Query 028133
Match_columns 213
No_of_seqs 206 out of 1123
Neff 6.5
Searched_HMMs 29240
Date Mon Mar 25 10:45:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028133.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028133hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1b9u_A Protein (ATP synthase); 98.9 1.5E-09 5E-14 65.5 3.8 34 75-108 1-34 (34)
2 1l2p_A ATP synthase B chain; a 98.5 1.1E-06 3.7E-11 59.3 9.7 59 137-195 2-60 (61)
3 2khk_A ATP synthase subunit B; 97.9 2.6E-07 8.8E-12 60.6 -3.4 50 105-154 2-51 (53)
4 1l2p_A ATP synthase B chain; a 97.9 0.00018 6.1E-09 48.2 9.7 59 126-184 2-60 (61)
5 2dm9_A V-type ATP synthase sub 97.7 4.8E-06 1.6E-10 67.2 0.5 84 128-211 12-95 (198)
6 3v6i_A V-type ATP synthase sub 97.7 0.0012 4E-08 53.5 13.6 79 129-207 9-91 (187)
7 3v6i_B V-type ATP synthase, su 97.7 0.0088 3E-07 44.1 16.7 98 103-210 7-104 (105)
8 2cly_A ATP synthase B chain, m 96.9 0.047 1.6E-06 45.5 14.9 48 83-130 58-105 (214)
9 4efa_E V-type proton ATPase su 96.8 0.035 1.2E-06 46.2 13.6 51 136-186 22-72 (233)
10 3v6i_A V-type ATP synthase sub 95.9 0.35 1.2E-05 38.6 14.5 61 123-183 14-78 (187)
11 4efa_E V-type proton ATPase su 95.5 0.38 1.3E-05 39.9 13.8 44 130-173 27-70 (233)
12 2kk7_A V-type ATP synthase sub 94.7 0.15 5.1E-06 33.0 6.9 21 160-180 22-42 (52)
13 4efa_G V-type proton ATPase su 94.6 0.23 7.7E-06 37.7 8.9 39 133-171 20-58 (119)
14 4efa_G V-type proton ATPase su 94.6 0.41 1.4E-05 36.2 10.2 59 113-171 11-69 (119)
15 2dm9_A V-type ATP synthase sub 94.1 0.0084 2.9E-07 47.8 -0.2 56 126-181 21-80 (198)
16 3v6i_B V-type ATP synthase, su 93.3 1.8 6E-05 31.8 14.3 22 132-153 15-36 (105)
17 2kk7_A V-type ATP synthase sub 93.1 0.29 9.9E-06 31.6 6.0 29 131-159 19-47 (52)
18 2k6i_A Uncharacterized protein 88.6 0.53 1.8E-05 31.0 3.9 31 129-159 22-52 (56)
19 3ghg_A Fibrinogen alpha chain; 88.3 7.8 0.00027 36.1 12.8 23 103-125 51-73 (562)
20 2oar_A Large-conductance mecha 87.8 0.79 2.7E-05 36.8 5.2 30 77-106 90-120 (174)
21 1f5n_A Interferon-induced guan 84.9 26 0.00088 33.0 14.8 71 131-201 509-579 (592)
22 2k6i_A Uncharacterized protein 84.7 1.4 4.7E-05 29.0 4.2 20 139-158 21-40 (56)
23 3ghg_A Fibrinogen alpha chain; 82.0 22 0.00077 33.1 12.7 73 103-176 58-130 (562)
24 3vkg_A Dynein heavy chain, cyt 79.8 51 0.0017 37.3 16.5 50 104-153 1912-1964(3245)
25 2o6n_A RH4B designed peptide; 78.1 7.4 0.00025 22.3 5.2 21 169-189 8-28 (35)
26 1u2m_A Histone-like protein HL 70.0 3.4 0.00011 31.2 3.2 48 160-207 64-111 (143)
27 1deq_A Fibrinogen (alpha chain 69.4 63 0.0021 28.9 14.2 32 103-134 54-85 (390)
28 2o6n_A RH4B designed peptide; 67.9 15 0.0005 21.0 5.2 25 159-183 9-33 (35)
29 2zuo_A MVP, major vault protei 67.6 99 0.0034 30.5 16.5 9 123-131 701-709 (861)
30 1ge9_A Ribosome recycling fact 65.8 41 0.0014 26.9 9.1 79 99-183 103-181 (184)
31 3cx5_D Cytochrome C1, heme pro 65.3 5.7 0.0002 33.6 4.0 26 79-104 210-235 (248)
32 4e81_A Chaperone protein DNAK; 62.8 60 0.002 26.3 9.9 45 140-184 145-189 (219)
33 4gfq_A Ribosome-recycling fact 61.3 66 0.0023 26.3 10.2 83 98-183 124-206 (209)
34 1pp9_D Cytochrome C-1, cytochr 60.9 7.7 0.00026 32.6 4.0 26 79-104 206-231 (241)
35 1dd5_A Ribosome recycling fact 59.1 67 0.0023 25.7 10.2 83 98-183 100-182 (185)
36 1ise_A Ribosome recycling fact 58.8 68 0.0023 25.6 10.0 84 97-183 99-182 (185)
37 1eh1_A Ribosome recycling fact 58.2 70 0.0024 25.6 10.3 84 97-183 100-183 (185)
38 1is1_A Ribosome recycling fact 58.1 70 0.0024 25.5 9.6 83 98-183 100-182 (185)
39 1wqg_A Ribosome recycling fact 57.8 71 0.0024 25.5 9.6 83 98-183 100-182 (185)
40 3hzq_A Large-conductance mecha 57.5 23 0.00079 26.3 5.7 28 77-105 81-109 (114)
41 2yiu_B Cytochrome C1, heme pro 56.1 6.4 0.00022 33.5 2.7 27 79-105 232-258 (263)
42 3ghg_B Fibrinogen beta chain; 54.8 1.3E+02 0.0044 27.5 13.1 35 113-147 99-133 (461)
43 4b9q_A Chaperone protein DNAK; 54.6 81 0.0028 29.3 10.3 44 140-183 533-576 (605)
44 2eqb_B RAB guanine nucleotide 52.4 63 0.0021 23.3 14.1 26 154-179 49-74 (97)
45 2qjy_B Cytochrome C1; cytochro 52.3 8.2 0.00028 33.0 2.8 26 79-104 231-256 (269)
46 1zrt_D Cytochrome C1; cytochro 51.6 8 0.00027 32.8 2.6 26 79-104 229-254 (258)
47 3lay_A Zinc resistance-associa 50.9 72 0.0025 25.2 8.0 26 120-145 68-93 (175)
48 2rdd_B UPF0092 membrane protei 48.5 18 0.00063 21.2 3.1 19 93-111 14-32 (37)
49 3oja_B Anopheles plasmodium-re 46.9 1.6E+02 0.0056 26.5 16.5 9 85-93 404-412 (597)
50 1use_A VAsp, vasodilator-stimu 46.6 50 0.0017 20.5 6.0 24 148-171 15-38 (45)
51 1use_A VAsp, vasodilator-stimu 44.1 56 0.0019 20.3 6.0 30 157-186 9-38 (45)
52 2f95_B Sensory rhodopsin II tr 39.4 11 0.00036 27.8 1.3 16 93-108 77-92 (163)
53 4ev6_A Magnesium transport pro 38.6 32 0.0011 29.4 4.5 18 52-69 281-298 (339)
54 2kho_A Heat shock protein 70; 38.2 89 0.003 29.0 7.7 18 139-156 532-549 (605)
55 3f1i_H Hepatocyte growth facto 37.3 1.1E+02 0.0039 21.9 7.5 29 114-142 67-95 (98)
56 1m1j_A Fibrinogen alpha subuni 36.6 2.5E+02 0.0086 25.7 15.1 26 103-128 52-77 (491)
57 2knc_B Integrin beta-3; transm 35.0 78 0.0027 21.7 5.2 32 81-112 13-44 (79)
58 2fic_A Bridging integrator 1; 34.5 1.8E+02 0.006 23.3 13.5 24 178-201 226-249 (251)
59 1xi4_J LCA, clathrin light cha 34.3 1.1E+02 0.0036 20.7 9.2 53 139-191 11-63 (70)
60 1m1j_B Fibrinogen beta chain; 33.1 2.8E+02 0.0097 25.2 17.8 42 108-149 99-140 (464)
61 3r2p_A Apolipoprotein A-I; amp 31.1 1.8E+02 0.0063 22.5 13.5 36 130-165 104-139 (185)
62 3lhp_S 4E10_D0_1ISEA_004_N (T9 30.7 1.7E+02 0.0058 21.9 7.1 21 158-178 95-115 (123)
63 3vkg_A Dynein heavy chain, cyt 29.1 7E+02 0.024 28.5 20.1 7 80-86 1895-1901(3245)
64 2zqm_A Prefoldin beta subunit 29.0 1.5E+02 0.0051 20.8 6.8 39 103-141 71-109 (117)
65 3mq9_A Bone marrow stromal ant 28.1 3E+02 0.01 24.0 16.5 18 103-120 371-388 (471)
66 2k9j_B Integrin beta-3; transm 27.8 98 0.0033 18.7 4.1 29 83-111 14-42 (43)
67 2j69_A Bacterial dynamin-like 27.1 4E+02 0.014 25.0 14.2 29 170-198 450-478 (695)
68 3lvh_D LCB, clathrin light cha 26.3 1.3E+02 0.0043 24.5 5.7 15 162-176 125-139 (205)
69 2l16_A SEC-independent protein 26.1 74 0.0025 21.8 3.8 7 74-80 2-8 (78)
70 1eh1_A Ribosome recycling fact 25.9 2.5E+02 0.0085 22.3 10.3 14 24-37 49-62 (185)
71 3b5x_A Lipid A export ATP-bind 23.4 3.4E+02 0.012 24.6 9.0 31 74-104 160-190 (582)
72 2iub_A CORA, divalent cation t 22.8 37 0.0013 29.4 2.1 15 53-67 306-320 (363)
73 4e17_B Catenin alpha-1; four h 21.8 1.2E+02 0.0042 18.2 3.6 27 108-137 11-37 (40)
74 1fxk_A Prefoldin; archaeal pro 21.5 2E+02 0.007 19.7 6.1 37 103-139 66-102 (107)
75 1cii_A Colicin IA; bacteriocin 21.1 4.9E+02 0.017 24.0 16.8 16 193-208 444-459 (602)
76 3gp4_A Transcriptional regulat 20.8 2.6E+02 0.0089 20.7 7.6 14 38-51 10-23 (142)
77 3ogk_Q JAZ1 incomplete degron 20.5 55 0.0019 17.2 1.6 15 102-116 4-18 (22)
78 3s84_A Apolipoprotein A-IV; fo 20.3 3.7E+02 0.013 22.3 17.6 16 106-121 34-49 (273)
79 2xz3_A Maltose ABC transporter 20.1 3.5E+02 0.012 23.5 8.0 11 52-62 277-288 (463)
No 1
>1b9u_A Protein (ATP synthase); membrane protein, hydrolase; HET: GMA; NMR {Synthetic} SCOP: j.35.1.1
Probab=98.87 E-value=1.5e-09 Score=65.53 Aligned_cols=34 Identities=18% Similarity=0.329 Sum_probs=31.8
Q ss_pred CCccchHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 028133 75 FDFNLTLPIIMVEFLVLMFALDKIYYSPLGNFMD 108 (213)
Q Consensus 75 ~~~n~tl~~~lInFlIL~~iL~kfl~kpI~~~Ld 108 (213)
|++|+|+++++++|++++++++||+|||+.+++|
T Consensus 1 m~~~~~l~~~~i~Flil~~~l~kf~~~Pi~~~l~ 34 (34)
T 1b9u_A 1 MNLNATILGQAIAFVLFVLFCMKYVWPPLMAAIE 34 (34)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHC
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 5788999999999999999999999999999874
No 2
>1l2p_A ATP synthase B chain; alpha helix, hydrolase; 1.55A {Escherichia coli} SCOP: f.23.21.1
Probab=98.51 E-value=1.1e-06 Score=59.29 Aligned_cols=59 Identities=15% Similarity=0.232 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133 137 AVMRAARAEISAALTKMKKETQLEVEQKLAVGRKKIEAELQEALANLERQKEDTIKSLD 195 (213)
Q Consensus 137 ~~L~~Ar~ea~~Ii~~Ak~eAe~e~e~il~~Ak~e~e~~~~~A~~~I~~e~~~a~~eL~ 195 (213)
..|.+|+.++..|+++++.+++..+++++.+|+.++++++..++.+|+.++..+..+|+
T Consensus 2 ~~L~~Ar~ea~~Ii~~A~~~a~~~~~e~~~~A~~ea~~i~~~A~~eie~ek~~A~~~Lr 60 (61)
T 1l2p_A 2 DQLKKAKAEAQVIIEQANKRRSQILDEAKAEAEQERTKIVAQAQAEIEAERKRAREELR 60 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 47899999999999999999999999999999999999999999999999999999886
No 3
>2khk_A ATP synthase subunit B; F1FO ATP synthase, spectroscopy, ATP synthesis, inner membrane, cell membrane, CF(0), hydrogen ION transpor transport; NMR {Escherichia coli}
Probab=97.93 E-value=2.6e-07 Score=60.57 Aligned_cols=50 Identities=16% Similarity=0.321 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133 105 NFMDERDNAIKEKLNSVKDTSEEVKQLEEQAAAVMRAARAEISAALTKMK 154 (213)
Q Consensus 105 ~~Ld~R~~~I~~~l~eAe~~~~ea~~~~~eae~~L~~Ar~ea~~Ii~~Ak 154 (213)
++|++|++.|.+++++|+..+.+++.+..+|+..|.+|+.++..|+++++
T Consensus 2 ~~l~~R~~~I~~~l~~A~~~~~ea~~~~~~~e~~l~~Ar~ea~~ii~~A~ 51 (53)
T 2khk_A 2 AAIEKRQKEIADGLASAERAHKDLDLAKASATDQLKKAKAEAQVIIEQAN 51 (53)
T ss_dssp CCSSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCCCS
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46889999999999999999999999999999999999999999887654
No 4
>1l2p_A ATP synthase B chain; alpha helix, hydrolase; 1.55A {Escherichia coli} SCOP: f.23.21.1
Probab=97.85 E-value=0.00018 Score=48.19 Aligned_cols=59 Identities=25% Similarity=0.335 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133 126 EEVKQLEEQAAAVMRAARAEISAALTKMKKETQLEVEQKLAVGRKKIEAELQEALANLE 184 (213)
Q Consensus 126 ~ea~~~~~eae~~L~~Ar~ea~~Ii~~Ak~eAe~e~e~il~~Ak~e~e~~~~~A~~~I~ 184 (213)
..+.+.+.++..++.+|+.++..++++++.+|+.+.++++..++.+++.++..+..+++
T Consensus 2 ~~L~~Ar~ea~~Ii~~A~~~a~~~~~e~~~~A~~ea~~i~~~A~~eie~ek~~A~~~Lr 60 (61)
T 1l2p_A 2 DQLKKAKAEAQVIIEQANKRRSQILDEAKAEAEQERTKIVAQAQAEIEAERKRAREELR 60 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 35778899999999999999999999999999999999999999999999999998874
No 5
>2dm9_A V-type ATP synthase subunit E; A-ATPase, structural genomics, NPPSFA, national project on P structural and functional analyses; 1.85A {Pyrococcus horikoshii} SCOP: d.81.4.1 PDB: 2dma_A 4dt0_A
Probab=97.74 E-value=4.8e-06 Score=67.21 Aligned_cols=84 Identities=17% Similarity=0.205 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133 128 VKQLEEQAAAVMRAARAEISAALTKMKKETQLEVEQKLAVGRKKIEAELQEALANLERQKEDTIKSLDSQIAALSEEIVR 207 (213)
Q Consensus 128 a~~~~~eae~~L~~Ar~ea~~Ii~~Ak~eAe~e~e~il~~Ak~e~e~~~~~A~~~I~~e~~~a~~eL~~ei~~lA~~ia~ 207 (213)
.++++.+++.++.+|+.++++|+++++++++.+.++++.+++++++.....+...+..+.......++.++.+.++..+.
T Consensus 12 l~~A~~~a~~il~eA~~~a~~i~~~a~~e~~~~~~~~~~~a~~e~~~~~~~~~s~~~~~~r~~~l~~~~ev~~~~~~~a~ 91 (198)
T 2dm9_A 12 NKEAERKIEYILNEARQQAEKIKEEARRNAEAKAEWIIRRAKTQAELEKQRIIANARLEVRRKRLAIQEEIISSVLEEVK 91 (198)
T ss_dssp ---------------------------------------------------------------------CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcc
Q 028133 208 KVLP 211 (213)
Q Consensus 208 KiL~ 211 (213)
++|.
T Consensus 92 ~~l~ 95 (198)
T 2dm9_A 92 RRLE 95 (198)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8875
No 6
>3v6i_A V-type ATP synthase subunit E; peripheral stator stalk, right handed coiled-coil, ATPase/SY ATP binding, membrane, hydrolase; 2.25A {Thermus thermophilus} PDB: 3k5b_E 3j0j_J
Probab=97.66 E-value=0.0012 Score=53.47 Aligned_cols=79 Identities=10% Similarity=0.141 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133 129 KQLEEQAAAVMRAARAEISAALTKMKKETQLEVEQKLAVGRKKIEAELQ----EALANLERQKEDTIKSLDSQIAALSEE 204 (213)
Q Consensus 129 ~~~~~eae~~L~~Ar~ea~~Ii~~Ak~eAe~e~e~il~~Ak~e~e~~~~----~A~~~I~~e~~~a~~eL~~ei~~lA~~ 204 (213)
+++.++++.++.+|+.++.+|+++++++|+...+.++.++..+.+..+. .++.+.+...-.++.++-+++.+-+..
T Consensus 9 ~eA~~~a~~I~~eA~~~a~~I~~eA~~eA~~~~~~~~~~~e~e~~~~~~r~~s~a~le~r~~~L~ar~eli~~v~~~a~~ 88 (187)
T 3v6i_A 9 QEVEAEIQALLQEAEAKAEAVKREAEEKAKALLQARERALEAQYRAALRRAESAGELLVATARTQARGEVLEEVRRRVRE 88 (187)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677888999999999999999999999999999999988888876644 444455555555555555555555444
Q ss_pred HHH
Q 028133 205 IVR 207 (213)
Q Consensus 205 ia~ 207 (213)
-..
T Consensus 89 ~L~ 91 (187)
T 3v6i_A 89 ALE 91 (187)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
No 7
>3v6i_B V-type ATP synthase, subunit (VAPC-therm); peripheral stator stalk, right handed coiled-coil, ATPase/SY ATP binding, membrane, hydrolase; 2.25A {Thermus thermophilus} PDB: 3k5b_G 3j0j_I
Probab=97.65 E-value=0.0088 Score=44.07 Aligned_cols=98 Identities=18% Similarity=0.211 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133 103 LGNFMDERDNAIKEKLNSVKDTSEEVKQLEEQAAAVMRAARAEISAALTKMKKETQLEVEQKLAVGRKKIEAELQEALAN 182 (213)
Q Consensus 103 I~~~Ld~R~~~I~~~l~eAe~~~~ea~~~~~eae~~L~~Ar~ea~~Ii~~Ak~eAe~e~e~il~~Ak~e~e~~~~~A~~~ 182 (213)
|.+-|.+|+......++++ +.+++..+..|..++..|+.++...++..-.+-......+..++.+.++..
T Consensus 7 llk~LAerE~~L~~~lE~A----------r~eA~~~v~~AEAeA~ril~eAe~~a~~l~ae~r~~~~~Et~ri~~eara~ 76 (105)
T 3v6i_B 7 LIKSLAEKEKQLLERLEAA----------KKEAEERVKRAEAEAKALLEEAEAKAKALEAQYRERERAETEALLARYRER 76 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777766666655 444444455555555555555555555555554555555555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 028133 183 LERQKEDTIKSLDSQIAALSEEIVRKVL 210 (213)
Q Consensus 183 I~~e~~~a~~eL~~ei~~lA~~ia~KiL 210 (213)
-+.+.+.....-...+..-+-.+.+.||
T Consensus 77 Aeaea~~v~~~A~~r~~~Av~~vLkeVL 104 (105)
T 3v6i_B 77 AEAEAKAVREKAMARLDEAVALVLKEVL 104 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHhhC
Confidence 4555444444444444444444444443
No 8
>2cly_A ATP synthase B chain, mitochondrial; mitochondrion, ION transport, CF(0), stator, transport, acetylation, hydrogen ION transport; 2.8A {Bos taurus} SCOP: f.52.1.1 PDB: 2wss_T*
Probab=96.85 E-value=0.047 Score=45.49 Aligned_cols=48 Identities=21% Similarity=0.284 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133 83 IIMVEFLVLMFALDKIYYSPLGNFMDERDNAIKEKLNSVKDTSEEVKQ 130 (213)
Q Consensus 83 ~~lInFlIL~~iL~kfl~kpI~~~Ld~R~~~I~~~l~eAe~~~~ea~~ 130 (213)
+.++.|+++++++.|++.+++.+++|++-++|.+.++++++..-+.-+
T Consensus 58 ~~~~~~~~~~~~~~K~~Gp~~a~~~D~~~~~i~~~ln~~r~~~i~~lk 105 (214)
T 2cly_A 58 FSAISTIGFLVYIVKKYGASVGEFADKLNEQKIAQLEEVKQASIKQIQ 105 (214)
T ss_dssp ---------------------CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356788888999999999999999999999999999998865544433
No 9
>4efa_E V-type proton ATPase subunit E; heterotrimer, peripheral stalk, vacuolar ATPase, hydrolase; 2.82A {Saccharomyces cerevisiae} PDB: 4dl0_J 2kz9_A
Probab=96.76 E-value=0.035 Score=46.22 Aligned_cols=51 Identities=14% Similarity=0.166 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133 136 AAVMRAARAEISAALTKMKKETQLEVEQKLAVGRKKIEAELQEALANLERQ 186 (213)
Q Consensus 136 e~~L~~Ar~ea~~Ii~~Ak~eAe~e~e~il~~Ak~e~e~~~~~A~~~I~~e 186 (213)
..++++|+.++++|..+|.++++.+..+++.+++..++...+....+++.+
T Consensus 22 ~fI~qEA~eKA~EI~~kAeeE~~~ek~~~v~~~~~~i~~~~ek~~kq~e~~ 72 (233)
T 4efa_E 22 AFIRKEAEEKAKEIQLKADQEYEIEKTNIVRNETNNIDGNFKSKLKKAMLS 72 (233)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555666666666655555555555555555555554444444433
No 10
>3v6i_A V-type ATP synthase subunit E; peripheral stator stalk, right handed coiled-coil, ATPase/SY ATP binding, membrane, hydrolase; 2.25A {Thermus thermophilus} PDB: 3k5b_E 3j0j_J
Probab=95.88 E-value=0.35 Score=38.65 Aligned_cols=61 Identities=16% Similarity=0.217 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Q 028133 123 DTSEEVKQLEEQAAAVMRAARAEISAALTKMKKETQLEV----EQKLAVGRKKIEAELQEALANL 183 (213)
Q Consensus 123 ~~~~ea~~~~~eae~~L~~Ar~ea~~Ii~~Ak~eAe~e~----e~il~~Ak~e~e~~~~~A~~~I 183 (213)
+...-..+++++++.++++|+.++..+.+.+..+++.+. ++++..++-+....+-.++.++
T Consensus 14 ~a~~I~~eA~~~a~~I~~eA~~eA~~~~~~~~~~~e~e~~~~~~r~~s~a~le~r~~~L~ar~el 78 (187)
T 3v6i_A 14 EIQALLQEAEAKAEAVKREAEEKAKALLQARERALEAQYRAALRRAESAGELLVATARTQARGEV 78 (187)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344456677888888899999999888887766665555 4446666666666666666555
No 11
>4efa_E V-type proton ATPase subunit E; heterotrimer, peripheral stalk, vacuolar ATPase, hydrolase; 2.82A {Saccharomyces cerevisiae} PDB: 4dl0_J 2kz9_A
Probab=95.54 E-value=0.38 Score=39.88 Aligned_cols=44 Identities=18% Similarity=0.190 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133 130 QLEEQAAAVMRAARAEISAALTKMKKETQLEVEQKLAVGRKKIE 173 (213)
Q Consensus 130 ~~~~eae~~L~~Ar~ea~~Ii~~Ak~eAe~e~e~il~~Ak~e~e 173 (213)
++.++++++..+|+.+++.+..++..+++.......++..++++
T Consensus 27 EA~eKA~EI~~kAeeE~~~ek~~~v~~~~~~i~~~~ek~~kq~e 70 (233)
T 4efa_E 27 EAEEKAKEIQLKADQEYEIEKTNIVRNETNNIDGNFKSKLKKAM 70 (233)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555544444444444444444444433333
No 12
>2kk7_A V-type ATP synthase subunit E; A1AO ATP synthase, ATP synthesis, hydrogen ION transport, ION transport, transport, hydrolase; NMR {Methanocaldococcus jannaschii}
Probab=94.68 E-value=0.15 Score=33.01 Aligned_cols=21 Identities=14% Similarity=0.156 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 028133 160 EVEQKLAVGRKKIEAELQEAL 180 (213)
Q Consensus 160 e~e~il~~Ak~e~e~~~~~A~ 180 (213)
+.++++.+|+.+++.++..++
T Consensus 22 eA~~Il~eA~~eA~~Ii~eA~ 42 (52)
T 2kk7_A 22 EANKIISEAEAEKAKILEKAK 42 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333
No 13
>4efa_G V-type proton ATPase subunit G; heterotrimer, peripheral stalk, vacuolar ATPase, hydrolase; 2.82A {Saccharomyces cerevisiae} PDB: 4dl0_K 2k88_A 2kwy_A
Probab=94.65 E-value=0.23 Score=37.66 Aligned_cols=39 Identities=18% Similarity=0.216 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133 133 EQAAAVMRAARAEISAALTKMKKETQLEVEQKLAVGRKK 171 (213)
Q Consensus 133 ~eae~~L~~Ar~ea~~Ii~~Ak~eAe~e~e~il~~Ak~e 171 (213)
.++..++.+||.....-+.+|+.+|+.+.+....+-+++
T Consensus 20 k~A~~iV~~ARk~k~~rLKqAK~EA~~EIe~yR~qkE~e 58 (119)
T 4efa_G 20 KEAHEIVSKARKYRQDKLKQAKTDAAKEIDSYKIQKDKE 58 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444433333
No 14
>4efa_G V-type proton ATPase subunit G; heterotrimer, peripheral stalk, vacuolar ATPase, hydrolase; 2.82A {Saccharomyces cerevisiae} PDB: 4dl0_K 2k88_A 2kwy_A
Probab=94.59 E-value=0.41 Score=36.22 Aligned_cols=59 Identities=14% Similarity=0.170 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133 113 AIKEKLNSVKDTSEEVKQLEEQAAAVMRAARAEISAALTKMKKETQLEVEQKLAVGRKK 171 (213)
Q Consensus 113 ~I~~~l~eAe~~~~ea~~~~~eae~~L~~Ar~ea~~Ii~~Ak~eAe~e~e~il~~Ak~e 171 (213)
.|+.-|+.=+++...+.+++..-...|.+|+.+|..-|+.-+.+-+.+......+....
T Consensus 11 GIQqLL~AEk~A~~iV~~ARk~k~~rLKqAK~EA~~EIe~yR~qkE~eFk~~e~~~~g~ 69 (119)
T 4efa_G 11 GIATLLQAEKEAHEIVSKARKYRQDKLKQAKTDAAKEIDSYKIQKDKELKEFEQKNAGG 69 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 45555544445666677777777788888888888888888888877777665554333
No 15
>2dm9_A V-type ATP synthase subunit E; A-ATPase, structural genomics, NPPSFA, national project on P structural and functional analyses; 1.85A {Pyrococcus horikoshii} SCOP: d.81.4.1 PDB: 2dma_A 4dt0_A
Probab=94.10 E-value=0.0084 Score=47.83 Aligned_cols=56 Identities=16% Similarity=0.199 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133 126 EEVKQLEEQAAAVMRAARAEIS----AALTKMKKETQLEVEQKLAVGRKKIEAELQEALA 181 (213)
Q Consensus 126 ~ea~~~~~eae~~L~~Ar~ea~----~Ii~~Ak~eAe~e~e~il~~Ak~e~e~~~~~A~~ 181 (213)
.-..+++++++.++.+|+.++. .++++++.+++.+....+..+..+..+.+..++.
T Consensus 21 ~il~eA~~~a~~i~~~a~~e~~~~~~~~~~~a~~e~~~~~~~~~s~~~~~~r~~~l~~~~ 80 (198)
T 2dm9_A 21 YILNEARQQAEKIKEEARRNAEAKAEWIIRRAKTQAELEKQRIIANARLEVRRKRLAIQE 80 (198)
T ss_dssp ------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555566666666665553 4444455555555555555444444443333333
No 16
>3v6i_B V-type ATP synthase, subunit (VAPC-therm); peripheral stator stalk, right handed coiled-coil, ATPase/SY ATP binding, membrane, hydrolase; 2.25A {Thermus thermophilus} PDB: 3k5b_G 3j0j_I
Probab=93.29 E-value=1.8 Score=31.81 Aligned_cols=22 Identities=23% Similarity=0.300 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 028133 132 EEQAAAVMRAARAEISAALTKM 153 (213)
Q Consensus 132 ~~eae~~L~~Ar~ea~~Ii~~A 153 (213)
..+...++.+||.++...+..+
T Consensus 15 E~~L~~~lE~Ar~eA~~~v~~A 36 (105)
T 3v6i_B 15 EKQLLERLEAAKKEAEERVKRA 36 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444433
No 17
>2kk7_A V-type ATP synthase subunit E; A1AO ATP synthase, ATP synthesis, hydrogen ION transport, ION transport, transport, hydrolase; NMR {Methanocaldococcus jannaschii}
Probab=93.13 E-value=0.29 Score=31.59 Aligned_cols=29 Identities=28% Similarity=0.346 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133 131 LEEQAAAVMRAARAEISAALTKMKKETQL 159 (213)
Q Consensus 131 ~~~eae~~L~~Ar~ea~~Ii~~Ak~eAe~ 159 (213)
.+.+++.++.+|+.++.+|+++++.+++.
T Consensus 19 A~~eA~~Il~eA~~eA~~Ii~eA~~~Ae~ 47 (52)
T 2kk7_A 19 AKAEANKIISEAEAEKAKILEKAKEEAEK 47 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555555555555554443
No 18
>2k6i_A Uncharacterized protein MJ0223; H subunit, A1AO ATP synthase, V1VO ATPase, F1FO ATP synthase, structural protein; NMR {Methanocaldococcus jannaschii}
Probab=88.64 E-value=0.53 Score=30.95 Aligned_cols=31 Identities=23% Similarity=0.203 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133 129 KQLEEQAAAVMRAARAEISAALTKMKKETQL 159 (213)
Q Consensus 129 ~~~~~eae~~L~~Ar~ea~~Ii~~Ak~eAe~ 159 (213)
.+...++..++++|..++.+|+.+|+.+|+.
T Consensus 22 KeAE~~A~~iVeeA~~ea~~ii~eAreeAke 52 (56)
T 2k6i_A 22 KLAEEQAVKEIEEAKNRAEQIKAEAIEEAKK 52 (56)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555555543
No 19
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=88.32 E-value=7.8 Score=36.13 Aligned_cols=23 Identities=17% Similarity=0.486 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 028133 103 LGNFMDERDNAIKEKLNSVKDTS 125 (213)
Q Consensus 103 I~~~Ld~R~~~I~~~l~eAe~~~ 125 (213)
|...|++-+..+...|++.++.-
T Consensus 51 LQglLdkqErDltkrINELKnqL 73 (562)
T 3ghg_A 51 MKGLIDEVNQDFTNRINKLKNSL 73 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHhhcCcHHHHHHHHHHHH
Confidence 34444444444444444443333
No 20
>2oar_A Large-conductance mechanosensitive channel; stretch activated ION channel mechanosensitive, membrane protein; 3.50A {Mycobacterium tuberculosis H37RA} SCOP: f.16.1.1
Probab=87.78 E-value=0.79 Score=36.83 Aligned_cols=30 Identities=17% Similarity=0.440 Sum_probs=25.7
Q ss_pred ccchHHH-HHHHHHHHHHHHHHHHhhHHHHH
Q 028133 77 FNLTLPI-IMVEFLVLMFALDKIYYSPLGNF 106 (213)
Q Consensus 77 ~n~tl~~-~lInFlIL~~iL~kfl~kpI~~~ 106 (213)
+++..|+ .+|||+|+.+++|.++.+|+.+.
T Consensus 90 i~yG~Fi~avInFlIIA~vIYFliVk~iNkl 120 (174)
T 2oar_A 90 IDLNVLLSAAINFFLIAFAVYFLVVLPYNTL 120 (174)
T ss_dssp ECHHHHHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred eeHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666676 59999999999999999999886
No 21
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=84.88 E-value=26 Score=33.01 Aligned_cols=71 Identities=14% Similarity=0.215 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133 131 LEEQAAAVMRAARAEISAALTKMKKETQLEVEQKLAVGRKKIEAELQEALANLERQKEDTIKSLDSQIAAL 201 (213)
Q Consensus 131 ~~~eae~~L~~Ar~ea~~Ii~~Ak~eAe~e~e~il~~Ak~e~e~~~~~A~~~I~~e~~~a~~eL~~ei~~l 201 (213)
.+.+.+..+++=+..-++=+.+.++..+.+++.++.+-+.-++..++.-..-++..-+.-...|+.++.+|
T Consensus 509 ~~~~~~~~~~~~~~~~~e~~~ql~~kme~~~~~~~~e~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ei~~l 579 (592)
T 1f5n_A 509 MQRKNEQMMEQKERSYQEHLKQLTEKMENDRVQLLKEQERTLALKLQEQEQLLKEGFQKESRIMKNEIQDL 579 (592)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444445555555556666666666655555555555444444444444445555555554
No 22
>2k6i_A Uncharacterized protein MJ0223; H subunit, A1AO ATP synthase, V1VO ATPase, F1FO ATP synthase, structural protein; NMR {Methanocaldococcus jannaschii}
Probab=84.72 E-value=1.4 Score=28.96 Aligned_cols=20 Identities=10% Similarity=0.257 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 028133 139 MRAARAEISAALTKMKKETQ 158 (213)
Q Consensus 139 L~~Ar~ea~~Ii~~Ak~eAe 158 (213)
+.+|..++.+++++|.++++
T Consensus 21 IKeAE~~A~~iVeeA~~ea~ 40 (56)
T 2k6i_A 21 VKLAEEQAVKEIEEAKNRAE 40 (56)
T ss_dssp TCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34555666666655555443
No 23
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=81.99 E-value=22 Score=33.11 Aligned_cols=73 Identities=11% Similarity=0.205 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133 103 LGNFMDERDNAIKEKLNSVKDTSEEVKQLEEQAAAVMRAARAEISAALTKMKKETQLEVEQKLAVGRKKIEAEL 176 (213)
Q Consensus 103 I~~~Ld~R~~~I~~~l~eAe~~~~ea~~~~~eae~~L~~Ar~ea~~Ii~~Ak~eAe~e~e~il~~Ak~e~e~~~ 176 (213)
...-+.+|-++|++.+++.++...++.......-..|++-.....+.-+ ...+.-.+.++-+...+.+++..+
T Consensus 58 qErDltkrINELKnqLEdlsKnsKdseqy~k~~~E~Lr~rq~q~~dNdN-tynE~S~ELRRrIqyLKekVdnQl 130 (562)
T 3ghg_A 58 VNQDFTNRINKLKNSLFEYQKNNKDSHSLTTNIMEILRGDFSSANNRDN-TYNRVSEDLRSRIEVLKRKVIEKV 130 (562)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTSSHHHHHHHHHH-HHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred hcCcHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHhhhccch-hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455677777788888888777777776655555555444333332222 333333333444444444444433
No 24
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=79.76 E-value=51 Score=37.33 Aligned_cols=50 Identities=14% Similarity=0.232 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133 104 GNFMDERDNAIKEKLNSVKDTSE---EVKQLEEQAAAVMRAARAEISAALTKM 153 (213)
Q Consensus 104 ~~~Ld~R~~~I~~~l~eAe~~~~---ea~~~~~eae~~L~~Ar~ea~~Ii~~A 153 (213)
.+-+.++.++.+..++...+..+ +.++..++.+.+|++...++++++.+.
T Consensus 1912 ~~el~~~~~rl~~GL~KL~et~~~V~~l~~~L~~~~~~L~~k~~ea~~~l~~i 1964 (3245)
T 3vkg_A 1912 RDQLEEEQLHLNIGLKKLRDTEAQVKDLQVSLAQKNRELDVKNEQANQKLKQM 1964 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555556655444444443 344444445556777777777666554
No 25
>2o6n_A RH4B designed peptide; right-handed, tetramer, de novo protein; HET: CGU; 1.10A {Synthetic} SCOP: k.17.1.1 PDB: 1tgg_A*
Probab=78.09 E-value=7.4 Score=22.28 Aligned_cols=21 Identities=14% Similarity=0.232 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 028133 169 RKKIEAELQEALANLERQKED 189 (213)
Q Consensus 169 k~e~e~~~~~A~~~I~~e~~~ 189 (213)
++++.-.+..++++|-.+..+
T Consensus 8 kkeiaylikkakeeileeikk 28 (35)
T 2o6n_A 8 KKEIAYLIKKAKEEILEEIKK 28 (35)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333
No 26
>1u2m_A Histone-like protein HLP-1; coiled coil, chaperone; 2.30A {Escherichia coli} SCOP: f.48.1.1 PDB: 1sg2_A
Probab=69.97 E-value=3.4 Score=31.21 Aligned_cols=48 Identities=13% Similarity=0.216 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133 160 EVEQKLAVGRKKIEAELQEALANLERQKEDTIKSLDSQIAALSEEIVR 207 (213)
Q Consensus 160 e~e~il~~Ak~e~e~~~~~A~~~I~~e~~~a~~eL~~ei~~lA~~ia~ 207 (213)
.++.-+..-..+..+.......++.....+....+...+......++.
T Consensus 64 ~~~~el~~~~~~~q~~~~~~~~~l~~~~~~~~~~i~~~i~~ai~~vak 111 (143)
T 1u2m_A 64 KLEKDVMAQRQTFAQKAQAFEQDRARRSNEERGKLVTRIQTAVKSVAN 111 (143)
T ss_dssp -----------------------CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555566666666677777777777777777777777666664
No 27
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=69.38 E-value=63 Score=28.88 Aligned_cols=32 Identities=16% Similarity=0.371 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133 103 LGNFMDERDNAIKEKLNSVKDTSEEVKQLEEQ 134 (213)
Q Consensus 103 I~~~Ld~R~~~I~~~l~eAe~~~~ea~~~~~e 134 (213)
+...|++-++.+...+++..+......+...+
T Consensus 54 Lqg~Ldk~er~~~~rIe~L~~~L~~~s~s~~~ 85 (390)
T 1deq_A 54 MKGLIDEVDQDFTSRINKLRDSLFNYQKNSKD 85 (390)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhH
Confidence 45555555555555555544444444333333
No 28
>2o6n_A RH4B designed peptide; right-handed, tetramer, de novo protein; HET: CGU; 1.10A {Synthetic} SCOP: k.17.1.1 PDB: 1tgg_A*
Probab=67.92 E-value=15 Score=21.03 Aligned_cols=25 Identities=16% Similarity=0.284 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133 159 LEVEQKLAVGRKKIEAELQEALANL 183 (213)
Q Consensus 159 ~e~e~il~~Ak~e~e~~~~~A~~~I 183 (213)
.+..-.+..+++++-.++..++++|
T Consensus 9 keiaylikkakeeileeikkakqei 33 (35)
T 2o6n_A 9 KEIAYLIKKAKEEILEEIKKAKQEI 33 (35)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444455555555555554443
No 29
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A
Probab=67.62 E-value=99 Score=30.48 Aligned_cols=9 Identities=22% Similarity=0.412 Sum_probs=3.3
Q ss_pred HHHHHHHHH
Q 028133 123 DTSEEVKQL 131 (213)
Q Consensus 123 ~~~~ea~~~ 131 (213)
+.+.++-++
T Consensus 701 ~~r~~Llel 709 (861)
T 2zuo_A 701 KARKELLEL 709 (861)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 30
>1ge9_A Ribosome recycling factor; three-helix bundle; NMR {Aquifex aeolicus} SCOP: d.67.3.1
Probab=65.80 E-value=41 Score=26.89 Aligned_cols=79 Identities=10% Similarity=0.151 Sum_probs=43.2
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133 99 YYSPLGNFMDERDNAIKEKLNSVKDTSEEVKQLEEQAAAVMRAARAEISAALTKMKKETQLEVEQKLAVGRKKIEAELQE 178 (213)
Q Consensus 99 l~kpI~~~Ld~R~~~I~~~l~eAe~~~~ea~~~~~eae~~L~~Ar~ea~~Ii~~Ak~eAe~e~e~il~~Ak~e~e~~~~~ 178 (213)
.+||+.. +.|++.++..-..+++.+-.+...+.++...+.... . +-++-...++.+.+.+-++.-++++...+.
T Consensus 103 ~iP~lTe--ErRkelvK~~k~~~E~aKvaiRniRrda~~~lKk~~---k-iseD~~k~~e~~iQkltd~~i~~id~~~~~ 176 (184)
T 1ge9_A 103 TLPPLTE--ERRRELVRLLHKITEEARVRVRNVRREAKEMIEELE---G-ISEDEKKRALERLQKLTDKYIDEINKLMEA 176 (184)
T ss_dssp ECCCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHST---T-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eCCCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---C-CChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566554 445555555555556666555555555555555543 1 334445555556666666666666665555
Q ss_pred HHHHH
Q 028133 179 ALANL 183 (213)
Q Consensus 179 A~~~I 183 (213)
.+.+|
T Consensus 177 KEkEi 181 (184)
T 1ge9_A 177 KEKEI 181 (184)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55544
No 31
>3cx5_D Cytochrome C1, heme protein, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: a.3.1.3 f.23.11.1 PDB: 1kyo_D* 2ibz_D* 3cxh_D* 1kb9_D* 1p84_D* 1ezv_D*
Probab=65.27 E-value=5.7 Score=33.56 Aligned_cols=26 Identities=19% Similarity=0.316 Sum_probs=21.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHhhHHH
Q 028133 79 LTLPIIMVEFLVLMFALDKIYYSPLG 104 (213)
Q Consensus 79 ~tl~~~lInFlIL~~iL~kfl~kpI~ 104 (213)
+.++++++.|++|.|+++|.+|++|.
T Consensus 210 ~~vl~fL~il~~l~y~~kr~~W~~vk 235 (248)
T 3cx5_D 210 LKTVIILSSLYLLSIWVKKFKWAGIK 235 (248)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcc
Confidence 34556778899999999999999986
No 32
>4e81_A Chaperone protein DNAK; chaperone; 1.90A {Escherichia coli} PDB: 3dpp_A* 3dpq_A* 3qnj_A 3dpo_A 1dkz_A 1dky_A 1dkx_A 1bpr_A 2bpr_A 1dg4_A
Probab=62.84 E-value=60 Score=26.28 Aligned_cols=45 Identities=18% Similarity=0.157 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133 140 RAARAEISAALTKMKKETQLEVEQKLAVGRKKIEAELQEALANLE 184 (213)
Q Consensus 140 ~~Ar~ea~~Ii~~Ak~eAe~e~e~il~~Ak~e~e~~~~~A~~~I~ 184 (213)
.+++.+++..+..++...+...+.+-.+-+..++..+...+.-+.
T Consensus 145 ~e~kn~le~~i~~~~~~l~~~~~~l~~~~k~~i~~~l~~~~~~L~ 189 (219)
T 4e81_A 145 VQTRNQGDHLLHSTRKQVEEAGDKLPADDKTAIESALTALETALK 189 (219)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhCCHHHHHHHHHHHHHHHHHHh
Confidence 344444444554444443321112223334444444444444443
No 33
>4gfq_A Ribosome-recycling factor; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.65A {Bacillus anthracis}
Probab=61.35 E-value=66 Score=26.28 Aligned_cols=83 Identities=7% Similarity=0.111 Sum_probs=38.6
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133 98 IYYSPLGNFMDERDNAIKEKLNSVKDTSEEVKQLEEQAAAVMRAARAEISAALTKMKKETQLEVEQKLAVGRKKIEAELQ 177 (213)
Q Consensus 98 fl~kpI~~~Ld~R~~~I~~~l~eAe~~~~ea~~~~~eae~~L~~Ar~ea~~Ii~~Ak~eAe~e~e~il~~Ak~e~e~~~~ 177 (213)
..+||+.. +.|++-++..-..+++.+-.+...+.++...++...... +|-++-...++.+.+.+-++.-++++...+
T Consensus 124 i~iP~LTe--ErRkelvK~ak~~~E~aKvaIRniRrda~~~lKk~~K~~-~isEDe~k~~e~eiQklTd~~i~~iD~~l~ 200 (209)
T 4gfq_A 124 IAFPALTE--ERRRDLVKVVKKYAEEAKVAVRNVRRDGNDDLKKLEKAG-EITEDDLRGYTEDIQKETDKYIAKVDEIAK 200 (209)
T ss_dssp EECCBCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-SSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeCCCccH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555543 344444444444555555555555555555444443321 122233334444555555555555555555
Q ss_pred HHHHHH
Q 028133 178 EALANL 183 (213)
Q Consensus 178 ~A~~~I 183 (213)
.-+.+|
T Consensus 201 ~KEkEi 206 (209)
T 4gfq_A 201 NKEKEI 206 (209)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 444443
No 34
>1pp9_D Cytochrome C-1, cytochrome C1, heme protein, mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: a.3.1.3 f.23.11.1 PDB: 1bgy_D* 1be3_D* 1l0n_D* 1ntk_D* 1ntm_D* 1ntz_D* 1nu1_D* 1l0l_D* 1ppj_D* 1sqb_D* 1sqp_D* 1sqq_D* 1sqv_D* 1sqx_D* 2a06_D* 2fyu_D* 2ybb_D* 1bcc_D* 2bcc_D* 3bcc_D* ...
Probab=60.91 E-value=7.7 Score=32.61 Aligned_cols=26 Identities=27% Similarity=0.443 Sum_probs=21.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHhhHHH
Q 028133 79 LTLPIIMVEFLVLMFALDKIYYSPLG 104 (213)
Q Consensus 79 ~tl~~~lInFlIL~~iL~kfl~kpI~ 104 (213)
+.++++++.|.+|.|+++|.+|++|.
T Consensus 206 ~~vl~fL~il~~l~y~~kr~~W~~vk 231 (241)
T 1pp9_D 206 LKMLLMMGLLLPLVYAMKRHKWSVLK 231 (241)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 34566778889999999999999986
No 35
>1dd5_A Ribosome recycling factor; three-helix bundle, beta-alpha-beta sandwich; 2.55A {Thermotoga maritima} SCOP: d.67.3.1 PDB: 1t1m_C
Probab=59.10 E-value=67 Score=25.66 Aligned_cols=83 Identities=8% Similarity=0.142 Sum_probs=42.1
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133 98 IYYSPLGNFMDERDNAIKEKLNSVKDTSEEVKQLEEQAAAVMRAARAEISAALTKMKKETQLEVEQKLAVGRKKIEAELQ 177 (213)
Q Consensus 98 fl~kpI~~~Ld~R~~~I~~~l~eAe~~~~ea~~~~~eae~~L~~Ar~ea~~Ii~~Ak~eAe~e~e~il~~Ak~e~e~~~~ 177 (213)
..+||+.. +.|++.++..-..+++.+-.+...+.++...+....... ++-++-...++.+.+.+-++.-++++...+
T Consensus 100 i~iP~lTe--ErRkelvK~~k~~~E~aKvaiRniRrda~~~lKk~~K~~-~iseD~~k~~e~~iQkltd~~i~~id~~~~ 176 (185)
T 1dd5_A 100 LVFPSPTT--EQREKWVKKAKEIVEEGKIAIRNIRREILKKIKEDQKEG-LIPEDDAKRLENEIQKLTDEFIEKLDEVFE 176 (185)
T ss_dssp EECCCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-SSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EeCCCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC-CCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566654 445555555555555566555555555555555532211 133334444555555555555555555555
Q ss_pred HHHHHH
Q 028133 178 EALANL 183 (213)
Q Consensus 178 ~A~~~I 183 (213)
.-+.+|
T Consensus 177 ~KEkEi 182 (185)
T 1dd5_A 177 IKKEEI 182 (185)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 554444
No 36
>1ise_A Ribosome recycling factor; translation; 2.20A {Escherichia coli} SCOP: d.67.3.1 PDB: 1ek8_A* 1zn0_A 1zn1_A 2rdo_8
Probab=58.82 E-value=68 Score=25.63 Aligned_cols=84 Identities=20% Similarity=0.251 Sum_probs=42.8
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133 97 KIYYSPLGNFMDERDNAIKEKLNSVKDTSEEVKQLEEQAAAVMRAARAEISAALTKMKKETQLEVEQKLAVGRKKIEAEL 176 (213)
Q Consensus 97 kfl~kpI~~~Ld~R~~~I~~~l~eAe~~~~ea~~~~~eae~~L~~Ar~ea~~Ii~~Ak~eAe~e~e~il~~Ak~e~e~~~ 176 (213)
+..+||+.. +.|++.++..-..+++.+-.+...+.++...+....... ++-++-...++.+.+.+-++.-++++...
T Consensus 99 ri~iP~lTe--ErRkelvK~~k~~~E~aKvaiRniRrda~~~lKk~~K~~-~iseD~~k~~e~~iQkltd~~i~~id~~~ 175 (185)
T 1ise_A 99 RVPLPPLTE--ERRKDLTKIVRGEAEQARVAVRNVGRDANDKVKALLKDK-EISEDDDRRSQDDVQKLTDAAIKKIEAAL 175 (185)
T ss_dssp EEECCCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-SSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEeCCCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC-CCChhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334666654 445555555555555565555555555555555532211 13334444455555555555555555555
Q ss_pred HHHHHHH
Q 028133 177 QEALANL 183 (213)
Q Consensus 177 ~~A~~~I 183 (213)
+.-+.+|
T Consensus 176 ~~KEkEi 182 (185)
T 1ise_A 176 ADKEAEL 182 (185)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555444
No 37
>1eh1_A Ribosome recycling factor; translation, hinge variability; 2.60A {Thermus thermophilus} SCOP: d.67.3.1 PDB: 2qbe_6 2qbg_6 2qbi_6* 2qbk_6* 2v46_Y* 2v48_Y* 2z4l_6* 2z4n_6* 3j0d_J 3j0e_G
Probab=58.20 E-value=70 Score=25.56 Aligned_cols=84 Identities=11% Similarity=0.169 Sum_probs=42.3
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133 97 KIYYSPLGNFMDERDNAIKEKLNSVKDTSEEVKQLEEQAAAVMRAARAEISAALTKMKKETQLEVEQKLAVGRKKIEAEL 176 (213)
Q Consensus 97 kfl~kpI~~~Ld~R~~~I~~~l~eAe~~~~ea~~~~~eae~~L~~Ar~ea~~Ii~~Ak~eAe~e~e~il~~Ak~e~e~~~ 176 (213)
++.+||+.. +.|++.++..-..+++.+-.+...+.++...+....... ++-++-...++.+.+.+-++.-++++...
T Consensus 100 ri~iP~lTe--ErRkelvK~~k~~~E~aKvaiRniRrda~~~lKk~~K~~-~iseD~~k~~e~~iQkltd~~i~~id~~~ 176 (185)
T 1eh1_A 100 YINIPPLTE--ERRKDLVRAVRQYAEEGRVAIRNIRREALDKLKKLAKEL-HLSEDETKRAEAEIQKITDEFIAKADQLA 176 (185)
T ss_dssp EEECCCCCT--THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEeCCCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC-CCChhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334666654 445555555555555666555555555555555542211 23334444445555555555555555555
Q ss_pred HHHHHHH
Q 028133 177 QEALANL 183 (213)
Q Consensus 177 ~~A~~~I 183 (213)
+.-+.+|
T Consensus 177 ~~KEkEi 183 (185)
T 1eh1_A 177 EKKEQEI 183 (185)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5444443
No 38
>1is1_A Ribosome recycling factor; translation; 2.20A {Vibrio parahaemolyticus} SCOP: d.67.3.1 PDB: 3r8n_Y
Probab=58.15 E-value=70 Score=25.54 Aligned_cols=83 Identities=18% Similarity=0.240 Sum_probs=41.6
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133 98 IYYSPLGNFMDERDNAIKEKLNSVKDTSEEVKQLEEQAAAVMRAARAEISAALTKMKKETQLEVEQKLAVGRKKIEAELQ 177 (213)
Q Consensus 98 fl~kpI~~~Ld~R~~~I~~~l~eAe~~~~ea~~~~~eae~~L~~Ar~ea~~Ii~~Ak~eAe~e~e~il~~Ak~e~e~~~~ 177 (213)
..+||+.. +.|++.++..-..+++.+-.+...+.++...+....... ++-++-...++.+.+.+-++.-++++...+
T Consensus 100 i~iP~lTe--ErRkelvK~~k~~~E~aKvaiRniRrda~~~lKk~~K~~-~iseD~~k~~e~~iQkltd~~i~~id~~~~ 176 (185)
T 1is1_A 100 VPLPPLTE--ERRKDLVKIVRGEAEGGRVAVRNIRRDANNDLKALLKDK-EISEDEDRKAQEEIQKLTDVAVKKIDEVLA 176 (185)
T ss_dssp EECCCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EeCCCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC-CCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566654 445555554445555555555555555555555532211 123334444555555555555555555555
Q ss_pred HHHHHH
Q 028133 178 EALANL 183 (213)
Q Consensus 178 ~A~~~I 183 (213)
.-+.+|
T Consensus 177 ~KEkEi 182 (185)
T 1is1_A 177 AKEKEL 182 (185)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 554444
No 39
>1wqg_A Ribosome recycling factor; translation factor, triple-helix bundle, protein synthesis, translation; 2.15A {Mycobacterium tuberculosis} SCOP: d.67.3.1 PDB: 1wqf_A 1wqh_A
Probab=57.84 E-value=71 Score=25.51 Aligned_cols=83 Identities=12% Similarity=0.160 Sum_probs=42.1
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133 98 IYYSPLGNFMDERDNAIKEKLNSVKDTSEEVKQLEEQAAAVMRAARAEISAALTKMKKETQLEVEQKLAVGRKKIEAELQ 177 (213)
Q Consensus 98 fl~kpI~~~Ld~R~~~I~~~l~eAe~~~~ea~~~~~eae~~L~~Ar~ea~~Ii~~Ak~eAe~e~e~il~~Ak~e~e~~~~ 177 (213)
..+||+.. +.|++.++..-..+++.+-.+...+.++...+....... ++-++-...++.+.+.+-++.-++++...+
T Consensus 100 i~iP~lTe--ErRkelvK~~k~~~E~aKvaiRniRrda~~~lKk~~K~~-~iseD~~k~~e~~iQkltd~~i~~id~~~~ 176 (185)
T 1wqg_A 100 VAVPQLTE--ERRRELVKQAKHKGEEAKVSVRNIRRKAMEELHRIRKEG-EAGEDEVGRAEKDLDKTTHQYVTQIDELVK 176 (185)
T ss_dssp EECCCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EeCCCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC-CCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566654 445555555445555565555555555555555532211 123334444555555555555555555555
Q ss_pred HHHHHH
Q 028133 178 EALANL 183 (213)
Q Consensus 178 ~A~~~I 183 (213)
..+.+|
T Consensus 177 ~KEkEi 182 (185)
T 1wqg_A 177 HKEGEL 182 (185)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555444
No 40
>3hzq_A Large-conductance mechanosensitive channel; intermediate state mechanosensitive channel osmoregulation, cell membrane, ION transport; 3.82A {Staphylococcus aureus subsp}
Probab=57.53 E-value=23 Score=26.33 Aligned_cols=28 Identities=21% Similarity=0.400 Sum_probs=20.3
Q ss_pred ccchHHH-HHHHHHHHHHHHHHHHhhHHHH
Q 028133 77 FNLTLPI-IMVEFLVLMFALDKIYYSPLGN 105 (213)
Q Consensus 77 ~n~tl~~-~lInFlIL~~iL~kfl~kpI~~ 105 (213)
+++..|+ .+|||+|+-++++. +.+++.+
T Consensus 81 i~yG~Fi~avInFlIiA~viF~-~vk~~nk 109 (114)
T 3hzq_A 81 IKYGLFIQSVIDFIIIAFALFI-FVKIANT 109 (114)
T ss_dssp CCCTHHHHHHHHHHHHHHHHHH-HHHHHHH
T ss_pred eeHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 5666666 59999999998854 4556554
No 41
>2yiu_B Cytochrome C1, heme protein; oxidoreductase; HET: HEM SMA HEC; 2.70A {Paracoccus denitrificans}
Probab=56.14 E-value=6.4 Score=33.54 Aligned_cols=27 Identities=15% Similarity=0.439 Sum_probs=21.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHhhHHHH
Q 028133 79 LTLPIIMVEFLVLMFALDKIYYSPLGN 105 (213)
Q Consensus 79 ~tl~~~lInFlIL~~iL~kfl~kpI~~ 105 (213)
+.++++++.|.+|.|+++|.+|++|..
T Consensus 232 ~~vl~fL~il~~l~y~~kr~~W~~vk~ 258 (263)
T 2yiu_B 232 FVSVIFLIVLAALLYLTNKKLWQPIKH 258 (263)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 345667788899999999999999863
No 42
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*
Probab=54.85 E-value=1.3e+02 Score=27.55 Aligned_cols=35 Identities=11% Similarity=0.155 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133 113 AIKEKLNSVKDTSEEVKQLEEQAAAVMRAARAEIS 147 (213)
Q Consensus 113 ~I~~~l~eAe~~~~ea~~~~~eae~~L~~Ar~ea~ 147 (213)
.++..++++++...++.++....+..+...+....
T Consensus 99 ~Le~~l~~isn~Ts~a~~~v~~ik~s~~~~q~~~~ 133 (461)
T 3ghg_B 99 ELNNNVEAVSQTSSSSFQYMYLLKDLWQKRQKQVK 133 (461)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhccccCCCC
Confidence 34444445555555554444444444444443333
No 43
>4b9q_A Chaperone protein DNAK; HET: ATP; 2.40A {Escherichia coli} PDB: 2kho_A 1dkg_D
Probab=54.60 E-value=81 Score=29.26 Aligned_cols=44 Identities=18% Similarity=0.151 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133 140 RAARAEISAALTKMKKETQLEVEQKLAVGRKKIEAELQEALANL 183 (213)
Q Consensus 140 ~~Ar~ea~~Ii~~Ak~eAe~e~e~il~~Ak~e~e~~~~~A~~~I 183 (213)
.+++.+.+.++.+++...+...+.+-.+-++.++..+...+.-+
T Consensus 533 ~~~~n~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 576 (605)
T 4b9q_A 533 VQTRNQGDHLLHSTRKQVEEAGDKLPADDKTAIESALTALETAL 576 (605)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhCCHHHHHHHHHHHHHHHHHH
Confidence 34444444555444443332111222333344444444444444
No 44
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=52.38 E-value=63 Score=23.27 Aligned_cols=26 Identities=19% Similarity=0.088 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133 154 KKETQLEVEQKLAVGRKKIEAELQEA 179 (213)
Q Consensus 154 k~eAe~e~e~il~~Ak~e~e~~~~~A 179 (213)
+...+.+.++.-+.-=.++..+...+
T Consensus 49 ~~~ie~ElEeLTasLFeEAN~MVa~a 74 (97)
T 2eqb_B 49 ADKLNKEVEDLTASLFDEANNMVADA 74 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444555444455555555555
No 45
>2qjy_B Cytochrome C1; cytochrome B, 8 TM helixces cytochrome C1, 1 C-TERM TM helix 1 N-TERM TM helix; HET: BGL HEM SMA LOP UQ2; 2.40A {Rhodobacter sphaeroides} PDB: 2fyn_B* 2qjp_B* 2qjk_B*
Probab=52.31 E-value=8.2 Score=32.97 Aligned_cols=26 Identities=15% Similarity=0.333 Sum_probs=21.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHhhHHH
Q 028133 79 LTLPIIMVEFLVLMFALDKIYYSPLG 104 (213)
Q Consensus 79 ~tl~~~lInFlIL~~iL~kfl~kpI~ 104 (213)
+.++++++.|.+|.|+++|.+|++|.
T Consensus 231 ~~Vl~fL~il~~l~y~~kr~~W~~vk 256 (269)
T 2qjy_B 231 FTAVMFLTVLSVLLYLTNKRLWAGVK 256 (269)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 34556778888999999999999885
No 46
>1zrt_D Cytochrome C1; cytochrome BC1, membrane protein, heme protein, rieske iron sulfur protein; HET: HEM SMA HEC; 3.50A {Rhodobacter capsulatus}
Probab=51.59 E-value=8 Score=32.83 Aligned_cols=26 Identities=15% Similarity=0.372 Sum_probs=21.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHhhHHH
Q 028133 79 LTLPIIMVEFLVLMFALDKIYYSPLG 104 (213)
Q Consensus 79 ~tl~~~lInFlIL~~iL~kfl~kpI~ 104 (213)
+.++++++.|.+|.|+++|.+|++|.
T Consensus 229 ~~vl~fL~il~~l~y~~kr~~W~~vk 254 (258)
T 1zrt_D 229 LVAMVMLGLLSVMLYLTNKRLWAPYK 254 (258)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 34566788899999999999999874
No 47
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=50.91 E-value=72 Score=25.19 Aligned_cols=26 Identities=8% Similarity=0.116 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133 120 SVKDTSEEVKQLEEQAAAVMRAARAE 145 (213)
Q Consensus 120 eAe~~~~ea~~~~~eae~~L~~Ar~e 145 (213)
--++.+++++++.+++......-|.+
T Consensus 68 LT~EQq~ql~~I~~e~r~~~~~Lr~q 93 (175)
T 3lay_A 68 LTTEQQATAQKIYDDYYTQTSALRQQ 93 (175)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555555555554444433
No 48
>2rdd_B UPF0092 membrane protein YAJC; drug resistance, multidrug efflux, transporter, antiporter, novel transmembrane helix, ACRB, inner membrane; HET: AIC; 3.50A {Escherichia coli}
Probab=48.48 E-value=18 Score=21.18 Aligned_cols=19 Identities=11% Similarity=0.106 Sum_probs=9.9
Q ss_pred HHHHHHHhhHHHHHHHHHH
Q 028133 93 FALDKIYYSPLGNFMDERD 111 (213)
Q Consensus 93 ~iL~kfl~kpI~~~Ld~R~ 111 (213)
.+.+.++..|=.+--.+++
T Consensus 14 ~ifYFl~iRPQ~Kr~K~~~ 32 (37)
T 2rdd_B 14 LIFYFMILRPQQKRTKEHK 32 (37)
T ss_dssp HHHHHHTHHHHHHHHHHHT
T ss_pred HHHHHHHhhhHHHHHHHHH
Confidence 3344455667665554444
No 49
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=46.91 E-value=1.6e+02 Score=26.49 Aligned_cols=9 Identities=11% Similarity=0.552 Sum_probs=3.6
Q ss_pred HHHHHHHHH
Q 028133 85 MVEFLVLMF 93 (213)
Q Consensus 85 lInFlIL~~ 93 (213)
++.++-...
T Consensus 404 ~~~~l~~~~ 412 (597)
T 3oja_B 404 LLQYIALTS 412 (597)
T ss_dssp HHHHHHHHH
T ss_pred HHHHhhHHH
Confidence 344444333
No 50
>1use_A VAsp, vasodilator-stimulated phosphoprotein; signaling protein, null; 1.3A {Homo sapiens} SCOP: h.1.29.1 PDB: 1usd_A
Probab=46.63 E-value=50 Score=20.47 Aligned_cols=24 Identities=25% Similarity=0.180 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 028133 148 AALTKMKKETQLEVEQKLAVGRKK 171 (213)
Q Consensus 148 ~Ii~~Ak~eAe~e~e~il~~Ak~e 171 (213)
+|+.+.+.+.++.+++|++..+.+
T Consensus 15 EIL~E~RkElqK~K~EIIeAi~~E 38 (45)
T 1use_A 15 ELLEEVKKELQKVKEEIIEAFVQE 38 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444433
No 51
>1use_A VAsp, vasodilator-stimulated phosphoprotein; signaling protein, null; 1.3A {Homo sapiens} SCOP: h.1.29.1 PDB: 1usd_A
Probab=44.07 E-value=56 Score=20.27 Aligned_cols=30 Identities=13% Similarity=0.149 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133 157 TQLEVEQKLAVGRKKIEAELQEALANLERQ 186 (213)
Q Consensus 157 Ae~e~e~il~~Ak~e~e~~~~~A~~~I~~e 186 (213)
-+..+++|+.+.++|+++.++.-...+..+
T Consensus 9 le~~KqEIL~E~RkElqK~K~EIIeAi~~E 38 (45)
T 1use_A 9 LQRVKQELLEEVKKELQKVKEEIIEAFVQE 38 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555666666666655555544444443
No 52
>2f95_B Sensory rhodopsin II transducer; membrane protein complex, signal transduction, photocycle ST membrane protein; HET: BOG RET; 2.20A {Natronomonas pharaonis} SCOP: f.17.4.1
Probab=39.36 E-value=11 Score=27.76 Aligned_cols=16 Identities=13% Similarity=0.019 Sum_probs=0.0
Q ss_pred HHHHHHHhhHHHHHHH
Q 028133 93 FALDKIYYSPLGNFMD 108 (213)
Q Consensus 93 ~iL~kfl~kpI~~~Ld 108 (213)
+++.+.+.+|+.+..+
T Consensus 77 ~~~~~~i~~pl~~l~~ 92 (163)
T 2f95_B 77 ATLGGDTAASLSTLAA 92 (163)
T ss_dssp ----------------
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3445566777765433
No 53
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=38.57 E-value=32 Score=29.44 Aligned_cols=18 Identities=17% Similarity=0.324 Sum_probs=12.4
Q ss_pred HHHHHHhhcCchhhhhhh
Q 028133 52 AVAVTSLAFSPPSLAAEI 69 (213)
Q Consensus 52 ~~~~~~~~~~~~a~A~e~ 69 (213)
.+.+.+++++||.+-++.
T Consensus 281 ~LTiit~IflP~T~IaGi 298 (339)
T 4ev6_A 281 ILTMVTTIFAVPMWITGI 298 (339)
T ss_dssp HHHHHHHHSSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 345566789999997543
No 54
>2kho_A Heat shock protein 70; molecular chaperone, HSP70, peptide binding, protein folding, acetylation, ATP-binding, cell inner membrane; NMR {Escherichia coli}
Probab=38.20 E-value=89 Score=28.96 Aligned_cols=18 Identities=17% Similarity=0.226 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 028133 139 MRAARAEISAALTKMKKE 156 (213)
Q Consensus 139 L~~Ar~ea~~Ii~~Ak~e 156 (213)
+.+++.+++..+.+++..
T Consensus 532 ~~~~~n~~e~~~~~~~~~ 549 (605)
T 2kho_A 532 LVQTRNQGDHLLHSTRKQ 549 (605)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444444433
No 55
>3f1i_H Hepatocyte growth factor-regulated tyrosine kinas substrate; HGS, ESCRT, ubiquitin, MVB, endosome, membrane, metal- phosphoprotein, protein transport, transport; 2.30A {Homo sapiens}
Probab=37.34 E-value=1.1e+02 Score=21.92 Aligned_cols=29 Identities=24% Similarity=0.481 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133 114 IKEKLNSVKDTSEEVKQLEEQAAAVMRAA 142 (213)
Q Consensus 114 I~~~l~eAe~~~~ea~~~~~eae~~L~~A 142 (213)
+++.+....+++..++.++++...++...
T Consensus 67 LQDkL~qi~eAR~ALdaLR~eH~~Klrr~ 95 (98)
T 3f1i_H 67 LQDKLAQIRDARGALSALREEHREKLRRA 95 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66778888888888888888888777654
No 56
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=36.60 E-value=2.5e+02 Score=25.70 Aligned_cols=26 Identities=8% Similarity=0.437 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133 103 LGNFMDERDNAIKEKLNSVKDTSEEV 128 (213)
Q Consensus 103 I~~~Ld~R~~~I~~~l~eAe~~~~ea 128 (213)
+...|++-++.+...+++..+...+.
T Consensus 52 LqglL~kqerdv~~rI~kLkn~L~~~ 77 (491)
T 1m1j_A 52 MQGIIDDTDQNYSQRIDNIRQQLADS 77 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHhhhhHHHHHHHHHHHHHHH
Confidence 34455555555555555444443333
No 57
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=35.03 E-value=78 Score=21.66 Aligned_cols=32 Identities=9% Similarity=0.135 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 028133 81 LPIIMVEFLVLMFALDKIYYSPLGNFMDERDN 112 (213)
Q Consensus 81 l~~~lInFlIL~~iL~kfl~kpI~~~Ld~R~~ 112 (213)
++..++..++|++++--++|+-+..+-|.|+-
T Consensus 13 Iv~gvi~gilliGllllliwk~~~~i~DrrE~ 44 (79)
T 2knc_B 13 VLLSVMGAILLIGLAALLIWKLLITIHDRKEF 44 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555666666666677766665555543
No 58
>2fic_A Bridging integrator 1; BAR domain, homodimer, coiled-coils, endocytosis/exocytosis, protein complex, endocytosis-exocytosis; 1.99A {Homo sapiens} PDB: 2rmy_A 2rnd_A
Probab=34.51 E-value=1.8e+02 Score=23.29 Aligned_cols=24 Identities=13% Similarity=0.224 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 028133 178 EALANLERQKEDTIKSLDSQIAAL 201 (213)
Q Consensus 178 ~A~~~I~~e~~~a~~eL~~ei~~l 201 (213)
.++.....+..+...+|...+..+
T Consensus 226 ~~Q~~f~~~~~~~~~~L~~~l~~~ 249 (251)
T 2fic_A 226 GLEENFHKEMSKLNQNLNDVLVGL 249 (251)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344445555555555665555443
No 59
>1xi4_J LCA, clathrin light chain A; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 3iyv_J
Probab=34.33 E-value=1.1e+02 Score=20.67 Aligned_cols=53 Identities=13% Similarity=0.161 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133 139 MRAARAEISAALTKMKKETQLEVEQKLAVGRKKIEAELQEALANLERQKEDTI 191 (213)
Q Consensus 139 L~~Ar~ea~~Ii~~Ak~eAe~e~e~il~~Ak~e~e~~~~~A~~~I~~e~~~a~ 191 (213)
+.+.|.+...-|.+--.......++++.+|+++++.-...-...++.-+...+
T Consensus 11 Ir~WRE~~~~~i~erd~~~~~~k~e~~~~A~k~iddfY~~yn~k~ek~~~~nR 63 (70)
T 1xi4_J 11 IRKWREEQTERLEALDANSRKQEAEWKEKAIKELDEWYARQDEQLQKTKANNR 63 (70)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555445555556666666666666666655555555554443
No 60
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=33.06 E-value=2.8e+02 Score=25.22 Aligned_cols=42 Identities=12% Similarity=0.117 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133 108 DERDNAIKEKLNSVKDTSEEVKQLEEQAAAVMRAARAEISAA 149 (213)
Q Consensus 108 d~R~~~I~~~l~eAe~~~~ea~~~~~eae~~L~~Ar~ea~~I 149 (213)
++.-+.+++.+++.++...++.++.......+..-+.+....
T Consensus 99 ~~~LqeLe~~l~~lsn~Ts~~~~~i~~Iq~slk~~Q~Qi~en 140 (464)
T 1m1j_B 99 KPVLRDLKDRVAKFSDTSTTMYQYVNMIDNKLVKTQKQRKDN 140 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhcccccccch
Confidence 333333444444444444444444444444444444444333
No 61
>3r2p_A Apolipoprotein A-I; amphipathic alpha-helix, major protein of high density lipop (HDL), lipid binding, plasma, lipid transport; 2.20A {Homo sapiens} PDB: 1gw3_A 1gw4_A
Probab=31.13 E-value=1.8e+02 Score=22.48 Aligned_cols=36 Identities=6% Similarity=0.161 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133 130 QLEEQAAAVMRAARAEISAALTKMKKETQLEVEQKL 165 (213)
Q Consensus 130 ~~~~eae~~L~~Ar~ea~~Ii~~Ak~eAe~e~e~il 165 (213)
+........+.+.|.+..=+.++.+..+....+++.
T Consensus 104 e~~~~~~~~~e~lr~~l~Py~~el~~~~~~~~e~Lr 139 (185)
T 3r2p_A 104 DFQKKWQEEMELYRQKVEPLRAELQEGARQKLHELQ 139 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 333333444445555555555555544444444443
No 62
>3lhp_S 4E10_D0_1ISEA_004_N (T93); epitope-scaffold, immune system; 2.70A {Artificial gene} PDB: 1y69_8
Probab=30.68 E-value=1.7e+02 Score=21.89 Aligned_cols=21 Identities=33% Similarity=0.389 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 028133 158 QLEVEQKLAVGRKKIEAELQE 178 (213)
Q Consensus 158 e~e~e~il~~Ak~e~e~~~~~ 178 (213)
+.+.+.+-+..=.+++...+.
T Consensus 95 e~eIQKLTDkyIkkID~ll~~ 115 (123)
T 3lhp_S 95 LWDVQKLTDAAIKKIEAALAD 115 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333344433333
No 63
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=29.10 E-value=7e+02 Score=28.53 Aligned_cols=7 Identities=0% Similarity=-0.069 Sum_probs=2.7
Q ss_pred hHHHHHH
Q 028133 80 TLPIIMV 86 (213)
Q Consensus 80 tl~~~lI 86 (213)
+-+..+|
T Consensus 1895 ~syLeli 1901 (3245)
T 3vkg_A 1895 RHYLDFI 1901 (3245)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3344333
No 64
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=29.00 E-value=1.5e+02 Score=20.78 Aligned_cols=39 Identities=10% Similarity=0.218 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133 103 LGNFMDERDNAIKEKLNSVKDTSEEVKQLEEQAAAVMRA 141 (213)
Q Consensus 103 I~~~Ld~R~~~I~~~l~eAe~~~~ea~~~~~eae~~L~~ 141 (213)
+...+++|.+.|...+...++..........+.+..+.+
T Consensus 71 a~~~L~~~~e~ie~~i~~le~~~~~l~~~l~~lk~~l~~ 109 (117)
T 2zqm_A 71 AVAELKEKIETLEVRLNALERQEKKLNEKLKELTAQIQS 109 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778888888777777666655555555555554443
No 65
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=28.06 E-value=3e+02 Score=24.00 Aligned_cols=18 Identities=6% Similarity=0.202 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 028133 103 LGNFMDERDNAIKEKLNS 120 (213)
Q Consensus 103 I~~~Ld~R~~~I~~~l~e 120 (213)
..+.+++=.+.++..+++
T Consensus 371 ~eeal~~~~~~i~~~l~~ 388 (471)
T 3mq9_A 371 VDEALKDAQTRITAARDG 388 (471)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 345555555555555444
No 66
>2k9j_B Integrin beta-3; transmembrane complex, cell adhesion, cleavage on basic residues, disease mutation, glycoprotein, pyrrolidone carboxylic acid; NMR {Homo sapiens} PDB: 2rmz_A 2rn0_A 2l91_A
Probab=27.77 E-value=98 Score=18.69 Aligned_cols=29 Identities=10% Similarity=0.190 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 028133 83 IIMVEFLVLMFALDKIYYSPLGNFMDERD 111 (213)
Q Consensus 83 ~~lInFlIL~~iL~kfl~kpI~~~Ld~R~ 111 (213)
.-++..++++.++--.+|+-+..+-|.|+
T Consensus 14 ~gvi~~ivliGl~lLliwk~~~~i~DrrE 42 (43)
T 2k9j_B 14 LSVMGAILLIGLAALLIWKLLITIHDRKE 42 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHheehhhc
Confidence 34555566666666677777766666553
No 67
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=27.11 E-value=4e+02 Score=25.05 Aligned_cols=29 Identities=14% Similarity=0.111 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133 170 KKIEAELQEALANLERQKEDTIKSLDSQI 198 (213)
Q Consensus 170 ~e~e~~~~~A~~~I~~e~~~a~~eL~~ei 198 (213)
..++.+...+...++....+....+..++
T Consensus 450 ~~i~~~f~~w~~~~~~~~~~~~~~~~~~~ 478 (695)
T 2j69_A 450 QYITDKSAAWTLTAEKDINAAFKELSRSA 478 (695)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666666666666555554444
No 68
>3lvh_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 9.00A {Bos taurus}
Probab=26.33 E-value=1.3e+02 Score=24.52 Aligned_cols=15 Identities=13% Similarity=0.047 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHHHH
Q 028133 162 EQKLAVGRKKIEAEL 176 (213)
Q Consensus 162 e~il~~Ak~e~e~~~ 176 (213)
++.+++|+++++.--
T Consensus 125 ~E~rekAkKeLddwY 139 (205)
T 3lvh_D 125 QEWREKAKKDLEEWN 139 (205)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333444443333
No 69
>2l16_A SEC-independent protein translocase protein tatad; membrane protein, protein transport; NMR {Bacillus subtilis}
Probab=26.14 E-value=74 Score=21.80 Aligned_cols=7 Identities=0% Similarity=0.273 Sum_probs=3.5
Q ss_pred cCCccch
Q 028133 74 LFDFNLT 80 (213)
Q Consensus 74 l~~~n~t 80 (213)
||++.|+
T Consensus 2 Mf~ig~~ 8 (78)
T 2l16_A 2 FSNIGIP 8 (78)
T ss_dssp CSSSCHH
T ss_pred CCCCCHH
Confidence 3555544
No 70
>1eh1_A Ribosome recycling factor; translation, hinge variability; 2.60A {Thermus thermophilus} SCOP: d.67.3.1 PDB: 2qbe_6 2qbg_6 2qbi_6* 2qbk_6* 2v46_Y* 2v48_Y* 2z4l_6* 2z4n_6* 3j0d_J 3j0e_G
Probab=25.93 E-value=2.5e+02 Score=22.27 Aligned_cols=14 Identities=29% Similarity=0.423 Sum_probs=7.1
Q ss_pred CCCCCCCCcccchh
Q 028133 24 PKPRIQIPQIKIPQ 37 (213)
Q Consensus 24 ~~~~~~~~~~~~~~ 37 (213)
|.|=-|+.+++.|.
T Consensus 49 ~~pL~qvA~Isv~~ 62 (185)
T 1eh1_A 49 HVPLNQIATVTAPD 62 (185)
T ss_dssp EEEGGGTCEEECSS
T ss_pred CccHHHceeeecCC
Confidence 44445555555554
No 71
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=23.37 E-value=3.4e+02 Score=24.62 Aligned_cols=31 Identities=6% Similarity=0.058 Sum_probs=13.4
Q ss_pred cCCccchHHHHHHHHHHHHHHHHHHHhhHHH
Q 028133 74 LFDFNLTLPIIMVEFLVLMFALDKIYYSPLG 104 (213)
Q Consensus 74 l~~~n~tl~~~lInFlIL~~iL~kfl~kpI~ 104 (213)
++-+||.+.+.++.++.+++++.+++.+.+.
T Consensus 160 l~~~~~~l~li~l~~~~l~~~~~~~~~~~~~ 190 (582)
T 3b5x_A 160 MFWNSWQLSLVLIVVAPVVAFAISFVSKRFR 190 (582)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445665444333333444444444444433
No 72
>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A
Probab=22.77 E-value=37 Score=29.41 Aligned_cols=15 Identities=20% Similarity=0.443 Sum_probs=10.0
Q ss_pred HHHHHhhcCchhhhh
Q 028133 53 VAVTSLAFSPPSLAA 67 (213)
Q Consensus 53 ~~~~~~~~~~~a~A~ 67 (213)
+.+.+++|+||.+=+
T Consensus 306 LTiit~IflP~T~Ia 320 (363)
T 2iub_A 306 LTIIATIFMPLTFIA 320 (363)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHH
Confidence 445556788888863
No 73
>4e17_B Catenin alpha-1; four helix bundle, cell adhesion; 2.30A {Mus musculus}
Probab=21.78 E-value=1.2e+02 Score=18.19 Aligned_cols=27 Identities=15% Similarity=0.307 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133 108 DERDNAIKEKLNSVKDTSEEVKQLEEQAAA 137 (213)
Q Consensus 108 d~R~~~I~~~l~eAe~~~~ea~~~~~eae~ 137 (213)
++|+++| +.+-...++.++.+..||..
T Consensus 11 ~~rkerI---v~eCnavrqALQdLlseY~~ 37 (40)
T 4e17_B 11 DDRRERI---VAECNAVRQALQDLLSEYMG 37 (40)
T ss_dssp CHHHHHH---HHHHHHHHHHHHHHHHHHHC
T ss_pred hhHHHHH---HHHHHHHHHHHHHHHHHHhc
Confidence 4677777 45555677777888888753
No 74
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=21.47 E-value=2e+02 Score=19.72 Aligned_cols=37 Identities=11% Similarity=0.189 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028133 103 LGNFMDERDNAIKEKLNSVKDTSEEVKQLEEQAAAVM 139 (213)
Q Consensus 103 I~~~Ld~R~~~I~~~l~eAe~~~~ea~~~~~eae~~L 139 (213)
+...+++|.+.|...+...++.....+....+.+..+
T Consensus 66 ~~~~L~~~~e~i~~~i~~le~~~~~~~~~l~~lk~~l 102 (107)
T 1fxk_A 66 LTEELQEKLETLQLREKTIERQEERVMKKLQEMQVNI 102 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567778888888777776665555555555554444
No 75
>1cii_A Colicin IA; bacteriocin, ION channel formation, transmembrane protein; 3.00A {Escherichia coli} SCOP: f.1.1.1 h.4.3.1
Probab=21.09 E-value=4.9e+02 Score=24.00 Aligned_cols=16 Identities=13% Similarity=0.293 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHh
Q 028133 193 SLDSQIAALSEEIVRK 208 (213)
Q Consensus 193 eL~~ei~~lA~~ia~K 208 (213)
.+-.+...+|-++++.
T Consensus 444 kyGeKykkIAkELAe~ 459 (602)
T 1cii_A 444 KYGAKAEQLAREMAGQ 459 (602)
T ss_dssp HHCTHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHh
Confidence 3334444555555543
No 76
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=20.76 E-value=2.6e+02 Score=20.66 Aligned_cols=14 Identities=7% Similarity=0.143 Sum_probs=9.0
Q ss_pred hhhhhhhhhhhhhh
Q 028133 38 KLLKLSSSALKSLS 51 (213)
Q Consensus 38 ~~~~~~~~~~~~~~ 51 (213)
+++.++..|+|---
T Consensus 10 ~~~gvs~~tLR~Ye 23 (142)
T 3gp4_A 10 EKSGVSADTIRYYE 23 (142)
T ss_dssp HHHTSCHHHHHHHH
T ss_pred HHHCcCHHHHHHHH
Confidence 55667777776554
No 77
>3ogk_Q JAZ1 incomplete degron peptide; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana}
Probab=20.50 E-value=55 Score=17.21 Aligned_cols=15 Identities=20% Similarity=0.605 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHH
Q 028133 102 PLGNFMDERDNAIKE 116 (213)
Q Consensus 102 pI~~~Ld~R~~~I~~ 116 (213)
-+..+|++|++++..
T Consensus 4 SLqRFleKRk~R~~~ 18 (22)
T 3ogk_Q 4 SLHRFLEKRKDRVTS 18 (26)
T ss_pred hHHHHHHHHHHHhhc
Confidence 367889999987753
No 78
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}
Probab=20.32 E-value=3.7e+02 Score=22.31 Aligned_cols=16 Identities=19% Similarity=0.345 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHH
Q 028133 106 FMDERDNAIKEKLNSV 121 (213)
Q Consensus 106 ~Ld~R~~~I~~~l~eA 121 (213)
..++=...+..++++.
T Consensus 34 ~~~~l~~~l~~~le~l 49 (273)
T 3s84_A 34 HANEVSQKIGDNLREL 49 (273)
T ss_dssp GHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHH
Confidence 3344444444444443
No 79
>2xz3_A Maltose ABC transporter periplasmic protein, ENVE glycoprotein; viral protein, viral membrane fusion, hairpin, chimera; HET: MAL; 1.95A {Escherichia coli} PDB: 1mg1_A*
Probab=20.05 E-value=3.5e+02 Score=23.51 Aligned_cols=11 Identities=9% Similarity=0.063 Sum_probs=5.3
Q ss_pred HHHHH-HhhcCc
Q 028133 52 AVAVT-SLAFSP 62 (213)
Q Consensus 52 ~~~~~-~~~~~~ 62 (213)
+..|. .+++.+
T Consensus 277 A~~Fi~~~l~s~ 288 (463)
T 2xz3_A 277 AKEFLENYLLTD 288 (463)
T ss_dssp HHHHHHHTTSSH
T ss_pred HHHHHHHHhcCH
Confidence 45555 444443
Done!