BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028138
(213 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2A33|A Chain A, X-Ray Structure Of A Lysine Decarboxylase-Like Protein
From Arabidopsis Thaliana Gene At2g37210
pdb|2A33|B Chain B, X-Ray Structure Of A Lysine Decarboxylase-Like Protein
From Arabidopsis Thaliana Gene At2g37210
pdb|2Q4O|A Chain A, Ensemble Refinement Of The Crystal Structure Of A Lysine
Decarboxylase-Like Protein From Arabidopsis Thaliana
Gene At2g37210
pdb|2Q4O|B Chain B, Ensemble Refinement Of The Crystal Structure Of A Lysine
Decarboxylase-Like Protein From Arabidopsis Thaliana
Gene At2g37210
Length = 215
Score = 307 bits (786), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 145/205 (70%), Positives = 172/205 (83%), Gaps = 1/205 (0%)
Query: 5 KSRFKRICVFCGSSSGKKATYQEAAVELGKELVERKLDXXXXXXXXXXXXXXSQAVHDGG 64
KS+F+RICVFCGSS GKK++YQ+AAV+LG ELV R +D SQAVHDGG
Sbjct: 10 KSKFRRICVFCGSSQGKKSSYQDAAVDLGNELVSRNIDLVYGGGSIGLXGLVSQAVHDGG 69
Query: 65 RHVLGVIPKTLTPREITGDPVGEVKTVSDMHQRKAEMARQADAFIALPGGYGTLEELLEV 124
RHV+G+IPKTL PRE+TG+ VGEV+ V+D HQRKAE A+ +DAFIALPGGYGTLEELLEV
Sbjct: 70 RHVIGIIPKTLXPRELTGETVGEVRAVADXHQRKAEXAKHSDAFIALPGGYGTLEELLEV 129
Query: 125 ITWAQLGIHRKPVGLLNVDGFYNSLLSFVDKAVDEGFISPTARRIIISAPTAKKLVRQLE 184
ITWAQLGIH KPVGLLNVDG+YNSLLSF+DKAV+EGFISPTAR II+SAPTAK+LV++LE
Sbjct: 130 ITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVEEGFISPTAREIIVSAPTAKELVKKLE 189
Query: 185 EYVPEHDEITSKLVWE-DRLNYVSE 208
EY P H+ + +KL WE +R+ Y SE
Sbjct: 190 EYAPCHERVATKLCWEXERIGYSSE 214
>pdb|1YDH|A Chain A, X-Ray Structure Of A Lysine Decarboxylase-Like Protein
From Arabidopsis Thaliana Gene At5g11950
pdb|1YDH|B Chain B, X-Ray Structure Of A Lysine Decarboxylase-Like Protein
From Arabidopsis Thaliana Gene At5g11950
pdb|2Q4D|A Chain A, Ensemble Refinement Of The Crystal Structure Of A Lysine
Decarboxylase-Like Protein From Arabidopsis Thaliana
Gene At5g11950
pdb|2Q4D|B Chain B, Ensemble Refinement Of The Crystal Structure Of A Lysine
Decarboxylase-Like Protein From Arabidopsis Thaliana
Gene At5g11950
Length = 216
Score = 222 bits (565), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 112/199 (56%), Positives = 148/199 (74%)
Query: 2 EDAKSRFKRICVFCGSSSGKKATYQEAAVELGKELVERKLDXXXXXXXXXXXXXXSQAVH 61
++ +SRF++ICVFCGS SG + + +AA+ELG ELV+RK+D S+ V+
Sbjct: 3 DNQRSRFRKICVFCGSHSGHREVFSDAAIELGNELVKRKIDLVYGGGSVGLXGLISRRVY 62
Query: 62 DGGRHVLGVIPKTLTPREITGDPVGEVKTVSDMHQRKAEMARQADAFIALPGGYGTLEEL 121
+GG HVLG+IPK L P EI+G+ VG+V+ V+D H+RKA A++A+AFIALPGGYGT EEL
Sbjct: 63 EGGLHVLGIIPKALXPIEISGETVGDVRVVADXHERKAAXAQEAEAFIALPGGYGTXEEL 122
Query: 122 LEVITWAQLGIHRKPVGLLNVDGFYNSLLSFVDKAVDEGFISPTARRIIISAPTAKKLVR 181
LE ITW+QLGIH+K VGLLNVDG+YN+LL+ D V+EGFI P AR I++SAPTAK+L
Sbjct: 123 LEXITWSQLGIHKKTVGLLNVDGYYNNLLALFDTGVEEGFIKPGARNIVVSAPTAKELXE 182
Query: 182 QLEEYVPEHDEITSKLVWE 200
+ EEY P H + S W+
Sbjct: 183 KXEEYTPSHXHVASHESWK 201
>pdb|1T35|A Chain A, Crystal Structure Of A Hypothetical Protein Yvdd- A
Putative Lysine Decarboxylase
pdb|1T35|B Chain B, Crystal Structure Of A Hypothetical Protein Yvdd- A
Putative Lysine Decarboxylase
pdb|1T35|C Chain C, Crystal Structure Of A Hypothetical Protein Yvdd- A
Putative Lysine Decarboxylase
pdb|1T35|D Chain D, Crystal Structure Of A Hypothetical Protein Yvdd- A
Putative Lysine Decarboxylase
pdb|1T35|E Chain E, Crystal Structure Of A Hypothetical Protein Yvdd- A
Putative Lysine Decarboxylase
pdb|1T35|F Chain F, Crystal Structure Of A Hypothetical Protein Yvdd- A
Putative Lysine Decarboxylase
pdb|1T35|G Chain G, Crystal Structure Of A Hypothetical Protein Yvdd- A
Putative Lysine Decarboxylase
pdb|1T35|H Chain H, Crystal Structure Of A Hypothetical Protein Yvdd- A
Putative Lysine Decarboxylase
Length = 191
Score = 127 bits (318), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 64/178 (35%), Positives = 98/178 (55%)
Query: 9 KRICVFCGSSSGKKATYQEAAVELGKELVERKLDXXXXXXXXXXXXXXSQAVHDGGRHVL 68
K ICVF GS+ G Y+ A ELG E+ + + A+ + G +
Sbjct: 2 KTICVFAGSNPGGNEAYKRKAAELGVYXAEQGIGLVYGGSRVGLXGTIADAIXENGGTAI 61
Query: 69 GVIPKTLTPREITGDPVGEVKTVSDMHQRKAEMARQADAFIALPGGYGTLEELLEVITWA 128
GV P L E+ + E+ V+ H+RKA+ + AD FI+ PGG+GT EEL EV+ WA
Sbjct: 62 GVXPSGLFSGEVVHQNLTELIEVNGXHERKAKXSELADGFISXPGGFGTYEELFEVLCWA 121
Query: 129 QLGIHRKPVGLLNVDGFYNSLLSFVDKAVDEGFISPTARRIIISAPTAKKLVRQLEEY 186
Q+GIH+KP+GL NV+G++ V ++ EGF + + ++I S+ +L+ Q + Y
Sbjct: 122 QIGIHQKPIGLYNVNGYFEPXXKXVKYSIQEGFSNESHLKLIHSSSRPDELIEQXQNY 179
>pdb|3QUA|A Chain A, Crystal Structure Of A Putative Uncharacterized Protein
And Possible Molybdenum Cofactor Protein From
Mycobacterium Smegmatis
pdb|3QUA|B Chain B, Crystal Structure Of A Putative Uncharacterized Protein
And Possible Molybdenum Cofactor Protein From
Mycobacterium Smegmatis
Length = 199
Score = 102 bits (255), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 64/189 (33%), Positives = 91/189 (48%), Gaps = 4/189 (2%)
Query: 1 MEDAKSRFKRICVFCGSSSGKKATYQEAAVELGKELVERKLDXXXXXXXXXXXXXXSQAV 60
+++ + R +CV+C S E A E+G + R +QA
Sbjct: 15 VKEGQDRQWAVCVYCASGP-THPELLELAAEVGSSIAARGWTLVSGGGNVSAMGAVAQAA 73
Query: 61 HDGGRHVLGVIPKTLTPREITGDPVGEVKTVSDMHQRKAEMARQADAFIALPGGYGTLEE 120
G H +GVIPK L RE+ E+ M +RK EM ++DAFIALPGG GTLEE
Sbjct: 74 RAKGGHTVGVIPKALVHRELADVDAAELIVTDTMRERKREMEHRSDAFIALPGGIGTLEE 133
Query: 121 LLEVITWAQLGIHRKPVGLLNVDGFYNSLLSFVDKAVDEGFISPTARRIIISAPTAKKLV 180
E T LG+H KP+ LL+ G Y+ LL+++ V G++S +R + S +
Sbjct: 134 FFEAWTAGYLGMHDKPLILLDPFGHYDGLLTWLRGLVPTGYVS---QRAMDSLVVVDNVE 190
Query: 181 RQLEEYVPE 189
LE PE
Sbjct: 191 AALEACAPE 199
>pdb|3SBX|A Chain A, Crystal Structure Of A Putative Uncharacterized Protein
From Mycobacterium Marinum Bound To Adenosine
5'-Monophosphate Amp
pdb|3SBX|B Chain B, Crystal Structure Of A Putative Uncharacterized Protein
From Mycobacterium Marinum Bound To Adenosine
5'-Monophosphate Amp
pdb|3SBX|C Chain C, Crystal Structure Of A Putative Uncharacterized Protein
From Mycobacterium Marinum Bound To Adenosine
5'-Monophosphate Amp
pdb|3SBX|D Chain D, Crystal Structure Of A Putative Uncharacterized Protein
From Mycobacterium Marinum Bound To Adenosine
5'-Monophosphate Amp
pdb|3SBX|E Chain E, Crystal Structure Of A Putative Uncharacterized Protein
From Mycobacterium Marinum Bound To Adenosine
5'-Monophosphate Amp
pdb|3SBX|F Chain F, Crystal Structure Of A Putative Uncharacterized Protein
From Mycobacterium Marinum Bound To Adenosine
5'-Monophosphate Amp
pdb|3SBX|G Chain G, Crystal Structure Of A Putative Uncharacterized Protein
From Mycobacterium Marinum Bound To Adenosine
5'-Monophosphate Amp
pdb|3SBX|H Chain H, Crystal Structure Of A Putative Uncharacterized Protein
From Mycobacterium Marinum Bound To Adenosine
5'-Monophosphate Amp
Length = 189
Score = 80.5 bits (197), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 46/116 (39%), Positives = 68/116 (58%), Gaps = 1/116 (0%)
Query: 57 SQAVHDGGRHVLGVIPKTLTPREITGDPVGEVKTVSDMHQRKAEMARQADAFIALPGGYG 116
S A G +GVIPK L RE+ E+ M +RK M +A+AFI LPGG G
Sbjct: 61 SSAARAHGGWTVGVIPKMLVHRELADHDADELVVTETMWERKQVMEDRANAFITLPGGVG 120
Query: 117 TLEELLEVITWAQLGIHRKPVGLLNVDGFYNSLLSFVDKAVDEGFISPTA-RRIII 171
TL+ELL+V T LG+H K + +L+ G ++ L +++ + D G++S TA R+I+
Sbjct: 121 TLDELLDVWTEGYLGMHDKSIVVLDPWGHFDGLRAWLSELADTGYVSRTAMERLIV 176
>pdb|1WEK|A Chain A, Crystal Structure Of The Conserved Hypothetical Protein
Tt1465 From Thermus Thermophilus Hb8
pdb|1WEK|B Chain B, Crystal Structure Of The Conserved Hypothetical Protein
Tt1465 From Thermus Thermophilus Hb8
pdb|1WEK|C Chain C, Crystal Structure Of The Conserved Hypothetical Protein
Tt1465 From Thermus Thermophilus Hb8
pdb|1WEK|D Chain D, Crystal Structure Of The Conserved Hypothetical Protein
Tt1465 From Thermus Thermophilus Hb8
pdb|1WEK|E Chain E, Crystal Structure Of The Conserved Hypothetical Protein
Tt1465 From Thermus Thermophilus Hb8
pdb|1WEK|F Chain F, Crystal Structure Of The Conserved Hypothetical Protein
Tt1465 From Thermus Thermophilus Hb8
Length = 217
Score = 47.8 bits (112), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 75/180 (41%), Gaps = 6/180 (3%)
Query: 11 ICVFCGSSSGKKATYQEAAVELGKELVERKLDXXXXXXXXXXXXXXSQAVHDGGRHVLGV 70
+ VF + G+ EA LG+ L E A GG + V
Sbjct: 40 VSVFGSARFGEGHPAYEAGYRLGRALAEAGFGVVTGGGPGVXEAVNRGAYEAGG---VSV 96
Query: 71 IPKTLTPREITGDPV-GEVKTVSDMHQRKAEMARQADAFIALPGGYGTLEELLEVITWAQ 129
P E +P ++ RK R A F+ LPGG+GTL+EL EV+ Q
Sbjct: 97 GLNIELPHEQKPNPYQTHALSLRYFFVRKVLFVRYAVGFVFLPGGFGTLDELSEVLVLLQ 156
Query: 130 L-GIHRKPVGLLNVDGFYNSLLSFVDKAVDEGFISPTARRIIISAPTAKKLVRQLEEYVP 188
+HR PV LL+ G++ L+ ++ D+ + P ++ +++V+ L+ P
Sbjct: 157 TEKVHRFPVFLLD-RGYWEGLVRWLAFLRDQKAVGPEDLQLFRLTDEPEEVVQALKAEAP 215
>pdb|1WEH|A Chain A, Crystal Structure Of The Conserved Hypothetical Protein
Tt1887 From Thermus Thermophilus Hb8
pdb|1WEH|B Chain B, Crystal Structure Of The Conserved Hypothetical Protein
Tt1887 From Thermus Thermophilus Hb8
Length = 171
Score = 37.0 bits (84), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 44/95 (46%), Gaps = 3/95 (3%)
Query: 57 SQAVHDGGRHVLGVIPKTLTPREITGDPVGEVK-TVSDMHQRKAEMARQADAFIALPGGY 115
++ V G V+GV P +P +++ + + QR + ++ALPGG
Sbjct: 49 ARGVKAKGGLVVGVTAPAFFPERRGPNPFVDLELPAATLPQRIGRLLDLGAGYLALPGGV 108
Query: 116 GTLEELLEVITWAQLGIHRKPVGLLNVDGFYNSLL 150
GTL EL V+ W L + R L VD ++ LL
Sbjct: 109 GTLAEL--VLAWNLLYLRRGVGRPLAVDPYWLGLL 141
>pdb|3BQ9|A Chain A, Crystal Structure Of Predicted Nucleotide-Binding Protein
From Idiomarina Baltica Os145
pdb|3BQ9|B Chain B, Crystal Structure Of Predicted Nucleotide-Binding Protein
From Idiomarina Baltica Os145
Length = 460
Score = 35.0 bits (79), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Query: 62 DGGRHVLGVIPKTLTPREITGDPVGEVKTVSDMHQRKAEMARQADAFIALPGGYGTLEEL 121
+GGR+ LG+ + E V E+ + D+ +R R A + PGG GT EEL
Sbjct: 204 EGGRY-LGLTEPGIIAAEPPNPIVNELVILPDIEKRLEAFVRCAHGIVIFPGGAGTAEEL 262
Query: 122 LEVI 125
L ++
Sbjct: 263 LYLL 266
>pdb|2PMB|A Chain A, Crystal Structure Of Predicted Nucleotide-binding Protein
From Vibrio Cholerae
pdb|2PMB|B Chain B, Crystal Structure Of Predicted Nucleotide-binding Protein
From Vibrio Cholerae
pdb|2PMB|C Chain C, Crystal Structure Of Predicted Nucleotide-binding Protein
From Vibrio Cholerae
pdb|2PMB|D Chain D, Crystal Structure Of Predicted Nucleotide-binding Protein
From Vibrio Cholerae
pdb|3GH1|A Chain A, Crystal Structure Of Predicted Nucleotide-Binding Protein
From Vibrio Cholerae
pdb|3GH1|B Chain B, Crystal Structure Of Predicted Nucleotide-Binding Protein
From Vibrio Cholerae
pdb|3GH1|C Chain C, Crystal Structure Of Predicted Nucleotide-Binding Protein
From Vibrio Cholerae
pdb|3GH1|D Chain D, Crystal Structure Of Predicted Nucleotide-Binding Protein
From Vibrio Cholerae
Length = 462
Score = 34.3 bits (77), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 40/103 (38%), Gaps = 16/103 (15%)
Query: 68 LGVIPKTLTPREITGDPVGEVKTVSDMHQRKAEMARQADAFIALPGGYGTLEELLEVITW 127
LG+ ++ E V E+ D+ +R R A I PGG GT EELL +
Sbjct: 211 LGLTEPSIIAAEPPNPIVNELVIXPDIEKRLEAFVRXAHGIIIFPGGPGTAEELLYI--- 267
Query: 128 AQLGIHRKP-----------VGLLNVDGFYNSLLSFVDKAVDE 159
LGI P G + ++ SL F+ + E
Sbjct: 268 --LGIXXHPENADQPXPIVLTGPKQSEAYFRSLDKFITDTLGE 308
>pdb|1GYP|A Chain A, Crystal Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Leishmania Mexicana: Implications For
Structure-Based Drug Design And A New Position For The
Inorganic Phosphate Binding Site
pdb|1GYP|B Chain B, Crystal Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Leishmania Mexicana: Implications For
Structure-Based Drug Design And A New Position For The
Inorganic Phosphate Binding Site
pdb|1GYP|C Chain C, Crystal Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Leishmania Mexicana: Implications For
Structure-Based Drug Design And A New Position For The
Inorganic Phosphate Binding Site
pdb|1GYP|D Chain D, Crystal Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Leishmania Mexicana: Implications For
Structure-Based Drug Design And A New Position For The
Inorganic Phosphate Binding Site
pdb|1GYQ|A Chain A, Crystal Structure Of Glycosomal Glyceraldehyde From
Leishmania Mexicana In Complex With N6-Benzyl-Nad
pdb|1GYQ|B Chain B, Crystal Structure Of Glycosomal Glyceraldehyde From
Leishmania Mexicana In Complex With N6-Benzyl-Nad
pdb|1GYQ|C Chain C, Crystal Structure Of Glycosomal Glyceraldehyde From
Leishmania Mexicana In Complex With N6-Benzyl-Nad
pdb|1GYQ|D Chain D, Crystal Structure Of Glycosomal Glyceraldehyde From
Leishmania Mexicana In Complex With N6-Benzyl-Nad
Length = 358
Score = 33.9 bits (76), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 31/66 (46%), Gaps = 5/66 (7%)
Query: 136 PVGLLNVDGFYNSLLSFVDKAVDEGFISPTARRIIISAPT---AKKLVRQLE--EYVPEH 190
P G L VD S F DK EG I A++++ISAP AK +V + EY P
Sbjct: 98 PWGKLGVDYVIESTGLFTDKLKAEGHIKGGAKKVVISAPASGGAKTIVMGVNQHEYSPAS 157
Query: 191 DEITSK 196
+ S
Sbjct: 158 HHVVSN 163
>pdb|1A7K|A Chain A, Glycosomal Glyceraldehyde-3-Phosphate Dehydrogenase In A
Monoclinic Crystal Form
pdb|1A7K|B Chain B, Glycosomal Glyceraldehyde-3-Phosphate Dehydrogenase In A
Monoclinic Crystal Form
pdb|1A7K|C Chain C, Glycosomal Glyceraldehyde-3-Phosphate Dehydrogenase In A
Monoclinic Crystal Form
pdb|1A7K|D Chain D, Glycosomal Glyceraldehyde-3-Phosphate Dehydrogenase In A
Monoclinic Crystal Form
pdb|1I32|A Chain A, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I32|B Chain B, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I32|C Chain C, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I32|D Chain D, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I32|E Chain E, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I32|F Chain F, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I33|A Chain A, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I33|B Chain B, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I33|C Chain C, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I33|D Chain D, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I33|E Chain E, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I33|F Chain F, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
Length = 360
Score = 33.9 bits (76), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 31/66 (46%), Gaps = 5/66 (7%)
Query: 136 PVGLLNVDGFYNSLLSFVDKAVDEGFISPTARRIIISAPT---AKKLVRQLE--EYVPEH 190
P G L VD S F DK EG I A++++ISAP AK +V + EY P
Sbjct: 98 PWGKLGVDYVIESTGLFTDKLKAEGHIKGGAKKVVISAPASGGAKTIVMGVNQHEYSPAS 157
Query: 191 DEITSK 196
+ S
Sbjct: 158 HHVVSN 163
>pdb|1K3T|A Chain A, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi Complexed With
Chalepin, A Coumarin Derivative Inhibitor
pdb|1K3T|B Chain B, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi Complexed With
Chalepin, A Coumarin Derivative Inhibitor
pdb|1K3T|C Chain C, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi Complexed With
Chalepin, A Coumarin Derivative Inhibitor
pdb|1K3T|D Chain D, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi Complexed With
Chalepin, A Coumarin Derivative Inhibitor
pdb|1ML3|A Chain A, Evidences For A Flip-Flop Catalytic Mechanism Of
Trypanosoma Cruzi Glyceraldehyde-3-Phosphate
Dehydrogenase, From Its Crystal Structure In Complex
With Reacted Irreversible Inhibitor
2-(2-Phosphono-Ethyl)-Acrylic Acid 4-Nitro-Phenyl Ester
pdb|1ML3|B Chain B, Evidences For A Flip-Flop Catalytic Mechanism Of
Trypanosoma Cruzi Glyceraldehyde-3-Phosphate
Dehydrogenase, From Its Crystal Structure In Complex
With Reacted Irreversible Inhibitor
2-(2-Phosphono-Ethyl)-Acrylic Acid 4-Nitro-Phenyl Ester
pdb|1ML3|C Chain C, Evidences For A Flip-Flop Catalytic Mechanism Of
Trypanosoma Cruzi Glyceraldehyde-3-Phosphate
Dehydrogenase, From Its Crystal Structure In Complex
With Reacted Irreversible Inhibitor
2-(2-Phosphono-Ethyl)-Acrylic Acid 4-Nitro-Phenyl Ester
pdb|1ML3|D Chain D, Evidences For A Flip-Flop Catalytic Mechanism Of
Trypanosoma Cruzi Glyceraldehyde-3-Phosphate
Dehydrogenase, From Its Crystal Structure In Complex
With Reacted Irreversible Inhibitor
2-(2-Phosphono-Ethyl)-Acrylic Acid 4-Nitro-Phenyl Ester
pdb|1QXS|C Chain C, Crystal Structure Of Trypanosoma Cruzi Glyceraldehyde-3-
Phosphate Dehydrogenase Complexed With An Analogue Of
1,3- Bisphospho-D-Glyceric Acid
pdb|1QXS|D Chain D, Crystal Structure Of Trypanosoma Cruzi Glyceraldehyde-3-
Phosphate Dehydrogenase Complexed With An Analogue Of
1,3- Bisphospho-D-Glyceric Acid
pdb|1QXS|A Chain A, Crystal Structure Of Trypanosoma Cruzi Glyceraldehyde-3-
Phosphate Dehydrogenase Complexed With An Analogue Of
1,3- Bisphospho-D-Glyceric Acid
pdb|1QXS|B Chain B, Crystal Structure Of Trypanosoma Cruzi Glyceraldehyde-3-
Phosphate Dehydrogenase Complexed With An Analogue Of
1,3- Bisphospho-D-Glyceric Acid
pdb|3DMT|A Chain A, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi In Complex With The
Irreversible Iodoacetate Inhibitor
pdb|3DMT|B Chain B, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi In Complex With The
Irreversible Iodoacetate Inhibitor
pdb|3DMT|D Chain D, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi In Complex With The
Irreversible Iodoacetate Inhibitor
pdb|3IDS|C Chain C, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi In Complex With The
Irreversible Iodoacetamide Inhibitor
pdb|3IDS|D Chain D, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi In Complex With The
Irreversible Iodoacetamide Inhibitor
pdb|3IDS|A Chain A, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi In Complex With The
Irreversible Iodoacetamide Inhibitor
pdb|3IDS|B Chain B, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi In Complex With The
Irreversible Iodoacetamide Inhibitor
Length = 359
Score = 33.1 bits (74), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 31/66 (46%), Gaps = 5/66 (7%)
Query: 136 PVGLLNVDGFYNSLLSFVDKAVDEGFISPTARRIIISAPT---AKKLVRQLE--EYVPEH 190
P G L V+ S F KA EG + AR+++ISAP AK LV + EY P
Sbjct: 98 PWGKLGVEYVIESTGLFTAKAAAEGHLRGGARKVVISAPASGGAKTLVMGVNHHEYNPSE 157
Query: 191 DEITSK 196
+ S
Sbjct: 158 HHVVSN 163
>pdb|3DMT|C Chain C, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi In Complex With The
Irreversible Iodoacetate Inhibitor
Length = 359
Score = 33.1 bits (74), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 31/66 (46%), Gaps = 5/66 (7%)
Query: 136 PVGLLNVDGFYNSLLSFVDKAVDEGFISPTARRIIISAPT---AKKLVRQLE--EYVPEH 190
P G L V+ S F KA EG + AR+++ISAP AK LV + EY P
Sbjct: 98 PWGKLGVEYVIESTGLFTAKAAAEGHLRGGARKVVISAPASGGAKTLVMGVNHHEYNPSE 157
Query: 191 DEITSK 196
+ S
Sbjct: 158 HHVVSN 163
>pdb|1RCU|A Chain A, X-Ray Structure Of Tm1055 Northeast Structural Genomics
Consortium Target Vt76
pdb|1RCU|B Chain B, X-Ray Structure Of Tm1055 Northeast Structural Genomics
Consortium Target Vt76
pdb|1RCU|C Chain C, X-Ray Structure Of Tm1055 Northeast Structural Genomics
Consortium Target Vt76
pdb|1RCU|D Chain D, X-Ray Structure Of Tm1055 Northeast Structural Genomics
Consortium Target Vt76
Length = 195
Score = 33.1 bits (74), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 43/99 (43%), Gaps = 13/99 (13%)
Query: 57 SQAVHDGGRHVLGVIPKTLTPREITGDPVGEV--KTVSDMHQRKAEMARQADAFIALPGG 114
SQ V + G V+G++P E G+P V KT D R + R AD +++ G
Sbjct: 74 SQGVREAGGTVVGILPD-----EEAGNPYLSVAVKTGLDFQXRSFVLLRNADVVVSIGGE 128
Query: 115 YGTLEELLEVITWAQLGIHRKPVGLLNVDGFYNSLLSFV 153
GT E+L KPV LL G + +S V
Sbjct: 129 IGTAIEILGAYALG------KPVILLRGTGGWTDRISQV 161
>pdb|2X0N|A Chain A, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Brucei Determined From
Laue Data
pdb|2X0N|B Chain B, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Brucei Determined From
Laue Data
pdb|2X0N|O Chain O, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Brucei Determined From
Laue Data
pdb|2X0N|P Chain P, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Brucei Determined From
Laue Data
pdb|2X0N|Q Chain Q, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Brucei Determined From
Laue Data
pdb|2X0N|R Chain R, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Brucei Determined From
Laue Data
Length = 359
Score = 28.1 bits (61), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 29/66 (43%), Gaps = 5/66 (7%)
Query: 136 PVGLLNVDGFYNSLLSFVDKAVDEGFISPTARRIIISAPT---AKKLVRQL--EEYVPEH 190
P G L V+ S F K+ EG + AR+++ISAP AK V + Y P
Sbjct: 98 PWGKLGVEYVIESTGLFTVKSAAEGHLRGGARKVVISAPASGGAKTFVMGVNHNNYNPRE 157
Query: 191 DEITSK 196
+ S
Sbjct: 158 QHVVSN 163
>pdb|1NKW|X Chain X, Crystal Structure Of The Large Ribosomal Subunit From
Deinococcus Radiodurans
pdb|1NWX|X Chain X, Complex Of The Large Ribosomal Subunit From Deinococcus
Radiodurans With Abt-773
pdb|1NWY|X Chain X, Complex Of The Large Ribosomal Subunit From Deinococcus
Radiodurans With Azithromycin
pdb|1PNU|X Chain X, Crystal Structure Of A Streptomycin Dependent Ribosome
From Escherichia Coli, 50s Subunit Of 70s Ribosome. This
File, 1pnu, Contains Only Molecules Of The 50s Ribosomal
Subunit. The 30s Subunit, Mrna, P-Site Trna, And A-Site
Trna Are In The Pdb File 1pns.
pdb|1PNY|X Chain X, Crystal Structure Of The Wild Type Ribosome From E. Coli,
50s Subunit Of 70s Ribosome. This File, 1pny, Contains
Only Molecules Of The 50s Ribosomal Subunit. The 30s
Subunit Is In The Pdb File 1pnx.
pdb|1SM1|X Chain X, Complex Of The Large Ribosomal Subunit From Deinococcus
Radiodurans With Quinupristin And Dalfopristin
pdb|1VOR|Z Chain Z, Crystal Structure Of Five 70s Ribosomes From Escherichia
Coli In Complex With Protein Y. This File Contains The
50s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Five 70s Ribosomes And Is Described
In Remark 400.
pdb|1VOU|Z Chain Z, Crystal Structure Of Five 70s Ribosomes From Escherichia
Coli In Complex With Protein Y. This File Contains The
50s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Five 70s Ribosomes And Is Described
In Remark 400.
pdb|1VOW|Z Chain Z, Crystal Structure Of Five 70s Ribosomes From Escherichia
Coli In Complex With Protein Y. This File Contains The
50s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Five 70s Ribosomes And Is Described
In Remark 400.
pdb|1VOY|Z Chain Z, Crystal Structure Of Five 70s Ribosomes From Escherichia
Coli In Complex With Protein Y. This File Contains The
50s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Five 70s Ribosomes And Is Described
In Remark 400.
pdb|1VP0|Z Chain Z, Crystal Structure Of Five 70s Ribosomes From Escherichia
Coli In Complex With Protein Y. This File Contains The
50s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Five 70s Ribosomes And Is Described
In Remark 400.
pdb|1XBP|X Chain X, Inhibition Of Peptide Bond Formation By Pleuromutilins:
The Structure Of The 50s Ribosomal Subunit From
Deinococcus Radiodurans In Complex With Tiamulin
pdb|2ZJP|W Chain W, Thiopeptide Antibiotic Nosiheptide Bound To The Large
Ribosomal Subunit Of Deinococcus Radiodurans
pdb|2ZJQ|W Chain W, Interaction Of L7 With L11 Induced By Microccocin Binding
To The Deinococcus Radiodurans 50s Subunit
pdb|2ZJR|W Chain W, Refined Native Structure Of The Large Ribosomal Subunit
(50s) From Deinococcus Radiodurans
pdb|3CF5|W Chain W, Thiopeptide Antibiotic Thiostrepton Bound To The Large
Ribosomal Subunit Of Deinococcus Radiodurans
pdb|3DLL|W Chain W, The Oxazolidinone Antibiotics Perturb The Ribosomal
Peptidyl-Transferase Center And Effect Trna Positioning
pdb|3PIO|W Chain W, Crystal Structure Of The Synergistic Antibiotic Pair
Lankamycin And Lankacidin In Complex With The Large
Ribosomal Subunit
pdb|3PIP|W Chain W, Crystal Structure Of The Synergistic Antibiotic Pair
Lankamycin And Lankacidin In Complex With The Large
Ribosomal Subunit
Length = 55
Score = 28.1 bits (61), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 25/47 (53%)
Query: 78 REITGDPVGEVKTVSDMHQRKAEMARQADAFIALPGGYGTLEELLEV 124
R + G P +VKTV + RK +R+ A+ G T++ LLEV
Sbjct: 7 RSVIGRPGNQVKTVQALGLRKIGDSREVSDTPAVRGMVKTVKHLLEV 53
>pdb|7PCK|A Chain A, Crystal Structure Of Wild Type Human Procathepsin K
pdb|7PCK|B Chain B, Crystal Structure Of Wild Type Human Procathepsin K
pdb|7PCK|C Chain C, Crystal Structure Of Wild Type Human Procathepsin K
pdb|7PCK|D Chain D, Crystal Structure Of Wild Type Human Procathepsin K
pdb|1BY8|A Chain A, The Crystal Structure Of Human Procathepsin K
Length = 314
Score = 27.3 bits (59), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 17/24 (70%)
Query: 184 EEYVPEHDEITSKLVWEDRLNYVS 207
++Y + DEI+ +L+WE L Y+S
Sbjct: 20 KQYNNKVDEISRRLIWEKNLKYIS 43
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.134 0.383
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,953,610
Number of Sequences: 62578
Number of extensions: 226201
Number of successful extensions: 939
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 924
Number of HSP's gapped (non-prelim): 20
length of query: 213
length of database: 14,973,337
effective HSP length: 95
effective length of query: 118
effective length of database: 9,028,427
effective search space: 1065354386
effective search space used: 1065354386
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (23.5 bits)