BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028137
(213 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P53800|FDFT_NICBE Squalene synthase OS=Nicotiana benthamiana PE=2 SV=1
Length = 411
Score = 333 bits (854), Expect = 5e-91, Method: Compositional matrix adjust.
Identities = 168/211 (79%), Positives = 185/211 (87%)
Query: 1 MGLFLQKTNIIRDYLEDINEIPKCRMFWPREIWSKYVNKLEDLKYEENSDKAVQCLNDMV 60
MGLFLQKTNIIRDYLEDINE+PKCRMFWPREIWSKYVNKLE+LKYE+NS KAVQCLNDMV
Sbjct: 201 MGLFLQKTNIIRDYLEDINEVPKCRMFWPREIWSKYVNKLEELKYEDNSAKAVQCLNDMV 260
Query: 61 TNALMHVEDCLKYMSALRDHAIFRFCAIPQIMAIGTLALCYNNIEVFRGVVKMRRGLTAK 120
TNAL HVEDCL YMSALRD +IFRFCAIPQ+MAIGTLA+CY+NIEVFRGVVKMRRGLTAK
Sbjct: 261 TNALPHVEDCLTYMSALRDPSIFRFCAIPQVMAIGTLAMCYDNIEVFRGVVKMRRGLTAK 320
Query: 121 VIDRTNNMTDVYLAFYDFSNILKPKINKNDPNATKTLSRVEAIQKACMDSGVLNKRKSYI 180
VIDRT + DVY AF+DFS +LK K+N NDPNATKTL R+E I K C DSG LNKRKSYI
Sbjct: 321 VIDRTRTIADVYGAFFDFSCMLKSKVNNNDPNATKTLKRLEVILKTCRDSGTLNKRKSYI 380
Query: 181 IQSELRYSSTMIVIFFIILAIIFSYLSSTRA 211
I+SE YS +IV+ FIILAII + LS R+
Sbjct: 381 IRSEPNYSPVLIVVIFIILAIILAQLSGNRS 411
>sp|P53799|FDFT_ARATH Squalene synthase OS=Arabidopsis thaliana GN=SQS1 PE=2 SV=1
Length = 410
Score = 329 bits (844), Expect = 8e-90, Method: Compositional matrix adjust.
Identities = 154/208 (74%), Positives = 182/208 (87%), Gaps = 1/208 (0%)
Query: 1 MGLFLQKTNIIRDYLEDINEIPKCRMFWPREIWSKYVNKLEDLKYEENSDKAVQCLNDMV 60
MGLFLQKTNIIRDYLEDINEIPK RMFWPREIW KY +KLEDLKYEEN++K+VQCLN+MV
Sbjct: 203 MGLFLQKTNIIRDYLEDINEIPKSRMFWPREIWGKYADKLEDLKYEENTNKSVQCLNEMV 262
Query: 61 TNALMHVEDCLKYMSALRDHAIFRFCAIPQIMAIGTLALCYNNIEVFRGVVKMRRGLTAK 120
TNALMH+EDCLKYM +LRD +IFRFCAIPQIMAIGTLALCYNN +VFRGVVK+RRGLTAK
Sbjct: 263 TNALMHIEDCLKYMVSLRDPSIFRFCAIPQIMAIGTLALCYNNEQVFRGVVKLRRGLTAK 322
Query: 121 VIDRTNNMTDVYLAFYDFSNILKPKINKNDPNATKTLSRVEAIQKACMDSGVLNKRKSYI 180
VIDRT M DVY AFYDFS +LK K++KNDPNA+KTL+R+EA+QK C D+GVL RKSY
Sbjct: 323 VIDRTKTMADVYGAFYDFSCMLKTKVDKNDPNASKTLNRLEAVQKLCRDAGVLQNRKSY- 381
Query: 181 IQSELRYSSTMIVIFFIILAIIFSYLSS 208
+ + + +S I++ I+LAI+F+YL +
Sbjct: 382 VNDKGQPNSVFIIMVVILLAIVFAYLRA 409
>sp|Q9SDW9|BSS_BOTBR Squalene synthase OS=Botryococcus braunii GN=BSS PE=1 SV=1
Length = 461
Score = 194 bits (492), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 95/173 (54%), Positives = 116/173 (67%), Gaps = 6/173 (3%)
Query: 1 MGLFLQKTNIIRDYLEDINEIPKCRMFWPREIWSKYVNKLEDLKYEENSDKAVQCLNDMV 60
MGLFLQKTNIIRDY EDINE+P RMFWPREIW KY N L + K N A+ CLN+MV
Sbjct: 208 MGLFLQKTNIIRDYFEDINELPAPRMFWPREIWGKYANNLAEFKDPANKAAAMCCLNEMV 267
Query: 61 TNALMHVEDCLKYMSALRDHAIFRFCAIPQIMAIGTLALCYNNIEVFRG---VVKMRRGL 117
T+AL H CL+YMS + D IF FCAIPQ MA GTL+LCYNN +F G VK+RRG
Sbjct: 268 TDALRHAVYCLQYMSMIEDPQIFNFCAIPQTMAFGTLSLCYNNYTIFTGPKAAVKLRRGT 327
Query: 118 TAKVIDRTNNMTDVYLAFYDFSNILKPKIN---KNDPNATKTLSRVEAIQKAC 167
TAK++ +NNM +Y F +F+ L+ + N DP+ T TL + I+ AC
Sbjct: 328 TAKLMYTSNNMFAMYRHFLNFAEKLEVRCNTETSEDPSVTTTLEHLHKIKAAC 380
>sp|Q54DR1|FDFT_DICDI Squalene synthase OS=Dictyostelium discoideum GN=fdfT PE=3 SV=1
Length = 416
Score = 184 bits (468), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 87/171 (50%), Positives = 120/171 (70%), Gaps = 5/171 (2%)
Query: 1 MGLFLQKTNIIRDYLEDINEIPKCRMFWPREIWSKYVNKLEDLKYEENSDKAVQCLNDMV 60
MGLFLQKTNIIRDYLEDINE R+FWPR++W++Y LE+ K + A+ CLND++
Sbjct: 207 MGLFLQKTNIIRDYLEDINEK---RIFWPRDVWARYTLHLENFKEAKYQIPALHCLNDLI 263
Query: 61 TNALMHVEDCLKYMSALRDHAIFRFCAIPQIMAIGTLALCYNNIEVFRGVVKMRRGLTAK 120
TNAL H L YMS L++ + FCAIPQ+MAIGTL CYNN VF GVVK+R+G A
Sbjct: 264 TNALSHALIALDYMSRLKNPQVINFCAIPQVMAIGTLNACYNNYNVFTGVVKIRKGQRAL 323
Query: 121 VID--RTNNMTDVYLAFYDFSNILKPKINKNDPNATKTLSRVEAIQKACMD 169
++D ++ +T Y F+ F+N ++ K+ NDP+A KT+ +E+I+K C++
Sbjct: 324 IVDAIQSKGLTATYELFFKFANEMRHKVPPNDPSAKKTIQHLESIEKLCIE 374
>sp|Q02769|FDFT_RAT Squalene synthase OS=Rattus norvegicus GN=Fdft1 PE=2 SV=1
Length = 416
Score = 181 bits (459), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 91/208 (43%), Positives = 127/208 (61%), Gaps = 11/208 (5%)
Query: 1 MGLFLQKTNIIRDYLEDINEIPKCRMFWPREIWSKYVNKLEDLKYEENSDKAVQCLNDMV 60
MGLFLQKTNIIRDYLED E R FWP+E+W KYV KLED EN D AV+CLN+++
Sbjct: 207 MGLFLQKTNIIRDYLEDQQE---GRQFWPQEVWGKYVKKLEDFVKPENVDVAVKCLNELI 263
Query: 61 TNALMHVEDCLKYMSALRDHAIFRFCAIPQIMAIGTLALCYNNIEVFRGVVKMRRGLTAK 120
TNAL H+ D + Y+S LR+ ++F FCAIPQ+MAI TLA CYNN +VF+GVVK+R+G
Sbjct: 264 TNALQHIPDVITYLSRLRNQSVFNFCAIPQVMAIATLAACYNNHQVFKGVVKIRKGQAVT 323
Query: 121 VIDRTNNMTDVYLAFYDFSNILKPKINKNDPNATKTLSRVEAIQKACMDSGVLNKRKSYI 180
++ NM V Y + + ++ +DP+A+K + I+ + + L R
Sbjct: 324 LMMDATNMPAVKAIIYQYIEEIYHRVPNSDPSASKAKQLISNIRTQSLPNCQLISRS--- 380
Query: 181 IQSELRYSSTMIVIFFIILAIIFSYLSS 208
YS + ++ A+ + YLS+
Sbjct: 381 -----HYSPIYLSFIMLLAALSWQYLST 403
>sp|P53798|FDFT_MOUSE Squalene synthase OS=Mus musculus GN=Fdft1 PE=2 SV=2
Length = 416
Score = 181 bits (459), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 91/208 (43%), Positives = 127/208 (61%), Gaps = 11/208 (5%)
Query: 1 MGLFLQKTNIIRDYLEDINEIPKCRMFWPREIWSKYVNKLEDLKYEENSDKAVQCLNDMV 60
MGLFLQKTNIIRDYLED E R FWP+E+W +Y+ KLED EN D AVQCLN+++
Sbjct: 207 MGLFLQKTNIIRDYLEDQQE---GRKFWPQEVWGRYIKKLEDFAKPENVDVAVQCLNELI 263
Query: 61 TNALMHVEDCLKYMSALRDHAIFRFCAIPQIMAIGTLALCYNNIEVFRGVVKMRRGLTAK 120
TN L H+ D L Y+S LR+ ++F FCAIPQ+MAI TLA CYNN +VF+GVVK+R+G
Sbjct: 264 TNTLQHIPDVLTYLSRLRNQSVFNFCAIPQVMAIATLAACYNNQQVFKGVVKIRKGQAVT 323
Query: 121 VIDRTNNMTDVYLAFYDFSNILKPKINKNDPNATKTLSRVEAIQKACMDSGVLNKRKSYI 180
++ NM V Y + + +I +DP+++KT + I+ + + L R
Sbjct: 324 LMMDATNMPAVKAIIYQYIEEIYHRIPNSDPSSSKTKQVISKIRTQNLPNCQLISRS--- 380
Query: 181 IQSELRYSSTMIVIFFIILAIIFSYLSS 208
YS + ++ A+ + YLS+
Sbjct: 381 -----HYSPIYLSFIMLLAALSWQYLST 403
>sp|Q32KR6|FDFT_BOVIN Squalene synthase OS=Bos taurus GN=FDFT1 PE=2 SV=1
Length = 417
Score = 178 bits (452), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 93/208 (44%), Positives = 125/208 (60%), Gaps = 11/208 (5%)
Query: 1 MGLFLQKTNIIRDYLEDINEIPKCRMFWPREIWSKYVNKLEDLKYEENSDKAVQCLNDMV 60
MGLFLQKTNIIRDYLED E R FWP+E WSKYV KL D EN D AVQCLN+++
Sbjct: 207 MGLFLQKTNIIRDYLEDQRE---GREFWPQETWSKYVKKLGDFAKPENIDLAVQCLNELI 263
Query: 61 TNALMHVEDCLKYMSALRDHAIFRFCAIPQIMAIGTLALCYNNIEVFRGVVKMRRGLTAK 120
TN L H+ D + Y+S LR+ +IF FCAIPQ+MAI TLA CYNN +VF+GVVK+R+G
Sbjct: 264 TNTLHHIPDVITYLSRLRNQSIFNFCAIPQVMAIATLAACYNNQQVFKGVVKIRKGQAVT 323
Query: 121 VIDRTNNMTDVYLAFYDFSNILKPKINKNDPNATKTLSRVEAIQKACMDSGVLNKRKSYI 180
++ NM V + + + +I +DP +TKT + I+ + + L R
Sbjct: 324 LMMDATNMPAVKAIIHQYMEEIYHRIPNSDPCSTKTQQIISTIRTQNLPNCQLVSRS--- 380
Query: 181 IQSELRYSSTMIVIFFIILAIIFSYLSS 208
YS + ++ A+ + YLS+
Sbjct: 381 -----HYSPIYLSFVMLLAALSWQYLST 403
>sp|G0Y287|BOSS_BOTBR Botryococcus squalene synthase OS=Botryococcus braunii GN=SSL-2
PE=1 SV=1
Length = 465
Score = 178 bits (451), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 89/170 (52%), Positives = 105/170 (61%), Gaps = 3/170 (1%)
Query: 1 MGLFLQKTNIIRDYLEDINEIPKCRMFWPREIWSKYVNKLEDLKYEENSDKAVQCLNDMV 60
MG FLQKTN+IRDYLEDINE P RMFWPREIW KY +L D K N AVQCLN MV
Sbjct: 204 MGQFLQKTNVIRDYLEDINEEPAPRMFWPREIWGKYAQELADFKDPANEKAAVQCLNHMV 263
Query: 61 TNALMHVEDCLKYMSALRDHAIFRFCAIPQIMAIGTLALCYNNIEVFRGVVKMRRGLTAK 120
T+AL H E L + L++ I R C IP++M + TL LCYNN +VFRGVVKMRRG TAK
Sbjct: 264 TDALRHCEIGLNVIPLLQNIGILRSCLIPEVMGLRTLTLCYNNPQVFRGVVKMRRGETAK 323
Query: 121 VIDRTNNMTDVYLAFYDFSNILKPKIN---KNDPNATKTLSRVEAIQKAC 167
+ + Y + +N L+ K DP TL V IQK+C
Sbjct: 324 LFMSIYDKRSFYQTYLRLANELEAKCKGEASGDPMVATTLKHVHGIQKSC 373
>sp|Q5R6U3|FDFT_PONAB Squalene synthase OS=Pongo abelii GN=FDFT1 PE=2 SV=1
Length = 417
Score = 176 bits (447), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 89/208 (42%), Positives = 126/208 (60%), Gaps = 11/208 (5%)
Query: 1 MGLFLQKTNIIRDYLEDINEIPKCRMFWPREIWSKYVNKLEDLKYEENSDKAVQCLNDMV 60
MGLFLQKTNIIRDYLED R FWP+E+WS+YV KL D EN D AVQCLN+++
Sbjct: 207 MGLFLQKTNIIRDYLEDQQ---GGREFWPQEVWSRYVKKLGDFAKPENIDLAVQCLNELI 263
Query: 61 TNALMHVEDCLKYMSALRDHAIFRFCAIPQIMAIGTLALCYNNIEVFRGVVKMRRGLTAK 120
TNAL H+ D + Y+S LR+ ++F FCAIPQ+MAI TLA CYNN +VF+G VK+R+G
Sbjct: 264 TNALHHIPDVITYLSRLRNQSVFNFCAIPQVMAIATLAACYNNQQVFKGAVKIRKGQAVT 323
Query: 121 VIDRTNNMTDVYLAFYDFSNILKPKINKNDPNATKTLSRVEAIQKACMDSGVLNKRKSYI 180
++ NM V Y + + +I +DP+++KT + I+ + + L R
Sbjct: 324 LMMDATNMPAVKAIIYQYMEEIYHRIPDSDPSSSKTRQIISTIRTQNLPNCQLISRS--- 380
Query: 181 IQSELRYSSTMIVIFFIILAIIFSYLSS 208
YS + ++ A+ + YL++
Sbjct: 381 -----HYSPIYLSFVMLLAALSWQYLTT 403
>sp|P37268|FDFT_HUMAN Squalene synthase OS=Homo sapiens GN=FDFT1 PE=1 SV=1
Length = 417
Score = 176 bits (447), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 89/208 (42%), Positives = 126/208 (60%), Gaps = 11/208 (5%)
Query: 1 MGLFLQKTNIIRDYLEDINEIPKCRMFWPREIWSKYVNKLEDLKYEENSDKAVQCLNDMV 60
MGLFLQKTNIIRDYLED R FWP+E+WS+YV KL D EN D AVQCLN+++
Sbjct: 207 MGLFLQKTNIIRDYLEDQQ---GGREFWPQEVWSRYVKKLGDFAKPENIDLAVQCLNELI 263
Query: 61 TNALMHVEDCLKYMSALRDHAIFRFCAIPQIMAIGTLALCYNNIEVFRGVVKMRRGLTAK 120
TNAL H+ D + Y+S LR+ ++F FCAIPQ+MAI TLA CYNN +VF+G VK+R+G
Sbjct: 264 TNALHHIPDVITYLSRLRNQSVFNFCAIPQVMAIATLAACYNNQQVFKGAVKIRKGQAVT 323
Query: 121 VIDRTNNMTDVYLAFYDFSNILKPKINKNDPNATKTLSRVEAIQKACMDSGVLNKRKSYI 180
++ NM V Y + + +I +DP+++KT + I+ + + L R
Sbjct: 324 LMMDATNMPAVKAIIYQYMEEIYHRIPDSDPSSSKTRQIISTIRTQNLPNCQLISRS--- 380
Query: 181 IQSELRYSSTMIVIFFIILAIIFSYLSS 208
YS + ++ A+ + YL++
Sbjct: 381 -----HYSPIYLSFVMLLAALSWQYLTT 403
>sp|G0Y288|BOCS_BOTBR Botryococcene synthase OS=Botryococcus braunii GN=SSL-3 PE=2 SV=1
Length = 383
Score = 165 bits (418), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 74/167 (44%), Positives = 112/167 (67%), Gaps = 1/167 (0%)
Query: 1 MGLFLQKTNIIRDYLEDINEIPKCRMFWPREIWSKYVNKLEDLKYEENSDKAVQCLNDMV 60
M +FL K N+IRD ED+ E P R++WP+EIW KY+ L D+ E +A+ CLND++
Sbjct: 202 MAMFLGKINVIRDIKEDVLEDPP-RIWWPKEIWGKYLKDLRDIIKPEYQKEALACLNDIL 260
Query: 61 TNALMHVEDCLKYMSALRDHAIFRFCAIPQIMAIGTLALCYNNIEVFRGVVKMRRGLTAK 120
T+AL H+E CL+YM + D +F+FCA+P++M++ T+++CYNN +VF GVVKMRRG TAK
Sbjct: 261 TDALRHIEPCLQYMEMVWDEGVFKFCAVPELMSLATISVCYNNPKVFTGVVKMRRGETAK 320
Query: 121 VIDRTNNMTDVYLAFYDFSNILKPKINKNDPNATKTLSRVEAIQKAC 167
+ NM +Y +F + ++ K + DPN T+ R++ +Q C
Sbjct: 321 LFLSVTNMPALYKSFSAIAEEMEAKCVREDPNFALTVKRLQDVQALC 367
>sp|P78589|FDFT_CANAX Squalene synthase OS=Candida albicans GN=ERG9 PE=3 SV=1
Length = 448
Score = 156 bits (395), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 78/170 (45%), Positives = 106/170 (62%), Gaps = 6/170 (3%)
Query: 1 MGLFLQKTNIIRDYLEDINEIPKCRMFWPREIWSKYVNKLEDLKYEENSDK---AVQCLN 57
MGLFLQKTNIIRDY ED+ + R FWPREIWSKY L+D + K V C+N
Sbjct: 215 MGLFLQKTNIIRDYHEDLQD---GRSFWPREIWSKYTENLQDFHKVKTPAKEFAGVSCIN 271
Query: 58 DMVTNALMHVEDCLKYMSALRDHAIFRFCAIPQIMAIGTLALCYNNIEVFRGVVKMRRGL 117
++V NAL HV DCL Y+S ++D + F FCAIPQ+MA+ TLA YNN +V GVVK+R+G
Sbjct: 272 ELVLNALGHVTDCLDYLSLVKDPSSFSFCAIPQVMAVATLAEVYNNPKVLHGVVKIRKGT 331
Query: 118 TAKVIDRTNNMTDVYLAFYDFSNILKPKINKNDPNATKTLSRVEAIQKAC 167
T ++I + + V F ++ ++ K + DPN K + I++ C
Sbjct: 332 TCRLILESRTLPGVVKIFKEYIQVINHKSSVRDPNYLKIGIKCGEIEQYC 381
>sp|Q9Y753|FDFT_YARLI Squalene synthase OS=Yarrowia lipolytica (strain CLIB 122 / E 150)
GN=SQS1 PE=3 SV=1
Length = 445
Score = 149 bits (376), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 88/209 (42%), Positives = 116/209 (55%), Gaps = 13/209 (6%)
Query: 1 MGLFLQKTNIIRDYLEDINEIPKCRMFWPREIWSKYVNKLEDLKYEENSDKAVQCLNDMV 60
MGLFLQK NIIRDY EDI+ R FWPREIW KY ++ D K + S KA+ C +D+V
Sbjct: 214 MGLFLQKVNIIRDYREDID---VNRAFWPREIWHKYAEEMRDFKDPKYSKKALHCTSDLV 270
Query: 61 TNALMHVEDCLKYMSALRDHAIFRFCAIPQIMAIGTLALCYNNIEVFRGVVKMRRGLTAK 120
NAL H DCL Y+ + D + F FCAIPQ+MAI TL L Y N +VF+ VK+R+G T
Sbjct: 271 ANALGHATDCLDYLDNVTDPSTFTFCAIPQVMAIATLDLVYRNPDVFQKNVKLRKGTTVS 330
Query: 121 VIDRTNNMTDVYLAFYDFSNILKPKINKNDPNATKTLSRVEAIQKACMDSGVLNKRK--- 177
+I +N++ V F ++ + K + NDPN RV + L KR+
Sbjct: 331 LILEASNVSGVCDIFTRYARKVYKKSDPNDPN----YFRVSVLCGKIEQHAALIKRQRGP 386
Query: 178 --SYIIQSELRYSSTMIVIFFIILAIIFS 204
I Q E M + + LA+IFS
Sbjct: 387 PAKTIAQLEGE-RKEMALSLIVCLAVIFS 414
>sp|Q9HGZ6|FDFT_CANGA Squalene synthase OS=Candida glabrata (strain ATCC 2001 / CBS 138 /
JCM 3761 / NBRC 0622 / NRRL Y-65) GN=ERG9 PE=3 SV=2
Length = 443
Score = 149 bits (375), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 75/165 (45%), Positives = 105/165 (63%), Gaps = 3/165 (1%)
Query: 1 MGLFLQKTNIIRDYLEDINEIPKCRMFWPREIWSKYVNKLEDLKYEENSDKAVQCLNDMV 60
MGLFLQKTNIIRDY ED+++ R FWP+EIWS+Y KL D + +N+ K V C+N +V
Sbjct: 217 MGLFLQKTNIIRDYAEDLDD---GRSFWPKEIWSEYATKLTDFRDPKNTQKGVDCINHLV 273
Query: 61 TNALMHVEDCLKYMSALRDHAIFRFCAIPQIMAIGTLALCYNNIEVFRGVVKMRRGLTAK 120
NAL HV D L Y+S++ + + F+FCAIPQ+MAI TLA +NN EV R VK+R+G T
Sbjct: 274 LNALTHVIDVLTYLSSIHEQSSFQFCAIPQVMAIATLAKVFNNPEVLRKNVKIRKGTTCD 333
Query: 121 VIDRTNNMTDVYLAFYDFSNILKPKINKNDPNATKTLSRVEAIQK 165
+I + + F + +K ++ DPN K +V I++
Sbjct: 334 LILNSRTLKGCVDIFQYYLRDMKQRLPVEDPNYLKFNIQVAKIEQ 378
>sp|G0Y286|PSDS_BOTBR Presqualene diphosphate synthase OS=Botryococcus braunii GN=SSL-1
PE=1 SV=1
Length = 403
Score = 148 bits (374), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 73/173 (42%), Positives = 102/173 (58%), Gaps = 3/173 (1%)
Query: 1 MGLFLQKTNIIRDYLEDINEIPKCRMFWPREIWSKYVNKLEDLKYEENSDKAVQCLNDMV 60
+GL LQK NII DY EDINE P+ RMFWP+EIW KY KL D EN D AV+CLN MV
Sbjct: 210 LGLLLQKANIITDYNEDINEEPRPRMFWPQEIWGKYAEKLADFNEPENIDTAVKCLNHMV 269
Query: 61 TNALMHVEDCLKYMSALRDHAIFRFCAIPQIMAIGTLALCYNNIEVFRGVVKMRRGLTAK 120
T+A+ H+E LK M D +FR A+ + A G L+ YNN VF+ V+ R+G A+
Sbjct: 270 TDAMRHIEPSLKGMVYFTDKTVFRALALLLVTAFGHLSTLYNNPNVFKEKVRQRKGRIAR 329
Query: 121 VIDRTNNMTDVYLAFYDFSNILKPKINK---NDPNATKTLSRVEAIQKACMDS 170
++ + N+ ++ +N + + + NDP T+ R+++IQ C D
Sbjct: 330 LVMSSRNVPGLFRTCLKLANNFESRCKQETANDPTVAMTIKRLQSIQATCRDG 382
>sp|P36596|FDFT_SCHPO Squalene synthase OS=Schizosaccharomyces pombe (strain 972 / ATCC
24843) GN=erg9 PE=1 SV=1
Length = 460
Score = 148 bits (373), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 74/155 (47%), Positives = 99/155 (63%), Gaps = 3/155 (1%)
Query: 1 MGLFLQKTNIIRDYLEDINEIPKCRMFWPREIWSKYVNKLEDLKYEENSDKAVQCLNDMV 60
+GLFLQK NIIRDY ED ++ R FWPREIWSKY + DL +NS+KA++CL+DM
Sbjct: 211 LGLFLQKVNIIRDYREDFDD---NRHFWPREIWSKYTSSFGDLCLPDNSEKALECLSDMT 267
Query: 61 TNALMHVEDCLKYMSALRDHAIFRFCAIPQIMAIGTLALCYNNIEVFRGVVKMRRGLTAK 120
NAL H D L Y+S L+ IF FCAIPQ+MAI TLA + N +VF+ VK+R+G +
Sbjct: 268 ANALTHATDALVYLSQLKTQEIFNFCAIPQVMAIATLAAVFRNPDVFQTNVKIRKGQAVQ 327
Query: 121 VIDRTNNMTDVYLAFYDFSNILKPKINKNDPNATK 155
+I + N+ +V F ++ + K DPN K
Sbjct: 328 IILHSVNLKNVCDLFLRYTRDIHYKNTPKDPNFLK 362
>sp|P29704|FDFT_YEAST Squalene synthase OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=ERG9 PE=1 SV=2
Length = 444
Score = 145 bits (367), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 73/165 (44%), Positives = 103/165 (62%), Gaps = 3/165 (1%)
Query: 1 MGLFLQKTNIIRDYLEDINEIPKCRMFWPREIWSKYVNKLEDLKYEENSDKAVQCLNDMV 60
MGLFLQKTNIIRDY ED+ + R FWP+EIWS+Y +L+D EN + C+N +V
Sbjct: 214 MGLFLQKTNIIRDYNEDLVD---GRSFWPKEIWSQYAPQLKDFMKPENEQLGLDCINHLV 270
Query: 61 TNALMHVEDCLKYMSALRDHAIFRFCAIPQIMAIGTLALCYNNIEVFRGVVKMRRGLTAK 120
NAL HV D L Y++ + + + F+FCAIPQ+MAI TLAL +NN EV G VK+R+G T
Sbjct: 271 LNALSHVIDVLTYLAGIHEQSTFQFCAIPQVMAIATLALVFNNREVLHGNVKIRKGTTCY 330
Query: 121 VIDRTNNMTDVYLAFYDFSNILKPKINKNDPNATKTLSRVEAIQK 165
+I ++ + F + +K K+ DPN K ++ I++
Sbjct: 331 LILKSRTLRGCVEIFDYYLRDIKSKLAVQDPNFLKLNIQISKIEQ 375
>sp|Q752X9|FDFT_ASHGO Squalene synthase OS=Ashbya gossypii (strain ATCC 10895 / CBS
109.51 / FGSC 9923 / NRRL Y-1056) GN=ERG9 PE=3 SV=1
Length = 441
Score = 140 bits (354), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 68/155 (43%), Positives = 95/155 (61%), Gaps = 3/155 (1%)
Query: 1 MGLFLQKTNIIRDYLEDINEIPKCRMFWPREIWSKYVNKLEDLKYEENSDKAVQCLNDMV 60
MGLFLQKTNIIRDY ED+ + R FWP+EIWS Y + L EN+ V C+N +V
Sbjct: 215 MGLFLQKTNIIRDYAEDLAD---GRSFWPKEIWSHYADDLASFSKPENATAGVYCINHLV 271
Query: 61 TNALMHVEDCLKYMSALRDHAIFRFCAIPQIMAIGTLALCYNNIEVFRGVVKMRRGLTAK 120
NAL HV+ L Y+++LR+ + F+FCAIPQ+MAI TLAL + N V + VK+R+G T
Sbjct: 272 LNALGHVQHVLTYLASLREQSSFQFCAIPQVMAIATLALVFGNERVLQTSVKIRKGTTCY 331
Query: 121 VIDRTNNMTDVYLAFYDFSNILKPKINKNDPNATK 155
+I ++ F + ++ ++ DPN K
Sbjct: 332 LILKSRTFQGCVEIFEHYLRDIRKRLTVADPNYLK 366
>sp|Q7S4Z6|FDFT_NEUCR Probable squalene synthase OS=Neurospora crassa (strain ATCC 24698
/ 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)
GN=erg-9 PE=3 SV=1
Length = 481
Score = 136 bits (343), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 71/153 (46%), Positives = 96/153 (62%), Gaps = 4/153 (2%)
Query: 1 MGLFLQKTNIIRDYLEDINEIPKCRMFWPREIWSKYVNKLEDLKYEENSDKAVQCLNDMV 60
MG FLQKTNIIRD ED + R FWP+ IWSKYVN +D+ EN +KA+QC ++MV
Sbjct: 217 MGQFLQKTNIIRDIHEDYVD---KRRFWPKTIWSKYVNTWDDMFKPENREKALQCSSEMV 273
Query: 61 TNALMHVEDCLKYMSALRDHAIFRFCAIPQIMAIGTLALCYNNIEVFRGVVKMRRGLTAK 120
NAL H EDCL YM+ +RD ++F F AIPQ MAI TL L + N +F VK+ +G +
Sbjct: 274 LNALKHTEDCLFYMAGMRDQSVFNFVAIPQAMAIATLELVFRNPAIFERNVKITKGDACQ 333
Query: 121 V-IDRTNNMTDVYLAFYDFSNILKPKINKNDPN 152
+ ++ T N+ V F ++ + K + DPN
Sbjct: 334 LMMESTQNLRVVCEVFRRYARRIHKKNDPRDPN 366
>sp|O74165|FDFT_CYBJA Squalene synthase OS=Cyberlindnera jadinii GN=ERG9 PE=3 SV=1
Length = 443
Score = 135 bits (339), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 68/164 (41%), Positives = 98/164 (59%), Gaps = 6/164 (3%)
Query: 1 MGLFLQKTNIIRDYLEDINEIPKCRMFWPREIWSKYVNKLEDLKYEENSDKAVQCLNDMV 60
MGLFLQKTNIIRDY ED + R FWP+EIW KY N+L D EN + + C++++V
Sbjct: 214 MGLFLQKTNIIRDYEEDQVD---GRAFWPKEIWGKYANELSDFMKPENQSQGLWCISELV 270
Query: 61 TNALMHVEDCLKYMSALRDHAIFRFCAIPQIMAIGTLALCYNNIEVFRGVVKMRRGLTAK 120
NAL HV D L+Y++ + + F FCAIPQ+MAI TL L + N +V VK+R+G T
Sbjct: 271 CNALDHVIDVLQYLALVEEQTSFNFCAIPQVMAIATLELVFQNPQVLTQHVKIRKGTTVS 330
Query: 121 VIDRTNNMTDVYLAFYDFSNILKPKINKNDPNATK---TLSRVE 161
+I + + F + + K + +DPN + T+ ++E
Sbjct: 331 LILESRTLEGCARIFRRYLRKIHHKSHPSDPNYLRLGITIGKIE 374
>sp|Q92459|FDFT_USTMA Squalene synthase OS=Ustilago maydis (strain 521 / FGSC 9021)
GN=ERG9 PE=3 SV=2
Length = 572
Score = 124 bits (310), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 66/184 (35%), Positives = 100/184 (54%), Gaps = 20/184 (10%)
Query: 1 MGLFLQKTNIIRDYLEDINEIPKCRMFWPREIWSKYVNKLED---------------LKY 45
MGLFLQKTNIIRDY ED E R FWP++ W K E +
Sbjct: 222 MGLFLQKTNIIRDYAEDCEE---GRYFWPQQCWGDDFAKFESQPDVAKGIIEIKPGHFRP 278
Query: 46 EEN--SDKAVQCLNDMVTNALMHVEDCLKYMSALRDHAIFRFCAIPQIMAIGTLALCYNN 103
+N +++ L+ M+ +A+ H L Y++ L++ ++F FCAIPQ+MAI TL L +NN
Sbjct: 279 ADNELGQRSMYVLSSMLLDAMSHATHALDYLALLKEQSVFNFCAIPQVMAIATLELMFNN 338
Query: 104 IEVFRGVVKMRRGLTAKVIDRTNNMTDVYLAFYDFSNILKPKINKNDPNATKTLSRVEAI 163
+VF+ VK+R+G+ +I R N DV F +S + +++ DPN T+ + I
Sbjct: 339 PDVFKKNVKIRKGVAVGLILRAVNPRDVAYTFLHYSRKMHARLSPADPNFTRWSVELARI 398
Query: 164 QKAC 167
++ C
Sbjct: 399 EQWC 402
>sp|Q4UMD8|SYI_RICFE Isoleucine--tRNA ligase OS=Rickettsia felis (strain ATCC VR-1525 /
URRWXCal2) GN=ileS PE=3 SV=1
Length = 1094
Score = 37.7 bits (86), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 58/128 (45%), Gaps = 17/128 (13%)
Query: 50 DKAVQCLNDMVTNALMHVEDCL--KYMSALRDHAIFR--FCAIPQIMAIGTLALCYNNIE 105
D+ V+ LN + HV+D L K++ RD +I R F P + + Y I+
Sbjct: 443 DRMVE-LNQQINWIPFHVKDNLFGKWLENARDWSISRNRFWGTP-LPVWKSDDPKYPRID 500
Query: 106 VFRGVVKMRRGLTAKVIDRTNNMTDVYLAFYDFSNILKPKINKNDPNATKTLSRVEAIQK 165
V+ + ++ + KV TD++ F D + +P N NDP T+ R+E +
Sbjct: 501 VYGSIEELEKDFGVKV-------TDLHRPFID--ELARP--NPNDPTGKSTMRRIEDVFD 549
Query: 166 ACMDSGVL 173
+SG +
Sbjct: 550 CWFESGSM 557
>sp|A8GPA1|SYI_RICAH Isoleucine--tRNA ligase OS=Rickettsia akari (strain Hartford)
GN=ileS PE=3 SV=1
Length = 1103
Score = 37.0 bits (84), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 58/128 (45%), Gaps = 17/128 (13%)
Query: 50 DKAVQCLNDMVTNALMHVEDCL--KYMSALRDHAIFR--FCAIPQIMAIGTLALCYNNIE 105
D+ V+ LN + HV+D L K++ RD +I R F P + + Y I+
Sbjct: 447 DRMVE-LNQQINWIPHHVKDNLFGKWLENARDWSISRNRFWGTP-LPVWKSDDPKYPRID 504
Query: 106 VFRGVVKMRRGLTAKVIDRTNNMTDVYLAFYDFSNILKPKINKNDPNATKTLSRVEAIQK 165
V+ + ++ + KV TD++ F D + +P N NDP T+ R+E +
Sbjct: 505 VYGSIEELEKDFGVKV-------TDLHRPFID--KLTRP--NPNDPTGKSTMRRIEDVFD 553
Query: 166 ACMDSGVL 173
+SG +
Sbjct: 554 CWFESGSM 561
>sp|C4K2T0|SYI_RICPU Isoleucine--tRNA ligase OS=Rickettsia peacockii (strain Rustic)
GN=ileS PE=3 SV=1
Length = 1092
Score = 36.2 bits (82), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 58/128 (45%), Gaps = 17/128 (13%)
Query: 50 DKAVQCLNDMVTNALMHVEDCL--KYMSALRDHAIFR--FCAIPQIMAIGTLALCYNNIE 105
D+ V+ LN + HV+D L K++ RD +I R F P + + Y I+
Sbjct: 432 DRMVE-LNQQINWIPFHVKDNLFGKWLENARDWSISRNRFWGTP-LPVWKSDDPKYPRID 489
Query: 106 VFRGVVKMRRGLTAKVIDRTNNMTDVYLAFYDFSNILKPKINKNDPNATKTLSRVEAIQK 165
V+ + ++ + KV TD++ F D + +P N +DP T+ R+E +
Sbjct: 490 VYGSIEELEKDFGVKV-------TDLHRPFID--ELTRP--NPDDPTGKSTMRRIEDVFD 538
Query: 166 ACMDSGVL 173
+SG +
Sbjct: 539 CWFESGSM 546
>sp|Q92H19|SYI_RICCN Isoleucine--tRNA ligase OS=Rickettsia conorii (strain ATCC VR-613 /
Malish 7) GN=ileS PE=3 SV=2
Length = 1092
Score = 35.8 bits (81), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 58/128 (45%), Gaps = 17/128 (13%)
Query: 50 DKAVQCLNDMVTNALMHVEDCL--KYMSALRDHAIFR--FCAIPQIMAIGTLALCYNNIE 105
D+ V+ LN + HV+D L K++ RD +I R F P + + Y I+
Sbjct: 432 DRMVE-LNQQINWIPFHVKDNLFGKWLENARDWSISRNRFWGTP-LPVWKSDDPKYPRID 489
Query: 106 VFRGVVKMRRGLTAKVIDRTNNMTDVYLAFYDFSNILKPKINKNDPNATKTLSRVEAIQK 165
V+ + ++ + KV TD++ F D + +P N +DP T+ R+E +
Sbjct: 490 VYGSIEELEKDFGVKV-------TDLHRPFID--ELTRP--NPDDPTGKSTMRRIEDVFD 538
Query: 166 ACMDSGVL 173
+SG +
Sbjct: 539 CWFESGSM 546
>sp|C3PP60|SYI_RICAE Isoleucine--tRNA ligase OS=Rickettsia africae (strain ESF-5)
GN=ileS PE=3 SV=1
Length = 1092
Score = 35.8 bits (81), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 58/128 (45%), Gaps = 17/128 (13%)
Query: 50 DKAVQCLNDMVTNALMHVEDCL--KYMSALRDHAIFR--FCAIPQIMAIGTLALCYNNIE 105
D+ V+ LN + HV+D L K++ RD +I R F P + + Y I+
Sbjct: 432 DRMVE-LNQQINWIPFHVKDNLFGKWLENARDWSISRNRFWGTP-LPVWKSDDPKYPRID 489
Query: 106 VFRGVVKMRRGLTAKVIDRTNNMTDVYLAFYDFSNILKPKINKNDPNATKTLSRVEAIQK 165
V+ + ++ + KV TD++ F D + +P N +DP T+ R+E +
Sbjct: 490 VYGSIEELEKDFGVKV-------TDLHRPFID--ELTRP--NPDDPTGKSTMRRIEDVFD 538
Query: 166 ACMDSGVL 173
+SG +
Sbjct: 539 CWFESGSM 546
>sp|Q8R555|CRAC1_MOUSE Cartilage acidic protein 1 OS=Mus musculus GN=Crtac1 PE=2 SV=1
Length = 646
Score = 32.0 bits (71), Expect = 2.8, Method: Composition-based stats.
Identities = 17/72 (23%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Query: 102 NNIEVFRGVVKMRRGLTAKVIDRTNN-MTDVYLAFYDFSNILKPKINKNDPNATKTLSRV 160
+++ V RGV + G + +DRT + +Y+A Y + ++ + + DP A+ +
Sbjct: 164 DDVNVARGVASLFAGRSVACVDRTGSGRYSIYIANYAYGDVGPDALIEMDPEASDLSRGI 223
Query: 161 EAIQKACMDSGV 172
A++ ++GV
Sbjct: 224 LALRDVAAEAGV 235
>sp|Q24331|TID_DROVI Protein tumorous imaginal discs, mitochondrial OS=Drosophila
virilis GN=l(2)tid PE=2 SV=1
Length = 529
Score = 32.0 bits (71), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
Query: 122 IDRTNNMTDVYLAFYDFSNILKPKINKNDPNATKTLSRVEAIQKACMDSGVLNKRKSY 179
+ + N D+ A+Y+ + P NK+DP+A+K V + D KR+ Y
Sbjct: 87 VAKNANAKDIKKAYYELAKKYHPDTNKDDPDASKKFQDVSEAYEVLSDD---QKRREY 141
>sp|B2TJ86|IOLD_CLOBB 3D-(3,5/4)-trihydroxycyclohexane-1,2-dione hydrolase OS=Clostridium
botulinum (strain Eklund 17B / Type B) GN=iolD PE=3 SV=1
Length = 643
Score = 32.0 bits (71), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 44/107 (41%), Gaps = 24/107 (22%)
Query: 4 FLQKTNIIRDYLEDINEIPKCRMFWPREIWSKYVNKLEDLKYEENSDKAVQCLNDMVTNA 63
L+K N I Y + EI +M W E+ KL ++KYEEN D ++ N
Sbjct: 356 LLEKENYISSYKD---EIKDAKMAWKEEM-----KKLTNIKYEENFDPIIKFRN------ 401
Query: 64 LMHVEDCLKYMSALRDHAIFRFCAIPQIMAIGTLALCYNNIEVFRGV 110
++ L+ L D I Q A+G + C +N + G
Sbjct: 402 ----KESLEEFKKLTD------TTITQTSALGLIRECIDNDAIIVGA 438
>sp|Q9NQ79|CRAC1_HUMAN Cartilage acidic protein 1 OS=Homo sapiens GN=CRTAC1 PE=1 SV=2
Length = 661
Score = 31.2 bits (69), Expect = 5.5, Method: Composition-based stats.
Identities = 17/72 (23%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Query: 102 NNIEVFRGVVKMRRGLTAKVIDRTNN-MTDVYLAFYDFSNILKPKINKNDPNATKTLSRV 160
+ + V RGV + G + +DR + +Y+A Y + N+ + + DP A+ +
Sbjct: 163 DEVNVARGVASLFAGRSVACVDRKGSGRYSIYIANYAYGNVGPDALIEMDPEASDLSRGI 222
Query: 161 EAIQKACMDSGV 172
A++ ++GV
Sbjct: 223 LALRDVAAEAGV 234
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.325 0.137 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 69,014,722
Number of Sequences: 539616
Number of extensions: 2618042
Number of successful extensions: 8791
Number of sequences better than 100.0: 35
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 8744
Number of HSP's gapped (non-prelim): 36
length of query: 213
length of database: 191,569,459
effective HSP length: 113
effective length of query: 100
effective length of database: 130,592,851
effective search space: 13059285100
effective search space used: 13059285100
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 59 (27.3 bits)