+|+|++|+|+|+.++|++|++.|.+++++|++.++++++.+++|+.++.+|+.++++|++
T Consensus 42 ~~~~~~~~~~i~qlInFlIlv~lL~k~l~kPi~~~L~~R~~~I~~~L~~Ae~~~~eA~~~l~e~e~~L~~A~~eA~~Ii~ 121 (205)
T PRK06231 42 NELFPNFWVFIAHLIAFSILLLLGIFLFWKPTQRFLNKRKELIEAEINQANELKQQAQQLLENAKQRHENALAQAKEIID 121 (205)
T ss_pred HHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444345788899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 028133 152 KMKKETQLEVEQKLAVGRKKIEAELQEALANLERQKEDTIKSLDSQIAALSEEIVRKVLPV 212 (213)
Q Consensus 152 ~Ak~eAe~e~e~il~~Ak~e~e~~~~~A~~~I~~e~~~a~~eL~~ei~~lA~~ia~KiL~~ 212 (213)
+++.+++.++++++++|+.++++++++++.+|+.+++++..+|++++.++|+++++|+|++
T Consensus 122 ~A~~eAe~~~e~i~~~A~~eae~ii~~A~~~Ie~Ek~~a~~~Lk~ei~~lAv~iA~kiL~k 182 (205)
T PRK06231 122 QANYEALQLKSELEKEANRQANLIIFQARQEIEKERRELKEQLQKESVELAMLAAEELIKK 182 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999999975
No 17
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=99.96 E-value=6.5e-27 Score=186.88 Aligned_cols=137 Identities=28% Similarity=0.448 Sum_probs=133.4
Q ss_pred cCCccch-HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133 74 LFDFNLT-LPIIMVEFLVLMFALDKIYYSPLGNFMDERDNAIKEKLNSVKDTSEEVKQLEEQAAAVMRAARAEISAALTK 152 (213)
Q Consensus 74 l~~~n~t-l~~~lInFlIL~~iL~kfl~kpI~~~Ld~R~~~I~~~l~eAe~~~~ea~~~~~eae~~L~~Ar~ea~~Ii~~ 152 (213)
|+++||+ ++|++|||+||+|+|++|+||||.++|++|++.|.+++++|++.+++++...++|+..+.+||.++..++++
T Consensus 2 mi~l~~~~~~~qli~Flil~~~l~kfl~kPi~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~e~~l~~Ar~eA~~~~~~ 81 (141)
T PRK08476 2 MLDVNPYLMLATFVVFLLLIVILNSWLYKPLLKFMDNRNASIKNDLEKVKTNSSDVSEIEHEIETILKNAREEANKIRQK 81 (141)
T ss_pred cCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6789975 688999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 028133 153 MKKETQLEVEQKLAVGRKKIEAELQEALANLERQKEDTIKSLDSQIAALSEEIVRKVL 210 (213)
Q Consensus 153 Ak~eAe~e~e~il~~Ak~e~e~~~~~A~~~I~~e~~~a~~eL~~ei~~lA~~ia~KiL 210 (213)
++.+|+.+.++++++++.+++++++.+..+++.++.++..+|+.++.+++.++..|+-
T Consensus 82 a~~~A~~ea~~~~~~A~~~~~~~~~~a~~~l~~e~~~~~~~l~~qv~~~~~~~~~~~~ 139 (141)
T PRK08476 82 AIAKAKEEAEKKIEAKKAELESKYEAFAKQLANQKQELKEQLLSQMPEFKEALNAKLS 139 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999999999999874
No 18
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=99.96 E-value=3.4e-27 Score=204.68 Aligned_cols=138 Identities=20% Similarity=0.343 Sum_probs=134.6
Q ss_pred CCccc-hHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133 75 FDFNL-TLPIIMVEFLVLMFALDKIYYSPLGNFMDERDNAIKEKLNSVKDTSEEVKQLEEQAAAVMRAARAEISAALTKM 153 (213)
Q Consensus 75 ~~~n~-tl~~~lInFlIL~~iL~kfl~kpI~~~Ld~R~~~I~~~l~eAe~~~~ea~~~~~eae~~L~~Ar~ea~~Ii~~A 153 (213)
|.+|| |++|++|||+||+|+|++|+|+||.++|++|+++|.+.+++|++.+.++++.+++|+.++.+++.++++|++++
T Consensus 1 M~id~~t~~~qiInFlILv~lL~~fl~kPi~~~l~eR~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~~ii~~A 80 (250)
T PRK14474 1 MLIDWFTVVAQIINFLILVYLLRRFLYKPIIQVMKKRQQRIANRWQDAEQRQQEAGQEAERYRQKQQSLEQQRASFMAQA 80 (250)
T ss_pred CcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56775 78899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 028133 154 KKETQLEVEQKLAVGRKKIEAELQEALANLERQKEDTIKSLDSQIAALSEEIVRKVLPV 212 (213)
Q Consensus 154 k~eAe~e~e~il~~Ak~e~e~~~~~A~~~I~~e~~~a~~eL~~ei~~lA~~ia~KiL~~ 212 (213)
+.+++.++++++++|++++++++++++.+++.+++++..+|++++.++++++++|+|++
T Consensus 81 ~~eA~~~~~~il~~A~~ea~~~~~~a~~~ie~Ek~~a~~~L~~~v~~la~~~A~kiL~~ 139 (250)
T PRK14474 81 QEAADEQRQHLLNEAREDVATARDEWLEQLEREKQEFFKALQQQTGQQMVKIIRAALAD 139 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999975
No 19
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=99.96 E-value=3.8e-27 Score=203.71 Aligned_cols=138 Identities=23% Similarity=0.305 Sum_probs=135.0
Q ss_pred CCccc-hHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133 75 FDFNL-TLPIIMVEFLVLMFALDKIYYSPLGNFMDERDNAIKEKLNSVKDTSEEVKQLEEQAAAVMRAARAEISAALTKM 153 (213)
Q Consensus 75 ~~~n~-tl~~~lInFlIL~~iL~kfl~kpI~~~Ld~R~~~I~~~l~eAe~~~~ea~~~~~eae~~L~~Ar~ea~~Ii~~A 153 (213)
|++|| |++|++|||+||+|+|++|+|+||.++|++|++.|.+.+++|++.+.++++.+++|+.++.+|+.++.+|++++
T Consensus 1 M~id~~t~~~qiInFlil~~lL~kfl~kPi~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~~i~~~A 80 (246)
T TIGR03321 1 MLIDWFTVIAQLINFLILVWLLKRFLYRPILDAMDAREKKIAGELADADTKKREAEQERREYEEKNEELDQQREVLLTKA 80 (246)
T ss_pred CcCcHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57886 78899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 028133 154 KKETQLEVEQKLAVGRKKIEAELQEALANLERQKEDTIKSLDSQIAALSEEIVRKVLPV 212 (213)
Q Consensus 154 k~eAe~e~e~il~~Ak~e~e~~~~~A~~~I~~e~~~a~~eL~~ei~~lA~~ia~KiL~~ 212 (213)
+.+++.++++++++|+.++++++++++.+|+.++.++..++++++.++|+++|+|+|++
T Consensus 81 ~~eA~~~~~~i~~~A~~ea~~~~~~a~~~ie~E~~~a~~~l~~ei~~la~~~A~kil~~ 139 (246)
T TIGR03321 81 KEEAQAERQRLLDEAREEADEIREKWQEALRREQAALSDELRRRTGAEVFAIARKVLTD 139 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999975
No 20
>PRK14475 F0F1 ATP synthase subunit B; Provisional
Probab=99.95 E-value=1e-26 Score=190.37 Aligned_cols=140 Identities=15% Similarity=0.183 Sum_probs=135.2
Q ss_pred ccCCccchHHHHHHHHHHHHHHH--HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133 73 ALFDFNLTLPIIMVEFLVLMFAL--DKIYYSPLGNFMDERDNAIKEKLNSVKDTSEEVKQLEEQAAAVMRAARAEISAAL 150 (213)
Q Consensus 73 ~l~~~n~tl~~~lInFlIL~~iL--~kfl~kpI~~~Ld~R~~~I~~~l~eAe~~~~ea~~~~~eae~~L~~Ar~ea~~Ii 150 (213)
..|+++.++||++|||+|++++| .+|+|+||.++|++|++.|.+++++|++.+.++++.+.+|+..|.+|+.++.+|+
T Consensus 3 ~~~~~~~~~~w~~i~f~il~~iL~~~k~l~~pi~~~le~R~~~I~~~l~~Ae~~k~eAe~~~~~~e~~L~~A~~ea~~Ii 82 (167)
T PRK14475 3 SFFNLSNPEFWVGAGLLIFFGILIALKVLPKALAGALDAYAAKIQAELDEAQRLREEAQALLADVKAEREEAERQAAAML 82 (167)
T ss_pred CCCCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35778889999999999999977 5889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 028133 151 TKMKKETQLEVEQKLAVGRKKIEAELQEALANLERQKEDTIKSLDSQIAALSEEIVRKVLPV 212 (213)
Q Consensus 151 ~~Ak~eAe~e~e~il~~Ak~e~e~~~~~A~~~I~~e~~~a~~eL~~ei~~lA~~ia~KiL~~ 212 (213)
++++.+++.+.++++++++++++++++.|+.+|+.++.++..++++++.++|+++|+|+|++
T Consensus 83 ~~A~~~a~~~~~~~~~~A~~ea~~~~~~A~~~I~~e~~~a~~el~~e~~~lAv~~A~kil~~ 144 (167)
T PRK14475 83 AAAKADARRMEAEAKEKLEEQIKRRAEMAERKIAQAEAQAAADVKAAAVDLAAQAAETVLAA 144 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999975
No 21
>COG0711 AtpF F0F1-type ATP synthase, subunit b [Energy production and conversion]
Probab=99.95 E-value=1.6e-26 Score=188.39 Aligned_cols=139 Identities=26% Similarity=0.388 Sum_probs=135.4
Q ss_pred cCCccch-HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133 74 LFDFNLT-LPIIMVEFLVLMFALDKIYYSPLGNFMDERDNAIKEKLNSVKDTSEEVKQLEEQAAAVMRAARAEISAALTK 152 (213)
Q Consensus 74 l~~~n~t-l~~~lInFlIL~~iL~kfl~kpI~~~Ld~R~~~I~~~l~eAe~~~~ea~~~~~eae~~L~~Ar~ea~~Ii~~ 152 (213)
+|+++++ +||++++|++|+|++++|+|||+.++|++|+++|.+++++|++.+.+++.+.++|++.+.+||.+++.|+++
T Consensus 1 ~~~~~~~~~~~~~i~F~ill~ll~~~~~~pi~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~~~~~~l~~Ar~~a~~Ii~~ 80 (161)
T COG0711 1 GMNFNDTNILWQLIAFVILLWLLKKFVWKPILKALDERQAKIADDLAEAERLKEEAQALLAEYEQELEEAREQASEIIEQ 80 (161)
T ss_pred CCccchhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3677888 999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 028133 153 MKKETQLEVEQKLAVGRKKIEAELQEALANLERQKEDTIKSLDSQIAALSEEIVRKVLPV 212 (213)
Q Consensus 153 Ak~eAe~e~e~il~~Ak~e~e~~~~~A~~~I~~e~~~a~~eL~~ei~~lA~~ia~KiL~~ 212 (213)
|+.+++...++++.+++.+.++++..+..+|+.++.++..+|+.++.++++.+++++++.
T Consensus 81 A~~~a~~~~~e~~~~a~~e~~r~~~~a~~~I~~e~~~a~~~l~~~~~~la~~~aekll~~ 140 (161)
T COG0711 81 AKKEAEQIAEEIKAEAEEELERIKEAAEAEIEAEKERALEELRAEVAELAVAIAEKLLGK 140 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999998863
No 22
>PRK08475 F0F1 ATP synthase subunit B; Validated
Probab=99.95 E-value=4.4e-26 Score=186.81 Aligned_cols=131 Identities=18% Similarity=0.203 Sum_probs=126.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133 79 LTLPIIMVEFLVLMFALDKIYYSPLGNFMDERDNAIKEKLNSVKDTSEEVKQLEEQAAAVMRAARAEISAALTKMKKETQ 158 (213)
Q Consensus 79 ~tl~~~lInFlIL~~iL~kfl~kpI~~~Ld~R~~~I~~~l~eAe~~~~ea~~~~~eae~~L~~Ar~ea~~Ii~~Ak~eAe 158 (213)
|++||++|||+||+|+|++|+|+||.++|++|++.|.++++++++.+.++++.+++|++++.+|+.++++|+++++.+++
T Consensus 23 ~~~~~~~inflil~~lL~~fl~kPi~~~l~~R~~~I~~~l~~Ae~~~~ea~~~~~e~e~~L~~Ar~eA~~Ii~~A~~eAe 102 (167)
T PRK08475 23 YDIIERTINFLIFVGILWYFAAKPLKNFYKSRINKISKRLEEIQEKLKESKEKKEDALKKLEEAKEKAELIVETAKKEAY 102 (167)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 028133 159 LEVEQKLAVGRKKIEAELQEALANLERQKEDTIKSLDSQIAALSEEIVRKVLP 211 (213)
Q Consensus 159 ~e~e~il~~Ak~e~e~~~~~A~~~I~~e~~~a~~eL~~ei~~lA~~ia~KiL~ 211 (213)
.++++++++++.+++++++.++.+++.+++++..++++++.+-+.+- ++++
T Consensus 103 ~~~~~ii~~A~~ea~~~~~~a~~~ie~Ek~~a~~elk~eii~~~~~~--~~~~ 153 (167)
T PRK08475 103 ILTQKIEKQTKDDIENLIKSFEELMEFEVRKMEREVVEEVLNELFES--KKVS 153 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hhcC
Confidence 99999999999999999999999999999999999999999988776 5543
No 23
>PF00430 ATP-synt_B: ATP synthase B/B' CF(0); InterPro: IPR002146 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunits B and B' from the F0 complex in F-ATPases found in chloroplasts and in bacterial plasma membranes. The B subunits are part of the peripheral stalk that links the F1 and F0 complexes together, and which acts as a stator to prevent certain subunits from rotating with the central rotary element. The peripheral stalk differs in subunit composition between mitochondrial, chloroplast and bacterial F-ATPases. In bacterial and chloroplast F-ATPases, the peripheral stalk is composed of one copy of the delta subunit (homologous to OSCP in mitochondria), and two copies of subunit B in bacteria, or one copy each of subunits B and B' in chloroplasts and photosynthetic bacteria []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0045263 proton-transporting ATP synthase complex, coupling factor F(o); PDB: 1L2P_A 2KHK_A 1B9U_A.
Probab=99.95 E-value=1.1e-26 Score=181.50 Aligned_cols=132 Identities=33% Similarity=0.507 Sum_probs=112.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133 80 TLPIIMVEFLVLMFALDKIYYSPLGNFMDERDNAIKEKLNSVKDTSEEVKQLEEQAAAVMRAARAEISAALTKMKKETQL 159 (213)
Q Consensus 80 tl~~~lInFlIL~~iL~kfl~kpI~~~Ld~R~~~I~~~l~eAe~~~~ea~~~~~eae~~L~~Ar~ea~~Ii~~Ak~eAe~ 159 (213)
|+||++|||+||+|+|++|+|||+.++|++|++.|.+.++++++.+.++++...+|+..+.+++.++.+++++++.+++.
T Consensus 1 tl~~~~i~Flil~~~l~~~~~~pi~~~l~~R~~~I~~~~~~a~~~~~ea~~~~~e~~~~l~~a~~ea~~i~~~a~~~a~~ 80 (132)
T PF00430_consen 1 TLFWQLINFLILFFLLNKFLYKPIKKFLDERKAKIQSELEEAEELKEEAEQLLAEYEEKLAEAREEAQEIIEEAKEEAEK 80 (132)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHHHHHCS--S-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHCHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 028133 160 EVEQKLAVGRKKIEAELQEALANLERQKEDTIKSLDSQIAALSEEIVRKVLP 211 (213)
Q Consensus 160 e~e~il~~Ak~e~e~~~~~A~~~I~~e~~~a~~eL~~ei~~lA~~ia~KiL~ 211 (213)
+.++++.++++++++++.++..+|+.++.++..++++++.++|+++++|+|+
T Consensus 81 ~~~~~~~ea~~~~~~~~~~a~~~i~~e~~~a~~~l~~~~~~la~~~a~kll~ 132 (132)
T PF00430_consen 81 EKEEILAEAEKEAERIIEQAEAEIEQEKEKAKKELRQEIVDLAVDIAEKLLN 132 (132)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT----------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999999999985
No 24
>TIGR01144 ATP_synt_b ATP synthase, F0 subunit b. This model describes the F1/F0 ATP synthase b subunit in bacteria only. Scoring just below the trusted cutoff are the N-terminal domains of Mycobacterial b/delta fusion proteins and a subunit from an archaeon, Methanosarcina barkeri, in which the ATP synthase homolog differs in architecture and is not experimentally confirmed. This model helps resolve b from the related b' subunit. Within the family is an example from a sodium-translocating rather than proton-translocating ATP synthase.
Probab=99.94 E-value=1.9e-25 Score=178.56 Aligned_cols=129 Identities=22% Similarity=0.331 Sum_probs=127.3
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133 84 IMVEFLVLMFALDKIYYSPLGNFMDERDNAIKEKLNSVKDTSEEVKQLEEQAAAVMRAARAEISAALTKMKKETQLEVEQ 163 (213)
Q Consensus 84 ~lInFlIL~~iL~kfl~kpI~~~Ld~R~~~I~~~l~eAe~~~~ea~~~~~eae~~L~~Ar~ea~~Ii~~Ak~eAe~e~e~ 163 (213)
++|||+||+|+|++|+|+||.++|++|++.|.++++++++.+.++++.+++|+..+.+|+.++.+|+++++.+++...++
T Consensus 1 q~i~Flil~~il~~~~~~pi~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~~~~l~~A~~ea~~i~~~a~~~a~~~~~~ 80 (147)
T TIGR01144 1 QLISFILLVWFCMKYVWPPLAKAIETRQKKIADGLASAERAKKEAALAQKKAQVILKEAKDEAQEIIENANKRGSEILEE 80 (147)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 028133 164 KLAVGRKKIEAELQEALANLERQKEDTIKSLDSQIAALSEEIVRKVLPV 212 (213)
Q Consensus 164 il~~Ak~e~e~~~~~A~~~I~~e~~~a~~eL~~ei~~lA~~ia~KiL~~ 212 (213)
++++++.+++++++.++.+|+.++..+..+|+.++.++|+.+++|+|++
T Consensus 81 ~~~~a~~e~~~~~~~a~~~i~~e~~~a~~~l~~~~~~lA~~~a~kll~~ 129 (147)
T TIGR01144 81 AKAEAREEREKIKAQARAEIEAEKEQAREELRKQVADLSVLGAEKIIER 129 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999986
No 25
>PRK09173 F0F1 ATP synthase subunit B; Validated
Probab=99.93 E-value=4.6e-24 Score=173.02 Aligned_cols=133 Identities=15% Similarity=0.184 Sum_probs=129.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133 80 TLPIIMVEFLVLMFALDKIYY-SPLGNFMDERDNAIKEKLNSVKDTSEEVKQLEEQAAAVMRAARAEISAALTKMKKETQ 158 (213)
Q Consensus 80 tl~~~lInFlIL~~iL~kfl~-kpI~~~Ld~R~~~I~~~l~eAe~~~~ea~~~~~eae~~L~~Ar~ea~~Ii~~Ak~eAe 158 (213)
.+||++|+|++|+|+|++|.| +||.++|++|++.|.+++++|++.+.++++.+.+|+..+.+|+.++++|+++++.+++
T Consensus 3 ~~~w~~i~f~i~l~~l~~~~~~~pi~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~~~e~~L~~A~~ea~~ii~~A~~~a~ 82 (159)
T PRK09173 3 ATFWAFVGLVLFLALVVYLKVPGMIARSLDARADRIKNELAEARRLREEAQQLLAEYQRKRKEAEKEAADIVAAAEREAE 82 (159)
T ss_pred chHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468999999999999999955 8999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 028133 159 LEVEQKLAVGRKKIEAELQEALANLERQKEDTIKSLDSQIAALSEEIVRKVLPV 212 (213)
Q Consensus 159 ~e~e~il~~Ak~e~e~~~~~A~~~I~~e~~~a~~eL~~ei~~lA~~ia~KiL~~ 212 (213)
...+++..++++++++++..++.+|+.++.++..++++++.++|+++++|+|++
T Consensus 83 ~~~~~a~~~a~~~~~~~~~~a~~~I~~ek~~a~~el~~~~~~lA~~~A~kil~~ 136 (159)
T PRK09173 83 ALTAEAKRKTEEYVARRNKLAEQKIAQAETDAINAVRSSAVDLAIAAAEKLLAE 136 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999986
No 26
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=99.93 E-value=1.9e-24 Score=201.05 Aligned_cols=134 Identities=13% Similarity=0.221 Sum_probs=132.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133 79 LTLPIIMVEFLVLMFALDKIYYSPLGNFMDERDNAIKEKLNSVKDTSEEVKQLEEQAAAVMRAARAEISAALTKMKKETQ 158 (213)
Q Consensus 79 ~tl~~~lInFlIL~~iL~kfl~kpI~~~Ld~R~~~I~~~l~eAe~~~~ea~~~~~eae~~L~~Ar~ea~~Ii~~Ak~eAe 158 (213)
||++|++|||+||+|+|+||+|+||.++|++|++.|.+++++|++.+.++++++++|++.+++|+.++++|+++++.+++
T Consensus 2 ~t~i~qlInFlIl~~lL~kfl~~Pi~~~l~~R~~~I~~~L~eAe~a~~ea~~~~~~~e~~L~~Ak~ea~~Ii~~A~~~A~ 81 (445)
T PRK13428 2 STFIGQLIGFAVIVFLVWRFVVPPVRRLMAARQDTVRQQLAESATAADRLAEADQAHTKAVEDAKAEAARVVEEAREDAE 81 (445)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 028133 159 LEVEQKLAVGRKKIEAELQEALANLERQKEDTIKSLDSQIAALSEEIVRKVLPV 212 (213)
Q Consensus 159 ~e~e~il~~Ak~e~e~~~~~A~~~I~~e~~~a~~eL~~ei~~lA~~ia~KiL~~ 212 (213)
.++++++++|++++++++++++.+|+.+++++..+++.++.++|++.++|+|++
T Consensus 82 ~~~~~~~~~A~~ea~~i~~~a~~~Ie~ek~~a~~elr~ei~~lAv~~A~kil~~ 135 (445)
T PRK13428 82 RIAEQLRAQADAEAERIKVQGARQVQLLRAQLTRQLRLELGHESVRQAGELVRN 135 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999974
No 27
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=99.90 E-value=1.1e-21 Score=158.63 Aligned_cols=134 Identities=13% Similarity=0.179 Sum_probs=130.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133 79 LTLPIIMVEFLVLMFALDKIYYSPLGNFMDERDNAIKEKLNSVKDTSEEVKQLEEQAAAVMRAARAEISAALTKMKKETQ 158 (213)
Q Consensus 79 ~tl~~~lInFlIL~~iL~kfl~kpI~~~Ld~R~~~I~~~l~eAe~~~~ea~~~~~eae~~L~~Ar~ea~~Ii~~Ak~eAe 158 (213)
.++||++|+|+||||++++|+||||.++|++|++.|.+++++|++.+++++++.++|++++.+||.++++|..+++..+.
T Consensus 11 sqifw~iI~FlILy~ll~kf~~ppI~~iLe~R~~~I~~~L~~Ae~~k~eAe~l~a~ye~~L~~Ar~eA~~I~~e~~~~~~ 90 (155)
T PRK06569 11 SQIFWLIVTFGLLYIFVYKFITPKAEEIFNNRQTNIQDNITQADTLTIEVEKLNKYYNEEIDKTNTEIDRLKKEKIDSLE 90 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 028133 159 LEVEQKLAVGRKKIEAELQEALANLERQKEDTIKSLDSQIAALSEEIVRKVLPV 212 (213)
Q Consensus 159 ~e~e~il~~Ak~e~e~~~~~A~~~I~~e~~~a~~eL~~ei~~lA~~ia~KiL~~ 212 (213)
.+.+.-....++++...+.+-..++....+..+.+..+++.+++++|++|++|+
T Consensus 91 a~~~~~~~~~ea~L~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~k~~~~ 144 (155)
T PRK06569 91 SEFLIKKKNLEQDLKNSINQNIEDINLAAKQFRTNKSEAIIKLAVNIIEKIAGT 144 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCc
Confidence 999999999999999999999999999999999999999999999999999985
No 28
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=99.23 E-value=1.9e-09 Score=88.74 Aligned_cols=133 Identities=13% Similarity=0.139 Sum_probs=104.6
Q ss_pred hhhhhhhhhcccCC-ccchHHHHHHHHHHHHHHHHHHHhhHHHH---HHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
Q 028133 63 PSLAAEIEKAALFD-FNLTLPIIMVEFLVLMFALDKIYYSPLGN---FMDERDNAIKEKLNSV----KDTSEEVKQLEEQ 134 (213)
Q Consensus 63 ~a~A~e~~~g~l~~-~n~tl~~~lInFlIL~~iL~kfl~kpI~~---~Ld~R~~~I~~~l~eA----e~~~~ea~~~~~e 134 (213)
.+-+++. -|.-++ |-|+++|++|.|++|+|++|+++-+-+.+ .+.+--+..++...++ .+++..+.+.+.+
T Consensus 8 ~~~~~~~-~~~~~~~~~~~iinflIl~~lL~~fl~kpI~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~~~~~~L~~a~~e 86 (174)
T PRK07352 8 ATEAEGG-FGLNLNLLETNLINLAIVIGLLYYFGRGFLGKILEERREAILQALKEAEERLRQAAQALAEAQQKLAQAQQE 86 (174)
T ss_pred HHhccCC-CCCchhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3454542 355455 55789999999999999999999877754 3333333444444444 4677778899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133 135 AAAVMRAARAEISAALTKMKKETQLEVEQKLAVGRKKIEAELQEALANLERQKEDTIKSLDS 196 (213)
Q Consensus 135 ae~~L~~Ar~ea~~Ii~~Ak~eAe~e~e~il~~Ak~e~e~~~~~A~~~I~~e~~~a~~eL~~ 196 (213)
+...+.+++.+++.++++...+++.+.++++..++.+++.+++.+..+++.+.....-++-.
T Consensus 87 a~~ii~~a~~~a~~~~~~~~~~A~~e~~~~~~~a~~~i~~e~~~a~~~l~~qi~~la~~~A~ 148 (174)
T PRK07352 87 AERIRADAKARAEAIRAEIEKQAIEDMARLKQTAAADLSAEQERVIAQLRREAAELAIAKAE 148 (174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998887655444444
No 29
>PRK06568 F0F1 ATP synthase subunit B; Validated
Probab=99.13 E-value=1.2e-08 Score=82.83 Aligned_cols=122 Identities=14% Similarity=0.106 Sum_probs=102.2
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133 77 FNLTLPIIMVEFLVLMFALDKIYYSPLGNFMDERDNAIKE-------KLNSVKDTSEEVKQLEEQAAAVMRAARAEISAA 149 (213)
Q Consensus 77 ~n~tl~~~lInFlIL~~iL~kfl~kpI~~~Ld~R~~~I~~-------~l~eAe~~~~ea~~~~~eae~~L~~Ar~ea~~I 149 (213)
+-|+++.++|.|+||..++|+.+.+-+.+--+.-++.+.+ ...--++++..+.+.+.++..++++|+.+++.+
T Consensus 7 ~fwq~I~FlIll~ll~kfawkPI~~~LeeR~~~I~~~Ld~Ae~~r~eA~~l~~e~e~~L~~Ar~EA~~Ii~~A~~~a~~~ 86 (154)
T PRK06568 7 SFWLAVSFVIFVYLIYRPAKKAILNSLDAKILEVQEKVLKAEKLKEDAALLFEQTNAQIKKLETLRSQMIEESNEVTKKI 86 (154)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4588999999999999999999998876544444444433 233334677888999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133 150 LTKMKKETQLEVEQKLAVGRKKIEAELQEALANLERQKEDTIKSLDSQI 198 (213)
Q Consensus 150 i~~Ak~eAe~e~e~il~~Ak~e~e~~~~~A~~~I~~e~~~a~~eL~~ei 198 (213)
+++++.+++.+.+++++.|+.+++.+++.|..+++.+.....-++-++-
T Consensus 87 ~~ea~~eA~~ea~r~~~~A~~~Ie~Ek~~Al~elr~eva~Lav~iAsk~ 135 (154)
T PRK06568 87 IQEKTKEIEEFLEHKKSDAIQLIQNQKSTASKELQDEFCDEVIKLVSEY 135 (154)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999887766665544
No 30
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=99.09 E-value=2e-08 Score=82.71 Aligned_cols=125 Identities=11% Similarity=0.165 Sum_probs=103.3
Q ss_pred CCccchHHHHHHHHHHHHHHHHHHHhhHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133 75 FDFNLTLPIIMVEFLVLMFALDKIYYSPLGN-------FMDERDNAIKEKLNSVKDTSEEVKQLEEQAAAVMRAARAEIS 147 (213)
Q Consensus 75 ~~~n~tl~~~lInFlIL~~iL~kfl~kpI~~-------~Ld~R~~~I~~~l~eAe~~~~ea~~~~~eae~~L~~Ar~ea~ 147 (213)
+.+-|+++.++|.|++|.+++|+.+.+-+.+ -+++-++.-.+....-++++.++.+++.++..++.+++.++.
T Consensus 19 ~t~~~~iInFliL~~lL~~~l~~pi~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~~ii~~a~~~a~ 98 (173)
T PRK13453 19 GTVIVTVLTFIVLLALLKKFAWGPLKDVMDKRERDINRDIDDAEQAKLNAQKLEEENKQKLKETQEEVQKILEDAKVQAR 98 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566899999999999999999999877654 333333333334444457888889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133 148 AALTKMKKETQLEVEQKLAVGRKKIEAELQEALANLERQKEDTIKSLDSQIA 199 (213)
Q Consensus 148 ~Ii~~Ak~eAe~e~e~il~~Ak~e~e~~~~~A~~~I~~e~~~a~~eL~~ei~ 199 (213)
.+.++...+++.+.++++.+++.+++.+.+.+..+++.+.....-++-+++.
T Consensus 99 ~~~~~~~~~A~~ea~~~~~~A~~~I~~ek~~a~~~l~~ei~~lA~~~a~kll 150 (173)
T PRK13453 99 QQQEQIIHEANVRANGMIETAQSEINSQKERAIADINNQVSELSVLIASKVL 150 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999998877666655553
No 31
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=99.09 E-value=2.1e-08 Score=82.51 Aligned_cols=123 Identities=22% Similarity=0.199 Sum_probs=99.7
Q ss_pred CccchHHHHHHHHHHHHHHHHHHHhhHHHH---HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133 76 DFNLTLPIIMVEFLVLMFALDKIYYSPLGN---FMDERDNAIKEKLNSV----KDTSEEVKQLEEQAAAVMRAARAEISA 148 (213)
Q Consensus 76 ~~n~tl~~~lInFlIL~~iL~kfl~kpI~~---~Ld~R~~~I~~~l~eA----e~~~~ea~~~~~eae~~L~~Ar~ea~~ 148 (213)
.+-|+++.++|.+++|.+++|+.+.+-+.+ .+.+--+..++...++ .+++..+.+.+.++..++.+|+.++..
T Consensus 18 ~~~~~~i~Flil~~iL~~~~~kpi~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~~ii~~A~~ea~~ 97 (173)
T PRK13460 18 LVVWTLVTFLVVVLVLKKFAWDVILKALDERASGVQNDINKASELRLEAEALLKDYEARLNSAKDEANAIVAEAKSDALK 97 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345888889999999999999998877654 3333333444444444 467788889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133 149 ALTKMKKETQLEVEQKLAVGRKKIEAELQEALANLERQKEDTIKSLDSQI 198 (213)
Q Consensus 149 Ii~~Ak~eAe~e~e~il~~Ak~e~e~~~~~A~~~I~~e~~~a~~eL~~ei 198 (213)
+.++...+++.+.+++++.++.+++.+.+++..+++.+.....-++-+++
T Consensus 98 ~~~~~~~~A~~ea~~~~~~a~~~ie~e~~~a~~el~~ei~~lA~~~a~ki 147 (173)
T PRK13460 98 LKNKLLEETNNEVKAQKDQAVKEIELAKGKALSQLQNQIVEMTITIASKV 147 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999988876655544443
No 32
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=99.07 E-value=3.5e-08 Score=79.88 Aligned_cols=124 Identities=17% Similarity=0.238 Sum_probs=102.7
Q ss_pred CCccchHHHHHHHHHHHHHHHHHHHhhHHHH---HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133 75 FDFNLTLPIIMVEFLVLMFALDKIYYSPLGN---FMDERDNAIKEKLNSVK----DTSEEVKQLEEQAAAVMRAARAEIS 147 (213)
Q Consensus 75 ~~~n~tl~~~lInFlIL~~iL~kfl~kpI~~---~Ld~R~~~I~~~l~eAe----~~~~ea~~~~~eae~~L~~Ar~ea~ 147 (213)
.++-|+++.++|.+++|..++|+.+.+-+.+ .+.+.-+..++...+++ +++..+.+.+.++...+.+++.+++
T Consensus 23 ~t~~~~~inFliL~~lL~k~l~~Pi~~~l~~R~~~I~~~l~~Ae~~~~ea~~~~~e~e~~L~~A~~ea~~ii~~A~~~a~ 102 (156)
T CHL00118 23 ATLPLMALQFLLLMVLLNIILYKPLLKVLDERKEYIRKNLTKASEILAKANELTKQYEQELSKARKEAQLEITQSQKEAK 102 (156)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566888889999999999999998776653 44444444444444444 6777788888899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133 148 AALTKMKKETQLEVEQKLAVGRKKIEAELQEALANLERQKEDTIKSLDSQI 198 (213)
Q Consensus 148 ~Ii~~Ak~eAe~e~e~il~~Ak~e~e~~~~~A~~~I~~e~~~a~~eL~~ei 198 (213)
.+.++...+++.+.++++++++.+++.+++.+..+++.+......++-+++
T Consensus 103 ~~~~~~~~~A~~ea~~~~~~a~~~i~~ek~~a~~~l~~~v~~lA~~ia~ki 153 (156)
T CHL00118 103 EIVENELKQAQKYIDSLLNEATKQLEAQKEKALKSLEEQVDTLSDQIEEKL 153 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999888777766655
No 33
>PRK08475 F0F1 ATP synthase subunit B; Validated
Probab=99.06 E-value=2.2e-08 Score=82.11 Aligned_cols=127 Identities=17% Similarity=0.196 Sum_probs=100.2
Q ss_pred hhhhhhhhhcccCCccchHHHHHHHHHHHHHHHHHHHhhHHHHH---HHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Q 028133 63 PSLAAEIEKAALFDFNLTLPIIMVEFLVLMFALDKIYYSPLGNF---MDERDNAIKEKLNSV----KDTSEEVKQLEEQA 135 (213)
Q Consensus 63 ~a~A~e~~~g~l~~~n~tl~~~lInFlIL~~iL~kfl~kpI~~~---Ld~R~~~I~~~l~eA----e~~~~ea~~~~~ea 135 (213)
+|+|++++++...++-|+++.++|.+++|.+++|+.+.+-+.+. +.+--+..++...++ +++++.+.+++.++
T Consensus 11 ~a~~~~~~~~~~~~~~~~~inflil~~lL~~fl~kPi~~~l~~R~~~I~~~l~~Ae~~~~ea~~~~~e~e~~L~~Ar~eA 90 (167)
T PRK08475 11 YAFAASLGATEQYDIIERTINFLIFVGILWYFAAKPLKNFYKSRINKISKRLEEIQEKLKESKEKKEDALKKLEEAKEKA 90 (167)
T ss_pred HHHHcccCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55554322222366889988899999999999999998877653 333333333344444 46777788899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133 136 AAVMRAARAEISAALTKMKKETQLEVEQKLAVGRKKIEAELQEALANLERQKED 189 (213)
Q Consensus 136 e~~L~~Ar~ea~~Ii~~Ak~eAe~e~e~il~~Ak~e~e~~~~~A~~~I~~e~~~ 189 (213)
..++.+|+.+++.+.++...+++.+.++++..++.+++.++.++..++.++.-.
T Consensus 91 ~~Ii~~A~~eAe~~~~~ii~~A~~ea~~~~~~a~~~ie~Ek~~a~~elk~eii~ 144 (167)
T PRK08475 91 ELIVETAKKEAYILTQKIEKQTKDDIENLIKSFEELMEFEVRKMEREVVEEVLN 144 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999777653
No 34
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=99.05 E-value=5e-08 Score=80.97 Aligned_cols=119 Identities=15% Similarity=0.106 Sum_probs=97.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHhhHHHH---HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133 79 LTLPIIMVEFLVLMFALDKIYYSPLGN---FMDERDNAIKEKLNSVK----DTSEEVKQLEEQAAAVMRAARAEISAALT 151 (213)
Q Consensus 79 ~tl~~~lInFlIL~~iL~kfl~kpI~~---~Ld~R~~~I~~~l~eAe----~~~~ea~~~~~eae~~L~~Ar~ea~~Ii~ 151 (213)
++++.++|.|++|++|+|+++.+-+.+ .+.+.-+..++...+++ +++..+.+++.++...+.+|+.+++.+.+
T Consensus 29 ~~~Inflill~lL~~fl~kPI~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~L~~A~~ea~~ii~~A~~~ae~~~~ 108 (184)
T CHL00019 29 TNLINLSVVLGVLIYFGKGVLSDLLDNRKQTILNTIRNSEERREEAIEKLEKARARLRQAELEADEIRVNGYSEIEREKE 108 (184)
T ss_pred HHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468889999999999999999887754 44444444444444444 66777888888999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133 152 KMKKETQLEVEQKLAVGRKKIEAELQEALANLERQKEDTIKSLDSQ 197 (213)
Q Consensus 152 ~Ak~eAe~e~e~il~~Ak~e~e~~~~~A~~~I~~e~~~a~~eL~~e 197 (213)
+...+++.+.++++++++.+++.+++.+..+++.+.....-+.-++
T Consensus 109 ~il~~A~~ea~~~~~~a~~~ie~Ek~~a~~~l~~ei~~lav~~A~k 154 (184)
T CHL00019 109 NLINQAKEDLERLENYKNETIRFEQQRAINQVRQQVFQLALQRALG 154 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999988877654444333
No 35
>TIGR02926 AhaH ATP synthase archaeal, H subunit. he A1/A0 ATP synthase is homologous to the V-type (V1/V0, vacuolar) ATPase, but functions in the ATP synthetic direction as does the F1/F0 ATPase of bacteria. The hydrophilic A1 "stalk" complex (AhaABCDEFG) is the site of ATP generation and is coupled to the membrane-embedded proton translocating A0 complex. It is unclear precisely where AhaH fits into these complexes.
Probab=99.04 E-value=8.9e-09 Score=75.44 Aligned_cols=83 Identities=22% Similarity=0.294 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133 127 EVKQLEEQAAAVMRAARAEISAALTKMKKETQLEVEQKLAVGRKKIEAELQEALANLERQKEDTIKSLDSQIAALSEEIV 206 (213)
Q Consensus 127 ea~~~~~eae~~L~~Ar~ea~~Ii~~Ak~eAe~e~e~il~~Ak~e~e~~~~~A~~~I~~e~~~a~~eL~~ei~~lA~~ia 206 (213)
.+.....+|+..+.+|+.++.+|+.+|+.+++..+++++.+|+.+.++++..|+.+++.++..+..+++.++.+|++...
T Consensus 3 ~ik~ae~~~~~~l~~A~~ea~~Ii~~A~~~A~~~~~~a~~~A~~ea~~ii~~Ak~ei~~e~~~a~~e~k~ev~~L~~~~~ 82 (85)
T TIGR02926 3 EIKKAEEDAEELIEEAEEERKQRIAEAREEARELLEEAEEEASKLGEEIIKEAEEEIEKEAEKIREEGEKEIEAMKSKAK 82 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 46678899999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred Hhh
Q 028133 207 RKV 209 (213)
Q Consensus 207 ~Ki 209 (213)
+++
T Consensus 83 ~~~ 85 (85)
T TIGR02926 83 EKI 85 (85)
T ss_pred hcC
Confidence 764
No 36
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=99.03 E-value=4.7e-08 Score=82.74 Aligned_cols=126 Identities=16% Similarity=0.176 Sum_probs=103.7
Q ss_pred cccCCccchHHHHHHHHHHHHHHHHHHHhhHHHH---HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Q 028133 72 AALFDFNLTLPIIMVEFLVLMFALDKIYYSPLGN---FMDERDNAIKEKLNSVK----DTSEEVKQLEEQAAAVMRAARA 144 (213)
Q Consensus 72 g~l~~~n~tl~~~lInFlIL~~iL~kfl~kpI~~---~Ld~R~~~I~~~l~eAe----~~~~ea~~~~~eae~~L~~Ar~ 144 (213)
+..+.|-|+++.++|.+++|.+++|+.+.+-+.+ .+.+.-+..++...+++ +++..+.+++.++..++.+|+.
T Consensus 46 ~~~~~~i~qlInFlIlv~lL~k~l~kPi~~~L~~R~~~I~~~L~~Ae~~~~eA~~~l~e~e~~L~~A~~eA~~Ii~~A~~ 125 (205)
T PRK06231 46 PNFWVFIAHLIAFSILLLLGIFLFWKPTQRFLNKRKELIEAEINQANELKQQAQQLLENAKQRHENALAQAKEIIDQANY 125 (205)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345677899999999999999999998887754 45555555555555554 6777888899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133 145 EISAALTKMKKETQLEVEQKLAVGRKKIEAELQEALANLERQKEDTIKSLDSQ 197 (213)
Q Consensus 145 ea~~Ii~~Ak~eAe~e~e~il~~Ak~e~e~~~~~A~~~I~~e~~~a~~eL~~e 197 (213)
++..+.+++..+|+.+.++++.+++.+++.+++++..+++.+.....-+.-+.
T Consensus 126 eAe~~~e~i~~~A~~eae~ii~~A~~~Ie~Ek~~a~~~Lk~ei~~lAv~iA~k 178 (205)
T PRK06231 126 EALQLKSELEKEANRQANLIIFQARQEIEKERRELKEQLQKESVELAMLAAEE 178 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999988877655444443
No 37
>PRK13461 F0F1 ATP synthase subunit B; Provisional
Probab=99.02 E-value=6.6e-08 Score=78.32 Aligned_cols=123 Identities=14% Similarity=0.158 Sum_probs=99.3
Q ss_pred CccchHHHHHHHHHHHHHHHHHHHhhHHHHH---HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133 76 DFNLTLPIIMVEFLVLMFALDKIYYSPLGNF---MDERDNAIKEK----LNSVKDTSEEVKQLEEQAAAVMRAARAEISA 148 (213)
Q Consensus 76 ~~n~tl~~~lInFlIL~~iL~kfl~kpI~~~---Ld~R~~~I~~~----l~eAe~~~~ea~~~~~eae~~L~~Ar~ea~~ 148 (213)
+|-|+++.++|.|++|.+++|+.+.+-+.+- +.+--+..++. ...-++++.++.+++.++..++.+|+.++..
T Consensus 7 ~~~~~~inF~il~~iL~~f~~kpi~~~l~~R~~~I~~~l~~A~~~~~eA~~~~~e~~~~l~~a~~ea~~ii~~a~~~a~~ 86 (159)
T PRK13461 7 TIIATIINFIILLLILKHFFFDKIKAVIDSRQSEIDNKIEKADEDQKKARELKLKNERELKNAKEEGKKIVEEYKSKAEN 86 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4558888899999999999999988877542 33333333333 3334467788889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133 149 ALTKMKKETQLEVEQKLAVGRKKIEAELQEALANLERQKEDTIKSLDSQI 198 (213)
Q Consensus 149 Ii~~Ak~eAe~e~e~il~~Ak~e~e~~~~~A~~~I~~e~~~a~~eL~~ei 198 (213)
+.++...+++.+.++++.+++.+++.++..+..+++.+.....-++-+++
T Consensus 87 ~~~~i~~~A~~ea~~~~~~a~~~i~~e~~~a~~~l~~ei~~lA~~~a~ki 136 (159)
T PRK13461 87 VYEEIVKEAHEEADLIIERAKLEAQREKEKAEYEIKNQAVDLAVLLSSKA 136 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999988876655554444
No 38
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=99.02 E-value=7.6e-08 Score=79.23 Aligned_cols=122 Identities=17% Similarity=0.198 Sum_probs=98.9
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHhhHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133 77 FNLTLPIIMVEFLVLMFALDKIYYSPLGN-------FMDERDNAIKEKLNSVKDTSEEVKQLEEQAAAVMRAARAEISAA 149 (213)
Q Consensus 77 ~n~tl~~~lInFlIL~~iL~kfl~kpI~~-------~Ld~R~~~I~~~l~eAe~~~~ea~~~~~eae~~L~~Ar~ea~~I 149 (213)
+-|+++.++|.+++|.+++|+.+.+-+.+ .+++-++.-.+....-++++.++.+++.++..++.+|+.++..+
T Consensus 21 ~~~~~i~Flil~~lL~~~l~kpi~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~L~~a~~ea~~ii~~A~~~a~~~ 100 (175)
T PRK14472 21 IFWTAVTFVIVLLILKKIAWGPILSALEEREKGIQSSIDRAHSAKDEAEAILRKNRELLAKADAEADKIIREGKEYAEKL 100 (175)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44888899999999999999998877654 33333333333333334688888999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133 150 LTKMKKETQLEVEQKLAVGRKKIEAELQEALANLERQKEDTIKSLDSQI 198 (213)
Q Consensus 150 i~~Ak~eAe~e~e~il~~Ak~e~e~~~~~A~~~I~~e~~~a~~eL~~ei 198 (213)
.++...+|+.+.+++++.++.+++.+.+.+..+++.+.....-++-.++
T Consensus 101 ~~~~~~~A~~ea~~~~~~a~~~I~~e~~~a~~~l~~~i~~lA~~~a~ki 149 (175)
T PRK14472 101 RAEITEKAHTEAKKMIASAKEEIEQEKRRALDVLRNEVADLAVKGAEKI 149 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999888876655544444
No 39
>PRK14475 F0F1 ATP synthase subunit B; Provisional
Probab=99.02 E-value=9.1e-08 Score=78.32 Aligned_cols=123 Identities=20% Similarity=0.238 Sum_probs=97.4
Q ss_pred ccchHHHHHHHHHHH--HHHHHHHHhhHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133 77 FNLTLPIIMVEFLVL--MFALDKIYYSPLGNF-------MDERDNAIKEKLNSVKDTSEEVKQLEEQAAAVMRAARAEIS 147 (213)
Q Consensus 77 ~n~tl~~~lInFlIL--~~iL~kfl~kpI~~~-------Ld~R~~~I~~~l~eAe~~~~ea~~~~~eae~~L~~Ar~ea~ 147 (213)
+-|++++++|+|+|| ..++|+++..-+.+- +++-++.-.+....-.+++..+.+++.++..++.+|+.+++
T Consensus 11 ~~w~~i~f~il~~iL~~~k~l~~pi~~~le~R~~~I~~~l~~Ae~~k~eAe~~~~~~e~~L~~A~~ea~~Ii~~A~~~a~ 90 (167)
T PRK14475 11 EFWVGAGLLIFFGILIALKVLPKALAGALDAYAAKIQAELDEAQRLREEAQALLADVKAEREEAERQAAAMLAAAKADAR 90 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 458888888888877 578888887766543 33333322233333347788888999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133 148 AALTKMKKETQLEVEQKLAVGRKKIEAELQEALANLERQKEDTIKSLDSQIA 199 (213)
Q Consensus 148 ~Ii~~Ak~eAe~e~e~il~~Ak~e~e~~~~~A~~~I~~e~~~a~~eL~~ei~ 199 (213)
.+.+++..+++.+.+++++.|+.+++.++..+..+++.+.....-+.-+++.
T Consensus 91 ~~~~~~~~~A~~ea~~~~~~A~~~I~~e~~~a~~el~~e~~~lAv~~A~kil 142 (167)
T PRK14475 91 RMEAEAKEKLEEQIKRRAEMAERKIAQAEAQAAADVKAAAVDLAAQAAETVL 142 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999998876655555544
No 40
>PRK08404 V-type ATP synthase subunit H; Validated
Probab=99.02 E-value=1.9e-08 Score=76.43 Aligned_cols=86 Identities=14% Similarity=0.197 Sum_probs=79.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133 124 TSEEVKQLEEQAAAVMRAARAEISAALTKMKKETQLEVEQKLAVGRKKIEAELQEALANLERQKEDTIKSLDSQIAALSE 203 (213)
Q Consensus 124 ~~~ea~~~~~eae~~L~~Ar~ea~~Ii~~Ak~eAe~e~e~il~~Ak~e~e~~~~~A~~~I~~e~~~a~~eL~~ei~~lA~ 203 (213)
.-..+.+...+|+..|.+|+.++..|+++|+.+++.++++++.+|+.+++++++.|+.+++.++..+..+++.++.+|+.
T Consensus 4 ~i~~ik~aE~~~e~~L~~A~~Ea~~Ii~~Ak~~A~k~~~eii~eA~~eA~~ile~Ak~eie~Ek~~a~~elk~eia~L~~ 83 (103)
T PRK08404 4 VIKEIVKAEKEAEERIEKAKEEAKKIIRKAKEEAKKIEEEIIKKAEEEAQKLIEKKKKEGEEEAKKILEEGEKEIEELKV 83 (103)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567788999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHHhh
Q 028133 204 EIVRKV 209 (213)
Q Consensus 204 ~ia~Ki 209 (213)
..-.|+
T Consensus 84 ~a~~k~ 89 (103)
T PRK08404 84 KAEENF 89 (103)
T ss_pred HHHHHH
Confidence 765553
No 41
>PRK09173 F0F1 ATP synthase subunit B; Validated
Probab=99.01 E-value=1.2e-07 Score=76.88 Aligned_cols=124 Identities=13% Similarity=0.142 Sum_probs=93.0
Q ss_pred CccchHHHHHHHHHHHHHHHH-HHHhhHHHH---HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133 76 DFNLTLPIIMVEFLVLMFALD-KIYYSPLGN---FMDERDNAIKEK----LNSVKDTSEEVKQLEEQAAAVMRAARAEIS 147 (213)
Q Consensus 76 ~~n~tl~~~lInFlIL~~iL~-kfl~kpI~~---~Ld~R~~~I~~~----l~eAe~~~~ea~~~~~eae~~L~~Ar~ea~ 147 (213)
++-|+++.+++.|++|+++.+ +.+.+-+.+ .+.+.-+..+.. ...-.+++.++.+.+.++..++.+|+.++.
T Consensus 3 ~~~w~~i~f~i~l~~l~~~~~~~pi~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~~~e~~L~~A~~ea~~ii~~A~~~a~ 82 (159)
T PRK09173 3 ATFWAFVGLVLFLALVVYLKVPGMIARSLDARADRIKNELAEARRLREEAQQLLAEYQRKRKEAEKEAADIVAAAEREAE 82 (159)
T ss_pred chHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344666666666666666645 566555433 333333333333 334457888889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133 148 AALTKMKKETQLEVEQKLAVGRKKIEAELQEALANLERQKEDTIKSLDSQIA 199 (213)
Q Consensus 148 ~Ii~~Ak~eAe~e~e~il~~Ak~e~e~~~~~A~~~I~~e~~~a~~eL~~ei~ 199 (213)
.++++++.+++.+.++++..++.+++.++.++..++..+.....-+.-+++.
T Consensus 83 ~~~~~a~~~a~~~~~~~~~~a~~~I~~ek~~a~~el~~~~~~lA~~~A~kil 134 (159)
T PRK09173 83 ALTAEAKRKTEEYVARRNKLAEQKIAQAETDAINAVRSSAVDLAIAAAEKLL 134 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999988776655555443
No 42
>PRK14471 F0F1 ATP synthase subunit B; Provisional
Probab=99.00 E-value=1.1e-07 Score=77.50 Aligned_cols=123 Identities=16% Similarity=0.223 Sum_probs=100.3
Q ss_pred CccchHHHHHHHHHHHHHHHHHHHhhHHHH---HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133 76 DFNLTLPIIMVEFLVLMFALDKIYYSPLGN---FMDERDNAIKEKLNSVK----DTSEEVKQLEEQAAAVMRAARAEISA 148 (213)
Q Consensus 76 ~~n~tl~~~lInFlIL~~iL~kfl~kpI~~---~Ld~R~~~I~~~l~eAe----~~~~ea~~~~~eae~~L~~Ar~ea~~ 148 (213)
.|-|+++.++|.|++|.+++|+.+.+-+.+ .+.+--+..++...+++ ++...+.+++.++..++.+|+.+++.
T Consensus 10 ~~~~~~i~Flil~~ll~~~l~~pi~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~e~~l~~A~~ea~~ii~~A~~~a~~ 89 (164)
T PRK14471 10 LFFWQTILFLILLLLLAKFAWKPILGAVKEREDSIKNALASAEEARKEMQNLQADNERLLKEARAERDAILKEAREIKEK 89 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345888999999999999999999887764 33333333444444443 56677788999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133 149 ALTKMKKETQLEVEQKLAVGRKKIEAELQEALANLERQKEDTIKSLDSQI 198 (213)
Q Consensus 149 Ii~~Ak~eAe~e~e~il~~Ak~e~e~~~~~A~~~I~~e~~~a~~eL~~ei 198 (213)
+++++..+++.+.++++++++.+++.+++.+..+++.+.....-++-+++
T Consensus 90 ~~~~~~~~A~~ea~~~~~~a~~~i~~ek~~a~~~l~~~i~~la~~~a~ki 139 (164)
T PRK14471 90 MIADAKEEAQVEGDKMIEQAKASIESEKNAAMAEIKNQVANLSVEIAEKV 139 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998887665555554
No 43
>PRK14473 F0F1 ATP synthase subunit B; Provisional
Probab=99.00 E-value=1.2e-07 Score=77.12 Aligned_cols=123 Identities=18% Similarity=0.183 Sum_probs=100.0
Q ss_pred CccchHHHHHHHHHHHHHHHHHHHhhHHHH---HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133 76 DFNLTLPIIMVEFLVLMFALDKIYYSPLGN---FMDERDNAIKEKLNSVK----DTSEEVKQLEEQAAAVMRAARAEISA 148 (213)
Q Consensus 76 ~~n~tl~~~lInFlIL~~iL~kfl~kpI~~---~Ld~R~~~I~~~l~eAe----~~~~ea~~~~~eae~~L~~Ar~ea~~ 148 (213)
.|-|+++.++|.|++|.+|+|+.+.+-+.+ .+.+--+..++...+++ +++..+.+++.++..++.+|+.++..
T Consensus 10 ~~~~~~inflil~~lL~~fl~kpi~~~l~~R~~~I~~~l~~Ae~~~~ea~~~~~e~e~~l~~A~~ea~~ii~~A~~~a~~ 89 (164)
T PRK14473 10 LLIAQLINFLLLIFLLRTFLYRPVLNLLNERTRRIEESLRDAEKVREQLANAKRDYEAELAKARQEAAKIVAQAQERARA 89 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355889999999999999999999887764 33333333444444443 66777788899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133 149 ALTKMKKETQLEVEQKLAVGRKKIEAELQEALANLERQKEDTIKSLDSQI 198 (213)
Q Consensus 149 Ii~~Ak~eAe~e~e~il~~Ak~e~e~~~~~A~~~I~~e~~~a~~eL~~ei 198 (213)
+.++...+++.+.++++++++.+++.+++.+..+++.+.....-++-+.+
T Consensus 90 ~~~~~l~~A~~ea~~~~~~a~~~I~~ek~~a~~~L~~~i~~la~~~a~ki 139 (164)
T PRK14473 90 QEAEIIAQARREAEKIKEEARAQAEQERQRMLSELKSQIADLVTLTASRV 139 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999888776655544443
No 44
>COG0711 AtpF F0F1-type ATP synthase, subunit b [Energy production and conversion]
Probab=98.97 E-value=2.2e-07 Score=75.79 Aligned_cols=121 Identities=18% Similarity=0.221 Sum_probs=101.3
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133 77 FNLTLPIIMVEFLVLMFALDKIYYSPLGNFMDERDNAIKEK-------LNSVKDTSEEVKQLEEQAAAVMRAARAEISAA 149 (213)
Q Consensus 77 ~n~tl~~~lInFlIL~~iL~kfl~kpI~~~Ld~R~~~I~~~-------l~eAe~~~~ea~~~~~eae~~L~~Ar~ea~~I 149 (213)
+-|.++.+++.++++++++|+.+.+-+.+.-+.-.+.+.+. ...-+++..++.+++.++..++++|+.++..+
T Consensus 9 ~~~~~i~F~ill~ll~~~~~~pi~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~~~~~~l~~Ar~~a~~Ii~~A~~~a~~~ 88 (161)
T COG0711 9 ILWQLIAFVILLWLLKKFVWKPILKALDERQAKIADDLAEAERLKEEAQALLAEYEQELEEAREQASEIIEQAKKEAEQI 88 (161)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56888889999999999999999888776555555554432 22234678888899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133 150 LTKMKKETQLEVEQKLAVGRKKIEAELQEALANLERQKEDTIKSLDSQ 197 (213)
Q Consensus 150 i~~Ak~eAe~e~e~il~~Ak~e~e~~~~~A~~~I~~e~~~a~~eL~~e 197 (213)
.++.+.+++.+.++++..++.+++..+.++..++..+..+....+-..
T Consensus 89 ~~e~~~~a~~e~~r~~~~a~~~I~~e~~~a~~~l~~~~~~la~~~aek 136 (161)
T COG0711 89 AEEIKAEAEEELERIKEAAEAEIEAEKERALEELRAEVAELAVAIAEK 136 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999988766554444
No 45
>PRK07353 F0F1 ATP synthase subunit B'; Validated
Probab=98.96 E-value=2.1e-07 Score=73.61 Aligned_cols=124 Identities=20% Similarity=0.178 Sum_probs=100.7
Q ss_pred CCccchHHHHHHHHHHHHHHHHHHHhhHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133 75 FDFNLTLPIIMVEFLVLMFALDKIYYSPLGN-------FMDERDNAIKEKLNSVKDTSEEVKQLEEQAAAVMRAARAEIS 147 (213)
Q Consensus 75 ~~~n~tl~~~lInFlIL~~iL~kfl~kpI~~-------~Ld~R~~~I~~~l~eAe~~~~ea~~~~~eae~~L~~Ar~ea~ 147 (213)
+++-|+++.++|.+++|.+++|+.+.+-+.+ .+++-++.-.+....-.++...+.+.+.++..++.+++.++.
T Consensus 6 ~t~~~~~i~flil~~ll~~~l~~pi~~~l~~R~~~I~~~l~~Ae~~~~ea~~~~~~~e~~L~~a~~ea~~i~~~a~~~a~ 85 (140)
T PRK07353 6 ATLPLMAVQFVLLTFILNALFYKPVGKVVEEREDYIRTNRAEAKERLAEAEKLEAQYEQQLASARKQAQAVIAEAEAEAD 85 (140)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455777888899999999999988776653 333333333333444457788888999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133 148 AALTKMKKETQLEVEQKLAVGRKKIEAELQEALANLERQKEDTIKSLDSQI 198 (213)
Q Consensus 148 ~Ii~~Ak~eAe~e~e~il~~Ak~e~e~~~~~A~~~I~~e~~~a~~eL~~ei 198 (213)
...+....+++.+.++++++++.+++.+.+.+..++..+......++-+++
T Consensus 86 ~~~~~~~~~a~~ea~~~~~~a~~~i~~e~~~a~~~l~~~v~~la~~~a~kl 136 (140)
T PRK07353 86 KLAAEALAEAQAEAQASKEKARREIEQQKQAALAQLEQQVDALSRQILEKL 136 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999887776665554
No 46
>PRK05759 F0F1 ATP synthase subunit B; Validated
Probab=98.94 E-value=2.2e-07 Score=74.71 Aligned_cols=123 Identities=15% Similarity=0.150 Sum_probs=98.9
Q ss_pred CccchHHHHHHHHHHHHHHHHHHHhhHHHH---HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133 76 DFNLTLPIIMVEFLVLMFALDKIYYSPLGN---FMDERDNAIKEKLNSV----KDTSEEVKQLEEQAAAVMRAARAEISA 148 (213)
Q Consensus 76 ~~n~tl~~~lInFlIL~~iL~kfl~kpI~~---~Ld~R~~~I~~~l~eA----e~~~~ea~~~~~eae~~L~~Ar~ea~~ 148 (213)
++-|+++.++|.|+||.+++++.+.+-+.+ .+.+--+.......++ .+++..+.++..++..++.+++.++..
T Consensus 6 ~~~~~~i~Flil~~il~~~~~~pi~~~l~~R~~~I~~~l~~a~~~~~~a~~~~~e~~~~l~~a~~ea~~i~~~a~~ea~~ 85 (156)
T PRK05759 6 TLIGQLIAFLILVWFIMKFVWPPIMKALEERQKKIADGLAAAERAKKELELAQAKYEAQLAEARAEAAEIIEQAKKRAAQ 85 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455888889999999999999988777654 3333333333334444 467788888999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133 149 ALTKMKKETQLEVEQKLAVGRKKIEAELQEALANLERQKEDTIKSLDSQI 198 (213)
Q Consensus 149 Ii~~Ak~eAe~e~e~il~~Ak~e~e~~~~~A~~~I~~e~~~a~~eL~~ei 198 (213)
+.++...+++.+.++++..++.+++.+.+.+..+++.+.....-+.-.++
T Consensus 86 ~~~~~~~~a~~ea~~~~~~a~~~i~~e~~~a~~~l~~~~~~lA~~~a~k~ 135 (156)
T PRK05759 86 IIEEAKAEAEAEAARIKAQAQAEIEQERKRAREELRKQVADLAVAGAEKI 135 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999888776655444443
No 47
>TIGR01144 ATP_synt_b ATP synthase, F0 subunit b. This model describes the F1/F0 ATP synthase b subunit in bacteria only. Scoring just below the trusted cutoff are the N-terminal domains of Mycobacterial b/delta fusion proteins and a subunit from an archaeon, Methanosarcina barkeri, in which the ATP synthase homolog differs in architecture and is not experimentally confirmed. This model helps resolve b from the related b' subunit. Within the family is an example from a sodium-translocating rather than proton-translocating ATP synthase.
Probab=98.94 E-value=3.4e-07 Score=72.99 Aligned_cols=119 Identities=19% Similarity=0.142 Sum_probs=97.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHH---HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133 81 LPIIMVEFLVLMFALDKIYYSPLGN---FMDERDNAIKEKLNSV----KDTSEEVKQLEEQAAAVMRAARAEISAALTKM 153 (213)
Q Consensus 81 l~~~lInFlIL~~iL~kfl~kpI~~---~Ld~R~~~I~~~l~eA----e~~~~ea~~~~~eae~~L~~Ar~ea~~Ii~~A 153 (213)
++.++|.|++|.+++|+.+.+-+.+ .+.+.-+..++...++ .++...+.+.+.++..++.+++.++..+.+++
T Consensus 2 ~i~Flil~~il~~~~~~pi~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~~~~l~~A~~ea~~i~~~a~~~a~~~~~~~ 81 (147)
T TIGR01144 2 LISFILLVWFCMKYVWPPLAKAIETRQKKIADGLASAERAKKEAALAQKKAQVILKEAKDEAQEIIENANKRGSEILEEA 81 (147)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667888899999999998877754 4444444444444444 46777788888999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133 154 KKETQLEVEQKLAVGRKKIEAELQEALANLERQKEDTIKSLDSQIA 199 (213)
Q Consensus 154 k~eAe~e~e~il~~Ak~e~e~~~~~A~~~I~~e~~~a~~eL~~ei~ 199 (213)
..+++.+.++++.+++.+++.+...+..+++.+.....-++-+.+.
T Consensus 82 ~~~a~~e~~~~~~~a~~~i~~e~~~a~~~l~~~~~~lA~~~a~kll 127 (147)
T TIGR01144 82 KAEAREEREKIKAQARAEIEAEKEQAREELRKQVADLSVLGAEKII 127 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999998877666655553
No 48
>PRK13455 F0F1 ATP synthase subunit B; Provisional
Probab=98.92 E-value=3.5e-07 Score=75.89 Aligned_cols=120 Identities=14% Similarity=0.192 Sum_probs=93.1
Q ss_pred chHHHHHHHHHHHHHHHHH-HHhhHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133 79 LTLPIIMVEFLVLMFALDK-IYYSPL-------GNFMDERDNAIKEKLNSVKDTSEEVKQLEEQAAAVMRAARAEISAAL 150 (213)
Q Consensus 79 ~tl~~~lInFlIL~~iL~k-fl~kpI-------~~~Ld~R~~~I~~~l~eAe~~~~ea~~~~~eae~~L~~Ar~ea~~Ii 150 (213)
|+.+.++|.+++|++++++ ++.+-+ .+-+++-++.-.+....-.+++.++.+.+.+++.++.+|+.++..+.
T Consensus 31 ~~~inflil~~iL~~f~~~~~v~~~L~~R~~~I~~~l~~Ae~~~~eA~~~l~e~e~~L~~A~~ea~~Ii~~A~~~a~~~~ 110 (184)
T PRK13455 31 VVTLAFLLFIGILVYFKVPGMIGGMLDKRAEGIRSELEEARALREEAQTLLASYERKQREVQEQADRIVAAAKDEAQAAA 110 (184)
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777777777777777544 444433 33444444444444444457888899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133 151 TKMKKETQLEVEQKLAVGRKKIEAELQEALANLERQKEDTIKSLDSQI 198 (213)
Q Consensus 151 ~~Ak~eAe~e~e~il~~Ak~e~e~~~~~A~~~I~~e~~~a~~eL~~ei 198 (213)
++.+.+++.+.++++++++.+++.+++++..+++.+..+..-++-+++
T Consensus 111 e~~~~~a~~ea~~~~~~A~~~I~~ek~~a~~~l~~~i~~lA~~~a~ki 158 (184)
T PRK13455 111 EQAKADLEASIARRLAAAEDQIASAEAAAVKAVRDRAVSVAVAAAADV 158 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999888876655554444
No 49
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=98.90 E-value=2.8e-07 Score=78.04 Aligned_cols=125 Identities=17% Similarity=0.158 Sum_probs=88.0
Q ss_pred CccchHHHHHHHHHHHHHHHHHHHhhHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133 76 DFNLTLPIIMVEFLVLMFALDKIYYSPLGNF-------MDERDNAIKEKLNSVKDTSEEVKQLEEQAAAVMRAARAEISA 148 (213)
Q Consensus 76 ~~n~tl~~~lInFlIL~~iL~kfl~kpI~~~-------Ld~R~~~I~~~l~eAe~~~~ea~~~~~eae~~L~~Ar~ea~~ 148 (213)
+|-|+++.++|.|++|..++|+.+.+-|.+. |++-++.-.+....-.+++.++.+.+.++..++.+++.+++.
T Consensus 55 ~l~w~~I~FliL~~lL~k~~~~pI~~vLe~R~~~I~~~L~~Ae~~k~eAe~~~~~ye~~L~~Ar~eA~~Ii~~Ar~ea~~ 134 (204)
T PRK09174 55 QLLWLAITFGLFYLFMSRVILPRIGGIIETRRDRIAQDLDQAARLKQEADAAVAAYEQELAQARAKAHSIAQAAREAAKA 134 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3667777777777777777777776655432 222222222223333466777778888888888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133 149 ALTKMKKETQLEVEQKLAVGRKKIEAELQEALANLERQKEDTIKSLDSQIAA 200 (213)
Q Consensus 149 Ii~~Ak~eAe~e~e~il~~Ak~e~e~~~~~A~~~I~~e~~~a~~eL~~ei~~ 200 (213)
..++.+.+++.+.++++++++++++++++.+..++..+..+...++-.++..
T Consensus 135 ~~e~~~~~a~~ea~~~l~~Ae~~I~~ek~~A~~el~~~a~e~A~~I~~Kllg 186 (204)
T PRK09174 135 KAEAERAAIEASLEKKLKEAEARIAAIKAKAMADVGSIAEETAAAIVEQLIG 186 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 8888888888888888888888888888888888888777777666666543
No 50
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=98.86 E-value=3.1e-07 Score=85.99 Aligned_cols=123 Identities=11% Similarity=0.079 Sum_probs=98.3
Q ss_pred CCccchHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH---HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133 75 FDFNLTLPIIMVEFLVLMFALDKIYYSPLGNFMDERDNA---IKEKLNSVK----DTSEEVKQLEEQAAAVMRAARAEIS 147 (213)
Q Consensus 75 ~~~n~tl~~~lInFlIL~~iL~kfl~kpI~~~Ld~R~~~---I~~~l~eAe----~~~~ea~~~~~eae~~L~~Ar~ea~ 147 (213)
..|-|+++.++|.|++|.+|+|+.+.+-+.+-=+.-.+. .++...+++ ++++.+.+.+.+++.++++|+.+++
T Consensus 2 ~t~i~qlInFlIl~~lL~kfl~~Pi~~~l~~R~~~I~~~L~eAe~a~~ea~~~~~~~e~~L~~Ak~ea~~Ii~~A~~~A~ 81 (445)
T PRK13428 2 STFIGQLIGFAVIVFLVWRFVVPPVRRLMAARQDTVRQQLAESATAADRLAEADQAHTKAVEDAKAEAARVVEEAREDAE 81 (445)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456688999999999999999999888776533333333 333333343 3556688999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133 148 AALTKMKKETQLEVEQKLAVGRKKIEAELQEALANLERQKEDTIKSLDSQ 197 (213)
Q Consensus 148 ~Ii~~Ak~eAe~e~e~il~~Ak~e~e~~~~~A~~~I~~e~~~a~~eL~~e 197 (213)
++.++...+++.+.++++++++.+++.+++++..+++.+.....-+.-.+
T Consensus 82 ~~~~~~~~~A~~ea~~i~~~a~~~Ie~ek~~a~~elr~ei~~lAv~~A~k 131 (445)
T PRK13428 82 RIAEQLRAQADAEAERIKVQGARQVQLLRAQLTRQLRLELGHESVRQAGE 131 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998887654444433
No 51
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=98.85 E-value=4.7e-07 Score=78.81 Aligned_cols=116 Identities=16% Similarity=0.151 Sum_probs=96.8
Q ss_pred CccchHHHHHHHHHHHHHHHHHHHhhHHHH---HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133 76 DFNLTLPIIMVEFLVLMFALDKIYYSPLGN---FMDERDNAIKEKLNSV----KDTSEEVKQLEEQAAAVMRAARAEISA 148 (213)
Q Consensus 76 ~~n~tl~~~lInFlIL~~iL~kfl~kpI~~---~Ld~R~~~I~~~l~eA----e~~~~ea~~~~~eae~~L~~Ar~ea~~ 148 (213)
.+-|+++.++|.|++|.+|+|+.+.+-+.+ .+.+.-+..++...+| ++++.+..++..+...++.+|+.++..
T Consensus 7 t~~~qiInFlILv~lL~~fl~kPi~~~l~eR~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~~ii~~A~~eA~~ 86 (250)
T PRK14474 7 TVVAQIINFLILVYLLRRFLYKPIIQVMKKRQQRIANRWQDAEQRQQEAGQEAERYRQKQQSLEQQRASFMAQAQEAADE 86 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455788889999999999999999887754 4444444444444555 467778888999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133 149 ALTKMKKETQLEVEQKLAVGRKKIEAELQEALANLERQKEDTI 191 (213)
Q Consensus 149 Ii~~Ak~eAe~e~e~il~~Ak~e~e~~~~~A~~~I~~e~~~a~ 191 (213)
+.++...+|+.+.++++.+++.+++.+++.+..+++.+.....
T Consensus 87 ~~~~il~~A~~ea~~~~~~a~~~ie~Ek~~a~~~L~~~v~~la 129 (250)
T PRK14474 87 QRQHLLNEAREDVATARDEWLEQLEREKQEFFKALQQQTGQQM 129 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999888766543
No 52
>PF00430 ATP-synt_B: ATP synthase B/B' CF(0); InterPro: IPR002146 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunits B and B' from the F0 complex in F-ATPases found in chloroplasts and in bacterial plasma membranes. The B subunits are part of the peripheral stalk that links the F1 and F0 complexes together, and which acts as a stator to prevent certain subunits from rotating with the central rotary element. The peripheral stalk differs in subunit composition between mitochondrial, chloroplast and bacterial F-ATPases. In bacterial and chloroplast F-ATPases, the peripheral stalk is composed of one copy of the delta subunit (homologous to OSCP in mitochondria), and two copies of subunit B in bacteria, or one copy each of subunits B and B' in chloroplasts and photosynthetic bacteria []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0045263 proton-transporting ATP synthase complex, coupling factor F(o); PDB: 1L2P_A 2KHK_A 1B9U_A.
Probab=98.85 E-value=1.9e-07 Score=72.60 Aligned_cols=120 Identities=18% Similarity=0.192 Sum_probs=90.0
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHhhHHHH---HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133 77 FNLTLPIIMVEFLVLMFALDKIYYSPLGN---FMDERDNAIKEKLNSV----KDTSEEVKQLEEQAAAVMRAARAEISAA 149 (213)
Q Consensus 77 ~n~tl~~~lInFlIL~~iL~kfl~kpI~~---~Ld~R~~~I~~~l~eA----e~~~~ea~~~~~eae~~L~~Ar~ea~~I 149 (213)
|-|.++.++|.|++|.+++++.+.+-+.+ .+++..+..++...++ .++...+.+++.+....+.+++.++..+
T Consensus 2 l~~~~i~Flil~~~l~~~~~~pi~~~l~~R~~~I~~~~~~a~~~~~ea~~~~~e~~~~l~~a~~ea~~i~~~a~~~a~~~ 81 (132)
T PF00430_consen 2 LFWQLINFLILFFLLNKFLYKPIKKFLDERKAKIQSELEEAEELKEEAEQLLAEYEEKLAEAREEAQEIIEEAKEEAEKE 81 (132)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHHHHCS--S-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34788889999999999999998776643 4444444444444444 4667777888889999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133 150 LTKMKKETQLEVEQKLAVGRKKIEAELQEALANLERQKEDTIKSLDS 196 (213)
Q Consensus 150 i~~Ak~eAe~e~e~il~~Ak~e~e~~~~~A~~~I~~e~~~a~~eL~~ 196 (213)
.++...+++.+.++++.+++.+++.....+..++..+......++-+
T Consensus 82 ~~~~~~ea~~~~~~~~~~a~~~i~~e~~~a~~~l~~~~~~la~~~a~ 128 (132)
T PF00430_consen 82 KEEILAEAEKEAERIIEQAEAEIEQEKEKAKKELRQEIVDLAVDIAE 128 (132)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999887765544433
No 53
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=98.84 E-value=7.2e-07 Score=74.05 Aligned_cols=123 Identities=20% Similarity=0.199 Sum_probs=100.5
Q ss_pred CccchHHHHHHHHHHHHHHHHHHHhhHHHH---HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133 76 DFNLTLPIIMVEFLVLMFALDKIYYSPLGN---FMDERDNAIKEKLNSV----KDTSEEVKQLEEQAAAVMRAARAEISA 148 (213)
Q Consensus 76 ~~n~tl~~~lInFlIL~~iL~kfl~kpI~~---~Ld~R~~~I~~~l~eA----e~~~~ea~~~~~eae~~L~~Ar~ea~~ 148 (213)
.+.|+++.++|.|++|..++|+.+-+-+.+ .+++--+..++...++ +++...+.+.+.++..++.+++.++++
T Consensus 33 q~~~~lI~F~iL~~ll~k~l~~PI~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~eye~~L~~Ar~EA~~ii~~A~~ea~~ 112 (181)
T PRK13454 33 QIFWLLVTLVAIYFVLTRVALPRIGAVLAERQGTITNDLAAAEELKQKAVEAEKAYNKALADARAEAQRIVAETRAEIQA 112 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356888888899999989988888776654 3333333344444444 467788889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133 149 ALTKMKKETQLEVEQKLAVGRKKIEAELQEALANLERQKEDTIKSLDSQI 198 (213)
Q Consensus 149 Ii~~Ak~eAe~e~e~il~~Ak~e~e~~~~~A~~~I~~e~~~a~~eL~~ei 198 (213)
+.++.+.+++.+.+.++++++++++..++++..++..+..+....+-..+
T Consensus 113 ~~~~~~~~A~~e~~~~~aea~~~I~~~k~~a~~~l~~~a~~lA~~i~~kL 162 (181)
T PRK13454 113 ELDVAIAKADAEIAAKAAESEKRIAEIRAGALESVEEVAKDTAEALVAAL 162 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999888877775554
No 54
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=98.83 E-value=6e-07 Score=77.78 Aligned_cols=116 Identities=13% Similarity=0.145 Sum_probs=93.9
Q ss_pred CccchHHHHHHHHHHHHHHHHHHHhhHHHH---HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133 76 DFNLTLPIIMVEFLVLMFALDKIYYSPLGN---FMDERDNAIKEKLNSV----KDTSEEVKQLEEQAAAVMRAARAEISA 148 (213)
Q Consensus 76 ~~n~tl~~~lInFlIL~~iL~kfl~kpI~~---~Ld~R~~~I~~~l~eA----e~~~~ea~~~~~eae~~L~~Ar~ea~~ 148 (213)
++-|+++.++|.|++|.+|+|+.+.+-+.+ .+.+.-+..++...++ .+++.++.+++.++..++.+|+.++..
T Consensus 7 t~~~qiInFlil~~lL~kfl~kPi~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~~i~~~A~~eA~~ 86 (246)
T TIGR03321 7 TVIAQLINFLILVWLLKRFLYRPILDAMDAREKKIAGELADADTKKREAEQERREYEEKNEELDQQREVLLTKAKEEAQA 86 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345788889999999999999998887754 3333333344444444 467777888889999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133 149 ALTKMKKETQLEVEQKLAVGRKKIEAELQEALANLERQKEDTI 191 (213)
Q Consensus 149 Ii~~Ak~eAe~e~e~il~~Ak~e~e~~~~~A~~~I~~e~~~a~ 191 (213)
+.++...+|+.+.++++.+++.+++.+++.+..+++.+.....
T Consensus 87 ~~~~i~~~A~~ea~~~~~~a~~~ie~E~~~a~~~l~~ei~~la 129 (246)
T TIGR03321 87 ERQRLLDEAREEADEIREKWQEALRREQAALSDELRRRTGAEV 129 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999988877765443
No 55
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=98.80 E-value=2.1e-06 Score=68.57 Aligned_cols=72 Identities=21% Similarity=0.195 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133 125 SEEVKQLEEQAAAVMRAARAEISAALTKMKKETQLEVEQKLAVGRKKIEAELQEALANLERQKEDTIKSLDS 196 (213)
Q Consensus 125 ~~ea~~~~~eae~~L~~Ar~ea~~Ii~~Ak~eAe~e~e~il~~Ak~e~e~~~~~A~~~I~~e~~~a~~eL~~ 196 (213)
...+.+.+.++.....+++.+++...++..++++.+.+..+.++..+++.++.++..+++.+.......+..
T Consensus 65 e~~l~~Ar~eA~~~~~~a~~~A~~ea~~~~~~A~~~~~~~~~~a~~~l~~e~~~~~~~l~~qv~~~~~~~~~ 136 (141)
T PRK08476 65 ETILKNAREEANKIRQKAIAKAKEEAEKKIEAKKAELESKYEAFAKQLANQKQELKEQLLSQMPEFKEALNA 136 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 333444444444444444444444444444444444445555555555555555555555554444444433
No 56
>TIGR03825 FliH_bacil flagellar assembly protein FliH. This bacillus clade of FliH proteins is not found by the Pfam FliH model pfam02108, but is closely related to the sequences identified by that model. Sequences identified by this model are observed in flagellar operons in an analogous position relative to other flagellar operon genes.
Probab=98.51 E-value=8.2e-07 Score=77.30 Aligned_cols=95 Identities=25% Similarity=0.301 Sum_probs=73.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH------------
Q 028133 118 LNSVKDTSEEVKQLEEQAAAVMRAARAEISAALTKMKKETQLEVEQK---LAVGRKKIEAELQEALAN------------ 182 (213)
Q Consensus 118 l~eAe~~~~ea~~~~~eae~~L~~Ar~ea~~Ii~~Ak~eAe~e~e~i---l~~Ak~e~e~~~~~A~~~------------ 182 (213)
+.++...++++.+...+++..+.+||.++++|+++|+.+++..++++ .++++.+.+++++.|+.+
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~l~~Ar~eA~~Ii~~A~~~a~~~~~~~~~~~~~~~~e~e~~~e~A~~eGy~eG~~~G~~e 104 (255)
T TIGR03825 25 VTDVPETEQELADEEQEFEQILEKAEAEAAQIIEQAEAQAAAIREQIEQERAQWEEERERLIQEAKQEGYEAGFQAGESE 104 (255)
T ss_pred eccCcccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44466666677777788888888888888888888888888887777 566777777777777665
Q ss_pred ---------------HHHHH---HHHHHHHHHHHHHHHHHHHHhhccC
Q 028133 183 ---------------LERQK---EDTIKSLDSQIAALSEEIVRKVLPV 212 (213)
Q Consensus 183 ---------------I~~e~---~~a~~eL~~ei~~lA~~ia~KiL~~ 212 (213)
++... .....+++.++.+|++.+++||++.
T Consensus 105 ~~~~~~~~i~~a~~i~~~a~~~~~~~l~~~e~el~~La~~iAeKIi~~ 152 (255)
T TIGR03825 105 ALSIYQSTIDEANAIVEEAKDDYEEKIESAQPLIIELACALAEKVIGV 152 (255)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44433 4557788999999999999999864
No 57
>COG2811 NtpF Archaeal/vacuolar-type H+-ATPase subunit H [Energy production and conversion]
Probab=98.17 E-value=0.00028 Score=53.93 Aligned_cols=95 Identities=18% Similarity=0.333 Sum_probs=80.7
Q ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
Q 028133 117 KLNSVK-DTSEEVKQLEEQAAAVMRAARAEISAALTKMKKETQLEVEQKLAVGRKKIEAELQEALANLERQKEDTIKS-L 194 (213)
Q Consensus 117 ~l~eAe-~~~~ea~~~~~eae~~L~~Ar~ea~~Ii~~Ak~eAe~e~e~il~~Ak~e~e~~~~~A~~~I~~e~~~a~~e-L 194 (213)
.+..++ ...+++++++++.++++.+|+.++.+|+.++..+++...++++..++++++.+......+-+.+....... -
T Consensus 11 eIk~aE~~ad~~IeeAkEe~~~~i~eAr~eareiieeaE~eA~~~~~e~l~~~~ee~e~ea~eI~~~ae~~~~~~~~ka~ 90 (108)
T COG2811 11 EIKKAEISADEEIEEAKEEAEQIIKEAREEAREIIEEAEEEAEKLAQEILEEAREEAEEEAEEILAEAEKEASAILSKAA 90 (108)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 344444 45677888999999999999999999999999999999999999999999988888888888888877764 6
Q ss_pred HHHHHHHHHHHHHhhcc
Q 028133 195 DSQIAALSEEIVRKVLP 211 (213)
Q Consensus 195 ~~ei~~lA~~ia~KiL~ 211 (213)
.+++...+++...++|.
T Consensus 91 ~~k~~~~a~~~~~~~l~ 107 (108)
T COG2811 91 EGKVVEAALSEFLAILE 107 (108)
T ss_pred hhHHHHHHHHHHHHHhc
Confidence 77888888888888775
No 58
>PRK08404 V-type ATP synthase subunit H; Validated
Probab=98.12 E-value=0.00047 Score=52.36 Aligned_cols=85 Identities=16% Similarity=0.280 Sum_probs=72.3
Q ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133 116 EKLNSVK-DTSEEVKQLEEQAAAVMRAARAEISAALTKMKKETQLEVEQKLAVGRKKIEAELQEALANLERQKEDTIKSL 194 (213)
Q Consensus 116 ~~l~eAe-~~~~ea~~~~~eae~~L~~Ar~ea~~Ii~~Ak~eAe~e~e~il~~Ak~e~e~~~~~A~~~I~~e~~~a~~eL 194 (213)
..+.+++ ++...+.+...++..++.+|+.++..+.+++..+|..+.++++..|+.+++.++..+..+++.+.......-
T Consensus 6 ~~ik~aE~~~e~~L~~A~~Ea~~Ii~~Ak~~A~k~~~eii~eA~~eA~~ile~Ak~eie~Ek~~a~~elk~eia~L~~~a 85 (103)
T PRK08404 6 KEIVKAEKEAEERIEKAKEEAKKIIRKAKEEAKKIEEEIIKKAEEEAQKLIEKKKKEGEEEAKKILEEGEKEIEELKVKA 85 (103)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445554 577778899999999999999999999999999999999999999999999999999999999988877666
Q ss_pred HHHHHH
Q 028133 195 DSQIAA 200 (213)
Q Consensus 195 ~~ei~~ 200 (213)
+..+..
T Consensus 86 ~~k~~~ 91 (103)
T PRK08404 86 EENFET 91 (103)
T ss_pred HHHHHH
Confidence 555544
No 59
>TIGR02926 AhaH ATP synthase archaeal, H subunit. he A1/A0 ATP synthase is homologous to the V-type (V1/V0, vacuolar) ATPase, but functions in the ATP synthetic direction as does the F1/F0 ATPase of bacteria. The hydrophilic A1 "stalk" complex (AhaABCDEFG) is the site of ATP generation and is coupled to the membrane-embedded proton translocating A0 complex. It is unclear precisely where AhaH fits into these complexes.
Probab=98.04 E-value=0.00021 Score=52.26 Aligned_cols=74 Identities=20% Similarity=0.248 Sum_probs=66.9
Q ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133 118 LNSVK-DTSEEVKQLEEQAAAVMRAARAEISAALTKMKKETQLEVEQKLAVGRKKIEAELQEALANLERQKEDTI 191 (213)
Q Consensus 118 l~eAe-~~~~ea~~~~~eae~~L~~Ar~ea~~Ii~~Ak~eAe~e~e~il~~Ak~e~e~~~~~A~~~I~~e~~~a~ 191 (213)
+..++ ++...+.+.+.++..++.+|+.++..+++++..+|+.+.+.++.+|+.+++.+...+..+++.+.....
T Consensus 4 ik~ae~~~~~~l~~A~~ea~~Ii~~A~~~A~~~~~~a~~~A~~ea~~ii~~Ak~ei~~e~~~a~~e~k~ev~~L~ 78 (85)
T TIGR02926 4 IKKAEEDAEELIEEAEEERKQRIAEAREEARELLEEAEEEASKLGEEIIKEAEEEIEKEAEKIREEGEKEIEAMK 78 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44454 567778899999999999999999999999999999999999999999999999999999999887654
No 60
>TIGR02499 HrpE_YscL_not type III secretion apparatus protein, HrpE/YscL family. This model is related to Pfam model pfam06188, but is broader. pfam06188 describes HrpE-like proteins, components of bacterial type III secretion systems primarily in bacteria that infect plants. This model includes also the homologous proteins of animal pathogens, such as YscL of Yersinia pestis. This model excludes the related protein FliH of the bacterial flagellar apparatus (see pfam02108)
Probab=98.00 E-value=0.00027 Score=56.94 Aligned_cols=82 Identities=23% Similarity=0.276 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 028133 131 LEEQAAAVMRAARAEISAALTKMKKETQLEVEQKLAVGRKKIEAELQEALANLERQKEDTIKSLDSQIAALSEEIVRKVL 210 (213)
Q Consensus 131 ~~~eae~~L~~Ar~ea~~Ii~~Ak~eAe~e~e~il~~Ak~e~e~~~~~A~~~I~~e~~~a~~eL~~ei~~lA~~ia~KiL 210 (213)
...++++++.+|+.++++|+++|+.++++.+++...++..+..+...........+..+....+..++.+++..+++|||
T Consensus 11 ~~~~A~~il~~A~~~a~~i~~~A~~~~e~~~~~g~~~G~~~g~~e~~~~~~~~~~~~~~~~~~~e~~l~~l~~~~~~kil 90 (166)
T TIGR02499 11 ALAQAQAILAAARQRAEAILADAEEEAEASRQLGYEQGLEQFWQEAAAQLAEWQQEAEQLEASLEERLAELVLQALEQIL 90 (166)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34488999999999999999999999999888888888888888777777888888889999999999999999999999
Q ss_pred cC
Q 028133 211 PV 212 (213)
Q Consensus 211 ~~ 212 (213)
+.
T Consensus 91 ~~ 92 (166)
T TIGR02499 91 GE 92 (166)
T ss_pred CC
Confidence 85
No 61
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=97.94 E-value=0.004 Score=50.66 Aligned_cols=64 Identities=3% Similarity=-0.051 Sum_probs=32.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133 79 LTLPIIMVEFLVLMFALDKIYYSPLGNFMDERD---NAIKEKLNSVKDTSEEVKQLEEQAAAVMRAA 142 (213)
Q Consensus 79 ~tl~~~lInFlIL~~iL~kfl~kpI~~~Ld~R~---~~I~~~l~eAe~~~~ea~~~~~eae~~L~~A 142 (213)
|+++.++|.|+++..++++.+.+-+.+.=+.-. +.-+....++++.+++.++...++.....+.
T Consensus 15 w~iI~FlILy~ll~kf~~ppI~~iLe~R~~~I~~~L~~Ae~~k~eAe~l~a~ye~~L~~Ar~eA~~I 81 (155)
T PRK06569 15 WLIVTFGLLYIFVYKFITPKAEEIFNNRQTNIQDNITQADTLTIEVEKLNKYYNEEIDKTNTEIDRL 81 (155)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666667777777777777766665544333323 3333334444444444444444433333333
No 62
>PF05405 Mt_ATP-synt_B: Mitochondrial ATP synthase B chain precursor (ATP-synt_B); InterPro: IPR008688 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunit B from the F0 complex in F-ATPases found in mitochondria of eukaryotes (metazoa, viridiplantae (plants and green algae), jakobidae and the malawimonadidae). The B subunits are part of the peripheral stalk that links the F1 and F0 complexes together, and which acts as a stator to prevent certain subunits from rotating with the central rotary element. The peripheral stalk differs in subunit composition between mitochondrial, chloroplast and bacterial F-ATPases. In mitochondria, the peripheral stalk is composed of one copy each of subunits OSCP (oligomycin sensitivity conferral protein), F6, B and D []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0000276 mitochondrial proton-transporting ATP synthase complex, coupling factor F(o); PDB: 2WSS_X 2CLY_D.
Probab=97.92 E-value=0.00066 Score=55.08 Aligned_cols=121 Identities=11% Similarity=0.194 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133 83 IIMVEFLVLMFALDKIYYSPLGNFMDERDNAIKEKLNSVKDTSEEVKQLEEQAAAVMRAARAEISAALTKMKKETQLEVE 162 (213)
Q Consensus 83 ~~lInFlIL~~iL~kfl~kpI~~~Ld~R~~~I~~~l~eAe~~~~ea~~~~~eae~~L~~Ar~ea~~Ii~~Ak~eAe~e~e 162 (213)
+.++.|+++++++++++.+++.+.+|+|.+.|.+.++.......+.-+..-+.......-......+.+-.+++...+.+
T Consensus 18 ~v~~~f~~f~~~~~k~~g~~i~~~ld~~~~~i~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~~ke~~~~~~e 97 (163)
T PF05405_consen 18 LVALCFIIFIIFIYKKFGPSIAEWLDERIQKIEDELNQSRNDHIKALKERIEQVKKEQSLVEGTKMLFEASKENVALQLE 97 (163)
T ss_dssp ----------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 35789999999999999999999999999999999999987777665555555556666555566666666655555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133 163 QKLAVGRKKIEAELQEALANLERQKEDTIKSLDSQIAALSE 203 (213)
Q Consensus 163 ~il~~Ak~e~e~~~~~A~~~I~~e~~~a~~eL~~ei~~lA~ 203 (213)
....+-+..+.++....-..+-......+...++.+.+-..
T Consensus 98 ~~~~~~~~~v~~evk~~Ld~~v~~e~~~r~~~Q~~l~~~v~ 138 (163)
T PF05405_consen 98 AFYREQQAAVAQEVKRRLDYWVEYEQSVRRREQKHLVKWVI 138 (163)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 54444444444444444444444444444445554444433
No 63
>PRK06328 type III secretion system protein; Validated
Probab=97.78 E-value=0.00059 Score=58.53 Aligned_cols=84 Identities=15% Similarity=0.149 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028133 129 KQLEEQAAAVMRAARAEISAALTKMKKETQLEVEQKLAVGRKKIEAELQEALANLERQKEDTIKSLDSQIAALSEEIVRK 208 (213)
Q Consensus 129 ~~~~~eae~~L~~Ar~ea~~Ii~~Ak~eAe~e~e~il~~Ak~e~e~~~~~A~~~I~~e~~~a~~eL~~ei~~lA~~ia~K 208 (213)
-....+++..|.+++.++.++++++..+++..+++..+++.++--..-.+....+..+......++.+++.+|++.+++|
T Consensus 25 ~~~~~~A~~il~~a~~~ae~i~~ea~~e~E~i~eeA~~eGy~eG~~~~~~~~~~l~~~~~~~~~~~e~~lv~Lal~ia~k 104 (223)
T PRK06328 25 FSALLDAQELLEKTKEDSEAYTQETHEECEKLREEAKNQGFKEGSKAWSKQLAFLEEETQKLREQVKEALVPLAIASVKK 104 (223)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666666666666666666666666666655555555554445555677778888889999999999999999
Q ss_pred hccC
Q 028133 209 VLPV 212 (213)
Q Consensus 209 iL~~ 212 (213)
|+++
T Consensus 105 Vi~~ 108 (223)
T PRK06328 105 IIGK 108 (223)
T ss_pred HHHH
Confidence 9874
No 64
>PRK03963 V-type ATP synthase subunit E; Provisional
Probab=97.77 E-value=0.0012 Score=55.03 Aligned_cols=82 Identities=17% Similarity=0.211 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133 126 EEVKQLEEQAAAVMRAARAEISAALTKMKKETQLEVEQKLAVGRKKIEAE----LQEALANLERQKEDTIKSLDSQIAAL 201 (213)
Q Consensus 126 ~ea~~~~~eae~~L~~Ar~ea~~Ii~~Ak~eAe~e~e~il~~Ak~e~e~~----~~~A~~~I~~e~~~a~~eL~~ei~~l 201 (213)
+-.++++.++++++++|+.++++++++++.+++.+.+.++..++.+++.. +..++.+++.++-.++.++.+++.+-
T Consensus 10 ~il~~A~~ea~~il~~A~~~a~~i~~~a~~~a~~~~~~i~~~a~~~ae~ek~r~~s~a~~e~r~~~l~ar~el~~~v~~~ 89 (198)
T PRK03963 10 EINREAEQKIEYILEEAQKEAEKIKEEARKRAESKAEWILRKAKTQAELEKQRIIANAKLEVRRKRLAVQEELISEVLEA 89 (198)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567788899999999999999999999999999999999888888744 44456666666666666666666665
Q ss_pred HHHHHH
Q 028133 202 SEEIVR 207 (213)
Q Consensus 202 A~~ia~ 207 (213)
+..-..
T Consensus 90 a~~~l~ 95 (198)
T PRK03963 90 VRERLA 95 (198)
T ss_pred HHHHHH
Confidence 554433
No 65
>PRK09098 type III secretion system protein HrpB; Validated
Probab=97.76 E-value=0.0011 Score=57.32 Aligned_cols=88 Identities=16% Similarity=0.220 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133 125 SEEVKQLEEQAAAVMRAARAEISAALTKMKKETQLEVEQKLAVGRKKIEAELQEALANLERQKEDTIKSLDSQIAALSEE 204 (213)
Q Consensus 125 ~~ea~~~~~eae~~L~~Ar~ea~~Ii~~Ak~eAe~e~e~il~~Ak~e~e~~~~~A~~~I~~e~~~a~~eL~~ei~~lA~~ 204 (213)
.+-+.+++++++.++.+|+.++++|+++|+.+.+..+++-..+...+...+.............+....++.++.+++..
T Consensus 42 ~~ila~Ar~~A~~Il~~A~~~A~~I~~~A~~e~e~~~~~Gy~eG~~~a~~e~~~~~~~~~~~~~~~~~~~e~~Lv~lv~~ 121 (233)
T PRK09098 42 DAVLAAARARAERIVAEARAQAEAILEAARREADRSARRGYAAGLRQALAEWHARGADHAFAERRAARRMRERLAEIVAA 121 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34466788888899999999999999999999888888888877777766655444445445556677799999999999
Q ss_pred HHHhhccC
Q 028133 205 IVRKVLPV 212 (213)
Q Consensus 205 ia~KiL~~ 212 (213)
+++|+++.
T Consensus 122 ~v~kiv~~ 129 (233)
T PRK09098 122 AVEQIVLG 129 (233)
T ss_pred HHHHHHHh
Confidence 99999864
No 66
>PRK01005 V-type ATP synthase subunit E; Provisional
Probab=97.75 E-value=0.0021 Score=54.70 Aligned_cols=72 Identities=18% Similarity=0.350 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133 125 SEEVKQLEEQAAAVMRAARAEISAALTKMKKETQLEVEQKLAVGRKKIEAELQEALANLERQKEDTIKSLDSQIAA 200 (213)
Q Consensus 125 ~~ea~~~~~eae~~L~~Ar~ea~~Ii~~Ak~eAe~e~e~il~~Ak~e~e~~~~~A~~~I~~e~~~a~~eL~~ei~~ 200 (213)
++.+++.+.+++.++.+|+.+++.|+++|+.++ +.++++++.+++.+..++...++...+++.-+++.++.+
T Consensus 19 ~eiL~eA~~eA~~Il~eAk~~Ae~Ii~eA~~EA----e~ii~~A~~eae~ek~r~~s~a~l~~R~~~l~aKqevi~ 90 (207)
T PRK01005 19 EETLKPAEEEAGAIVHNAKEQAKRIIAEAQEEA----EKIIRSAEETADQKLKQGESALVQAGKRSLESLKQAVEN 90 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667777778888888888877777777654 455555555555555566555555555555555555544
No 67
>PRK06937 type III secretion system protein; Reviewed
Probab=97.62 E-value=0.0021 Score=54.16 Aligned_cols=84 Identities=18% Similarity=0.170 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028133 129 KQLEEQAAAVMRAARAEISAALTKMKKETQLEVEQKLAVGRKKIEAELQEALANLERQKEDTIKSLDSQIAALSEEIVRK 208 (213)
Q Consensus 129 ~~~~~eae~~L~~Ar~ea~~Ii~~Ak~eAe~e~e~il~~Ak~e~e~~~~~A~~~I~~e~~~a~~eL~~ei~~lA~~ia~K 208 (213)
-...-++++++++||.++++|+++|++..+..+++-.++..++...+..+...+...+..+...++.+++.++++.+++|
T Consensus 26 ~~~~~~A~~il~~A~~~A~~i~~~A~~~~e~~~~~Gy~~G~~~a~~e~~e~l~~~~~~~~~~~~~~e~~l~~Lvl~ia~k 105 (204)
T PRK06937 26 YQSLLSAEELVEAARQRAEEIEAEAQEVYEQQKQLGYQAGLDEARTEQAELILETVLQCQEFYRGVEQQMSEVVLEAVRK 105 (204)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566778888888888888888888888877777777777766665544444445556677889999999999999999
Q ss_pred hccC
Q 028133 209 VLPV 212 (213)
Q Consensus 209 iL~~ 212 (213)
|+++
T Consensus 106 il~~ 109 (204)
T PRK06937 106 ILND 109 (204)
T ss_pred HHhc
Confidence 9974
No 68
>PRK01558 V-type ATP synthase subunit E; Provisional
Probab=97.58 E-value=0.0024 Score=53.69 Aligned_cols=75 Identities=19% Similarity=0.234 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133 128 VKQLEEQAAAVMRAARAEISAALTKMKKETQLEVEQKLAVGRKKIEAELQEALANLERQKEDTIKSLDSQIAALSEEIV 206 (213)
Q Consensus 128 a~~~~~eae~~L~~Ar~ea~~Ii~~Ak~eAe~e~e~il~~Ak~e~e~~~~~A~~~I~~e~~~a~~eL~~ei~~lA~~ia 206 (213)
.++...+++.++.+|+.++++|+++|+++++.. +.+|+.+++.............+++..-.+++.+.+......
T Consensus 17 ~eeA~~eA~~Ii~eA~~eAe~Ii~eA~~eAe~i----~~kAe~ea~~~~~~~~saa~l~~r~~ll~~k~~i~~~~~~~~ 91 (198)
T PRK01558 17 LEEAERLANEIILEAKEEAEEIIAKAEEEAKEL----KAKAEKEANDYKRHALEASRQAGRDLLISFEKSIKSLFKAAL 91 (198)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666666666666666666666665433 444555555555555555555555555555555544333333
No 69
>PF06188 HrpE: HrpE/YscL/FliH and V-type ATPase subunit E; InterPro: IPR009335 This family consists of several bacterial HrpE proteins, which are believed to function on the type III secretion system, specifically the secretion of HrpZ (harpinPss) []. This family also includes V-type proton ATPase subunit E proteins. This subunit appears to form a tight interaction with subunit G in the F0 complex. Subunits E and G may act together as stators to prevent certain subunits from rotating with the central rotary element []. PF01991 from PFAM also contains V-type ATPase subunit E proteins. There is an evolutionary link between type III secretion systems and membrane-associated proton translocating ATPases [].
Probab=97.54 E-value=0.0034 Score=52.66 Aligned_cols=82 Identities=18% Similarity=0.301 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 028133 131 LEEQAAAVMRAARAEISAALTKMKKETQLEVEQKLAVGRKKIEAELQEALANLERQKEDTIKSLDSQIAALSEEIVRKVL 210 (213)
Q Consensus 131 ~~~eae~~L~~Ar~ea~~Ii~~Ak~eAe~e~e~il~~Ak~e~e~~~~~A~~~I~~e~~~a~~eL~~ei~~lA~~ia~KiL 210 (213)
...+++.++.+|+.++++|+.+|+.+++...+....++.++..+....-......+.+.....+.+.+..+..+..+++|
T Consensus 28 ~~~~a~~IL~~A~~qA~~Il~~Ae~eAe~l~~~a~e~a~~~~~q~a~~ll~~~~~~~e~l~~~l~~~~~~ll~~al~~lL 107 (191)
T PF06188_consen 28 AQQQAREILEDARQQAEQILQQAEEEAEALLEQAYEQAEAQFWQQANALLQEWQQQREQLLQQLEEQAEELLSQALERLL 107 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888888888888888888888888888555555555555555555566677777777788888888888888877
Q ss_pred cC
Q 028133 211 PV 212 (213)
Q Consensus 211 ~~ 212 (213)
.+
T Consensus 108 ~e 109 (191)
T PF06188_consen 108 DE 109 (191)
T ss_pred Hc
Confidence 53
No 70
>COG2811 NtpF Archaeal/vacuolar-type H+-ATPase subunit H [Energy production and conversion]
Probab=97.46 E-value=0.0086 Score=45.84 Aligned_cols=79 Identities=19% Similarity=0.257 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133 125 SEEVKQLEEQAAAVMRAARAEISAALTKMKKETQLEVEQKLAVGRKKIEAELQEALANLERQKEDTIKSLDSQIAALSE 203 (213)
Q Consensus 125 ~~ea~~~~~eae~~L~~Ar~ea~~Ii~~Ak~eAe~e~e~il~~Ak~e~e~~~~~A~~~I~~e~~~a~~eL~~ei~~lA~ 203 (213)
..++.+....+...+.+|+.++.+++.+|+.++....++.-.+|++..+..++.++.+++.+..+...+-+.++.++..
T Consensus 9 l~eIk~aE~~ad~~IeeAkEe~~~~i~eAr~eareiieeaE~eA~~~~~e~l~~~~ee~e~ea~eI~~~ae~~~~~~~~ 87 (108)
T COG2811 9 LREIKKAEISADEEIEEAKEEAEQIIKEAREEAREIIEEAEEEAEKLAQEILEEAREEAEEEAEEILAEAEKEASAILS 87 (108)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555666666666666666666666666666666666666666666666666666555555555555544
No 71
>PRK03963 V-type ATP synthase subunit E; Provisional
Probab=97.35 E-value=0.005 Score=51.27 Aligned_cols=72 Identities=15% Similarity=0.246 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133 126 EEVKQLEEQAAAVMRAARAEIS----AALTKMKKETQLEVEQKLAVGRKKIEAELQEALANLERQKEDTIKSLDSQIAA 200 (213)
Q Consensus 126 ~ea~~~~~eae~~L~~Ar~ea~----~Ii~~Ak~eAe~e~e~il~~Ak~e~e~~~~~A~~~I~~e~~~a~~eL~~ei~~ 200 (213)
+..++++.+++.++++++.++. .++.+++.+++.++.+++..++.++...+-.++.++ ..++..+++.++..
T Consensus 21 ~il~~A~~~a~~i~~~a~~~a~~~~~~i~~~a~~~ae~ek~r~~s~a~~e~r~~~l~ar~el---~~~v~~~a~~~l~~ 96 (198)
T PRK03963 21 YILEEAQKEAEKIKEEARKRAESKAEWILRKAKTQAELEKQRIIANAKLEVRRKRLAVQEEL---ISEVLEAVRERLAE 96 (198)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHh
Confidence 3344444445555444444444 666777777777777777777777777776666665 33333444444443
No 72
>PRK01005 V-type ATP synthase subunit E; Provisional
Probab=97.34 E-value=0.0032 Score=53.49 Aligned_cols=69 Identities=14% Similarity=0.192 Sum_probs=51.8
Q ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133 118 LNSVK-DTSEEVKQLEEQAAAVMRAARAEISAALTKMKKETQLEVEQKLAVGRKKIEAELQEALANLERQ 186 (213)
Q Consensus 118 l~eAe-~~~~ea~~~~~eae~~L~~Ar~ea~~Ii~~Ak~eAe~e~e~il~~Ak~e~e~~~~~A~~~I~~e 186 (213)
+.+|+ +..+-+.+++.+++.++.+|+.+++.|+++++.+++.++.++...++-...+.+..+++++..+
T Consensus 22 L~eA~~eA~~Il~eAk~~Ae~Ii~eA~~EAe~ii~~A~~eae~ek~r~~s~a~l~~R~~~l~aKqevi~~ 91 (207)
T PRK01005 22 LKPAEEEAGAIVHNAKEQAKRIIAEAQEEAEKIIRSAEETADQKLKQGESALVQAGKRSLESLKQAVENK 91 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33443 3445566777777888888888888888888888888888888888877777777777776554
No 73
>PF03179 V-ATPase_G: Vacuolar (H+)-ATPase G subunit; InterPro: IPR005124 This family represents the eukaryotic vacuolar (H+)-ATPase (V-ATPase) G subunit. V-ATPases generate an acidic environment in several intracellular compartments. Correspondingly, they are found as membrane-attached proteins in several organelles. They are also found in the plasma membranes of some specialised cells. V-ATPases consist of peripheral (V1) and membrane integral (V0) heteromultimeric complexes. The G subunit is part of the V1 subunit, but is also thought to be strongly attached to the V0 complex. It may be involved in the coupling of ATP degradation to H+ translocation.; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015992 proton transport, 0016471 vacuolar proton-transporting V-type ATPase complex; PDB: 2KWY_A 2K88_A.
Probab=97.22 E-value=0.013 Score=44.15 Aligned_cols=89 Identities=18% Similarity=0.254 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133 123 DTSEEVKQLEEQAAAVMRAARAEISAALTKMKKETQLEVEQKLAVGRKKIEAELQEALANLERQKEDTIKSLDSQIAALS 202 (213)
Q Consensus 123 ~~~~ea~~~~~eae~~L~~Ar~ea~~Ii~~Ak~eAe~e~e~il~~Ak~e~e~~~~~A~~~I~~e~~~a~~eL~~ei~~lA 202 (213)
++..-+++++.+....|.+|+.++...++..+.+.+.++.....+...+.+........+...+.............+..
T Consensus 15 eA~~iV~~Ar~~r~~~lk~Ak~eA~~ei~~~r~~~e~~~~~~~~~~~~~~~~~~~~l~~et~~~i~~i~~~~~~~~~~vv 94 (105)
T PF03179_consen 15 EAQEIVEEARKEREQRLKQAKEEAEKEIEEFRAEAEEEFKEKEAEAEGEAEQEAEELEKETEEKIEEIKKSASKNKDKVV 94 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-S------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 45555666666667777777777777777777777777777766666666666666666666666666666666666777
Q ss_pred HHHHHhhcc
Q 028133 203 EEIVRKVLP 211 (213)
Q Consensus 203 ~~ia~KiL~ 211 (213)
..+.+.|+.
T Consensus 95 ~~ll~~V~~ 103 (105)
T PF03179_consen 95 DMLLSRVCD 103 (105)
T ss_dssp HHHHH----
T ss_pred HHHHHHHcC
Confidence 777776654
No 74
>PRK02292 V-type ATP synthase subunit E; Provisional
Probab=97.18 E-value=0.019 Score=47.49 Aligned_cols=72 Identities=11% Similarity=0.176 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133 129 KQLEEQAAAVMRAARAEISAALTKMKKETQLEVEQKLAVGRKKIEAELQEALANLERQKEDTIKSLDSQIAA 200 (213)
Q Consensus 129 ~~~~~eae~~L~~Ar~ea~~Ii~~Ak~eAe~e~e~il~~Ak~e~e~~~~~A~~~I~~e~~~a~~eL~~ei~~ 200 (213)
++.+.+.++++.+|+.++.+|+++|+++++...+++..+++++.+....++......+.+...-..+.++.+
T Consensus 12 ~~a~~e~~~I~~ea~~~~~~i~~ea~~~a~~i~~~~~~~a~~e~~~~~~r~~s~a~~~~rr~~L~~r~~~l~ 83 (188)
T PRK02292 12 DEARARASEIRAEADEEAEEIIAEAEADAEEILEDREAEAEREIEQLREQELSSAKLEAKRERLNARKEVLE 83 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667777777777777777777777777777777777777777776666555555555443333333333
No 75
>TIGR03825 FliH_bacil flagellar assembly protein FliH. This bacillus clade of FliH proteins is not found by the Pfam FliH model pfam02108, but is closely related to the sequences identified by that model. Sequences identified by this model are observed in flagellar operons in an analogous position relative to other flagellar operon genes.
Probab=97.14 E-value=0.022 Score=49.57 Aligned_cols=89 Identities=19% Similarity=0.259 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH-----------------------HHHHH
Q 028133 123 DTSEEVKQLEEQAAAVMRAARAEISAALTKM---KKETQLEVEQKLAVGRKK-----------------------IEAEL 176 (213)
Q Consensus 123 ~~~~ea~~~~~eae~~L~~Ar~ea~~Ii~~A---k~eAe~e~e~il~~Ak~e-----------------------~e~~~ 176 (213)
+....+.+++.++..++.+|+.+++++++++ ..+++.+.++++.+|+++ +..++
T Consensus 41 ~~~~~l~~Ar~eA~~Ii~~A~~~a~~~~~~~~~~~~~~~~e~e~~~e~A~~eGy~eG~~~G~~e~~~~~~~~i~~a~~i~ 120 (255)
T TIGR03825 41 EFEQILEKAEAEAAQIIEQAEAQAAAIREQIEQERAQWEEERERLIQEAKQEGYEAGFQAGESEALSIYQSTIDEANAIV 120 (255)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444456666666666666666666666655 355555556666655555 55667
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 028133 177 QEALANLERQKEDTIKSLDSQIAALSEEIVRKVLP 211 (213)
Q Consensus 177 ~~A~~~I~~e~~~a~~eL~~ei~~lA~~ia~KiL~ 211 (213)
..++............++-+-+..++-.+..+-|.
T Consensus 121 ~~a~~~~~~~l~~~e~el~~La~~iAeKIi~~el~ 155 (255)
T TIGR03825 121 EEAKDDYEEKIESAQPLIIELACALAEKVIGVSLA 155 (255)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 78888888888888888888888888888877653
No 76
>PRK01194 V-type ATP synthase subunit E; Provisional
Probab=97.13 E-value=0.015 Score=48.52 Aligned_cols=61 Identities=13% Similarity=0.025 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133 129 KQLEEQAAAVMRAARAEISAALTKMKKETQLEVEQKLAVGRKKIEAELQEALANLERQKED 189 (213)
Q Consensus 129 ~~~~~eae~~L~~Ar~ea~~Ii~~Ak~eAe~e~e~il~~Ak~e~e~~~~~A~~~I~~e~~~ 189 (213)
+++..+++.++.+|+.++.+|+++++.+++...+.+...++.+++...++.....+-+.+.
T Consensus 12 ~ea~~~a~~I~~eA~~~aeei~~ea~~~a~~~~~~~~~k~~~e~~~~~~riis~A~Le~R~ 72 (185)
T PRK01194 12 KSREEKKKEINDEYSKRIEKLEKECDSKIQSIKEYYEKKMRAEISRLKKSIIDKANIEARS 72 (185)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 4567778888888888888888888888888888888888888876666555544444443
No 77
>PRK06669 fliH flagellar assembly protein H; Validated
Probab=97.13 E-value=0.042 Score=48.38 Aligned_cols=88 Identities=19% Similarity=0.273 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Q 028133 124 TSEEVKQLEEQAAAVMRAARAEISAALTKMKKETQLEV-EQKLAVGRKKIEAELQEALA---NLERQKEDTIKSLDSQIA 199 (213)
Q Consensus 124 ~~~ea~~~~~eae~~L~~Ar~ea~~Ii~~Ak~eAe~e~-e~il~~Ak~e~e~~~~~A~~---~I~~e~~~a~~eL~~ei~ 199 (213)
+...+.+++.+++....+++.++.++++++++++..+- ++..+++..+.+..+..... .+..........+..++.
T Consensus 90 a~~~l~~a~~q~e~~~~ea~~e~e~~~~~a~~eGy~eG~~~g~~e~~~e~~~~~~~l~~~~~~l~~~~~~~l~~~e~elv 169 (281)
T PRK06669 90 ASSIIEKLQMQIEREQEEWEEELERLIEEAKAEGYEEGYEKGREEGLEEVRELIEQLNKIIEKLIKKREEILESSEEEIV 169 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555555555555555555554332 22233333333333333332 234455566677889999
Q ss_pred HHHHHHHHhhcc
Q 028133 200 ALSEEIVRKVLP 211 (213)
Q Consensus 200 ~lA~~ia~KiL~ 211 (213)
++++.++++|++
T Consensus 170 ~Lal~iaekvi~ 181 (281)
T PRK06669 170 ELALDIAKKVIK 181 (281)
T ss_pred HHHHHHHHHHHH
Confidence 999999999985
No 78
>PF01991 vATP-synt_E: ATP synthase (E/31 kDa) subunit; InterPro: IPR002842 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents subunit E from the V1 and A1 complexes of V- and A-ATPases, respectively. Subunit E appears to form a tight interaction with subunit G in the F0 complex, which together may act as stators to prevent certain subunits from rotating with the central rotary element, much in the same way as the F0 complex subunit B does in F-ATPases []. In addition to its key role in stator structure, subunit E appears to have a role in mediating interactions with putative regulatory subunits []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0033178 proton-transporting two-sector ATPase complex, catalytic domain; PDB: 3LG8_A 2KK7_A 4DT0_A 2DM9_A 2DMA_A 3V6I_A 3K5B_A 3J0J_L 2KZ9_A.
Probab=97.13 E-value=0.019 Score=47.20 Aligned_cols=78 Identities=19% Similarity=0.269 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133 129 KQLEEQAAAVMRAARAEISAALTKMKKETQLEVEQKLAVGRKKIEAELQEALANLERQKEDTIKSLDSQIAALSEEIV 206 (213)
Q Consensus 129 ~~~~~eae~~L~~Ar~ea~~Ii~~Ak~eAe~e~e~il~~Ak~e~e~~~~~A~~~I~~e~~~a~~eL~~ei~~lA~~ia 206 (213)
++++.++++++.+|+.+++.++++++.+++...+..+..++.+++..+.......+.+.....-..+.++.+-..+-+
T Consensus 4 ~eA~~ka~~I~~eA~~e~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~r~~~l~~k~~~i~~v~~~~ 81 (198)
T PF01991_consen 4 EEAQEKAEEIIAEAQEEAEKILEEAEEEAEKEIEEIIEKAEKEAEQEKEREISKAELEARRELLEAKQEIIDEVFEEV 81 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467788888899999999999999999999998888888888888777777776666666655555555444444333
No 79
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=97.07 E-value=0.022 Score=48.00 Aligned_cols=6 Identities=0% Similarity=0.285 Sum_probs=2.2
Q ss_pred HHHHHH
Q 028133 93 FALDKI 98 (213)
Q Consensus 93 ~iL~kf 98 (213)
+++.++
T Consensus 14 ~~~G~~ 19 (201)
T PF12072_consen 14 IGIGYL 19 (201)
T ss_pred HHHHHH
Confidence 333333
No 80
>PF03179 V-ATPase_G: Vacuolar (H+)-ATPase G subunit; InterPro: IPR005124 This family represents the eukaryotic vacuolar (H+)-ATPase (V-ATPase) G subunit. V-ATPases generate an acidic environment in several intracellular compartments. Correspondingly, they are found as membrane-attached proteins in several organelles. They are also found in the plasma membranes of some specialised cells. V-ATPases consist of peripheral (V1) and membrane integral (V0) heteromultimeric complexes. The G subunit is part of the V1 subunit, but is also thought to be strongly attached to the V0 complex. It may be involved in the coupling of ATP degradation to H+ translocation.; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015992 proton transport, 0016471 vacuolar proton-transporting V-type ATPase complex; PDB: 2KWY_A 2K88_A.
Probab=96.94 E-value=0.027 Score=42.43 Aligned_cols=77 Identities=22% Similarity=0.320 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133 127 EVKQLEEQAAAVMRAARAEISAALTKMKKETQLEVEQKLAVGRKKIEAELQEALANLERQKEDTIKSLDSQIAALSE 203 (213)
Q Consensus 127 ea~~~~~eae~~L~~Ar~ea~~Ii~~Ak~eAe~e~e~il~~Ak~e~e~~~~~A~~~I~~e~~~a~~eL~~ei~~lA~ 203 (213)
++-++..++..++.+|+.+...++.+|+.+|+.+.+....+...+.....................+...++..+-.
T Consensus 8 ~Ll~AE~eA~~iV~~Ar~~r~~~lk~Ak~eA~~ei~~~r~~~e~~~~~~~~~~~~~~~~~~~~l~~et~~~i~~i~~ 84 (105)
T PF03179_consen 8 QLLEAEKEAQEIVEEARKEREQRLKQAKEEAEKEIEEFRAEAEEEFKEKEAEAEGEAEQEAEELEKETEEKIEEIKK 84 (105)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-S------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHH
Confidence 45678889999999999999999999999999999999999888888777777766666666666665555555433
No 81
>PRK01558 V-type ATP synthase subunit E; Provisional
Probab=96.92 E-value=0.18 Score=42.37 Aligned_cols=76 Identities=16% Similarity=0.126 Sum_probs=62.5
Q ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133 119 NSVK-DTSEEVKQLEEQAAAVMRAARAEISAALTKMKKETQLEVEQKLAVGRKKIEAELQEALANLERQKEDTIKSL 194 (213)
Q Consensus 119 ~eAe-~~~~ea~~~~~eae~~L~~Ar~ea~~Ii~~Ak~eAe~e~e~il~~Ak~e~e~~~~~A~~~I~~e~~~a~~eL 194 (213)
++|+ +...-+.+++++++.++.+|+.++++|+.+++.+++....++...++....+.+-.++++|.........++
T Consensus 18 eeA~~eA~~Ii~eA~~eAe~Ii~eA~~eAe~i~~kAe~ea~~~~~~~~saa~l~~r~~ll~~k~~i~~~~~~~~~~~ 94 (198)
T PRK01558 18 EEAERLANEIILEAKEEAEEIIAKAEEEAKELKAKAEKEANDYKRHALEASRQAGRDLLISFEKSIKSLFKAALKDE 94 (198)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444 455567788999999999999999999999999999999999999999999999988888865554444443
No 82
>PF01991 vATP-synt_E: ATP synthase (E/31 kDa) subunit; InterPro: IPR002842 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents subunit E from the V1 and A1 complexes of V- and A-ATPases, respectively. Subunit E appears to form a tight interaction with subunit G in the F0 complex, which together may act as stators to prevent certain subunits from rotating with the central rotary element, much in the same way as the F0 complex subunit B does in F-ATPases []. In addition to its key role in stator structure, subunit E appears to have a role in mediating interactions with putative regulatory subunits []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0033178 proton-transporting two-sector ATPase complex, catalytic domain; PDB: 3LG8_A 2KK7_A 4DT0_A 2DM9_A 2DMA_A 3V6I_A 3K5B_A 3J0J_L 2KZ9_A.
Probab=96.76 E-value=0.03 Score=45.99 Aligned_cols=48 Identities=19% Similarity=0.270 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133 140 RAARAEISAALTKMKKETQLEVEQKLAVGRKKIEAELQEALANLERQK 187 (213)
Q Consensus 140 ~~Ar~ea~~Ii~~Ak~eAe~e~e~il~~Ak~e~e~~~~~A~~~I~~e~ 187 (213)
++|+.++++|+++|+.+++...+++..+++...+.....++.+++..+
T Consensus 4 ~eA~~ka~~I~~eA~~e~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 51 (198)
T PF01991_consen 4 EEAQEKAEEIIAEAQEEAEKILEEAEEEAEKEIEEIIEKAEKEAEQEK 51 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444444444444443333
No 83
>PF06635 NolV: Nodulation protein NolV; InterPro: IPR010586 This family consists of several nodulation protein NolV sequences from different Rhizobium species []. The function of this family is unclear.; GO: 0009877 nodulation
Probab=96.66 E-value=0.056 Score=45.90 Aligned_cols=81 Identities=26% Similarity=0.254 Sum_probs=68.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 028133 132 EEQAAAVMRAARAEISAALTKMKKETQLEVEQKLAVGRKKIEAELQEALANLERQKEDTIKSLDSQIAALSEEIVRKVLP 211 (213)
Q Consensus 132 ~~eae~~L~~Ar~ea~~Ii~~Ak~eAe~e~e~il~~Ak~e~e~~~~~A~~~I~~e~~~a~~eL~~ei~~lA~~ia~KiL~ 211 (213)
-.+..+.+..|+.++++|++.++..-+.++.+=..+++.+..+.......+--.+....+..|.+++.+|++.++++|||
T Consensus 29 w~da~~~~aAA~~~A~~ir~~Ar~ayE~~rarGyeeG~~~g~e~~A~llaqa~a~v~r~~a~LE~~l~~LVl~~Vr~ILg 108 (207)
T PF06635_consen 29 WRDAAAFLAAARREAQRIREWARAAYERERARGYEEGRRAGAEQAARLLAQATAEVARYLAGLEQELAELVLEIVRKILG 108 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45667788999999999999999999999988888888777666666666666677778888999999999999999998
Q ss_pred C
Q 028133 212 V 212 (213)
Q Consensus 212 ~ 212 (213)
.
T Consensus 109 ~ 109 (207)
T PF06635_consen 109 E 109 (207)
T ss_pred c
Confidence 5
No 84
>COG1390 NtpE Archaeal/vacuolar-type H+-ATPase subunit E [Energy production and conversion]
Probab=96.42 E-value=0.12 Score=43.53 Aligned_cols=78 Identities=22% Similarity=0.250 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133 130 QLEEQAAAVMRAARAEISAALTKMKKETQLEVEQKLAVGRKKIEAELQEALANLERQKEDTIKSLDSQIAALSEEIVR 207 (213)
Q Consensus 130 ~~~~eae~~L~~Ar~ea~~Ii~~Ak~eAe~e~e~il~~Ak~e~e~~~~~A~~~I~~e~~~a~~eL~~ei~~lA~~ia~ 207 (213)
++.++++.++.+|+.++..|.++++..++...+.++..++++++....++......+.....-+.+.++.+-..+.+.
T Consensus 14 ~a~eeak~I~~eA~~eae~i~~ea~~~~~~~~~~~~~~~~~ea~~~~~~iis~A~le~r~~~Le~~ee~l~~~~~~~~ 91 (194)
T COG1390 14 EAEEEAEEILEEAREEAEKIKEEAKREAEEAIEEILRKAEKEAERERQRIISSALLEARRKLLEAKEEILESVFEAVE 91 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777777778888888888888888888888888777777777776666665555554444444444444444333
No 85
>KOG1772 consensus Vacuolar H+-ATPase V1 sector, subunit G [Energy production and conversion]
Probab=96.26 E-value=0.28 Score=37.40 Aligned_cols=80 Identities=25% Similarity=0.330 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH
Q 028133 131 LEEQAAAVMRAARAEISAALTKMKKETQLEVEQKLAVGRKKIEAELQEA-------LANLERQKEDTIKSLDSQIAALSE 203 (213)
Q Consensus 131 ~~~eae~~L~~Ar~ea~~Ii~~Ak~eAe~e~e~il~~Ak~e~e~~~~~A-------~~~I~~e~~~a~~eL~~ei~~lA~ 203 (213)
+..++..++.+||.....-+.+|+.+|+.+.++...+-+.+.......+ ..+++.+...-..+|+..+.....
T Consensus 14 AEK~A~e~V~~ARk~K~~RLKQAKeEA~~Eie~yr~qrE~efk~ke~~~~G~~~~~~~~~e~~t~~ki~~lk~~~~k~~~ 93 (108)
T KOG1772|consen 14 AEKRAAEKVEEARKRKLRRLKQAKEEAEKEIEEYRSQREKEFKEKESAASGSQGALEKRLEQETDDKIAGLKTSAQKNSD 93 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 3444455555555555555555555555555555544444444333333 455666666666667766666666
Q ss_pred HHHHhhc
Q 028133 204 EIVRKVL 210 (213)
Q Consensus 204 ~ia~KiL 210 (213)
+++..||
T Consensus 94 ~Vv~~LL 100 (108)
T KOG1772|consen 94 DVVDMLL 100 (108)
T ss_pred HHHHHHH
Confidence 6666555
No 86
>COG1390 NtpE Archaeal/vacuolar-type H+-ATPase subunit E [Energy production and conversion]
Probab=96.23 E-value=0.15 Score=42.92 Aligned_cols=36 Identities=22% Similarity=0.224 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133 149 ALTKMKKETQLEVEQKLAVGRKKIEAELQEALANLE 184 (213)
Q Consensus 149 Ii~~Ak~eAe~e~e~il~~Ak~e~e~~~~~A~~~I~ 184 (213)
+...++++++..+.+++..|..++.+..-.++.++-
T Consensus 48 ~~~~~~~ea~~~~~~iis~A~le~r~~~Le~~ee~l 83 (194)
T COG1390 48 ILRKAEKEAERERQRIISSALLEARRKLLEAKEEIL 83 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455566666666666666666665555555543
No 87
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=96.16 E-value=0.15 Score=51.22 Aligned_cols=72 Identities=11% Similarity=0.107 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133 105 NFMDERDNAIKEKLNSVKDTSEEVKQLEEQAAAVMRAARAEISAALTKMKKETQLEVEQKLAVGRKKIEAEL 176 (213)
Q Consensus 105 ~~Ld~R~~~I~~~l~eAe~~~~ea~~~~~eae~~L~~Ar~ea~~Ii~~Ak~eAe~e~e~il~~Ak~e~e~~~ 176 (213)
.-|++.+..++...+++++.+.++++.+++++...++.+.+.++++++++.+++...++...+++.-+++.+
T Consensus 518 ~~L~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~~~~~~~~a~~ea~~~~~~a~~~~~~~i~~lk 589 (771)
T TIGR01069 518 EKLSALEKELEQKNEHLEKLLKEQEKLKKELEQEMEELKERERNKKLELEKEAQEALKALKKEVESIIRELK 589 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555666666777777777777777777777777777777777777666554444444444443333
No 88
>PF02326 YMF19: Plant ATP synthase F0; InterPro: IPR003319 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunit 8 (or ymf19) found in the F0 complex of mitochondrial F-ATPases from plants and algae. This subunit is sometimes found in association and N-terminal to IPR009455 from INTERPRO, in higher plants. Subunit 8 differs in sequence between plants, Metazoa (IPR001421 from INTERPRO) and fungi (IPR009230 from INTERPRO) [, ]. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0000276 mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)
Probab=96.06 E-value=0.038 Score=40.63 Aligned_cols=63 Identities=10% Similarity=0.159 Sum_probs=50.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133 79 LTLPIIMVEFLVLMFALDKIYYSPLGNFMDERDNAIKEKLNSVKDTSEEVKQLEEQAAAVMRA 141 (213)
Q Consensus 79 ~tl~~~lInFlIL~~iL~kfl~kpI~~~Ld~R~~~I~~~l~eAe~~~~ea~~~~~eae~~L~~ 141 (213)
.+++|.++.|+++++++.+++.|.+.+.+.-|...+.....+......+..+....+...+.+
T Consensus 10 sQ~fW~~i~f~~~y~~~~~~~lP~i~~~lk~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 72 (86)
T PF02326_consen 10 SQYFWLLIFFFFFYIFLVNFILPKISRILKLRSKLSSSSISSKSKLNSESSKLSVSYDKLLSN 72 (86)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhhHHHHHHHH
Confidence 367899999999999999999999999999999999988877666666665555555555544
No 89
>PF06188 HrpE: HrpE/YscL/FliH and V-type ATPase subunit E; InterPro: IPR009335 This family consists of several bacterial HrpE proteins, which are believed to function on the type III secretion system, specifically the secretion of HrpZ (harpinPss) []. This family also includes V-type proton ATPase subunit E proteins. This subunit appears to form a tight interaction with subunit G in the F0 complex. Subunits E and G may act together as stators to prevent certain subunits from rotating with the central rotary element []. PF01991 from PFAM also contains V-type ATPase subunit E proteins. There is an evolutionary link between type III secretion systems and membrane-associated proton translocating ATPases [].
Probab=96.06 E-value=0.2 Score=41.93 Aligned_cols=81 Identities=17% Similarity=0.191 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133 117 KLNSVKDTSEEVKQLEEQAAAVMRAARAEISAALT----KMKKETQLEVEQKLAVGRKKIEAELQEALANLERQKEDTIK 192 (213)
Q Consensus 117 ~l~eAe~~~~ea~~~~~eae~~L~~Ar~ea~~Ii~----~Ak~eAe~e~e~il~~Ak~e~e~~~~~A~~~I~~e~~~a~~ 192 (213)
.+....+.++-+++++.+++.++.+|+.+++.+++ ++.++.......++...+.+.+.+........+.-...+..
T Consensus 25 ~L~~~~~a~~IL~~A~~qA~~Il~~Ae~eAe~l~~~a~e~a~~~~~q~a~~ll~~~~~~~e~l~~~l~~~~~~ll~~al~ 104 (191)
T PF06188_consen 25 QLAAQQQAREILEDARQQAEQILQQAEEEAEALLEQAYEQAEAQFWQQANALLQEWQQQREQLLQQLEEQAEELLSQALE 104 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566777888999999999999999999999 55555555556666677777666666666665555555555
Q ss_pred HHHHH
Q 028133 193 SLDSQ 197 (213)
Q Consensus 193 eL~~e 197 (213)
.+-++
T Consensus 105 ~lL~e 109 (191)
T PF06188_consen 105 RLLDE 109 (191)
T ss_pred HHHHc
Confidence 44443
No 90
>PRK12704 phosphodiesterase; Provisional
Probab=96.06 E-value=0.41 Score=46.04 Aligned_cols=8 Identities=25% Similarity=0.497 Sum_probs=3.1
Q ss_pred HHHHHHHH
Q 028133 81 LPIIMVEF 88 (213)
Q Consensus 81 l~~~lInF 88 (213)
+++.++.|
T Consensus 7 ~~~~ivg~ 14 (520)
T PRK12704 7 ILIALVAL 14 (520)
T ss_pred HHHHHHHH
Confidence 33334443
No 91
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=96.02 E-value=0.24 Score=49.79 Aligned_cols=71 Identities=17% Similarity=0.250 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133 106 FMDERDNAIKEKLNSVKDTSEEVKQLEEQAAAVMRAARAEISAALTKMKKETQLEVEQKLAVGRKKIEAELQEAL 180 (213)
Q Consensus 106 ~Ld~R~~~I~~~l~eAe~~~~ea~~~~~eae~~L~~Ar~ea~~Ii~~Ak~eAe~e~e~il~~Ak~e~e~~~~~A~ 180 (213)
-+++.+...+...+++++.+.++++.+++++...++.+.+.++++++++++++. ++.+++.++++.+.+.+
T Consensus 524 ~l~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~~~~~~~~~~~~a~~----~l~~a~~~~~~~i~~lk 594 (782)
T PRK00409 524 SLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLEEAEKEAQQ----AIKEAKKEADEIIKELR 594 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
Confidence 344444445555566666666777777777777777776666666666665544 44444444444444443
No 92
>TIGR01147 V_ATP_synt_G vacuolar ATP synthase, subunit G. This model describes the vacuolar ATP synthase G subunit in eukaryotes and includes members from diverse groups e.g., fungi, plants, parasites etc. V-ATPases are multi-subunit enzymes composed of two functional domains: A transmembrane Vo domain and a peripheral catalytic domain V1. The G subunit is one of the subunits of the catalytic domain. V-ATPases are responsible for the acidification of endosomes and lysosomes, which are part of the central vacuolar system.
Probab=95.98 E-value=0.49 Score=36.61 Aligned_cols=43 Identities=30% Similarity=0.322 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133 131 LEEQAAAVMRAARAEISAALTKMKKETQLEVEQKLAVGRKKIE 173 (213)
Q Consensus 131 ~~~eae~~L~~Ar~ea~~Ii~~Ak~eAe~e~e~il~~Ak~e~e 173 (213)
+..++..++.+||.....-+.+|+.+|+.+.+....+-+.+-.
T Consensus 14 AE~eA~~IV~~AR~~r~~RLKqAK~EA~~EI~~yr~~kE~ef~ 56 (113)
T TIGR01147 14 AEKRAAEKVSEARKRKTKRLKQAKEEAQKEVEKYKQQREKEFK 56 (113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444444333333
No 93
>TIGR01147 V_ATP_synt_G vacuolar ATP synthase, subunit G. This model describes the vacuolar ATP synthase G subunit in eukaryotes and includes members from diverse groups e.g., fungi, plants, parasites etc. V-ATPases are multi-subunit enzymes composed of two functional domains: A transmembrane Vo domain and a peripheral catalytic domain V1. The G subunit is one of the subunits of the catalytic domain. V-ATPases are responsible for the acidification of endosomes and lysosomes, which are part of the central vacuolar system.
Probab=95.83 E-value=0.5 Score=36.55 Aligned_cols=98 Identities=17% Similarity=0.216 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133 112 NAIKEKLNSVKDTSEEVKQLEEQAAAVMRAARAEISAALTKMKKETQLEVEQKLAVGRKKIEAELQEALANLERQKEDTI 191 (213)
Q Consensus 112 ~~I~~~l~eAe~~~~ea~~~~~eae~~L~~Ar~ea~~Ii~~Ak~eAe~e~e~il~~Ak~e~e~~~~~A~~~I~~e~~~a~ 191 (213)
..|+.-|..=+++..-+.++++.-...|.+|+.+|+.-|+.-+.+-+.+......+..-..+..-.....+-+.+.....
T Consensus 6 ~GIQ~LL~AE~eA~~IV~~AR~~r~~RLKqAK~EA~~EI~~yr~~kE~ef~~~ea~~~g~~~~~~~~l~~et~~ki~~ik 85 (113)
T TIGR01147 6 QGIQQLLQAEKRAAEKVSEARKRKTKRLKQAKEEAQKEVEKYKQQREKEFKEFEAKHLGGNGAAEEKAEAETQAKIREIK 85 (113)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHH
Confidence 35666665555677777788888888999999999999999988888888887766554444444444444444444444
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 028133 192 KSLDSQIAALSEEIVRKV 209 (213)
Q Consensus 192 ~eL~~ei~~lA~~ia~Ki 209 (213)
......-.++...+...|
T Consensus 86 ~~~~~~~~~Vv~~Ll~~V 103 (113)
T TIGR01147 86 KAVQKNKDAVIKDLLHLV 103 (113)
T ss_pred HHHHHhHHHHHHHHHHHH
Confidence 444444444444444443
No 94
>PRK09098 type III secretion system protein HrpB; Validated
Probab=95.83 E-value=0.67 Score=40.03 Aligned_cols=31 Identities=19% Similarity=0.342 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133 128 VKQLEEQAAAVMRAARAEISAALTKMKKETQ 158 (213)
Q Consensus 128 a~~~~~eae~~L~~Ar~ea~~Ii~~Ak~eAe 158 (213)
......+.++.+++||.++++|+++|+.+|+
T Consensus 34 ~~~~~~~~~~ila~Ar~~A~~Il~~A~~~A~ 64 (233)
T PRK09098 34 LAAVHAERDAVLAAARARAERIVAEARAQAE 64 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555555443
No 95
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=95.81 E-value=0.28 Score=35.74 Aligned_cols=67 Identities=19% Similarity=0.298 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133 81 LPIIMVEFLVLMFALDKIYYSPLGNFMDERDNAIKEKLNSVKDTSEEVKQLEEQAAAVMRAARAEISA 148 (213)
Q Consensus 81 l~~~lInFlIL~~iL~kfl~kpI~~~Ld~R~~~I~~~l~eAe~~~~ea~~~~~eae~~L~~Ar~ea~~ 148 (213)
.++..+.|++|++++.++ ...+.+.+++=.+.++.--++.+....+......+.+..+++.+.+.+.
T Consensus 3 ~lI~Aiaf~vLvi~l~~~-l~~l~~~l~~~~~ti~~l~~~~~~i~~e~~~ll~~~n~l~~dv~~k~~~ 69 (90)
T PF06103_consen 3 GLIAAIAFAVLVIFLIKV-LKKLKKTLDEVNKTIDTLQEQVDPITKEINDLLHNTNELLEDVNEKLEK 69 (90)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456678899988888876 4556777887777777777777777777777777777777776655543
No 96
>PRK00106 hypothetical protein; Provisional
Probab=95.65 E-value=0.81 Score=44.23 Aligned_cols=44 Identities=11% Similarity=0.068 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133 137 AVMRAARAEISAALTKMKKETQLEVEQKLAVGRKKIEAELQEAL 180 (213)
Q Consensus 137 ~~L~~Ar~ea~~Ii~~Ak~eAe~e~e~il~~Ak~e~e~~~~~A~ 180 (213)
..+.+|+.+++.++.++..+++.+..+...++++++...+.+.+
T Consensus 46 ~IleeAe~eAe~I~keA~~EAke~~ke~~lEaeeEi~~~R~ElE 89 (535)
T PRK00106 46 NLRGKAERDAEHIKKTAKRESKALKKELLLEAKEEARKYREEIE 89 (535)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444444444433333333
No 97
>MTH00169 ATP8 ATP synthase F0 subunit 8; Provisional
Probab=95.43 E-value=0.051 Score=38.21 Aligned_cols=38 Identities=8% Similarity=0.091 Sum_probs=35.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 028133 79 LTLPIIMVEFLVLMFALDKIYYSPLGNFMDERDNAIKE 116 (213)
Q Consensus 79 ~tl~~~lInFlIL~~iL~kfl~kpI~~~Ld~R~~~I~~ 116 (213)
.+++|.++.|+++++++.+++.|.+.+.++.|......
T Consensus 11 sQ~~Wl~i~f~~ly~l~s~~iLPri~~~l~~R~~~~~~ 48 (67)
T MTH00169 11 TQYIWTLIILFFLFSLLVNYILPKIQQQLVIRTKGVNS 48 (67)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 46889999999999999999999999999999998877
No 98
>PRK12705 hypothetical protein; Provisional
Probab=95.41 E-value=2.7 Score=40.45 Aligned_cols=30 Identities=20% Similarity=0.336 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 028133 180 LANLERQKEDTIKSLDSQIAALSEEIVRKV 209 (213)
Q Consensus 180 ~~~I~~e~~~a~~eL~~ei~~lA~~ia~Ki 209 (213)
+.++..+.....++...++..-|...|..+
T Consensus 152 ~~~~~~e~~~~i~~~e~~~~~~a~~~A~~i 181 (508)
T PRK12705 152 DAELEEEKAQRVKKIEEEADLEAERKAQNI 181 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444433
No 99
>PRK02292 V-type ATP synthase subunit E; Provisional
Probab=95.40 E-value=0.46 Score=39.17 Aligned_cols=80 Identities=23% Similarity=0.261 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Q 028133 124 TSEEVKQLEEQAAAVMRAARAEISAALTKMKKETQLEVEQKLAVGRKKIEAELQEALANLER-QKEDTIKSLDSQIAALS 202 (213)
Q Consensus 124 ~~~ea~~~~~eae~~L~~Ar~ea~~Ii~~Ak~eAe~e~e~il~~Ak~e~e~~~~~A~~~I~~-e~~~a~~eL~~ei~~lA 202 (213)
..+-..++..+++.++.+|+.+++++.+++..+++.+...+...+...+........-..++ -..+...+++.++..+.
T Consensus 18 ~~~I~~ea~~~~~~i~~ea~~~a~~i~~~~~~~a~~e~~~~~~r~~s~a~~~~rr~~L~~r~~~l~~v~~~a~~kL~~~~ 97 (188)
T PRK02292 18 ASEIRAEADEEAEEIIAEAEADAEEILEDREAEAEREIEQLREQELSSAKLEAKRERLNARKEVLEDVRNQVEDEIASLD 97 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 34445677788889999999999999999999888888888776665555444433221111 12333444444444444
Q ss_pred H
Q 028133 203 E 203 (213)
Q Consensus 203 ~ 203 (213)
.
T Consensus 98 ~ 98 (188)
T PRK02292 98 G 98 (188)
T ss_pred h
Confidence 3
No 100
>PRK01194 V-type ATP synthase subunit E; Provisional
Probab=95.27 E-value=0.36 Score=40.19 Aligned_cols=74 Identities=9% Similarity=0.113 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133 126 EEVKQLEEQAAAVMRAARAEISAALT----KMKKETQLEVEQKLAVGRKKIEAELQEALANLERQKEDTIKSLDSQIAAL 201 (213)
Q Consensus 126 ~ea~~~~~eae~~L~~Ar~ea~~Ii~----~Ak~eAe~e~e~il~~Ak~e~e~~~~~A~~~I~~e~~~a~~eL~~ei~~l 201 (213)
.-..++..+++.++.+++.+++.+.+ +++.++...+++++..|+-+....+-.+++++ .+++..+...++..+
T Consensus 20 ~I~~eA~~~aeei~~ea~~~a~~~~~~~~~k~~~e~~~~~~riis~A~Le~R~~~L~aree~---I~~v~~~a~e~L~~l 96 (185)
T PRK01194 20 EINDEYSKRIEKLEKECDSKIQSIKEYYEKKMRAEISRLKKSIIDKANIEARSIKREKRREI---LKDYLDIAYEHLMNI 96 (185)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH---HHHHHHHHHHHHHcc
Confidence 33455666666666666666665554 55666666677777777777776666665554 344444444444444
Q ss_pred H
Q 028133 202 S 202 (213)
Q Consensus 202 A 202 (213)
.
T Consensus 97 ~ 97 (185)
T PRK01194 97 T 97 (185)
T ss_pred c
Confidence 3
No 101
>MTH00025 ATP8 ATP synthase F0 subunit 8; Validated
Probab=94.97 E-value=0.072 Score=37.77 Aligned_cols=39 Identities=13% Similarity=0.146 Sum_probs=35.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 028133 79 LTLPIIMVEFLVLMFALDKIYYSPLGNFMDERDNAIKEK 117 (213)
Q Consensus 79 ~tl~~~lInFlIL~~iL~kfl~kpI~~~Ld~R~~~I~~~ 117 (213)
.+++|.++.|+++++++.+++.|.+.+.+..|....++.
T Consensus 11 nQi~W~~i~f~il~~l~sk~iLP~i~~~~~~R~~i~k~~ 49 (70)
T MTH00025 11 TQYRWTLIVLFLLLFFLVFFVLPTIKRNWLIRKSLMKKG 49 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 468899999999999999999999999999999877643
No 102
>PRK06669 fliH flagellar assembly protein H; Validated
Probab=94.84 E-value=1.4 Score=38.72 Aligned_cols=47 Identities=17% Similarity=0.287 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133 123 DTSEEVKQLEEQAAAVMRAARAEISAALTKMKKETQLEVEQKLAVGR 169 (213)
Q Consensus 123 ~~~~ea~~~~~eae~~L~~Ar~ea~~Ii~~Ak~eAe~e~e~il~~Ak 169 (213)
.....+.++..+++..+.+++.++++++++++.+++..+++..+++.
T Consensus 78 ~a~~~l~~~~~ea~~~l~~a~~q~e~~~~ea~~e~e~~~~~a~~eGy 124 (281)
T PRK06669 78 EAKEELLKKTDEASSIIEKLQMQIEREQEEWEEELERLIEEAKAEGY 124 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566666666666666666666666666666555555544443
No 103
>PRK00106 hypothetical protein; Provisional
Probab=94.82 E-value=4.2 Score=39.43 Aligned_cols=44 Identities=16% Similarity=0.138 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133 129 KQLEEQAAAVMRAARAEISAALTKMKKETQLEVEQKLAVGRKKI 172 (213)
Q Consensus 129 ~~~~~eae~~L~~Ar~ea~~Ii~~Ak~eAe~e~e~il~~Ak~e~ 172 (213)
++++.+++...++++.++++...+++.+++.+..+...+.+++.
T Consensus 49 eeAe~eAe~I~keA~~EAke~~ke~~lEaeeEi~~~R~ElEkel 92 (535)
T PRK00106 49 GKAERDAEHIKKTAKRESKALKKELLLEAKEEARKYREEIEQEF 92 (535)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555666666666666666666666666555555555443
No 104
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=94.65 E-value=2.1 Score=43.11 Aligned_cols=87 Identities=14% Similarity=0.135 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133 104 GNFMDERDNAIKEKLNSVKDTSEEVKQLEEQAAAVMRAARAEISAALTKMKKETQLEVEQKLAVGRKKIEAELQEALANL 183 (213)
Q Consensus 104 ~~~Ld~R~~~I~~~l~eAe~~~~ea~~~~~eae~~L~~Ar~ea~~Ii~~Ak~eAe~e~e~il~~Ak~e~e~~~~~A~~~I 183 (213)
..++.+....+.+-++..++.+.++++...+.++.+.+++...++ +++-.++.+..+++++.++++++++++.+++.++
T Consensus 503 ~~~~~~~~~~~~~li~~L~~~~~~~e~~~~~~~~~~~e~~~~~~~-l~~~~~~l~~~~~~~~~~a~~ea~~~~~~a~~~~ 581 (771)
T TIGR01069 503 KTFYGEFKEEINVLIEKLSALEKELEQKNEHLEKLLKEQEKLKKE-LEQEMEELKERERNKKLELEKEAQEALKALKKEV 581 (771)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666666666666666666666666666666555444 3344445555666666666666666666666655
Q ss_pred HHHHHHHH
Q 028133 184 ERQKEDTI 191 (213)
Q Consensus 184 ~~e~~~a~ 191 (213)
+.-.++.+
T Consensus 582 ~~~i~~lk 589 (771)
T TIGR01069 582 ESIIRELK 589 (771)
T ss_pred HHHHHHHH
Confidence 55444443
No 105
>KOG1772 consensus Vacuolar H+-ATPase V1 sector, subunit G [Energy production and conversion]
Probab=94.35 E-value=1.8 Score=33.11 Aligned_cols=91 Identities=12% Similarity=0.163 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133 110 RDNAIKEKLNSVKDTSEEVKQLEEQAAAVMRAARAEISAALTKMKKETQLEVEQKLAVGRKKIEAELQEALANLERQKED 189 (213)
Q Consensus 110 R~~~I~~~l~eAe~~~~ea~~~~~eae~~L~~Ar~ea~~Ii~~Ak~eAe~e~e~il~~Ak~e~e~~~~~A~~~I~~e~~~ 189 (213)
+...|..-|..=.++.+.+++++.--...|.+|+.|+..-+++-+.+-+.+...-...+--.-...-.....+.+.....
T Consensus 4 q~qGIqQLLqAEK~A~e~V~~ARk~K~~RLKQAKeEA~~Eie~yr~qrE~efk~ke~~~~G~~~~~~~~~e~~t~~ki~~ 83 (108)
T KOG1772|consen 4 QSQGIQQLLQAEKRAAEKVEEARKRKLRRLKQAKEEAEKEIEEYRSQREKEFKEKESAASGSQGALEKRLEQETDDKIAG 83 (108)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHH
Confidence 45567776666667788888888888889999999999999999888888887776666333333333333444444443
Q ss_pred HHHHHHHHHHH
Q 028133 190 TIKSLDSQIAA 200 (213)
Q Consensus 190 a~~eL~~ei~~ 200 (213)
........-.+
T Consensus 84 lk~~~~k~~~~ 94 (108)
T KOG1772|consen 84 LKTSAQKNSDD 94 (108)
T ss_pred HHHHHHHhhHH
Confidence 33333333333
No 106
>KOG3976 consensus Mitochondrial F1F0-ATP synthase, subunit b/ATP4 [Energy production and conversion]
Probab=94.24 E-value=3.4 Score=35.96 Aligned_cols=44 Identities=18% Similarity=0.154 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133 83 IIMVEFLVLMFALDKIYYSPLGNFMDERDNAIKEKLNSVKDTSE 126 (213)
Q Consensus 83 ~~lInFlIL~~iL~kfl~kpI~~~Ld~R~~~I~~~l~eAe~~~~ 126 (213)
+..+.|++|+++..+.+.+.+.++.|++.++|.+.++++.+..-
T Consensus 99 ~~~~s~lgl~~~~~k~~g~ai~~~adk~~~k~~~~~~~arq~~i 142 (247)
T KOG3976|consen 99 ISTLSFLGLTGLAIKKLGPAIADWADKLIEKILSQLEEARQAHI 142 (247)
T ss_pred hhhhHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 34688999999999999999999999999999999988875443
No 107
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=94.13 E-value=3.7 Score=41.49 Aligned_cols=87 Identities=20% Similarity=0.279 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133 104 GNFMDERDNAIKEKLNSVKDTSEEVKQLEEQAAAVMRAARAEISAALTKMKKETQLEVEQKLAVGRKKIEAELQEALANL 183 (213)
Q Consensus 104 ~~~Ld~R~~~I~~~l~eAe~~~~ea~~~~~eae~~L~~Ar~ea~~Ii~~Ak~eAe~e~e~il~~Ak~e~e~~~~~A~~~I 183 (213)
.+.+.+....+..-++..++.+.++++...+.+..+.+++....+ +++-+++.+.++++++.++++++++.+++++.++
T Consensus 508 ~~~~~~~~~~~~~li~~l~~~~~~~e~~~~~~~~~~~e~~~~~~~-l~~~~~~l~~~~~~~~~~~~~~a~~~l~~a~~~~ 586 (782)
T PRK00409 508 KKLIGEDKEKLNELIASLEELERELEQKAEEAEALLKEAEKLKEE-LEEKKEKLQEEEDKLLEEAEKEAQQAIKEAKKEA 586 (782)
T ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666777777777777777777777777777777665555 4445566677888888888888888888888877
Q ss_pred HHHHHHHH
Q 028133 184 ERQKEDTI 191 (213)
Q Consensus 184 ~~e~~~a~ 191 (213)
+.-..+.+
T Consensus 587 ~~~i~~lk 594 (782)
T PRK00409 587 DEIIKELR 594 (782)
T ss_pred HHHHHHHH
Confidence 66555554
No 108
>COG1317 FliH Flagellar biosynthesis/type III secretory pathway protein [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=93.80 E-value=2.5 Score=36.54 Aligned_cols=39 Identities=26% Similarity=0.359 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 028133 174 AELQEALANLERQKEDTIKSLDSQIAALSEEIVRKVLPV 212 (213)
Q Consensus 174 ~~~~~A~~~I~~e~~~a~~eL~~ei~~lA~~ia~KiL~~ 212 (213)
+....-..++..+.+.....+.+++.+++.+++++||+.
T Consensus 95 e~~~~li~~~~~~~~~~~~~~e~qLv~lvl~ia~~Vi~~ 133 (234)
T COG1317 95 ERLAKLIAEFQAELEALKEVVEKQLVQLVLEIARKVIGK 133 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 445555566666677777789999999999999999863
No 109
>PRK15322 invasion protein OrgB; Provisional
Probab=93.68 E-value=3.9 Score=34.77 Aligned_cols=55 Identities=15% Similarity=0.122 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133 123 DTSEEVKQLEEQAAAVMRAARAEISAALTKMKKETQLEVEQKLAVGRKKIEAELQEAL 180 (213)
Q Consensus 123 ~~~~ea~~~~~eae~~L~~Ar~ea~~Ii~~Ak~eAe~e~e~il~~Ak~e~e~~~~~A~ 180 (213)
-.+.-.++++.++..++.+|+.+++.|...|..++-.. -+.++..+++.-+.+.+
T Consensus 13 ~a~~l~~qA~~kA~~ii~qA~~eaE~ir~~A~~~GYq~---Gl~qa~~~la~~~a~~~ 67 (210)
T PRK15322 13 SAERLEQQARRRAKRILRQAEEEAETLRMYAYQEGYEQ---GMIDALQQVAAYLTDNQ 67 (210)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 33444455666666666666666666666666655432 25555555554444433
No 110
>PF06936 Selenoprotein_S: Selenoprotein S (SelS); InterPro: IPR009703 This family consists of several mammalian selenoprotein S (SelS) sequences. SelS is a plasma membrane protein and is present in a variety of tissues and cell types. These proteins are involved in the degradation process of misfolded endoplasmic reticulum (ER) luminal proteins which participate in the transfer of misfolded proteins from the ER to the cytosol, where they are destroyed by the proteasome in a ubiquitin-dependent manner []. They probably serve as a linker between DER1, which mediates the retro-translocation of misfolded proteins into the cytosol, and the ATPase complex VCP, which mediates the translocation and ubiquitination.; GO: 0008430 selenium binding, 0006886 intracellular protein transport, 0030176 integral to endoplasmic reticulum membrane; PDB: 2Q2F_A.
Probab=93.27 E-value=0.92 Score=38.15 Aligned_cols=27 Identities=15% Similarity=0.155 Sum_probs=3.7
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 028133 83 IIMVEFLVLMFALDKIYYSPLGNFMDER 110 (213)
Q Consensus 83 ~~lInFlIL~~iL~kfl~kpI~~~Ld~R 110 (213)
|.++..+|++|+++..+.+.+ ..+.+|
T Consensus 38 Wyil~~~I~ly~l~qkl~~~~-r~~r~~ 64 (190)
T PF06936_consen 38 WYILFGCILLYLLWQKLSPSF-RSLRER 64 (190)
T ss_dssp ------------------HHH-HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHh
Confidence 444444444444444444444 333333
No 111
>PRK06328 type III secretion system protein; Validated
Probab=93.24 E-value=4.8 Score=34.44 Aligned_cols=41 Identities=17% Similarity=0.143 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133 122 KDTSEEVKQLEEQAAAVMRAARAEISAALTKMKKETQLEVE 162 (213)
Q Consensus 122 e~~~~ea~~~~~eae~~L~~Ar~ea~~Ii~~Ak~eAe~e~e 162 (213)
.+..+-++++++++++.+.+++.+++++++++++++-.+--
T Consensus 29 ~~A~~il~~a~~~ae~i~~ea~~e~E~i~eeA~~eGy~eG~ 69 (223)
T PRK06328 29 LDAQELLEKTKEDSEAYTQETHEECEKLREEAKNQGFKEGS 69 (223)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566677888888899999999999999888877765553
No 112
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=92.76 E-value=5.2 Score=33.54 Aligned_cols=67 Identities=16% Similarity=0.248 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHH
Q 028133 81 LPIIMVEFLVLMFALDKIYYSPLGNFMDERDNAIKEKLNSVKD--------TSEEVKQLEEQAAAVMRAARAEIS 147 (213)
Q Consensus 81 l~~~lInFlIL~~iL~kfl~kpI~~~Ld~R~~~I~~~l~eAe~--------~~~ea~~~~~eae~~L~~Ar~ea~ 147 (213)
++..+|.|++-|++.+++....+...-.+.+.-+.+...+|+. .+++..+.+.+++..+..-+.+..
T Consensus 7 i~~~~vG~~~G~~~~~~~~~~~~~~A~~~A~~i~~~A~~eAe~~~ke~~~eakee~~~~r~~~E~E~~~~~~el~ 81 (201)
T PF12072_consen 7 IVALIVGIGIGYLVRKKINRKKLEQAEKEAEQILEEAEREAEAIKKEAELEAKEEAQKLRQELERELKERRKELQ 81 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4446778888888877777777766666666666655555543 333334444444444444444433
No 113
>PRK12705 hypothetical protein; Provisional
Probab=92.35 E-value=11 Score=36.32 Aligned_cols=21 Identities=24% Similarity=0.237 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 028133 126 EEVKQLEEQAAAVMRAARAEI 146 (213)
Q Consensus 126 ~ea~~~~~eae~~L~~Ar~ea 146 (213)
+++...+.+.+..+.+.+.+.
T Consensus 59 ~~~~~~~~~~e~e~~~~~~~~ 79 (508)
T PRK12705 59 ELLLRERNQQRQEARREREEL 79 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444433333
No 114
>TIGR02499 HrpE_YscL_not type III secretion apparatus protein, HrpE/YscL family. This model is related to Pfam model pfam06188, but is broader. pfam06188 describes HrpE-like proteins, components of bacterial type III secretion systems primarily in bacteria that infect plants. This model includes also the homologous proteins of animal pathogens, such as YscL of Yersinia pestis. This model excludes the related protein FliH of the bacterial flagellar apparatus (see pfam02108)
Probab=92.25 E-value=4.8 Score=31.96 Aligned_cols=77 Identities=17% Similarity=0.136 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133 123 DTSEEVKQLEEQAAAVMRAARAEISAALTKMKKETQLEVEQKLAVGRKKIEAELQEALANLERQKEDTIKSLDSQIAALS 202 (213)
Q Consensus 123 ~~~~ea~~~~~eae~~L~~Ar~ea~~Ii~~Ak~eAe~e~e~il~~Ak~e~e~~~~~A~~~I~~e~~~a~~eL~~ei~~lA 202 (213)
+..+-+++++.++++++.+|+.+.++...+...++ +.++..+....+..+..+.+........++..-+...+
T Consensus 14 ~A~~il~~A~~~a~~i~~~A~~~~e~~~~~g~~~G-------~~~g~~e~~~~~~~~~~~~~~~~~~~e~~l~~l~~~~~ 86 (166)
T TIGR02499 14 QAQAILAAARQRAEAILADAEEEAEASRQLGYEQG-------LEQFWQEAAAQLAEWQQEAEQLEASLEERLAELVLQAL 86 (166)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556667777778888888877777655444433 33334444444444444444444444555555444444
Q ss_pred HHHH
Q 028133 203 EEIV 206 (213)
Q Consensus 203 ~~ia 206 (213)
-.+.
T Consensus 87 ~kil 90 (166)
T TIGR02499 87 EQIL 90 (166)
T ss_pred HHHh
Confidence 4443
No 115
>PRK04654 sec-independent translocase; Provisional
Probab=91.70 E-value=5.3 Score=34.14 Aligned_cols=7 Identities=29% Similarity=0.790 Sum_probs=4.8
Q ss_pred cCCccch
Q 028133 74 LFDFNLT 80 (213)
Q Consensus 74 l~~~n~t 80 (213)
||||.|+
T Consensus 1 MFgIG~~ 7 (214)
T PRK04654 1 MFDIGVG 7 (214)
T ss_pred CCCccHH
Confidence 6777764
No 116
>PRK06397 V-type ATP synthase subunit H; Validated
Probab=91.03 E-value=5.5 Score=30.15 Aligned_cols=72 Identities=15% Similarity=0.302 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133 105 NFMDERDNAIKEKLNSVKD-TSEEVKQLEEQAAAVMRAARAEIS----AALTKMKKETQLEVEQKLAVGRKKIEAEL 176 (213)
Q Consensus 105 ~~Ld~R~~~I~~~l~eAe~-~~~ea~~~~~eae~~L~~Ar~ea~----~Ii~~Ak~eAe~e~e~il~~Ak~e~e~~~ 176 (213)
+++.+.+..+..++....+ ......++..+|+..+..-..+.. ..+.++|++++.....++++|+++++.+.
T Consensus 13 kiIKeKE~S~dkEI~~~k~eqe~~iKEa~~k~ee~~~kteeE~~~~Y~~~l~e~RkeaE~ka~eiI~~Akq~As~i~ 89 (111)
T PRK06397 13 KIIKEKEESIDKEIANIKNEQENEIKEAKSKYEEKAKKTEEESLNMYNAALMEARKEAEKKAVEIINKAKQEASLIK 89 (111)
T ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4556666666666655543 233345555555555554444433 34445666666666777777777776554
No 117
>PRK00247 putative inner membrane protein translocase component YidC; Validated
Probab=90.64 E-value=7 Score=36.86 Aligned_cols=16 Identities=6% Similarity=0.395 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 028133 82 PIIMVEFLVLMFALDK 97 (213)
Q Consensus 82 ~~~lInFlIL~~iL~k 97 (213)
+|+++.-.++.+++.+
T Consensus 260 lwtl~Qq~i~~~~l~~ 275 (429)
T PRK00247 260 LWTLIQNIIMYLILER 275 (429)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3445544555555554
No 118
>PF04120 Iron_permease: Low affinity iron permease ; InterPro: IPR007251 Although originally identified as a low-affinity iron(II) permease [, ], Fet4 has since been shown to import several other transition metal ions, including copper [, ] and zinc []. Copper, cobalt, and cadmium inhibit Fet4 [, ]. Fet4 is an integral protein of the plasma membrane [, ]. FET4 is not essential, not even in fet3 fet4 double mutants []. Over expression of FET4 improves growth under alkaline conditions []. Transcription of FET4 is induced by Aft1 in response to low levels of iron [, , ] or by Zap1 in response to low zinc [, ], but not in response to low copper []. When the high-affinity iron permease component Fet3 is deleted, FET4 is induced by the addition of copper, zinc, cobalt, or manganese []. It is also induced under anaerobic conditions [, , ] and repressed by Rox1 in aerobic conditions [, ]. Rox1 attenuates the activation of FET4 by Aft1 or Zap1 []. ; GO: 0055085 transmembrane transport
Probab=90.41 E-value=4 Score=32.38 Aligned_cols=70 Identities=14% Similarity=0.345 Sum_probs=34.9
Q ss_pred hcccCCcc--chHHH----HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHH
Q 028133 71 KAALFDFN--LTLPI----IMVEFLVLMFALDKIYYSPLGNFMDERDNAIKEKLNSVKD--------TSEEVKQLEEQAA 136 (213)
Q Consensus 71 ~g~l~~~n--~tl~~----~lInFlIL~~iL~kfl~kpI~~~Ld~R~~~I~~~l~eAe~--------~~~ea~~~~~eae 136 (213)
.|++|+|+ |++++ ++|.|+.++++-+- ...=.+.|..+-+.+-....+|++ ..+++++.+..|+
T Consensus 31 ~Gp~~~~sdtWQLviNt~ttIitFlmvfLIQn~--q~Rd~~al~~KLdeLi~~~~~a~n~li~iE~l~~~el~~~~~~~~ 108 (132)
T PF04120_consen 31 SGPVFGFSDTWQLVINTATTIITFLMVFLIQNT--QNRDTKALQAKLDELIRAVKEARNELIDIEDLTEEELEEIRKRYE 108 (132)
T ss_pred HhccccCcchHHHHHccHHHHHHHHHHHHHHhh--hhhHHHHHHHHHHHHHHHHHHHHHHhCCcccCCHHHHHHHHHHHH
Confidence 47788875 55554 35655555444332 233334555555555555554432 2344455555554
Q ss_pred HHHHHH
Q 028133 137 AVMRAA 142 (213)
Q Consensus 137 ~~L~~A 142 (213)
+.-..+
T Consensus 109 ~~~~~~ 114 (132)
T PF04120_consen 109 RLAEQA 114 (132)
T ss_pred HHHHHh
Confidence 444333
No 119
>PF06936 Selenoprotein_S: Selenoprotein S (SelS); InterPro: IPR009703 This family consists of several mammalian selenoprotein S (SelS) sequences. SelS is a plasma membrane protein and is present in a variety of tissues and cell types. These proteins are involved in the degradation process of misfolded endoplasmic reticulum (ER) luminal proteins which participate in the transfer of misfolded proteins from the ER to the cytosol, where they are destroyed by the proteasome in a ubiquitin-dependent manner []. They probably serve as a linker between DER1, which mediates the retro-translocation of misfolded proteins into the cytosol, and the ATPase complex VCP, which mediates the translocation and ubiquitination.; GO: 0008430 selenium binding, 0006886 intracellular protein transport, 0030176 integral to endoplasmic reticulum membrane; PDB: 2Q2F_A.
Probab=90.27 E-value=5.4 Score=33.56 Aligned_cols=27 Identities=7% Similarity=0.038 Sum_probs=4.2
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 028133 85 MVEFLVLMFALDKIYYSPLGNFMDERD 111 (213)
Q Consensus 85 lInFlIL~~iL~kfl~kpI~~~Ld~R~ 111 (213)
..=|+|+.+|+.+|+|+.+..-+...+
T Consensus 36 yGWyil~~~I~ly~l~qkl~~~~r~~r 62 (190)
T PF06936_consen 36 YGWYILFGCILLYLLWQKLSPSFRSLR 62 (190)
T ss_dssp --------------------HHHHHHH
T ss_pred hCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455778888889999999999884333
No 120
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=90.22 E-value=12 Score=36.11 Aligned_cols=31 Identities=6% Similarity=0.209 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 028133 179 ALANLERQKEDTIKSLDSQIAALSEEIVRKV 209 (213)
Q Consensus 179 A~~~I~~e~~~a~~eL~~ei~~lA~~ia~Ki 209 (213)
.+.+.+.+......+...++..-|...|.+|
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~i 187 (514)
T TIGR03319 157 VEEEARHEAAKLIKEIEEEAKEEADKKAKEI 187 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333
No 121
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=89.86 E-value=12 Score=32.16 Aligned_cols=87 Identities=14% Similarity=0.244 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133 85 MVEFLVLMFALDKIYYSPLGNFMDERDNAIKEKLNSVKDTSEEVKQLEEQAAAVMRAARAEISAALTKMKKETQLEVEQK 164 (213)
Q Consensus 85 lInFlIL~~iL~kfl~kpI~~~Ld~R~~~I~~~l~eAe~~~~ea~~~~~eae~~L~~Ar~ea~~Ii~~Ak~eAe~e~e~i 164 (213)
+..|.++++++.+-++.-+......|.. +....+.+..+..++..-. +++......++.....++.++. ..-
T Consensus 102 isGf~LFL~lvI~R~~~ll~~l~~l~~~--~~~~~~~~~lk~~~~~~~~-~~~~~~~~~~~~~kL~~el~~~-----~~~ 173 (216)
T KOG1962|consen 102 ISGFVLFLSLVIRRLHTLLRELATLRAN--EKAMKENEALKKQLENSSK-LEEENDKLKADLEKLETELEKK-----QKK 173 (216)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHhh--HHHHHHHHHHHHhhhcccc-hhhhHHHHHhhHHHHHHHHHHH-----HHH
Confidence 3458888888888888888888888876 3333333333333332222 3444444444444443333322 233
Q ss_pred HHHHHHHHHHHHHHH
Q 028133 165 LAVGRKKIEAELQEA 179 (213)
Q Consensus 165 l~~Ak~e~e~~~~~A 179 (213)
++.++++.+..+++.
T Consensus 174 Le~~~~~~~al~Kq~ 188 (216)
T KOG1962|consen 174 LEKAQKKVDALKKQS 188 (216)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444555555544444
No 122
>PRK15354 type III secretion system protein SsaK; Provisional
Probab=89.08 E-value=3.8 Score=35.08 Aligned_cols=15 Identities=13% Similarity=0.202 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHH
Q 028133 174 AELQEALANLERQKE 188 (213)
Q Consensus 174 ~~~~~A~~~I~~e~~ 188 (213)
.....++..|.....
T Consensus 108 sLV~~~~~~I~~aI~ 122 (224)
T PRK15354 108 SLVDHAAHHIKNSIE 122 (224)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444444
No 123
>PRK11637 AmiB activator; Provisional
Probab=88.56 E-value=21 Score=33.22 Aligned_cols=42 Identities=12% Similarity=0.166 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133 106 FMDERDNAIKEKLNSVKDTSEEVKQLEEQAAAVMRAARAEIS 147 (213)
Q Consensus 106 ~Ld~R~~~I~~~l~eAe~~~~ea~~~~~eae~~L~~Ar~ea~ 147 (213)
-..++.+.++.++...++...+.+....+.+..+.....+..
T Consensus 44 ~~~~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~ 85 (428)
T PRK11637 44 DNRDQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAIS 85 (428)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444444444333
No 124
>COG4741 Predicted secreted endonuclease distantly related to archaeal Holliday junction resolvase [Nucleotide transport and metabolism]
Probab=87.93 E-value=14 Score=30.33 Aligned_cols=22 Identities=14% Similarity=0.296 Sum_probs=14.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHH
Q 028133 100 YSPLGNFMDERDNAIKEKLNSV 121 (213)
Q Consensus 100 ~kpI~~~Ld~R~~~I~~~l~eA 121 (213)
..-+..-++-++..+...+..+
T Consensus 24 Ir~lq~~~e~k~~~l~e~l~~~ 45 (175)
T COG4741 24 IRSLQGKVESKARELEETLQKA 45 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666666776666666655
No 125
>PF03938 OmpH: Outer membrane protein (OmpH-like); InterPro: IPR005632 This entry includes outer membrane proteins such as OmpH (Skp) among others. OmpH (outer membrane protein H) is a major structural protein of the outer membrane. In Pasteurella multocida it acts as a channel-forming transmembrane porin []. Porins act as molecular sieves to allow the diffusion of small hydrophilic solutes through the outer membrane and also acts as a receptor for bacteriophages and bacteriocins. Porins are highly immunogenic and are conserved in bacterial families, making them attractive vaccine candidates []. The 17kDa protein (Skp, OmpH) of Escherichia coli is a homotrimeric periplasmic chaperone for newly synthesised outer-membrane proteins, the X-ray structure of which has been reported at resolutions of 2.35 A and 2.30 A [, ]. Three hairpin-shaped alpha-helical extensions reach out by approximately 60 A from a trimerisation domain, which is composed of three intersubunit beta-sheets that wind around a central axis. The alpha-helical extensions approach each other at their distal turns, resulting in a fold that resembles a 'three-pronged grasping forcep'. The overall shape of Skp is reminiscent of the cytosolic chaperone prefoldin (IPR009053 from INTERPRO), although it is based on a radically different topology. The peculiar architecture, with apparent plasticity of the prongs and distinct electrostatic and hydrophobic surface properties, supports the recently proposed biochemical mechanism of this chaperone: formation of a Skp(3)-Omp complex protects the outer membrane protein from aggregation during passage through the bacterial periplasm. The ability of Skp to prevent the aggregation of model substrates in vitro is independent of ATP. Skp can interact directly with membrane lipids and lipopolysaccharide. These interactions are needed for efficient Skp-assisted folding of membrane proteins [].; GO: 0051082 unfolded protein binding; PDB: 1SG2_C 1U2M_C.
Probab=87.24 E-value=13 Score=29.32 Aligned_cols=47 Identities=17% Similarity=0.350 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028133 162 EQKLAVGRKKIEAELQEALANLERQKEDTIKSLDSQIAALSEEIVRK 208 (213)
Q Consensus 162 e~il~~Ak~e~e~~~~~A~~~I~~e~~~a~~eL~~ei~~lA~~ia~K 208 (213)
..-+..-..+..+.......++..+.......+..++......++++
T Consensus 82 ~~~l~~~~~~l~~~~~~~~~~l~~~~~~~~~~i~~~i~~~v~~~a~~ 128 (158)
T PF03938_consen 82 QQELQQKEQELQQFQQQAQQQLQQEEQELLQPIQKKINKAVEEYAKE 128 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555666666666777777777777777777777777766653
No 126
>COG1970 MscL Large-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane]
Probab=86.51 E-value=1.4 Score=34.71 Aligned_cols=33 Identities=15% Similarity=0.330 Sum_probs=25.8
Q ss_pred ccchHHH-HHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 028133 77 FNLTLPI-IMVEFLVLMFALDKIYYSPLGNFMDER 110 (213)
Q Consensus 77 ~n~tl~~-~lInFlIL~~iL~kfl~kpI~~~Ld~R 110 (213)
++|..|+ .+|||+|+-|.+ .++.+++.+..++-
T Consensus 68 i~yG~Fi~~vinFlIiAf~i-Fl~Vk~inkl~~~~ 101 (130)
T COG1970 68 IAYGAFIQAVINFLIIAFAI-FLVVKAINKLRRKL 101 (130)
T ss_pred eeHhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 5566666 589999999998 77788888776653
No 127
>PRK04098 sec-independent translocase; Provisional
Probab=86.39 E-value=15 Score=30.01 Aligned_cols=7 Identities=14% Similarity=0.558 Sum_probs=4.0
Q ss_pred cCCccch
Q 028133 74 LFDFNLT 80 (213)
Q Consensus 74 l~~~n~t 80 (213)
||++.|+
T Consensus 1 MfgiG~~ 7 (158)
T PRK04098 1 MFGMGFF 7 (158)
T ss_pred CCCCcHH
Confidence 5666554
No 128
>COG3599 DivIVA Cell division initiation protein [Cell division and chromosome partitioning]
Probab=86.20 E-value=20 Score=30.60 Aligned_cols=51 Identities=24% Similarity=0.421 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133 107 MDERDNAIKEKLNSVKDTSE--EVKQLEEQAAAVMRAARAEISAALTKMKKET 157 (213)
Q Consensus 107 Ld~R~~~I~~~l~eAe~~~~--ea~~~~~eae~~L~~Ar~ea~~Ii~~Ak~eA 157 (213)
+.+|.+.+...+........ ........++.....+..++..|+.++...+
T Consensus 49 l~~~i~~L~~~l~~~~~~~~s~~i~~a~~~a~~~~~~a~~ea~~il~~a~~~a 101 (212)
T COG3599 49 LEDEIDELKEELKEAADAEDSQAIQQAETEAEELKQAAEAEADDILKRASAQA 101 (212)
T ss_pred HHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444433211 2233333444455555555555555555444
No 129
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=86.08 E-value=23 Score=36.12 Aligned_cols=21 Identities=14% Similarity=0.294 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 028133 105 NFMDERDNAIKEKLNSVKDTS 125 (213)
Q Consensus 105 ~~Ld~R~~~I~~~l~eAe~~~ 125 (213)
.|=|+|++.......+.++.+
T Consensus 313 TFEDKrkeNy~kGqaELerRR 333 (1118)
T KOG1029|consen 313 TFEDKRKENYEKGQAELERRR 333 (1118)
T ss_pred chhhhhHHhHhhhhHHHHHHH
Confidence 355667666655444444333
No 130
>PRK09039 hypothetical protein; Validated
Probab=85.69 E-value=28 Score=31.71 Aligned_cols=34 Identities=15% Similarity=0.266 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 028133 81 LPIIMVEFLVLMFALDKIYYSPLGNFMDERDNAI 114 (213)
Q Consensus 81 l~~~lInFlIL~~iL~kfl~kpI~~~Ld~R~~~I 114 (213)
.+..++.|++.+|++.-|++.--....++.=+..
T Consensus 25 ~ll~~~~f~l~~f~~~q~fLs~~i~~~~~eL~~L 58 (343)
T PRK09039 25 TLLLVIMFLLTVFVVAQFFLSREISGKDSALDRL 58 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 3456788888888888887665444333333333
No 131
>PF01741 MscL: Large-conductance mechanosensitive channel, MscL; InterPro: IPR001185 Mechanosensitive ion channels (MscL) play a critical role in transducing physical stresses at the cell membrane into an electrochemical response. MscL is a protein which forms a channel organised as a homopentamer, with each subunit containing two transmembrane regions []. Prokaryotes harbor a large-conductance mechanosensitive channel (gene mscL) that opens in response to stretch forces in the membrane lipid bilayer and may participate in the regulation of osmotic pressure changes within the cell [].; GO: 0005216 ion channel activity, 0006810 transport, 0016021 integral to membrane; PDB: 3HZQ_A 2OAR_A.
Probab=85.48 E-value=1.6 Score=34.47 Aligned_cols=32 Identities=13% Similarity=0.413 Sum_probs=23.7
Q ss_pred ccchHHH-HHHHHHHHHHHHHHHHhhHHHHHHHH
Q 028133 77 FNLTLPI-IMVEFLVLMFALDKIYYSPLGNFMDE 109 (213)
Q Consensus 77 ~n~tl~~-~lInFlIL~~iL~kfl~kpI~~~Ld~ 109 (213)
++++.|+ .+|||+|..+++ +++.+|+.+...+
T Consensus 68 i~yG~Fl~a~I~FlIiA~vv-Flivk~~nk~~~~ 100 (128)
T PF01741_consen 68 IPYGAFLNALINFLIIAFVV-FLIVKPINKLKKK 100 (128)
T ss_dssp E-HCHHHHHHHHHHHHHHHH-HHCHHHHHHCHHT
T ss_pred eeHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhh
Confidence 4465565 699999999999 6678898887433
No 132
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=85.33 E-value=0.36 Score=37.12 Aligned_cols=52 Identities=27% Similarity=0.333 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133 133 EQAAAVMRAARAEISAALTKMKKETQLEVEQKLAVGRKKIEAELQEALANLERQKE 188 (213)
Q Consensus 133 ~eae~~L~~Ar~ea~~Ii~~Ak~eAe~e~e~il~~Ak~e~e~~~~~A~~~I~~e~~ 188 (213)
......+..|+..+.+ .+..|+.+.+.++..|+.+++.++..|..++..-..
T Consensus 63 ~~l~~~l~~aq~~a~~----~~~~A~~eA~~i~~~A~~~a~~i~~~A~~~~~~l~~ 114 (131)
T PF05103_consen 63 ESLQRALIQAQETADE----IKAEAEEEAEEIIEEAQKEAEEIIEEARAEAERLRE 114 (131)
T ss_dssp --------------------------------------------------------
T ss_pred HHHHHhhhhhhhhHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444443 444444455666777777777777766666655543
No 133
>PRK15322 invasion protein OrgB; Provisional
Probab=84.90 E-value=23 Score=30.16 Aligned_cols=82 Identities=11% Similarity=0.046 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028133 129 KQLEEQAAAVMRAARAEISAALTKMKKETQLEVEQKLAVGRKKIEAELQEALANLERQKEDTIKSLDSQIAALSEEIVRK 208 (213)
Q Consensus 129 ~~~~~eae~~L~~Ar~ea~~Ii~~Ak~eAe~e~e~il~~Ak~e~e~~~~~A~~~I~~e~~~a~~eL~~ei~~lA~~ia~K 208 (213)
-+...-.+..+++|++++.+|+.+|..+++..+.....++-.+--.........--.+.+....++..++.+-+..+.+.
T Consensus 8 l~~~~~a~~l~~qA~~kA~~ii~qA~~eaE~ir~~A~~~GYq~Gl~qa~~~la~~~a~~~~l~~~l~~~ie~~~r~lls~ 87 (210)
T PRK15322 8 LERYFSAERLEQQARRRAKRILRQAEEEAETLRMYAYQEGYEQGMIDALQQVAAYLTDNQTMAWKWMEKIQIYARELFSA 87 (210)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455677888999999999999999999988888888777666333333333333444555667777777766665554
Q ss_pred hc
Q 028133 209 VL 210 (213)
Q Consensus 209 iL 210 (213)
.|
T Consensus 88 ~L 89 (210)
T PRK15322 88 AV 89 (210)
T ss_pred Hc
Confidence 44
No 134
>PRK06032 fliH flagellar assembly protein H; Validated
Probab=84.85 E-value=18 Score=30.26 Aligned_cols=36 Identities=19% Similarity=0.237 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 028133 177 QEALANLERQKEDTIKSLDSQIAALSEEIVRKVLPV 212 (213)
Q Consensus 177 ~~A~~~I~~e~~~a~~eL~~ei~~lA~~ia~KiL~~ 212 (213)
......+..........+.+++.+|+..+++||++.
T Consensus 68 ~~~~~~l~~~~~~~~~~~~~~lv~La~~iarkvi~~ 103 (199)
T PRK06032 68 AQAAAGLLAALAAVEHEMETEAADLALAVARKIAGA 103 (199)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444556666777777889999999999999999863
No 135
>PF02108 FliH: Flagellar assembly protein FliH; InterPro: IPR018035 This entry represents a region found in the flagellar assembly protein FliH, as well as in type III secretion system protein HrpE. Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export []. The sequence of fliH has been deduced and shown to encode a protein of molecular mass of 25,782 Da. Bacterial HrpE proteins are belived to function on the type III secretion system, specifically the secretion of HrpZ (harpinPss) [].
Probab=84.40 E-value=2.9 Score=31.52 Aligned_cols=40 Identities=28% Similarity=0.477 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 028133 172 IEAELQEALANLERQKEDTIKSLDSQIAALSEEIVRKVLP 211 (213)
Q Consensus 172 ~e~~~~~A~~~I~~e~~~a~~eL~~ei~~lA~~ia~KiL~ 211 (213)
....+.....+++........+++.++.+++..+++||++
T Consensus 3 ~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~iae~vi~ 42 (128)
T PF02108_consen 3 AQAELEQLLEELEEALQELLEELEQELVELALAIAEKVIG 42 (128)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566667777788888888999999999999999986
No 136
>PRK01919 tatB sec-independent translocase; Provisional
Probab=84.11 E-value=21 Score=29.46 Aligned_cols=7 Identities=29% Similarity=0.781 Sum_probs=4.4
Q ss_pred cCCccch
Q 028133 74 LFDFNLT 80 (213)
Q Consensus 74 l~~~n~t 80 (213)
||||.|+
T Consensus 1 MFdIG~~ 7 (169)
T PRK01919 1 MIDLGLS 7 (169)
T ss_pred CCCCcHH
Confidence 5776654
No 137
>PRK10930 FtsH protease regulator HflK; Provisional
Probab=83.57 E-value=29 Score=32.67 Aligned_cols=15 Identities=13% Similarity=0.386 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHH
Q 028133 103 LGNFMDERDNAIKEK 117 (213)
Q Consensus 103 I~~~Ld~R~~~I~~~ 117 (213)
+.++|.+++..|..+
T Consensus 201 ldevLt~~R~~I~~~ 215 (419)
T PRK10930 201 MDRILTEGRTVIRSD 215 (419)
T ss_pred HHHHhhccHHHHHHH
Confidence 346676655445433
No 138
>TIGR01933 hflK HflK protein. HflK and HflC are paralogs encoded by tandem genes in Proteobacteria, spirochetes, and some other bacterial lineages. The HflKC complex is anchored in the membrane and exposed to the periplasm. The complex is not active as a protease, but rather binds to and appears to modulate the ATP-dependent protease FtsH. The overall function of HflKC is not fully described.//Regulation of FtsH by HflKC appears to be negative (PubMed:8947034,PubMed:96367)
Probab=82.75 E-value=29 Score=29.81 Aligned_cols=6 Identities=0% Similarity=0.495 Sum_probs=2.9
Q ss_pred HHHHHH
Q 028133 103 LGNFMD 108 (213)
Q Consensus 103 I~~~Ld 108 (213)
+..++.
T Consensus 105 l~eil~ 110 (261)
T TIGR01933 105 MDDILT 110 (261)
T ss_pred HHHHHH
Confidence 344555
No 139
>COG3599 DivIVA Cell division initiation protein [Cell division and chromosome partitioning]
Probab=82.27 E-value=31 Score=29.51 Aligned_cols=29 Identities=17% Similarity=0.282 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133 130 QLEEQAAAVMRAARAEISAALTKMKKETQ 158 (213)
Q Consensus 130 ~~~~eae~~L~~Ar~ea~~Ii~~Ak~eAe 158 (213)
....+...+++.|...++.|+..+...++
T Consensus 85 ~a~~ea~~il~~a~~~a~~v~~~a~~~a~ 113 (212)
T COG3599 85 AAEAEADDILKRASAQAQRVFGKAQYKAD 113 (212)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 34444555555555555555555555544
No 140
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=82.16 E-value=19 Score=27.15 Aligned_cols=12 Identities=8% Similarity=0.454 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHh
Q 028133 89 LVLMFALDKIYY 100 (213)
Q Consensus 89 lIL~~iL~kfl~ 100 (213)
+++.++.+..+|
T Consensus 10 ~ll~~l~y~l~~ 21 (105)
T PRK00888 10 ALLVWLQYSLWF 21 (105)
T ss_pred HHHHHHHHHHhc
Confidence 333344444444
No 141
>cd03404 Band_7_HflK Band_7_HflK: The band 7 domain of flotillin (reggie) like proteins. This group includes proteins similar to prokaryotic HlfK (High frequency of lysogenization K). Although many members of the band 7 family are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflK is an integral membrane protein which may localize to the plasma membrane. HflK associates with another band 7 family member (HflC) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during la
Probab=81.64 E-value=29 Score=29.84 Aligned_cols=7 Identities=29% Similarity=0.610 Sum_probs=3.7
Q ss_pred HHHHHHH
Q 028133 103 LGNFMDE 109 (213)
Q Consensus 103 I~~~Ld~ 109 (213)
+.+++.+
T Consensus 132 ~~eil~~ 138 (266)
T cd03404 132 LDDVLTE 138 (266)
T ss_pred HHHHHHh
Confidence 4456655
No 142
>PRK09731 putative general secretion pathway protein YghD; Provisional
Probab=80.15 E-value=14 Score=30.75 Aligned_cols=34 Identities=6% Similarity=0.263 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 028133 81 LPIIMVEFLVLMFALDKIYYSPLGNFMDERDNAI 114 (213)
Q Consensus 81 l~~~lInFlIL~~iL~kfl~kpI~~~Ld~R~~~I 114 (213)
-+..++.++++++++|..+|.|+.+..+.-+..+
T Consensus 38 ~ll~~~g~vL~l~i~Y~~iWqPl~~~~~~a~~~l 71 (178)
T PRK09731 38 GMLLAAVVFLFSVGYYVLIWQPLSERIEQQETML 71 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3455678888888889999999998665444444
No 143
>COG5521 Predicted integral membrane protein [Function unknown]
Probab=80.03 E-value=2.4 Score=37.09 Aligned_cols=50 Identities=20% Similarity=0.304 Sum_probs=36.9
Q ss_pred hhhhhhhHHHHHHhhcCchhhhhhhhhcccCCccchHHHHHHHHHHHHHHHHHH
Q 028133 45 SALKSLSAVAVTSLAFSPPSLAAEIEKAALFDFNLTLPIIMVEFLVLMFALDKI 98 (213)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~a~A~e~~~g~l~~~n~tl~~~lInFlIL~~iL~kf 98 (213)
++||-+..+++|| ++.|++|+-+ =|+|.+|++.+..+=+|++++.+.+-|
T Consensus 214 asFkE~~~l~lnc--lalP~laa~a--lgff~qd~ttim~vqs~g~vLml~w~F 263 (275)
T COG5521 214 ASFKEAASLALNC--LALPALAAAA--LGFFHQDLTTIMMVQSCGVVLMLSWAF 263 (275)
T ss_pred HhHHHHHHHHHHh--hhhHHHHHHH--HHHHhhcHHHHHHHHHHHHHHHHHHHH
Confidence 4566666677777 7788988754 678999999888777777777766665
No 144
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=79.34 E-value=21 Score=25.71 Aligned_cols=55 Identities=9% Similarity=0.151 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133 85 MVEFLVLMFALDKIYYSPLGNFMDERDNAIKEKLNSVKDTSEEVKQLEEQAAAVMRAAR 143 (213)
Q Consensus 85 lInFlIL~~iL~kfl~kpI~~~Ld~R~~~I~~~l~eAe~~~~ea~~~~~eae~~L~~Ar 143 (213)
++.+.+-+.+|-.|+.+++.+. .+.+++--...+...++++....|....+.+.+
T Consensus 3 ~lI~Aiaf~vLvi~l~~~l~~l----~~~l~~~~~ti~~l~~~~~~i~~e~~~ll~~~n 57 (90)
T PF06103_consen 3 GLIAAIAFAVLVIFLIKVLKKL----KKTLDEVNKTIDTLQEQVDPITKEINDLLHNTN 57 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 4556677777778888888777 222333333333444444444444444444443
No 145
>PRK10930 FtsH protease regulator HflK; Provisional
Probab=79.16 E-value=20 Score=33.73 Aligned_cols=42 Identities=12% Similarity=0.048 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133 152 KMKKETQLEVEQKLAVGRKKIEAELQEALANLERQKEDTIKS 193 (213)
Q Consensus 152 ~Ak~eAe~e~e~il~~Ak~e~e~~~~~A~~~I~~e~~~a~~e 193 (213)
..+.+|+....+++.+|+.++++++.+|+..=+....++..+
T Consensus 263 ~~i~eAeayan~iip~A~gea~~ii~~AeAyr~~~i~~AeGd 304 (419)
T PRK10930 263 QYIREAEAYTNEVQPRANGQAQRILEEARAYKAQTILEAQGE 304 (419)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 344455556666666666666666665555444444444433
No 146
>TIGR01933 hflK HflK protein. HflK and HflC are paralogs encoded by tandem genes in Proteobacteria, spirochetes, and some other bacterial lineages. The HflKC complex is anchored in the membrane and exposed to the periplasm. The complex is not active as a protease, but rather binds to and appears to modulate the ATP-dependent protease FtsH. The overall function of HflKC is not fully described.//Regulation of FtsH by HflKC appears to be negative (PubMed:8947034,PubMed:96367)
Probab=78.84 E-value=40 Score=28.91 Aligned_cols=19 Identities=16% Similarity=0.232 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 028133 138 VMRAARAEISAALTKMKKE 156 (213)
Q Consensus 138 ~L~~Ar~ea~~Ii~~Ak~e 156 (213)
...+++.+++.++.+|+.+
T Consensus 168 ~~~~ae~~~~~~~~~a~~~ 186 (261)
T TIGR01933 168 YINEAEAYANEVVPKARGD 186 (261)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333344444444333333
No 147
>COG1862 YajC Preprotein translocase subunit YajC [Intracellular trafficking and secretion]
Probab=78.23 E-value=5.5 Score=29.97 Aligned_cols=33 Identities=9% Similarity=0.273 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 028133 84 IMVEFLVLMFALDKIYYSPLGNFMDERDNAIKE 116 (213)
Q Consensus 84 ~lInFlIL~~iL~kfl~kpI~~~Ld~R~~~I~~ 116 (213)
.++-|++++.+.|.+++.|-.+-..+|++.+.+
T Consensus 11 ~ll~~vl~~~ifyFli~RPQrKr~K~~~~ml~s 43 (97)
T COG1862 11 LLLPLVLIFAIFYFLIIRPQRKRMKEHQELLNS 43 (97)
T ss_pred HHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHh
Confidence 344444444555555789998888888876653
No 148
>TIGR01932 hflC HflC protein. HflK and HflC are paralogs encoded by tandem genes in Proteobacteria, spirochetes, and some other bacterial lineages. The HflKC complex is anchored in the membrane and exposed to the periplasm. The complex is not active as a protease, but rather binds to and appears to modulate the ATP-dependent protease FtsH. The overall function of HflKC is not fully described.//Regulation of FtsH protease appears to be negative (PubMed:8947034, PubMed:96367)
Probab=78.13 E-value=48 Score=29.66 Aligned_cols=12 Identities=25% Similarity=-0.017 Sum_probs=6.4
Q ss_pred HHHHHHHHhhcc
Q 028133 200 ALSEEIVRKVLP 211 (213)
Q Consensus 200 ~lA~~ia~KiL~ 211 (213)
.+..+..++++.
T Consensus 287 ~~~le~~~~~~~ 298 (317)
T TIGR01932 287 WRSLEAYEKSFK 298 (317)
T ss_pred HHHHHHHHHHhC
Confidence 345555565553
No 149
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=77.80 E-value=49 Score=29.12 Aligned_cols=13 Identities=23% Similarity=0.623 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHH
Q 028133 86 VEFLVLMFALDKI 98 (213)
Q Consensus 86 InFlIL~~iL~kf 98 (213)
+.|++++|.+.++
T Consensus 53 lvwgl~I~~lDR~ 65 (301)
T PF14362_consen 53 LVWGLVIFNLDRF 65 (301)
T ss_pred HHHHHHHHHHHHH
Confidence 3334444444433
No 150
>PRK06937 type III secretion system protein; Reviewed
Probab=77.58 E-value=40 Score=28.08 Aligned_cols=33 Identities=12% Similarity=0.027 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133 125 SEEVKQLEEQAAAVMRAARAEISAALTKMKKET 157 (213)
Q Consensus 125 ~~ea~~~~~eae~~L~~Ar~ea~~Ii~~Ak~eA 157 (213)
.+-++++++++++++.+|+.+.++..++.-+++
T Consensus 33 ~~il~~A~~~A~~i~~~A~~~~e~~~~~Gy~~G 65 (204)
T PRK06937 33 EELVEAARQRAEEIEAEAQEVYEQQKQLGYQAG 65 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555555555555444444433
No 151
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=77.03 E-value=75 Score=30.86 Aligned_cols=73 Identities=21% Similarity=0.376 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH-----HHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133 82 PIIMVEFLVLMFALDKIYYSPLGNFMDERDNAIK-----EKLNSVK------DTSEEVKQLEEQAAAVMRAARAEISAAL 150 (213)
Q Consensus 82 ~~~lInFlIL~~iL~kfl~kpI~~~Ld~R~~~I~-----~~l~eAe------~~~~ea~~~~~eae~~L~~Ar~ea~~Ii 150 (213)
++.++.+++.++++.|..++- .+-|+.|...|. .++..++ +....-++.+.+|..+...-=.+....+
T Consensus 6 ivi~l~~~~~~~~~rk~~~k~-i~~Le~~k~~l~~~pv~~el~kvk~l~l~Gqt~~~fe~w~~~w~~i~~~~~~~ie~~L 84 (560)
T PF06160_consen 6 IVIVLIIYIIGYIYRKRYYKE-IDELEERKNELMNLPVADELSKVKKLNLTGQTEEKFEEWRQKWDEIVTKQLPEIEEQL 84 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHcCCHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 333333333344445554544 456777777765 3444444 3344455555555555544444444444
Q ss_pred HHHHH
Q 028133 151 TKMKK 155 (213)
Q Consensus 151 ~~Ak~ 155 (213)
.++..
T Consensus 85 ~~ae~ 89 (560)
T PF06160_consen 85 FEAEE 89 (560)
T ss_pred HHHHH
Confidence 44433
No 152
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=76.37 E-value=89 Score=31.41 Aligned_cols=9 Identities=22% Similarity=0.302 Sum_probs=3.3
Q ss_pred HHHHHHHHH
Q 028133 182 NLERQKEDT 190 (213)
Q Consensus 182 ~I~~e~~~a 190 (213)
+++.|..+.
T Consensus 549 ~lE~E~~~l 557 (697)
T PF09726_consen 549 QLESELKKL 557 (697)
T ss_pred HHHHHHHHH
Confidence 333333333
No 153
>PRK06800 fliH flagellar assembly protein H; Validated
Probab=76.00 E-value=48 Score=28.09 Aligned_cols=79 Identities=13% Similarity=0.156 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 028133 131 LEEQAAAVMRAARAEISAALTKMKKETQLEVEQKLAVGRKKIEAELQEALANLERQKEDTIKSLDSQIAALSEEIVRKVL 210 (213)
Q Consensus 131 ~~~eae~~L~~Ar~ea~~Ii~~Ak~eAe~e~e~il~~Ak~e~e~~~~~A~~~I~~e~~~a~~eL~~ei~~lA~~ia~KiL 210 (213)
.++..+..+...+.+.+. ++.-+..-.++++++ .+-..+....++..+...+.++.+...+.-+-+-+-+.++|+||+
T Consensus 46 ~Q~~L~~e~~~l~~eqQ~-l~~er~~l~~er~~~-~~~~~e~~~~~e~~r~~fekekqq~~~~~t~~LwdeSi~LAEkIV 123 (228)
T PRK06800 46 QQKSLHKELNQLRQEQQK-LERERQQLLADREQF-QEHVQQQMKEIEAARQQFQKEQQETAYEWTELLWDQSFQLAEKIV 123 (228)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444443332 223333333344333 344455566667777788888888888877777777888888876
Q ss_pred c
Q 028133 211 P 211 (213)
Q Consensus 211 ~ 211 (213)
+
T Consensus 124 ~ 124 (228)
T PRK06800 124 N 124 (228)
T ss_pred H
Confidence 4
No 154
>PRK13386 fliH flagellar assembly protein H; Provisional
Probab=75.34 E-value=29 Score=29.92 Aligned_cols=37 Identities=22% Similarity=0.293 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 028133 176 LQEALANLERQKEDTIKSLDSQIAALSEEIVRKVLPV 212 (213)
Q Consensus 176 ~~~A~~~I~~e~~~a~~eL~~ei~~lA~~ia~KiL~~ 212 (213)
+......++........+++..+.+|+..++++|++.
T Consensus 102 Le~L~e~le~~l~~~~~~~~~~ll~La~~iA~~vi~~ 138 (236)
T PRK13386 102 LGALRQQLERYLAEYEQQQRDELLDLVEKVTRQVIRC 138 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555556666666778889999999999999763
No 155
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=74.71 E-value=1.1e+02 Score=31.53 Aligned_cols=33 Identities=15% Similarity=0.271 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133 145 EISAALTKMKKETQLEVEQKLAVGRKKIEAELQ 177 (213)
Q Consensus 145 ea~~Ii~~Ak~eAe~e~e~il~~Ak~e~e~~~~ 177 (213)
|.+++|+.-+++-++..-+.++.+++|.+++++
T Consensus 378 erQReiE~qrEEerkkeie~rEaar~ElEkqRq 410 (1118)
T KOG1029|consen 378 ERQREIERQREEERKKEIERREAAREELEKQRQ 410 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444333333344455555554443
No 156
>PRK13955 mscL large-conductance mechanosensitive channel; Provisional
Probab=73.63 E-value=4.3 Score=32.17 Aligned_cols=29 Identities=10% Similarity=0.278 Sum_probs=21.8
Q ss_pred ccchHHH-HHHHHHHHHHHHHHHHhhHHHHH
Q 028133 77 FNLTLPI-IMVEFLVLMFALDKIYYSPLGNF 106 (213)
Q Consensus 77 ~n~tl~~-~lInFlIL~~iL~kfl~kpI~~~ 106 (213)
+++..|+ .+|||+|+-+++ +++.+++.+.
T Consensus 64 i~yG~fl~avInFlIiA~vv-F~ivk~~nk~ 93 (130)
T PRK13955 64 IMYGNFIQTIFDFLIIAASI-FMFVKVFNKL 93 (130)
T ss_pred eeHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 4455555 589999999999 5566888775
No 157
>PRK00708 sec-independent translocase; Provisional
Probab=73.46 E-value=58 Score=27.87 Aligned_cols=8 Identities=25% Similarity=0.580 Sum_probs=5.3
Q ss_pred cCCccchH
Q 028133 74 LFDFNLTL 81 (213)
Q Consensus 74 l~~~n~tl 81 (213)
||||.|+=
T Consensus 1 MFdIG~~E 8 (209)
T PRK00708 1 MFDIGWSE 8 (209)
T ss_pred CCCccHHH
Confidence 67777653
No 158
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=73.45 E-value=32 Score=24.97 Aligned_cols=40 Identities=13% Similarity=0.206 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133 124 TSEEVKQLEEQAAAVMRAARAEISAALTKMKKETQLEVEQ 163 (213)
Q Consensus 124 ~~~ea~~~~~eae~~L~~Ar~ea~~Ii~~Ak~eAe~e~e~ 163 (213)
.+.++..+..+.+..+..+........++++..+....+.
T Consensus 3 l~~~l~~l~~d~~~l~~~~~~~~~~~~~~~r~~~~~~~~~ 42 (94)
T PF05957_consen 3 LKAELEQLRADLEDLARSAADLAGEKADEARDRAEEALDD 42 (94)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555555555544433333
No 159
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=73.44 E-value=47 Score=31.82 Aligned_cols=25 Identities=16% Similarity=0.311 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133 113 AIKEKLNSVKDTSEEVKQLEEQAAA 137 (213)
Q Consensus 113 ~I~~~l~eAe~~~~ea~~~~~eae~ 137 (213)
.++.-....++.+.+++.+..+-+.
T Consensus 60 TlrTlva~~k~~r~~~~~l~~~N~~ 84 (472)
T TIGR03752 60 TLRTLVAEVKELRKRLAKLISENEA 84 (472)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444455555444444433
No 160
>COG4768 Uncharacterized protein containing a divergent version of the methyl-accepting chemotaxis-like domain [General function prediction only]
Probab=73.27 E-value=46 Score=26.60 Aligned_cols=69 Identities=20% Similarity=0.339 Sum_probs=54.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133 80 TLPIIMVEFLVLMFALDKIYYSPLGNFMDERDNAIKEKLNSVKDTSEEVKQLEEQAAAVMRAARAEISAA 149 (213)
Q Consensus 80 tl~~~lInFlIL~~iL~kfl~kpI~~~Ld~R~~~I~~~l~eAe~~~~ea~~~~~eae~~L~~Ar~ea~~I 149 (213)
.+.+..+.|++|+.+|.+. .+.+...||+=.+.++.--.+.+-...|.+++....+...++.+.+...+
T Consensus 7 s~~iiAiAf~vL~I~li~t-lkkv~~tldevakt~~~l~~qv~gi~~eT~~Ll~K~N~L~eDvq~Kv~tl 75 (139)
T COG4768 7 SLAIIAIAFLVLVIYLIIT-LKKVSKTLDEVAKTLKGLTSQVDGITHETEELLHKTNTLAEDVQGKVATL 75 (139)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhH
Confidence 4455678888888888775 67789999999998888888888888888888888888888877766554
No 161
>PRK05585 yajC preprotein translocase subunit YajC; Validated
Probab=73.27 E-value=9.9 Score=28.90 Aligned_cols=17 Identities=12% Similarity=0.055 Sum_probs=8.7
Q ss_pred HHHHhhHHHHHHHHHHH
Q 028133 96 DKIYYSPLGNFMDERDN 112 (213)
Q Consensus 96 ~kfl~kpI~~~Ld~R~~ 112 (213)
+.+.+.|-.+--+++++
T Consensus 32 yf~~~RpqkK~~k~~~~ 48 (106)
T PRK05585 32 YFLIIRPQQKRQKEHKK 48 (106)
T ss_pred HHHhccHHHHHHHHHHH
Confidence 34456666655444433
No 162
>COG0233 Frr Ribosome recycling factor [Translation, ribosomal structure and biogenesis]
Probab=73.19 E-value=48 Score=27.85 Aligned_cols=84 Identities=14% Similarity=0.224 Sum_probs=48.6
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133 97 KIYYSPLGNFMDERDNAIKEKLNSVKDTSEEVKQLEEQAAAVMRAARAEISAALTKMKKETQLEVEQKLAVGRKKIEAEL 176 (213)
Q Consensus 97 kfl~kpI~~~Ld~R~~~I~~~l~eAe~~~~ea~~~~~eae~~L~~Ar~ea~~Ii~~Ak~eAe~e~e~il~~Ak~e~e~~~ 176 (213)
++-+||+.. +.|++-++..-..+++.+-.+...+.++...+.+...... |-++....++.+.+.+-++.=++++...
T Consensus 101 Rv~~P~lTe--ErRkelvK~~k~~~EeakvaiRniRrda~d~iKK~~K~~~-isEDe~k~~e~~iQKlTd~yi~~iD~~~ 177 (187)
T COG0233 101 RVPLPPLTE--ERRKELVKVAKKYAEEAKVAVRNIRRDANDKIKKLEKDKE-ISEDEVKKAEEEIQKLTDEYIKKIDELL 177 (187)
T ss_pred EecCCCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-cchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444666653 5566666666666666666666666666666655544321 3444555555566666666666666666
Q ss_pred HHHHHHH
Q 028133 177 QEALANL 183 (213)
Q Consensus 177 ~~A~~~I 183 (213)
+..+.+|
T Consensus 178 ~~KEkEi 184 (187)
T COG0233 178 KDKEKEI 184 (187)
T ss_pred HHHHHHH
Confidence 5555554
No 163
>PRK10780 periplasmic chaperone; Provisional
Probab=73.09 E-value=47 Score=26.72 Aligned_cols=36 Identities=8% Similarity=0.148 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133 171 KIEAELQEALANLERQKEDTIKSLDSQIAALSEEIV 206 (213)
Q Consensus 171 e~e~~~~~A~~~I~~e~~~a~~eL~~ei~~lA~~ia 206 (213)
+..+.....+.++.....+....+...+.+....++
T Consensus 98 ~~q~~~~~~qq~~~~~~~e~~~~i~~ki~~ai~~va 133 (165)
T PRK10780 98 TFSQKAQAFEQDRRRRSNEERNKILTRIQTAVKSVA 133 (165)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333444444444555555555555444444
No 164
>PRK05687 fliH flagellar assembly protein H; Validated
Probab=72.86 E-value=60 Score=27.78 Aligned_cols=36 Identities=19% Similarity=0.235 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 028133 177 QEALANLERQKEDTIKSLDSQIAALSEEIVRKVLPV 212 (213)
Q Consensus 177 ~~A~~~I~~e~~~a~~eL~~ei~~lA~~ia~KiL~~ 212 (213)
......+.........++..++.++++.++++|++.
T Consensus 116 ~~l~~~l~~~l~~l~~~ie~~Lv~Lal~ia~~vi~~ 151 (246)
T PRK05687 116 QALAAQFQEPLALLDSVIESRLVQLALELARQVIGQ 151 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344455666666777788889999999999999864
No 165
>PF04612 T2SM: Type II secretion system (T2SS), protein M; InterPro: IPR007690 General secretion pathway (GSP) protein M is a membrane protein involved in the export of proteins in bacteria. It consists of a short cytosolic N-terminal domain, a transmembrane domain, and a C-terminal periplasmic domain. The precise function of this protein is unknown, though in Vibrio cholerae, the EpsM protein interacts with the EpsL protein, and also forms homodimers [],; GO: 0006858 extracellular transport; PDB: 1UV7_A.
Probab=72.62 E-value=1.2 Score=35.46 Aligned_cols=48 Identities=10% Similarity=0.218 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133 82 PIIMVEFLVLMFALDKIYYSPLGNFMDERDNAIKEKLNSVKDTSEEVK 129 (213)
Q Consensus 82 ~~~lInFlIL~~iL~kfl~kpI~~~Ld~R~~~I~~~l~eAe~~~~ea~ 129 (213)
++.+..+++++++++.++|.|+.+..++-++++.............+.
T Consensus 18 ll~~~~~~l~~~l~~~~~~~P~~~~~~~~~~~l~~~~~~l~~l~~~~~ 65 (160)
T PF04612_consen 18 LLLVLGVVLLLALLYLLLWQPLLERRDQLQQQLQQLQQQLAWLQQQAQ 65 (160)
T ss_dssp ------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566777778888889999998888877777666555544444433
No 166
>PF10828 DUF2570: Protein of unknown function (DUF2570); InterPro: IPR022538 This entry is represented by Bacteriophage IME08, pseT.3. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This is a family of proteins with unknown function.
Probab=72.46 E-value=39 Score=25.52 Aligned_cols=14 Identities=7% Similarity=0.275 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHHHH
Q 028133 107 MDERDNAIKEKLNS 120 (213)
Q Consensus 107 Ld~R~~~I~~~l~e 120 (213)
+..+.+.-.+.+..
T Consensus 30 L~a~n~~q~~tI~q 43 (110)
T PF10828_consen 30 LRAENKAQAQTIQQ 43 (110)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 167
>PF01765 RRF: Ribosome recycling factor; InterPro: IPR023584 The ribosome recycling factor or ribosome release factor (RRF) dissociates ribosomes from mRNA after termination of translation, and is essential for bacterial growth []. Thus ribosomes are 'recycled' and ready for another round of protein synthesis. This entry represents a domain found in ribosome recycling factors.; PDB: 3R8N_Y 1Y69_8 1ISE_A 1EK8_A 1DD5_A 1WIH_A 2Z4L_6 2QBE_6 2V46_Y 1EH1_A ....
Probab=71.43 E-value=53 Score=26.55 Aligned_cols=74 Identities=12% Similarity=0.174 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133 108 DERDNAIKEKLNSVKDTSEEVKQLEEQAAAVMRAARAEISAALTKMKKETQLEVEQKLAVGRKKIEAELQEALAN 182 (213)
Q Consensus 108 d~R~~~I~~~l~eAe~~~~ea~~~~~eae~~L~~Ar~ea~~Ii~~Ak~eAe~e~e~il~~Ak~e~e~~~~~A~~~ 182 (213)
+-|++-++..-...++.+..+...+.++...+........ +-++-....+.+.+.+.++.-++++...+..+.+
T Consensus 90 E~R~~l~k~~k~~~E~~k~~iR~iR~~~~~~lkk~~~~~~-~s~D~~~~~~~~iq~l~~~~~~~id~~~~~keke 163 (165)
T PF01765_consen 90 ERRKELVKQAKKIAEEAKVSIRNIRRDAMKKLKKLKKSKE-ISEDDIKKLEKEIQKLTDKYIKKIDELLKKKEKE 163 (165)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCC-CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455555544444555555555555555555544332100 2222233344444555555555555555544443
No 168
>PF14613 DUF4449: Protein of unknown function (DUF4449)
Probab=70.56 E-value=59 Score=26.73 Aligned_cols=19 Identities=5% Similarity=0.128 Sum_probs=10.6
Q ss_pred HHHHHHHHHHhhHHHHHHH
Q 028133 90 VLMFALDKIYYSPLGNFMD 108 (213)
Q Consensus 90 IL~~iL~kfl~kpI~~~Ld 108 (213)
+|++++..++.+.|...|.
T Consensus 18 lL~~~fKPll~~~vR~alq 36 (164)
T PF14613_consen 18 LLFKLFKPLLLKVVRPALQ 36 (164)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4556666666555555443
No 169
>COG1422 Predicted membrane protein [Function unknown]
Probab=70.33 E-value=67 Score=27.31 Aligned_cols=23 Identities=17% Similarity=0.179 Sum_probs=11.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHhh
Q 028133 79 LTLPIIMVEFLVLMFALDKIYYS 101 (213)
Q Consensus 79 ~tl~~~lInFlIL~~iL~kfl~k 101 (213)
+++++..|...+..-++++++.+
T Consensus 48 lvilV~avi~gl~~~i~~~~liD 70 (201)
T COG1422 48 LVILVAAVITGLYITILQKLLID 70 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcc
Confidence 34444445555555566665543
No 170
>PRK01770 sec-independent translocase; Provisional
Probab=68.90 E-value=66 Score=26.65 Aligned_cols=7 Identities=29% Similarity=0.923 Sum_probs=4.6
Q ss_pred cCCccch
Q 028133 74 LFDFNLT 80 (213)
Q Consensus 74 l~~~n~t 80 (213)
||||.|+
T Consensus 1 MF~IG~~ 7 (171)
T PRK01770 1 MFDIGFS 7 (171)
T ss_pred CCCccHH
Confidence 6777664
No 171
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=68.28 E-value=1.2e+02 Score=29.43 Aligned_cols=77 Identities=19% Similarity=0.308 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHH-----HHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHH
Q 028133 104 GNFMDERDNAIK-----EKLNSVK------DTSEEVKQLEEQAAAVMRAARAEISAALTKMKKETQ-----------LEV 161 (213)
Q Consensus 104 ~~~Ld~R~~~I~-----~~l~eAe------~~~~ea~~~~~eae~~L~~Ar~ea~~Ii~~Ak~eAe-----------~e~ 161 (213)
.+-++.|...|. .++..+. +....-+..+.+|..+...-=.+.++.+.++...+. ...
T Consensus 31 i~~Le~~k~~l~~~pv~~el~kvk~l~l~Ges~~~f~~w~~~~~~i~~~~~~~ie~~l~~ae~~~~~~~f~~a~~~~~~~ 110 (569)
T PRK04778 31 IDELEERKQELENLPVNDELEKVKKLNLTGQSEEKFEEWRQKWDEIVTNSLPDIEEQLFEAEELNDKFRFRKAKHEINEI 110 (569)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 346777877765 4555554 333444555555555444444444444444433322 233
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 028133 162 EQKLAVGRKKIEAELQEAL 180 (213)
Q Consensus 162 e~il~~Ak~e~e~~~~~A~ 180 (213)
+..+...+.+++.+...-.
T Consensus 111 ~~~l~~~e~~~~~i~~~l~ 129 (569)
T PRK04778 111 ESLLDLIEEDIEQILEELQ 129 (569)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4445555555554444433
No 172
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=67.94 E-value=1.1e+02 Score=28.90 Aligned_cols=55 Identities=9% Similarity=0.195 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133 104 GNFMDERDNAIKEKLNSVKDTSEEVKQLEEQAAAVMRAARAEISAALTKMKKETQ 158 (213)
Q Consensus 104 ~~~Ld~R~~~I~~~l~eAe~~~~ea~~~~~eae~~L~~Ar~ea~~Ii~~Ak~eAe 158 (213)
....++|.+.++.+++.-++...+..+...+.+..|++.+.+...+.++-++.+.
T Consensus 33 ~~a~~~~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~ 87 (420)
T COG4942 33 AAADDKQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETAD 87 (420)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5566688899999999999888888899999999999999988888777665544
No 173
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=67.93 E-value=3.6 Score=31.48 Aligned_cols=41 Identities=20% Similarity=0.225 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133 131 LEEQAAAVMRAARAEISAALTKMKKETQLEVEQKLAVGRKKIEAE 175 (213)
Q Consensus 131 ~~~eae~~L~~Ar~ea~~Ii~~Ak~eAe~e~e~il~~Ak~e~e~~ 175 (213)
+..........|+.++..|++.|+.+++. ++..|+.++..+
T Consensus 72 aq~~a~~~~~~A~~eA~~i~~~A~~~a~~----i~~~A~~~~~~l 112 (131)
T PF05103_consen 72 AQETADEIKAEAEEEAEEIIEEAQKEAEE----IIEEARAEAERL 112 (131)
T ss_dssp ---------------------------------------------
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH
Confidence 34444455555555555555555554433 333444444443
No 174
>PRK13953 mscL large-conductance mechanosensitive channel; Provisional
Probab=67.86 E-value=9.8 Score=29.94 Aligned_cols=30 Identities=30% Similarity=0.568 Sum_probs=22.1
Q ss_pred ccchHHH-HHHHHHHHHHHHHHHHhhHHHHHH
Q 028133 77 FNLTLPI-IMVEFLVLMFALDKIYYSPLGNFM 107 (213)
Q Consensus 77 ~n~tl~~-~lInFlIL~~iL~kfl~kpI~~~L 107 (213)
++++.|+ .+|||+|+-+++ +++.+++.+.-
T Consensus 64 i~yG~fl~avinFlIia~vv-F~~vk~~nk~~ 94 (125)
T PRK13953 64 IQYGAFIQSIVDFLIIAFAI-FIFVKVLTSFI 94 (125)
T ss_pred eeHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 4455555 589999999998 55778887753
No 175
>PRK00404 tatB sec-independent translocase; Provisional
Probab=66.14 E-value=68 Score=25.77 Aligned_cols=7 Identities=14% Similarity=0.728 Sum_probs=4.5
Q ss_pred cCCccch
Q 028133 74 LFDFNLT 80 (213)
Q Consensus 74 l~~~n~t 80 (213)
||||.|+
T Consensus 1 MF~IG~~ 7 (141)
T PRK00404 1 MFGISFS 7 (141)
T ss_pred CCCccHH
Confidence 5777664
No 176
>PRK11677 hypothetical protein; Provisional
Probab=65.68 E-value=67 Score=25.52 Aligned_cols=39 Identities=15% Similarity=0.022 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133 128 VKQLEEQAAAVMRAARAEISAALTKMKKETQLEVEQKLA 166 (213)
Q Consensus 128 a~~~~~eae~~L~~Ar~ea~~Ii~~Ak~eAe~e~e~il~ 166 (213)
++...++|++.+.+==.+..++++.....-+..++.+-.
T Consensus 41 ~k~ele~YkqeV~~HFa~TA~Ll~~L~~~Y~~Ly~HlA~ 79 (134)
T PRK11677 41 NKAELEEYRQELVSHFARSAELLDTMAKDYRQLYQHMAK 79 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555556666666666666655555433
No 177
>cd03405 Band_7_HflC Band_7_HflC: The band 7 domain of flotillin (reggie) like proteins. This group includes proteins similar to prokaryotic HlfC (High frequency of lysogenization C). Although many members of the band 7 family are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflC is an integral membrane protein which may localize to the plasma membrane. HflC associates with another band 7 family member (HflK) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during la
Probab=65.37 E-value=64 Score=27.09 Aligned_cols=6 Identities=0% Similarity=-0.014 Sum_probs=2.8
Q ss_pred HHHHHH
Q 028133 104 GNFMDE 109 (213)
Q Consensus 104 ~~~Ld~ 109 (213)
.+++.+
T Consensus 111 ~el~~~ 116 (242)
T cd03405 111 IELVSG 116 (242)
T ss_pred HHHHHh
Confidence 344544
No 178
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=65.15 E-value=76 Score=26.02 Aligned_cols=24 Identities=8% Similarity=0.163 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHH
Q 028133 85 MVEFLVLMFALDKIYYSPLGNFMD 108 (213)
Q Consensus 85 lInFlIL~~iL~kfl~kpI~~~Ld 108 (213)
+..|.++++++.+-++.-+.+...
T Consensus 106 IsGf~LfL~l~I~r~~~li~~l~~ 129 (192)
T PF05529_consen 106 ISGFALFLSLVIRRVHSLIKELIK 129 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666666665555655554433
No 179
>PRK11029 FtsH protease regulator HflC; Provisional
Probab=64.73 E-value=74 Score=28.97 Aligned_cols=12 Identities=0% Similarity=-0.191 Sum_probs=5.6
Q ss_pred cCCccchHHHHH
Q 028133 74 LFDFNLTLPIIM 85 (213)
Q Consensus 74 l~~~n~tl~~~l 85 (213)
.+++|+.+.|.+
T Consensus 86 ~V~VD~~V~yrI 97 (334)
T PRK11029 86 DLIVDSYIKWRI 97 (334)
T ss_pred EEEEEEEEEEEE
Confidence 344555544443
No 180
>PF03938 OmpH: Outer membrane protein (OmpH-like); InterPro: IPR005632 This entry includes outer membrane proteins such as OmpH (Skp) among others. OmpH (outer membrane protein H) is a major structural protein of the outer membrane. In Pasteurella multocida it acts as a channel-forming transmembrane porin []. Porins act as molecular sieves to allow the diffusion of small hydrophilic solutes through the outer membrane and also acts as a receptor for bacteriophages and bacteriocins. Porins are highly immunogenic and are conserved in bacterial families, making them attractive vaccine candidates []. The 17kDa protein (Skp, OmpH) of Escherichia coli is a homotrimeric periplasmic chaperone for newly synthesised outer-membrane proteins, the X-ray structure of which has been reported at resolutions of 2.35 A and 2.30 A [, ]. Three hairpin-shaped alpha-helical extensions reach out by approximately 60 A from a trimerisation domain, which is composed of three intersubunit beta-sheets that wind around a central axis. The alpha-helical extensions approach each other at their distal turns, resulting in a fold that resembles a 'three-pronged grasping forcep'. The overall shape of Skp is reminiscent of the cytosolic chaperone prefoldin (IPR009053 from INTERPRO), although it is based on a radically different topology. The peculiar architecture, with apparent plasticity of the prongs and distinct electrostatic and hydrophobic surface properties, supports the recently proposed biochemical mechanism of this chaperone: formation of a Skp(3)-Omp complex protects the outer membrane protein from aggregation during passage through the bacterial periplasm. The ability of Skp to prevent the aggregation of model substrates in vitro is independent of ATP. Skp can interact directly with membrane lipids and lipopolysaccharide. These interactions are needed for efficient Skp-assisted folding of membrane proteins [].; GO: 0051082 unfolded protein binding; PDB: 1SG2_C 1U2M_C.
Probab=64.44 E-value=67 Score=25.13 Aligned_cols=20 Identities=15% Similarity=0.115 Sum_probs=9.1
Q ss_pred HhhHHHHHHHHHHHHHHHHH
Q 028133 99 YYSPLGNFMDERDNAIKEKL 118 (213)
Q Consensus 99 l~kpI~~~Ld~R~~~I~~~l 118 (213)
.++-+.+-+++..+...+.+
T Consensus 33 ~~k~~~~~l~~~~~~~~~~l 52 (158)
T PF03938_consen 33 AGKDAQAKLQEKFKALQKEL 52 (158)
T ss_dssp HHHTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444443
No 181
>PRK13954 mscL large-conductance mechanosensitive channel; Provisional
Probab=63.43 E-value=11 Score=29.43 Aligned_cols=29 Identities=24% Similarity=0.493 Sum_probs=21.8
Q ss_pred ccchHHH-HHHHHHHHHHHHHHHHhhHHHHH
Q 028133 77 FNLTLPI-IMVEFLVLMFALDKIYYSPLGNF 106 (213)
Q Consensus 77 ~n~tl~~-~lInFlIL~~iL~kfl~kpI~~~ 106 (213)
++++.|+ .+|||+|+-+++ +++.+++.+.
T Consensus 61 i~yG~fl~avinFlIiA~vv-F~~vk~~~k~ 90 (119)
T PRK13954 61 IKYGLFIQSVIDFIIIAFAL-FIFVKIANTL 90 (119)
T ss_pred ccHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 4556566 589999999988 5567777765
No 182
>PRK06397 V-type ATP synthase subunit H; Validated
Probab=62.49 E-value=66 Score=24.40 Aligned_cols=52 Identities=15% Similarity=0.259 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133 124 TSEEVKQLEEQAAAVMRAARAEISAALTKMKKETQLEVEQKLAVGRKKIEAE 175 (213)
Q Consensus 124 ~~~ea~~~~~eae~~L~~Ar~ea~~Ii~~Ak~eAe~e~e~il~~Ak~e~e~~ 175 (213)
...+..+...+.+..+.+|+.+-..-+.....+....+...+.++|++++..
T Consensus 22 ~dkEI~~~k~eqe~~iKEa~~k~ee~~~kteeE~~~~Y~~~l~e~RkeaE~k 73 (111)
T PRK06397 22 IDKEIANIKNEQENEIKEAKSKYEEKAKKTEEESLNMYNAALMEARKEAEKK 73 (111)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777778888888877777777777777777777777777776543
No 183
>TIGR01932 hflC HflC protein. HflK and HflC are paralogs encoded by tandem genes in Proteobacteria, spirochetes, and some other bacterial lineages. The HflKC complex is anchored in the membrane and exposed to the periplasm. The complex is not active as a protease, but rather binds to and appears to modulate the ATP-dependent protease FtsH. The overall function of HflKC is not fully described.//Regulation of FtsH protease appears to be negative (PubMed:8947034, PubMed:96367)
Probab=62.49 E-value=1.1e+02 Score=27.48 Aligned_cols=13 Identities=0% Similarity=-0.250 Sum_probs=6.2
Q ss_pred cccCCccchHHHH
Q 028133 72 AALFDFNLTLPII 84 (213)
Q Consensus 72 g~l~~~n~tl~~~ 84 (213)
+...++|+++.|.
T Consensus 84 ~~~V~Vd~~V~yr 96 (317)
T TIGR01932 84 KKDIIIDTYIRWR 96 (317)
T ss_pred CCEEEEEEEEEEE
Confidence 3344555555443
No 184
>PLN00063 photosystem II core complex proteins psbY; Provisional
Probab=62.01 E-value=50 Score=27.66 Aligned_cols=86 Identities=21% Similarity=0.227 Sum_probs=38.4
Q ss_pred CCCCCCCCCCcccchhhhhhhhhhh---hhhhh--HHHHHHhhcCchhhhhhhhhcccCCccchHHHH-HHHHHHHHHHH
Q 028133 22 QSPKPRIQIPQIKIPQKLLKLSSSA---LKSLS--AVAVTSLAFSPPSLAAEIEKAALFDFNLTLPII-MVEFLVLMFAL 95 (213)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~--~~~~~~~~~~~~a~A~e~~~g~l~~~n~tl~~~-lInFlIL~~iL 95 (213)
+++||-..++.-.+|+.+.--+++. .-.++ ...|..+..++++.|++ +-..+-+.|+-+++. +......-|++
T Consensus 25 ~~~~p~~~~~~~~~pk~~~~~~~~~~~~v~~~~laga~~s~l~~~~~A~AAq-~ia~~A~~D~R~liVl~Pil~AigWal 103 (194)
T PLN00063 25 TKTKPIILLSMQNKPKGLTISKSADNTNVAGTAIAGAIFSALSSSEPALAAQ-QIAELAEGDNRGLALLLPIIPAIAWVL 103 (194)
T ss_pred CCCCccccccccccccccccccccchhHHHHHHHHHHHHHhhcCCcHHHHHH-HHHHHhccCcccchhHHHHHHHHHHHH
Confidence 3555656666556777442222221 11111 23344455555666653 222333346654443 33444455555
Q ss_pred HHHHhhHHHHHHHH
Q 028133 96 DKIYYSPLGNFMDE 109 (213)
Q Consensus 96 ~kfl~kpI~~~Ld~ 109 (213)
+.+ .+|-.+-+++
T Consensus 104 fNI-g~~Al~Qlq~ 116 (194)
T PLN00063 104 FNI-LQPALNQVNK 116 (194)
T ss_pred HHh-hHHHHHHHHH
Confidence 554 3444333333
No 185
>PRK00567 mscL large-conductance mechanosensitive channel; Reviewed
Probab=61.88 E-value=13 Score=29.60 Aligned_cols=29 Identities=21% Similarity=0.494 Sum_probs=23.0
Q ss_pred ccchHHH-HHHHHHHHHHHHHHHHhhHHHHH
Q 028133 77 FNLTLPI-IMVEFLVLMFALDKIYYSPLGNF 106 (213)
Q Consensus 77 ~n~tl~~-~lInFlIL~~iL~kfl~kpI~~~ 106 (213)
++++.|+ .+|||+|+-+++ +++.+++.+.
T Consensus 71 i~yG~fl~avI~FlIia~vv-F~ivk~~n~~ 100 (134)
T PRK00567 71 INYGVFINAVIDFLIIAFAI-FLLVKLINKL 100 (134)
T ss_pred eeHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 5566666 599999999999 6678888765
No 186
>PRK13952 mscL large-conductance mechanosensitive channel; Provisional
Probab=61.77 E-value=14 Score=29.65 Aligned_cols=30 Identities=20% Similarity=0.449 Sum_probs=22.8
Q ss_pred CccchHHH-HHHHHHHHHHHHHHHHhhHHHHH
Q 028133 76 DFNLTLPI-IMVEFLVLMFALDKIYYSPLGNF 106 (213)
Q Consensus 76 ~~n~tl~~-~lInFlIL~~iL~kfl~kpI~~~ 106 (213)
.+++..|+ .+|||+|+-+++ +++.+|+.+.
T Consensus 82 ~i~yG~fl~avInFlIiA~vv-f~ivk~~nk~ 112 (142)
T PRK13952 82 VFAYGNFITVLINFLILAFII-FLMVKAINRL 112 (142)
T ss_pred cchHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 45676666 589999999999 5667787654
No 187
>TIGR00220 mscL large conductance mechanosensitive channel protein. Protein encodes a channel which opens in response to a membrane stretch force. Probably serves as an osmotic gauge. Carboxy terminus tends to be more divergent across species with a high degree of sequence conservation found at the N-terminus.
Probab=59.95 E-value=17 Score=28.72 Aligned_cols=28 Identities=18% Similarity=0.384 Sum_probs=20.6
Q ss_pred cchHHH-HHHHHHHHHHHHHHHHhhHHHHH
Q 028133 78 NLTLPI-IMVEFLVLMFALDKIYYSPLGNF 106 (213)
Q Consensus 78 n~tl~~-~lInFlIL~~iL~kfl~kpI~~~ 106 (213)
+++.|+ .+|||+|.-++++ ++.+++.+.
T Consensus 67 ~yG~fl~avInFlIiA~vvf-~~vk~~~k~ 95 (127)
T TIGR00220 67 KYGEFIQNIINFLIIAFAIF-MIIKAINKL 95 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 344455 5899999999994 566887765
No 188
>KOG0718 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=59.91 E-value=69 Score=30.86 Aligned_cols=29 Identities=21% Similarity=0.119 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 028133 82 PIIMVEFLVLMFALDKIYYSPLGNFMDER 110 (213)
Q Consensus 82 ~~~lInFlIL~~iL~kfl~kpI~~~Ld~R 110 (213)
||-+|.=++.+|.+.+|+++|-..--++|
T Consensus 378 fya~v~P~~s~F~l~k~v~rP~~~~~k~~ 406 (546)
T KOG0718|consen 378 FYALVFPITSYFGLKKFVLRPYLLKRKKR 406 (546)
T ss_pred hhhhhHHHHHHHHHHHHeecHHHHhhHhH
Confidence 34445556677889999999975443333
No 189
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=59.80 E-value=2.4e+02 Score=30.04 Aligned_cols=6 Identities=17% Similarity=0.667 Sum_probs=3.0
Q ss_pred cccCCc
Q 028133 72 AALFDF 77 (213)
Q Consensus 72 g~l~~~ 77 (213)
+.+||+
T Consensus 581 dslyGl 586 (1201)
T PF12128_consen 581 DSLYGL 586 (1201)
T ss_pred ccccee
Confidence 345553
No 190
>PRK12585 putative monovalent cation/H+ antiporter subunit G; Reviewed
Probab=59.39 E-value=1.1e+02 Score=25.92 Aligned_cols=20 Identities=15% Similarity=0.179 Sum_probs=12.2
Q ss_pred HHHHHHhhHHHHHHHHHHHH
Q 028133 94 ALDKIYYSPLGNFMDERDNA 113 (213)
Q Consensus 94 iL~kfl~kpI~~~Ld~R~~~ 113 (213)
+++-|+-.|+..-+=.|-..
T Consensus 74 IvFllLTaPVaSHaIARAAy 93 (197)
T PRK12585 74 VLFIFLTTPVASHLINRAAY 93 (197)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33446677777766666655
No 191
>PF11286 DUF3087: Protein of unknown function (DUF3087); InterPro: IPR021438 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=59.38 E-value=63 Score=26.65 Aligned_cols=33 Identities=21% Similarity=0.312 Sum_probs=19.9
Q ss_pred hhhcccCCccchHHHHHHHHHHHHHHHHHHHhhHH
Q 028133 69 IEKAALFDFNLTLPIIMVEFLVLMFALDKIYYSPL 103 (213)
Q Consensus 69 ~~~g~l~~~n~tl~~~lInFlIL~~iL~kfl~kpI 103 (213)
.++|+-|.+| ++..++..++..++++++--+|-
T Consensus 43 ~~~~~nf~~N--llGVil~~~~~~~~l~~~k~~p~ 75 (165)
T PF11286_consen 43 GESGGNFHWN--LLGVILGLLLTSALLRQLKTHPF 75 (165)
T ss_pred CCCCCceeee--HHHHHHHHHHHHHHHHHHccChH
Confidence 3456666655 55566666777777776554553
No 192
>PF08776 VASP_tetra: VASP tetramerisation domain; InterPro: IPR014885 Vasodilator-stimulated phosphoprotein (VASP) is an actin cytoskeletal regulatory protein. This region corresponds to the tetramerisation domain which forms a right handed alpha helical coiled coil structure []. ; PDB: 1USE_A 1USD_A.
Probab=59.14 E-value=41 Score=21.25 Aligned_cols=25 Identities=24% Similarity=0.307 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133 148 AALTKMKKETQLEVEQKLAVGRKKI 172 (213)
Q Consensus 148 ~Ii~~Ak~eAe~e~e~il~~Ak~e~ 172 (213)
+|+++.+.+-+..+++|++.-+.+.
T Consensus 11 EIL~EvrkEl~K~K~EIIeA~~~eL 35 (40)
T PF08776_consen 11 EILEEVRKELQKVKEEIIEAIRQEL 35 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444445555554444443
No 193
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=58.73 E-value=10 Score=29.39 Aligned_cols=18 Identities=22% Similarity=0.251 Sum_probs=8.1
Q ss_pred chHHHHHHHHHHHHHHHH
Q 028133 79 LTLPIIMVEFLVLMFALD 96 (213)
Q Consensus 79 ~tl~~~lInFlIL~~iL~ 96 (213)
|.+|+.+|.|++|++++.
T Consensus 2 W~l~~iii~~i~l~~~~~ 19 (130)
T PF12273_consen 2 WVLFAIIIVAILLFLFLF 19 (130)
T ss_pred eeeHHHHHHHHHHHHHHH
Confidence 444544444444444433
No 194
>TIGR00739 yajC preprotein translocase, YajC subunit. While this protein is part of the preprotein translocase in Escherichia coli, it is not essential for viability or protein secretion. The N-terminus region contains a predicted membrane-spanning region followed by a region consisting almost entirely of residues with charged (acidic, basic, or zwitterionic) side chains. This small protein is about 100 residues in length, and is restricted to bacteria; however, this protein is absent from some lineages, including spirochetes and Mycoplasmas.
Probab=58.73 E-value=22 Score=25.83 Aligned_cols=23 Identities=4% Similarity=0.130 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHH
Q 028133 89 LVLMFALDKIYYSPLGNFMDERD 111 (213)
Q Consensus 89 lIL~~iL~kfl~kpI~~~Ld~R~ 111 (213)
++++.+++.+.+.|-.+--++++
T Consensus 10 vv~~~i~yf~~~rpqkK~~k~~~ 32 (84)
T TIGR00739 10 VLIFLIFYFLIIRPQRKRRKAHK 32 (84)
T ss_pred HHHHHHHHHheechHHHHHHHHH
Confidence 33344444556777655444443
No 195
>PTZ00491 major vault protein; Provisional
Probab=57.54 E-value=2.4e+02 Score=29.18 Aligned_cols=10 Identities=10% Similarity=0.092 Sum_probs=4.1
Q ss_pred HHHHHhhcCc
Q 028133 53 VAVTSLAFSP 62 (213)
Q Consensus 53 ~~~~~~~~~~ 62 (213)
++.+|-.+++
T Consensus 572 vGd~Ck~iaS 581 (850)
T PTZ00491 572 VGDACKTIAS 581 (850)
T ss_pred HHHHHHHHHH
Confidence 3444433443
No 196
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=57.23 E-value=1.1e+02 Score=25.04 Aligned_cols=32 Identities=19% Similarity=0.290 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133 125 SEEVKQLEEQAAAVMRAARAEISAALTKMKKE 156 (213)
Q Consensus 125 ~~ea~~~~~eae~~L~~Ar~ea~~Ii~~Ak~e 156 (213)
+.+.+.++.+.+..-.+.+.+...+.++.+-+
T Consensus 79 r~~~e~L~~eie~l~~~L~~ei~~l~a~~klD 110 (177)
T PF07798_consen 79 RSENEKLQREIEKLRQELREEINKLRAEVKLD 110 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444433333
No 197
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=56.76 E-value=1.9e+02 Score=27.76 Aligned_cols=28 Identities=21% Similarity=0.341 Sum_probs=13.5
Q ss_pred hhhhhhhhhhhhhh-HHHHHHhhcCchhh
Q 028133 38 KLLKLSSSALKSLS-AVAVTSLAFSPPSL 65 (213)
Q Consensus 38 ~~~~~~~~~~~~~~-~~~~~~~~~~~~a~ 65 (213)
+.|.+++..-|.=. +=|+-+++|-||-.
T Consensus 180 ~~Lgikd~~hrQKlqLkalDvVLFGpp~~ 208 (575)
T KOG4403|consen 180 KVLGIKDRSHRQKLQLKALDVVLFGPPYK 208 (575)
T ss_pred hhhccCchHHHHhhhhhhcceEEecCCcC
Confidence 34444444444332 44555566665543
No 198
>PRK11029 FtsH protease regulator HflC; Provisional
Probab=56.30 E-value=1.6e+02 Score=26.82 Aligned_cols=8 Identities=13% Similarity=0.310 Sum_probs=3.6
Q ss_pred HHHHHHHH
Q 028133 103 LGNFMDER 110 (213)
Q Consensus 103 I~~~Ld~R 110 (213)
+.+.+++|
T Consensus 219 v~~ai~~~ 226 (334)
T PRK11029 219 VSDAIYNR 226 (334)
T ss_pred HHHHHHHH
Confidence 44444433
No 199
>KOG2302 consensus T-type voltage-gated Ca2+ channel, pore-forming alpha1I subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=56.02 E-value=73 Score=33.80 Aligned_cols=66 Identities=17% Similarity=0.278 Sum_probs=34.0
Q ss_pred cccCCccchHHHHHHHH--HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133 72 AALFDFNLTLPIIMVEF--LVLMFALDKIYYSPLGNFMDERDNAIKEKLNSVKDTSEEVKQLEEQAAAVMRAAR 143 (213)
Q Consensus 72 g~l~~~n~tl~~~lInF--lIL~~iL~kfl~kpI~~~Ld~R~~~I~~~l~eAe~~~~ea~~~~~eae~~L~~Ar 143 (213)
-++++-|.++++-+|.| ++.+|+|+-|+---+.++.+-|+. +++++++..-++.+...+.++.+|+
T Consensus 1352 qPI~nhnpwmllYfIsfllIvsffVlnmfVgvvvenfhKcrqh------qe~EeArRreEKrLrrlekkrR~Aq 1419 (1956)
T KOG2302|consen 1352 QPILNHNPWMLLYFISFLLIVSFFVLNMFVGVVVENFHKCRQH------QEAEEARRREEKRLRRLEKKRRAAQ 1419 (1956)
T ss_pred eccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 44555565555433333 233345555655556666666665 3444444444555555555555443
No 200
>PRK06531 yajC preprotein translocase subunit YajC; Validated
Probab=55.60 E-value=24 Score=27.19 Aligned_cols=17 Identities=18% Similarity=0.009 Sum_probs=9.3
Q ss_pred HHHHhhHHHHHHHHHHH
Q 028133 96 DKIYYSPLGNFMDERDN 112 (213)
Q Consensus 96 ~kfl~kpI~~~Ld~R~~ 112 (213)
++|++.|=.+-..++++
T Consensus 16 ~yf~iRPQkKr~Ke~~e 32 (113)
T PRK06531 16 IFFMQRQQKKQAQERQN 32 (113)
T ss_pred HHheechHHHHHHHHHH
Confidence 34567776655444444
No 201
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=55.23 E-value=98 Score=24.05 Aligned_cols=41 Identities=17% Similarity=0.054 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133 129 KQLEEQAAAVMRAARAEISAALTKMKKETQLEVEQKLAVGR 169 (213)
Q Consensus 129 ~~~~~eae~~L~~Ar~ea~~Ii~~Ak~eAe~e~e~il~~Ak 169 (213)
+...++|+..+.+==....+++++...+-+...+.+-..+.
T Consensus 38 k~el~~yk~~V~~HF~~ta~Ll~~l~~~Y~~l~~Hla~~a~ 78 (128)
T PF06295_consen 38 KQELEQYKQEVNDHFAQTAELLDNLTQDYQKLYQHLAKGAE 78 (128)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444555555555555555544444433
No 202
>PRK01433 hscA chaperone protein HscA; Provisional
Probab=55.00 E-value=1.6e+02 Score=28.88 Aligned_cols=10 Identities=20% Similarity=0.311 Sum_probs=3.9
Q ss_pred HHHHHHHHHH
Q 028133 145 EISAALTKMK 154 (213)
Q Consensus 145 ea~~Ii~~Ak 154 (213)
+.+.++..++
T Consensus 513 ~~~~~~~~~~ 522 (595)
T PRK01433 513 EAEALIFNIE 522 (595)
T ss_pred HHHHHHHHHH
Confidence 3334443333
No 203
>PRK15347 two component system sensor kinase SsrA; Provisional
Probab=54.47 E-value=2.4e+02 Score=28.25 Aligned_cols=22 Identities=32% Similarity=0.419 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHhhHHHHHHHH
Q 028133 88 FLVLMFALDKIYYSPLGNFMDE 109 (213)
Q Consensus 88 FlIL~~iL~kfl~kpI~~~Ld~ 109 (213)
.++++|++.+.+.+|+..+.+.
T Consensus 310 ~~~~~~~~~~~i~~pl~~l~~~ 331 (921)
T PRK15347 310 TSVLFLLLRRYLAKPLWRFVDI 331 (921)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455566677888766544
No 204
>PRK15354 type III secretion system protein SsaK; Provisional
Probab=54.29 E-value=1.4e+02 Score=25.66 Aligned_cols=30 Identities=13% Similarity=0.079 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133 130 QLEEQAAAVMRAARAEISAALTKMKKETQL 159 (213)
Q Consensus 130 ~~~~eae~~L~~Ar~ea~~Ii~~Ak~eAe~ 159 (213)
.+..++++++..|..+...++.++..+++.
T Consensus 49 ~A~rkA~~I~q~A~~~~~~ll~qaqqqad~ 78 (224)
T PRK15354 49 SAYRKAEKIIRDAYRYQREQKVEQQQELAC 78 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444443333
No 205
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=54.23 E-value=2.2e+02 Score=27.83 Aligned_cols=22 Identities=5% Similarity=0.102 Sum_probs=12.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHH
Q 028133 100 YSPLGNFMDERDNAIKEKLNSV 121 (213)
Q Consensus 100 ~kpI~~~Ld~R~~~I~~~l~eA 121 (213)
...+.+.+++++.+......+.
T Consensus 166 ~~~~~~~~k~~~~~w~~~~~~L 187 (555)
T TIGR03545 166 AEEIEKSLKAMQQKWKKRKKDL 187 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 4455566666666665555544
No 206
>PRK11637 AmiB activator; Provisional
Probab=54.21 E-value=1.8e+02 Score=26.91 Aligned_cols=44 Identities=11% Similarity=0.134 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Q 028133 103 LGNFMDERDNAIKEKLNSVK---DTSEEVKQLEEQAAAVMRAARAEI 146 (213)
Q Consensus 103 I~~~Ld~R~~~I~~~l~eAe---~~~~ea~~~~~eae~~L~~Ar~ea 146 (213)
+.+-+++-++.|++...+.. +...+++......+..+.....+.
T Consensus 45 ~~~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i 91 (428)
T PRK11637 45 NRDQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKL 91 (428)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444443333332 333333333333344444443333
No 207
>PRK13895 conjugal transfer protein TraM; Provisional
Probab=52.33 E-value=1.2e+02 Score=24.37 Aligned_cols=24 Identities=8% Similarity=0.101 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 028133 141 AARAEISAALTKMKKETQLEVEQK 164 (213)
Q Consensus 141 ~Ar~ea~~Ii~~Ak~eAe~e~e~i 164 (213)
+++.++++|++.+-...+.-....
T Consensus 65 dak~KAEkiLnaaLaaSKeam~~~ 88 (144)
T PRK13895 65 DAKEKAERILNAALAASKEAMAKG 88 (144)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHH
Confidence 455555555555444444433333
No 208
>PRK05886 yajC preprotein translocase subunit YajC; Validated
Probab=52.23 E-value=42 Score=25.75 Aligned_cols=22 Identities=14% Similarity=0.030 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHhhHHHHHHHHH
Q 028133 89 LVLMFALDKIYYSPLGNFMDER 110 (213)
Q Consensus 89 lIL~~iL~kfl~kpI~~~Ld~R 110 (213)
++++.++++|+..|=.+-..++
T Consensus 11 v~i~~i~yF~~iRPQkKr~K~~ 32 (109)
T PRK05886 11 LLIMGGFMYFASRRQRKAMQAT 32 (109)
T ss_pred HHHHHHHHHHHccHHHHHHHHH
Confidence 3333444455566655443333
No 209
>PRK00083 frr ribosome recycling factor; Reviewed
Probab=52.11 E-value=1.4e+02 Score=24.85 Aligned_cols=82 Identities=13% Similarity=0.194 Sum_probs=32.8
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133 98 IYYSPLGNFMDERDNAIKEKLNSVKDTSEEVKQLEEQAAAVMRAARAEISAALTKMKKETQLEVEQKLAVGRKKIEAELQ 177 (213)
Q Consensus 98 fl~kpI~~~Ld~R~~~I~~~l~eAe~~~~ea~~~~~eae~~L~~Ar~ea~~Ii~~Ak~eAe~e~e~il~~Ak~e~e~~~~ 177 (213)
.-+||+.. +.|++-++..-..+++.+..+...+.++...+....... .+-++-....+.+.+.+-+..-.+++...+
T Consensus 100 i~iP~lT~--E~R~elvK~~k~~~E~aKv~iRniRr~~~~~iKk~~k~~-~iseD~~k~~e~eiQkltd~~i~~id~~~~ 176 (185)
T PRK00083 100 LPIPPLTE--ERRKELVKQVKKEAEEAKVAIRNIRRDANDKLKKLEKDK-EISEDELKRAEDEIQKLTDKYIKKIDELLA 176 (185)
T ss_pred ecCCCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-CCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33555542 334444444444444444444444444444443332110 111222233333444444444444444444
Q ss_pred HHHHH
Q 028133 178 EALAN 182 (213)
Q Consensus 178 ~A~~~ 182 (213)
.-+.+
T Consensus 177 ~Keke 181 (185)
T PRK00083 177 AKEKE 181 (185)
T ss_pred HHHHH
Confidence 44333
No 210
>KOG2668 consensus Flotillins [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=52.01 E-value=2e+02 Score=26.77 Aligned_cols=49 Identities=14% Similarity=0.098 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133 158 QLEVEQKLAVGRKKIEAELQEALANLERQKEDTIKSLDSQIAALSEEIV 206 (213)
Q Consensus 158 e~e~e~il~~Ak~e~e~~~~~A~~~I~~e~~~a~~eL~~ei~~lA~~ia 206 (213)
+.+...|-+.++.+++++..++..-..........-|-+.+..++..++
T Consensus 321 eAEA~~ieA~akaeaeqm~~ka~v~~~y~~aa~l~~lLealp~Ia~~ia 369 (428)
T KOG2668|consen 321 EAEAFAIEADAKAEAEQMAAKAEVYQAYAQAAYLRTLLEALPMIAAEIA 369 (428)
T ss_pred hHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhc
Confidence 3344444455555555555555555444444444555555555554444
No 211
>COG4023 SBH1 Preprotein translocase subunit Sec61beta [Intracellular trafficking and secretion]
Probab=51.80 E-value=19 Score=24.49 Aligned_cols=31 Identities=10% Similarity=0.142 Sum_probs=24.4
Q ss_pred cccCCccchHHHHHHHHHHHHHHHHHHHhhH
Q 028133 72 AALFDFNLTLPIIMVEFLVLMFALDKIYYSP 102 (213)
Q Consensus 72 g~l~~~n~tl~~~lInFlIL~~iL~kfl~kp 102 (213)
++-+.+|++.+.-+..++.+++++-+++++|
T Consensus 27 ~~~ikidP~~vV~~~~av~~lvi~A~~f~p~ 57 (57)
T COG4023 27 IKGIKIDPRLVVYAGIAVAILVIAAHIFAPP 57 (57)
T ss_pred cCCcccCchhhHHHHHHHHHHHHHHHHhcCC
Confidence 4446788888888888888888888888875
No 212
>PF11382 DUF3186: Protein of unknown function (DUF3186); InterPro: IPR021522 This bacterial family of proteins has no known function.
Probab=51.48 E-value=1.1e+02 Score=27.32 Aligned_cols=46 Identities=7% Similarity=0.109 Sum_probs=28.3
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133 94 ALDKIYYSPLGNFMDERDNAIKEKLNSVKDTSEEVKQLEEQAAAVM 139 (213)
Q Consensus 94 iL~kfl~kpI~~~Ld~R~~~I~~~l~eAe~~~~ea~~~~~eae~~L 139 (213)
+-..++-+++.+-++++.+..+++.++.++..++++...+.++.-+
T Consensus 24 lG~~~l~~~l~~~l~~~~~~lr~e~~~l~~~~~~~~~~~~~~d~f~ 69 (308)
T PF11382_consen 24 LGSGPLQPNLIDSLEDQFDSLREENDELRAELDALQAQLNAADQFI 69 (308)
T ss_pred hcchhhchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344567778888887777777776666555555554444444443
No 213
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=51.16 E-value=77 Score=21.63 Aligned_cols=7 Identities=14% Similarity=0.273 Sum_probs=2.7
Q ss_pred hhHHHHH
Q 028133 100 YSPLGNF 106 (213)
Q Consensus 100 ~kpI~~~ 106 (213)
...+...
T Consensus 13 ~~~~~~~ 19 (80)
T PF04977_consen 13 ISGYSRY 19 (80)
T ss_pred cchHHHH
Confidence 3333333
No 214
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=51.15 E-value=1.5e+02 Score=27.06 Aligned_cols=10 Identities=10% Similarity=0.258 Sum_probs=5.2
Q ss_pred HHHHHHHHHH
Q 028133 103 LGNFMDERDN 112 (213)
Q Consensus 103 I~~~Ld~R~~ 112 (213)
+......|+.
T Consensus 72 ~~~~~~~r~~ 81 (409)
T TIGR00540 72 SRGWFSGRKR 81 (409)
T ss_pred HHHHHHHHHH
Confidence 4455555443
No 215
>cd03401 Band_7_prohibitin Band_7_prohibitin. A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup group includes proteins similar to prohibitin (a lipid raft-associated integral membrane protein). Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. These microdomains in addition to being stable scaffolds may also be also dynamic units with their own regulatory functions. Prohibitin is a mitochondrial inner-membrane protein which may act as a chaperone for the stabilization of mitochondrial proteins. Human prohibitin forms a heter-oligomeric complex with Bap-37 (prohibitin 2, a band 7 domain carrying homologue). This complex may protect non-assembled membrane proteins against proteolysis by the m-AAA protease. Prohibitin and Bap-37 yeast homologues have been implicated in yeast longevity and, in the maintenance of mitochondrial morphology.
Probab=51.10 E-value=56 Score=26.46 Aligned_cols=7 Identities=14% Similarity=0.525 Sum_probs=3.3
Q ss_pred HHHHHHH
Q 028133 104 GNFMDER 110 (213)
Q Consensus 104 ~~~Ld~R 110 (213)
.+++.+|
T Consensus 112 ~ei~~~R 118 (196)
T cd03401 112 EELITQR 118 (196)
T ss_pred HHHHhhH
Confidence 3455444
No 216
>PF10960 DUF2762: Protein of unknown function (DUF2762); InterPro: IPR024405 BhlA is a SP-beta prophage-derived protein found in Bacillus subtilis [, ] and other Bacilli. A related protein, UviB, has also been described in Clostridia, where it is believed to be involved in bacteriocin secretion or immunity [, ].
Probab=51.07 E-value=86 Score=22.16 Aligned_cols=10 Identities=30% Similarity=0.674 Sum_probs=4.0
Q ss_pred HHHHHHHHHH
Q 028133 109 ERDNAIKEKL 118 (213)
Q Consensus 109 ~R~~~I~~~l 118 (213)
+|+++..+-+
T Consensus 39 ~RE~kyq~~I 48 (71)
T PF10960_consen 39 EREEKYQEQI 48 (71)
T ss_pred HHHHHHHHHH
Confidence 4444433333
No 217
>cd00520 RRF Ribosome recycling factor (RRF). Ribosome recycling factor dissociates the posttermination complex, composed of the ribosome, deacylated tRNA, and mRNA, after termination of translation. Thus ribosomes are "recycled" and ready for another round of protein synthesis. RRF is believed to bind the ribosome at the A-site in a manner that mimics tRNA, but the specific mechanisms remain unclear. RRF is essential for bacterial growth. It is not necessary for cell growth in archaea or eukaryotes, but is found in mitochondria or chloroplasts of some eukaryotic species.
Probab=51.07 E-value=1.4e+02 Score=24.59 Aligned_cols=39 Identities=13% Similarity=0.381 Sum_probs=16.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133 100 YSPLGNFMDERDNAIKEKLNSVKDTSEEVKQLEEQAAAVMR 140 (213)
Q Consensus 100 ~kpI~~~Ld~R~~~I~~~l~eAe~~~~ea~~~~~eae~~L~ 140 (213)
+||+.. +-|++-++..-..+++.+..+...+.++...+.
T Consensus 98 iP~lT~--E~R~~lvK~~k~~~E~~Kv~iRniR~~~~~~lK 136 (179)
T cd00520 98 LPPLTE--ERRKELVKDAKKIAEEAKVAIRNIRRDANDKIK 136 (179)
T ss_pred CCCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455442 334444444334444444444444444444443
No 218
>PF02167 Cytochrom_C1: Cytochrome C1 family; InterPro: IPR002326 Cytochrome bc1 complex (ubiquinol:ferricytochrome c oxidoreductase) is found in mitochondria, photosynthetic bacteria and other prokaryotes. It is minimally composed of three subunits: cytochrome b, carrying a low- and a high-potential haem group; cytochrome c1 (cyt c1); and a high-potential Rieske iron-sulphur protein. The general function of the complex is electron transfer between two mobile redox carriers, ubiquinol and cytochrome c; the electron transfer is coupled with proton translocation across the membrane, thus generating proton-motive force in the form of an electrochemical potential that can drive ATP synthesis. In its structure and functions, the cytochrome bc1 complex bears extensive analogy to the cytochrome b6f complex of chloroplasts and cyanobacteria; cyt c1 plays an analogous role to cytochrome f, in spite of their different structures [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0020037 heme binding; PDB: 1P84_D 2IBZ_D 1EZV_D 3CX5_O 3CXH_O 1KB9_D 1KYO_D 1ZRT_Q 2CA4_B 2C9X_B ....
Probab=50.96 E-value=16 Score=31.34 Aligned_cols=25 Identities=28% Similarity=0.448 Sum_probs=19.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHhhHH
Q 028133 79 LTLPIIMVEFLVLMFALDKIYYSPL 103 (213)
Q Consensus 79 ~tl~~~lInFlIL~~iL~kfl~kpI 103 (213)
+.++.+++.|++|.|+++|.+|++|
T Consensus 195 ~~vl~fL~il~~l~y~~kk~~W~dV 219 (219)
T PF02167_consen 195 LKVLGFLLILTVLAYLLKKEYWSDV 219 (219)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT-
T ss_pred HHHHHHHHHHHHHHHHHHHHHccCC
Confidence 4456678888889999999999865
No 219
>PF12729 4HB_MCP_1: Four helix bundle sensory module for signal transduction; InterPro: IPR024478 This entry represents a four-helix bundle that operates as a ubiquitous sensory module in prokaryotic signal-transduction, which is known as four-helix bundles methyl-accepting chemotaxis protein (4HB_MCP) domain. The 4HB_MCP is always found between two predicted transmembrane helices indicating that it detects only extracellular signals. In many cases the domain is associated with a cytoplasmic HAMP domain suggesting that most proteins carrying the bundle might share the mechanism of transmembrane signalling which is well-characterised in E coli chemoreceptors [].
Probab=50.81 E-value=1.1e+02 Score=23.21 Aligned_cols=7 Identities=0% Similarity=-0.249 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 028133 92 MFALDKI 98 (213)
Q Consensus 92 ~~iL~kf 98 (213)
+.++..+
T Consensus 22 ~~~~~~~ 28 (181)
T PF12729_consen 22 VGIVGLY 28 (181)
T ss_pred HHHHHHH
Confidence 3333333
No 220
>COG0330 HflC Membrane protease subunits, stomatin/prohibitin homologs [Posttranslational modification, protein turnover, chaperones]
Probab=50.77 E-value=1.7e+02 Score=25.38 Aligned_cols=18 Identities=22% Similarity=0.281 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 028133 140 RAARAEISAALTKMKKET 157 (213)
Q Consensus 140 ~~Ar~ea~~Ii~~Ak~eA 157 (213)
.+++.++..++.++..++
T Consensus 207 a~g~~~a~~i~aea~~~a 224 (291)
T COG0330 207 AEGEAEAAIILAEAEAEA 224 (291)
T ss_pred hhhhHHHHHHHHHHHHHH
Confidence 566666666666666665
No 221
>PLN00077 photosystem II reaction centre W protein; Provisional
Probab=50.75 E-value=29 Score=27.12 Aligned_cols=50 Identities=20% Similarity=0.353 Sum_probs=29.1
Q ss_pred HHHHHHhhcCchhhhh--h----hhhcccCCccch-HHHHHHHHHHHHHHHHHHHhh
Q 028133 52 AVAVTSLAFSPPSLAA--E----IEKAALFDFNLT-LPIIMVEFLVLMFALDKIYYS 101 (213)
Q Consensus 52 ~~~~~~~~~~~~a~A~--e----~~~g~l~~~n~t-l~~~lInFlIL~~iL~kfl~k 101 (213)
+.+.....++.|++|= | -+.|..|++|-. +.|.++..+-|+|-+|....+
T Consensus 59 a~~~a~~a~a~PA~AlVDeRlsteGtGl~lGlsn~~LgwIL~gVf~liw~ly~~~~~ 115 (128)
T PLN00077 59 VTSAATMAYAHPAFALVDERMSTEGTGLSLGLSNNLLGWILLGVFGLIWSLYTTYTS 115 (128)
T ss_pred HHHHHHHhccccHHHHHhHhhcCCCccccccccCchhhHHHHhHHHHHHHHHhheec
Confidence 3333456788888873 1 123556787764 456666666667766655443
No 222
>TIGR00496 frr ribosome recycling factor. This model finds only eubacterial proteins. Mitochondrial and/or chloroplast forms might be expected but are not currently known. This protein was previously called ribosome releasing factor. By releasing ribosomes from mRNA at the end of protein biosynthesis, it prevents inappropriate translation from 3-prime regions of the mRNA and frees the ribosome for new rounds of translation. EGAD|53116|YHR038W is part of the frr superfamily.
Probab=50.68 E-value=1.4e+02 Score=24.57 Aligned_cols=83 Identities=14% Similarity=0.249 Sum_probs=33.1
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133 97 KIYYSPLGNFMDERDNAIKEKLNSVKDTSEEVKQLEEQAAAVMRAARAEISAALTKMKKETQLEVEQKLAVGRKKIEAEL 176 (213)
Q Consensus 97 kfl~kpI~~~Ld~R~~~I~~~l~eAe~~~~ea~~~~~eae~~L~~Ar~ea~~Ii~~Ak~eAe~e~e~il~~Ak~e~e~~~ 176 (213)
++-+||+.. +-|++-++..-..+++.+..+...+.++...+...... ..+-++-....+.+.+.+-+..-.+++...
T Consensus 90 ri~iP~lT~--E~RkelvK~~k~~~E~aKv~iRniRr~~~~~iKk~~k~-~~iseD~~k~~~~~iQkltd~~i~~id~~~ 166 (176)
T TIGR00496 90 RVNFPPLTE--ERRKELVKHAKKIAEQAKVAVRNVRRDANDKVKKLEKD-KEISEDEERRLQEEIQKLTDEYIKKIDEIL 166 (176)
T ss_pred EecCCCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCChhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555542 33444444333444444444444444444443333211 112223333334444444444444444444
Q ss_pred HHHHHH
Q 028133 177 QEALAN 182 (213)
Q Consensus 177 ~~A~~~ 182 (213)
+.-+.+
T Consensus 167 ~~Keke 172 (176)
T TIGR00496 167 KDKEKE 172 (176)
T ss_pred HHHHHH
Confidence 443333
No 223
>KOG4759 consensus Ribosome recycling factor [Translation, ribosomal structure and biogenesis]
Probab=50.67 E-value=1.4e+02 Score=26.44 Aligned_cols=66 Identities=18% Similarity=0.198 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133 126 EEVKQLEEQAAAVMRAARAEISAALTKMKKETQLEVEQKLAVGRKKIEAELQEALANLERQKEDTIKSL 194 (213)
Q Consensus 126 ~ea~~~~~eae~~L~~Ar~ea~~Ii~~Ak~eAe~e~e~il~~Ak~e~e~~~~~A~~~I~~e~~~a~~eL 194 (213)
..+...-++|...+...|.+..+-+...... ..+.-...++++++.+...+...++...+...++|
T Consensus 195 K~~~~~~ee~K~slr~ir~~~~kk~~k~~~~---~~~D~vkkae~~l~~l~k~~v~~ld~llkskeKel 260 (263)
T KOG4759|consen 195 KVLKRYFEEYKQSLRKIRTKSIKKSKKNKKS---LSEDEVKKAEAELQKLAKDAVNKLDDLLKSKEKEL 260 (263)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccc---CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344556666777777766666555544443 33444555666666666666666666655555544
No 224
>PLN02956 PSII-Q subunit
Probab=49.83 E-value=1.6e+02 Score=24.80 Aligned_cols=37 Identities=8% Similarity=0.153 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 028133 86 VEFLVLMFALDKIYYSPLGNFMDERDNAIKEKLNSVK 122 (213)
Q Consensus 86 InFlIL~~iL~kfl~kpI~~~Ld~R~~~I~~~l~eAe 122 (213)
-+.+=|--++.+--|+-+.++|.-+-.....++..+-
T Consensus 94 ~~l~~LK~LI~k~~W~yvrn~LRgp~s~Lr~DL~~Ii 130 (185)
T PLN02956 94 ENLLRVKALIESESWKEAQKALRRSASNLKQDLYAII 130 (185)
T ss_pred HHHHHHHHHhhhccHHHHHHHHHccHHHHHHHHHHHH
Confidence 3444455577777799999999999999888887765
No 225
>PF07123 PsbW: Photosystem II reaction centre W protein (PsbW); InterPro: IPR009806 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbW found in PSII, where it is a subunit of the oxygen-evolving complex. PsbW appears to have several roles, including guiding PSII biogenesis and assembly, stabilising dimeric PSII [], and facilitating PSII repair after photo-inhibition []. There appears to be two classes of PsbW, class 1 being found predominantly in algae and cyanobacteria, and class 2 being found predominantly in plants. This entry represents class 2 PsbW.; GO: 0015979 photosynthesis, 0009507 chloroplast, 0009523 photosystem II
Probab=49.60 E-value=65 Score=25.77 Aligned_cols=45 Identities=22% Similarity=0.283 Sum_probs=26.8
Q ss_pred hhcCchhhhh------hhhhcccCCccch-HHHHHHHHHHHHHHHHHHHhhH
Q 028133 58 LAFSPPSLAA------EIEKAALFDFNLT-LPIIMVEFLVLMFALDKIYYSP 102 (213)
Q Consensus 58 ~~~~~~a~A~------e~~~g~l~~~n~t-l~~~lInFlIL~~iL~kfl~kp 102 (213)
+..+.|++|= .-+.|..|++|-. +.|.++..+-|+|-||....+-
T Consensus 76 ~a~a~PA~ALVDeRlsteGTGL~lGlsn~~LgwIL~gVf~lIWslY~~~~~~ 127 (138)
T PF07123_consen 76 AATASPALALVDERLSTEGTGLPLGLSNNLLGWILLGVFGLIWSLYFVYTST 127 (138)
T ss_pred HhhcCcHHHHHHHHhcCCCccccccccCchhHHHHHHHHHHHHHHHHhhccc
Confidence 3447788873 1123556888764 5566666666777776654443
No 226
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=48.91 E-value=2.7e+02 Score=27.36 Aligned_cols=41 Identities=12% Similarity=0.153 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133 110 RDNAIKEKLNSVKDTSEEVKQLEEQAAAVMRAARAEISAAL 150 (213)
Q Consensus 110 R~~~I~~~l~eAe~~~~ea~~~~~eae~~L~~Ar~ea~~Ii 150 (213)
+.+.++..+.+.+...+++.+...+.+..+..++.+..+..
T Consensus 210 ~~~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l~ 250 (650)
T TIGR03185 210 EIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLE 250 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444443344433344444444444444444333
No 227
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=48.90 E-value=2.7e+02 Score=27.29 Aligned_cols=19 Identities=26% Similarity=0.254 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 028133 154 KKETQLEVEQKLAVGRKKI 172 (213)
Q Consensus 154 k~eAe~e~e~il~~Ak~e~ 172 (213)
..+...+++.+....++++
T Consensus 251 i~eiRaqye~~~~~nR~di 269 (546)
T KOG0977|consen 251 IREIRAQYEAISRQNRKDI 269 (546)
T ss_pred HHHHHHHHHHHHHHhHHHH
Confidence 3333333333333333333
No 228
>PRK14857 tatA twin arginine translocase protein A; Provisional
Probab=48.61 E-value=1.1e+02 Score=22.67 Aligned_cols=9 Identities=22% Similarity=0.456 Sum_probs=5.3
Q ss_pred ccCCccchH
Q 028133 73 ALFDFNLTL 81 (213)
Q Consensus 73 ~l~~~n~tl 81 (213)
.||++.|+-
T Consensus 2 ~mF~iG~~E 10 (90)
T PRK14857 2 NIFGIGLPE 10 (90)
T ss_pred CcccccHHH
Confidence 367766653
No 229
>PF12669 P12: Virus attachment protein p12 family
Probab=47.05 E-value=18 Score=24.49 Aligned_cols=20 Identities=5% Similarity=0.165 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 028133 81 LPIIMVEFLVLMFALDKIYY 100 (213)
Q Consensus 81 l~~~lInFlIL~~iL~kfl~ 100 (213)
+++.+|.+++++|++.+.+|
T Consensus 2 iII~~Ii~~~~~~v~~r~~~ 21 (58)
T PF12669_consen 2 IIIGIIILAAVAYVAIRKFI 21 (58)
T ss_pred eeHHHHHHHHHHHHHHHHHH
Confidence 34445555555555433333
No 230
>PRK06771 hypothetical protein; Provisional
Probab=46.81 E-value=1.2e+02 Score=22.72 Aligned_cols=22 Identities=14% Similarity=0.309 Sum_probs=15.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH
Q 028133 101 SPLGNFMDERDNAIKEKLNSVK 122 (213)
Q Consensus 101 kpI~~~Ld~R~~~I~~~l~eAe 122 (213)
.-+.+.++.|.++++..++...
T Consensus 22 ~~~~~~~~~~~k~ie~~L~~I~ 43 (93)
T PRK06771 22 TKIEKKTDARLKRMEDRLQLIT 43 (93)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677778888887777664
No 231
>PRK14858 tatA twin arginine translocase protein A; Provisional
Probab=45.18 E-value=1.4e+02 Score=22.89 Aligned_cols=7 Identities=14% Similarity=0.676 Sum_probs=4.0
Q ss_pred cCCccch
Q 028133 74 LFDFNLT 80 (213)
Q Consensus 74 l~~~n~t 80 (213)
||+|.|+
T Consensus 1 MF~iG~~ 7 (108)
T PRK14858 1 MFGIGMP 7 (108)
T ss_pred CCCccHH
Confidence 5666554
No 232
>cd03407 Band_7_4 A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H
Probab=44.88 E-value=2e+02 Score=24.69 Aligned_cols=14 Identities=14% Similarity=0.532 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHH
Q 028133 103 LGNFMDERDNAIKEK 117 (213)
Q Consensus 103 I~~~Ld~R~~~I~~~ 117 (213)
+.+++.+| +.|...
T Consensus 102 l~eil~~R-~~I~~~ 115 (262)
T cd03407 102 LDELFEQK-DEIAKA 115 (262)
T ss_pred HHHHHhhH-HHHHHH
Confidence 34566666 344444
No 233
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=44.65 E-value=2.3e+02 Score=25.18 Aligned_cols=57 Identities=14% Similarity=0.345 Sum_probs=31.0
Q ss_pred HHHHHHHH-HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133 85 MVEFLVLM-FALDKIYYSPLGNFMDERDNAIKEKLNSVKDTSEEVKQLEEQAAAVMRA 141 (213)
Q Consensus 85 lInFlIL~-~iL~kfl~kpI~~~Ld~R~~~I~~~l~eAe~~~~ea~~~~~eae~~L~~ 141 (213)
+..|+++. .+++-..-.++...+.+-+..+.+-..+-.....+++.+..+.+....+
T Consensus 10 ~~s~v~~s~~~~t~V~a~~~~~~i~~~ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k 67 (265)
T COG3883 10 LLSLVIISTAFLTTVFAALLSDKIQNQDSKLSELQKEKKNIQNEIESLDNQIEEIQSK 67 (265)
T ss_pred HHHHHHHHHhhcchhhhhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444 3444444445555577777777666655555555555555555544433
No 234
>KOG4759 consensus Ribosome recycling factor [Translation, ribosomal structure and biogenesis]
Probab=44.56 E-value=2.3e+02 Score=25.16 Aligned_cols=73 Identities=10% Similarity=0.155 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133 108 DERDNAIKEKLNSVKDTSEEVKQLEEQAAAVMRAARAEISAALTKMKKETQLEVEQKLAVGRKKIEAELQEALANL 183 (213)
Q Consensus 108 d~R~~~I~~~l~eAe~~~~ea~~~~~eae~~L~~Ar~ea~~Ii~~Ak~eAe~e~e~il~~Ak~e~e~~~~~A~~~I 183 (213)
+-|++-.+..-...+++++.+.+.+.+.-..+...... .-++.-..++.+.+.+...+-++++..++..+.+|
T Consensus 188 E~Re~laK~~~~~~ee~K~slr~ir~~~~kk~~k~~~~---~~~D~vkkae~~l~~l~k~~v~~ld~llkskeKel 260 (263)
T KOG4759|consen 188 ESREKLAKVLKRYFEEYKQSLRKIRTKSIKKSKKNKKS---LSEDEVKKAEAELQKLAKDAVNKLDDLLKSKEKEL 260 (263)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc---CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444443333444566666666666665555555443 45556666677777777777777777777776665
No 235
>PHA02650 hypothetical protein; Provisional
Probab=44.52 E-value=14 Score=26.80 Aligned_cols=32 Identities=13% Similarity=0.164 Sum_probs=14.7
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 028133 77 FNLTLPIIMVEFLVLMFALDKIYYSPLGNFMD 108 (213)
Q Consensus 77 ~n~tl~~~lInFlIL~~iL~kfl~kpI~~~Ld 108 (213)
+.|.+++.++.+++++.++..+..|-+...+.
T Consensus 47 ~~~~~~ii~i~~v~i~~l~~flYLK~~~r~~~ 78 (81)
T PHA02650 47 FNGQNFIFLIFSLIIVALFSFFVFKGYTRNLN 78 (81)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhccccC
Confidence 34554444444444444444444444444443
No 236
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=44.46 E-value=1.3e+02 Score=22.50 Aligned_cols=20 Identities=10% Similarity=0.012 Sum_probs=9.5
Q ss_pred cchHHHHHH--HHHHHHHHHHH
Q 028133 78 NLTLPIIMV--EFLVLMFALDK 97 (213)
Q Consensus 78 n~tl~~~lI--nFlIL~~iL~k 97 (213)
||.+++.++ .+.++++.+.+
T Consensus 8 ~w~ii~a~~~~~~~~~~~~l~~ 29 (106)
T PF10805_consen 8 NWGIIWAVFGIAGGIFWLWLRR 29 (106)
T ss_pred CcHHHHHHHHHHHHHHHHHHHH
Confidence 566665433 34444444444
No 237
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=44.38 E-value=2.5e+02 Score=25.57 Aligned_cols=10 Identities=10% Similarity=0.172 Sum_probs=4.9
Q ss_pred HHHHHHHHHH
Q 028133 103 LGNFMDERDN 112 (213)
Q Consensus 103 I~~~Ld~R~~ 112 (213)
+......|+.
T Consensus 72 ~~~~~~~rr~ 81 (398)
T PRK10747 72 TRGWFVGRKR 81 (398)
T ss_pred hhHHHHHHHH
Confidence 3455555444
No 238
>PF12732 YtxH: YtxH-like protein; InterPro: IPR024623 This family of uncharacterised proteins is found in bacteria. Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved.
Probab=44.08 E-value=1.1e+02 Score=21.23 Aligned_cols=17 Identities=12% Similarity=0.002 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHhhH
Q 028133 86 VEFLVLMFALDKIYYSP 102 (213)
Q Consensus 86 InFlIL~~iL~kfl~kp 102 (213)
+.++.++....-+++.|
T Consensus 5 ~l~Ga~~Ga~~glL~aP 21 (74)
T PF12732_consen 5 FLAGAAAGAAAGLLFAP 21 (74)
T ss_pred HHHHHHHHHHHHHHhCC
Confidence 34444444444445444
No 239
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional
Probab=44.01 E-value=3.3e+02 Score=26.89 Aligned_cols=10 Identities=0% Similarity=0.159 Sum_probs=3.8
Q ss_pred HHHHHHHHHH
Q 028133 112 NAIKEKLNSV 121 (213)
Q Consensus 112 ~~I~~~l~eA 121 (213)
..+..-....
T Consensus 85 ~~l~~~~~~l 94 (779)
T PRK11091 85 QRLSRLVAKL 94 (779)
T ss_pred HHHHHHHHHH
Confidence 3344333333
No 240
>PF01086 Clathrin_lg_ch: Clathrin light chain; InterPro: IPR000996 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents clathrin light chains, which are more divergent in sequence than the heavy chains []. In higher eukaryotes, two genes encode distinct but related light chains, each of which can yield two separate forms via alternative splicing. In yeast there is a single light chain whose sequence is only distantly related to that of higher eukaryotes. Clathrin light chains have a conserved acidic N-terminal domain, a central coiled-coil domain and a conserved C-terminal domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030130 clathrin coat of trans-Golgi network vesicle, 0030132 clathrin coat of coated pit; PDB: 3LVG_E 3LVH_D.
Probab=43.90 E-value=52 Score=28.12 Aligned_cols=14 Identities=29% Similarity=0.620 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHH
Q 028133 102 PLGNFMDERDNAIK 115 (213)
Q Consensus 102 pI~~~Ld~R~~~I~ 115 (213)
+|...-++|..+|.
T Consensus 113 ~ireWre~~~~~i~ 126 (225)
T PF01086_consen 113 AIREWREERDKRIE 126 (225)
T ss_dssp HHHHHHHHHTTTST
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444443
No 241
>PF13334 DUF4094: Domain of unknown function (DUF4094)
Probab=43.80 E-value=32 Score=25.63 Aligned_cols=24 Identities=17% Similarity=0.357 Sum_probs=18.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHhhH
Q 028133 79 LTLPIIMVEFLVLMFALDKIYYSP 102 (213)
Q Consensus 79 ~tl~~~lInFlIL~~iL~kfl~kp 102 (213)
|.+++-+..|++-++|-++++..|
T Consensus 4 w~l~Lc~~SF~~G~lft~R~W~~p 27 (95)
T PF13334_consen 4 WVLLLCIASFCAGMLFTNRMWTVP 27 (95)
T ss_pred HHHHHHHHHHHHHHHHhcccccCC
Confidence 566667888888888888876445
No 242
>PLN00092 photosystem I reaction center subunit V (PsaG); Provisional
Probab=43.20 E-value=74 Score=25.15 Aligned_cols=47 Identities=21% Similarity=0.272 Sum_probs=25.8
Q ss_pred HHHHHHhhcCchhhhh--h----hhhcccCCccch-HHHHHHHHHHHHHHHHHH
Q 028133 52 AVAVTSLAFSPPSLAA--E----IEKAALFDFNLT-LPIIMVEFLVLMFALDKI 98 (213)
Q Consensus 52 ~~~~~~~~~~~~a~A~--e----~~~g~l~~~n~t-l~~~lInFlIL~~iL~kf 98 (213)
+.+....+.+.|++|= | -+.|..|++|-. +.|.++..+-++|-+|..
T Consensus 69 Aaa~a~a~~a~PA~AlVDeRlsteGTGlplGlsn~~LgwIL~gVf~lIWslYf~ 122 (137)
T PLN00092 69 AAACAVAMSASPAMALVDERMSTEGTGLPFGLSNNLLGWILLGVFGLIWSLYFV 122 (137)
T ss_pred HHHHHHHhhcCcHHHHHHHhhcCCCccccccccCcchhhHHHhHHHHHHHHHhe
Confidence 3333444455688763 1 123456787754 556666666666666554
No 243
>PF13801 Metal_resist: Heavy-metal resistance; PDB: 3EPV_C 2Y3D_A 2Y3H_D 2Y3G_B 2Y3B_A 2Y39_A 3LAY_H.
Probab=40.94 E-value=1.3e+02 Score=21.51 Aligned_cols=27 Identities=26% Similarity=0.402 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133 122 KDTSEEVKQLEEQAAAVMRAARAEISA 148 (213)
Q Consensus 122 e~~~~ea~~~~~eae~~L~~Ar~ea~~ 148 (213)
.+.+.++.+...++.......+.+...
T Consensus 44 ~eQ~~~l~~~~~~~~~~~~~~r~~~~~ 70 (125)
T PF13801_consen 44 PEQQAKLRALMDEFRQEMRALRQELRA 70 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444333
No 244
>PF08566 Pam17: Mitochondrial import protein Pam17; InterPro: IPR013875 The presequence translocase-associated motor (PAM) drives the completion of preprotein translocation into the mitochondrial matrix. The Pam17 subunit is required for formation of a stable complex between cochaperones Pam16 and Pam18 and promotes the association of Pam16-Pam18 with the presequence translocase []. Mitochondria lacking Pam17 are selectively impaired in the import of matrix proteins [].
Probab=40.86 E-value=2.1e+02 Score=23.76 Aligned_cols=38 Identities=3% Similarity=0.024 Sum_probs=24.0
Q ss_pred hcccCCccchHHH--HHHHHHHHHHHHHHHHhhHHHHHHH
Q 028133 71 KAALFDFNLTLPI--IMVEFLVLMFALDKIYYSPLGNFMD 108 (213)
Q Consensus 71 ~g~l~~~n~tl~~--~lInFlIL~~iL~kfl~kpI~~~Ld 108 (213)
...+|++|+-++. ..+.+..+-|++..++...+-+.+.
T Consensus 68 ~~~I~GlDP~~~~g~~t~a~g~lG~L~GP~~G~~vf~l~~ 107 (173)
T PF08566_consen 68 TQQIMGLDPFMVYGLATLACGALGWLVGPSLGNQVFRLLN 107 (173)
T ss_pred cccccCcCHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHh
Confidence 3557799976554 4567777777776666555544443
No 245
>PF01765 RRF: Ribosome recycling factor; InterPro: IPR023584 The ribosome recycling factor or ribosome release factor (RRF) dissociates ribosomes from mRNA after termination of translation, and is essential for bacterial growth []. Thus ribosomes are 'recycled' and ready for another round of protein synthesis. This entry represents a domain found in ribosome recycling factors.; PDB: 3R8N_Y 1Y69_8 1ISE_A 1EK8_A 1DD5_A 1WIH_A 2Z4L_6 2QBE_6 2V46_Y 1EH1_A ....
Probab=40.78 E-value=1.9e+02 Score=23.24 Aligned_cols=69 Identities=20% Similarity=0.290 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133 125 SEEVKQLEEQAAAVMRAARAEISAALTKMKKETQLEVEQKLAVGRKKIEAELQEALANLERQKEDTIKSL 194 (213)
Q Consensus 125 ~~ea~~~~~eae~~L~~Ar~ea~~Ii~~Ak~eAe~e~e~il~~Ak~e~e~~~~~A~~~I~~e~~~a~~eL 194 (213)
..++.+..+++...++..|.++.+-+........ ..+......+++++...+....+++.......++|
T Consensus 96 ~k~~k~~~E~~k~~iR~iR~~~~~~lkk~~~~~~-~s~D~~~~~~~~iq~l~~~~~~~id~~~~~kekel 164 (165)
T PF01765_consen 96 VKQAKKIAEEAKVSIRNIRRDAMKKLKKLKKSKE-ISEDDIKKLEKEIQKLTDKYIKKIDELLKKKEKEL 164 (165)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCC-CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444445555555555555555554444332210 23344455667777777777777766666655543
No 246
>COG2011 AbcD ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism]
Probab=40.77 E-value=48 Score=28.56 Aligned_cols=50 Identities=24% Similarity=0.308 Sum_probs=28.7
Q ss_pred CchhhhhhhhhcccCC---------ccchHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 028133 61 SPPSLAAEIEKAALFD---------FNLTLPIIMVEFLVLMFALDKIYYSPLGNFMDER 110 (213)
Q Consensus 61 ~~~a~A~e~~~g~l~~---------~n~tl~~~lInFlIL~~iL~kfl~kpI~~~Ld~R 110 (213)
-..|+|.-.++||+=| ||+++.+..+..+++++.+..++-+.+.+.+++|
T Consensus 164 g~SAMAGaIGgGGLGdlAiryGY~Rf~~~Vm~~~viillilVq~iQ~~Gd~l~~r~~kr 222 (222)
T COG2011 164 GYSAMAGAIGGGGLGDLAIRYGYQRFNTDVMVVAVVILLILVQLIQSLGDRLVRRLDKR 222 (222)
T ss_pred hHHHHhcccccCchhHHHHHHhHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3466666566666544 5666666555555555555555555555555543
No 247
>PF04011 LemA: LemA family; InterPro: IPR007156 The members of this family are related to the LemA protein P71452 from SWISSPROT. The exact molecular function of this protein is uncertain. It is predicted to be a transmembrane protein with an extracellular N terminus [].; PDB: 2ETD_A.
Probab=40.63 E-value=2e+02 Score=23.41 Aligned_cols=25 Identities=20% Similarity=0.295 Sum_probs=17.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Q 028133 100 YSPLGNFMDERDNAIKEKLNSVKDT 124 (213)
Q Consensus 100 ~kpI~~~Ld~R~~~I~~~l~eAe~~ 124 (213)
|..|...+..|.+.|.+-++-++.+
T Consensus 36 ~s~I~~~l~rR~dli~~Lv~~v~~y 60 (186)
T PF04011_consen 36 WSNIDVQLQRRHDLIPNLVEIVKSY 60 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677777888888877776666543
No 248
>PRK09702 PTS system arbutin-specific transporter subunit IIB; Provisional
Probab=40.60 E-value=35 Score=27.90 Aligned_cols=23 Identities=22% Similarity=0.170 Sum_probs=13.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhH
Q 028133 80 TLPIIMVEFLVLMFALDKIYYSP 102 (213)
Q Consensus 80 tl~~~lInFlIL~~iL~kfl~kp 102 (213)
+.++..+.|+++||++++|+.+.
T Consensus 11 ~~i~iGl~~f~iYyfvF~flI~k 33 (161)
T PRK09702 11 TQIAIGLCFTLLYFVVFRTLILQ 33 (161)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445566666666666666543
No 249
>KOG4031 consensus Vesicle coat protein clathrin, light chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=40.30 E-value=2.4e+02 Score=24.21 Aligned_cols=16 Identities=19% Similarity=0.424 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHH
Q 028133 102 PLGNFMDERDNAIKEK 117 (213)
Q Consensus 102 pI~~~Ld~R~~~I~~~ 117 (213)
+|.+.=+++..+|.+.
T Consensus 107 ~IRkWkeeQ~~rl~ek 122 (216)
T KOG4031|consen 107 KIRKWKEEQMKRLQEK 122 (216)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 4555555555555443
No 250
>PF00672 HAMP: HAMP domain; InterPro: IPR003660 The HAMP linker domain (present in Histidine kinases, Adenyl cyclases, Methyl-accepting proteins and Phosphatases) is an approximately 50-amino acid alpha-helical region. It is found in bacterial sensor and chemotaxis proteins and in eukaryotic histidine kinases. The bacterial proteins are usually integral membrane proteins and part of a two-component signal transduction pathway. One or several copies of the HAMP domain can be found in association with other domains, such as the histidine kinase domain, the bacterial chemotaxis sensory transducer domain, the PAS repeat, the EAL domain, the GGDEF domain, the protein phosphatase 2C-like domain, the guanylate cyclase domain, or the response regulatory domain. It has been suggested that the HAMP domain possesses a role of regulating the phosphorylation or methylation of homodimeric receptors by transmitting the conformational changes in periplasmic ligand-binding domains to cytoplasmic signalling kinase and methyl-acceptor domains.; GO: 0004871 signal transducer activity, 0007165 signal transduction, 0016021 integral to membrane; PDB: 3PJX_A 3PJW_A 3ZX6_B 2Y20_B 2Y0Q_D 2Y21_H 3ZRW_C 2L7H_B 2LFS_B 2L7I_B ....
Probab=40.08 E-value=29 Score=22.93 Aligned_cols=27 Identities=30% Similarity=0.416 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 028133 82 PIIMVEFLVLMFALDKIYYSPLGNFMD 108 (213)
Q Consensus 82 ~~~lInFlIL~~iL~kfl~kpI~~~Ld 108 (213)
++.++..+++.|++.+.+.+|+.+.-+
T Consensus 6 ~~~~~~~~~~~~~~~~~i~~pl~~l~~ 32 (70)
T PF00672_consen 6 LIILLLSLLLAWLLARRITRPLRRLSD 32 (70)
T ss_dssp HHHHHHHHHHHHH--HTTCCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666667777888889887654
No 251
>TIGR03142 cytochro_ccmI cytochrome c-type biogenesis protein CcmI. This TPR repeat-containing protein is the CcmI protein (also called CycH) of c-type cytochrome biogenesis. CcmI is thought to act as an apo-cytochrome c chaperone. This model describes the N-terminal region of the protein, Members of this protein family
Probab=39.65 E-value=1.4e+02 Score=22.67 Aligned_cols=11 Identities=18% Similarity=0.395 Sum_probs=4.3
Q ss_pred HHHHHHHHHHH
Q 028133 124 TSEEVKQLEEQ 134 (213)
Q Consensus 124 ~~~ea~~~~~e 134 (213)
+++++.++..+
T Consensus 41 yr~qL~ELe~d 51 (117)
T TIGR03142 41 YRDRLAELERD 51 (117)
T ss_pred HHHHHHHHHHH
Confidence 34444444333
No 252
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=39.44 E-value=3.1e+02 Score=25.27 Aligned_cols=20 Identities=15% Similarity=0.346 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 028133 186 QKEDTIKSLDSQIAALSEEI 205 (213)
Q Consensus 186 e~~~a~~eL~~ei~~lA~~i 205 (213)
...++...|+.++..+-+.|
T Consensus 332 ~IKqAl~kLk~EI~qMdvrI 351 (359)
T PF10498_consen 332 KIKQALTKLKQEIKQMDVRI 351 (359)
T ss_pred HHHHHHHHHHHHHHHhhhhh
Confidence 34566677777777766554
No 253
>PF10112 Halogen_Hydrol: 5-bromo-4-chloroindolyl phosphate hydrolysis protein; InterPro: IPR018770 This entry consists of prokaryotic proteins that mediate the hydrolysis of 5-bromo-4-chloroindolyl phosphate bonds.
Probab=39.40 E-value=2.2e+02 Score=23.44 Aligned_cols=44 Identities=11% Similarity=0.148 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHH
Q 028133 112 NAIKEKLNSVKDTSEEVKQLEEQA-----AAVMRAARAEISAALTKMKK 155 (213)
Q Consensus 112 ~~I~~~l~eAe~~~~ea~~~~~ea-----e~~L~~Ar~ea~~Ii~~Ak~ 155 (213)
+.+++.++++++.-.+.++..... .+++.+...-++.|.+..++
T Consensus 71 ~~~~~~l~ea~~~i~~i~~~~~~i~~~~~~~~~~~~~~~~~~I~~~v~~ 119 (199)
T PF10112_consen 71 EYIREILEEAKEKIRRIEKAIKRIRDLEMIEKVSRIEKIARRIFKYVEK 119 (199)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677777765555554444322 23444444445555544443
No 254
>PF05405 Mt_ATP-synt_B: Mitochondrial ATP synthase B chain precursor (ATP-synt_B); InterPro: IPR008688 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunit B from the F0 complex in F-ATPases found in mitochondria of eukaryotes (metazoa, viridiplantae (plants and green algae), jakobidae and the malawimonadidae). The B subunits are part of the peripheral stalk that links the F1 and F0 complexes together, and which acts as a stator to prevent certain subunits from rotating with the central rotary element. The peripheral stalk differs in subunit composition between mitochondrial, chloroplast and bacterial F-ATPases. In mitochondria, the peripheral stalk is composed of one copy each of subunits OSCP (oligomycin sensitivity conferral protein), F6, B and D []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0000276 mitochondrial proton-transporting ATP synthase complex, coupling factor F(o); PDB: 2WSS_X 2CLY_D.
Probab=38.94 E-value=2e+02 Score=22.86 Aligned_cols=22 Identities=5% Similarity=0.064 Sum_probs=6.1
Q ss_pred HHHHHHhhHHHHHHHHHHHHHH
Q 028133 94 ALDKIYYSPLGNFMDERDNAIK 115 (213)
Q Consensus 94 iL~kfl~kpI~~~Ld~R~~~I~ 115 (213)
.++.-+..-+.+-.++..+...
T Consensus 33 ~~g~~i~~~ld~~~~~i~~~l~ 54 (163)
T PF05405_consen 33 KFGPSIAEWLDERIQKIEDELN 54 (163)
T ss_dssp -------CHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444443333
No 255
>PF00664 ABC_membrane: ABC transporter transmembrane region; InterPro: IPR001140 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A variety of ATP-binding transport proteins have a six transmembrane helical region. They are all integral membrane proteins involved in a variety of transport systems. Members of this family include; the cystic fibrosis transmembrane conductance regulator (CFTR), bacterial leukotoxin secretion ATP-binding protein, multidrug resistance proteins, the yeast leptomycin B resistance protein, the mammalian sulphonylurea receptor and antigen peptide transporter 2. Many of these proteins have two such regions.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3G61_B 3G5U_B 3G60_A 3B60_D 3QF4_B 2HYD_A 2ONJ_A 4A82_B 4AA3_A 2YL4_A.
Probab=38.54 E-value=2e+02 Score=22.83 Aligned_cols=33 Identities=21% Similarity=0.430 Sum_probs=16.7
Q ss_pred CCccchHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 028133 75 FDFNLTLPIIMVEFLVLMFALDKIYYSPLGNFM 107 (213)
Q Consensus 75 ~~~n~tl~~~lInFlIL~~iL~kfl~kpI~~~L 107 (213)
+-+||.+.+.++.++++++++.+++.+++.+.-
T Consensus 137 ~~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~ 169 (275)
T PF00664_consen 137 FFISWKLALILLIILPLLFLISFIFSKKIRKLS 169 (275)
T ss_dssp HHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccchhhhhhHhhhhhhcccccccc
Confidence 445665555444445555555555555444433
No 256
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=38.42 E-value=2.1e+02 Score=23.05 Aligned_cols=38 Identities=16% Similarity=0.216 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133 102 PLGNFMDERDNAIKEKLNSVKDTSEEVKQLEEQAAAVM 139 (213)
Q Consensus 102 pI~~~Ld~R~~~I~~~l~eAe~~~~ea~~~~~eae~~L 139 (213)
--.+++++|.+.+.+.+...++.-.++.+...+..+.+
T Consensus 94 eAie~l~k~~~~l~~~~~~l~~~l~~l~~~~~~l~~~~ 131 (145)
T COG1730 94 EAIEFLKKRIEELEKAIEKLQQALAELAQRIEQLEQEA 131 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777777776666655444444444333333333
No 257
>TIGR00831 a_cpa1 Na+/H+ antiporter, bacterial form. This model is specific for the bacterial members of this family.
Probab=38.25 E-value=3.7e+02 Score=25.80 Aligned_cols=13 Identities=8% Similarity=-0.251 Sum_probs=6.9
Q ss_pred HHHHhhHHHHHHH
Q 028133 96 DKIYYSPLGNFMD 108 (213)
Q Consensus 96 ~kfl~kpI~~~Ld 108 (213)
.-+-.||+.+.++
T Consensus 396 qG~tlp~l~r~l~ 408 (525)
T TIGR00831 396 QGISLPIFVKRKF 408 (525)
T ss_pred HHhhHHHHHHhcC
Confidence 3345566665554
No 258
>COG3462 Predicted membrane protein [Function unknown]
Probab=38.24 E-value=51 Score=25.46 Aligned_cols=12 Identities=25% Similarity=0.398 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHH
Q 028133 131 LEEQAAAVMRAA 142 (213)
Q Consensus 131 ~~~eae~~L~~A 142 (213)
-.+||++++++.
T Consensus 104 tEEEY~r~~~~i 115 (117)
T COG3462 104 TEEEYRRIIRTI 115 (117)
T ss_pred CHHHHHHHHHHh
Confidence 345566555543
No 259
>TIGR03785 marine_sort_HK proteobacterial dedicated sortase system histidine kinase. This histidine kinase protein is paired with an adjacent response regulator (TIGR03787) gene. It co-occurs with a variant sortase enzyme (TIGR03784), usually in the same gene neighborhood, in proteobacterial species most of which are marine, and with an LPXTG motif-containing sortase target conserved protein (TIGR03788). Sortases and LPXTG proteins are far more common in Gram-positive bacteria, where sortase systems mediate attachment to the cell wall or cross-linking of pilin structures. We give this predicted sensor histidine kinase the gene symbol psdS, for Proteobacterial Dedicated Sortase system Sensor histidine kinase.
Probab=37.64 E-value=4.2e+02 Score=26.32 Aligned_cols=15 Identities=7% Similarity=0.027 Sum_probs=8.5
Q ss_pred HHHHHHhhHHHHHHH
Q 028133 94 ALDKIYYSPLGNFMD 108 (213)
Q Consensus 94 iL~kfl~kpI~~~Ld 108 (213)
++.+.+.+||.+..+
T Consensus 425 ~~a~~i~~pI~~L~~ 439 (703)
T TIGR03785 425 GFASWISWRIRRLSD 439 (703)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344556777766433
No 260
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=36.72 E-value=1.8e+02 Score=22.53 Aligned_cols=49 Identities=14% Similarity=0.206 Sum_probs=28.1
Q ss_pred HHHhhHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133 97 KIYYSPL---GNFMDERDNAIKEKLNSVKDTSEEVKQLEEQAAAVMRAARAE 145 (213)
Q Consensus 97 kfl~kpI---~~~Ld~R~~~I~~~l~eAe~~~~ea~~~~~eae~~L~~Ar~e 145 (213)
+|+-.++ .+++++|.+.+...++..++......+..++....+.+...+
T Consensus 86 ~~vE~~~~eA~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~ 137 (140)
T PRK03947 86 YSAEKDLDEAIEILDKRKEELEKALEKLEEALQKLASRIAQLAQELQQLQQE 137 (140)
T ss_pred EEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444 456777777777766666655555555555555555554433
No 261
>COG4046 Uncharacterized protein conserved in archaea [Function unknown]
Probab=36.60 E-value=98 Score=28.36 Aligned_cols=26 Identities=12% Similarity=0.104 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133 113 AIKEKLNSVKDTSEEVKQLEEQAAAV 138 (213)
Q Consensus 113 ~I~~~l~eAe~~~~ea~~~~~eae~~ 138 (213)
.|++.+...++...++.+...++...
T Consensus 44 ~Ieg~l~~le~~~~~a~~~~~~~~~~ 69 (368)
T COG4046 44 YIEGALAELEKMENDAMKKVVELAVP 69 (368)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 46666666666666665555554443
No 262
>PF04341 DUF485: Protein of unknown function, DUF485; InterPro: IPR007436 This family includes several putative integral membrane proteins.
Probab=36.53 E-value=1.1e+02 Score=22.26 Aligned_cols=43 Identities=12% Similarity=0.096 Sum_probs=18.6
Q ss_pred cccC-C-ccchHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 028133 72 AALF-D-FNLTLPIIMVEFLVLMFALDKIYYSPLGNFMDERDNAIK 115 (213)
Q Consensus 72 g~l~-~-~n~tl~~~lInFlIL~~iL~kfl~kpI~~~Ld~R~~~I~ 115 (213)
.+++ + +++.++.-+..|++.+.+.+.|+ ..-++.+|...+++.
T Consensus 45 ~~v~~G~~t~g~~~g~~~~~~~~~l~~~Yv-~~An~~~D~l~~~i~ 89 (91)
T PF04341_consen 45 TPVFPGSLTLGIVLGLGQIVFAWVLTWLYV-RRANREFDPLARAIR 89 (91)
T ss_pred CcccCCCcCHHHHHHHHHHHHHHHHHHHHH-HHHccccCHHHHHHH
Confidence 4455 4 55555544444433333333322 223333555555443
No 263
>COG4575 ElaB Uncharacterized conserved protein [Function unknown]
Probab=36.29 E-value=1.9e+02 Score=22.00 Aligned_cols=18 Identities=17% Similarity=0.333 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 028133 124 TSEEVKQLEEQAAAVMRA 141 (213)
Q Consensus 124 ~~~ea~~~~~eae~~L~~ 141 (213)
...+++.+....++.|..
T Consensus 13 l~~el~~L~d~lEevL~s 30 (104)
T COG4575 13 LLAELQELLDTLEEVLKS 30 (104)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 333444444444444443
No 264
>PF08776 VASP_tetra: VASP tetramerisation domain; InterPro: IPR014885 Vasodilator-stimulated phosphoprotein (VASP) is an actin cytoskeletal regulatory protein. This region corresponds to the tetramerisation domain which forms a right handed alpha helical coiled coil structure []. ; PDB: 1USE_A 1USD_A.
Probab=36.21 E-value=1.1e+02 Score=19.26 Aligned_cols=31 Identities=13% Similarity=0.156 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133 157 TQLEVEQKLAVGRKKIEAELQEALANLERQK 187 (213)
Q Consensus 157 Ae~e~e~il~~Ak~e~e~~~~~A~~~I~~e~ 187 (213)
-+..+++++.+.++|+++.+..-...+.++.
T Consensus 5 le~~KqEIL~EvrkEl~K~K~EIIeA~~~eL 35 (40)
T PF08776_consen 5 LERLKQEILEEVRKELQKVKEEIIEAIRQEL 35 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666665555554444443
No 265
>COG0330 HflC Membrane protease subunits, stomatin/prohibitin homologs [Posttranslational modification, protein turnover, chaperones]
Probab=35.85 E-value=2.3e+02 Score=24.53 Aligned_cols=33 Identities=24% Similarity=0.259 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133 138 VMRAARAEISAALTKMKKETQLEVEQKLAVGRKKI 172 (213)
Q Consensus 138 ~L~~Ar~ea~~Ii~~Ak~eAe~e~e~il~~Ak~e~ 172 (213)
.+.+|+.+.++.+ .+.+++.+...++++|..+.
T Consensus 192 ~i~~Ae~~~~~~~--~~a~g~~~a~~i~aea~~~a 224 (291)
T COG0330 192 EILEAEGEAQAAI--LRAEGEAEAAIILAEAEAEA 224 (291)
T ss_pred HHHHhHhHHhhhh--hhhhhhHHHHHHHHHHHHHH
Confidence 3344444443333 23444444555555555544
No 266
>PF02699 YajC: Preprotein translocase subunit; InterPro: IPR003849 Secretion across the inner membrane in some Gram-negative bacteria occurs via the preprotein translocase pathway. Proteins are produced in the cytoplasm as precursors, and require a chaperone subunit to direct them to the translocase component []. From there, the mature proteins are either targeted to the outer membrane, or remain as periplasmic proteins []. The translocase protein subunits are encoded on the bacterial chromosome. The translocase itself comprises 7 proteins, including a chaperone (SecB), ATPase (SecA), an integral membrane complex (SecY, SecE and SecG), and two additional membrane proteins that promote the release of the mature peptide into the periplasm (SecD and SecF) []. Other cytoplasmic/periplasmic proteins play a part in preprotein translocase activity, namely YidC and YajC []. The latter is bound in a complex to SecD and SecF, and plays a part in stabilising and regulating secretion through the SecYEG integral membrane component via SecA []. Homologues of the YajC gene have been found in a range of pathogenic and commensal microbes. Brucella abortis YajC- and SecD-like proteins were shown to stimulate a Th1 cell-mediated immune response in mice, and conferred protection when challenged with B.abortis []. Therefore, these proteins may have an antigenic role as well as a secretory one in virulent bacteria []. A number of previously uncharacterised "hypothetical" proteins also show similarity to E.coli YajC, suggesting that this family is wider than first thought []. More recently, the precise interactions between the E.coli SecYEG complex, SecD, SecF, YajC and YidC have been studied []. Rather than acting individually, the four proteins form a heterotetrameric complex and associate with the SecYEG heterotrimeric complex []. The SecF and YajC subunits link the complex to the integral membrane translocase. ; PDB: 2RDD_B.
Probab=35.77 E-value=45 Score=23.92 Aligned_cols=23 Identities=4% Similarity=0.196 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHH
Q 028133 86 VEFLVLMFALDKIYYSPLGNFMD 108 (213)
Q Consensus 86 InFlIL~~iL~kfl~kpI~~~Ld 108 (213)
+-|++++.+++.+.+.|-.+--+
T Consensus 6 i~lv~~~~i~yf~~~rpqkk~~k 28 (82)
T PF02699_consen 6 IPLVIIFVIFYFLMIRPQKKQQK 28 (82)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHhhheecHHHHHHH
Confidence 33334444444455666654333
No 267
>TIGR02832 spo_yunB sporulation protein YunB. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. Mutation of this sigma E-regulated gene, designated yunB, has been shown to cause a sporulation defect.
Probab=35.73 E-value=82 Score=26.74 Aligned_cols=37 Identities=16% Similarity=0.281 Sum_probs=27.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 028133 80 TLPIIMVEFLVLMFALDKIYYSPLGNFMDERDNAIKE 116 (213)
Q Consensus 80 tl~~~lInFlIL~~iL~kfl~kpI~~~Ld~R~~~I~~ 116 (213)
.++++++.++.++|++.+.+.|.+.++-+.+-+.+..
T Consensus 10 ~~i~~~~~~~~~~~~~~~~i~P~l~~iAe~~a~~~at 46 (204)
T TIGR02832 10 SLILFILLLLQFLWIVDSLIKPTLLAVAEVEMNRIAT 46 (204)
T ss_pred HHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHH
Confidence 3445666777778888888888888888777776654
No 268
>PRK14161 heat shock protein GrpE; Provisional
Probab=35.65 E-value=2.6e+02 Score=23.19 Aligned_cols=23 Identities=13% Similarity=0.108 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 028133 161 VEQKLAVGRKKIEAELQEALANL 183 (213)
Q Consensus 161 ~e~il~~Ak~e~e~~~~~A~~~I 183 (213)
.++.+...+++.+..+..+...+
T Consensus 49 feN~rkR~~ke~~~~~~~a~~~~ 71 (178)
T PRK14161 49 IDNTRKRLEKARDEAKDYAIATF 71 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333
No 269
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=35.63 E-value=2.8e+02 Score=23.64 Aligned_cols=7 Identities=0% Similarity=0.406 Sum_probs=2.6
Q ss_pred HHHHHHH
Q 028133 102 PLGNFMD 108 (213)
Q Consensus 102 pI~~~Ld 108 (213)
.+.+.++
T Consensus 42 ~i~~~l~ 48 (302)
T PF10186_consen 42 RIEEILE 48 (302)
T ss_pred HHHHHHH
Confidence 3333333
No 270
>COG5085 Predicted membrane protein [Function unknown]
Probab=35.60 E-value=1.8e+02 Score=25.09 Aligned_cols=43 Identities=16% Similarity=0.307 Sum_probs=24.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHh---hHHHHHHHHHHHHHHHHHHHHH
Q 028133 80 TLPIIMVEFLVLMFALDKIYY---SPLGNFMDERDNAIKEKLNSVK 122 (213)
Q Consensus 80 tl~~~lInFlIL~~iL~kfl~---kpI~~~Ld~R~~~I~~~l~eAe 122 (213)
++|...|.-.|+++++.+|++ +-|+.-++.|+..++.++.+.+
T Consensus 87 QLflNaiv~~iilyf~~kfi~glQnDv~~k~e~rk~e~q~q~a~ck 132 (230)
T COG5085 87 QLFLNAIVIGIILYFVVKFIVGLQNDVGYKMESRKAEIQHQIAECK 132 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344433333334444444443 3466778888888777776665
No 271
>KOG4503 consensus Uncharacterized conserved membrane protein [Function unknown]
Probab=35.60 E-value=1.8e+02 Score=25.09 Aligned_cols=43 Identities=16% Similarity=0.307 Sum_probs=24.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHh---hHHHHHHHHHHHHHHHHHHHHH
Q 028133 80 TLPIIMVEFLVLMFALDKIYY---SPLGNFMDERDNAIKEKLNSVK 122 (213)
Q Consensus 80 tl~~~lInFlIL~~iL~kfl~---kpI~~~Ld~R~~~I~~~l~eAe 122 (213)
++|...|.-.|+++++.+|++ +-|+.-++.|+..++.++.+.+
T Consensus 87 QLflNaiv~~iilyf~~kfi~glQnDv~~k~e~rk~e~q~q~a~ck 132 (230)
T KOG4503|consen 87 QLFLNAIVIGIILYFVVKFIVGLQNDVGYKMESRKAEIQHQIAECK 132 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344433333334444444443 3466778888888777776665
No 272
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=35.34 E-value=2.1e+02 Score=22.15 Aligned_cols=76 Identities=9% Similarity=0.140 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133 82 PIIMVEFLVLMFALDKIYYSPLGNFMDERDNAIKEKLNSVKDTSEEVKQLEEQAAAVMRAARAEISAALTKMKKETQL 159 (213)
Q Consensus 82 ~~~lInFlIL~~iL~kfl~kpI~~~Ld~R~~~I~~~l~eAe~~~~ea~~~~~eae~~L~~Ar~ea~~Ii~~Ak~eAe~ 159 (213)
++++|.|+|-+++ .++..+...+. .+=++.+++...+-++++.++.+=-......+.+....-+++.+..-..++.
T Consensus 4 i~lvvG~iiG~~~-~r~~~~~~~~q-~~l~~eL~~~k~el~~yk~~V~~HF~~ta~Ll~~l~~~Y~~l~~Hla~~a~~ 79 (128)
T PF06295_consen 4 IGLVVGLIIGFLI-GRLTSSNQQKQ-AKLEQELEQAKQELEQYKQEVNDHFAQTAELLDNLTQDYQKLYQHLAKGAEE 79 (128)
T ss_pred HHHHHHHHHHHHH-HHHhccchhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555444433 44444443221 1112222223333335555555555555555555555555555555554444
No 273
>PF07332 DUF1469: Protein of unknown function (DUF1469); InterPro: IPR009937 This entry represents proteins found in hypothetical bacterial proteins where is is annotated as ycf49 or ycf49-like. The function is not known.
Probab=35.32 E-value=1.8e+02 Score=21.62 Aligned_cols=37 Identities=24% Similarity=0.229 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHhhHHH---HHHHHHHHHHHHHHH
Q 028133 83 IIMVEFLVLMFALDKIYYSPLG---NFMDERDNAIKEKLN 119 (213)
Q Consensus 83 ~~lInFlIL~~iL~kfl~kpI~---~~Ld~R~~~I~~~l~ 119 (213)
+....|+++.+++..+.++.+. ..+++=.+.++++.+
T Consensus 77 iv~~~~l~la~i~~~~~~~~l~~~~~~~~~t~~~l~~d~~ 116 (121)
T PF07332_consen 77 IVAGLYLLLALILLLIGRRRLRRAPPPFEETIAELKEDIA 116 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 3444555555555666666664 344444444444443
No 274
>PF14163 SieB: Superinfection exclusion protein B
Probab=35.28 E-value=1.9e+02 Score=22.76 Aligned_cols=16 Identities=31% Similarity=0.326 Sum_probs=9.9
Q ss_pred HHHHHHhhcCchhhhh
Q 028133 52 AVAVTSLAFSPPSLAA 67 (213)
Q Consensus 52 ~~~~~~~~~~~~a~A~ 67 (213)
.+.+..++++|....+
T Consensus 6 ~i~~~~llf~P~~~~~ 21 (151)
T PF14163_consen 6 IIFSGLLLFLPESLLE 21 (151)
T ss_pred HHHHHHHHHCCHHHHH
Confidence 4455556677777664
No 275
>COG0598 CorA Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism]
Probab=35.17 E-value=68 Score=28.62 Aligned_cols=17 Identities=29% Similarity=0.577 Sum_probs=11.9
Q ss_pred HHHHHHhhcCchhhhhh
Q 028133 52 AVAVTSLAFSPPSLAAE 68 (213)
Q Consensus 52 ~~~~~~~~~~~~a~A~e 68 (213)
...+.+++|+||.+=++
T Consensus 264 ~LTi~s~iflPpTlIag 280 (322)
T COG0598 264 ILTIVSTIFLPPTLITG 280 (322)
T ss_pred HHHHHHHHHHhhHHHHc
Confidence 34566778899998643
No 276
>PF05933 Fun_ATP-synt_8: Fungal ATP synthase protein 8 (A6L); InterPro: IPR009230 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunit 8 found in the F0 complex of mitochondrial F-ATPases from fungi. This subunit appears to be an integral component of the stator stalk in yeast mitochondrial F-ATPases []. The stator stalk is anchored in the membrane, and acts to prevent futile rotation of the ATPase subunits relative to the rotor during coupled ATP synthesis/hydrolysis. This subunit differs in sequence between fungi, Metazoa (IPR001421 from INTERPRO) and plants (IPR003319 from INTERPRO). More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0000276 mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)
Probab=35.12 E-value=1.3e+02 Score=19.71 Aligned_cols=31 Identities=13% Similarity=0.253 Sum_probs=23.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 028133 80 TLPIIMVEFLVLMFALDKIYYSPLGNFMDER 110 (213)
Q Consensus 80 tl~~~lInFlIL~~iL~kfl~kpI~~~Ld~R 110 (213)
.+.+..+.+.+++|+..+++.|.+.+..-.|
T Consensus 12 ql~~~f~~l~il~yl~SkyiLP~~lrl~~sR 42 (48)
T PF05933_consen 12 QLSFGFLILSILLYLFSKYILPRILRLFVSR 42 (48)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445677888888888999999887766555
No 277
>PF14899 DUF4492: Domain of unknown function (DUF4492)
Probab=34.43 E-value=91 Score=21.71 Aligned_cols=24 Identities=13% Similarity=0.436 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHH
Q 028133 84 IMVEFLVLMFALDKIYYSPLGNFM 107 (213)
Q Consensus 84 ~lInFlIL~~iL~kfl~kpI~~~L 107 (213)
.+|=.+|++++|+-|++|...+..
T Consensus 25 IliKLfImF~vLK~FfFp~~l~~~ 48 (64)
T PF14899_consen 25 ILIKLFIMFAVLKLFFFPNFLNTK 48 (64)
T ss_pred HHHHHHHHHHHHHHHHCcchhccC
Confidence 456777888888999999887655
No 278
>PRK11677 hypothetical protein; Provisional
Probab=34.31 E-value=2.4e+02 Score=22.39 Aligned_cols=42 Identities=10% Similarity=0.128 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133 119 NSVKDTSEEVKQLEEQAAAVMRAARAEISAALTKMKKETQLE 160 (213)
Q Consensus 119 ~eAe~~~~ea~~~~~eae~~L~~Ar~ea~~Ii~~Ak~eAe~e 160 (213)
.+-+++++++.+=-.+....+......-+++.+-.-+.+...
T Consensus 43 ~ele~YkqeV~~HFa~TA~Ll~~L~~~Y~~Ly~HlA~~s~~L 84 (134)
T PRK11677 43 AELEEYRQELVSHFARSAELLDTMAKDYRQLYQHMAKSSSEL 84 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334456666666666666666666666666655554444433
No 279
>COG4280 Predicted membrane protein [Function unknown]
Probab=33.98 E-value=94 Score=26.71 Aligned_cols=61 Identities=16% Similarity=0.054 Sum_probs=41.8
Q ss_pred HHhhcCchhhhhhhhhcccCCccchHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 028133 56 TSLAFSPPSLAAEIEKAALFDFNLTLPIIMVEFLVLMFALDKIYYSPLGNFMDERDNAIKEKLNS 120 (213)
Q Consensus 56 ~~~~~~~~a~A~e~~~g~l~~~n~tl~~~lInFlIL~~iL~kfl~kpI~~~Ld~R~~~I~~~l~e 120 (213)
...+++.+++. -|++..+-+--+.+++.=++|++|-+++.-+-+..+-..|+...+++++|
T Consensus 43 glalvl~l~lv----lGk~L~lvPln~lqiv~gvLLllFG~rw~Rsavrr~ag~rkg~~ee~leE 103 (236)
T COG4280 43 GLALVLILTLV----LGKLLYLVPLNYLQIVSGVLLLLFGYRWIRSAVRRFAGIRKGGGEEKLEE 103 (236)
T ss_pred HHHHHHHHHHH----HccceeeeechHHHHHHHHHHHHHHHHHHHHHHHHHhchhccCchhhHhh
Confidence 33444555565 25555544444567777778888889999998988888888888777653
No 280
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=33.86 E-value=2.6e+02 Score=22.72 Aligned_cols=79 Identities=20% Similarity=0.236 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133 111 DNAIKEKLNSVKDTSEEVKQLEEQAAAVMRAARAEISAALTKMKKETQL---EVEQKLAVGRKKIEAELQEALANLERQK 187 (213)
Q Consensus 111 ~~~I~~~l~eAe~~~~ea~~~~~eae~~L~~Ar~ea~~Ii~~Ak~eAe~---e~e~il~~Ak~e~e~~~~~A~~~I~~e~ 187 (213)
+..+..--.+.+..+.+.+.+..+.+..+...+.+.+--++.-+.+... ..+..+.+.+.+++..+...+.+|+.-+
T Consensus 72 k~~~~~lr~~~e~L~~eie~l~~~L~~ei~~l~a~~klD~n~eK~~~r~e~~~~~~ki~e~~~ki~~ei~~lr~~iE~~K 151 (177)
T PF07798_consen 72 KSEFAELRSENEKLQREIEKLRQELREEINKLRAEVKLDLNLEKGRIREEQAKQELKIQELNNKIDTEIANLRTEIESLK 151 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334344444456666666666666666666666555444322222211 1222244555555555555444444443
Q ss_pred HH
Q 028133 188 ED 189 (213)
Q Consensus 188 ~~ 189 (213)
-+
T Consensus 152 ~~ 153 (177)
T PF07798_consen 152 WD 153 (177)
T ss_pred HH
Confidence 33
No 281
>KOG4478 consensus Uncharacterized membrane protein [Function unknown]
Probab=33.71 E-value=51 Score=28.04 Aligned_cols=21 Identities=33% Similarity=0.373 Sum_probs=13.3
Q ss_pred hhhhhhhhhhhhhhHHHHHHhhcCc
Q 028133 38 KLLKLSSSALKSLSAVAVTSLAFSP 62 (213)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~ 62 (213)
+++|||++-+ ..++.-+++-.
T Consensus 78 K~lSlSTsl~----gv~~~Pvi~~q 98 (217)
T KOG4478|consen 78 KILSLSTSLA----GVVMVPVLSSQ 98 (217)
T ss_pred EEEEehhhhh----hhhhhhhHhhh
Confidence 8899988766 44444444443
No 282
>KOG2629 consensus Peroxisomal membrane anchor protein (peroxin) [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=33.30 E-value=3.7e+02 Score=24.29 Aligned_cols=32 Identities=16% Similarity=0.191 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHH-HHHHHHHH
Q 028133 81 LPIIMVEFLVLMFALDKIYYSPLG-NFMDERDN 112 (213)
Q Consensus 81 l~~~lInFlIL~~iL~kfl~kpI~-~~Ld~R~~ 112 (213)
+|+..+.|.-+.|-++.|+.+-|. .++.++++
T Consensus 86 y~vmAvi~aGi~y~~y~~~K~YV~P~~l~~~~~ 118 (300)
T KOG2629|consen 86 YFVMAVILAGIAYAAYRFVKSYVLPRFLGESKD 118 (300)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHhhCccch
Confidence 455555555566655665555443 35566665
No 283
>PHA01547 putative internal virion protein A
Probab=33.02 E-value=2.9e+02 Score=23.06 Aligned_cols=48 Identities=19% Similarity=0.291 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 028133 165 LAVGRKKIEAELQEALANLERQKEDTIKSLDSQIAALSEEIVRKVLPV 212 (213)
Q Consensus 165 l~~Ak~e~e~~~~~A~~~I~~e~~~a~~eL~~ei~~lA~~ia~KiL~~ 212 (213)
++..-.+||++..++.-++++....-.-.|..++.++-...-.-+|+.
T Consensus 96 VDAv~~DIdRE~gEa~v~~~q~l~aq~ynl~n~irsi~~~a~aglLGQ 143 (206)
T PHA01547 96 VDAVALDIDREVGEALVQIDQNLDAQMYNLANQIRSIQAQAKAGLLGQ 143 (206)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhhhcc
Confidence 445556888999999999998888888888888888877776666653
No 284
>PRK10297 PTS system N,N'-diacetylchitobiose-specific transporter subunit IIC; Provisional
Probab=32.89 E-value=1.5e+02 Score=28.14 Aligned_cols=32 Identities=16% Similarity=0.342 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 028133 86 VEFLVLMFALDKIYYSPLGNFMDERDNAIKEK 117 (213)
Q Consensus 86 InFlIL~~iL~kfl~kpI~~~Ld~R~~~I~~~ 117 (213)
+.+-++.+++.-.+|-|.-+..|+....++++
T Consensus 409 ~ilq~v~lvi~~lIY~PFvK~~dk~~~~~~~~ 440 (452)
T PRK10297 409 LLVALFNLGIATLIYLPFVVVANKAQNAIDKE 440 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44445556666777888888888888777554
No 285
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=32.52 E-value=3.8e+02 Score=24.29 Aligned_cols=15 Identities=7% Similarity=0.388 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHH
Q 028133 104 GNFMDERDNAIKEKL 118 (213)
Q Consensus 104 ~~~Ld~R~~~I~~~l 118 (213)
.++|+++++-|=+-.
T Consensus 96 NdYLE~vEdii~nL~ 110 (309)
T TIGR00570 96 NDYLEEVEDIVYNLT 110 (309)
T ss_pred HHHHHHHHHHHHHhh
Confidence 345555555554433
No 286
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=32.50 E-value=4.5e+02 Score=25.04 Aligned_cols=86 Identities=23% Similarity=0.338 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHH
Q 028133 125 SEEVKQLEEQAAAVMRAARAEISAALTKMKKETQLEVEQKLAVGRKKIEAELQEAL------ANLERQKEDTIKSLDSQI 198 (213)
Q Consensus 125 ~~ea~~~~~eae~~L~~Ar~ea~~Ii~~Ak~eAe~e~e~il~~Ak~e~e~~~~~A~------~~I~~e~~~a~~eL~~ei 198 (213)
....+.++.+.+..|...+.+.+.++.+-....-.-.+.+.+.-+++.++++.+.+ ..++++-..-...++.++
T Consensus 351 QkkiEdLQRqHqRELekLreEKdrLLAEETAATiSAIEAMKnAhrEEmeRELeKsqSvnsdveaLRrQyleelqsvqREL 430 (593)
T KOG4807|consen 351 QKKIEDLQRQHQRELEKLREEKDRLLAEETAATISAIEAMKNAHREEMERELEKSQSVNSDVEALRRQYLEELQSVQREL 430 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhccccChHHHHHHHHHHHHHHHHHH
Confidence 44567777778888888888888877766555555566666677777777776654 234444444455566666
Q ss_pred HHHHHHHHHhhc
Q 028133 199 AALSEEIVRKVL 210 (213)
Q Consensus 199 ~~lA~~ia~KiL 210 (213)
.-|+.+...|-|
T Consensus 431 eVLSEQYSQKCL 442 (593)
T KOG4807|consen 431 EVLSEQYSQKCL 442 (593)
T ss_pred HHHHHHHHHHHH
Confidence 667766666544
No 287
>PRK10549 signal transduction histidine-protein kinase BaeS; Provisional
Probab=32.28 E-value=3.8e+02 Score=24.14 Aligned_cols=20 Identities=15% Similarity=0.383 Sum_probs=11.8
Q ss_pred HHHHHHHHHHhhHHHHHHHH
Q 028133 90 VLMFALDKIYYSPLGNFMDE 109 (213)
Q Consensus 90 IL~~iL~kfl~kpI~~~Ld~ 109 (213)
++.|++.+.+.+|+....+.
T Consensus 179 ~~~~~~~r~i~~pl~~l~~~ 198 (466)
T PRK10549 179 LATFLLARGLLAPVKRLVEG 198 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34445556677888765443
No 288
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=32.12 E-value=4.5e+02 Score=24.92 Aligned_cols=33 Identities=18% Similarity=0.241 Sum_probs=15.7
Q ss_pred CCccchHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 028133 75 FDFNLTLPIIMVEFLVLMFALDKIYYSPLGNFM 107 (213)
Q Consensus 75 ~~~n~tl~~~lInFlIL~~iL~kfl~kpI~~~L 107 (213)
+-+||.+.+.++.++++++++.+++.+++.+..
T Consensus 150 ~~~~~~l~~i~l~~~~l~~~~~~~~~~~~~~~~ 182 (571)
T TIGR02203 150 LYYSWQLTLIVVVMLPVLSILMRRVSKRLRRIS 182 (571)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555444444444444444455555554443
No 289
>PF01093 Clusterin: Clusterin; InterPro: IPR000753 Clusterin is a vertebrate glycoprotein [], the exact function of which is not yet clear. Clusterin expression is complex, appearing as different forms in different cell compartments. One set of proteins is directed for secretion, and other clusterin species are expressed in the cytoplasm and nucleus. The secretory form of the clusterin protein (sCLU) is targeted to the ER by an initial leader peptide. This ~60kDa pre-sCLU protein is further glycosylated and proteolytically cleaved into alpha- and beta-subunits, held together by disulphide bonds. External sCLU is an 80kDa protein and may act as a molecular chaperone, scavenging denatured proteins outside cells following specific stress-induced injury such as heat shock. sCLU possesses nonspecific binding activity to hydrophobic domains of various proteins in vitro []. A specific nuclear form of CLU (nCLU) acts as a pro-death signal, inhibiting cell growth and survival. The nCLU protein has two coiled-coil domains, one at its N terminus that is unable to bind Ku70, and a C-terminal coiled-coil domain that is uniquely able to associate with Ku70 and is minimally required for cell death. Clusterin is synthesized as a precursor polypeptide of about 400 amino acids which is post-translationally cleaved to form two subunits of about 200 amino acids each. The two subunits are linked by five disulphide bonds to form an antiparallel ladder-like structure []. In each of the mature subunits the five cysteines that are involved in disulphide bonds are clustered in domains of about 30 amino acids located in the central part of the subunits. This entry represents the clusterin precursor and related proteins.; GO: 0008219 cell death
Probab=31.87 E-value=3.1e+02 Score=26.09 Aligned_cols=53 Identities=13% Similarity=0.255 Sum_probs=38.9
Q ss_pred hhHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133 100 YSPLGNFMDERDNAIK---EKLNSVKDTSEEVKQLEEQAAAVMRAARAEISAALTK 152 (213)
Q Consensus 100 ~kpI~~~Ld~R~~~I~---~~l~eAe~~~~ea~~~~~eae~~L~~Ar~ea~~Ii~~ 152 (213)
.|-++.+|++|++..+ +.|+.+++.+++|-++-.+.+.+|+++..-.+.-+..
T Consensus 25 vKqMK~~Mek~eeeh~~Lm~tL~k~kk~KeeAl~l~~e~e~kLee~e~~Cn~sm~~ 80 (436)
T PF01093_consen 25 VKQMKTMMEKTEEEHKELMKTLEKSKKEKEEALKLANEVEEKLEEEEEVCNESMMA 80 (436)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667778888877755 4566777778888888888888888887776655443
No 290
>PF11119 DUF2633: Protein of unknown function (DUF2633); InterPro: IPR022576 This family is conserved largely in Proteobacteria. Several members are named as YfgG. The function is not known.
Probab=31.42 E-value=1.6e+02 Score=20.21 Aligned_cols=19 Identities=21% Similarity=0.410 Sum_probs=12.8
Q ss_pred chHHHHHHHHHHHHHHHHH
Q 028133 79 LTLPIIMVEFLVLMFALDK 97 (213)
Q Consensus 79 ~tl~~~lInFlIL~~iL~k 97 (213)
.|-++.+|+|+||+.-|-+
T Consensus 9 mtriVLLISfiIlfgRl~Y 27 (59)
T PF11119_consen 9 MTRIVLLISFIILFGRLIY 27 (59)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4556678888888774333
No 291
>COG4575 ElaB Uncharacterized conserved protein [Function unknown]
Probab=31.25 E-value=2.4e+02 Score=21.52 Aligned_cols=35 Identities=9% Similarity=0.081 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133 136 AAVMRAARAEISAALTKMKKETQLEVEQKLAVGRK 170 (213)
Q Consensus 136 e~~L~~Ar~ea~~Ii~~Ak~eAe~e~e~il~~Ak~ 170 (213)
..+..++|.+++..+.+++.............++.
T Consensus 36 ~~e~~~lR~r~~~~Lk~~r~rl~~~~d~v~~~sk~ 70 (104)
T COG4575 36 GDEAEELRSKAESALKEARDRLGDTGDAVVQRSKA 70 (104)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 33444445555555555554444444444444333
No 292
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=30.87 E-value=3.2e+02 Score=22.92 Aligned_cols=49 Identities=12% Similarity=0.108 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133 106 FMDERDNAIKEKLNSVKDTSEEVKQLEEQAAAVMRAARAEISAALTKMK 154 (213)
Q Consensus 106 ~Ld~R~~~I~~~l~eAe~~~~ea~~~~~eae~~L~~Ar~ea~~Ii~~Ak 154 (213)
+|+.=...+++++.+++.....+-......+..+.+.+..+.+.-+.|+
T Consensus 28 ~l~q~irem~~~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~~~~~~~A~ 76 (219)
T TIGR02977 28 MIRLIIQEMEDTLVEVRTTSARTIADKKELERRVSRLEAQVADWQEKAE 76 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555555554444444444445555555555444444443
No 293
>PHA00276 phage lambda Rz-like lysis protein
Probab=30.61 E-value=2.9e+02 Score=22.29 Aligned_cols=90 Identities=14% Similarity=0.248 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHH
Q 028133 112 NAIKEKLNSVKDTSEEVKQLEEQAAAVMRAARAEISAALTKMKKETQLEVEQKL-------------AVGRKKIEAELQE 178 (213)
Q Consensus 112 ~~I~~~l~eAe~~~~ea~~~~~eae~~L~~Ar~ea~~Ii~~Ak~eAe~e~e~il-------------~~Ak~e~e~~~~~ 178 (213)
.+-.......+..++.+..+..+|...+.+++.+.+.++.+.+.-.....-... -.++.|++-.-..
T Consensus 38 ~e~~~~~~a~~~~QqaVaal~~~yqkEladaK~~~DrLiadlRsGn~RLqvr~~a~s~~~~s~gg~~~~gRAeLd~~~A~ 117 (144)
T PHA00276 38 NEYVKKVEATADTQAAINAVSKEYQEDLAALEGSTDRVIADLRSDNKRLRVRLKPTSGEVQSDGRCLPDGRAELDERDAK 117 (144)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHcCCceEEeeeecccccccCCCCCCCCcceeeCHHHHH
Confidence 333334444555678888999999999999999999999887765443332221 2244555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 028133 179 ALANLERQKEDTIKSLDSQIAAL 201 (213)
Q Consensus 179 A~~~I~~e~~~a~~eL~~ei~~l 201 (213)
....|-.+-+...+.|+..+..+
T Consensus 118 rii~i~~~gD~~iralq~~vr~l 140 (144)
T PHA00276 118 RLIGITQRGDAWIKALQDTIREL 140 (144)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555566666655544
No 294
>COG2857 CYT1 Cytochrome c1 [Energy production and conversion]
Probab=30.59 E-value=35 Score=29.71 Aligned_cols=24 Identities=33% Similarity=0.625 Sum_probs=19.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhHH
Q 028133 80 TLPIIMVEFLVLMFALDKIYYSPL 103 (213)
Q Consensus 80 tl~~~lInFlIL~~iL~kfl~kpI 103 (213)
.++++++.|.+|+++++|.+|+.+
T Consensus 226 ~v~~fl~~~~~l~~~~k~~~w~~~ 249 (250)
T COG2857 226 KVMIFLVVFTILAYLLKKEYWSDV 249 (250)
T ss_pred eehhHHHHHHHHHHHHHHHHhhcC
Confidence 456677799999999999999754
No 295
>PRK09510 tolA cell envelope integrity inner membrane protein TolA; Provisional
Probab=30.40 E-value=4.6e+02 Score=24.54 Aligned_cols=14 Identities=14% Similarity=0.539 Sum_probs=5.9
Q ss_pred hHHHHHHHHHHHHH
Q 028133 80 TLPIIMVEFLVLMF 93 (213)
Q Consensus 80 tl~~~lInFlIL~~ 93 (213)
.+++.++.|++|+|
T Consensus 18 Sv~LHvlLi~lLi~ 31 (387)
T PRK09510 18 SVVLHIILFALLIW 31 (387)
T ss_pred HHHHHHHHHHHHHH
Confidence 33344444444443
No 296
>KOG1664 consensus Vacuolar H+-ATPase V1 sector, subunit E [Energy production and conversion]
Probab=30.08 E-value=3.6e+02 Score=23.19 Aligned_cols=49 Identities=20% Similarity=0.151 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133 139 MRAARAEISAALTKMKKETQLEVEQKLAVGRKKIEAELQEALANLERQK 187 (213)
Q Consensus 139 L~~Ar~ea~~Ii~~Ak~eAe~e~e~il~~Ak~e~e~~~~~A~~~I~~e~ 187 (213)
-.+|.+++.+|-..|.++-+-|..+++.+-+..++.-...-..+++.++
T Consensus 18 ~qEA~EKA~EI~~kAeeEfnIEK~rlV~~q~~kI~~~yekKeKqve~~k 66 (220)
T KOG1664|consen 18 RQEAEEKAKEIDAKAEEEFNIEKGRLVQEQRLKIMQYYEKKEKQVELQK 66 (220)
T ss_pred HHHHHHHHHHhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555555555555544444444444333
No 297
>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway.
Probab=29.86 E-value=52 Score=23.86 Aligned_cols=19 Identities=21% Similarity=0.464 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHhhH
Q 028133 84 IMVEFLVLMFALDKIYYSP 102 (213)
Q Consensus 84 ~lInFlIL~~iL~kfl~kp 102 (213)
....|++|+.++.+++|+.
T Consensus 73 i~~~~~~f~~~v~yI~~rR 91 (92)
T PF03908_consen 73 IFFAFLFFLLVVLYILWRR 91 (92)
T ss_pred HHHHHHHHHHHHHHHhhhc
Confidence 3456666666666777764
No 298
>PF12037 DUF3523: Domain of unknown function (DUF3523); InterPro: IPR021911 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 257 to 277 amino acids in length. This domain is found associated with PF00004 from PFAM. This domain has a conserved LER sequence motif.
Probab=29.80 E-value=4.1e+02 Score=23.74 Aligned_cols=18 Identities=22% Similarity=0.292 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 028133 154 KKETQLEVEQKLAVGRKK 171 (213)
Q Consensus 154 k~eAe~e~e~il~~Ak~e 171 (213)
+.+++-+.+.++..+..+
T Consensus 165 ~~eaeL~~e~~~~k~~AE 182 (276)
T PF12037_consen 165 EEEAELRRETERAKAEAE 182 (276)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444333333333
No 299
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=29.65 E-value=5.2e+02 Score=24.89 Aligned_cols=21 Identities=24% Similarity=0.270 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 028133 183 LERQKEDTIKSLDSQIAALSE 203 (213)
Q Consensus 183 I~~e~~~a~~eL~~ei~~lA~ 203 (213)
....++.-+.+|+.|+.++-+
T Consensus 429 ~~~s~d~~I~dLqEQlrDlmf 449 (493)
T KOG0804|consen 429 ALGSKDEKITDLQEQLRDLMF 449 (493)
T ss_pred HHHHHHHHHHHHHHHHHhHhe
Confidence 334445556667777766644
No 300
>PF07946 DUF1682: Protein of unknown function (DUF1682); InterPro: IPR012879 The members of this family are all hypothetical eukaryotic proteins of unknown function. One member (Q920S6 from SWISSPROT) is described as being an adipocyte-specific protein, but no evidence of this was found.
Probab=29.52 E-value=4.1e+02 Score=23.75 Aligned_cols=26 Identities=15% Similarity=0.236 Sum_probs=10.7
Q ss_pred HHHhhH--HHHHHHHHHHHHHHHHHHHH
Q 028133 97 KIYYSP--LGNFMDERDNAIKEKLNSVK 122 (213)
Q Consensus 97 kfl~kp--I~~~Ld~R~~~I~~~l~eAe 122 (213)
++-++| ..+.-..|++.+++-...++
T Consensus 249 ~~~l~~e~~~K~~k~R~~~~~~~~K~~~ 276 (321)
T PF07946_consen 249 RFKLSPEAKKKAKKNREEEEEKILKEAH 276 (321)
T ss_pred eeeeCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444 23444444444444333333
No 301
>PTZ00186 heat shock 70 kDa precursor protein; Provisional
Probab=29.47 E-value=5.5e+02 Score=25.55 Aligned_cols=6 Identities=33% Similarity=0.645 Sum_probs=2.8
Q ss_pred Cchhhh
Q 028133 61 SPPSLA 66 (213)
Q Consensus 61 ~~~a~A 66 (213)
.||+..
T Consensus 482 ip~~~~ 487 (657)
T PTZ00186 482 IPPAPR 487 (657)
T ss_pred CCCCCC
Confidence 455443
No 302
>PF06643 DUF1158: Protein of unknown function (DUF1158); InterPro: IPR010590 This family consists of several enterobacterial YbdJ proteins. The function of this family is unknown
Probab=29.28 E-value=1.3e+02 Score=21.54 Aligned_cols=15 Identities=40% Similarity=0.514 Sum_probs=9.8
Q ss_pred HHHHHHhhcCc-hhhh
Q 028133 52 AVAVTSLAFSP-PSLA 66 (213)
Q Consensus 52 ~~~~~~~~~~~-~a~A 66 (213)
+.++-++++.| |+++
T Consensus 16 ll~~LS~LLLPAP~~g 31 (82)
T PF06643_consen 16 LLAFLSCLLLPAPSLG 31 (82)
T ss_pred HHHHHHHHhcCCchhh
Confidence 66777777765 5553
No 303
>PF08496 Peptidase_S49_N: Peptidase family S49 N-terminal; InterPro: IPR013703 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain is found to the N terminus of bacterial signal peptidases that belong to the MEROPS peptidase family S49 (protease IV family, clan SK) (see also IPR002142 from INTERPRO) [, ]. ; GO: 0004252 serine-type endopeptidase activity, 0005886 plasma membrane
Probab=28.84 E-value=3.1e+02 Score=22.14 Aligned_cols=16 Identities=19% Similarity=0.378 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHH
Q 028133 103 LGNFMDERDNAIKEKL 118 (213)
Q Consensus 103 I~~~Ld~R~~~I~~~l 118 (213)
+.+-.+++++.++..+
T Consensus 47 Lne~Y~~~k~~L~~al 62 (155)
T PF08496_consen 47 LNERYEDMKEQLKQAL 62 (155)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 3344444444444443
No 304
>KOG3778 consensus Uncharacterized conserved protein [Function unknown]
Probab=28.36 E-value=68 Score=30.84 Aligned_cols=12 Identities=8% Similarity=0.290 Sum_probs=7.9
Q ss_pred hhcCchhhhhhh
Q 028133 58 LAFSPPSLAAEI 69 (213)
Q Consensus 58 ~~~~~~a~A~e~ 69 (213)
-+++.|||-++.
T Consensus 535 eV~aAPAHeeh~ 546 (603)
T KOG3778|consen 535 EVLAAPAHEEHM 546 (603)
T ss_pred HHhcCcccHHHH
Confidence 356778886653
No 305
>cd03407 Band_7_4 A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H
Probab=28.16 E-value=3.8e+02 Score=22.93 Aligned_cols=8 Identities=0% Similarity=-0.027 Sum_probs=3.0
Q ss_pred HHHHHHhh
Q 028133 202 SEEIVRKV 209 (213)
Q Consensus 202 A~~ia~Ki 209 (213)
-.+..+++
T Consensus 230 y~e~~~~~ 237 (262)
T cd03407 230 YFDTLKAY 237 (262)
T ss_pred HHHHHHHH
Confidence 33333333
No 306
>PF07083 DUF1351: Protein of unknown function (DUF1351); InterPro: IPR009785 This entry is represented by Lactobacillus prophage Lj928, Orf309. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several bacterial and phage proteins of around 230 residues in length. The function of this family is unknown.
Probab=28.12 E-value=3.7e+02 Score=22.70 Aligned_cols=81 Identities=15% Similarity=0.260 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133 116 EKLNSVKDTSEEVKQLEEQAAAVMRAARAEISAALTKMKKETQLEVEQKLAVGRKKIEAELQEALANLERQKEDTIKSLD 195 (213)
Q Consensus 116 ~~l~eAe~~~~ea~~~~~eae~~L~~Ar~ea~~Ii~~Ak~eAe~e~e~il~~Ak~e~e~~~~~A~~~I~~e~~~a~~eL~ 195 (213)
+.+.++.+.+.+++.+....+....+.+.+...=+++-...... ....+.++...++..+......-+..+.+....+-
T Consensus 39 e~ik~aKk~rA~LNKl~k~id~~RK~ikk~~~~P~~~Fe~~~K~-l~~~i~~~~~~I~~~ik~~Ee~~k~~k~~~i~~~~ 117 (215)
T PF07083_consen 39 ENIKDAKKDRAELNKLKKAIDDKRKEIKKEYSKPIKEFEAKIKE-LIAPIDEASDKIDEQIKEFEEKEKEEKREKIKEYF 117 (215)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55677777777777777777777777777777766666666664 44556666666666666666555555554444443
Q ss_pred HH
Q 028133 196 SQ 197 (213)
Q Consensus 196 ~e 197 (213)
.+
T Consensus 118 ~~ 119 (215)
T PF07083_consen 118 EE 119 (215)
T ss_pred HH
Confidence 33
No 307
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=28.00 E-value=8.3e+02 Score=26.77 Aligned_cols=18 Identities=17% Similarity=0.438 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 028133 192 KSLDSQIAALSEEIVRKV 209 (213)
Q Consensus 192 ~eL~~ei~~lA~~ia~Ki 209 (213)
..|.+++.++-..|-+|+
T Consensus 1734 ~~Le~r~~~vl~~I~~rv 1751 (1758)
T KOG0994|consen 1734 AGLEKRVESVLDHINERV 1751 (1758)
T ss_pred hhHHHHHHHHHHHHhhhh
Confidence 444555555555555554
No 308
>PTZ00473 Plasmodium Vir superfamily; Provisional
Probab=27.99 E-value=79 Score=29.70 Aligned_cols=34 Identities=18% Similarity=0.360 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 028133 84 IMVEFLVLMFALDKIYYSPLGNFMDERDNAIKEKLN 119 (213)
Q Consensus 84 ~lInFlIL~~iL~kfl~kpI~~~Ld~R~~~I~~~l~ 119 (213)
.++.+++++|+|+| |.||+..+..+.++.+....
T Consensus 275 s~lg~~l~fF~lYK--fTPlGs~f~~~~kr~rr~Wr 308 (420)
T PTZ00473 275 SALGGSLSLFILYK--FTPLGSLFGPDKKRRRRRWR 308 (420)
T ss_pred HHHHHHHHHHHHHh--cccchhhhcchhHHHHHHHh
Confidence 34555555666666 78999988877766655443
No 309
>PLN03184 chloroplast Hsp70; Provisional
Probab=27.92 E-value=6.1e+02 Score=25.20 Aligned_cols=16 Identities=19% Similarity=0.270 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHHH
Q 028133 130 QLEEQAAAVMRAARAE 145 (213)
Q Consensus 130 ~~~~eae~~L~~Ar~e 145 (213)
+.+.+.+..+..++..
T Consensus 566 eakN~lE~~iy~~r~~ 581 (673)
T PLN03184 566 DTKNQADSVVYQTEKQ 581 (673)
T ss_pred HHHHhHHHHHHHHHHH
Confidence 3333444444444333
No 310
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=27.88 E-value=1e+02 Score=19.63 Aligned_cols=19 Identities=11% Similarity=0.036 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 028133 83 IIMVEFLVLMFALDKIYYS 101 (213)
Q Consensus 83 ~~lInFlIL~~iL~kfl~k 101 (213)
++++.|+++++++.+..+|
T Consensus 14 ~~v~~~~~F~gi~~w~~~~ 32 (49)
T PF05545_consen 14 GTVLFFVFFIGIVIWAYRP 32 (49)
T ss_pred HHHHHHHHHHHHHHHHHcc
Confidence 3455555555555444333
No 311
>KOG3251 consensus Golgi SNAP receptor complex member [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.70 E-value=63 Score=27.72 Aligned_cols=22 Identities=14% Similarity=0.176 Sum_probs=11.9
Q ss_pred cchHHH-HHHHHHHHHHHHHHHH
Q 028133 78 NLTLPI-IMVEFLVLMFALDKIY 99 (213)
Q Consensus 78 n~tl~~-~lInFlIL~~iL~kfl 99 (213)
|+.+|| .+|..+|++|++++|+
T Consensus 190 Dk~iF~~G~i~~~v~~yl~~~wl 212 (213)
T KOG3251|consen 190 DKIIFYGGVILTLVIMYLFYRWL 212 (213)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHh
Confidence 455566 3555555555555553
No 312
>COG3334 Uncharacterized conserved protein [Function unknown]
Probab=27.58 E-value=3.8e+02 Score=22.65 Aligned_cols=39 Identities=21% Similarity=0.135 Sum_probs=19.8
Q ss_pred cccCCccchHH-HHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 028133 72 AALFDFNLTLP-IIMVEFLVLMFALDKIYYSPLGNFMDER 110 (213)
Q Consensus 72 g~l~~~n~tl~-~~lInFlIL~~iL~kfl~kpI~~~Ld~R 110 (213)
+++|.+++-.+ .-...++.+..++-+|.-.|+....+++
T Consensus 3 ~~~l~~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~e~ed~ 42 (192)
T COG3334 3 KGKLEGLLLLILIPSRFLLLLASAFALFAAKPVGAEAEDA 42 (192)
T ss_pred ccHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccccccch
Confidence 45555443322 2334444444555566666665555555
No 313
>COG2825 HlpA Outer membrane protein [Cell envelope biogenesis, outer membrane]
Probab=27.51 E-value=3.4e+02 Score=22.15 Aligned_cols=25 Identities=12% Similarity=0.185 Sum_probs=12.9
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHH
Q 028133 97 KIYYSPLGNFMDERDNAIKEKLNSV 121 (213)
Q Consensus 97 kfl~kpI~~~Ld~R~~~I~~~l~eA 121 (213)
+-+..++.+....|...+.....+.
T Consensus 43 k~~~~~le~~f~~~~~~lq~~~~el 67 (170)
T COG2825 43 KKVSADLESEFKKRQKELQKMQKEL 67 (170)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555556666665555543333
No 314
>PRK02224 chromosome segregation protein; Provisional
Probab=27.38 E-value=6.6e+02 Score=25.39 Aligned_cols=7 Identities=14% Similarity=-0.107 Sum_probs=3.2
Q ss_pred ccCCCCC
Q 028133 15 SPLPITS 21 (213)
Q Consensus 15 ~~~~~~~ 21 (213)
.|+|...
T Consensus 454 Cp~C~r~ 460 (880)
T PRK02224 454 CPECGQP 460 (880)
T ss_pred CCCCCCc
Confidence 3455443
No 315
>COG3149 PulM Type II secretory pathway, component PulM [Intracellular trafficking and secretion]
Probab=27.04 E-value=2.7e+02 Score=23.25 Aligned_cols=26 Identities=23% Similarity=0.427 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 028133 85 MVEFLVLMFALDKIYYSPLGNFMDERD 111 (213)
Q Consensus 85 lInFlIL~~iL~kfl~kpI~~~Ld~R~ 111 (213)
...|++|+ ++|-.+|.|..+-++.-+
T Consensus 42 ~Ga~L~Lv-i~Y~~~WqP~~erie~~q 67 (181)
T COG3149 42 GGAFLLLV-ILYLLIWQPLSERIEQAQ 67 (181)
T ss_pred hhHHHHHH-HHHHHHhccHHHHHHHHH
Confidence 34444443 445567888765544433
No 316
>KOG4304 consensus Transcriptional repressors of the hairy/E(spl) family (contains HLH) [Transcription]
Probab=26.88 E-value=3.2e+02 Score=23.89 Aligned_cols=55 Identities=20% Similarity=0.212 Sum_probs=32.3
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133 97 KIYYSPLGNFMDERDNAIKEKLNSVKDTSEEVKQLEEQAAAVMRAARAEISAALTKMKKETQ 158 (213)
Q Consensus 97 kfl~kpI~~~Ld~R~~~I~~~l~eAe~~~~ea~~~~~eae~~L~~Ar~ea~~Ii~~Ak~eAe 158 (213)
|-+.|||.+ .+|+++|.+-|++-++.--+..+...+-..++++| +|++-+..--+
T Consensus 32 rk~~Kpl~E--KkRRaRIN~~L~eLK~Li~e~~~~~~~~~sklEKA-----dILEltV~hL~ 86 (250)
T KOG4304|consen 32 RKVRKPLLE--KKRRARINRCLDELKDLIPEALKKDGQRHSKLEKA-----DILELTVNHLR 86 (250)
T ss_pred hhhcchhHH--HHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhHHH-----HHHHHHHHHHH
Confidence 444555544 46788899999887777666655553333344433 55555444433
No 317
>COG1826 TatA Sec-independent protein secretion pathway components [Intracellular trafficking and secretion]
Probab=26.71 E-value=1.3e+02 Score=22.08 Aligned_cols=7 Identities=14% Similarity=0.577 Sum_probs=3.4
Q ss_pred cCCccch
Q 028133 74 LFDFNLT 80 (213)
Q Consensus 74 l~~~n~t 80 (213)
||+++|+
T Consensus 1 M~~ig~~ 7 (94)
T COG1826 1 MFGIGWS 7 (94)
T ss_pred CCCCCHH
Confidence 3445554
No 318
>PRK13857 type IV secretion system pilin subunit VirB2; Provisional
Probab=26.64 E-value=1.4e+02 Score=23.31 Aligned_cols=38 Identities=18% Similarity=0.212 Sum_probs=25.3
Q ss_pred CcccchhhhhhhhhhhhhhhhHHHHHHhhcCchhhhhh
Q 028133 31 PQIKIPQKLLKLSSSALKSLSAVAVTSLAFSPPSLAAE 68 (213)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~A~e 68 (213)
-..+++..+..+-+...-+....+..+++++-||+|..
T Consensus 12 ~~~~~~~~~~~~~~~~~p~~~~a~~~s~~la~PA~AQ~ 49 (120)
T PRK13857 12 NRLSLSNAVMRLLSPHAPSVGGAIGWSIFSSGPAAAQS 49 (120)
T ss_pred cccchHHHHHHHHhhcCchhHHHHHHHHHhcCHHHHHh
Confidence 34455666666655555555566677888899999864
No 319
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=26.56 E-value=5.9e+02 Score=24.54 Aligned_cols=31 Identities=19% Similarity=0.386 Sum_probs=15.2
Q ss_pred CCccchHHHHHHHHHHHHHHHHHHHhhHHHH
Q 028133 75 FDFNLTLPIIMVEFLVLMFALDKIYYSPLGN 105 (213)
Q Consensus 75 ~~~n~tl~~~lInFlIL~~iL~kfl~kpI~~ 105 (213)
+-+||.+.+.++.++.+++++.+++.+++.+
T Consensus 152 ~~~~~~l~li~l~~~~~~~~~~~~~~~~~~~ 182 (585)
T TIGR01192 152 FAMDWRLSIVLMVLGILYILIAKLVMQRTKN 182 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555554444444445555554454443
No 320
>PRK03100 sec-independent translocase; Provisional
Probab=26.46 E-value=3.3e+02 Score=21.66 Aligned_cols=7 Identities=14% Similarity=0.553 Sum_probs=3.6
Q ss_pred cC-Cccch
Q 028133 74 LF-DFNLT 80 (213)
Q Consensus 74 l~-~~n~t 80 (213)
|| ++.|+
T Consensus 1 Mf~~iG~~ 8 (136)
T PRK03100 1 MFANIGWG 8 (136)
T ss_pred CcccccHH
Confidence 45 36554
No 321
>cd00520 RRF Ribosome recycling factor (RRF). Ribosome recycling factor dissociates the posttermination complex, composed of the ribosome, deacylated tRNA, and mRNA, after termination of translation. Thus ribosomes are "recycled" and ready for another round of protein synthesis. RRF is believed to bind the ribosome at the A-site in a manner that mimics tRNA, but the specific mechanisms remain unclear. RRF is essential for bacterial growth. It is not necessary for cell growth in archaea or eukaryotes, but is found in mitochondria or chloroplasts of some eukaryotic species.
Probab=26.40 E-value=3.6e+02 Score=22.08 Aligned_cols=29 Identities=7% Similarity=0.157 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133 164 KLAVGRKKIEAELQEALANLERQKEDTIK 192 (213)
Q Consensus 164 il~~Ak~e~e~~~~~A~~~I~~e~~~a~~ 192 (213)
-...++.+++..-.....+++.....-.+
T Consensus 148 ~~k~~~~~iqkltd~~i~~id~~~~~Kek 176 (179)
T cd00520 148 EVKKAEEDLQKLTDEYIKKIDELLKSKEK 176 (179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555555544444333
No 322
>COG4420 Predicted membrane protein [Function unknown]
Probab=26.38 E-value=4e+02 Score=22.51 Aligned_cols=23 Identities=13% Similarity=0.242 Sum_probs=13.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHhh
Q 028133 79 LTLPIIMVEFLVLMFALDKIYYS 101 (213)
Q Consensus 79 ~tl~~~lInFlIL~~iL~kfl~k 101 (213)
|+++...+.|++++.+++-++++
T Consensus 58 w~fil~~~~~ll~Wi~lNl~~~~ 80 (191)
T COG4420 58 WAFILTFTLLLLLWIVLNLFLVP 80 (191)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhc
Confidence 45555556666666666655544
No 323
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.36 E-value=4.5e+02 Score=23.10 Aligned_cols=39 Identities=15% Similarity=0.216 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133 105 NFMDERDNAIKEKLNSVKDTSEEVKQLEEQAAAVMRAAR 143 (213)
Q Consensus 105 ~~Ld~R~~~I~~~l~eAe~~~~ea~~~~~eae~~L~~Ar 143 (213)
...+.|.-.+.+++...++...+++...++|+..++..+
T Consensus 46 ~~~~~r~~~L~~e~~s~Q~~~~~L~~ev~~~~~~~~s~~ 84 (247)
T COG3879 46 SVRRARDLDLVKELRSLQKKVNTLAAEVEDLENKLDSVR 84 (247)
T ss_pred chhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667777777777777777888888888888888877
No 324
>PRK09343 prefoldin subunit beta; Provisional
Probab=26.34 E-value=3e+02 Score=21.07 Aligned_cols=40 Identities=8% Similarity=0.210 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133 103 LGNFMDERDNAIKEKLNSVKDTSEEVKQLEEQAAAVMRAA 142 (213)
Q Consensus 103 I~~~Ld~R~~~I~~~l~eAe~~~~ea~~~~~eae~~L~~A 142 (213)
+..-+++|.+.|+..+...++....+.+...+.+..+.++
T Consensus 72 ~~~~l~~r~E~ie~~ik~lekq~~~l~~~l~e~q~~l~~l 111 (121)
T PRK09343 72 VEKELKERKELLELRSRTLEKQEKKLREKLKELQAKINEM 111 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888888888887777766666666666666655554
No 325
>PF10107 Endonuc_Holl: Endonuclease related to archaeal Holliday junction resolvase; InterPro: IPR019287 This domain is found in various predicted bacterial endonucleases which are distantly related to archaeal Holliday junction resolvases.
Probab=26.18 E-value=3.6e+02 Score=22.01 Aligned_cols=23 Identities=22% Similarity=0.364 Sum_probs=14.4
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHH
Q 028133 98 IYYSPLGNFMDERDNAIKEKLNS 120 (213)
Q Consensus 98 fl~kpI~~~Ld~R~~~I~~~l~e 120 (213)
+-+--+..-++.|...+-++...
T Consensus 11 ~~~~~l~~~~~~~a~~~fe~wr~ 33 (156)
T PF10107_consen 11 LKYSELQGKIERRARELFEQWRQ 33 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33556677777777766666544
No 326
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=26.15 E-value=3.8e+02 Score=22.20 Aligned_cols=50 Identities=10% Similarity=0.164 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133 105 NFMDERDNAIKEKLNSVKDTSEEVKQLEEQAAAVMRAARAEISAALTKMK 154 (213)
Q Consensus 105 ~~Ld~R~~~I~~~l~eAe~~~~ea~~~~~eae~~L~~Ar~ea~~Ii~~Ak 154 (213)
.+|+.=-...++.+..++.....+-......+..+.+++.++.+.-.+|+
T Consensus 26 ~~l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A~ 75 (221)
T PF04012_consen 26 KMLEQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQAE 75 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444455555544444444445555555555555554444443
No 327
>PRK09702 PTS system arbutin-specific transporter subunit IIB; Provisional
Probab=25.85 E-value=78 Score=25.83 Aligned_cols=23 Identities=13% Similarity=0.213 Sum_probs=14.6
Q ss_pred ccchHHHHHHHHHHHHHHHHHHH
Q 028133 77 FNLTLPIIMVEFLVLMFALDKIY 99 (213)
Q Consensus 77 ~n~tl~~~lInFlIL~~iL~kfl 99 (213)
+-+.++++++-|++|.|++.||=
T Consensus 13 i~iGl~~f~iYyfvF~flI~kfn 35 (161)
T PRK09702 13 IAIGLCFTLLYFVVFRTLILQFN 35 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcC
Confidence 34456666777777777766653
No 328
>PF01544 CorA: CorA-like Mg2+ transporter protein; InterPro: IPR002523 The CorA transport system is the primary Mg2+ influx system of Salmonella typhimurium and Escherichia coli [, ]. CorA is virtually ubiquitous in the Bacteria and Archaea. There are also eukaryotic relatives of this protein. Transporter ZntB mediates efflux of zinc ions [].; GO: 0046873 metal ion transmembrane transporter activity, 0030001 metal ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 2HN1_A 3NWI_D 3NVO_B 3CK6_A 2IUB_E 2BBJ_E 2HN2_A 2BBH_A.
Probab=25.78 E-value=59 Score=27.57 Aligned_cols=15 Identities=13% Similarity=0.412 Sum_probs=8.7
Q ss_pred HHHHHhhcCchhhhh
Q 028133 53 VAVTSLAFSPPSLAA 67 (213)
Q Consensus 53 ~~~~~~~~~~~a~A~ 67 (213)
+.+.++++.|.++-+
T Consensus 237 LT~~t~iflPlt~i~ 251 (292)
T PF01544_consen 237 LTIVTAIFLPLTFIT 251 (292)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHH
Confidence 444555666667763
No 329
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=25.74 E-value=4.3e+02 Score=22.68 Aligned_cols=102 Identities=19% Similarity=0.231 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133 101 SPLGNFMDERDNAIKEKLNSVKDTSEEVKQLEEQAAAVMRAARAEISAALTKMKKETQLEVEQKLAVGRKKIEAELQEAL 180 (213)
Q Consensus 101 kpI~~~Ld~R~~~I~~~l~eAe~~~~ea~~~~~eae~~L~~Ar~ea~~Ii~~Ak~eAe~e~e~il~~Ak~e~e~~~~~A~ 180 (213)
.++.++.+==...+.+.++.+++-..-+++...+.+..|.+++....+++...+ ..+.-+++.+...++...+|+
T Consensus 2 ~i~~r~~~~~~a~~~~~~dk~EDp~~~l~Q~ird~~~~l~~ar~~~A~~~a~~k-----~~e~~~~~~~~~~~k~e~~A~ 76 (225)
T COG1842 2 GIFSRLKDLVKANINELLDKAEDPEKMLEQAIRDMESELAKARQALAQAIARQK-----QLERKLEEAQARAEKLEEKAE 76 (225)
T ss_pred chHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133 181 ANLERQKEDTIKSLDSQIAALSEEIVR 207 (213)
Q Consensus 181 ~~I~~e~~~a~~eL~~ei~~lA~~ia~ 207 (213)
..+..-.+....++-.+..++-..+..
T Consensus 77 ~Al~~g~E~LAr~al~~~~~le~~~~~ 103 (225)
T COG1842 77 LALQAGNEDLAREALEEKQSLEDLAKA 103 (225)
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHHHH
No 330
>PF07047 OPA3: Optic atrophy 3 protein (OPA3); InterPro: IPR010754 OPA3 deficiency causes type III 3-methylglutaconic aciduria (MGA) in humans. This disease manifests with early bilateral optic atrophy, spasticity, extrapyramidal dysfunction, ataxia, and cognitive deficits, but normal longevity []. This family consists of several optic atrophy 3 (OPA3) proteins and related proteins from other eukaryotic species, the function is unknown.
Probab=25.72 E-value=3.2e+02 Score=21.26 Aligned_cols=26 Identities=15% Similarity=-0.049 Sum_probs=15.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhHHHH
Q 028133 80 TLPIIMVEFLVLMFALDKIYYSPLGN 105 (213)
Q Consensus 80 tl~~~lInFlIL~~iL~kfl~kpI~~ 105 (213)
.++.-++.|+|..+++.+=.|+--.+
T Consensus 77 ell~E~fiF~Va~~li~~E~~Rs~~k 102 (134)
T PF07047_consen 77 ELLGEAFIFSVAAGLIIYEYWRSARK 102 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45556677777777766655554433
No 331
>PRK09470 cpxA two-component sensor protein; Provisional
Probab=25.52 E-value=4.9e+02 Score=23.26 Aligned_cols=22 Identities=18% Similarity=0.196 Sum_probs=12.6
Q ss_pred HHHHHHHHHHhhHHHHHHHHHH
Q 028133 90 VLMFALDKIYYSPLGNFMDERD 111 (213)
Q Consensus 90 IL~~iL~kfl~kpI~~~Ld~R~ 111 (213)
+++|++.+.+.+|+...-+.-+
T Consensus 181 ~~~~~~~~~i~~pl~~l~~~~~ 202 (461)
T PRK09470 181 PLLLWLAWSLAKPARKLKNAAD 202 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455667788876554433
No 332
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=25.49 E-value=2.6e+02 Score=27.56 Aligned_cols=32 Identities=6% Similarity=0.120 Sum_probs=14.6
Q ss_pred CCccchHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 028133 75 FDFNLTLPIIMVEFLVLMFALDKIYYSPLGNF 106 (213)
Q Consensus 75 ~~~n~tl~~~lInFlIL~~iL~kfl~kpI~~~ 106 (213)
+-++|.+.+.++.++++++++.+++.+++.+.
T Consensus 291 ~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~ 322 (708)
T TIGR01193 291 VRQNMLLFLLSLLSIPVYAVIIILFKRTFNKL 322 (708)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445444444444444444444444444443
No 333
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=25.38 E-value=5.5e+02 Score=23.77 Aligned_cols=20 Identities=10% Similarity=0.248 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 028133 148 AALTKMKKETQLEVEQKLAV 167 (213)
Q Consensus 148 ~Ii~~Ak~eAe~e~e~il~~ 167 (213)
..+.+.++.++..+++-++.
T Consensus 343 p~I~~lr~~~~~i~~~el~~ 362 (423)
T PRK00045 343 PTIRALREQAEEIREEELER 362 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444333333
No 334
>TIGR02791 VirB5 P-type DNA transfer protein VirB5. The VirB5 protein is involved in the type IV DNA secretion systems typified by the Agrobacterium Ti plasmid vir system where it interacts with several other proteins essential for proper pilus formation. VirB5 is homologous to the IncN (N-type) conjugation system protein TraC as well as the P-type protein TrbJ and the F-type protein TraE.
Probab=25.12 E-value=4.2e+02 Score=22.32 Aligned_cols=18 Identities=22% Similarity=0.361 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 028133 120 SVKDTSEEVKQLEEQAAA 137 (213)
Q Consensus 120 eAe~~~~ea~~~~~eae~ 137 (213)
..++++++.++.+.+|..
T Consensus 49 q~~ql~~Q~~q~k~~y~s 66 (220)
T TIGR02791 49 QYEQLSEQIEQYKQQYGS 66 (220)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333444444444444433
No 335
>PF07431 DUF1512: Protein of unknown function (DUF1512); InterPro: IPR009995 This family consists of several archaeal proteins of around 370 residues in length. The function of this family is unknown.
Probab=25.03 E-value=4.1e+02 Score=24.60 Aligned_cols=15 Identities=20% Similarity=0.534 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHH
Q 028133 82 PIIMVEFLVLMFALD 96 (213)
Q Consensus 82 ~~~lInFlIL~~iL~ 96 (213)
+++++.|+++++++.
T Consensus 6 ii~~l~~~~~i~~~q 20 (355)
T PF07431_consen 6 IISMLIWFLFIFIFQ 20 (355)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444555555543
No 336
>PF13937 DUF4212: Domain of unknown function (DUF4212)
Probab=25.00 E-value=2.7e+02 Score=20.10 Aligned_cols=48 Identities=17% Similarity=0.147 Sum_probs=23.5
Q ss_pred hhhhhhhhhcccCCccchHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 028133 63 PSLAAEIEKAALFDFNLTLPIIMVEFLVLMFALDKIYYSPLGNFMDERD 111 (213)
Q Consensus 63 ~a~A~e~~~g~l~~~n~tl~~~lInFlIL~~iL~kfl~kpI~~~Ld~R~ 111 (213)
+-+|.+-..-.++++.+. +|+.-...+++|++--++|--..+-+|++.
T Consensus 30 ~lfa~~Ln~~~~~GfPlg-fw~aaQGsi~~fviLi~~Ya~~mnrlD~~~ 77 (81)
T PF13937_consen 30 ILFADELNQITFGGFPLG-FWFAAQGSIIVFVILIFVYAWRMNRLDRKY 77 (81)
T ss_pred HHHHHHHcCCeeCCCChH-HHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334543322335566554 344444444444444555666666666653
No 337
>PF06459 RR_TM4-6: Ryanodine Receptor TM 4-6; InterPro: IPR009460 The release of Ca2+ ions from intracellular stores is a key step in a wide variety of cellular functions. In striated muscle, the release of Ca2+ from the sarcoplasmic reticulum (SR) leads to muscle contraction. Ca2+ release occurs through large, high-conductance Ca2+ release channels, also known as ryanodine receptors (RyRs) because they bind the plant alkaloid ryanodine with high affinity and specificity []. This region covers TM regions 4-6 of the ryanodine receptor 1 family.; GO: 0005219 ryanodine-sensitive calcium-release channel activity, 0006874 cellular calcium ion homeostasis, 0016021 integral to membrane
Probab=25.00 E-value=54 Score=29.14 Aligned_cols=11 Identities=18% Similarity=0.794 Sum_probs=7.5
Q ss_pred HHHHHHHHHHH
Q 028133 84 IMVEFLVLMFA 94 (213)
Q Consensus 84 ~lInFlIL~~i 94 (213)
+.|||++|+|=
T Consensus 182 FaINFILLFYK 192 (274)
T PF06459_consen 182 FAINFILLFYK 192 (274)
T ss_pred HHHHHHHHHHH
Confidence 67777777654
No 338
>PF10222 DUF2152: Uncharacterized conserved protein (DUF2152); InterPro: IPR018795 This entry includes mainly uncharacterised proteins, though some are described as belonging to the glycoside hydrolase family 65.
Probab=24.94 E-value=83 Score=31.12 Aligned_cols=42 Identities=19% Similarity=0.245 Sum_probs=23.7
Q ss_pred cCchhhhhhhhh----cccCCccchHHHHHHHHHHHHH--HHHHHHhh
Q 028133 60 FSPPSLAAEIEK----AALFDFNLTLPIIMVEFLVLMF--ALDKIYYS 101 (213)
Q Consensus 60 ~~~~a~A~e~~~----g~l~~~n~tl~~~lInFlIL~~--iL~kfl~k 101 (213)
+.-|||-++... |..++=-+++||..|.|+|++| ||.|.+|+
T Consensus 543 ~~~pah~~~~~~~~~~gh~~~glp~~fw~~~~~li~~fhlfl~kli~~ 590 (604)
T PF10222_consen 543 VEAPAHEEHVIALHRHGHRLGGLPTLFWVSIASLIILFHLFLFKLIYN 590 (604)
T ss_pred ccCCCchHHHHHhccccccCCCCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 444677654321 2222222468887777777766 66677665
No 339
>COG4736 CcoQ Cbb3-type cytochrome oxidase, subunit 3 [Posttranslational modification, protein turnover, chaperones]
Probab=24.94 E-value=87 Score=21.48 Aligned_cols=30 Identities=13% Similarity=0.083 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 028133 82 PIIMVEFLVLMFALDKIYYSPLGNFMDERD 111 (213)
Q Consensus 82 ~~~lInFlIL~~iL~kfl~kpI~~~Ld~R~ 111 (213)
.|.++.|+++++.+..++|.|=++---++.
T Consensus 12 a~~t~~~~l~fiavi~~ayr~~~K~~~d~a 41 (60)
T COG4736 12 AWGTIAFTLFFIAVIYFAYRPGKKGEFDEA 41 (60)
T ss_pred HHHHHHHHHHHHHHHHHHhcccchhhHHHH
Confidence 344555666666666677777655443333
No 340
>cd07591 BAR_Rvs161p The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Reduced viability upon starvation protein 161 and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of fungal proteins with similarity to Saccharomyces cerevisiae Reduced viability upon starvation protein 161 (Rvs161p) and Schizosaccharomyces pombe Hob3 (homolog of Bin3). S. cerevisiae Rvs161p plays a role in regulating cell polarity, actin cytoskeleton polarization, vesicle trafficking, endocytosis, bud formation, and the mating response. It forms a heterodimer with another BAR domain protein Rvs167p. Rvs161p and Rvs167p share common functions but are not interchangeable. Their BAR domains cannot be replaced with each other and the overexpression of one cannot suppress the mutant phenotypes of the other. S. pombe Hob3 is important in regulating filamentous actin localization an
Probab=24.76 E-value=3.2e+02 Score=23.25 Aligned_cols=15 Identities=7% Similarity=0.479 Sum_probs=10.6
Q ss_pred hhHHHHHHHHHHHHH
Q 028133 100 YSPLGNFMDERDNAI 114 (213)
Q Consensus 100 ~kpI~~~Ld~R~~~I 114 (213)
++++.+.|.+|..+.
T Consensus 108 ~~~i~k~IkKR~~Kl 122 (224)
T cd07591 108 FPEINEAIKKRNHKL 122 (224)
T ss_pred hhhHHHHHHHHHhhH
Confidence 667777777777654
No 341
>PRK11085 magnesium/nickel/cobalt transporter CorA; Provisional
Probab=24.50 E-value=1.4e+02 Score=26.89 Aligned_cols=18 Identities=39% Similarity=0.637 Sum_probs=12.4
Q ss_pred HHHHHHhhcCchhhhhhh
Q 028133 52 AVAVTSLAFSPPSLAAEI 69 (213)
Q Consensus 52 ~~~~~~~~~~~~a~A~e~ 69 (213)
...+.+++++||.+=++.
T Consensus 258 ~lTv~s~if~pptliagi 275 (316)
T PRK11085 258 IFSVVSVVFLPPTLVASS 275 (316)
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 345666788999986543
No 342
>PRK10755 sensor protein BasS/PmrB; Provisional
Probab=24.43 E-value=4.7e+02 Score=22.69 Aligned_cols=21 Identities=19% Similarity=0.279 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHhhHHHHH
Q 028133 86 VEFLVLMFALDKIYYSPLGNF 106 (213)
Q Consensus 86 InFlIL~~iL~kfl~kpI~~~ 106 (213)
+.++++.|++.+.+.+|+.+.
T Consensus 72 ~~~~~~~~~~~~~~~~pl~~l 92 (356)
T PRK10755 72 SLTLLICFQAVRWITRPLAEL 92 (356)
T ss_pred HHHHHHHHHHHHHHHhHHHHH
Confidence 344444555556677777654
No 343
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=24.42 E-value=5.3e+02 Score=23.26 Aligned_cols=32 Identities=9% Similarity=0.300 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133 104 GNFMDERDNAIKEKLNSVKDTSEEVKQLEEQA 135 (213)
Q Consensus 104 ~~~Ld~R~~~I~~~l~eAe~~~~ea~~~~~ea 135 (213)
..-|.+-++++.+.-.++++.+.++...++.+
T Consensus 74 kakLkes~~~l~dRetEI~eLksQL~RMrEDW 105 (305)
T PF15290_consen 74 KAKLKESENRLHDRETEIDELKSQLARMREDW 105 (305)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444555555444443
No 344
>PF15361 RIC3: Resistance to inhibitors of cholinesterase homologue 3
Probab=24.32 E-value=72 Score=25.76 Aligned_cols=14 Identities=14% Similarity=0.387 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHH
Q 028133 85 MVEFLVLMFALDKI 98 (213)
Q Consensus 85 lInFlIL~~iL~kf 98 (213)
+=.|+|++|++|.+
T Consensus 88 lYtiGI~~f~lY~l 101 (152)
T PF15361_consen 88 LYTIGIVLFILYTL 101 (152)
T ss_pred HHHHHHHHHHHHHH
Confidence 34566666666654
No 345
>PHA03047 IMV membrane receptor-like protein; Provisional
Probab=24.25 E-value=68 Score=21.44 Aligned_cols=19 Identities=16% Similarity=0.345 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 028133 83 IIMVEFLVLMFALDKIYYS 101 (213)
Q Consensus 83 ~~lInFlIL~~iL~kfl~k 101 (213)
++++..++++|++++|++.
T Consensus 33 iF~iqsi~FmWFifHFvhS 51 (53)
T PHA03047 33 IFFIQSILFMWFIFHFVHS 51 (53)
T ss_pred eeHHHHHHHHHHHHHHHHh
Confidence 3456777889999999874
No 346
>PRK04863 mukB cell division protein MukB; Provisional
Probab=24.15 E-value=6.7e+02 Score=27.77 Aligned_cols=89 Identities=11% Similarity=0.114 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133 103 LGNFMDERDNAIKEKLNSVKDTSEEVKQLEEQAAAVMRAARAEISAALTKMKKETQLEVEQKLAVGRKKIEAELQEALAN 182 (213)
Q Consensus 103 I~~~Ld~R~~~I~~~l~eAe~~~~ea~~~~~eae~~L~~Ar~ea~~Ii~~Ak~eAe~e~e~il~~Ak~e~e~~~~~A~~~ 182 (213)
+..-+.++-..+++....+.+...++++..++++..+...+...+ ..++..++.+.+.+++=-.+...++.....-+.+
T Consensus 986 ~~~~Le~~Le~iE~~~~~areql~qaq~q~~q~~q~l~slksslq-~~~e~L~E~eqe~~~~g~~~~~~~~~~~~~~~~~ 1064 (1486)
T PRK04863 986 LNEKLRQRLEQAEQERTRAREQLRQAQAQLAQYNQVLASLKSSYD-AKRQMLQELKQELQDLGVPADSGAEERARARRDE 1064 (1486)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHcCCCCCccHHHHHHHhHHH
Q ss_pred HHHHHHHHHH
Q 028133 183 LERQKEDTIK 192 (213)
Q Consensus 183 I~~e~~~a~~ 192 (213)
+.......+.
T Consensus 1065 l~~~l~~~~~ 1074 (1486)
T PRK04863 1065 LHARLSANRS 1074 (1486)
T ss_pred HHHHHHHhHH
No 347
>PHA02724 hydrophobic IMV membrane protein; Provisional
Probab=24.09 E-value=49 Score=22.12 Aligned_cols=19 Identities=21% Similarity=0.317 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 028133 83 IIMVEFLVLMFALDKIYYS 101 (213)
Q Consensus 83 ~~lInFlIL~~iL~kfl~k 101 (213)
++++...+++|++++|++.
T Consensus 33 iF~~qsi~FmWFifHFvhS 51 (53)
T PHA02724 33 IFAVQTIVFIWFIFHFVHS 51 (53)
T ss_pred eehHHHHHHHHHHHHHHhc
Confidence 3456777889999999875
No 348
>PRK13561 putative diguanylate cyclase; Provisional
Probab=23.97 E-value=3e+02 Score=26.59 Aligned_cols=25 Identities=16% Similarity=0.453 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHH
Q 028133 88 FLVLMFALDKIYYSPLGNFMDERDN 112 (213)
Q Consensus 88 FlIL~~iL~kfl~kpI~~~Ld~R~~ 112 (213)
.+++.|++.+.+.+|+.+..+.-++
T Consensus 160 ~~~l~~~~~~~i~~PL~~l~~~~~~ 184 (651)
T PRK13561 160 TVAISWCINRLIVHPLRNIARELND 184 (651)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 3455566778889999877665443
No 349
>PF11875 DUF3395: Domain of unknown function (DUF3395); InterPro: IPR024586 Chaperone DnaJ was originally characterised from Escherichia coli as a 41 kDa heat shock protein. DnaJ has a modular structure consisting of a J-domain, a proximal G/F-domain, and a distal zinc finger domain, followed by less conserved C-terminal sequences. Since then, a large number of DnaJ-related proteins containing a J-domain have been characterised from a variety of different organisms. In the genome of Arabidopsis thaliana a total of 89 J-domain proteins have been identified []. This entry represents a C-terminal domain found in some eukaryotic DnaJ-like proteins, including member 11 from the subfamily C1 and protein DnaJ 13 from Arabidopsis. This domain is typically between 147 to 176 amino acids in length.
Probab=23.96 E-value=3.8e+02 Score=21.41 Aligned_cols=25 Identities=28% Similarity=0.351 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133 130 QLEEQAAAVMRAARAEISAALTKMK 154 (213)
Q Consensus 130 ~~~~eae~~L~~Ar~ea~~Ii~~Ak 154 (213)
+.+++....+.+.|+++.+.++-++
T Consensus 13 ~~r~~~~~~~~~~r~eA~~~~~lm~ 37 (151)
T PF11875_consen 13 EQREKNKEEIAEKRAEAESAIELMK 37 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444333333
No 350
>PF14276 DUF4363: Domain of unknown function (DUF4363)
Probab=23.81 E-value=3.2e+02 Score=20.47 Aligned_cols=12 Identities=25% Similarity=0.371 Sum_probs=4.6
Q ss_pred HHHHHHHHHHHH
Q 028133 124 TSEEVKQLEEQA 135 (213)
Q Consensus 124 ~~~ea~~~~~ea 135 (213)
+..+.+++....
T Consensus 47 A~~~~~~l~~~W 58 (121)
T PF14276_consen 47 AYKETEELEKEW 58 (121)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 351
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=23.73 E-value=1.1e+03 Score=26.91 Aligned_cols=47 Identities=9% Similarity=0.199 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133 103 LGNFMDERDNAIKEKLNSVKDTSEEVKQLEEQAAAVMRAARAEISAA 149 (213)
Q Consensus 103 I~~~Ld~R~~~I~~~l~eAe~~~~ea~~~~~eae~~L~~Ar~ea~~I 149 (213)
..+-+..|.+.+.++++.-+..+.+++..+.+....+.+-+.+.++-
T Consensus 1098 ~i~eL~~~i~el~e~le~er~~r~K~ek~r~dL~~ele~l~~~Lee~ 1144 (1930)
T KOG0161|consen 1098 QIKELEARIKELEEELEAERASRAKAERQRRDLSEELEELKEELEEQ 1144 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666666666655556666665555555555555555444
No 352
>cd03401 Band_7_prohibitin Band_7_prohibitin. A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup group includes proteins similar to prohibitin (a lipid raft-associated integral membrane protein). Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. These microdomains in addition to being stable scaffolds may also be also dynamic units with their own regulatory functions. Prohibitin is a mitochondrial inner-membrane protein which may act as a chaperone for the stabilization of mitochondrial proteins. Human prohibitin forms a heter-oligomeric complex with Bap-37 (prohibitin 2, a band 7 domain carrying homologue). This complex may protect non-assembled membrane proteins against proteolysis by the m-AAA protease. Prohibitin and Bap-37 yeast homologues have been implicated in yeast longevity and, in the maintenance of mitochondrial morphology.
Probab=23.68 E-value=2.7e+02 Score=22.35 Aligned_cols=23 Identities=30% Similarity=0.323 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 028133 133 EQAAAVMRAARAEISAALTKMKK 155 (213)
Q Consensus 133 ~eae~~L~~Ar~ea~~Ii~~Ak~ 155 (213)
++++..+..|+.+++..+.+|+-
T Consensus 169 ~~a~~~~~~a~~ea~~~~~~A~g 191 (196)
T cd03401 169 ERAKFVVEKAEQEKQAAVIRAEG 191 (196)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhh
Confidence 33333444444444444443333
No 353
>PRK10404 hypothetical protein; Provisional
Probab=23.64 E-value=3.2e+02 Score=20.45 Aligned_cols=12 Identities=25% Similarity=0.365 Sum_probs=4.5
Q ss_pred HHHHHHHHHHHH
Q 028133 128 VKQLEEQAAAVM 139 (213)
Q Consensus 128 a~~~~~eae~~L 139 (213)
+..+..+.+..+
T Consensus 14 l~~L~~dle~Ll 25 (101)
T PRK10404 14 LTLLSETLEEVL 25 (101)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 354
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=23.48 E-value=8.5e+02 Score=26.03 Aligned_cols=28 Identities=29% Similarity=0.303 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133 150 LTKMKKETQLEVEQKLAVGRKKIEAELQ 177 (213)
Q Consensus 150 i~~Ak~eAe~e~e~il~~Ak~e~e~~~~ 177 (213)
++.-..+++..++.-+.++.++++..+.
T Consensus 774 lE~~~~d~~~~re~rlkdl~keik~~k~ 801 (1174)
T KOG0933|consen 774 LEKKMKDAKANRERRLKDLEKEIKTAKQ 801 (1174)
T ss_pred HHHHHhHhhhhhHhHHHHHHHHHHHHHH
Confidence 4444555555555555555555544333
No 355
>PTZ00400 DnaK-type molecular chaperone; Provisional
Probab=23.47 E-value=7.3e+02 Score=24.58 Aligned_cols=14 Identities=7% Similarity=0.254 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHHH
Q 028133 130 QLEEQAAAVMRAAR 143 (213)
Q Consensus 130 ~~~~eae~~L~~Ar 143 (213)
+++.+.+..+-.+|
T Consensus 568 eakN~lEs~iy~~r 581 (663)
T PTZ00400 568 DAKNEAETLIYSVE 581 (663)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333444333333
No 356
>PF04277 OAD_gamma: Oxaloacetate decarboxylase, gamma chain ; InterPro: IPR005899 This family comprises distantly related, low complexity, hydrophobic small subunits of several related sodium ion-pumping decarboxylases. These include oxaloacetate decarboxylase gamma subunit and methylmalonyl-CoA decarboxylase delta subunit [].; GO: 0008948 oxaloacetate decarboxylase activity, 0015081 sodium ion transmembrane transporter activity, 0071436 sodium ion export, 0016020 membrane
Probab=23.41 E-value=1.1e+02 Score=21.19 Aligned_cols=14 Identities=29% Similarity=0.453 Sum_probs=6.1
Q ss_pred chHHHHHHHHHHHH
Q 028133 79 LTLPIIMVEFLVLM 92 (213)
Q Consensus 79 ~tl~~~lInFlIL~ 92 (213)
.+++...+.|++|+
T Consensus 7 i~i~Gm~iVF~~L~ 20 (79)
T PF04277_consen 7 IMIIGMGIVFLVLI 20 (79)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444433
No 357
>PF08285 DPM3: Dolichol-phosphate mannosyltransferase subunit 3 (DPM3); InterPro: IPR013174 This family corresponds to subunit 3 of dolichol-phosphate mannosyltransferase, an enzyme which generates mannosyl donors for glycosylphosphatidylinositols, N-glycan and protein O- and C-mannosylation. DPM3 is an integral membrane protein and plays a role in stabilising the dolichol-phosphate mannosyl transferase complex [].
Probab=23.25 E-value=1.1e+02 Score=22.69 Aligned_cols=16 Identities=19% Similarity=0.270 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHH
Q 028133 140 RAARAEISAALTKMKK 155 (213)
Q Consensus 140 ~~Ar~ea~~Ii~~Ak~ 155 (213)
.+|..|-++-|++||+
T Consensus 67 peA~~eL~~eI~eAK~ 82 (91)
T PF08285_consen 67 PEAAKELQKEIKEAKA 82 (91)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444444444444433
No 358
>PRK05978 hypothetical protein; Provisional
Probab=23.14 E-value=1.8e+02 Score=23.54 Aligned_cols=50 Identities=10% Similarity=0.192 Sum_probs=23.8
Q ss_pred HHHHHHhhcCchhhhhhhhhcccCCccchHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 028133 52 AVAVTSLAFSPPSLAAEIEKAALFDFNLTLPIIMVEFLVLMFALDKIYYSPLGNFM 107 (213)
Q Consensus 52 ~~~~~~~~~~~~a~A~e~~~g~l~~~n~tl~~~lInFlIL~~iL~kfl~kpI~~~L 107 (213)
.+.++..++.+..+..+. .++ +.+...++.++.+..++.-++.+|++..+
T Consensus 75 ~i~ivg~ivv~~~l~~~~----~~~--pp~w~~~~i~~~l~lil~L~LL~p~KG~l 124 (148)
T PRK05978 75 VIVIVGHIVVGGFMGTET----TFN--LPVWLHLAIWLPITLIASLALLQPIKGAV 124 (148)
T ss_pred hHHHHHHHHHHHHHHHHH----HcC--CcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444445555555432 232 33333444444454455555666666544
No 359
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=22.95 E-value=6.6e+02 Score=23.88 Aligned_cols=38 Identities=11% Similarity=0.250 Sum_probs=19.3
Q ss_pred cCCccchHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 028133 74 LFDFNLTLPIIMVEFLVLMFALDKIYYSPLGNFMDERD 111 (213)
Q Consensus 74 l~~~n~tl~~~lInFlIL~~iL~kfl~kpI~~~Ld~R~ 111 (213)
++-++|.+.+.++.++++++++.++..+++.+.-+++.
T Consensus 160 l~~~~~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~ 197 (582)
T PRK11176 160 MFYYSWQLSLILIVIAPIVSIAIRVVSKRFRNISKNMQ 197 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455655554444445555555555555555444443
No 360
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=22.84 E-value=4e+02 Score=26.51 Aligned_cols=67 Identities=18% Similarity=0.125 Sum_probs=36.1
Q ss_pred hhhhhhhhhhhh-HHHHHHhhcCchhhhhhhhhcccCCccchHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 028133 40 LKLSSSALKSLS-AVAVTSLAFSPPSLAAEIEKAALFDFNLTLPIIMVEFLVLMFALDKIYYSPLGNF 106 (213)
Q Consensus 40 ~~~~~~~~~~~~-~~~~~~~~~~~~a~A~e~~~g~l~~~n~tl~~~lInFlIL~~iL~kfl~kpI~~~ 106 (213)
++|...-+.+.. ++.|+.++.-.+..-.-..+|.-|++...++|.++.++++--++..++-+|+.+.
T Consensus 166 ~~l~~g~l~s~islisF~~iLw~lsg~~~~~~~g~~~~I~g~mv~~~i~Ya~~~s~~~~~iGr~Li~L 233 (604)
T COG4178 166 LDLSFGLLQSVISLISFTGILWSLSGGLAFTIGGFSFGIPGYMVWAVIIYAISASLLTHLIGRPLIRL 233 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCcceEeecccccccchHHHHHHHHHHHHHHHHHHHHccccccc
Confidence 334444444444 5556665553322111112234455555677777777777777777777776653
No 361
>PRK14153 heat shock protein GrpE; Provisional
Probab=22.79 E-value=4.6e+02 Score=22.03 Aligned_cols=24 Identities=13% Similarity=0.146 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 028133 160 EVEQKLAVGRKKIEAELQEALANL 183 (213)
Q Consensus 160 e~e~il~~Ak~e~e~~~~~A~~~I 183 (213)
+.++.+...+++.+..+..+...+
T Consensus 62 EfeN~rKR~~kE~e~~~~~a~~~~ 85 (194)
T PRK14153 62 EFDNFRKRTAREMEENRKFVLEQV 85 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333444444333333333
No 362
>PF06210 DUF1003: Protein of unknown function (DUF1003); InterPro: IPR010406 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=22.77 E-value=3.5e+02 Score=20.54 Aligned_cols=15 Identities=27% Similarity=0.242 Sum_probs=6.5
Q ss_pred hhHHHHHHHHHHHHH
Q 028133 100 YSPLGNFMDERDNAI 114 (213)
Q Consensus 100 ~kpI~~~Ld~R~~~I 114 (213)
..|+.=+=.+|+...
T Consensus 49 ~ap~IlmsQNRq~~~ 63 (108)
T PF06210_consen 49 QAPLILMSQNRQAAR 63 (108)
T ss_pred HHHHHHHHhhHhHHH
Confidence 344444444444433
No 363
>COG3105 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.73 E-value=4e+02 Score=21.25 Aligned_cols=80 Identities=13% Similarity=0.037 Sum_probs=37.4
Q ss_pred cchH-HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133 78 NLTL-PIIMVEFLVLMFALDKIYYSPLGNFMDERDNAIKEKLNSVKDTSEEVKQLEEQAAAVMRAARAEISAALTKMKKE 156 (213)
Q Consensus 78 n~tl-~~~lInFlIL~~iL~kfl~kpI~~~Ld~R~~~I~~~l~eAe~~~~ea~~~~~eae~~L~~Ar~ea~~Ii~~Ak~e 156 (213)
|||+ .|......+++++..-++.-.+.+-=-+-+...+.+++.+ +.-..+|++++..==.+..++++..-.+
T Consensus 2 nwt~~~W~~a~igLvvGi~IG~li~Rlt~~~~k~q~~~q~ELe~~-------K~~ld~~rqel~~HFa~sAeLlktl~~d 74 (138)
T COG3105 2 NWTFMTWEYALIGLVVGIIIGALIARLTNRKLKQQQKLQYELEKV-------KAQLDEYRQELVKHFARSAELLKTLAQD 74 (138)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHcchhhhhHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5653 4544444444444444444444433333344444444432 2233444555555555555666665555
Q ss_pred HHHHHHHH
Q 028133 157 TQLEVEQK 164 (213)
Q Consensus 157 Ae~e~e~i 164 (213)
-+..++.+
T Consensus 75 YqklyqHm 82 (138)
T COG3105 75 YQKLYQHM 82 (138)
T ss_pred HHHHHHHH
Confidence 55555444
No 364
>PF06129 Chordopox_G3: Chordopoxvirus G3 protein; InterPro: IPR010367 This family consists of several poxvirus specific G3 proteins. The function of this family is unknown.
Probab=22.61 E-value=85 Score=24.13 Aligned_cols=22 Identities=14% Similarity=0.334 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHhhHHHH
Q 028133 84 IMVEFLVLMFALDKIYYSPLGN 105 (213)
Q Consensus 84 ~lInFlIL~~iL~kfl~kpI~~ 105 (213)
-++.|++++.++++|-|.|..+
T Consensus 5 ~l~ffi~Fl~~~Y~~~y~PTNK 26 (109)
T PF06129_consen 5 YLIFFILFLVLCYFFNYYPTNK 26 (109)
T ss_pred HHHHHHHHHHHHHHHhhccchH
Confidence 3455556666667777788765
No 365
>TIGR02350 prok_dnaK chaperone protein DnaK. Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.
Probab=22.54 E-value=7.1e+02 Score=24.05 Aligned_cols=14 Identities=14% Similarity=0.183 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHHH
Q 028133 130 QLEEQAAAVMRAAR 143 (213)
Q Consensus 130 ~~~~eae~~L~~Ar 143 (213)
+++.+.+..+-.+|
T Consensus 525 e~kn~lEs~iy~~r 538 (595)
T TIGR02350 525 EARNNADSLAYQAE 538 (595)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333444433333
No 366
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=22.49 E-value=3e+02 Score=27.09 Aligned_cols=30 Identities=10% Similarity=0.098 Sum_probs=12.8
Q ss_pred CccchHHHHHHHHHHHHHHHHHHHhhHHHH
Q 028133 76 DFNLTLPIIMVEFLVLMFALDKIYYSPLGN 105 (213)
Q Consensus 76 ~~n~tl~~~lInFlIL~~iL~kfl~kpI~~ 105 (213)
-++|.+.+.++.++++++++..++.+++.+
T Consensus 290 ~~~~~l~li~l~~~~~~~~~~~~~~~~~~~ 319 (710)
T TIGR03796 290 LYDPVLTLIGIAFAAINVLALQLVSRRRVD 319 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444443334444444444444444443
No 367
>cd07623 BAR_SNX1_2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 1 and 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX1, SNX2, and similar proteins. SNX1 and SNX2 are components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), wh
Probab=22.48 E-value=4.7e+02 Score=22.00 Aligned_cols=28 Identities=18% Similarity=0.286 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHH--hhHHHHHHHHHHHHHH
Q 028133 88 FLVLMFALDKIY--YSPLGNFMDERDNAIK 115 (213)
Q Consensus 88 FlIL~~iL~kfl--~kpI~~~Ld~R~~~I~ 115 (213)
++.|.-.|..|+ ...+..++..|.+...
T Consensus 94 ~~~l~e~L~eY~r~i~svk~~f~~R~~a~~ 123 (224)
T cd07623 94 FYILAELLKDYIGLIGAIKDVFHERVKVWQ 123 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444443 5678889999887764
No 368
>PRK06531 yajC preprotein translocase subunit YajC; Validated
Probab=22.38 E-value=1.5e+02 Score=22.88 Aligned_cols=15 Identities=20% Similarity=0.315 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHhhH
Q 028133 88 FLVLMFALDKIYYSP 102 (213)
Q Consensus 88 FlIL~~iL~kfl~kp 102 (213)
|+.++||+.+.=-+.
T Consensus 12 ~~~i~yf~iRPQkKr 26 (113)
T PRK06531 12 MLGLIFFMQRQQKKQ 26 (113)
T ss_pred HHHHHHheechHHHH
Confidence 333334445444333
No 369
>PF08598 Sds3: Sds3-like; InterPro: IPR013907 Repression of gene transcription is mediated by histone deacetylases containing repressor-co-repressor complexes, which are recruited to promoters of target genes via interactions with sequence-specific transcription factors. The co-repressor complex contains a core of at least seven proteins []. This entry represents the conserved region found in Sds3, Dep1 and BRMS1-homologue p40 proteins. ; PDB: 2XUS_A.
Probab=22.35 E-value=66 Score=26.50 Aligned_cols=65 Identities=18% Similarity=0.183 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133 124 TSEEVKQLEEQAAAVMRAARAEISAALTKMKKETQLEVEQKLAVGRKKIEAELQEALANLERQKE 188 (213)
Q Consensus 124 ~~~ea~~~~~eae~~L~~Ar~ea~~Ii~~Ak~eAe~e~e~il~~Ak~e~e~~~~~A~~~I~~e~~ 188 (213)
+...+..+.+..+..+..++..-+--++.++.+.+.++..+..+-..+....++.....+...+.
T Consensus 44 ~l~~l~~l~~~rd~~l~~a~~~~~~~l~~i~~~~~~e~~~a~~e~~~~~~~lre~l~~~l~ek~~ 108 (205)
T PF08598_consen 44 YLRRLQDLEERRDERLRVAEILREYRLESIEREYEAERQQAEQEYESEKRELRERLLEELEEKRR 108 (205)
T ss_dssp -----------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555555555555555555554444444444444444444443333
No 370
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=22.15 E-value=7.7e+02 Score=24.37 Aligned_cols=20 Identities=25% Similarity=0.285 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 028133 176 LQEALANLERQKEDTIKSLD 195 (213)
Q Consensus 176 ~~~A~~~I~~e~~~a~~eL~ 195 (213)
.+++......++.+.-++|.
T Consensus 526 l~~~~~~~~eer~ki~~ql~ 545 (581)
T KOG0995|consen 526 LDRMVATGEEERQKIAKQLF 545 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444433333
No 371
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=21.94 E-value=5.9e+02 Score=22.91 Aligned_cols=16 Identities=13% Similarity=0.194 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHHH
Q 028133 137 AVMRAARAEISAALTK 152 (213)
Q Consensus 137 ~~L~~Ar~ea~~Ii~~ 152 (213)
-+|.+.+.+++++++.
T Consensus 29 ~~L~~k~~e~e~ll~~ 44 (344)
T PF12777_consen 29 PELEEKQKEAEELLEE 44 (344)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444444444433
No 372
>KOG3654 consensus Uncharacterized CH domain protein [Cytoskeleton]
Probab=21.92 E-value=5.7e+02 Score=25.12 Aligned_cols=51 Identities=12% Similarity=0.171 Sum_probs=39.4
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133 99 YYSPLGNFMDERDNAIKEKLNSVKDTSEEVKQLEEQAAAVMRAARAEISAA 149 (213)
Q Consensus 99 l~kpI~~~Ld~R~~~I~~~l~eAe~~~~ea~~~~~eae~~L~~Ar~ea~~I 149 (213)
=-++=.++-.+|..-+...+..+++.+..-+++..|.+...++++..+++-
T Consensus 382 eqkaedema~kraallekqqrraeear~rkqqleae~e~kreearrkaeee 432 (708)
T KOG3654|consen 382 EQKAEDEMAQKRAALLEKQQRRAEEARRRKQQLEAEKEQKREEARRKAEEE 432 (708)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhh
Confidence 345677788888888888888888888777777778777777777777664
No 373
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=21.79 E-value=6.9e+02 Score=23.67 Aligned_cols=30 Identities=10% Similarity=0.057 Sum_probs=13.6
Q ss_pred CCccchHHHHHHHHHHHHHHHHHHHhhHHH
Q 028133 75 FDFNLTLPIIMVEFLVLMFALDKIYYSPLG 104 (213)
Q Consensus 75 ~~~n~tl~~~lInFlIL~~iL~kfl~kpI~ 104 (213)
+-++|.+.+.++.++++++++.++..+++.
T Consensus 154 ~~~~~~l~~~~l~~~~l~~~~~~~~~~~~~ 183 (576)
T TIGR02204 154 FITSPKLTSLVLLAVPLVLLPILLFGRRVR 183 (576)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555554444444444444444444443
No 374
>TIGR00383 corA magnesium Mg(2+) and cobalt Co(2+) transport protein (corA). The article in Microb Comp Genomics 1998;3(3):151-69 (Medline:98448512) discusses this family and suggests that some members may have functions other than Mg2+ transport.
Probab=21.67 E-value=1.7e+02 Score=25.65 Aligned_cols=18 Identities=33% Similarity=0.444 Sum_probs=11.7
Q ss_pred HHHHHHhhcCchhhhhhh
Q 028133 52 AVAVTSLAFSPPSLAAEI 69 (213)
Q Consensus 52 ~~~~~~~~~~~~a~A~e~ 69 (213)
.+.+.+++++||.+=++.
T Consensus 260 ~LTvvt~IflP~t~IaGi 277 (318)
T TIGR00383 260 ILTVVSTIFIPLTFIAGI 277 (318)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 445556678888886543
No 375
>CHL00094 dnaK heat shock protein 70
Probab=21.53 E-value=7.7e+02 Score=24.10 Aligned_cols=14 Identities=29% Similarity=0.356 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHHH
Q 028133 130 QLEEQAAAVMRAAR 143 (213)
Q Consensus 130 ~~~~eae~~L~~Ar 143 (213)
+++.+.+..+-.+|
T Consensus 529 ~~kn~le~~i~~~~ 542 (621)
T CHL00094 529 DLKNQAESLCYQAE 542 (621)
T ss_pred HHHHHhHHHHHHHH
Confidence 33334444443333
No 376
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=21.38 E-value=2e+02 Score=23.91 Aligned_cols=37 Identities=14% Similarity=0.096 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 028133 80 TLPIIMVEFLVLMFALDKIYYSPLGNFMDERDNAIKEK 117 (213)
Q Consensus 80 tl~~~lInFlIL~~iL~kfl~kpI~~~Ld~R~~~I~~~ 117 (213)
++-|-+|.+.+.+|-..| +|-.+.=.=...++..+.+
T Consensus 43 tvGWrvIa~~~~~Yg~lY-lYERLtWT~~AKER~fK~Q 79 (171)
T PF04799_consen 43 TVGWRVIAVSGSLYGGLY-LYERLTWTNKAKERAFKRQ 79 (171)
T ss_dssp --------------------------------------
T ss_pred hhhHHHHHHHHHHHHHHH-HHHHHhcCchHHHHHHHHH
Confidence 555655555554443322 3444443334444444443
No 377
>COG1193 Mismatch repair ATPase (MutS family) [DNA replication, recombination, and repair]
Probab=21.37 E-value=8.9e+02 Score=24.76 Aligned_cols=29 Identities=3% Similarity=-0.031 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133 152 KMKKETQLEVEQKLAVGRKKIEAELQEAL 180 (213)
Q Consensus 152 ~Ak~eAe~e~e~il~~Ak~e~e~~~~~A~ 180 (213)
+....+.......+.+|+.+++.+....+
T Consensus 554 ~~~~~a~~~~~~~~~~a~~e~~~~i~~~~ 582 (753)
T COG1193 554 QIVVLAHMGLPVPAEEAKVEAVDEVKFLK 582 (753)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHhh
Confidence 34444455555556666666665555555
No 378
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=21.25 E-value=5.4e+02 Score=22.18 Aligned_cols=19 Identities=5% Similarity=0.109 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 028133 161 VEQKLAVGRKKIEAELQEA 179 (213)
Q Consensus 161 ~e~il~~Ak~e~e~~~~~A 179 (213)
.+.++.+++.+-++....+
T Consensus 65 lE~iIkqa~~er~~~~~~i 83 (230)
T PF10146_consen 65 LENIIKQAESERNKRQEKI 83 (230)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4555555555555544444
No 379
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=21.17 E-value=6.6e+02 Score=23.22 Aligned_cols=22 Identities=9% Similarity=0.255 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 028133 147 SAALTKMKKETQLEVEQKLAVG 168 (213)
Q Consensus 147 ~~Ii~~Ak~eAe~e~e~il~~A 168 (213)
...+...++.++..+++-++.+
T Consensus 339 ~p~I~~lr~~~~~i~~~el~~~ 360 (417)
T TIGR01035 339 EPTIKALRSLAEIVREKELEKA 360 (417)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444443
No 380
>KOG3612 consensus PHD Zn-finger protein [General function prediction only]
Probab=21.12 E-value=8.1e+02 Score=24.19 Aligned_cols=53 Identities=11% Similarity=0.228 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133 121 VKDTSEEVKQLEEQAAAVMRAARAEISAALTKMKKETQLEVEQKLAVGRKKIE 173 (213)
Q Consensus 121 Ae~~~~ea~~~~~eae~~L~~Ar~ea~~Ii~~Ak~eAe~e~e~il~~Ak~e~e 173 (213)
.+.++.|-+..+..+...+.+-.......+++.+.+.+.+..+-+.+-.+...
T Consensus 462 t~kL~~E~e~~q~~~~~~l~~~~~~~~~em~~~r~tlE~k~~~n~~e~~kkl~ 514 (588)
T KOG3612|consen 462 TEKLRQEFEELQQTSRRELPVPLRNFELEMAEMRKTLEQKHAENIKEEIKKLA 514 (588)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666666766666666666666666666666666555444444333
No 381
>COG3190 FliO Flagellar biogenesis protein [Cell motility and secretion]
Probab=21.09 E-value=58 Score=26.04 Aligned_cols=24 Identities=25% Similarity=0.491 Sum_probs=15.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhHH
Q 028133 80 TLPIIMVEFLVLMFALDKIYYSPL 103 (213)
Q Consensus 80 tl~~~lInFlIL~~iL~kfl~kpI 103 (213)
.++..+..|+++.|+++||...|.
T Consensus 30 sL~~iL~lil~~~wl~kr~~~~~~ 53 (137)
T COG3190 30 SLILILALILFLAWLVKRLGRAPL 53 (137)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccc
Confidence 344455667777888888876554
No 382
>PF00836 Stathmin: Stathmin family; InterPro: IPR000956 Stathmin is a ubiquitous phosphorylated protein thought to act as an intracellular relay for diverse regulatory pathways [], functioning through a variety of secondary messengers. Its phosphorylation and gene expression are regulated throughout development [] and in response to extracellular signals regulating cell proliferation, differentiation and function []. Stathmin, and the related proteins SCG10 and XB3, contain a N-terminal domain (XB3 contains an additional N-terminal hydrophobic region), a 78 amino acid coiled-coil region, and a short C-terminal domain.; GO: 0035556 intracellular signal transduction; PDB: 3RYC_E 3RYH_E 3N2K_E 1Z2B_E 1SA1_E 3HKD_E 3DU7_E 3HKC_E 3HKB_E 3HKE_E ....
Probab=20.97 E-value=4.2e+02 Score=21.17 Aligned_cols=13 Identities=23% Similarity=0.501 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHH
Q 028133 113 AIKEKLNSVKDTS 125 (213)
Q Consensus 113 ~I~~~l~eAe~~~ 125 (213)
.|+..|..|++.+
T Consensus 46 eIqkKLeAAEERR 58 (140)
T PF00836_consen 46 EIQKKLEAAEERR 58 (140)
T ss_dssp CTTSHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3445555555433
No 383
>PRK10633 hypothetical protein; Provisional
Probab=20.95 E-value=1.6e+02 Score=21.34 Aligned_cols=30 Identities=10% Similarity=0.242 Sum_probs=20.7
Q ss_pred cccCCccchHHHH----HHHHHHHHHHHHHHHhh
Q 028133 72 AALFDFNLTLPII----MVEFLVLMFALDKIYYS 101 (213)
Q Consensus 72 g~l~~~n~tl~~~----lInFlIL~~iL~kfl~k 101 (213)
.+.+++...++.. -+.|.++.+++.|++|+
T Consensus 37 ~~i~GlP~WF~~sCi~~p~lfi~l~~~~Vk~vFk 70 (80)
T PRK10633 37 PGFTGLPHWFEMACLLLPLLFILLCWLMVKFIFR 70 (80)
T ss_pred CcccCCcHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3567777665542 36777888888888876
No 384
>COG2770 ResE FOG: HAMP domain [Signal transduction mechanisms]
Probab=20.92 E-value=3.1e+02 Score=19.23 Aligned_cols=33 Identities=21% Similarity=0.259 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 028133 85 MVEFLVLMFALDKIYYSPLGNFMDERDNAIKEK 117 (213)
Q Consensus 85 lInFlIL~~iL~kfl~kpI~~~Ld~R~~~I~~~ 117 (213)
++.-.++.|++.+.+..|+.+.-+-.++-..++
T Consensus 16 ~~~~~~~~~~~~~~v~~~l~~l~~~~~~~~~g~ 48 (83)
T COG2770 16 VLILAVLLLAAARRVTRPLRRLADLAQNLALGD 48 (83)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcCC
Confidence 344444557777777888877777666554444
No 385
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=20.86 E-value=3.6e+02 Score=27.24 Aligned_cols=38 Identities=16% Similarity=0.259 Sum_probs=29.0
Q ss_pred ccCCccchHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 028133 73 ALFDFNLTLPIIMVEFLVLMFALDKIYYSPLGNFMDER 110 (213)
Q Consensus 73 ~l~~~n~tl~~~lInFlIL~~iL~kfl~kpI~~~Ld~R 110 (213)
-|+-.+|.++|..+.+++++.++..++++++.+..++-
T Consensus 287 vm~~ys~~L~li~l~~~~l~~l~~~~~~~~l~~~~~~~ 324 (709)
T COG2274 287 VMFLYSWKLTLIVLAAIPLNVLITLIFQPLLRRKTRKL 324 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556788888888888888888888888887665543
No 386
>TIGR03024 arch_pef_cterm PEF-C-terminal archaeal protein sorting domain. This domain, distantly related to the PEP-Cterm domain described in model TIGR02595, is found in Methanosarcina mazei in four different proteins, as well as in other archaea such as Methanococcoides burtonii. Several proteins with this domain have their genes only a short distance from a distant homology of EpsH, a proposed integral membrane transpeptidase.
Probab=20.80 E-value=1.4e+02 Score=17.04 Aligned_cols=20 Identities=20% Similarity=0.607 Sum_probs=9.7
Q ss_pred CccchHHHHHHHHHHHHHHHH
Q 028133 76 DFNLTLPIIMVEFLVLMFALD 96 (213)
Q Consensus 76 ~~n~tl~~~lInFlIL~~iL~ 96 (213)
+|+ ++.+-++..+.+++++.
T Consensus 3 EF~-~i~l~I~all~i~~i~~ 22 (26)
T TIGR03024 3 EFS-TIALPIIALLAIIVILR 22 (26)
T ss_pred CCc-chHHHHHHHHHHHHHHh
Confidence 344 33444455555555544
No 387
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=20.75 E-value=4.2e+02 Score=20.75 Aligned_cols=11 Identities=36% Similarity=0.567 Sum_probs=4.6
Q ss_pred HHHHHHHHHHH
Q 028133 87 EFLVLMFALDK 97 (213)
Q Consensus 87 nFlIL~~iL~k 97 (213)
.|-=++|+-++
T Consensus 29 s~sD~M~vTrr 39 (126)
T PF07889_consen 29 SFSDLMFVTRR 39 (126)
T ss_pred chhHHHHHHHH
Confidence 34444444443
No 388
>PRK01371 sec-independent translocase; Provisional
Probab=20.62 E-value=3.8e+02 Score=21.37 Aligned_cols=8 Identities=13% Similarity=0.214 Sum_probs=4.5
Q ss_pred cCCccchH
Q 028133 74 LFDFNLTL 81 (213)
Q Consensus 74 l~~~n~tl 81 (213)
||++.|+-
T Consensus 1 MfgIG~~E 8 (137)
T PRK01371 1 MFGIGPGE 8 (137)
T ss_pred CCCccHHH
Confidence 46666543
No 389
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=20.59 E-value=6.2e+02 Score=22.62 Aligned_cols=54 Identities=11% Similarity=0.107 Sum_probs=38.0
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133 99 YYSPLGNFMDERDNAIKEKLNSVKDTSEEVKQLEEQAAAVMRAARAEISAALTK 152 (213)
Q Consensus 99 l~kpI~~~Ld~R~~~I~~~l~eAe~~~~ea~~~~~eae~~L~~Ar~ea~~Ii~~ 152 (213)
+..-+...|+++....+.+.....+..+.+.....+........+.+...+.+.
T Consensus 146 ll~gl~~~L~~~~~~L~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~Lk~~ 199 (325)
T PF08317_consen 146 LLEGLKEGLEENLELLQEDYAKLDKQLEQLDELLPKLRERKAELEEELENLKQL 199 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455677888888888888877777777777777776666666666666655544
No 390
>PRK11829 biofilm formation regulator HmsP; Provisional
Probab=20.59 E-value=3.9e+02 Score=25.74 Aligned_cols=27 Identities=15% Similarity=0.400 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 028133 85 MVEFLVLMFALDKIYYSPLGNFMDERD 111 (213)
Q Consensus 85 lInFlIL~~iL~kfl~kpI~~~Ld~R~ 111 (213)
++.++++.|++++++.+|+....+.-+
T Consensus 158 ll~~~~l~~~l~~~i~~PL~~l~~~~~ 184 (660)
T PRK11829 158 LVLSVSIAWCINRLIIHPLRAMAKELE 184 (660)
T ss_pred HHHHHHHHHHHHhhcCcHHHHHHHHHH
Confidence 455555566666777888866544333
No 391
>PF08269 Cache_2: Cache domain; InterPro: IPR013163 Cache is an extracellular domain that is predicted to have a role in small-molecule recognition in a wide range of proteins, including the animal dihydropyridine-sensitive voltage-gated Ca2+ channel; alpha-2delta subunit, and various bacterial chemotaxis receptors. The name Cache comes from CAlcium channels and CHEmotaxis receptors. This domain consists of an N-terminal part with three predicted strands and an alpha-helix, and a C-terminal part with a strand dyad followed by a relatively unstructured region. The N-terminal portion of the (unpermuted) Cache domain contains three predicted strands that could form a sheet analogous to that present in the core of the PAS domain structure. Cache domains are particularly widespread in bacteria, with Vibrio cholerae. The animal calcium channel alpha-2delta subunits might have acquired a part of their extracellular domains from a bacterial source []. The Cache domain appears to have arisen from the GAF-PAS fold despite their divergent functions []. This entry is composed of the type 2 Cache domain.; PDB: 2QHK_A 4EXO_A.
Probab=20.56 E-value=1.3e+02 Score=21.29 Aligned_cols=23 Identities=26% Similarity=0.437 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 028133 105 NFMDERDNAIKEKLNSVKDTSEE 127 (213)
Q Consensus 105 ~~Ld~R~~~I~~~l~eAe~~~~e 127 (213)
.++++|+..++...+.+...-..
T Consensus 3 ~~~~~~k~~l~~~v~~a~~~i~~ 25 (95)
T PF08269_consen 3 NLLEERKEQLKNVVESAISLIES 25 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677777777776666544433
No 392
>PRK00083 frr ribosome recycling factor; Reviewed
Probab=20.52 E-value=5e+02 Score=21.51 Aligned_cols=33 Identities=12% Similarity=0.201 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133 162 EQKLAVGRKKIEAELQEALANLERQKEDTIKSL 194 (213)
Q Consensus 162 e~il~~Ak~e~e~~~~~A~~~I~~e~~~a~~eL 194 (213)
+......+.+++..-.....+++.....-.++|
T Consensus 150 eD~~k~~e~eiQkltd~~i~~id~~~~~Kekei 182 (185)
T PRK00083 150 EDELKRAEDEIQKLTDKYIKKIDELLAAKEKEI 182 (185)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555666666666666666666555554444
No 393
>PHA03399 pif3 per os infectivity factor 3; Provisional
Probab=20.50 E-value=1.9e+02 Score=24.53 Aligned_cols=22 Identities=5% Similarity=0.039 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHhhHHHHHHHHH
Q 028133 89 LVLMFALDKIYYSPLGNFMDER 110 (213)
Q Consensus 89 lIL~~iL~kfl~kpI~~~Ld~R 110 (213)
+++++++..+++.-+..+..+.
T Consensus 9 livl~iv~~~~~~~~~~~~~~~ 30 (200)
T PHA03399 9 LIILLIVYYYTLKFVQQLNLND 30 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 3333333333444444444443
No 394
>PF10183 ESSS: ESSS subunit of NADH:ubiquinone oxidoreductase (complex I) ; InterPro: IPR019329 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This entry represents the ESSS subunit from mitochondrial NADH:ubiquinone oxidoreductase (complex I). It carries mitochondrial import sequences [].
Probab=20.47 E-value=1.1e+02 Score=22.99 Aligned_cols=25 Identities=24% Similarity=0.242 Sum_probs=15.2
Q ss_pred cchHHHHHHHHHHHHHHHHHHHhhH
Q 028133 78 NLTLPIIMVEFLVLMFALDKIYYSP 102 (213)
Q Consensus 78 n~tl~~~lInFlIL~~iL~kfl~kp 102 (213)
+|-.++++..++.++++...+.|+|
T Consensus 58 ~we~~~f~~~~~~~v~~~~~~~y~P 82 (105)
T PF10183_consen 58 GWELPFFFGFSGSLVFGGVFLAYKP 82 (105)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHcCC
Confidence 3455555555555666666667777
No 395
>PF07464 ApoLp-III: Apolipophorin-III precursor (apoLp-III); InterPro: IPR010009 This family consists of several insect apolipoprotein-III sequences. Exchangeable apolipoproteins constitute a functionally important family of proteins that play critical roles in lipid transport and lipoprotein metabolism. Apolipophorin III (apoLp-III) is a prototypical exchangeable apolipoprotein found in many insect species that functions in transport of diacylglycerol (DAG) from the fat body lipid storage depot to flight muscles in the adult life stage [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0005576 extracellular region; PDB: 1EQ1_A.
Probab=20.26 E-value=3.3e+02 Score=22.03 Aligned_cols=83 Identities=12% Similarity=0.212 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133 119 NSVKDTSEEVKQLEEQAAAVMRAARAEISAALTKMKKETQLEVEQKLAVGRKKIEAELQEALANLERQKEDTIKSLDSQI 198 (213)
Q Consensus 119 ~eAe~~~~ea~~~~~eae~~L~~Ar~ea~~Ii~~Ak~eAe~e~e~il~~Ak~e~e~~~~~A~~~I~~e~~~a~~eL~~ei 198 (213)
+....+...+..........+.++..+++..+.+.+...+.-.+.+... .-+.++.....+..+..-...+..+.+.-.
T Consensus 34 ~~sd~~~~~l~~~~~~l~eeik~~n~~~~e~l~~~~~kl~et~~~L~k~-~Pev~~qa~~l~e~lQ~~vq~l~~E~qk~~ 112 (155)
T PF07464_consen 34 EQSDSVAQQLQNVSSSLQEEIKDANPEAEEALKQLKTKLEETAEKLRKA-NPEVEKQANELQEKLQSAVQSLVQESQKLA 112 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTT-SSTHHHHHHHHHHHHHHHHHGGGG--SHHHHHT-SSSHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHhc-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHH
Q 028133 199 AALS 202 (213)
Q Consensus 199 ~~lA 202 (213)
.++.
T Consensus 113 k~v~ 116 (155)
T PF07464_consen 113 KEVS 116 (155)
T ss_dssp HHHH
T ss_pred HHHH
No 396
>PRK13895 conjugal transfer protein TraM; Provisional
Probab=20.15 E-value=4.7e+02 Score=21.08 Aligned_cols=27 Identities=19% Similarity=0.319 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133 152 KMKKETQLEVEQKLAVGRKKIEAELQE 178 (213)
Q Consensus 152 ~Ak~eAe~e~e~il~~Ak~e~e~~~~~ 178 (213)
++++.+++.....+...+.-.....+.
T Consensus 65 dak~KAEkiLnaaLaaSKeam~~~m~e 91 (144)
T PRK13895 65 DAKEKAERILNAALAASKEAMAKGMQE 91 (144)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 344444444444444444444444433
No 397
>PRK03625 tatE twin arginine translocase protein E; Validated
Probab=20.11 E-value=2.3e+02 Score=19.75 Aligned_cols=17 Identities=18% Similarity=0.221 Sum_probs=6.8
Q ss_pred hHHHHHHHHHHHHHHHH
Q 028133 101 SPLGNFMDERDNAIKEK 117 (213)
Q Consensus 101 kpI~~~Ld~R~~~I~~~ 117 (213)
|-+.+.+-+-.+..++.
T Consensus 26 p~lg~~lGk~i~~Fk~~ 42 (67)
T PRK03625 26 RTLGGDLGAAIKGFKKA 42 (67)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444443333444433
No 398
>PF10961 DUF2763: Protein of unknown function (DUF2763); InterPro: IPR024491 This entry represents an eukaryotic family of selenoproteins. It includes SelK, which seems to play an important role in protecting cells from endoplasmic reticulum stress-induced apoptosis [] and SelG, which may be involved in regulating the redox state of the cell [].
Probab=20.10 E-value=88 Score=23.08 Aligned_cols=14 Identities=29% Similarity=0.577 Sum_probs=9.8
Q ss_pred hHHHHHHHHHHHHH
Q 028133 80 TLPIIMVEFLVLMF 93 (213)
Q Consensus 80 tl~~~lInFlIL~~ 93 (213)
.+||-+++|+.++|
T Consensus 23 d~Fwgi~~fI~lFF 36 (91)
T PF10961_consen 23 DFFWGIINFIVLFF 36 (91)
T ss_pred HHHHHHHHHHHHHH
Confidence 46677788877764
No 399
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=20.07 E-value=6.7e+02 Score=23.98 Aligned_cols=11 Identities=27% Similarity=0.147 Sum_probs=4.0
Q ss_pred HHHHHHHhhHH
Q 028133 93 FALDKIYYSPL 103 (213)
Q Consensus 93 ~iL~kfl~kpI 103 (213)
+++.+++.+++
T Consensus 151 ~~~~~~~~~~~ 161 (569)
T PRK10789 151 AIMIKRYGDQL 161 (569)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 400
>COG4651 RosB Kef-type K+ transport system, predicted NAD-binding component [Inorganic ion transport and metabolism]
Probab=20.04 E-value=2.3e+02 Score=26.17 Aligned_cols=57 Identities=14% Similarity=0.208 Sum_probs=34.1
Q ss_pred HHHHHhhcCchhhhhhhh--hcccCCccchHHHH---HHHHHHHHHHHHHHHhhHHHHHHHH
Q 028133 53 VAVTSLAFSPPSLAAEIE--KAALFDFNLTLPII---MVEFLVLMFALDKIYYSPLGNFMDE 109 (213)
Q Consensus 53 ~~~~~~~~~~~a~A~e~~--~g~l~~~n~tl~~~---lInFlIL~~iL~kfl~kpI~~~Ld~ 109 (213)
++....++++|+.|.--+ ..+..+..+.+.|+ ++.|..++.++.+-+.|-+.+.++.
T Consensus 159 l~mVl~Lvllpa~a~~~g~~~~~~~~~~~~l~~Tl~Kv~af~alml~VgrrviPw~le~~a~ 220 (408)
T COG4651 159 LAMVLALVLLPALAGVLGQGDVGFATLLVDLGITLGKVAAFIAIMLVVGRRLIPWILERVAA 220 (408)
T ss_pred HHHHHHHHHhHHHHhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556677888885221 12222333344443 5788888888888777777665543
No 401
>KOG0579 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]
Probab=20.01 E-value=9.8e+02 Score=24.75 Aligned_cols=33 Identities=6% Similarity=0.100 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133 125 SEEVKQLEEQAAAVMRAARAEISAALTKMKKET 157 (213)
Q Consensus 125 ~~ea~~~~~eae~~L~~Ar~ea~~Ii~~Ak~eA 157 (213)
.++.......|+..+.....+-.+-|++...+-
T Consensus 829 eqE~~~kkr~~d~EmenlErqQkq~iE~~Eq~h 861 (1187)
T KOG0579|consen 829 EQEQTNKKRTSDLEMENLERQQKQEIEDTEQAH 861 (1187)
T ss_pred HHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444455555555555555444444333
Done!