BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028136
(213 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P59999|ARPC4_MOUSE Actin-related protein 2/3 complex subunit 4 OS=Mus musculus
GN=Arpc4 PE=1 SV=3
Length = 168
Score = 245 bits (625), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 114/168 (67%), Positives = 139/168 (82%)
Query: 45 MSNTLRLYLACIRNTLDAALCLQNFPCQEVERHNKPEVELKTSPELLLNPILICRNEAEK 104
M+ TLR YL+ +R TL AALCL+NF Q VERHNKPEVE+++S ELLL P+ I RNE EK
Sbjct: 1 MTATLRPYLSAVRATLQAALCLENFSSQVVERHNKPEVEVRSSKELLLQPVTISRNEKEK 60
Query: 105 CLIETSINSLRISLKVKQADELENILTKKFLRFLSMRAEAFQVLRRKPVQGYDISFLITN 164
LIE SINS+R+S+ VKQADE+E IL KF+RF+ MRAE F +LRRKPV+GYDISFLITN
Sbjct: 61 VLIEGSINSVRVSIAVKQADEIEKILCHKFMRFMMMRAENFFILRRKPVEGYDISFLITN 120
Query: 165 YHCEEMQKHKLIDFIVQFMEDIDKEISELKMSVNTRGRLVATEFLKQF 212
+H E+M KHKL+DF++ FME+IDKEISE+K+SVN R R+VA EFLK F
Sbjct: 121 FHTEQMYKHKLVDFVIHFMEEIDKEISEMKLSVNARARIVAEEFLKNF 168
>sp|P59998|ARPC4_HUMAN Actin-related protein 2/3 complex subunit 4 OS=Homo sapiens
GN=ARPC4 PE=1 SV=3
Length = 168
Score = 245 bits (625), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 114/168 (67%), Positives = 139/168 (82%)
Query: 45 MSNTLRLYLACIRNTLDAALCLQNFPCQEVERHNKPEVELKTSPELLLNPILICRNEAEK 104
M+ TLR YL+ +R TL AALCL+NF Q VERHNKPEVE+++S ELLL P+ I RNE EK
Sbjct: 1 MTATLRPYLSAVRATLQAALCLENFSSQVVERHNKPEVEVRSSKELLLQPVTISRNEKEK 60
Query: 105 CLIETSINSLRISLKVKQADELENILTKKFLRFLSMRAEAFQVLRRKPVQGYDISFLITN 164
LIE SINS+R+S+ VKQADE+E IL KF+RF+ MRAE F +LRRKPV+GYDISFLITN
Sbjct: 61 VLIEGSINSVRVSIAVKQADEIEKILCHKFMRFMMMRAENFFILRRKPVEGYDISFLITN 120
Query: 165 YHCEEMQKHKLIDFIVQFMEDIDKEISELKMSVNTRGRLVATEFLKQF 212
+H E+M KHKL+DF++ FME+IDKEISE+K+SVN R R+VA EFLK F
Sbjct: 121 FHTEQMYKHKLVDFVIHFMEEIDKEISEMKLSVNARARIVAEEFLKNF 168
>sp|Q148J6|ARPC4_BOVIN Actin-related protein 2/3 complex subunit 4 OS=Bos taurus GN=ARPC4
PE=1 SV=3
Length = 168
Score = 245 bits (625), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 114/168 (67%), Positives = 139/168 (82%)
Query: 45 MSNTLRLYLACIRNTLDAALCLQNFPCQEVERHNKPEVELKTSPELLLNPILICRNEAEK 104
M+ TLR YL+ +R TL AALCL+NF Q VERHNKPEVE+++S ELLL P+ I RNE EK
Sbjct: 1 MTATLRPYLSAVRATLQAALCLENFSSQVVERHNKPEVEVRSSKELLLQPVTISRNEKEK 60
Query: 105 CLIETSINSLRISLKVKQADELENILTKKFLRFLSMRAEAFQVLRRKPVQGYDISFLITN 164
LIE SINS+R+S+ VKQADE+E IL KF+RF+ MRAE F +LRRKPV+GYDISFLITN
Sbjct: 61 VLIEGSINSVRVSIAVKQADEIEKILCHKFMRFMMMRAENFFILRRKPVEGYDISFLITN 120
Query: 165 YHCEEMQKHKLIDFIVQFMEDIDKEISELKMSVNTRGRLVATEFLKQF 212
+H E+M KHKL+DF++ FME+IDKEISE+K+SVN R R+VA EFLK F
Sbjct: 121 FHTEQMYKHKLVDFVIHFMEEIDKEISEMKLSVNARARIVAEEFLKNF 168
>sp|O96625|ARPC4_DICDI Actin-related protein 2/3 complex subunit 4 OS=Dictyostelium
discoideum GN=arcD PE=1 SV=1
Length = 169
Score = 244 bits (623), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 112/168 (66%), Positives = 142/168 (84%)
Query: 45 MSNTLRLYLACIRNTLDAALCLQNFPCQEVERHNKPEVELKTSPELLLNPILICRNEAEK 104
MS YL CIRNTL A++CLQNF Q VERHNKPEVE+KTS EL+LNP++I RN+ E+
Sbjct: 1 MSTAQVPYLNCIRNTLTASMCLQNFGSQIVERHNKPEVEVKTSKELVLNPVIIARNKNER 60
Query: 105 CLIETSINSLRISLKVKQADELENILTKKFLRFLSMRAEAFQVLRRKPVQGYDISFLITN 164
LIETSINS+RIS+ +K++DE++ IL KKF+RFL RAE F +LRRKPV+GYDISFL+TN
Sbjct: 61 VLIETSINSIRISVSIKKSDEVDVILAKKFVRFLQQRAENFIILRRKPVEGYDISFLVTN 120
Query: 165 YHCEEMQKHKLIDFIVQFMEDIDKEISELKMSVNTRGRLVATEFLKQF 212
+H E M KHKL+DFI+QFMEDID+EIS+LK+++N RGR+VA+E+LK F
Sbjct: 121 FHTENMFKHKLVDFIIQFMEDIDREISDLKLTLNARGRIVASEYLKNF 168
>sp|Q92352|ARPC4_SCHPO Actin-related protein 2/3 complex subunit 4 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=arc4 PE=1 SV=1
Length = 168
Score = 223 bits (567), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 102/168 (60%), Positives = 136/168 (80%)
Query: 45 MSNTLRLYLACIRNTLDAALCLQNFPCQEVERHNKPEVELKTSPELLLNPILICRNEAEK 104
MSNTLR YL +R+TL A+L L+ F + VER ++PEVE+ SPE+LL P+++ RNE E+
Sbjct: 1 MSNTLRPYLNAVRSTLTASLALEEFSSEIVERQSQPEVEVGRSPEILLKPLVVSRNEQEQ 60
Query: 105 CLIETSINSLRISLKVKQADELENILTKKFLRFLSMRAEAFQVLRRKPVQGYDISFLITN 164
CLIE+S+NS+R S+++KQ DE+E IL +KF++FL RAE+F +LRRKPVQGYDISFLITN
Sbjct: 61 CLIESSVNSVRFSIRIKQVDEIERILVRKFMQFLMGRAESFFILRRKPVQGYDISFLITN 120
Query: 165 YHCEEMQKHKLIDFIVQFMEDIDKEISELKMSVNTRGRLVATEFLKQF 212
YH EEM KHKL+DFI++FME++D EISE+K+ +N R RLVA +L F
Sbjct: 121 YHTEEMLKHKLVDFIIEFMEEVDAEISEMKLFLNGRARLVAETYLSCF 168
>sp|P33204|ARPC4_YEAST Actin-related protein 2/3 complex subunit 4 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=ARC19 PE=1
SV=2
Length = 171
Score = 216 bits (551), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 105/170 (61%), Positives = 129/170 (75%), Gaps = 1/170 (0%)
Query: 45 MSNTLRLYLACIRNTLDAALCLQNFPCQEVERHNKPEVEL-KTSPELLLNPILICRNEAE 103
MS +LR YL +R +L+AAL L NF QEVERHN+PEVE+ TS ELLL P+ I RNE E
Sbjct: 1 MSQSLRPYLTAVRYSLEAALTLSNFSSQEVERHNRPEVEVPNTSAELLLQPMHISRNENE 60
Query: 104 KCLIETSINSLRISLKVKQADELENILTKKFLRFLSMRAEAFQVLRRKPVQGYDISFLIT 163
+ LIE S+NS+R+SL VKQADE+E IL KF RFL RAEAF +LRR P+ GY ISFLIT
Sbjct: 61 QVLIEPSVNSVRMSLMVKQADEIEQILVHKFTRFLEQRAEAFYILRRVPIPGYSISFLIT 120
Query: 164 NYHCEEMQKHKLIDFIVQFMEDIDKEISELKMSVNTRGRLVATEFLKQFV 213
N H E M+ KL+DFI++FMED+DKEISE+K+ +N R R VA +L +FV
Sbjct: 121 NKHTESMKTGKLVDFIIEFMEDVDKEISEIKLFLNARARFVAEAYLDEFV 170
>sp|P58798|ARPC4_CAEEL Probable actin-related protein 2/3 complex subunit 4
OS=Caenorhabditis elegans GN=arx-6 PE=3 SV=1
Length = 169
Score = 216 bits (550), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 102/168 (60%), Positives = 133/168 (79%)
Query: 45 MSNTLRLYLACIRNTLDAALCLQNFPCQEVERHNKPEVELKTSPELLLNPILICRNEAEK 104
MS TL+ YL +R+TL AALCL+ F Q VERHNKPEVE++TS ELL+ P+++ RN+ E+
Sbjct: 1 MSATLQPYLEAVRHTLQAALCLEQFSSQVVERHNKPEVEVQTSKELLMTPVVVARNKQER 60
Query: 105 CLIETSINSLRISLKVKQADELENILTKKFLRFLSMRAEAFQVLRRKPVQGYDISFLITN 164
LIE S+NS+RIS+ +KQ+DE+E IL KF RF+ RA+ F VLRRKP+ GYDISFLIT
Sbjct: 61 VLIEPSVNSVRISIAIKQSDEIEKILCHKFTRFMCQRADNFFVLRRKPLPGYDISFLITA 120
Query: 165 YHCEEMQKHKLIDFIVQFMEDIDKEISELKMSVNTRGRLVATEFLKQF 212
H E M KHKL+DF++ FM++IDKEISE+K+S+N R R+ A EFLK+F
Sbjct: 121 SHTEAMFKHKLVDFLLHFMQEIDKEISEMKLSLNARARVSAEEFLKRF 168
>sp|O28305|HEM2_ARCFU Delta-aminolevulinic acid dehydratase OS=Archaeoglobus fulgidus
(strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC
100126) GN=hemB PE=3 SV=1
Length = 322
Score = 30.4 bits (67), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 83 ELKTSPELLLNPILICRNEAEKCLIETSINSLRISLKVKQADELENILTKKFLRFL 138
E + SPE L+ PI + N EK IE+ + RI L++ E+E L K F+
Sbjct: 23 EARLSPENLITPIFVDENIKEKKPIESMPDYFRIPLEMVDK-EVEECLEKDLRSFI 77
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.134 0.376
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 64,770,072
Number of Sequences: 539616
Number of extensions: 2308287
Number of successful extensions: 8042
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 8032
Number of HSP's gapped (non-prelim): 18
length of query: 213
length of database: 191,569,459
effective HSP length: 113
effective length of query: 100
effective length of database: 130,592,851
effective search space: 13059285100
effective search space used: 13059285100
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 59 (27.3 bits)