Query 028136
Match_columns 213
No_of_seqs 91 out of 93
Neff 2.9
Searched_HMMs 46136
Date Fri Mar 29 06:48:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028136.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028136hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00278 ARP2/3 complex subuni 100.0 4E-100 1E-104 638.4 15.0 169 45-213 1-173 (174)
2 PF05856 ARPC4: ARP2/3 complex 100.0 5E-100 1E-104 636.5 13.4 168 45-212 1-170 (170)
3 KOG1876 Actin-related protein 100.0 3.5E-93 7.6E-98 589.8 12.3 168 45-212 1-168 (168)
4 PF04045 P34-Arc: Arp2/3 compl 83.3 30 0.00064 31.2 12.0 121 92-212 91-233 (241)
5 KOG2826 Actin-related protein 69.7 14 0.0003 34.4 6.2 65 114-196 55-119 (301)
6 PF14506 CppA_N: CppA N-termin 65.3 6.1 0.00013 32.9 2.7 36 98-133 38-84 (125)
7 PF04045 P34-Arc: Arp2/3 compl 46.9 11 0.00024 33.8 1.5 42 116-167 2-48 (241)
8 PTZ00040 translation initiatio 44.9 35 0.00077 30.6 4.3 37 112-148 183-221 (233)
9 KOG2826 Actin-related protein 37.9 1.6E+02 0.0034 27.7 7.4 128 69-212 131-278 (301)
10 PF15382 DUF4609: Domain of un 32.9 43 0.00093 25.5 2.5 34 79-112 2-36 (70)
11 PF14065 DUF4255: Protein of u 27.2 57 0.0012 26.3 2.5 73 109-186 36-108 (179)
12 PF04592 SelP_N: Selenoprotein 24.7 33 0.00072 31.2 0.8 14 154-167 58-72 (238)
13 PF01397 Terpene_synth: Terpen 23.8 17 0.00036 31.1 -1.2 42 115-159 58-108 (183)
14 PF08581 Tup_N: Tup N-terminal 22.0 1.4E+02 0.0029 22.8 3.5 34 169-202 42-78 (79)
15 cd00487 Pep_deformylase Polype 21.4 77 0.0017 25.7 2.3 62 47-111 21-90 (141)
No 1
>PTZ00278 ARP2/3 complex subunit; Provisional
Probab=100.00 E-value=4.4e-100 Score=638.42 Aligned_cols=169 Identities=64% Similarity=1.044 Sum_probs=167.9
Q ss_pred hhhhhhhHHHHHHHHHhHhhhccCCCchhhhhcCcCcccc----cCCccccccceEEeecCCceEEEecCcceeEEEeee
Q 028136 45 MSNTLRLYLACIRNTLDAALCLQNFPCQEVERHNKPEVEL----KTSPELLLNPILICRNEAEKCLIETSINSLRISLKV 120 (213)
Q Consensus 45 Ma~tl~pYl~~VR~TL~aALCL~nF~Sq~VErhNkPEVE~----~~s~elLl~Pl~IsRne~EkcLIE~SINSvRVSi~i 120 (213)
||+|+||||+|||+||+|||||+|||||+||||||||||+ ++|+|||++|++|+|||+|+||||||||||||||||
T Consensus 1 Ms~~l~pYl~aVr~tL~aAlcL~nF~Sq~vErhnkPEVE~~~~~~ts~elLl~pl~I~Rne~E~clIE~SiNSvRiSi~i 80 (174)
T PTZ00278 1 MATTYQPYYDCIRKTLEAALCLGNFPSQIIERHNKPEVELNGYEGKSKELVLNPIYIVRSEKEKCLIEPSINSVRISFSF 80 (174)
T ss_pred CCcccchHHHHHHHHHHHHHHHhcCchHHHhccCCCcEEecCCCCCCHHHhcCcEEEEEcCCceEEEEcccceEEEEEEe
Confidence 8999999999999999999999999999999999999999 999999999999999999999999999999999999
Q ss_pred eccchHHHHHHHHHHHHHhccccceeeeeeCCCCccceeEeeehhHHHHhhhhhHHHHHHHHHHHHHHHHhhcchhcchh
Q 028136 121 KQADELENILTKKFLRFLSMRAEAFQVLRRKPVQGYDISFLITNYHCEEMQKHKLIDFIVQFMEDIDKEISELKMSVNTR 200 (213)
Q Consensus 121 kqaDeiE~iL~~kf~rFl~~RAe~F~ILRRKPv~GYDISFLITn~H~E~m~K~kLidFIi~FmeeiDkeIsemKL~lnaR 200 (213)
||+||||+||+|||++|||||||+|+|||||||+||||||||||+|+|+|+|||||||||+||||||||||||||++|+|
T Consensus 81 kqaDeie~iL~~kf~~Fl~~RAe~F~ILRrkPv~GYDISFLItn~H~e~m~k~kLidFIi~FmeeiDkeIsemKL~~NaR 160 (174)
T PTZ00278 81 KKSDELDVIIARKFVSFLAQRAEQFVILRRKPIPGYDISFLITNFHTENMFKHKLIDFIIDFMEDIDKDISDMKLNVNTR 160 (174)
T ss_pred hhhChHHHHHHHHHHHHHHhhhhceeEEeecCcCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHhhhC
Q 028136 201 GRLVATEFLKQFV 213 (213)
Q Consensus 201 aR~~A~~fl~~f~ 213 (213)
||+||++||++|+
T Consensus 161 aR~~A~~fl~~f~ 173 (174)
T PTZ00278 161 ARIAAPEFFKALA 173 (174)
T ss_pred HHHHHHHHHHHhc
Confidence 9999999999985
No 2
>PF05856 ARPC4: ARP2/3 complex 20 kDa subunit (ARPC4); InterPro: IPR008384 This family consists of several eukaryotic ARP2/3 complex 20 kDa subunit (P20-ARC) proteins. The Arp2/3 protein complex has been implicated in the control of actin polymerisation in cells. The human complex consists of seven subunits which include the actin related proteins Arp2 and Arp3 it has been suggested that the complex promotes actin assembly in lamellipodia and may participate in lamellipodial protrusion [].; GO: 0030041 actin filament polymerization, 0005856 cytoskeleton; PDB: 3DWL_K 1K8K_F 1U2V_F 2P9S_F 2P9U_F 2P9N_F 3DXK_F 1TYQ_F 3RSE_F 2P9I_F ....
Probab=100.00 E-value=5.5e-100 Score=636.50 Aligned_cols=168 Identities=72% Similarity=1.109 Sum_probs=139.7
Q ss_pred hhhhhhhHHHHHHHHHhHhhhccCCCchhhhhcCcCccccc--CCccccccceEEeecCCceEEEecCcceeEEEeeeec
Q 028136 45 MSNTLRLYLACIRNTLDAALCLQNFPCQEVERHNKPEVELK--TSPELLLNPILICRNEAEKCLIETSINSLRISLKVKQ 122 (213)
Q Consensus 45 Ma~tl~pYl~~VR~TL~aALCL~nF~Sq~VErhNkPEVE~~--~s~elLl~Pl~IsRne~EkcLIE~SINSvRVSi~ikq 122 (213)
||+||+|||+|||+||+|||||+|||||+||||||||||++ +|||+||||++|+||++|+||||||||||||||+|||
T Consensus 1 Ms~tl~pYl~~Vr~tL~aalcL~nf~sq~vErhnkPEVE~~~~~s~elll~pl~I~Rne~E~clIE~SiNSvRvSi~ikq 80 (170)
T PF05856_consen 1 MSATLRPYLDAVRRTLTAALCLQNFPSQVVERHNKPEVEVQGPSSKELLLNPLVISRNEKEKCLIEPSINSVRVSIKIKQ 80 (170)
T ss_dssp --TSHHHHHHHHHHHHHHHT-------SSSTT----HHHH-----CCCB---EEEESSSS-EEEEEEBSSEEEEEEE---
T ss_pred CCcchhhHHHHHHHHHHHHHHHhhCchhhhhhcCCCceeecCCCCHHHhcCceeeccCCCceEEEEcccceEEEEEEecc
Confidence 89999999999999999999999999999999999999999 9999999999999999999999999999999999999
Q ss_pred cchHHHHHHHHHHHHHhccccceeeeeeCCCCccceeEeeehhHHHHhhhhhHHHHHHHHHHHHHHHHhhcchhcchhhh
Q 028136 123 ADELENILTKKFLRFLSMRAEAFQVLRRKPVQGYDISFLITNYHCEEMQKHKLIDFIVQFMEDIDKEISELKMSVNTRGR 202 (213)
Q Consensus 123 aDeiE~iL~~kf~rFl~~RAe~F~ILRRKPv~GYDISFLITn~H~E~m~K~kLidFIi~FmeeiDkeIsemKL~lnaRaR 202 (213)
+||||+||||||++|||||||+|+|||||||+||||||||||+|+|+|+|||||||||+||||||||||||||++|+|||
T Consensus 81 ~Deie~iL~~kf~rFl~~RAe~F~ILRRkPv~GYDISFLIt~~h~e~m~k~kLidFIi~FmeeiDkeIs~mKl~~naRaR 160 (170)
T PF05856_consen 81 ADEIERILCHKFTRFLMQRAENFFILRRKPVEGYDISFLITNFHTEQMGKHKLIDFIITFMEEIDKEISEMKLSLNARAR 160 (170)
T ss_dssp -SCHHHHHHHHHHHHHHHCTTTSTTB-SS--TTSSEEEEEECCHHHHSTHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
T ss_pred cChHHHHHHHHHHHHHHhhhhhheeeeecCcCCCceeeeeechhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhh
Q 028136 203 LVATEFLKQF 212 (213)
Q Consensus 203 ~~A~~fl~~f 212 (213)
++|++||++|
T Consensus 161 ~~A~~fl~~f 170 (170)
T PF05856_consen 161 IVAEEFLKQF 170 (170)
T ss_dssp HHHHHHHCC-
T ss_pred HHHHHHHhcC
Confidence 9999999987
No 3
>KOG1876 consensus Actin-related protein Arp2/3 complex, subunit ARPC4 [Cytoskeleton]
Probab=100.00 E-value=3.5e-93 Score=589.79 Aligned_cols=168 Identities=71% Similarity=1.075 Sum_probs=166.8
Q ss_pred hhhhhhhHHHHHHHHHhHhhhccCCCchhhhhcCcCcccccCCccccccceEEeecCCceEEEecCcceeEEEeeeeccc
Q 028136 45 MSNTLRLYLACIRNTLDAALCLQNFPCQEVERHNKPEVELKTSPELLLNPILICRNEAEKCLIETSINSLRISLKVKQAD 124 (213)
Q Consensus 45 Ma~tl~pYl~~VR~TL~aALCL~nF~Sq~VErhNkPEVE~~~s~elLl~Pl~IsRne~EkcLIE~SINSvRVSi~ikqaD 124 (213)
|++||+|||.+||.||+|||||+|||||+||||||||||+++|+|+|++|++|||||+|+||||+|||||||||++||+|
T Consensus 1 ms~tl~pyl~avr~tl~aal~L~nFssq~VERhnkPEVEv~ss~elll~pv~isRNe~Ek~LIE~SiNSvRiSi~vKQaD 80 (168)
T KOG1876|consen 1 MSATLRPYLTAVRHTLTAALCLENFSSQEVERHNKPEVEVKSSKELLLTPVVISRNEQEKVLIEPSINSVRISIAVKQAD 80 (168)
T ss_pred CCchhHhHHHHHHHHHHHHHHHHhCCHHHHHhcCCCcceecCcHHHhhCceEeecccccceeEecccceEEEEEeecchH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHhccccceeeeeeCCCCccceeEeeehhHHHHhhhhhHHHHHHHHHHHHHHHHhhcchhcchhhhHH
Q 028136 125 ELENILTKKFLRFLSMRAEAFQVLRRKPVQGYDISFLITNYHCEEMQKHKLIDFIVQFMEDIDKEISELKMSVNTRGRLV 204 (213)
Q Consensus 125 eiE~iL~~kf~rFl~~RAe~F~ILRRKPv~GYDISFLITn~H~E~m~K~kLidFIi~FmeeiDkeIsemKL~lnaRaR~~ 204 (213)
|||+||||||+||||||||+|+|||||||+||||||||||+|+|+|+||||+||+|+||||+|||||+|||++|+|+|.+
T Consensus 81 EiE~IL~~KF~rFl~~RAe~F~iLRRkPv~gy~IsfLItn~hte~m~k~Klvdf~iefmeeidkeiSemkl~~n~rar~~ 160 (168)
T KOG1876|consen 81 EIERILCHKFTRFLMMRAEAFFILRRKPVQGYDISFLITNFHTEQMYKHKLVDFIIEFMEEIDKEISEMKLFLNARARQV 160 (168)
T ss_pred HHHHHHHHHHHHHHHHhhhhheeeeeCCcCccchhhhhhccchHHHHhchhHHHHHHHHHHHhhhhhhhccccchhhHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhh
Q 028136 205 ATEFLKQF 212 (213)
Q Consensus 205 A~~fl~~f 212 (213)
|++|++.|
T Consensus 161 ae~fl~~F 168 (168)
T KOG1876|consen 161 AEEFLKRF 168 (168)
T ss_pred HHHHHhcC
Confidence 99999976
No 4
>PF04045 P34-Arc: Arp2/3 complex, 34 kD subunit p34-Arc; InterPro: IPR007188 Arp2/3 protein complex has been implicated in the control of actin polymerisation in cells. The human complex consists of seven subunits, which include the actin related Arp2 and Arp3, and five others referred to as p41-Arc, p34-Arc, p21-Arc, p20-Arc, and p16-Arc []. This family represents the p34-Arc subunit.; GO: 0030833 regulation of actin filament polymerization, 0005856 cytoskeleton; PDB: 2P9L_D 2P9I_D 2P9U_D 3DXM_D 2P9N_D 1TYQ_D 3DXK_D 1K8K_D 2P9S_D 1U2V_D ....
Probab=83.25 E-value=30 Score=31.17 Aligned_cols=121 Identities=22% Similarity=0.278 Sum_probs=94.9
Q ss_pred ccceEEeecCCceEEEecCcceeEEEeeeeccchHHHHHHHHHHHHHhc-cc----cceeeeeeC---CCC---------
Q 028136 92 LNPILICRNEAEKCLIETSINSLRISLKVKQADELENILTKKFLRFLSM-RA----EAFQVLRRK---PVQ--------- 154 (213)
Q Consensus 92 l~Pl~IsRne~EkcLIE~SINSvRVSi~ikqaDeiE~iL~~kf~rFl~~-RA----e~F~ILRRK---Pv~--------- 154 (213)
-.|+.|-..++|-++|.++=+.|=|-|.+.-.|+-++++.+-|+.=+.. |- .+=++|... |.+
T Consensus 91 ~~~~~i~YR~~E~iyi~~~~DrVTVIFst~F~D~~D~vigkvFLQEFvdaRr~~~~~APqvlfS~~~PPlEl~~~~~~~~ 170 (241)
T PF04045_consen 91 EKPAVIHYRDDETIYIKPSKDRVTVIFSTRFKDEDDRVIGKVFLQEFVDARRRSRQTAPQVLFSHREPPLELRGVPGARN 170 (241)
T ss_dssp TT-EEEEECTTEEEEEEEESSEEEEEEEEE-SSCCHHHHHHHHHHHHHTGGGT--TTS-EEEEECSS--CGGTT-TT---
T ss_pred CceEEEEeCCCceEEEEeCCCEEEEEEEEEEcCCCCeEeeHHHHHHHHHhccccCCCCCceeccCCCCChhHcCCCCccc
Confidence 5678887888999999999999999999999999999999999976631 11 233455543 322
Q ss_pred ----ccceeEeeehhH-HHHhhhhhHHHHHHHHHHHHHHHHhhcchhcchhhhHHHHHHHhhh
Q 028136 155 ----GYDISFLITNYH-CEEMQKHKLIDFIVQFMEDIDKEISELKMSVNTRGRLVATEFLKQF 212 (213)
Q Consensus 155 ----GYDISFLITn~H-~E~m~K~kLidFIi~FmeeiDkeIsemKL~lnaRaR~~A~~fl~~f 212 (213)
+.-|||.+.-.| ++.=...+-|+.|..|=.-+-=-|.--|--+-+|=|.=.++|++-+
T Consensus 171 ~~~n~gyvTFvLfprH~~~~~~~~~ti~~l~~FR~YlhYHIKcsKaymHsRMR~Rv~~~lkvL 233 (241)
T PF04045_consen 171 LGDNVGYVTFVLFPRHFVTPERRDNTIWHLQTFRNYLHYHIKCSKAYMHSRMRKRVESFLKVL 233 (241)
T ss_dssp -STTEEEEEEEEEHHHGHSTTTHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCeEEEEEEEeccccCcchhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 234999999999 6666778899999999998888888888888899888888888754
No 5
>KOG2826 consensus Actin-related protein Arp2/3 complex, subunit ARPC2 [Cytoskeleton]
Probab=69.75 E-value=14 Score=34.43 Aligned_cols=65 Identities=26% Similarity=0.288 Sum_probs=39.1
Q ss_pred eEEEeeeeccchHHHHHHHHHHHHHhccccceeeeeeCCCCccceeEeeehhHHHHhhhhhHHHHHHHHHHHHHHHHhhc
Q 028136 114 LRISLKVKQADELENILTKKFLRFLSMRAEAFQVLRRKPVQGYDISFLITNYHCEEMQKHKLIDFIVQFMEDIDKEISEL 193 (213)
Q Consensus 114 vRVSi~ikqaDeiE~iL~~kf~rFl~~RAe~F~ILRRKPv~GYDISFLITn~H~E~m~K~kLidFIi~FmeeiDkeIsem 193 (213)
+++||+.|.--|+-.-=....++++.. -++.-|-+|||+|-||+-..+=+= -+.+-+.|+-+
T Consensus 55 illSislK~y~elq~~Ga~~LLk~~yg------~~~~epE~Gyn~slli~L~~lpa~------------~~~l~~~i~~l 116 (301)
T KOG2826|consen 55 ILLSISLKFYKELQLHGADDLLKRVYG------SYLSEPEPGYNVSLLIDLAELPAD------------KESLAKTISLL 116 (301)
T ss_pred EEEEEehhhHHHHHHcCHHHHHHHHhc------cccCCCCCCccEEEEEEHHhCchh------------HHHHHHHHHHh
Confidence 567888776555443222233333322 367789999999999987654221 34555666665
Q ss_pred chh
Q 028136 194 KMS 196 (213)
Q Consensus 194 KL~ 196 (213)
|.+
T Consensus 117 krn 119 (301)
T KOG2826|consen 117 KRN 119 (301)
T ss_pred hhh
Confidence 544
No 6
>PF14506 CppA_N: CppA N-terminal; PDB: 3E0R_D.
Probab=65.29 E-value=6.1 Score=32.90 Aligned_cols=36 Identities=28% Similarity=0.494 Sum_probs=26.1
Q ss_pred eecCCceEEEecC--cce---------eEEEeeeeccchHHHHHHHH
Q 028136 98 CRNEAEKCLIETS--INS---------LRISLKVKQADELENILTKK 133 (213)
Q Consensus 98 sRne~EkcLIE~S--INS---------vRVSi~ikqaDeiE~iL~~k 133 (213)
.++..|+.+||-| ..+ -|+.|++.+++|||.+|++.
T Consensus 38 ~~~~~erlvlEESP~~rtr~V~G~KKl~~ivIkv~~~~EIe~LLar~ 84 (125)
T PF14506_consen 38 DQQKEERLVLEESPSMRTRAVEGPKKLNRIVIKVPNPKEIEALLARG 84 (125)
T ss_dssp -TT--EEEEEEE--TTT-B--SSS-SEEEEEEEESSHHHHHHHHHC-
T ss_pred CCCCceEEEEecCCccccccccCcceeeEEEEEcCCHHHHHHHHhcc
Confidence 3688899999954 554 47999999999999999874
No 7
>PF04045 P34-Arc: Arp2/3 complex, 34 kD subunit p34-Arc; InterPro: IPR007188 Arp2/3 protein complex has been implicated in the control of actin polymerisation in cells. The human complex consists of seven subunits, which include the actin related Arp2 and Arp3, and five others referred to as p41-Arc, p34-Arc, p21-Arc, p20-Arc, and p16-Arc []. This family represents the p34-Arc subunit.; GO: 0030833 regulation of actin filament polymerization, 0005856 cytoskeleton; PDB: 2P9L_D 2P9I_D 2P9U_D 3DXM_D 2P9N_D 1TYQ_D 3DXK_D 1K8K_D 2P9S_D 1U2V_D ....
Probab=46.89 E-value=11 Score=33.82 Aligned_cols=42 Identities=24% Similarity=0.498 Sum_probs=26.0
Q ss_pred EEeeeeccchHHH-----HHHHHHHHHHhccccceeeeeeCCCCccceeEeeehhHH
Q 028136 116 ISLKVKQADELEN-----ILTKKFLRFLSMRAEAFQVLRRKPVQGYDISFLITNYHC 167 (213)
Q Consensus 116 VSi~ikqaDeiE~-----iL~~kf~rFl~~RAe~F~ILRRKPv~GYDISFLITn~H~ 167 (213)
|||.+|--+||.+ .|.++|-.++. -.|=+|||+|.+|.-..+
T Consensus 2 vSi~~~~~~~l~~~G~~e~l~~~Yg~~~~----------~~pe~Gy~~tL~idl~~l 48 (241)
T PF04045_consen 2 VSISLKCWKELQQYGAEEYLKREYGSYVQ----------TPPESGYDVTLVIDLEKL 48 (241)
T ss_dssp EEEE-TTHHHHHTTTHHHHHHHHCCCCE-----------ES--TTSSEEEEEETTS-
T ss_pred eEEEechHHHHHHcCHHHHHHHhcccccc----------CCCCCCccEEEEEEcccC
Confidence 6888888777654 44444433222 778899999999987765
No 8
>PTZ00040 translation initiation factor E4; Provisional
Probab=44.89 E-value=35 Score=30.63 Aligned_cols=37 Identities=14% Similarity=0.198 Sum_probs=31.1
Q ss_pred ceeEEEeeeeccchHHH--HHHHHHHHHHhccccceeee
Q 028136 112 NSLRISLKVKQADELEN--ILTKKFLRFLSMRAEAFQVL 148 (213)
Q Consensus 112 NSvRVSi~ikqaDeiE~--iL~~kf~rFl~~RAe~F~IL 148 (213)
+..|+|||++.+++=+. -|++++.+-|.++.|-+.|-
T Consensus 183 ~~~rIsIW~~~~~d~~~~~~i~~~i~~~l~~~l~~~~~~ 221 (233)
T PTZ00040 183 GVIRIEIWFTNLGDQSDRNQLMKEIETCMARRLDGSSGF 221 (233)
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHhcCcceec
Confidence 55899999999866554 48999999999999998775
No 9
>KOG2826 consensus Actin-related protein Arp2/3 complex, subunit ARPC2 [Cytoskeleton]
Probab=37.86 E-value=1.6e+02 Score=27.71 Aligned_cols=128 Identities=25% Similarity=0.374 Sum_probs=97.9
Q ss_pred CCchhhhhcCcCcccccCCccccccceEEeecCCceEEEecCcceeEEEeeeeccchHHHHHHHHHHHHHh-c-cc----
Q 028136 69 FPCQEVERHNKPEVELKTSPELLLNPILICRNEAEKCLIETSINSLRISLKVKQADELENILTKKFLRFLS-M-RA---- 142 (213)
Q Consensus 69 F~Sq~VErhNkPEVE~~~s~elLl~Pl~IsRne~EkcLIE~SINSvRVSi~ikqaDeiE~iL~~kf~rFl~-~-RA---- 142 (213)
|-.+-+|++++ .+|---..|-.+||++=+-|-|-+.-..-||=+.|+-+-|+.=+- - ||
T Consensus 131 ~Q~~~~e~~~r---------------~~I~YRddEti~i~~k~DRVTvvFsTiF~de~D~I~GKVFlQEf~e~Rra~qtA 195 (301)
T KOG2826|consen 131 FQEAGVEGEKR---------------AVIHYRDDETIYIEPKNDRVTVVFSTIFRDEDDVIIGKVFLQEFVEGRRASQTA 195 (301)
T ss_pred cchhhhhhhhe---------------eEEEeccCceEEEecCCCeEEEEEEEeeccCCceeehHHHHHHHHHHHhhhccc
Confidence 33344777776 455555679999999999999999988899999999999886442 2 22
Q ss_pred -cceeeeeeCCCC-------------ccceeEeeehhHHHHhhhhhHHHHHHHHHHHHHHHHhhcchhcchhhhHHHHHH
Q 028136 143 -EAFQVLRRKPVQ-------------GYDISFLITNYHCEEMQKHKLIDFIVQFMEDIDKEISELKMSVNTRGRLVATEF 208 (213)
Q Consensus 143 -e~F~ILRRKPv~-------------GYDISFLITn~H~E~m~K~kLidFIi~FmeeiDkeIsemKL~lnaRaR~~A~~f 208 (213)
.-+.-.|-.|.+ || |+|..--.|+..=.+..-|+.|-.|-.-.-=-|.--|.-+-+|-|+--..|
T Consensus 196 PqVLfShrePPLElkd~~~~~vgdn~gy-iTFVLFpRH~~k~~rd~tI~~i~~FRdylHyHIKcSKaYmHsRMR~k~~dF 274 (301)
T KOG2826|consen 196 PQVLFSHREPPLELKDLYDARVGDNIGY-ITFVLFPRHTNKETRDNTINLIHLFRDYLHYHIKCSKAYMHSRMRAKTSDF 274 (301)
T ss_pred cHHHhhcCCCCchhhhcCCcccccccce-EEEEEecccCCchhccchhHHHHHHHHHhhhhhhhhHHHHHHHHHHhHHHH
Confidence 223344666665 53 789999999998888999999999988887777777888888888888888
Q ss_pred Hhhh
Q 028136 209 LKQF 212 (213)
Q Consensus 209 l~~f 212 (213)
+|-+
T Consensus 275 lKVL 278 (301)
T KOG2826|consen 275 LKVL 278 (301)
T ss_pred HHHH
Confidence 8754
No 10
>PF15382 DUF4609: Domain of unknown function (DUF4609)
Probab=32.94 E-value=43 Score=25.55 Aligned_cols=34 Identities=29% Similarity=0.459 Sum_probs=26.9
Q ss_pred cCcccccCC-ccccccceEEeecCCceEEEecCcc
Q 028136 79 KPEVELKTS-PELLLNPILICRNEAEKCLIETSIN 112 (213)
Q Consensus 79 kPEVE~~~s-~elLl~Pl~IsRne~EkcLIE~SIN 112 (213)
||+|..++| |.....-++|.|-++|-..==+|+.
T Consensus 2 kpd~kqksskkk~viPqIiITraS~ETL~S~ss~~ 36 (70)
T PF15382_consen 2 KPDVKQKSSKKKVVIPQIIITRASNETLISYSSSG 36 (70)
T ss_pred CcchhhhccccccccceEEEEecCccceeeccCCC
Confidence 899998888 6677788999999999876555543
No 11
>PF14065 DUF4255: Protein of unknown function (DUF4255)
Probab=27.20 E-value=57 Score=26.29 Aligned_cols=73 Identities=19% Similarity=0.292 Sum_probs=49.7
Q ss_pred cCcceeEEEeeeeccchHHHHHHHHHHHHHhccccceeeeeeCCCCccceeEeeehhHHHHhhhhhHHHHHHHHHHHH
Q 028136 109 TSINSLRISLKVKQADELENILTKKFLRFLSMRAEAFQVLRRKPVQGYDISFLITNYHCEEMQKHKLIDFIVQFMEDI 186 (213)
Q Consensus 109 ~SINSvRVSi~ikqaDeiE~iL~~kf~rFl~~RAe~F~ILRRKPv~GYDISFLITn~H~E~m~K~kLidFIi~Fmeei 186 (213)
...+.-+|++.+.+..| |..+.+.... -.+..... ++.|---.|.+||||....-....|++.--+++|..+-
T Consensus 36 ~~~~~~~l~l~Ly~i~e-~~~~r~~~~~--~~~~~~~~--~~~ppl~l~L~yLvta~~~~~~~~~~~Lg~vi~~l~~~ 108 (179)
T PF14065_consen 36 SSPTDPTLNLFLYNIEE-NPTLRNSPPY--PRRNGDGT--RRRPPLPLNLHYLVTAWAENYEEELRLLGRVIQFLQDH 108 (179)
T ss_pred ccCCCCEEEEEEEEeEE-cccccCCCCc--cccCCCCc--ccCCCeEEEEEEEEEeCCCCchHHHHHHHHHHHHHHhC
Confidence 34567788888888754 2222222221 22223332 67777789999999999777778899999999998853
No 12
>PF04592 SelP_N: Selenoprotein P, N terminal region; InterPro: IPR007671 SelP is the only known eukaryotic selenoprotein that contains multiple selenocysteine (Sec) residues, and accounts for more than 50% of the selenium content of rat and human plasma []. It is thought to be glycosylated []. SelP may have antioxidant properties. It can attach to epithelial cells, and may protect vascular endothelial cells against peroxynitrite toxicity []. The high selenium content of SelP suggests that it may be involved in selenium intercellular transport or storage []. The promoter structure of bovine SelP suggests that it may be involved in countering heavy metal intoxication, and may also have a developmental function []. The N-terminal region of SelP can exist independently of the C-terminal region. Zebrafish selenoprotein Pb (Q98SV0 from SWISSPROT) lacks the C-terminal Sec-rich region, and a protein encoded by the rat SelP gene and lacking this region has also been reported []. The N-terminal region contains a conserved SecxxCys motif, which is similar to the CysxxCys found in thioredoxins. It is speculated that the N-terminal region may adopt a thioredoxin fold and catalyse redox reactions []. The N-terminal region also contains a His-rich region, which is thought to mediate heparin binding. Binding to heparan proteoglycans could account for the membrane binding properties of SelP []. The function of the bacterial members of this family is uncharacterised.; GO: 0008430 selenium binding
Probab=24.73 E-value=33 Score=31.22 Aligned_cols=14 Identities=36% Similarity=0.724 Sum_probs=12.3
Q ss_pred Ccc-ceeEeeehhHH
Q 028136 154 QGY-DISFLITNYHC 167 (213)
Q Consensus 154 ~GY-DISFLITn~H~ 167 (213)
+|| ||||+|-|.+-
T Consensus 58 ~g~~~I~f~vVN~~~ 72 (238)
T PF04592_consen 58 EGLSNISFMVVNHQG 72 (238)
T ss_pred CCCCceEEEEEcCCC
Confidence 699 99999999774
No 13
>PF01397 Terpene_synth: Terpene synthase, N-terminal domain; InterPro: IPR001906 Sequences containing this domain belong to the terpene synthase family. It has been suggested that this gene family be designated tps (for terpene synthase). Sequence comparisons reveal similarities between the monoterpene (C10) synthases, sesquiterpene (C15) synthases and the diterpene (C20) synthases. It has been split into six subgroups on the basis of phylogeny, called Tpsa-Tpsf []. Tpsa includes vetispiridiene synthase Q39979 from SWISSPROT, 5-epi- aristolochene synthase, Q40577 from SWISSPROT and (+)-delta-cadinene synthase P93665 from SWISSPROT . Tpsb includes (-)-limonene synthase, Q40322 from SWISSPROT. Tpsc includes copalyl diphosphate synthase (kaurene synthase A), O04408 from SWISSPROT. Tpsd includes taxadiene synthase, Q41594 from SWISSPROT, pinene synthase, O24475 from SWISSPROT and myrcene synthase, O24474 from SWISSPROT. Tpse includes ent-kaurene synthase B Q39548 from SWISSPROT. Tpsf includes linalool synthase Q9ZPN5 from SWISSPROT. In the fungus Phaeosphaeria sp. (strain L487) the synthesis of ent-kaurene from geranylgeranyl dophosphate is promoted by a single bifunctional protein [].; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 2ONH_A 2ONG_B 3P5R_A 3P5P_A 3N0F_A 3N0G_B 3PYB_A 3PYA_A 3G4F_A 3G4D_B ....
Probab=23.81 E-value=17 Score=31.06 Aligned_cols=42 Identities=29% Similarity=0.511 Sum_probs=29.1
Q ss_pred EEEeeeeccchHHHHHHHHHHHHHhcc---------ccceeeeeeCCCCcccee
Q 028136 115 RISLKVKQADELENILTKKFLRFLSMR---------AEAFQVLRRKPVQGYDIS 159 (213)
Q Consensus 115 RVSi~ikqaDeiE~iL~~kf~rFl~~R---------Ae~F~ILRRKPv~GYDIS 159 (213)
|..|.=-.-+||+.+|.+-|..+.... |=.|.+||. .||+||
T Consensus 58 RLGi~yhFe~EI~~~L~~i~~~~~~~~~~~~dL~~~AL~FRLLRq---hGy~VS 108 (183)
T PF01397_consen 58 RLGISYHFEDEIKEILDSIYRSWDEDNEEIDDLYTTALRFRLLRQ---HGYYVS 108 (183)
T ss_dssp HTTCGGGGHHHHHHHHHHHHHTTTTTSHTSSCHHHHHHHHHHHHH---TT----
T ss_pred HcCCcHHHHHHHHHHHHHHhhhccccccccCchhHHHHHHHHHHH---cCCccc
Confidence 445555667999999999998877666 346888986 799998
No 14
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=22.02 E-value=1.4e+02 Score=22.77 Aligned_cols=34 Identities=21% Similarity=0.431 Sum_probs=29.5
Q ss_pred HhhhhhHHHHHHHHHH---HHHHHHhhcchhcchhhh
Q 028136 169 EMQKHKLIDFIVQFME---DIDKEISELKMSVNTRGR 202 (213)
Q Consensus 169 ~m~K~kLidFIi~Fme---eiDkeIsemKL~lnaRaR 202 (213)
++.|+++.+.=-++.. .-+.||+.+|..+.+||+
T Consensus 42 ~~ir~~v~eLE~~h~kmK~~YEeEI~rLr~eLe~r~~ 78 (79)
T PF08581_consen 42 QQIRQKVYELEQAHRKMKQQYEEEIARLRRELEQRGR 78 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 5788999998888875 678899999999999987
No 15
>cd00487 Pep_deformylase Polypeptide or peptide deformylase; a family of metalloenzymes that catalyzes the removal of the N-terminal formyl group in a growing polypeptide chain following translation initiation during protein synthesis in prokaryotes. These enzymes utilize Fe(II) as the catalytic metal ion, which can be replaced with a nickel or cobalt ion with no loss of activity. There are two types of peptide deformylases, types I and II, which differ in structure only in the outer surface of the domain. Because these enzymes are essential only in prokaryotes (although eukaryotic gene sequences have been found), they are a target for a new class of antibacterial agents.
Probab=21.40 E-value=77 Score=25.66 Aligned_cols=62 Identities=21% Similarity=0.202 Sum_probs=40.6
Q ss_pred hhhhhHHHHHHHHHhHhhhccCCCchh--------hhhcCcCcccccCCccccccceEEeecCCceEEEecCc
Q 028136 47 NTLRLYLACIRNTLDAALCLQNFPCQE--------VERHNKPEVELKTSPELLLNPILICRNEAEKCLIETSI 111 (213)
Q Consensus 47 ~tl~pYl~~VR~TL~aALCL~nF~Sq~--------VErhNkPEVE~~~s~elLl~Pl~IsRne~EkcLIE~SI 111 (213)
..++..++..+.|+.++=|+.=-+.|+ ++.+.+ +-...+.++.||.++.+++.-...-|+|.
T Consensus 21 ~~~~~li~dm~~tm~~~~gvGLAApQIG~~~ri~vv~~~~~---~~~~~~~v~INP~I~~~s~~~~~~~EgCL 90 (141)
T cd00487 21 DELKQLIDDMFETMYAAPGVGLAAPQIGVSKRIFVIDVPDE---ENKEPPLVLINPEIIESSGETEYGEEGCL 90 (141)
T ss_pred HHHHHHHHHHHHHHHhCCCcEEEhhhcCCceeEEEEEcccc---cccccceEEECCeEeccCCCEeeCCcCCc
Confidence 567888888899998887777666666 322211 11234568999999976654434467754
Done!