Query 028138
Match_columns 213
No_of_seqs 143 out of 1177
Neff 6.6
Searched_HMMs 46136
Date Fri Mar 29 06:49:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028138.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028138hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR00730 conserved hypothetic 100.0 1.1E-53 2.4E-58 352.7 21.0 178 9-186 1-178 (178)
2 COG1611 Predicted Rossmann fol 100.0 1.2E-44 2.6E-49 304.8 19.8 184 5-189 11-198 (205)
3 TIGR00725 conserved hypothetic 100.0 1.8E-41 3.8E-46 275.4 18.7 157 8-183 1-158 (159)
4 PF03641 Lysine_decarbox: Poss 100.0 2.4E-38 5.2E-43 249.9 15.0 131 53-183 1-133 (133)
5 TIGR00732 dprA DNA protecting 99.7 5.1E-15 1.1E-19 126.1 17.1 155 9-182 45-219 (220)
6 PF02481 DNA_processg_A: DNA r 99.3 1.9E-11 4.2E-16 103.6 13.3 143 8-160 44-206 (212)
7 PRK10736 hypothetical protein; 99.3 6.5E-11 1.4E-15 107.9 16.4 158 9-185 108-285 (374)
8 COG0758 Smf Predicted Rossmann 99.1 2.3E-09 5E-14 97.0 16.0 159 9-186 112-289 (350)
9 PF12694 MoCo_carrier: Putativ 96.8 0.026 5.7E-07 45.3 11.3 93 43-142 1-98 (145)
10 KOG3614 Ca2+/Mg2+-permeable ca 95.3 0.35 7.7E-06 50.6 13.4 157 7-167 117-328 (1381)
11 PF05014 Nuc_deoxyrib_tr: Nucl 94.9 0.064 1.4E-06 40.5 5.2 47 91-143 48-98 (113)
12 PF13528 Glyco_trans_1_3: Glyc 93.9 1.8 3.9E-05 37.5 13.0 123 39-185 192-316 (318)
13 PF11071 DUF2872: Protein of u 93.9 0.71 1.5E-05 36.6 9.1 71 95-184 63-137 (141)
14 TIGR01133 murG undecaprenyldip 92.1 7.5 0.00016 33.8 15.8 73 100-188 246-320 (348)
15 PLN02605 monogalactosyldiacylg 92.1 4.4 9.5E-05 36.6 13.1 72 97-188 275-346 (382)
16 PF06258 Mito_fiss_Elm1: Mitoc 91.7 9.6 0.00021 34.2 14.9 77 101-186 225-308 (311)
17 COG3660 Predicted nucleoside-d 91.6 4.1 9E-05 36.3 11.6 132 6-165 159-297 (329)
18 PF06908 DUF1273: Protein of u 91.4 2.8 6E-05 34.7 10.0 132 8-142 1-168 (177)
19 TIGR03646 YtoQ_fam YtoQ family 91.3 4.9 0.00011 32.0 10.7 71 95-184 66-140 (144)
20 COG0707 MurG UDP-N-acetylgluco 91.2 12 0.00026 34.3 15.6 83 91-189 239-324 (357)
21 PRK13609 diacylglycerol glucos 90.3 7.3 0.00016 34.8 12.7 76 93-188 262-337 (380)
22 PRK10565 putative carbohydrate 90.2 1.3 2.9E-05 42.3 8.1 127 39-184 254-384 (508)
23 PF10686 DUF2493: Protein of u 90.2 3.8 8.3E-05 28.8 8.5 62 9-73 4-66 (71)
24 cd03784 GT1_Gtf_like This fami 90.1 6.5 0.00014 35.3 12.1 72 100-188 300-371 (401)
25 PRK13608 diacylglycerol glucos 89.8 5.7 0.00012 36.1 11.6 75 93-187 262-336 (391)
26 TIGR00661 MJ1255 conserved hyp 89.7 8.5 0.00018 33.9 12.3 104 40-161 189-293 (321)
27 TIGR01426 MGT glycosyltransfer 89.6 8.9 0.00019 34.5 12.7 70 101-188 288-358 (392)
28 cd03785 GT1_MurG MurG is an N- 89.5 13 0.00029 32.2 15.2 77 96-188 244-323 (350)
29 PRK12446 undecaprenyldiphospho 87.9 20 0.00044 32.3 14.0 73 100-187 248-323 (352)
30 PRK00025 lpxB lipid-A-disaccha 86.2 6.9 0.00015 34.8 9.6 31 99-140 256-286 (380)
31 PF04101 Glyco_tran_28_C: Glyc 85.3 2.2 4.8E-05 33.7 5.4 34 99-142 67-100 (167)
32 COG4671 Predicted glycosyl tra 84.1 19 0.00041 33.4 11.3 144 37-198 217-374 (400)
33 PRK13660 hypothetical protein; 83.4 25 0.00054 29.3 11.7 108 30-141 33-167 (182)
34 TIGR03590 PseG pseudaminic aci 82.2 20 0.00043 31.2 10.6 38 94-142 231-268 (279)
35 COG2185 Sbm Methylmalonyl-CoA 81.4 4.4 9.5E-05 32.5 5.5 46 25-71 25-70 (143)
36 COG1597 LCB5 Sphingosine kinas 79.7 3.7 8E-05 36.6 5.1 46 28-74 46-92 (301)
37 TIGR00215 lpxB lipid-A-disacch 77.1 58 0.0013 29.6 12.9 76 101-189 264-347 (385)
38 COG3613 Nucleoside 2-deoxyribo 76.7 23 0.00049 29.3 8.5 52 96-153 60-119 (172)
39 TIGR00196 yjeF_cterm yjeF C-te 75.0 19 0.00041 31.1 8.2 42 99-144 87-128 (272)
40 PF13607 Succ_CoA_lig: Succiny 68.8 24 0.00052 27.8 6.8 115 40-184 3-136 (138)
41 PRK00696 sucC succinyl-CoA syn 67.1 1E+02 0.0022 28.1 13.5 71 105-186 311-384 (388)
42 PRK13337 putative lipid kinase 66.5 15 0.00033 32.2 5.8 44 29-73 46-91 (304)
43 PRK00726 murG undecaprenyldiph 66.3 91 0.002 27.3 14.8 80 92-188 240-323 (357)
44 COG1832 Predicted CoA-binding 64.2 13 0.00028 29.8 4.3 35 6-45 14-48 (140)
45 PRK08105 flavodoxin; Provision 64.1 9.3 0.0002 30.3 3.6 34 8-44 1-34 (149)
46 COG1057 NadD Nicotinic acid mo 64.0 10 0.00022 31.9 4.0 34 7-40 1-34 (197)
47 PRK13055 putative lipid kinase 64.0 16 0.00035 32.7 5.6 44 29-73 48-93 (334)
48 PRK05749 3-deoxy-D-manno-octul 63.3 1.2E+02 0.0025 27.5 16.9 82 87-188 303-387 (425)
49 PRK02645 ppnK inorganic polyph 61.9 13 0.00029 33.1 4.5 107 7-161 2-117 (305)
50 PF00781 DAGK_cat: Diacylglyce 61.5 12 0.00026 28.5 3.7 43 30-73 43-90 (130)
51 PRK09004 FMN-binding protein M 60.9 10 0.00022 30.0 3.3 34 8-44 1-34 (146)
52 KOG4022 Dihydropteridine reduc 60.3 57 0.0012 27.3 7.6 70 39-115 3-83 (236)
53 cd06259 YdcF-like YdcF-like. Y 59.1 46 0.001 25.6 6.7 15 168-182 96-110 (150)
54 cd00411 Asparaginase Asparagin 58.1 27 0.00058 31.4 5.8 36 104-142 78-113 (323)
55 smart00046 DAGKc Diacylglycero 57.4 13 0.00028 28.3 3.3 31 108-140 52-84 (124)
56 PRK11914 diacylglycerol kinase 57.3 1.2E+02 0.0026 26.5 9.8 18 108-125 67-84 (306)
57 TIGR00060 L18_bact ribosomal p 56.9 29 0.00063 26.7 5.0 40 26-65 65-112 (114)
58 PRK02155 ppnK NAD(+)/NADH kina 56.5 67 0.0015 28.5 8.0 62 5-70 2-93 (291)
59 PRK11914 diacylglycerol kinase 56.3 22 0.00049 31.1 5.0 44 28-73 52-96 (306)
60 PRK05723 flavodoxin; Provision 55.8 14 0.0003 29.5 3.2 33 9-44 1-33 (151)
61 KOG2968 Predicted esterase of 55.8 7.6 0.00016 39.9 2.0 43 31-75 830-883 (1158)
62 COG0063 Predicted sugar kinase 55.8 1.2E+02 0.0026 27.0 9.5 130 39-184 32-168 (284)
63 TIGR00519 asnASE_I L-asparagin 55.3 29 0.00063 31.4 5.6 50 103-155 76-130 (336)
64 TIGR03702 lip_kinase_YegS lipi 54.9 26 0.00056 30.6 5.1 44 29-73 41-88 (293)
65 cd03786 GT1_UDP-GlcNAc_2-Epime 54.8 1.4E+02 0.0031 25.9 15.4 69 96-189 269-337 (363)
66 COG0549 ArcC Carbamate kinase 53.7 32 0.0007 30.9 5.4 61 31-114 175-235 (312)
67 PRK00861 putative lipid kinase 53.4 25 0.00054 30.7 4.8 43 29-73 46-89 (300)
68 COG1819 Glycosyl transferases, 52.8 97 0.0021 28.7 8.8 95 36-148 234-332 (406)
69 cd03808 GT1_cap1E_like This fa 52.6 51 0.0011 27.4 6.5 69 100-187 259-327 (359)
70 PF00861 Ribosomal_L18p: Ribos 51.2 60 0.0013 24.9 6.0 39 27-65 71-117 (119)
71 COG0593 DnaA ATPase involved i 51.1 66 0.0014 30.2 7.3 103 27-140 96-214 (408)
72 PRK14569 D-alanyl-alanine synt 50.7 41 0.00088 29.5 5.7 37 9-45 4-40 (296)
73 PRK13054 lipid kinase; Reviewe 50.5 34 0.00075 29.9 5.2 43 30-73 46-92 (300)
74 COG1064 AdhP Zn-dependent alco 49.8 49 0.0011 30.2 6.1 140 40-185 168-326 (339)
75 PF01820 Dala_Dala_lig_N: D-al 49.8 17 0.00038 27.6 2.8 36 9-44 1-36 (117)
76 cd03825 GT1_wcfI_like This fam 49.8 93 0.002 26.5 7.8 71 97-188 257-329 (365)
77 cd07025 Peptidase_S66 LD-Carbo 49.7 1.5E+02 0.0032 25.9 9.1 34 104-138 62-95 (282)
78 cd01171 YXKO-related B.subtili 49.7 63 0.0014 27.2 6.6 41 101-145 74-114 (254)
79 cd07062 Peptidase_S66_mccF_lik 49.6 1.9E+02 0.0041 25.6 10.5 33 105-138 67-99 (308)
80 cd03820 GT1_amsD_like This fam 49.4 1.1E+02 0.0025 25.1 8.1 72 97-188 245-318 (348)
81 TIGR00640 acid_CoA_mut_C methy 49.2 65 0.0014 25.1 6.1 45 25-70 15-59 (132)
82 PF00781 DAGK_cat: Diacylglyce 48.7 27 0.00058 26.5 3.8 39 101-141 48-89 (130)
83 cd03804 GT1_wbaZ_like This fam 48.6 1E+02 0.0022 26.7 7.9 72 97-189 254-326 (351)
84 PRK07313 phosphopantothenoylcy 48.5 27 0.00058 28.8 4.0 89 101-189 74-180 (182)
85 PRK13059 putative lipid kinase 48.3 44 0.00096 29.2 5.6 32 105-140 57-88 (295)
86 PHA03392 egt ecdysteroid UDP-g 48.2 2.5E+02 0.0055 26.8 11.9 159 5-186 261-429 (507)
87 cd03795 GT1_like_4 This family 48.2 1.1E+02 0.0024 26.0 8.0 73 96-188 255-331 (357)
88 PRK12361 hypothetical protein; 47.7 37 0.00081 32.5 5.4 43 29-73 286-329 (547)
89 PLN02958 diacylglycerol kinase 47.5 39 0.00085 32.1 5.4 44 29-73 157-207 (481)
90 PF02608 Bmp: Basic membrane p 47.3 33 0.00072 30.2 4.6 58 8-71 161-220 (306)
91 cd03794 GT1_wbuB_like This fam 46.7 96 0.0021 26.1 7.3 72 97-187 287-363 (394)
92 TIGR00334 5S_RNA_mat_M5 ribonu 46.5 1.7E+02 0.0037 24.3 9.1 113 87-203 4-125 (174)
93 PRK01372 ddl D-alanine--D-alan 45.9 37 0.00081 29.4 4.7 37 9-45 5-41 (304)
94 TIGR00421 ubiX_pad polyprenyl 45.5 43 0.00093 27.6 4.7 81 104-185 75-165 (181)
95 cd04951 GT1_WbdM_like This fam 45.3 88 0.0019 26.6 6.9 68 99-187 257-324 (360)
96 KOG3349 Predicted glycosyltran 45.0 60 0.0013 26.7 5.3 50 103-162 79-129 (170)
97 COG3967 DltE Short-chain dehyd 44.5 29 0.00063 30.0 3.6 27 42-69 8-34 (245)
98 PRK06756 flavodoxin; Provision 44.4 37 0.00081 26.3 4.1 33 8-43 1-33 (148)
99 PF09152 DUF1937: Domain of un 44.4 23 0.0005 27.4 2.7 38 97-140 72-114 (116)
100 cd03801 GT1_YqgM_like This fam 44.1 66 0.0014 26.6 5.8 69 98-187 269-339 (374)
101 COG0716 FldA Flavodoxins [Ener 43.9 34 0.00073 26.8 3.8 34 8-44 1-34 (151)
102 TIGR02153 gatD_arch glutamyl-t 43.8 59 0.0013 30.4 5.8 49 105-155 140-193 (404)
103 PRK02645 ppnK inorganic polyph 43.7 1.2E+02 0.0026 27.0 7.6 29 40-70 59-87 (305)
104 PF13692 Glyco_trans_1_4: Glyc 43.4 81 0.0018 23.1 5.7 68 98-186 64-132 (135)
105 PF05159 Capsule_synth: Capsul 43.2 21 0.00044 30.7 2.6 37 100-148 195-231 (269)
106 TIGR03702 lip_kinase_YegS lipi 43.2 1.4E+02 0.003 26.0 7.9 31 108-140 55-86 (293)
107 PRK00208 thiG thiazole synthas 43.2 2.3E+02 0.005 24.9 11.8 102 9-127 94-196 (250)
108 COG3573 Predicted oxidoreducta 43.2 66 0.0014 30.1 5.9 83 41-131 141-244 (552)
109 PRK04539 ppnK inorganic polyph 43.1 1.4E+02 0.0031 26.5 8.0 32 7-41 4-35 (296)
110 PRK06703 flavodoxin; Provision 43.0 68 0.0015 24.9 5.4 14 56-69 105-118 (151)
111 PRK04183 glutamyl-tRNA(Gln) am 42.9 64 0.0014 30.3 5.9 48 105-155 153-205 (419)
112 PRK06029 3-octaprenyl-4-hydrox 42.9 46 0.001 27.6 4.5 81 104-185 78-168 (185)
113 PRK09461 ansA cytoplasmic aspa 42.7 64 0.0014 29.2 5.8 51 103-155 80-135 (335)
114 PF09314 DUF1972: Domain of un 42.7 42 0.0009 27.9 4.2 36 8-43 1-37 (185)
115 PRK06443 chorismate mutase; Va 42.6 43 0.00093 27.8 4.2 42 24-69 91-132 (177)
116 PF01320 Colicin_Pyocin: Colic 42.6 24 0.00052 25.8 2.4 53 140-196 27-84 (85)
117 TIGR00642 mmCoA_mut_beta methy 42.4 42 0.00092 33.1 4.9 44 8-55 546-589 (619)
118 PRK13057 putative lipid kinase 42.2 58 0.0013 28.3 5.3 32 104-141 50-81 (287)
119 PRK08887 nicotinic acid mononu 42.2 34 0.00074 27.8 3.6 24 8-31 1-24 (174)
120 PRK13337 putative lipid kinase 41.6 1.4E+02 0.0031 26.0 7.8 30 108-140 60-89 (304)
121 PRK00861 putative lipid kinase 41.4 58 0.0013 28.4 5.2 28 108-140 60-87 (300)
122 PRK14572 D-alanyl-alanine synt 41.4 52 0.0011 29.5 5.0 39 8-46 1-39 (347)
123 PF14359 DUF4406: Domain of un 41.2 85 0.0018 23.0 5.3 31 96-126 51-84 (92)
124 cd03818 GT1_ExpC_like This fam 41.0 1.2E+02 0.0026 27.0 7.4 70 98-188 294-365 (396)
125 TIGR02113 coaC_strep phosphopa 40.7 48 0.001 27.2 4.3 84 103-186 75-176 (177)
126 CHL00139 rpl18 ribosomal prote 40.5 66 0.0014 24.5 4.7 38 27-64 61-106 (109)
127 cd06353 PBP1_BmpA_Med_like Per 40.4 81 0.0018 27.0 5.9 54 10-71 154-207 (258)
128 cd04728 ThiG Thiazole synthase 40.4 2.6E+02 0.0055 24.6 11.2 102 9-127 94-196 (248)
129 cd03799 GT1_amsK_like This is 40.3 1.2E+02 0.0027 25.6 7.0 74 96-188 247-326 (355)
130 PRK03372 ppnK inorganic polyph 40.1 1.7E+02 0.0037 26.2 8.0 33 6-41 3-35 (306)
131 PLN02275 transferase, transfer 40.0 2.2E+02 0.0049 25.3 8.9 70 96-186 298-370 (371)
132 COG0794 GutQ Predicted sugar p 39.9 2.3E+02 0.0051 24.0 8.6 40 33-72 32-73 (202)
133 PRK13054 lipid kinase; Reviewe 39.8 1.6E+02 0.0035 25.6 7.8 34 105-140 57-90 (300)
134 TIGR03575 selen_PSTK_euk L-ser 39.7 1.1E+02 0.0024 27.9 6.8 49 134-185 125-174 (340)
135 PRK02649 ppnK inorganic polyph 39.1 64 0.0014 28.9 5.1 119 8-161 1-126 (305)
136 PF00106 adh_short: short chai 39.1 40 0.00086 25.8 3.5 29 42-71 3-31 (167)
137 COG2515 Acd 1-aminocyclopropan 39.1 96 0.0021 28.2 6.2 39 104-145 180-218 (323)
138 TIGR00147 lipid kinase, YegS/R 38.9 81 0.0018 27.2 5.7 31 42-73 60-91 (293)
139 cd03822 GT1_ecORF704_like This 38.9 1.5E+02 0.0033 25.0 7.3 70 96-188 259-333 (366)
140 COG0794 GutQ Predicted sugar p 38.9 2.4E+02 0.0053 23.9 9.6 38 101-141 83-120 (202)
141 cd07225 Pat_PNPLA6_PNPLA7 Pata 38.7 31 0.00068 30.8 3.1 31 30-62 5-35 (306)
142 PF00534 Glycos_transf_1: Glyc 38.7 1.8E+02 0.0038 22.2 7.5 74 95-187 83-156 (172)
143 PRK15484 lipopolysaccharide 1, 38.5 1.6E+02 0.0035 26.4 7.8 71 97-188 269-343 (380)
144 PRK01231 ppnK inorganic polyph 38.4 1.7E+02 0.0036 26.0 7.7 31 7-40 3-33 (295)
145 PRK13057 putative lipid kinase 38.4 66 0.0014 27.9 5.1 42 29-73 40-82 (287)
146 PRK07109 short chain dehydroge 38.1 1.7E+02 0.0037 25.8 7.8 56 7-70 7-62 (334)
147 PRK03378 ppnK inorganic polyph 38.0 1.9E+02 0.0042 25.6 8.0 60 7-70 4-93 (292)
148 PRK02649 ppnK inorganic polyph 38.0 1.7E+02 0.0037 26.2 7.7 30 39-70 69-98 (305)
149 PF01256 Carb_kinase: Carbohyd 37.9 2.2E+02 0.0047 24.5 8.1 126 43-186 2-134 (242)
150 PRK09922 UDP-D-galactose:(gluc 37.8 1.9E+02 0.0042 25.4 8.1 72 98-190 251-325 (359)
151 cd07227 Pat_Fungal_NTE1 Fungal 37.7 25 0.00054 30.9 2.2 29 32-62 2-30 (269)
152 TIGR03088 stp2 sugar transfera 37.7 1.1E+02 0.0025 26.7 6.5 68 100-188 268-337 (374)
153 PRK06703 flavodoxin; Provision 37.6 44 0.00095 25.9 3.5 33 8-43 1-33 (151)
154 COG0252 AnsB L-asparaginase/ar 37.4 57 0.0012 29.9 4.6 34 106-142 102-135 (351)
155 PRK08862 short chain dehydroge 37.4 1.6E+02 0.0036 24.3 7.2 54 9-70 6-59 (227)
156 cd03814 GT1_like_2 This family 37.4 98 0.0021 26.1 5.9 69 99-188 261-331 (364)
157 PRK05333 NAD-dependent deacety 37.2 56 0.0012 28.7 4.4 73 95-189 205-279 (285)
158 PRK12359 flavodoxin FldB; Prov 37.1 91 0.002 25.5 5.4 20 25-44 97-116 (172)
159 cd00587 HCP_like The HCP famil 37.0 51 0.0011 29.0 4.0 41 6-48 92-132 (258)
160 COG2085 Predicted dinucleotide 36.7 80 0.0017 27.0 5.1 52 8-70 1-52 (211)
161 cd04180 UGPase_euk_like Eukary 36.5 1E+02 0.0023 26.8 6.0 69 107-187 2-76 (266)
162 PRK09355 hydroxyethylthiazole 36.2 1.8E+02 0.0039 25.0 7.4 41 101-145 51-94 (263)
163 TIGR01182 eda Entner-Doudoroff 36.2 2E+02 0.0043 24.3 7.4 107 8-126 8-119 (204)
164 PRK03708 ppnK inorganic polyph 36.1 1.8E+02 0.0039 25.5 7.5 26 43-70 61-86 (277)
165 PRK14077 pnk inorganic polypho 35.9 85 0.0018 27.8 5.4 107 7-161 9-122 (287)
166 PTZ00032 60S ribosomal protein 35.7 71 0.0015 27.2 4.5 38 27-64 163-208 (211)
167 PF13380 CoA_binding_2: CoA bi 35.3 78 0.0017 23.8 4.4 31 9-44 1-31 (116)
168 cd05844 GT1_like_7 Glycosyltra 35.3 1.5E+02 0.0032 25.5 6.8 68 99-188 259-335 (367)
169 COG0159 TrpA Tryptophan syntha 35.2 1.6E+02 0.0034 26.1 6.8 63 117-185 77-141 (265)
170 smart00046 DAGKc Diacylglycero 35.1 82 0.0018 23.8 4.6 31 42-73 52-86 (124)
171 PRK06973 nicotinic acid mononu 35.0 64 0.0014 27.9 4.3 32 7-38 20-51 (243)
172 PRK01966 ddl D-alanyl-alanine 34.6 68 0.0015 28.5 4.6 36 9-44 4-39 (333)
173 PF03358 FMN_red: NADPH-depend 34.6 83 0.0018 24.1 4.6 34 9-43 1-34 (152)
174 PRK14571 D-alanyl-alanine synt 34.6 80 0.0017 27.4 5.0 35 10-44 2-36 (299)
175 TIGR03449 mycothiol_MshA UDP-N 34.5 1.7E+02 0.0037 26.0 7.2 72 96-188 294-367 (405)
176 PRK04885 ppnK inorganic polyph 34.5 2.3E+02 0.005 24.8 7.8 56 9-70 1-67 (265)
177 COG1063 Tdh Threonine dehydrog 34.4 1E+02 0.0022 27.7 5.8 29 40-70 170-199 (350)
178 cd04949 GT1_gtfA_like This fam 34.2 1.4E+02 0.0031 26.0 6.6 69 101-189 275-345 (372)
179 PRK14568 vanB D-alanine--D-lac 34.2 68 0.0015 28.7 4.6 36 9-44 4-39 (343)
180 KOG1718 Dual specificity phosp 33.9 42 0.00091 28.1 2.8 24 133-157 133-156 (198)
181 cd03819 GT1_WavL_like This fam 33.9 1.1E+02 0.0023 26.1 5.7 69 98-187 257-328 (355)
182 PRK14046 malate--CoA ligase su 33.8 3.9E+02 0.0084 24.7 14.4 120 40-186 257-384 (392)
183 PLN02945 nicotinamide-nucleoti 33.6 1.1E+02 0.0025 26.0 5.7 42 3-44 16-57 (236)
184 PF09587 PGA_cap: Bacterial ca 33.5 53 0.0012 27.9 3.6 20 30-49 206-225 (250)
185 cd03807 GT1_WbnK_like This fam 33.4 1.4E+02 0.003 24.9 6.1 67 100-188 264-331 (365)
186 PF13614 AAA_31: AAA domain; P 33.3 94 0.002 23.6 4.7 32 9-43 1-32 (157)
187 COG0300 DltE Short-chain dehyd 33.1 1.8E+02 0.0039 25.6 6.9 60 8-75 6-65 (265)
188 COG0703 AroK Shikimate kinase 33.1 1.5E+02 0.0033 24.4 6.0 81 33-115 66-155 (172)
189 KOG1201 Hydroxysteroid 17-beta 33.0 53 0.0011 29.6 3.5 28 39-67 38-65 (300)
190 KOG4175 Tryptophan synthase al 32.9 89 0.0019 26.9 4.7 63 117-182 78-140 (268)
191 cd00432 Ribosomal_L18_L5e Ribo 32.7 94 0.002 22.9 4.4 38 27-64 57-102 (103)
192 COG0163 UbiX 3-polyprenyl-4-hy 32.5 93 0.002 26.2 4.7 80 105-185 81-170 (191)
193 cd02201 FtsZ_type1 FtsZ is a G 32.5 3.1E+02 0.0066 24.2 8.4 73 32-112 78-154 (304)
194 COG1582 FlgEa Uncharacterized 32.0 40 0.00086 23.5 2.0 24 167-190 35-58 (67)
195 TIGR02690 resist_ArsH arsenica 31.8 1E+02 0.0022 26.3 5.0 38 5-43 23-60 (219)
196 PRK09536 btuD corrinoid ABC tr 31.8 1E+02 0.0023 28.6 5.5 73 51-123 277-357 (402)
197 PRK03708 ppnK inorganic polyph 31.7 94 0.002 27.3 4.9 35 9-46 1-35 (277)
198 PRK08185 hypothetical protein; 31.6 3.7E+02 0.008 23.8 11.7 103 16-125 98-217 (283)
199 cd03800 GT1_Sucrose_synthase T 31.3 1.2E+02 0.0026 26.3 5.6 69 99-188 297-367 (398)
200 PF03492 Methyltransf_7: SAM d 31.3 52 0.0011 29.7 3.3 42 144-185 198-242 (334)
201 COG3199 Predicted inorganic po 31.2 4.3E+02 0.0093 24.4 9.7 79 41-140 51-129 (355)
202 PRK13937 phosphoheptose isomer 31.1 1.4E+02 0.003 24.4 5.6 31 22-52 21-51 (188)
203 PRK13059 putative lipid kinase 31.1 99 0.0022 27.0 5.0 38 35-73 51-90 (295)
204 PF14947 HTH_45: Winged helix- 31.0 60 0.0013 22.6 3.0 41 145-186 32-72 (77)
205 PRK14077 pnk inorganic polypho 30.7 2.1E+02 0.0045 25.4 7.0 31 39-71 65-95 (287)
206 COG2081 Predicted flavoprotein 30.6 48 0.001 31.1 3.0 27 42-70 6-32 (408)
207 KOG4321 Predicted phosphate ac 30.5 57 0.0012 27.3 3.1 30 95-124 68-97 (279)
208 cd03812 GT1_CapH_like This fam 30.5 1.9E+02 0.0041 24.6 6.6 72 98-189 260-331 (358)
209 cd02072 Glm_B12_BD B12 binding 30.3 2.7E+02 0.0058 21.8 10.6 40 30-70 17-56 (128)
210 CHL00200 trpA tryptophan synth 30.2 2.6E+02 0.0057 24.4 7.4 40 117-160 75-119 (263)
211 PRK09880 L-idonate 5-dehydroge 30.1 2.7E+02 0.0059 24.3 7.7 30 40-71 171-201 (343)
212 PRK09271 flavodoxin; Provision 30.1 96 0.0021 24.5 4.4 32 9-43 1-32 (160)
213 PRK14076 pnk inorganic polypho 30.0 2.6E+02 0.0057 27.1 8.1 34 5-41 287-320 (569)
214 PF04007 DUF354: Protein of un 29.9 2.5E+02 0.0055 25.4 7.5 63 101-186 245-307 (335)
215 PRK10494 hypothetical protein; 29.9 1.9E+02 0.0042 25.0 6.6 12 170-181 181-192 (259)
216 PRK08227 autoinducer 2 aldolas 29.8 1.5E+02 0.0034 26.0 5.9 55 133-187 191-246 (264)
217 PLN02565 cysteine synthase 29.8 4E+02 0.0087 23.7 10.8 48 25-73 158-208 (322)
218 PRK07998 gatY putative fructos 29.8 4E+02 0.0087 23.7 10.7 31 95-125 188-218 (283)
219 PF13604 AAA_30: AAA domain; P 29.7 1.8E+02 0.0039 23.8 6.1 35 40-74 19-56 (196)
220 PF10727 Rossmann-like: Rossma 29.6 77 0.0017 24.6 3.6 31 5-44 7-37 (127)
221 PF00710 Asparaginase: Asparag 29.3 1.4E+02 0.0031 26.5 5.8 37 103-141 71-107 (313)
222 COG2242 CobL Precorrin-6B meth 29.3 2E+02 0.0043 24.1 6.2 123 29-161 24-153 (187)
223 PRK07454 short chain dehydroge 29.1 1.2E+02 0.0025 24.8 4.9 34 6-47 4-37 (241)
224 PRK14138 NAD-dependent deacety 29.0 1.7E+02 0.0036 25.2 5.9 70 95-186 169-240 (244)
225 cd01408 SIRT1 SIRT1: Eukaryoti 28.9 1.6E+02 0.0036 25.0 5.9 70 95-183 166-235 (235)
226 TIGR01205 D_ala_D_alaTIGR D-al 28.9 74 0.0016 27.6 3.8 38 10-47 1-38 (315)
227 PF04016 DUF364: Domain of unk 28.8 79 0.0017 25.0 3.6 74 96-185 54-130 (147)
228 PRK05568 flavodoxin; Provision 28.8 1E+02 0.0022 23.4 4.2 30 10-42 3-32 (142)
229 PRK00071 nadD nicotinic acid m 28.7 89 0.0019 25.7 4.1 26 8-33 3-28 (203)
230 PRK15427 colanic acid biosynth 28.6 2.6E+02 0.0055 25.5 7.5 71 99-188 293-369 (406)
231 cd03798 GT1_wlbH_like This fam 28.5 2.4E+02 0.0053 23.3 6.9 71 98-189 272-344 (377)
232 cd03823 GT1_ExpE7_like This fa 28.5 2.9E+02 0.0064 22.9 7.4 72 96-188 254-328 (359)
233 PLN02871 UDP-sulfoquinovose:DA 28.3 2.2E+02 0.0047 26.3 7.0 75 96-188 323-399 (465)
234 TIGR01753 flav_short flavodoxi 28.3 1.4E+02 0.0031 22.2 4.9 9 61-69 107-115 (140)
235 PRK14075 pnk inorganic polypho 28.1 2.2E+02 0.0047 24.6 6.6 53 9-71 1-69 (256)
236 cd03821 GT1_Bme6_like This fam 27.9 2.4E+02 0.0053 23.5 6.8 68 98-188 275-344 (375)
237 PRK08264 short chain dehydroge 27.9 3.1E+02 0.0067 22.2 7.3 29 41-70 8-37 (238)
238 PF11834 DUF3354: Domain of un 27.8 1.3E+02 0.0029 20.9 4.2 33 106-144 19-51 (69)
239 PRK05866 short chain dehydroge 27.8 3.2E+02 0.007 23.4 7.7 32 9-48 41-72 (293)
240 smart00854 PGA_cap Bacterial c 27.7 79 0.0017 26.7 3.7 20 30-49 195-214 (239)
241 TIGR01752 flav_long flavodoxin 27.5 1.7E+02 0.0037 23.2 5.5 20 53-72 100-119 (167)
242 PRK11840 bifunctional sulfur c 27.4 4.8E+02 0.01 23.8 10.1 102 9-128 168-271 (326)
243 PRK06756 flavodoxin; Provision 27.3 1.6E+02 0.0035 22.6 5.2 17 53-69 103-119 (148)
244 PRK06924 short chain dehydroge 27.3 1.1E+02 0.0023 25.2 4.4 29 8-44 1-29 (251)
245 TIGR00253 RNA_bind_YhbY putati 27.3 1.9E+02 0.0041 21.4 5.2 52 133-186 15-67 (95)
246 PRK01231 ppnK inorganic polyph 27.1 1.2E+02 0.0026 26.9 4.9 52 104-161 62-120 (295)
247 TIGR00167 cbbA ketose-bisphosp 26.9 58 0.0013 29.0 2.8 31 95-125 195-225 (288)
248 TIGR00147 lipid kinase, YegS/R 26.8 1.8E+02 0.0039 25.1 5.8 32 105-141 58-90 (293)
249 PF01985 CRS1_YhbY: CRS1 / Yhb 26.8 61 0.0013 23.1 2.4 56 129-186 11-67 (84)
250 TIGR01016 sucCoAbeta succinyl- 26.7 4.9E+02 0.011 23.6 13.1 70 105-185 311-383 (386)
251 TIGR01007 eps_fam capsular exo 26.7 1.8E+02 0.0038 23.6 5.5 35 7-44 16-50 (204)
252 cd03816 GT1_ALG1_like This fam 26.6 2.5E+02 0.0055 25.5 7.1 72 96-188 306-380 (415)
253 KOG2683 Sirtuin 4 and related 26.5 77 0.0017 27.9 3.3 40 101-143 243-282 (305)
254 PRK08105 flavodoxin; Provision 26.2 1.4E+02 0.0031 23.4 4.7 26 44-69 89-120 (149)
255 PF05690 ThiG: Thiazole biosyn 26.2 50 0.0011 28.8 2.2 93 30-142 113-205 (247)
256 PF04230 PS_pyruv_trans: Polys 26.1 97 0.0021 25.1 3.9 88 103-199 62-159 (286)
257 TIGR00236 wecB UDP-N-acetylglu 26.1 3.4E+02 0.0074 23.8 7.7 67 97-188 267-333 (365)
258 PLN02591 tryptophan synthase 26.1 2.8E+02 0.0061 24.1 6.9 41 117-161 62-107 (250)
259 PRK04155 chaperone protein Hch 26.0 69 0.0015 28.4 3.1 34 107-140 149-186 (287)
260 TIGR00936 ahcY adenosylhomocys 25.8 1.8E+02 0.0038 27.3 5.9 69 42-120 198-266 (406)
261 COG0061 nadF NAD kinase [Coenz 25.8 92 0.002 27.3 3.8 47 108-159 58-107 (281)
262 PRK09267 flavodoxin FldA; Vali 25.6 75 0.0016 25.1 3.0 34 8-44 1-34 (169)
263 TIGR00436 era GTP-binding prot 25.5 4.2E+02 0.0092 22.6 8.0 83 102-191 77-167 (270)
264 PF12831 FAD_oxidored: FAD dep 25.5 67 0.0014 29.7 3.0 27 42-70 2-28 (428)
265 PRK03372 ppnK inorganic polyph 25.4 1.5E+02 0.0032 26.6 5.1 53 103-161 71-130 (306)
266 PRK07775 short chain dehydroge 25.3 4.1E+02 0.0089 22.3 7.8 34 6-47 8-41 (274)
267 PLN02522 ATP citrate (pro-S)-l 25.3 6.8E+02 0.015 24.8 13.0 108 92-206 208-347 (608)
268 PF13407 Peripla_BP_4: Peripla 25.2 1.7E+02 0.0038 23.9 5.3 38 101-143 52-89 (257)
269 TIGR02919 accessory Sec system 25.0 1.7E+02 0.0037 27.5 5.7 81 88-189 330-411 (438)
270 PRK07677 short chain dehydroge 24.8 1.2E+02 0.0027 25.0 4.3 29 10-46 3-31 (252)
271 PRK15494 era GTPase Era; Provi 24.8 4.1E+02 0.0088 23.8 7.9 86 102-191 129-219 (339)
272 COG0150 PurM Phosphoribosylami 24.7 4.7E+02 0.01 24.1 8.1 92 28-123 115-222 (345)
273 TIGR01915 npdG NADPH-dependent 24.6 1.4E+02 0.0031 24.7 4.7 31 9-47 1-31 (219)
274 cd03132 GATase1_catalase Type 24.5 2.5E+02 0.0053 21.2 5.7 36 106-142 64-103 (142)
275 PRK07023 short chain dehydroge 24.4 1.4E+02 0.003 24.5 4.5 30 8-45 1-30 (243)
276 PRK12827 short chain dehydroge 24.4 1.6E+02 0.0034 23.9 4.8 30 8-45 6-35 (249)
277 PRK10343 RNA-binding protein Y 24.3 2.3E+02 0.0049 21.2 5.1 51 133-185 17-68 (97)
278 PRK13146 hisH imidazole glycer 24.1 2E+02 0.0043 23.9 5.4 18 53-70 66-83 (209)
279 cd07381 MPP_CapA CapA and rela 24.0 82 0.0018 26.4 3.1 20 30-49 197-216 (239)
280 PRK12481 2-deoxy-D-gluconate 3 24.0 1.7E+02 0.0037 24.3 5.0 36 1-44 1-36 (251)
281 cd04261 AAK_AKii-LysC-BS AAK_A 24.0 2.1E+02 0.0045 24.1 5.6 34 14-48 6-41 (239)
282 cd03805 GT1_ALG2_like This fam 23.9 4.1E+02 0.0089 23.1 7.7 68 99-188 294-363 (392)
283 COG1597 LCB5 Sphingosine kinas 23.8 1E+02 0.0022 27.4 3.7 31 105-140 58-89 (301)
284 PRK07102 short chain dehydroge 23.6 1.4E+02 0.0031 24.4 4.5 30 8-45 1-30 (243)
285 cd06059 Tubulin The tubulin su 23.6 4.9E+02 0.011 23.7 8.3 53 23-75 69-133 (382)
286 PF03721 UDPG_MGDP_dh_N: UDP-g 23.6 98 0.0021 25.3 3.4 71 102-180 74-155 (185)
287 PF01182 Glucosamine_iso: Gluc 23.5 3E+02 0.0065 22.6 6.4 85 101-186 17-110 (199)
288 TIGR01501 MthylAspMutase methy 23.5 3.7E+02 0.0079 21.1 13.3 40 30-70 19-58 (134)
289 COG0112 GlyA Glycine/serine hy 23.5 76 0.0016 29.8 2.9 40 28-67 292-341 (413)
290 PRK08159 enoyl-(acyl carrier p 23.4 1.6E+02 0.0034 25.1 4.8 38 1-44 1-40 (272)
291 PRK05583 ribosomal protein L7A 23.4 2E+02 0.0043 21.5 4.8 44 103-154 56-99 (104)
292 PLN00141 Tic62-NAD(P)-related 23.4 1.5E+02 0.0032 24.7 4.6 31 7-45 16-46 (251)
293 PRK07308 flavodoxin; Validated 23.3 1.8E+02 0.004 22.3 4.8 18 52-69 101-118 (146)
294 PLN02586 probable cinnamyl alc 23.3 2.3E+02 0.0049 25.3 6.0 31 40-72 185-215 (360)
295 PRK07523 gluconate 5-dehydroge 23.3 4.2E+02 0.0091 21.7 8.1 65 1-73 3-67 (255)
296 PRK05854 short chain dehydroge 23.3 1.3E+02 0.0027 26.3 4.3 19 29-47 27-45 (313)
297 cd06320 PBP1_allose_binding Pe 23.3 1.3E+02 0.0028 24.9 4.2 33 11-45 2-34 (275)
298 PF01116 F_bP_aldolase: Fructo 23.3 1.1E+02 0.0023 27.3 3.7 97 22-125 109-224 (287)
299 PRK11780 isoprenoid biosynthes 23.2 87 0.0019 26.5 3.1 37 9-46 2-39 (217)
300 PRK07152 nadD putative nicotin 23.2 1.1E+02 0.0024 27.5 3.9 29 9-37 1-29 (342)
301 PF12146 Hydrolase_4: Putative 23.2 1.5E+02 0.0032 20.7 3.9 33 9-45 16-48 (79)
302 PRK05476 S-adenosyl-L-homocyst 23.2 2.1E+02 0.0045 27.0 5.8 68 42-119 215-282 (425)
303 PRK07308 flavodoxin; Validated 23.2 1.1E+02 0.0024 23.5 3.5 40 103-142 47-90 (146)
304 PRK05867 short chain dehydroge 23.1 4.2E+02 0.0092 21.7 8.1 62 1-70 2-63 (253)
305 PRK09004 FMN-binding protein M 23.1 1.9E+02 0.0041 22.6 4.8 9 61-69 110-118 (146)
306 PLN02271 serine hydroxymethylt 23.0 82 0.0018 31.0 3.2 39 29-67 444-492 (586)
307 cd04193 UDPGlcNAc_PPase UDPGlc 23.0 3.1E+02 0.0067 24.6 6.8 74 101-185 10-93 (323)
308 CHL00162 thiG thiamin biosynth 23.0 91 0.002 27.6 3.2 30 98-127 181-210 (267)
309 TIGR01198 pgl 6-phosphoglucono 23.0 4.6E+02 0.01 22.1 7.6 42 102-146 25-66 (233)
310 COG0703 AroK Shikimate kinase 23.0 3.8E+02 0.0082 22.1 6.7 64 105-185 72-136 (172)
311 cd04962 GT1_like_5 This family 22.9 3.4E+02 0.0073 23.3 6.9 68 99-187 265-334 (371)
312 cd04260 AAK_AKi-DapG-BS AAK_AK 22.9 1.1E+02 0.0023 26.1 3.6 26 13-38 5-30 (244)
313 PRK06180 short chain dehydroge 22.9 1.3E+02 0.0028 25.4 4.1 32 8-47 4-35 (277)
314 KOG0832 Mitochondrial/chloropl 22.8 2.5E+02 0.0054 24.6 5.7 46 22-68 90-136 (251)
315 cd01356 AcnX_swivel Putative A 22.8 1.6E+02 0.0034 23.0 4.2 36 104-139 42-77 (123)
316 PRK13889 conjugal transfer rel 22.8 1.9E+02 0.0041 30.3 5.9 40 35-74 358-400 (988)
317 KOG1098 Putative SAM-dependent 22.8 3.2E+02 0.007 27.5 7.1 50 20-70 10-75 (780)
318 PRK06398 aldose dehydrogenase; 22.7 2E+02 0.0042 24.0 5.2 35 1-45 1-35 (258)
319 PRK08569 rpl18p 50S ribosomal 22.6 2E+02 0.0042 24.3 5.0 39 27-65 80-128 (193)
320 PRK07890 short chain dehydroge 22.6 3.9E+02 0.0084 21.8 7.0 54 9-70 6-59 (258)
321 PRK07102 short chain dehydroge 22.6 1.3E+02 0.0028 24.7 4.0 30 41-71 3-32 (243)
322 cd01412 SIRT5_Af1_CobB SIRT5_A 22.6 3.6E+02 0.0078 22.4 6.8 66 97-183 157-223 (224)
323 PRK07035 short chain dehydroge 22.5 1.3E+02 0.0027 24.8 3.9 30 9-46 9-38 (252)
324 KOG2467 Glycine/serine hydroxy 22.5 83 0.0018 29.5 2.9 35 29-63 330-374 (477)
325 TIGR01832 kduD 2-deoxy-D-gluco 22.4 1.3E+02 0.0028 24.6 4.0 30 9-46 6-35 (248)
326 KOG1014 17 beta-hydroxysteroid 22.3 1.1E+02 0.0024 27.7 3.6 51 5-62 45-95 (312)
327 PF12965 DUF3854: Domain of un 22.2 3.2E+02 0.0069 21.2 5.9 49 9-58 69-124 (130)
328 PF01202 SKI: Shikimate kinase 22.2 1.5E+02 0.0031 23.2 4.0 37 32-70 55-91 (158)
329 PRK01185 ppnK inorganic polyph 22.2 1.8E+02 0.0039 25.6 4.9 34 9-46 1-34 (271)
330 TIGR01754 flav_RNR ribonucleot 22.2 1.5E+02 0.0033 22.6 4.1 41 104-146 50-94 (140)
331 cd03817 GT1_UGDG_like This fam 22.2 4.3E+02 0.0093 22.0 7.2 40 96-143 270-311 (374)
332 PF04722 Ssu72: Ssu72-like pro 22.1 1.9E+02 0.0042 24.4 4.9 33 9-48 2-35 (195)
333 PRK00625 shikimate kinase; Pro 22.1 3.6E+02 0.0077 21.8 6.4 76 33-110 67-148 (173)
334 PRK08177 short chain dehydroge 22.0 1.6E+02 0.0035 23.9 4.4 30 9-46 2-31 (225)
335 PF00290 Trp_syntA: Tryptophan 21.9 1.7E+02 0.0036 25.7 4.7 40 117-159 70-110 (259)
336 TIGR02768 TraA_Ti Ti-type conj 21.9 2.1E+02 0.0046 28.8 6.0 36 39-74 368-406 (744)
337 COG3980 spsG Spore coat polysa 21.9 1.5E+02 0.0034 26.7 4.4 41 9-49 1-41 (318)
338 PRK13826 Dtr system oriT relax 21.8 2.1E+02 0.0045 30.5 6.0 37 37-73 395-434 (1102)
339 PRK08085 gluconate 5-dehydroge 21.8 4.5E+02 0.0097 21.5 8.1 32 9-48 10-41 (254)
340 PTZ00286 6-phospho-1-fructokin 21.7 5.4E+02 0.012 24.5 8.3 33 39-71 88-126 (459)
341 PRK06300 enoyl-(acyl carrier p 21.6 1.3E+02 0.0028 26.5 4.0 18 29-46 23-40 (299)
342 KOG1207 Diacetyl reductase/L-x 21.6 1.2E+02 0.0026 25.7 3.5 30 41-71 9-38 (245)
343 COG1010 CobJ Precorrin-3B meth 21.6 5.6E+02 0.012 22.5 9.9 113 27-143 60-196 (249)
344 KOG0503 Asparaginase [Amino ac 21.6 1.4E+02 0.0031 27.5 4.2 36 104-142 121-156 (368)
345 cd03148 GATase1_EcHsp31_like T 21.5 74 0.0016 27.2 2.3 34 107-140 98-135 (232)
346 cd06313 PBP1_ABC_sugar_binding 21.5 1.4E+02 0.0031 24.9 4.1 38 100-142 51-88 (272)
347 PRK06194 hypothetical protein; 21.4 4.9E+02 0.011 21.7 7.9 31 9-47 7-37 (287)
348 cd02190 epsilon_tubulin The tu 21.2 3.6E+02 0.0077 24.8 6.9 53 22-74 78-142 (379)
349 PRK09330 cell division protein 21.2 5.1E+02 0.011 24.1 7.9 54 51-112 114-167 (384)
350 PRK05920 aromatic acid decarbo 21.2 1.8E+02 0.0038 24.6 4.5 81 104-185 93-183 (204)
351 PRK00207 sulfur transfer compl 21.0 2.3E+02 0.005 21.8 4.9 33 10-43 2-34 (128)
352 cd06300 PBP1_ABC_sugar_binding 21.0 1.7E+02 0.0036 24.2 4.4 27 11-39 2-28 (272)
353 PRK14106 murD UDP-N-acetylmura 20.9 2.8E+02 0.006 25.4 6.2 11 103-113 67-77 (450)
354 cd03147 GATase1_Ydr533c_like T 20.9 70 0.0015 27.3 2.1 34 107-140 96-133 (231)
355 PRK12367 short chain dehydroge 20.9 1.5E+02 0.0032 25.0 4.1 30 41-71 16-45 (245)
356 COG2921 Uncharacterized conser 20.8 81 0.0017 23.3 2.0 31 177-209 30-62 (90)
357 cd01411 SIR2H SIR2H: Uncharact 20.8 1.3E+02 0.0027 25.5 3.6 44 96-143 163-206 (225)
358 PLN03050 pyridoxine (pyridoxam 20.8 1.7E+02 0.0036 25.4 4.4 30 9-43 61-90 (246)
359 cd02191 FtsZ FtsZ is a GTPase 20.8 6E+02 0.013 22.5 9.1 59 46-112 95-154 (303)
360 TIGR00715 precor6x_red precorr 20.8 2.3E+02 0.005 24.6 5.3 17 171-187 239-255 (256)
361 PRK08339 short chain dehydroge 20.7 1.5E+02 0.0032 25.0 4.0 30 9-46 9-38 (263)
362 cd03811 GT1_WabH_like This fam 20.7 2.5E+02 0.0055 23.0 5.4 35 101-143 260-296 (353)
363 PRK09291 short chain dehydroge 20.6 1.6E+02 0.0034 24.2 4.2 31 9-47 3-33 (257)
364 PRK10834 vancomycin high tempe 20.6 3.4E+02 0.0074 23.5 6.2 9 108-116 84-92 (239)
365 PRK13111 trpA tryptophan synth 20.6 2.6E+02 0.0057 24.3 5.6 42 117-161 72-118 (258)
366 PRK08589 short chain dehydroge 20.4 1.5E+02 0.0032 25.0 4.0 53 9-70 7-59 (272)
367 cd00952 CHBPH_aldolase Trans-o 20.4 5.7E+02 0.012 22.6 7.8 66 9-75 44-114 (309)
368 PRK02155 ppnK NAD(+)/NADH kina 20.3 2.2E+02 0.0047 25.2 5.1 52 104-161 63-121 (291)
369 KOG3974 Predicted sugar kinase 20.3 6.4E+02 0.014 22.7 8.1 47 97-146 94-143 (306)
370 PRK00414 gmhA phosphoheptose i 20.1 3.9E+02 0.0085 21.8 6.4 28 23-50 28-55 (192)
371 COG0787 Alr Alanine racemase [ 20.1 3.6E+02 0.0078 24.8 6.6 64 104-187 54-117 (360)
372 PRK08217 fabG 3-ketoacyl-(acyl 20.0 1.6E+02 0.0034 24.0 4.0 28 10-45 7-34 (253)
373 COG4098 comFA Superfamily II D 20.0 7.4E+02 0.016 23.3 8.9 54 22-75 99-155 (441)
No 1
>TIGR00730 conserved hypothetical protein, DprA/Smf-related, family 2. This model represents one branch of a subfamily of proteins of unknown function. Both PSI-BLAST and weak hits by this model show a low level of similarity to and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting that the branches may have distinct functions.
Probab=100.00 E-value=1.1e-53 Score=352.71 Aligned_cols=178 Identities=47% Similarity=0.850 Sum_probs=168.9
Q ss_pred ceEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEcCCCcChhHHHHHHHHhcCCeEEEEeCCCCCCCCCCCCCCcee
Q 028138 9 KRICVFCGSSSGKKATYQEAAVELGKELVERKLDLVYGGGSVGLMGLVSQAVHDGGRHVLGVIPKTLTPREITGDPVGEV 88 (213)
Q Consensus 9 ~~I~V~ggs~~~~~~~~~~~A~~lG~~lA~~G~~lv~GGg~~GlM~a~~~ga~~~gG~viGv~P~~~~~~e~~~~~~~~~ 88 (213)
++|||||||+.+++|.|++.|++||++||++|+.||||||..|+|+++++||+++||.|+||+|..+..++.+++.++++
T Consensus 1 ~~i~V~~~s~~~~~~~~~~~A~~lG~~la~~g~~lV~GGg~~GlM~a~a~ga~~~gG~viGi~p~~l~~~~~~~~~~~~~ 80 (178)
T TIGR00730 1 KTVCVYCGSSPGGNAAYKELAAELGAYLAGQGWGLVYGGGRVGLMGAIADAAMENGGTAVGVNPSGLFSGEVVHQNLTEL 80 (178)
T ss_pred CEEEEECcCCCCCCcHHHHHHHHHHHHHHHCCCEEEECCChHhHHHHHHHHHHhcCCeEEEecchhhhhhhccCCCCCce
Confidence 47999999999999999999999999999999999999995599999999999999999999998876666667777888
Q ss_pred eecCCHHHHHHHHHHhcCeEEEecCCCCcHHHHHHHHHHHHhCCCCCceEEEecCccchHHHHHHHHHHHcCCCCccccC
Q 028138 89 KTVSDMHQRKAEMARQADAFIALPGGYGTLEELLEVITWAQLGIHRKPVGLLNVDGFYNSLLSFVDKAVDEGFISPTARR 168 (213)
Q Consensus 89 ~~~~~~~~R~~~l~~~sDa~IvlpGG~GTL~Ei~~~~~~~~lg~~~kPiill~~~g~~~~l~~~l~~~~~~g~i~~~~~~ 168 (213)
+++++|++||++|++.||+||+||||+|||+|++++|+|.|+|+|+|||+++|.+|||+++++|+++++++||++++..+
T Consensus 81 i~~~~~~~Rk~~m~~~sda~I~lPGG~GTL~El~e~~~~~qlg~~~kPiil~n~~g~~~~l~~~l~~~~~~gfi~~~~~~ 160 (178)
T TIGR00730 81 IEVNGMHERKAMMAELADAFIAMPGGFGTLEELFEVLTWAQLGIHQKPIILFNVNGHFDGLVEWLKYSIQEGFISESHLK 160 (178)
T ss_pred EEECCHHHHHHHHHHhCCEEEEcCCCcchHHHHHHHHHHHHcCCCCCCEEEECCcchHHHHHHHHHHHHHCCCCCHHHcC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEcCCHHHHHHHHHhh
Q 028138 169 IIISAPTAKKLVRQLEEY 186 (213)
Q Consensus 169 ~i~~~~~~ee~~~~l~~~ 186 (213)
.+.+++|++|++++|.++
T Consensus 161 ~~~~~d~~~e~~~~i~~~ 178 (178)
T TIGR00730 161 LIHVVSRPDELIEQVQNY 178 (178)
T ss_pred cEEEcCCHHHHHHHHHhC
Confidence 999999999999999763
No 2
>COG1611 Predicted Rossmann fold nucleotide-binding protein [General function prediction only]
Probab=100.00 E-value=1.2e-44 Score=304.80 Aligned_cols=184 Identities=40% Similarity=0.682 Sum_probs=167.7
Q ss_pred ccCCceEEEEcCCCCCCCHH-HHHHHHHHHHHHHHCCCeEEEcCCCcChhHHHHHHHHhcCCeEEEEeCCCCCCCCCCCC
Q 028138 5 KSRFKRICVFCGSSSGKKAT-YQEAAVELGKELVERKLDLVYGGGSVGLMGLVSQAVHDGGRHVLGVIPKTLTPREITGD 83 (213)
Q Consensus 5 ~~~~~~I~V~ggs~~~~~~~-~~~~A~~lG~~lA~~G~~lv~GGg~~GlM~a~~~ga~~~gG~viGv~P~~~~~~e~~~~ 83 (213)
...+++|||||||+...++. |++.|++||+.||++|+.|+|||++ |+|+|+++||.++||.||||+|......+.++.
T Consensus 11 ~~~~~~i~V~~gs~~~~~~~~~~~~a~~lg~~la~~g~~V~tGG~~-GiMea~~~gA~~~gg~~vGi~p~~~~~~e~~~~ 89 (205)
T COG1611 11 FIGIRQIVVICGSARGIEPEEYYELARELGRELAKRGLLVITGGGP-GVMEAVARGALEAGGLVVGILPGLLHEQEPPNY 89 (205)
T ss_pred ccCcceEEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEeCCch-hhhhHHHHHHHHcCCeEEEecCCCchhhccCcc
Confidence 34588999999999866666 9999999999999999998888887 999999999999999999999987655553333
Q ss_pred CCceeeecCCHHHHHHHHHHhcCeEEEecCCCCcHHHHHHHHHHHHhCCC--CCceEEEecCccchHHHHHHH-HHHHcC
Q 028138 84 PVGEVKTVSDMHQRKAEMARQADAFIALPGGYGTLEELLEVITWAQLGIH--RKPVGLLNVDGFYNSLLSFVD-KAVDEG 160 (213)
Q Consensus 84 ~~~~~~~~~~~~~R~~~l~~~sDa~IvlpGG~GTL~Ei~~~~~~~~lg~~--~kPiill~~~g~~~~l~~~l~-~~~~~g 160 (213)
..++++++.+|++||..|+++|||||++|||+||++|++++|+|.|++.+ .+|+++++.++||+++.++++ +++.++
T Consensus 90 ~~~~l~~~~~~~~Rk~~~~~~ada~V~~pGG~GTleEl~e~lt~~q~g~~~l~~~~~i~~~~~~~~~~~~~~d~~~i~~~ 169 (205)
T COG1611 90 EVIELITGMDFAERKRAMVRSADAFIVLPGGFGTLEELFEALTLGQTGVHALTPPPLILNGNGFWEPLLEFLDPHLIVEG 169 (205)
T ss_pred ccceeeecCCHHHHHHHHHHhCCEEEEeCCCcchHHHHHHHHHHhhCCcccCCCCcEEecchHHHHHHHHHhCHHHHHhh
Confidence 45678899999999999999999999999999999999999999999988 788888999999999999998 899999
Q ss_pred CCCccccCcEEEcCCHHHHHHHHHhhcCC
Q 028138 161 FISPTARRIIISAPTAKKLVRQLEEYVPE 189 (213)
Q Consensus 161 ~i~~~~~~~i~~~~~~ee~~~~l~~~~~~ 189 (213)
++++...+++.+++|++++++.+.++.++
T Consensus 170 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (205)
T COG1611 170 LISEADRELLIVVDDAEEAIDAILKYLPP 198 (205)
T ss_pred cCChhhhhheeeecCHHHHHHHHHHhccc
Confidence 99999999999999999999999998766
No 3
>TIGR00725 conserved hypothetical protein, DprA/Smf-related, family 1. This model represents one branch of a subfamily of uncharacterized proteins. Both PSI-BLAST and weak hits by this model show a low level of similarity and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting the branches may have distinct functions. This family is one of several families within the scope of PFAM model pfam03641, several members of which are annotated as lysine decarboxylases. That larger family, and the branch described by this model, have a well-conserved motif PGGXGTXXE.
Probab=100.00 E-value=1.8e-41 Score=275.43 Aligned_cols=157 Identities=31% Similarity=0.437 Sum_probs=134.9
Q ss_pred CceEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEcCCCcChhHHHHHHHHhcCCeEEEEeCCCCCCCCCCCCCCce
Q 028138 8 FKRICVFCGSSSGKKATYQEAAVELGKELVERKLDLVYGGGSVGLMGLVSQAVHDGGRHVLGVIPKTLTPREITGDPVGE 87 (213)
Q Consensus 8 ~~~I~V~ggs~~~~~~~~~~~A~~lG~~lA~~G~~lv~GGg~~GlM~a~~~ga~~~gG~viGv~P~~~~~~e~~~~~~~~ 87 (213)
|++|||||||+ .+|.|++.|++||++||++|+.|||||+. |+|++++++|+++||+||||+|.... ..+++.+
T Consensus 1 ~~~I~V~gss~--~~~~~~~~A~~lg~~La~~g~~lv~Gg~~-GlM~a~a~ga~~~gg~viGVlp~~l~----~~~~~~~ 73 (159)
T TIGR00725 1 MVQIGVIGSSN--KSEELYEIAYRLGKELAKKGHILINGGRT-GVMEAVSKGAREAGGLVVGILPDEDF----AGNPYLT 73 (159)
T ss_pred CeEEEEEeCCC--CChHHHHHHHHHHHHHHHCCCEEEcCCch-hHHHHHHHHHHHCCCeEEEECChhhc----cCCCCce
Confidence 57899999887 48899999999999999999999999887 99999999999999999999998653 2345555
Q ss_pred eeecCCH-HHHHHHHHHhcCeEEEecCCCCcHHHHHHHHHHHHhCCCCCceEEEecCccchHHHHHHHHHHHcCCCCccc
Q 028138 88 VKTVSDM-HQRKAEMARQADAFIALPGGYGTLEELLEVITWAQLGIHRKPVGLLNVDGFYNSLLSFVDKAVDEGFISPTA 166 (213)
Q Consensus 88 ~~~~~~~-~~R~~~l~~~sDa~IvlpGG~GTL~Ei~~~~~~~~lg~~~kPiill~~~g~~~~l~~~l~~~~~~g~i~~~~ 166 (213)
..+.++| +.||++|++.||+||++|||+|||+|++++|+ ++|||+++|.+|||+++++++ ..++++.++
T Consensus 74 ~~i~~~~~~~Rk~~m~~~sda~IvlpGG~GTL~E~~~a~~------~~kpv~~l~~~g~~~~~l~~~---~~~~~~~~~- 143 (159)
T TIGR00725 74 IKVKTGMNFARNFILVRSADVVVSVGGGYGTAIEILGAYA------LGGPVVVLRGTGGWTDRLSQV---LIEGVYLDE- 143 (159)
T ss_pred EEEECCCcchHHHHHHHHCCEEEEcCCchhHHHHHHHHHH------cCCCEEEEECCCcchHHHHHH---Hhccccccc-
Confidence 5444444 88999999999999999999999999999997 589999999999999988864 344444432
Q ss_pred cCcEEEcCCHHHHHHHH
Q 028138 167 RRIIISAPTAKKLVRQL 183 (213)
Q Consensus 167 ~~~i~~~~~~ee~~~~l 183 (213)
.+.+++|++|+++++
T Consensus 144 --~~~~~~~~~e~~~~~ 158 (159)
T TIGR00725 144 --RVIVEITPAEAVKLA 158 (159)
T ss_pred --eeEecCCHHHHHHhh
Confidence 699999999999865
No 4
>PF03641 Lysine_decarbox: Possible lysine decarboxylase; InterPro: IPR005269 This entry represents a cytokinin-activating enzyme working in the direct activation pathway. It is a phosphoribohydrolase that converts inactive cytokinin nucleotides to the biologically active free-base forms [, ]. The proteins in this entry belong to the LOG family of proteins.; PDB: 1YDH_B 2Q4D_A 1RCU_C 1WEH_B 3SBX_F 3BQ9_B 2PMB_D 3GH1_D 1WEK_C 3QUA_A ....
Probab=100.00 E-value=2.4e-38 Score=249.85 Aligned_cols=131 Identities=44% Similarity=0.755 Sum_probs=123.6
Q ss_pred hHHHHHHHHhcCCeEEEEeCCCCCC-CCCCCCCCceeeecCCHHHHHHHHHHhcCeEEEecCCCCcHHHHHHHHHHHHhC
Q 028138 53 MGLVSQAVHDGGRHVLGVIPKTLTP-REITGDPVGEVKTVSDMHQRKAEMARQADAFIALPGGYGTLEELLEVITWAQLG 131 (213)
Q Consensus 53 M~a~~~ga~~~gG~viGv~P~~~~~-~e~~~~~~~~~~~~~~~~~R~~~l~~~sDa~IvlpGG~GTL~Ei~~~~~~~~lg 131 (213)
|+|+++||+++||+|+||+|+...+ ++.+++.+++++++++|++||++|+++||+||++|||+|||+|++++|+|.|++
T Consensus 1 M~a~~~ga~~~gG~viGi~p~~~~~~~~~~~~~~~~~~~~~~~~~Rk~~m~~~sda~I~lPGG~GTl~El~~~~~~~~l~ 80 (133)
T PF03641_consen 1 MGAVAKGAKEAGGRVIGIIPEFLFPFEEPPNPYVTELIIVDDMFERKEIMIESSDAFIALPGGIGTLDELFEALTLMQLG 80 (133)
T ss_dssp HHHHHHHHHHTTTTEEEEEETTGTTTTTTCCTTSSEEEEESSHHHHHHHHHHHESEEEEES-SHHHHHHHHHHHHHHHTT
T ss_pred CcHHHHHHHHcCCeEEEEecCccccccccCCcccCceeEeCChHHHHHHHHHhCCEEEEEecCCchHHHHHHHHHHHhhc
Confidence 9999999999999999999998888 666666678889999999999999999999999999999999999999999999
Q ss_pred CCCC-ceEEEecCccchHHHHHHHHHHHcCCCCccccCcEEEcCCHHHHHHHH
Q 028138 132 IHRK-PVGLLNVDGFYNSLLSFVDKAVDEGFISPTARRIIISAPTAKKLVRQL 183 (213)
Q Consensus 132 ~~~k-Piill~~~g~~~~l~~~l~~~~~~g~i~~~~~~~i~~~~~~ee~~~~l 183 (213)
.++| ||+|+|.+|||+++++|+++++++||++++..+.+.+++|++|++++|
T Consensus 81 ~~~~~Piil~~~~g~w~~l~~~l~~~~~~g~i~~~~~~~~~~~d~~~e~~~~i 133 (133)
T PF03641_consen 81 RHNKVPIILLNIDGFWDPLLEFLDRMIEEGFISPDDLDLLHFVDDPEEALEYI 133 (133)
T ss_dssp SSTS-EEEEEECGGCCHHHHHHHHHHHHTTSSSHHHHCCEEEESSHHHHHHHH
T ss_pred cccCCCEEEeCCcchHHHHHHHHHHHHHCCCCCHHHCCeEEEeCCHHHHHhhC
Confidence 8777 999999999999999999999999999999999999999999999876
No 5
>TIGR00732 dprA DNA protecting protein DprA. Disruption of this gene in both Haemophilus influenzae and Helicobacter pylori drastically reduces the efficiency of transformation with exogenous DNA, but with different levels of effect on chromosomal (linear) and plasmid (circular) DNA. This difference suggests the DprA is not active in recombination, and it has been shown not to affect DNA binding, leaving the intermediate step in natural transformation, DNA processing. In Strep. pneumoniae, inactivation of dprA had no effect on the uptake of DNA. All of these data indicated that DprA is required at a later stage in transformation. Subsequently DprA and RecA were both shown in S. pneumoniae to be required to protect incoming ssDNA from immediate degradation. Role of DprA in non-transformable species is not known. The gene symbol smf was assigned in E. coli, but without assignment of function.
Probab=99.66 E-value=5.1e-15 Score=126.13 Aligned_cols=155 Identities=15% Similarity=0.207 Sum_probs=117.5
Q ss_pred ceEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEcCCCcChhHHHHHHHHhcCCeEEEEeCCCCC---CCCC-----
Q 028138 9 KRICVFCGSSSGKKATYQEAAVELGKELVERKLDLVYGGGSVGLMGLVSQAVHDGGRHVLGVIPKTLT---PREI----- 80 (213)
Q Consensus 9 ~~I~V~ggs~~~~~~~~~~~A~~lG~~lA~~G~~lv~GGg~~GlM~a~~~ga~~~gG~viGv~P~~~~---~~e~----- 80 (213)
+.|+|. |||.. ++...+.|+++++.|+++|+.||+|++. |+|.+++++|++++|.+|+|+|..+. |.+.
T Consensus 45 ~~iaIv-GsR~~-s~~~~~~a~~l~~~l~~~g~~IVSG~A~-GiD~~ah~~al~~~g~tIaVl~~gld~~yp~~n~~l~~ 121 (220)
T TIGR00732 45 RKVAIV-GTRRP-TKYGERWTRKLAEELAKNGVTIVSGLAL-GIDGIAHKAALKVNGRTIAVLGTGLDQIYPRQNSKLAA 121 (220)
T ss_pred CeEEEE-cCCCC-CHHHHHHHHHHHHHHHhCCCEEEcCchh-hHHHHHHHHHHHcCCCEEEEECCCCccCCchhhHHHHH
Confidence 579999 66654 7777789999999999999999999997 99999999999999999999987542 2210
Q ss_pred --CCCC---Cce-----eeecCCHHHHHHHHHHhcCeEEEecCC--CCcHHHHHHHHHHHHhCCCCCceEEEecCccchH
Q 028138 81 --TGDP---VGE-----VKTVSDMHQRKAEMARQADAFIALPGG--YGTLEELLEVITWAQLGIHRKPVGLLNVDGFYNS 148 (213)
Q Consensus 81 --~~~~---~~~-----~~~~~~~~~R~~~l~~~sDa~IvlpGG--~GTL~Ei~~~~~~~~lg~~~kPiill~~~g~~~~ 148 (213)
..+. +.+ ......|..|++++...||++|++..+ .||+..+-.++. .+|||+.+-. ..+++
T Consensus 122 ~i~~~gglliSe~p~~~~~~~~~f~~RNriia~ls~~vivve~~~~sGtl~ta~~A~~------~gr~v~~~pg-~~~~~ 194 (220)
T TIGR00732 122 KIAENGGLLLSEYPPDTKPIKYNFPKRNRIISGLSRAVLVVEAPLKSGALITARYALE------QGREVFAYPG-DLNSP 194 (220)
T ss_pred HHHHcCCEEEEecCCCCCCCcccHHHHHHHHHHhcCEEEEEECCCCCchHHHHHHHHH------hCCcEEEEcC-CCCCc
Confidence 0000 011 112346789999999999999999997 799999988875 3699999843 35554
Q ss_pred HHHHHHHHHHcCCCCccccCcEEEcCCHHHHHHH
Q 028138 149 LLSFVDKAVDEGFISPTARRIIISAPTAKKLVRQ 182 (213)
Q Consensus 149 l~~~l~~~~~~g~i~~~~~~~i~~~~~~ee~~~~ 182 (213)
..+.-..++.+|. ..+.+++|+++.
T Consensus 195 ~~~G~~~Li~~GA---------~~i~~~~d~~~~ 219 (220)
T TIGR00732 195 ESDGCHKLIEQGA---------ALITSAKDILET 219 (220)
T ss_pred cchHHHHHHHCCC---------EEECCHHHHHHh
Confidence 4444555676764 256788888764
No 6
>PF02481 DNA_processg_A: DNA recombination-mediator protein A; InterPro: IPR003488 The SMF family, of DNA processing chain A, dprA, are a group of bacterial proteins. In Helicobacter pylori, dprA is required for natural chromosomal and plasmid transformation []. It has now been shown that DprA is found to bind cooperatively to single-stranded DNA (ssDNA) and to interact with RecA. In the process, DprA-RecA-ssDNA filaments are produced and these filaments catalyse the homology-dependent formation of joint molecules. While the Escherichia coli SSB protein limits access of RecA to ssDNA, DprA alleviates this barrier. It is proposed that DprA is a new member of the recombination-mediator protein family, dedicated to natural bacterial transformation [].; GO: 0009294 DNA mediated transformation; PDB: 3MAJ_A.
Probab=99.34 E-value=1.9e-11 Score=103.57 Aligned_cols=143 Identities=21% Similarity=0.243 Sum_probs=86.8
Q ss_pred CceEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEcCCCcChhHHHHHHHHhcCCeEEEEeCCCC---CCCCCC---
Q 028138 8 FKRICVFCGSSSGKKATYQEAAVELGKELVERKLDLVYGGGSVGLMGLVSQAVHDGGRHVLGVIPKTL---TPREIT--- 81 (213)
Q Consensus 8 ~~~I~V~ggs~~~~~~~~~~~A~~lG~~lA~~G~~lv~GGg~~GlM~a~~~ga~~~gG~viGv~P~~~---~~~e~~--- 81 (213)
.+.|+|. |||.. ++...+.|+++++.|+++|+.||+|+.. |+..+++++|+++||++|+|+|..+ .|.+..
T Consensus 44 ~~~iaIv-GsR~~-s~~g~~~a~~l~~~l~~~g~~vvSGlA~-GiD~~ah~~al~~~g~tIaVl~~gl~~~yP~~n~~l~ 120 (212)
T PF02481_consen 44 QPSIAIV-GSRNP-SEYGLKFAKKLARELAKAGIVVVSGLAK-GIDAAAHRGALDAGGPTIAVLACGLDNIYPKENRELA 120 (212)
T ss_dssp S-EEEEE---SS---HHHHHHHHHHHHHHHHHT-EEEE---T-THHHHHHHHHTTT---EEEE-SS-TTS-SSGGGHHHH
T ss_pred CceEEEE-cCCCC-CHHHHHHHHHHHHHHhhCCEEEEcCCCC-CHHHHHHHHHHHccCCEEEEECCCcccccchhhHHHH
Confidence 4589999 66764 7888899999999999999999999997 9999999999999999999998655 232210
Q ss_pred -----CC-------CCceeeecCCHHHHHHHHHHhcCeEEEecCC--CCcHHHHHHHHHHHHhCCCCCceEEEecCccch
Q 028138 82 -----GD-------PVGEVKTVSDMHQRKAEMARQADAFIALPGG--YGTLEELLEVITWAQLGIHRKPVGLLNVDGFYN 147 (213)
Q Consensus 82 -----~~-------~~~~~~~~~~~~~R~~~l~~~sDa~IvlpGG--~GTL~Ei~~~~~~~~lg~~~kPiill~~~g~~~ 147 (213)
.+ +...-.....|..|++++...||++||+.-+ .||+.-+-.++.+ +|||+++.. ..++
T Consensus 121 ~~i~~~~glliSe~~p~~~~~~~~f~~RNRiiaaLs~~~vvvea~~~sGt~~ta~~A~~~------gr~v~~vp~-~~~~ 193 (212)
T PF02481_consen 121 ERILDEGGLLISEYPPGTKPSRWRFPERNRIIAALSDAVVVVEAGEKSGTLHTARFALEQ------GRPVFAVPG-PIDD 193 (212)
T ss_dssp HHHHHTT-EEEE-S-TT----TTHHHHHHHHHHHH-S-EEE----TT-THHHHHHHHHHH------T--EEE-----TT-
T ss_pred HHHHhcCcEEEeCCCCCCCcccccChHHHHHHHHhCCeEEEEecCCCChHHHHHHHHHHc------CCeEEEEeC-CCCC
Confidence 00 0111123456689999999999999999855 6999888888753 699998743 3566
Q ss_pred HHHHHHHHHHHcC
Q 028138 148 SLLSFVDKAVDEG 160 (213)
Q Consensus 148 ~l~~~l~~~~~~g 160 (213)
+..+.-.+++++|
T Consensus 194 ~~~~G~~~Li~~G 206 (212)
T PF02481_consen 194 PNSEGNNELIKEG 206 (212)
T ss_dssp GGGHHHHHHHHTT
T ss_pred cccHHHHHHHHcC
Confidence 5555555667666
No 7
>PRK10736 hypothetical protein; Provisional
Probab=99.33 E-value=6.5e-11 Score=107.93 Aligned_cols=158 Identities=15% Similarity=0.186 Sum_probs=120.1
Q ss_pred ceEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEcCCCcChhHHHHHHHHhcCCeEEEEeCCCC---CCCCCC----
Q 028138 9 KRICVFCGSSSGKKATYQEAAVELGKELVERKLDLVYGGGSVGLMGLVSQAVHDGGRHVLGVIPKTL---TPREIT---- 81 (213)
Q Consensus 9 ~~I~V~ggs~~~~~~~~~~~A~~lG~~lA~~G~~lv~GGg~~GlM~a~~~ga~~~gG~viGv~P~~~---~~~e~~---- 81 (213)
+.|+|. |||.. ++...+.++++++.|+++|+.||+|+.. |+..+++++|+++||++|+|++... +|.+..
T Consensus 108 ~~iaiV-GsR~~-s~yg~~~~~~l~~~la~~g~~IVSGlA~-GiD~~AH~~aL~~~g~TIaVlg~Gld~~YP~~n~~L~~ 184 (374)
T PRK10736 108 PQLAVV-GSRAH-SWYGERWGRLFCEELAKNGLTITSGLAR-GIDGVAHRAALQAGGKTIAVLGNGLENIYPRRHARLAE 184 (374)
T ss_pred CeEEEE-CCCCC-CHHHHHHHHHHHHHHHHCCCEEECcchh-hHHHHHHHHHHHcCCCEEEEECCCCCccCCHhHHHHHH
Confidence 479999 67764 7888889999999999999999999997 9999999999999999999987543 232210
Q ss_pred ---C-C-------CCceeeecCCHHHHHHHHHHhcCeEEEecCC--CCcHHHHHHHHHHHHhCCCCCceEEEecCccchH
Q 028138 82 ---G-D-------PVGEVKTVSDMHQRKAEMARQADAFIALPGG--YGTLEELLEVITWAQLGIHRKPVGLLNVDGFYNS 148 (213)
Q Consensus 82 ---~-~-------~~~~~~~~~~~~~R~~~l~~~sDa~IvlpGG--~GTL~Ei~~~~~~~~lg~~~kPiill~~~g~~~~ 148 (213)
. + +...-....+|..||+++...|+++||+--+ .|||.-.-.++. .+|+|+.+-+ ...++
T Consensus 185 ~I~~~~G~liSEyp~~~~p~~~~Fp~RNRIIagLS~~viVvEA~~kSGsliTA~~Al~------~gR~VfavPG-~i~~~ 257 (374)
T PRK10736 185 SIIEQGGALVSEFPLDTPPLAANFPRRNRIISGLSKGVLVVEAALRSGSLVTARCALE------QGRDVFALPG-PIGNP 257 (374)
T ss_pred HHHhcCCEEEECCCCCCCCChhhhhHhhhHHHHhCCeEEEEEeCCCCchHHHHHHHHH------hCCeEEEEcC-CCCCc
Confidence 0 0 0011122457899999999999999999866 689887777664 4799988842 35555
Q ss_pred HHHHHHHHHHcCCCCccccCcEEEcCCHHHHHHHHHh
Q 028138 149 LLSFVDKAVDEGFISPTARRIIISAPTAKKLVRQLEE 185 (213)
Q Consensus 149 l~~~l~~~~~~g~i~~~~~~~i~~~~~~ee~~~~l~~ 185 (213)
.-+--.+++.+|. ..+.+++|+++.+..
T Consensus 258 ~s~G~n~LI~~GA---------~lv~~~~Di~~~l~~ 285 (374)
T PRK10736 258 GSEGPHWLIKQGA---------YLVTSPEDILENLQF 285 (374)
T ss_pred cchhHHHHHHCCC---------EEeCCHHHHHHHhhh
Confidence 5555556777774 468899999998853
No 8
>COG0758 Smf Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake [DNA replication, recombination, and repair / Intracellular trafficking and secretion]
Probab=99.13 E-value=2.3e-09 Score=97.02 Aligned_cols=159 Identities=17% Similarity=0.226 Sum_probs=114.8
Q ss_pred ceEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEcCCCcChhHHHHHHHHhcCCeEEEEeCCCC---CCCCCC----
Q 028138 9 KRICVFCGSSSGKKATYQEAAVELGKELVERKLDLVYGGGSVGLMGLVSQAVHDGGRHVLGVIPKTL---TPREIT---- 81 (213)
Q Consensus 9 ~~I~V~ggs~~~~~~~~~~~A~~lG~~lA~~G~~lv~GGg~~GlM~a~~~ga~~~gG~viGv~P~~~---~~~e~~---- 81 (213)
+.|+|. |||.. ++...+.++.|++.|+++|+.||+|+.. |+..+++++|++++|.+|+|+...+ +|++..
T Consensus 112 ~~vaIV-GsR~~-S~~g~~~~~~~a~~L~~~g~~IvSGlA~-GID~~AH~aaL~~~G~TiaVl~~Gld~iYP~~n~~l~~ 188 (350)
T COG0758 112 PSVAIV-GSRKP-SKYGLDYTRDLAEYLAQNGITIVSGLAR-GIDTEAHKAALNAGGKTIAVLATGLDKIYPRENIKLAE 188 (350)
T ss_pred CceEEE-eCCCC-CHhHHHHHHHHHHHHHhCCeEEEecCcc-eecHHHHHHHHHcCCcEEEEEcCCCCccCChhhHHHHH
Confidence 579999 67765 7788889999999999999999999997 9999999999999999999986543 332210
Q ss_pred ---CC-----C--CceeeecCCHHHHHHHHHHhcCeEEEecCC--CCcHHHHHHHHHHHHhCCCCCceEEEecCccchHH
Q 028138 82 ---GD-----P--VGEVKTVSDMHQRKAEMARQADAFIALPGG--YGTLEELLEVITWAQLGIHRKPVGLLNVDGFYNSL 149 (213)
Q Consensus 82 ---~~-----~--~~~~~~~~~~~~R~~~l~~~sDa~IvlpGG--~GTL~Ei~~~~~~~~lg~~~kPiill~~~g~~~~l 149 (213)
.+ + ...-....+|..||+++...|+++||+-.+ .|+|.=.-.++. .++.|+.+-++ ..++.
T Consensus 189 ~i~~~g~liSEypp~~~p~~~~Fp~RNRiIagLS~gvlVvEA~~kSGSLiTA~~Ale------qgR~VfavPg~-~~~~~ 261 (350)
T COG0758 189 KIAENGLLISEYPPDTEPNKGNFPRRNRLIAGLSDGVLVVEAGLKSGSLITAKYALE------QGRDVFAVPGS-IDNPR 261 (350)
T ss_pred HHHhcCeEEeecCCCCCcccccchHHHHHHHHhcCceEEEecCcccccHHHHHHHHH------cCCeeEEcCCC-ccccc
Confidence 01 0 111233458899999999999999999988 599887777775 46777776442 33332
Q ss_pred HHHHHHHHHcCCCCccccCcEEEcCCHHHHHHHHHhh
Q 028138 150 LSFVDKAVDEGFISPTARRIIISAPTAKKLVRQLEEY 186 (213)
Q Consensus 150 ~~~l~~~~~~g~i~~~~~~~i~~~~~~ee~~~~l~~~ 186 (213)
.+--.+++.+|.. .+.+.+|+++.+...
T Consensus 262 s~G~~~LI~~GA~---------lv~~~~dil~~l~~~ 289 (350)
T COG0758 262 SEGCNKLIKEGAK---------LVTSAEDILEELNAL 289 (350)
T ss_pred ccchHHHHHccch---------hcccHHHHHHHhhhh
Confidence 2222335556632 456667777666553
No 9
>PF12694 MoCo_carrier: Putative molybdenum carrier; InterPro: IPR024755 The structure of proteins in this family contain central beta strands with flanking alpha helices. The structure is similar to that of a molybdenum cofactor carrier protein.; PDB: 3IMK_A.
Probab=96.85 E-value=0.026 Score=45.25 Aligned_cols=93 Identities=22% Similarity=0.216 Sum_probs=53.2
Q ss_pred EEEcCCCcChhHHHHHHHHhcCCeEEEEeCCCCCCCCCC-CCCCc-eeeecCCHHHHHHHHHHhcCeEEEecCCC---Cc
Q 028138 43 LVYGGGSVGLMGLVSQAVHDGGRHVLGVIPKTLTPREIT-GDPVG-EVKTVSDMHQRKAEMARQADAFIALPGGY---GT 117 (213)
Q Consensus 43 lv~GGg~~GlM~a~~~ga~~~gG~viGv~P~~~~~~e~~-~~~~~-~~~~~~~~~~R~~~l~~~sDa~IvlpGG~---GT 117 (213)
||+||- +|+..|+-+.|+++|-..=|-.|.-...++-+ +..|. ......+...|.++.++.||+.++|-=|. ||
T Consensus 1 IiSGGQ-TGvDRAALDaAi~~gi~~GGWcP~GR~aEDG~ip~~Y~L~E~~~~~Y~~RT~~NV~DsDgTlI~~~g~l~GGt 79 (145)
T PF12694_consen 1 IISGGQ-TGVDRAALDAAIAHGIPHGGWCPKGRRAEDGPIPARYPLQETPSSGYRQRTEWNVRDSDGTLIFTRGELTGGT 79 (145)
T ss_dssp EE-----TTHHHHHHHHHHHTT--EE-EE-GGG--TTSS--TTS--EE-SS--HHHHHHHHHHTSSEEEEEESSS--HHH
T ss_pred CccCcc-ccHHHHHHHHHHHcCCCccCcCCCCcccccCcCCccccceecCCCCHHHHHHhhhhhcCeEEEEecCCCCcHH
Confidence 688876 59999999999999988888888755433311 22232 12235778999999999999988887542 55
Q ss_pred HHHHHHHHHHHHhCCCCCceEEEec
Q 028138 118 LEELLEVITWAQLGIHRKPVGLLNV 142 (213)
Q Consensus 118 L~Ei~~~~~~~~lg~~~kPiill~~ 142 (213)
++...++ .++.||+.+++.
T Consensus 80 --~lT~~~a----~~~~KP~l~i~~ 98 (145)
T PF12694_consen 80 --ALTVEFA----RKHGKPCLHIDL 98 (145)
T ss_dssp --HHHHHHH----HHTT--EEEETS
T ss_pred --HHHHHHH----HHhCCCEEEEec
Confidence 3332232 247899998854
No 10
>KOG3614 consensus Ca2+/Mg2+-permeable cation channels (LTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=95.34 E-value=0.35 Score=50.57 Aligned_cols=157 Identities=19% Similarity=0.205 Sum_probs=95.2
Q ss_pred CCceEEEEcCCCCCC-CHHHHHHHHH-HHHHHHHCCCeEEEcCCCcChhHHHHHHHHhcC-----CeE--EEEeCCCCCC
Q 028138 7 RFKRICVFCGSSSGK-KATYQEAAVE-LGKELVERKLDLVYGGGSVGLMGLVSQAVHDGG-----RHV--LGVIPKTLTP 77 (213)
Q Consensus 7 ~~~~I~V~ggs~~~~-~~~~~~~A~~-lG~~lA~~G~~lv~GGg~~GlM~a~~~ga~~~g-----G~v--iGv~P~~~~~ 77 (213)
..-.|.|-||..+-. .|.+.+.-++ |-+..-..|.=|+|||-..|+|.-|..++++++ +++ |||-|.....
T Consensus 117 P~LvISV~GG~~nF~L~pkl~~~frkGLvkaAqtTGAWIiTsG~~tGv~khVg~Al~dh~~~s~~~~ivaiGiApWGvv~ 196 (1381)
T KOG3614|consen 117 PKLVISVHGGLQNFELQPKLKSVFRKGLIKAAQTTGAWIITSGLDTGVMKHVGSALRDHSLASSGGKIVAIGIAPWGIVK 196 (1381)
T ss_pred CcEEEEEecCCCCccccHHHHHHHHHHHHHHHhhcCeEEEecCcccchHHHHHHHHHhccchhccCceEEEeeccceeee
Confidence 334799999887643 5676544333 333333369999999999999999999999864 233 6765542211
Q ss_pred C----------------CCCCC-------CCceeeecC---------CHHHHHHH--HHH----hcC-------eEEEec
Q 028138 78 R----------------EITGD-------PVGEVKTVS---------DMHQRKAE--MAR----QAD-------AFIALP 112 (213)
Q Consensus 78 ~----------------e~~~~-------~~~~~~~~~---------~~~~R~~~--l~~----~sD-------a~Ivlp 112 (213)
+ ..+.+ .....+.++ ...-|+++ -+. .+. .++++.
T Consensus 197 nr~~lI~~d~~~~Y~~~~~~~~~L~~Ln~nhShFiLvDnGTvGkygae~~lR~~LEk~Is~q~~~~~~~~~iPvvc~v~e 276 (1381)
T KOG3614|consen 197 NRDDLIGGDFTVSYQTDDNPLNKLTILNNNHSHFILVDNGTVGKYGAETKLRLRLEKYISLQKINSGGTGKIPVVCLVLE 276 (1381)
T ss_pred chhhhccCCcceeeeecCCCCcceeeccCCCceeEEecCCccCccchHHHHHHhchhhHhhhccCCCCCCccceEEEEec
Confidence 0 00011 111111111 11233332 110 111 578999
Q ss_pred CCCCcHHHHHHHHHHHHhCCCCCceEEEecCccchHHHHHHH-HHHHcCCCCcccc
Q 028138 113 GGYGTLEELLEVITWAQLGIHRKPVGLLNVDGFYNSLLSFVD-KAVDEGFISPTAR 167 (213)
Q Consensus 113 GG~GTL~Ei~~~~~~~~lg~~~kPiill~~~g~~~~l~~~l~-~~~~~g~i~~~~~ 167 (213)
||.+|+.=+.+..+. +.+.|++++.+.|--.+++.++- ...+.|.++....
T Consensus 277 Gg~nti~~I~~~v~~----~~~iPvvVc~GSGraADilA~~~~~~~~~g~l~~~~~ 328 (1381)
T KOG3614|consen 277 GGPNTLAIILDYVTD----KPPIPVVVCAGSGRAADILAFAHEEHGAPGILSDAER 328 (1381)
T ss_pred CCchHHHHHHHHhcc----CCCCceEEEcCCchHHHHHHHHHHhhcCCCcccHHHH
Confidence 999999988776642 34579999999998888888774 4555666555443
No 11
>PF05014 Nuc_deoxyrib_tr: Nucleoside 2-deoxyribosyltransferase; InterPro: IPR007710 Nucleoside 2-deoxyribosyltransferase (2.4.2.6 from EC) catalyses the cleavage of the glycosidic bonds of 2-deoxyribonucleosides. Nucleoside 2-deoxyribosyltransferases can be divided into two groups based on their substrate specificity: class I enzymes are specific for the transfer of deoxyribose between two purines, while class II enzymes will transfer the deoxyribose between either purines or pyrimidines. The structure of the class I [] and class II [] enzymes are very similar. In class I enzymes, the purine base shields the active site from solvent, which the smaller pyrimidine base cannot do, while in class II enzymes the active site is shielded by a loop (residues 48-62). Both classes of enzymes are found in various Lactobacillus species and participate in nucleoside recycling in these microorganisms. This entry represents both classes of enzymes.; GO: 0050144 nucleoside deoxyribosyltransferase activity, 0070694 deoxyribonucleoside 5'-monophosphate N-glycosidase activity, 0009159 deoxyribonucleoside monophosphate catabolic process; PDB: 1S2L_A 1S2D_C 1S2I_A 1S3F_B 1S2G_C 2A0K_A 2F67_A 2F64_B 2F62_A 2F2T_A ....
Probab=94.86 E-value=0.064 Score=40.47 Aligned_cols=47 Identities=36% Similarity=0.352 Sum_probs=38.5
Q ss_pred cCCHHHHHHHHHHhcCeEEEecCC----CCcHHHHHHHHHHHHhCCCCCceEEEecC
Q 028138 91 VSDMHQRKAEMARQADAFIALPGG----YGTLEELLEVITWAQLGIHRKPVGLLNVD 143 (213)
Q Consensus 91 ~~~~~~R~~~l~~~sDa~IvlpGG----~GTL~Ei~~~~~~~~lg~~~kPiill~~~ 143 (213)
.....+|....++.||++|+.-.+ .||.-|+..++. .+|||+++..+
T Consensus 48 ~~~i~~~d~~~i~~~D~via~l~~~~~d~Gt~~ElG~A~a------lgkpv~~~~~d 98 (113)
T PF05014_consen 48 AREIFERDLEGIRECDIVIANLDGFRPDSGTAFELGYAYA------LGKPVILLTED 98 (113)
T ss_dssp HHHHHHHHHHHHHHSSEEEEEECSSS--HHHHHHHHHHHH------TTSEEEEEECC
T ss_pred HHHHHHHHHHHHHHCCEEEEECCCCCCCCcHHHHHHHHHH------CCCEEEEEEcC
Confidence 344577888889999998888777 899999999886 36999999654
No 12
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=93.92 E-value=1.8 Score=37.50 Aligned_cols=123 Identities=24% Similarity=0.265 Sum_probs=66.9
Q ss_pred CCCeEEEcCCCcChhHHHHHHHHhcCC-eEEEEeCCCCCCCCCCCCCCceeeecCCHHHHHHHHHHhcCeEEEecCCCCc
Q 028138 39 RKLDLVYGGGSVGLMGLVSQAVHDGGR-HVLGVIPKTLTPREITGDPVGEVKTVSDMHQRKAEMARQADAFIALPGGYGT 117 (213)
Q Consensus 39 ~G~~lv~GGg~~GlM~a~~~ga~~~gG-~viGv~P~~~~~~e~~~~~~~~~~~~~~~~~R~~~l~~~sDa~IvlpGG~GT 117 (213)
.++.+||=||. |.- .+.+.+.+..+ .++-+-+... +.....+ .+.-+. ...-.-++..||++|-. ||.+|
T Consensus 192 ~~~iLv~~gg~-~~~-~~~~~l~~~~~~~~~v~g~~~~---~~~~~ni-~~~~~~--~~~~~~~m~~ad~vIs~-~G~~t 262 (318)
T PF13528_consen 192 EPKILVYFGGG-GPG-DLIEALKALPDYQFIVFGPNAA---DPRPGNI-HVRPFS--TPDFAELMAAADLVISK-GGYTT 262 (318)
T ss_pred CCEEEEEeCCC-cHH-HHHHHHHhCCCCeEEEEcCCcc---cccCCCE-EEeecC--hHHHHHHHHhCCEEEEC-CCHHH
Confidence 56777876664 555 55555555553 3333322211 1111111 122111 12223346889988776 88999
Q ss_pred HHHHHHHHHHHHhCCCCCceEEEecCccchHHHHHHHHHHHcCCCCccccCcEEE-cCCHHHHHHHHHh
Q 028138 118 LEELLEVITWAQLGIHRKPVGLLNVDGFYNSLLSFVDKAVDEGFISPTARRIIIS-APTAKKLVRQLEE 185 (213)
Q Consensus 118 L~Ei~~~~~~~~lg~~~kPiill~~~g~~~~l~~~l~~~~~~g~i~~~~~~~i~~-~~~~ee~~~~l~~ 185 (213)
+.|+.. .++|++++-..++++.... .+.+.+.|... .+.. .-+++.+.++|++
T Consensus 263 ~~Ea~~---------~g~P~l~ip~~~~~EQ~~~-a~~l~~~G~~~-----~~~~~~~~~~~l~~~l~~ 316 (318)
T PF13528_consen 263 ISEALA---------LGKPALVIPRPGQDEQEYN-ARKLEELGLGI-----VLSQEDLTPERLAEFLER 316 (318)
T ss_pred HHHHHH---------cCCCEEEEeCCCCchHHHH-HHHHHHCCCeE-----EcccccCCHHHHHHHHhc
Confidence 888753 4799999977677766443 23355555431 1111 1267888888776
No 13
>PF11071 DUF2872: Protein of unknown function (DUF2872); InterPro: IPR019884 This entry represents a family of uncharacterised proteins, including YtoQ from Bacillus subtilis. This family shows some sequence similarity to a family of nucleoside 2-deoxyribosyltransferases (COG3613 as iterated through CDD), but sufficiently remote that PSI-BLAST starting from YtoQ and exploring outwards does not discover the relationship.
Probab=93.87 E-value=0.71 Score=36.58 Aligned_cols=71 Identities=18% Similarity=0.200 Sum_probs=50.4
Q ss_pred HHHHHHHHHhcCeEEEecCC----CCcHHHHHHHHHHHHhCCCCCceEEEecCccchHHHHHHHHHHHcCCCCccccCcE
Q 028138 95 HQRKAEMARQADAFIALPGG----YGTLEELLEVITWAQLGIHRKPVGLLNVDGFYNSLLSFVDKAVDEGFISPTARRII 170 (213)
Q Consensus 95 ~~R~~~l~~~sDa~IvlpGG----~GTL~Ei~~~~~~~~lg~~~kPiill~~~g~~~~l~~~l~~~~~~g~i~~~~~~~i 170 (213)
.-|-+.+++.||.+|+.-|- +.|--....+.. .+||+|++.....--+|.+. +. .-.
T Consensus 63 ~iRT~~li~~aDvVVvrFGekYKQWNaAfDAg~a~A------lgKplI~lh~~~~~HpLKEv-da------------~A~ 123 (141)
T PF11071_consen 63 AIRTRTLIEKADVVVVRFGEKYKQWNAAFDAGYAAA------LGKPLITLHPEELHHPLKEV-DA------------AAL 123 (141)
T ss_pred HHHHHHHHhhCCEEEEEechHHHHHHHHhhHHHHHH------cCCCeEEecchhccccHHHH-hH------------hhH
Confidence 57889999999999998886 344333333333 47999999877677776663 21 123
Q ss_pred EEcCCHHHHHHHHH
Q 028138 171 ISAPTAKKLVRQLE 184 (213)
Q Consensus 171 ~~~~~~ee~~~~l~ 184 (213)
..+++|+.+++.|+
T Consensus 124 a~~et~~Qvv~iL~ 137 (141)
T PF11071_consen 124 AVAETPEQVVEILR 137 (141)
T ss_pred hhhCCHHHHHHHHH
Confidence 47999999999875
No 14
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=92.11 E-value=7.5 Score=33.83 Aligned_cols=73 Identities=19% Similarity=0.140 Sum_probs=39.0
Q ss_pred HHHHhcCeEEEecCCCCcHHHHHHHHHHHHhCCCCCceEEEecCccchHHHHHHHHHHHcCCCCccccCcEEEcC--CHH
Q 028138 100 EMARQADAFIALPGGYGTLEELLEVITWAQLGIHRKPVGLLNVDGFYNSLLSFVDKAVDEGFISPTARRIIISAP--TAK 177 (213)
Q Consensus 100 ~l~~~sDa~IvlpGG~GTL~Ei~~~~~~~~lg~~~kPiill~~~g~~~~l~~~l~~~~~~g~i~~~~~~~i~~~~--~~e 177 (213)
-++..||++|. ++|..|+-|. +. .++|+|..+..+.-.......+.+.+. ....+.-.. +++
T Consensus 246 ~~l~~ad~~v~-~~g~~~l~Ea---~~------~g~Pvv~~~~~~~~~~~~~~~~~i~~~------~~G~~~~~~~~~~~ 309 (348)
T TIGR01133 246 AAYAAADLVIS-RAGASTVAEL---AA------AGVPAILIPYPYAADDQYYNAKFLEDL------GAGLVIRQKELLPE 309 (348)
T ss_pred HHHHhCCEEEE-CCChhHHHHH---HH------cCCCEEEeeCCCCccchhhHHHHHHHC------CCEEEEecccCCHH
Confidence 36688999886 4454565554 43 479999986543221111111112111 112222233 489
Q ss_pred HHHHHHHhhcC
Q 028138 178 KLVRQLEEYVP 188 (213)
Q Consensus 178 e~~~~l~~~~~ 188 (213)
++.+.|.+...
T Consensus 310 ~l~~~i~~ll~ 320 (348)
T TIGR01133 310 KLLEALLKLLL 320 (348)
T ss_pred HHHHHHHHHHc
Confidence 99888887653
No 15
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=92.07 E-value=4.4 Score=36.57 Aligned_cols=72 Identities=24% Similarity=0.233 Sum_probs=43.0
Q ss_pred HHHHHHHhcCeEEEecCCCCcHHHHHHHHHHHHhCCCCCceEEEecCccchHHHHHHHHHHHcCCCCccccCcEEEcCCH
Q 028138 97 RKAEMARQADAFIALPGGYGTLEELLEVITWAQLGIHRKPVGLLNVDGFYNSLLSFVDKAVDEGFISPTARRIIISAPTA 176 (213)
Q Consensus 97 R~~~l~~~sDa~IvlpGG~GTL~Ei~~~~~~~~lg~~~kPiill~~~g~~~~l~~~l~~~~~~g~i~~~~~~~i~~~~~~ 176 (213)
....++..||++|.-+| .+|+.|. +. .++|+|+.+.-. ....- -.+.+.+.|. -..+.|+
T Consensus 275 ~~~~l~~aaDv~V~~~g-~~ti~EA---ma------~g~PvI~~~~~p-gqe~g-n~~~i~~~g~--------g~~~~~~ 334 (382)
T PLN02605 275 NMEEWMGACDCIITKAG-PGTIAEA---LI------RGLPIILNGYIP-GQEEG-NVPYVVDNGF--------GAFSESP 334 (382)
T ss_pred cHHHHHHhCCEEEECCC-cchHHHH---HH------cCCCEEEecCCC-ccchh-hHHHHHhCCc--------eeecCCH
Confidence 44557799999997555 4786655 43 479999987311 01110 1122333332 1245899
Q ss_pred HHHHHHHHhhcC
Q 028138 177 KKLVRQLEEYVP 188 (213)
Q Consensus 177 ee~~~~l~~~~~ 188 (213)
+++.+.|.+...
T Consensus 335 ~~la~~i~~ll~ 346 (382)
T PLN02605 335 KEIARIVAEWFG 346 (382)
T ss_pred HHHHHHHHHHHc
Confidence 999998887644
No 16
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=91.69 E-value=9.6 Score=34.17 Aligned_cols=77 Identities=17% Similarity=0.250 Sum_probs=52.4
Q ss_pred HHHhcCeEEEecCCCCcHHHHHHHHHHHHhCCCCCceEEEecCccchHHHHHHHHHHHcCCCCccccC--c-----EEEc
Q 028138 101 MARQADAFIALPGGYGTLEELLEVITWAQLGIHRKPVGLLNVDGFYNSLLSFVDKAVDEGFISPTARR--I-----IISA 173 (213)
Q Consensus 101 l~~~sDa~IvlpGG~GTL~Ei~~~~~~~~lg~~~kPiill~~~g~~~~l~~~l~~~~~~g~i~~~~~~--~-----i~~~ 173 (213)
++..||++||-+-.+-=+.|. ++ .++||.++...+--..+..+++.|.+.|.+..-... . +.-.
T Consensus 225 ~La~ad~i~VT~DSvSMvsEA---~~------tG~pV~v~~l~~~~~r~~r~~~~L~~~g~~r~~~~~~~~~~~~~~~pl 295 (311)
T PF06258_consen 225 FLAAADAIVVTEDSVSMVSEA---AA------TGKPVYVLPLPGRSGRFRRFHQSLEERGAVRPFTGWRDLEQWTPYEPL 295 (311)
T ss_pred HHHhCCEEEEcCccHHHHHHH---HH------cCCCEEEecCCCcchHHHHHHHHHHHCCCEEECCCcccccccccCCCc
Confidence 568899999988766555544 43 479999998877556677788889999988654333 1 2334
Q ss_pred CCHHHHHHHHHhh
Q 028138 174 PTAKKLVRQLEEY 186 (213)
Q Consensus 174 ~~~ee~~~~l~~~ 186 (213)
++.+.+.+.|.+.
T Consensus 296 ~et~r~A~~i~~r 308 (311)
T PF06258_consen 296 DETDRVAAEIRER 308 (311)
T ss_pred cHHHHHHHHHHHH
Confidence 5555566665543
No 17
>COG3660 Predicted nucleoside-diphosphate-sugar epimerase [Cell envelope biogenesis, outer membrane]
Probab=91.56 E-value=4.1 Score=36.29 Aligned_cols=132 Identities=17% Similarity=0.187 Sum_probs=72.8
Q ss_pred cCCceEEEEcCCCCCCCHHHHHHHHHH----HHHHHHCCCeEEEcCCCcChhHHHHHHHHhcC-CeEEEE-eCCCCCCCC
Q 028138 6 SRFKRICVFCGSSSGKKATYQEAAVEL----GKELVERKLDLVYGGGSVGLMGLVSQAVHDGG-RHVLGV-IPKTLTPRE 79 (213)
Q Consensus 6 ~~~~~I~V~ggs~~~~~~~~~~~A~~l----G~~lA~~G~~lv~GGg~~GlM~a~~~ga~~~g-G~viGv-~P~~~~~~e 79 (213)
....+|+|+-|.....-+-..+.|.++ -+.|.+.|+.++---.+ =-...+.. -+... ..+-|+ -|+. +
T Consensus 159 ~~rq~vAVlVGg~nk~f~~~~d~a~q~~~~l~k~l~~~g~~~lisfSR-RTp~~~~s-~l~~~l~s~~~i~w~~~----d 232 (329)
T COG3660 159 LPRQRVAVLVGGNNKAFVFQEDKAHQFASLLVKILENQGGSFLISFSR-RTPDTVKS-ILKNNLNSSPGIVWNNE----D 232 (329)
T ss_pred CCCceEEEEecCCCCCCccCHHHHHHHHHHHHHHHHhCCceEEEEeec-CCcHHHHH-HHHhccccCceeEeCCC----C
Confidence 344578887776654322223334444 44444466666544443 33333322 22222 122233 2221 1
Q ss_pred CCCCCCceeeecCCHHHHHHHHHHhcCeEEEecCCCCcHHHHHHHHHHHHhCCCCCceEEEecCcc-chHHHHHHHHHHH
Q 028138 80 ITGDPVGEVKTVSDMHQRKAEMARQADAFIALPGGYGTLEELLEVITWAQLGIHRKPVGLLNVDGF-YNSLLSFVDKAVD 158 (213)
Q Consensus 80 ~~~~~~~~~~~~~~~~~R~~~l~~~sDa~IvlpGG~GTL~Ei~~~~~~~~lg~~~kPiill~~~g~-~~~l~~~l~~~~~ 158 (213)
...|+|.+ |+..+|++|+---.+.-..|.+ + .+|||.++-..++ -..+.-|++++++
T Consensus 233 ~g~NPY~~-------------~La~Adyii~TaDSinM~sEAa---s------TgkPv~~~~~~~~~s~K~r~Fi~~L~e 290 (329)
T COG3660 233 TGYNPYID-------------MLAAADYIISTADSINMCSEAA---S------TGKPVFILEPPNFNSLKFRIFIEQLVE 290 (329)
T ss_pred CCCCchHH-------------HHhhcceEEEecchhhhhHHHh---c------cCCCeEEEecCCcchHHHHHHHHHHHH
Confidence 23455532 6688999999887777766654 2 4799999987777 4566667788887
Q ss_pred cCCCCcc
Q 028138 159 EGFISPT 165 (213)
Q Consensus 159 ~g~i~~~ 165 (213)
++..+.-
T Consensus 291 q~~AR~f 297 (329)
T COG3660 291 QKIARPF 297 (329)
T ss_pred hhhcccc
Confidence 6655433
No 18
>PF06908 DUF1273: Protein of unknown function (DUF1273); InterPro: IPR024718 This entry represents a functionally uncharacterised domain.; PDB: 2NX2_A.
Probab=91.40 E-value=2.8 Score=34.67 Aligned_cols=132 Identities=20% Similarity=0.261 Sum_probs=59.8
Q ss_pred CceEEEEcCCCCC-------CCHHHHHHHHHHHHHH---HHCCCeE-EEcCCCcChhHHHHHHHHhcCC-----eEEEEe
Q 028138 8 FKRICVFCGSSSG-------KKATYQEAAVELGKEL---VERKLDL-VYGGGSVGLMGLVSQAVHDGGR-----HVLGVI 71 (213)
Q Consensus 8 ~~~I~V~ggs~~~-------~~~~~~~~A~~lG~~l---A~~G~~l-v~GGg~~GlM~a~~~ga~~~gG-----~viGv~ 71 (213)
|+++||- |.|+- .+|.+...-..|-+.| -+.|+.- ++||. .|+.--++..+++... +.+-++
T Consensus 1 M~~~~~T-GyR~~eL~~f~~~~~~~~~ik~~L~~~i~~lie~G~~~fi~Gga-lG~D~waae~vl~LK~~yp~ikL~~v~ 78 (177)
T PF06908_consen 1 MKRCCFT-GYRPYELGIFNEKDPKIQVIKKALKKQIIELIEEGVRWFITGGA-LGVDLWAAEVVLELKKEYPEIKLALVL 78 (177)
T ss_dssp --EEEEE-E--GGGGT--SS--HHHHHHHHHHHHHHHHHHTTT--EEEE----TTHHHHHHHHHHTTTTT-TT-EEEEEE
T ss_pred CeEEEEE-ecChhhcCCCCCCchhHHHHHHHHHHHHHHHHHCCCCEEEECCc-ccHHHHHHHHHHHHHhhhhheEEEEEE
Confidence 3466666 44442 3666555555555433 3468776 56665 5999999999988543 445556
Q ss_pred CCCCCCCCCCC----------CCCceeee--------cCCHHHHHHHHHHhcCeEEEecCC--CCcHHHHHHHHHHHHhC
Q 028138 72 PKTLTPREITG----------DPVGEVKT--------VSDMHQRKAEMARQADAFIALPGG--YGTLEELLEVITWAQLG 131 (213)
Q Consensus 72 P~~~~~~e~~~----------~~~~~~~~--------~~~~~~R~~~l~~~sDa~IvlpGG--~GTL~Ei~~~~~~~~lg 131 (213)
|=......... ...+.+.. ..-|..|++.|+++||.+|++==| -|+..=......-.+ .
T Consensus 79 Pf~~q~~~W~~~~q~~y~~il~~aD~v~~vs~~~Y~~~~~~~~rn~fMvdhsd~~iavyD~~~~G~t~~~~~~a~~~~-~ 157 (177)
T PF06908_consen 79 PFENQGNNWNEANQERYQSILEQADFVVVVSERPYYSPGQLQKRNRFMVDHSDGLIAVYDGEPEGGTKYTVRAAKKYQ-E 157 (177)
T ss_dssp SSB-TTTTS-HHHHHHHHHHHHH-SEEEESSSSB---HHHHHHHHHHHHHHSSEEEEE--TTT--TTHHHHHHHHHHH-H
T ss_pred cccchhhcCCHHHHHHHHHHHHhCCEEEEccCCCCCCHHHHHHHhHHHHhCCCeEEEEEeCCCCCcchHHHHHHHHHh-h
Confidence 63222111110 00122221 123579999999999988887533 233222222221111 1
Q ss_pred CCCCceEEEec
Q 028138 132 IHRKPVGLLNV 142 (213)
Q Consensus 132 ~~~kPiill~~ 142 (213)
.++-||.+++.
T Consensus 158 ~~~y~i~~I~~ 168 (177)
T PF06908_consen 158 QKGYPIDLIDP 168 (177)
T ss_dssp HH---EEEE-H
T ss_pred ccCCeEEEecH
Confidence 24678888753
No 19
>TIGR03646 YtoQ_fam YtoQ family protein. Members of this family are uncharacterized proteins, including YtoQ from Bacillus subtilis. This family shows some sequence similarity to a family of nucleoside 2-deoxyribosyltransferases (COG3613 as iterated through CDD), but sufficiently remote that PSI-BLAST starting from YtoQ and exploring outwards does not discover the relationship.
Probab=91.33 E-value=4.9 Score=31.96 Aligned_cols=71 Identities=20% Similarity=0.266 Sum_probs=49.0
Q ss_pred HHHHHHHHHhcCeEEEecCC----CCcHHHHHHHHHHHHhCCCCCceEEEecCccchHHHHHHHHHHHcCCCCccccCcE
Q 028138 95 HQRKAEMARQADAFIALPGG----YGTLEELLEVITWAQLGIHRKPVGLLNVDGFYNSLLSFVDKAVDEGFISPTARRII 170 (213)
Q Consensus 95 ~~R~~~l~~~sDa~IvlpGG----~GTL~Ei~~~~~~~~lg~~~kPiill~~~g~~~~l~~~l~~~~~~g~i~~~~~~~i 170 (213)
..|-+.+++.||.+|+.-|- +.+--....+.+ .+||+|++.....--+|.+. +. .-.
T Consensus 66 aiRT~~li~~aDvvVvrFGekYKQWNaAfDAg~aaA------lgKplI~lh~~~~~HpLKEv-da------------aA~ 126 (144)
T TIGR03646 66 NIRTRKLIEKADVVIALFGEKYKQWNAAFDAGYAAA------LGKPLIILRPEELIHPLKEV-DN------------KAQ 126 (144)
T ss_pred hHHHHHHHhhCCEEEEEechHHHHHHHHhhHHHHHH------cCCCeEEecchhccccHHHH-hH------------HHH
Confidence 57888899999999998875 233333333332 36999999877666666653 21 113
Q ss_pred EEcCCHHHHHHHHH
Q 028138 171 ISAPTAKKLVRQLE 184 (213)
Q Consensus 171 ~~~~~~ee~~~~l~ 184 (213)
..+++|+.+++.|+
T Consensus 127 avaetp~Qvv~iL~ 140 (144)
T TIGR03646 127 AVVETPEQAIETLK 140 (144)
T ss_pred HHhcCHHHHHHHHH
Confidence 47899999999775
No 20
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=91.17 E-value=12 Score=34.26 Aligned_cols=83 Identities=20% Similarity=0.116 Sum_probs=48.3
Q ss_pred cCCHHHHHHHHHHhcCeEEEecCCCCcHHHHHHHHHHHHhCCCCCceEEEecCccc--hHHHHHHHHHHHcCCCCccccC
Q 028138 91 VSDMHQRKAEMARQADAFIALPGGYGTLEELLEVITWAQLGIHRKPVGLLNVDGFY--NSLLSFVDKAVDEGFISPTARR 168 (213)
Q Consensus 91 ~~~~~~R~~~l~~~sDa~IvlpGG~GTL~Ei~~~~~~~~lg~~~kPiill~~~g~~--~~l~~~l~~~~~~g~i~~~~~~ 168 (213)
...|.......+..||.+|.=+| ..|+.|++. .++|.|++-.. ++ ++=..-.+.+.+.|.-.
T Consensus 239 v~~f~~dm~~~~~~ADLvIsRaG-a~Ti~E~~a---------~g~P~IliP~p-~~~~~~Q~~NA~~l~~~gaa~----- 302 (357)
T COG0707 239 VLPFIDDMAALLAAADLVISRAG-ALTIAELLA---------LGVPAILVPYP-PGADGHQEYNAKFLEKAGAAL----- 302 (357)
T ss_pred EeeHHhhHHHHHHhccEEEeCCc-ccHHHHHHH---------hCCCEEEeCCC-CCccchHHHHHHHHHhCCCEE-----
Confidence 34455556667788998877655 579999964 36999999542 44 22221223355555421
Q ss_pred cEEEcC-CHHHHHHHHHhhcCC
Q 028138 169 IIISAP-TAKKLVRQLEEYVPE 189 (213)
Q Consensus 169 ~i~~~~-~~ee~~~~l~~~~~~ 189 (213)
.+.-.+ +++++.+.|.+....
T Consensus 303 ~i~~~~lt~~~l~~~i~~l~~~ 324 (357)
T COG0707 303 VIRQSELTPEKLAELILRLLSN 324 (357)
T ss_pred EeccccCCHHHHHHHHHHHhcC
Confidence 111112 467888888776543
No 21
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=90.34 E-value=7.3 Score=34.78 Aligned_cols=76 Identities=18% Similarity=0.147 Sum_probs=43.2
Q ss_pred CHHHHHHHHHHhcCeEEEecCCCCcHHHHHHHHHHHHhCCCCCceEEEecCccchHHHHHHHHHHHcCCCCccccCcEEE
Q 028138 93 DMHQRKAEMARQADAFIALPGGYGTLEELLEVITWAQLGIHRKPVGLLNVDGFYNSLLSFVDKAVDEGFISPTARRIIIS 172 (213)
Q Consensus 93 ~~~~R~~~l~~~sDa~IvlpGG~GTL~Ei~~~~~~~~lg~~~kPiill~~~g~~~~l~~~l~~~~~~g~i~~~~~~~i~~ 172 (213)
++.....-++..||++|.-+|| .|+.| ++. .++|+|+.+..+..+. +..+.+.+.|+ ...
T Consensus 262 g~~~~~~~l~~~aD~~v~~~gg-~t~~E---A~a------~g~PvI~~~~~~g~~~--~n~~~~~~~G~--------~~~ 321 (380)
T PRK13609 262 GYVENIDELFRVTSCMITKPGG-ITLSE---AAA------LGVPVILYKPVPGQEK--ENAMYFERKGA--------AVV 321 (380)
T ss_pred echhhHHHHHHhccEEEeCCCc-hHHHH---HHH------hCCCEEECCCCCCcch--HHHHHHHhCCc--------EEE
Confidence 4434444567899988865554 45544 443 3799988764222211 11122333443 345
Q ss_pred cCCHHHHHHHHHhhcC
Q 028138 173 APTAKKLVRQLEEYVP 188 (213)
Q Consensus 173 ~~~~ee~~~~l~~~~~ 188 (213)
..|++++.+.|.+...
T Consensus 322 ~~~~~~l~~~i~~ll~ 337 (380)
T PRK13609 322 IRDDEEVFAKTEALLQ 337 (380)
T ss_pred ECCHHHHHHHHHHHHC
Confidence 6788888888877643
No 22
>PRK10565 putative carbohydrate kinase; Provisional
Probab=90.25 E-value=1.3 Score=42.27 Aligned_cols=127 Identities=19% Similarity=0.170 Sum_probs=65.9
Q ss_pred CCCeEEEcCCCcChhHHH---HHHHHhcC-CeEEEEeCCCCCCCCCCCCCCceeeecCCHHHHHHHHHHhcCeEEEecCC
Q 028138 39 RKLDLVYGGGSVGLMGLV---SQAVHDGG-RHVLGVIPKTLTPREITGDPVGEVKTVSDMHQRKAEMARQADAFIALPGG 114 (213)
Q Consensus 39 ~G~~lv~GGg~~GlM~a~---~~ga~~~g-G~viGv~P~~~~~~e~~~~~~~~~~~~~~~~~R~~~l~~~sDa~IvlpGG 114 (213)
.|+.+|.||.. +.++|+ +++|+..| |.|.=+.|....+ ......-++++.+...+.-.-+...+|++++=||
T Consensus 254 ~G~vliigGs~-~~~GA~~Laa~aAlr~GaGlv~~~~~~~~~~--~~~~~~Pe~~~~~~~~~~~~~~~~~~~a~viGpG- 329 (508)
T PRK10565 254 HGRLLIIGGDH-GTAGAIRMAGEAALRSGAGLVRVLTRSENIA--PLLTARPELMVHELTPDSLEESLEWADVVVIGPG- 329 (508)
T ss_pred CCeEEEEECCC-CCccHHHHHHHHHHHhCCCeEEEEeChhhHH--HHhhcCceeEEecCCHhHHHHHhhcCCEEEEeCC-
Confidence 58999999975 666664 66677766 5665555643211 0111122333222111112223467899887776
Q ss_pred CCcHHHHHHHHHHHHhCCCCCceEEEecCccchHHHHHHHHHHHcCCCCccccCcEEEcCCHHHHHHHHH
Q 028138 115 YGTLEELLEVITWAQLGIHRKPVGLLNVDGFYNSLLSFVDKAVDEGFISPTARRIIISAPTAKKLVRQLE 184 (213)
Q Consensus 115 ~GTL~Ei~~~~~~~~lg~~~kPiill~~~g~~~~l~~~l~~~~~~g~i~~~~~~~i~~~~~~ee~~~~l~ 184 (213)
.|+-++...++. .+...++|+| ++.++. .++.. ... . .....++..+.|+-..+.
T Consensus 330 lg~~~~~~~~~~--~~~~~~~P~V-LDAdaL-----~ll~~---~~~-~---~~~~VLTPh~gE~~rL~~ 384 (508)
T PRK10565 330 LGQQEWGKKALQ--KVENFRKPML-WDADAL-----NLLAI---NPD-K---RHNRVITPHPGEAARLLG 384 (508)
T ss_pred CCCCHHHHHHHH--HHHhcCCCEE-EEchHH-----HHHhh---Ccc-c---cCCeEECCCHHHHHHHhC
Confidence 677555544432 2223468864 576652 22221 100 0 113467777777776653
No 23
>PF10686 DUF2493: Protein of unknown function (DUF2493); InterPro: IPR019627 This entry is represented by Mycobacteriophage D29, Gp61. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members of this family are mainly Proteobacteria. The function is not known.
Probab=90.21 E-value=3.8 Score=28.76 Aligned_cols=62 Identities=18% Similarity=0.201 Sum_probs=44.5
Q ss_pred ceEEEEcCCCCCCCHHHHHHHHHHHHHHHHC-CCeEEEcCCCcChhHHHHHHHHhcCCeEEEEeCC
Q 028138 9 KRICVFCGSSSGKKATYQEAAVELGKELVER-KLDLVYGGGSVGLMGLVSQAVHDGGRHVLGVIPK 73 (213)
Q Consensus 9 ~~I~V~ggs~~~~~~~~~~~A~~lG~~lA~~-G~~lv~GGg~~GlM~a~~~ga~~~gG~viGv~P~ 73 (213)
++|.|- |++.-.|-. ..-..|-+.+++. ...||+||.+.|....+.+=|.+.|-.++-+-|+
T Consensus 4 ~rVli~-GgR~~~D~~--~i~~~Ld~~~~~~~~~~lvhGga~~GaD~iA~~wA~~~gv~~~~~~ad 66 (71)
T PF10686_consen 4 MRVLIT-GGRDWTDHE--LIWAALDKVHARHPDMVLVHGGAPKGADRIAARWARERGVPVIRFPAD 66 (71)
T ss_pred CEEEEE-ECCccccHH--HHHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHHHCCCeeEEeCcC
Confidence 355554 666543433 3445677777774 6778999995599999999999998888877555
No 24
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=90.10 E-value=6.5 Score=35.28 Aligned_cols=72 Identities=19% Similarity=0.227 Sum_probs=42.2
Q ss_pred HHHHhcCeEEEecCCCCcHHHHHHHHHHHHhCCCCCceEEEecCccchHHHHHHHHHHHcCCCCccccCcEEEcCCHHHH
Q 028138 100 EMARQADAFIALPGGYGTLEELLEVITWAQLGIHRKPVGLLNVDGFYNSLLSFVDKAVDEGFISPTARRIIISAPTAKKL 179 (213)
Q Consensus 100 ~l~~~sDa~IvlpGG~GTL~Ei~~~~~~~~lg~~~kPiill~~~g~~~~l~~~l~~~~~~g~i~~~~~~~i~~~~~~ee~ 179 (213)
.++..||++| -.||.||+.|... +++|++++-. +.|. ..+.+.+.+.|.-..-... .-+++++
T Consensus 300 ~ll~~~d~~I-~hgG~~t~~eal~---------~GvP~v~~P~--~~dQ-~~~a~~~~~~G~g~~l~~~----~~~~~~l 362 (401)
T cd03784 300 WLLPRCAAVV-HHGGAGTTAAALR---------AGVPQLVVPF--FGDQ-PFWAARVAELGAGPALDPR----ELTAERL 362 (401)
T ss_pred HHhhhhheee-ecCCchhHHHHHH---------cCCCEEeeCC--CCCc-HHHHHHHHHCCCCCCCCcc----cCCHHHH
Confidence 3467789887 5677899887752 5799999843 3332 2234455555532111111 1267777
Q ss_pred HHHHHhhcC
Q 028138 180 VRQLEEYVP 188 (213)
Q Consensus 180 ~~~l~~~~~ 188 (213)
.+.+++...
T Consensus 363 ~~al~~~l~ 371 (401)
T cd03784 363 AAALRRLLD 371 (401)
T ss_pred HHHHHHHhC
Confidence 777766544
No 25
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=89.82 E-value=5.7 Score=36.10 Aligned_cols=75 Identities=20% Similarity=0.224 Sum_probs=43.5
Q ss_pred CHHHHHHHHHHhcCeEEEecCCCCcHHHHHHHHHHHHhCCCCCceEEEecCccchHHHHHHHHHHHcCCCCccccCcEEE
Q 028138 93 DMHQRKAEMARQADAFIALPGGYGTLEELLEVITWAQLGIHRKPVGLLNVDGFYNSLLSFVDKAVDEGFISPTARRIIIS 172 (213)
Q Consensus 93 ~~~~R~~~l~~~sDa~IvlpGG~GTL~Ei~~~~~~~~lg~~~kPiill~~~g~~~~l~~~l~~~~~~g~i~~~~~~~i~~ 172 (213)
++..+..-++..||++|.-|||. |+.|. +. .++|+++.+..+- +...+ ...+.+.|+ -..
T Consensus 262 G~~~~~~~~~~~aDl~I~k~gg~-tl~EA---~a------~G~PvI~~~~~pg-qe~~N-~~~~~~~G~--------g~~ 321 (391)
T PRK13608 262 GYTKHMNEWMASSQLMITKPGGI-TISEG---LA------RCIPMIFLNPAPG-QELEN-ALYFEEKGF--------GKI 321 (391)
T ss_pred eccchHHHHHHhhhEEEeCCchH-HHHHH---HH------hCCCEEECCCCCC-cchhH-HHHHHhCCc--------EEE
Confidence 34344556789999999877764 65554 43 3799999864221 11111 111223333 234
Q ss_pred cCCHHHHHHHHHhhc
Q 028138 173 APTAKKLVRQLEEYV 187 (213)
Q Consensus 173 ~~~~ee~~~~l~~~~ 187 (213)
.+|++++.+.|.+..
T Consensus 322 ~~~~~~l~~~i~~ll 336 (391)
T PRK13608 322 ADTPEEAIKIVASLT 336 (391)
T ss_pred eCCHHHHHHHHHHHh
Confidence 678888877777654
No 26
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=89.69 E-value=8.5 Score=33.88 Aligned_cols=104 Identities=17% Similarity=0.129 Sum_probs=53.6
Q ss_pred CCeEEEcCCCcChhHHHHHHHHhcCC-eEEEEeCCCCCCCCCCCCCCceeeecCCHHHHHHHHHHhcCeEEEecCCCCcH
Q 028138 40 KLDLVYGGGSVGLMGLVSQAVHDGGR-HVLGVIPKTLTPREITGDPVGEVKTVSDMHQRKAEMARQADAFIALPGGYGTL 118 (213)
Q Consensus 40 G~~lv~GGg~~GlM~a~~~ga~~~gG-~viGv~P~~~~~~e~~~~~~~~~~~~~~~~~R~~~l~~~sDa~IvlpGG~GTL 118 (213)
.+.+|++|+. | .+.+.+...+... .++-.-++.. ..... ..+.+.........-++..||++|.- ||.+|+
T Consensus 189 ~~iLv~~g~~-~-~~~l~~~l~~~~~~~~i~~~~~~~-~~~~~----~~v~~~~~~~~~~~~~l~~ad~vI~~-~G~~t~ 260 (321)
T TIGR00661 189 DYILVYIGFE-Y-RYKILELLGKIANVKFVCYSYEVA-KNSYN----ENVEIRRITTDNFKELIKNAELVITH-GGFSLI 260 (321)
T ss_pred CcEEEECCcC-C-HHHHHHHHHhCCCeEEEEeCCCCC-ccccC----CCEEEEECChHHHHHHHHhCCEEEEC-CChHHH
Confidence 6678998653 5 4555554434443 2221122211 11111 11222211113444566889988776 577887
Q ss_pred HHHHHHHHHHHhCCCCCceEEEecCccchHHHHHHHHHHHcCC
Q 028138 119 EELLEVITWAQLGIHRKPVGLLNVDGFYNSLLSFVDKAVDEGF 161 (213)
Q Consensus 119 ~Ei~~~~~~~~lg~~~kPiill~~~g~~~~l~~~l~~~~~~g~ 161 (213)
.|.. . +++|++++...+.++.... .+.+.+.|.
T Consensus 261 ~Ea~---~------~g~P~l~ip~~~~~eQ~~n-a~~l~~~g~ 293 (321)
T TIGR00661 261 SEAL---S------LGKPLIVIPDLGQFEQGNN-AVKLEDLGC 293 (321)
T ss_pred HHHH---H------cCCCEEEEcCCCcccHHHH-HHHHHHCCC
Confidence 7753 2 4799999876655554333 233555554
No 27
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=89.59 E-value=8.9 Score=34.48 Aligned_cols=70 Identities=21% Similarity=0.232 Sum_probs=40.1
Q ss_pred HHHhcCeEEEecCCCCcHHHHHHHHHHHHhCCCCCceEEEecCccchHHHHHHHHHHHcCCCCccccCcEE-EcCCHHHH
Q 028138 101 MARQADAFIALPGGYGTLEELLEVITWAQLGIHRKPVGLLNVDGFYNSLLSFVDKAVDEGFISPTARRIII-SAPTAKKL 179 (213)
Q Consensus 101 l~~~sDa~IvlpGG~GTL~Ei~~~~~~~~lg~~~kPiill~~~g~~~~l~~~l~~~~~~g~i~~~~~~~i~-~~~~~ee~ 179 (213)
++..||++ +..||.||+.|... +++|++++-.. .+.. .+.+.+.+.|.- ..+. -.-+++++
T Consensus 288 ll~~~~~~-I~hgG~~t~~Eal~---------~G~P~v~~p~~--~dq~-~~a~~l~~~g~g-----~~l~~~~~~~~~l 349 (392)
T TIGR01426 288 ILKKADAF-ITHGGMNSTMEALF---------NGVPMVAVPQG--ADQP-MTARRIAELGLG-----RHLPPEEVTAEKL 349 (392)
T ss_pred HHhhCCEE-EECCCchHHHHHHH---------hCCCEEecCCc--ccHH-HHHHHHHHCCCE-----EEeccccCCHHHH
Confidence 45778855 46888999887642 47999998432 2221 233444444421 1111 12356777
Q ss_pred HHHHHhhcC
Q 028138 180 VRQLEEYVP 188 (213)
Q Consensus 180 ~~~l~~~~~ 188 (213)
.+.|.+...
T Consensus 350 ~~ai~~~l~ 358 (392)
T TIGR01426 350 REAVLAVLS 358 (392)
T ss_pred HHHHHHHhc
Confidence 777776543
No 28
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=89.47 E-value=13 Score=32.24 Aligned_cols=77 Identities=21% Similarity=0.212 Sum_probs=40.8
Q ss_pred HHHHHHHHhcCeEEEecCCCCcHHHHHHHHHHHHhCCCCCceEEEecCcc-chHHHHHHHHHHHcCCCCccccCcEEEcC
Q 028138 96 QRKAEMARQADAFIALPGGYGTLEELLEVITWAQLGIHRKPVGLLNVDGF-YNSLLSFVDKAVDEGFISPTARRIIISAP 174 (213)
Q Consensus 96 ~R~~~l~~~sDa~IvlpGG~GTL~Ei~~~~~~~~lg~~~kPiill~~~g~-~~~l~~~l~~~~~~g~i~~~~~~~i~~~~ 174 (213)
....-++..||++|. ++|..|+.| ++. .++|++.....+. .+.-....+.+.+.|. ..+.-.+
T Consensus 244 ~~~~~~l~~ad~~v~-~sg~~t~~E---am~------~G~Pvv~~~~~~~~~~~~~~~~~~l~~~g~------g~~v~~~ 307 (350)
T cd03785 244 DDMAAAYAAADLVIS-RAGASTVAE---LAA------LGLPAILIPLPYAADDHQTANARALVKAGA------AVLIPQE 307 (350)
T ss_pred hhHHHHHHhcCEEEE-CCCHhHHHH---HHH------hCCCEEEeecCCCCCCcHHHhHHHHHhCCC------EEEEecC
Confidence 344456789999886 445556444 444 4799998754321 1110001122332221 1122222
Q ss_pred --CHHHHHHHHHhhcC
Q 028138 175 --TAKKLVRQLEEYVP 188 (213)
Q Consensus 175 --~~ee~~~~l~~~~~ 188 (213)
|++++.+.|.++..
T Consensus 308 ~~~~~~l~~~i~~ll~ 323 (350)
T cd03785 308 ELTPERLAAALLELLS 323 (350)
T ss_pred CCCHHHHHHHHHHHhc
Confidence 89999998887653
No 29
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=87.87 E-value=20 Score=32.29 Aligned_cols=73 Identities=21% Similarity=0.307 Sum_probs=40.0
Q ss_pred HHHHhcCeEEEecCCCCcHHHHHHHHHHHHhCCCCCceEEEecCcc---chHHHHHHHHHHHcCCCCccccCcEEEcCCH
Q 028138 100 EMARQADAFIALPGGYGTLEELLEVITWAQLGIHRKPVGLLNVDGF---YNSLLSFVDKAVDEGFISPTARRIIISAPTA 176 (213)
Q Consensus 100 ~l~~~sDa~IvlpGG~GTL~Ei~~~~~~~~lg~~~kPiill~~~g~---~~~l~~~l~~~~~~g~i~~~~~~~i~~~~~~ 176 (213)
.++..||++|. -||.+|+.|+.. .++|.+++-.... .+.. ...+.+.+.|....-. .-.-++
T Consensus 248 ~~~~~adlvIs-r~G~~t~~E~~~---------~g~P~I~iP~~~~~~~~~Q~-~Na~~l~~~g~~~~l~----~~~~~~ 312 (352)
T PRK12446 248 DILAITDFVIS-RAGSNAIFEFLT---------LQKPMLLIPLSKFASRGDQI-LNAESFERQGYASVLY----EEDVTV 312 (352)
T ss_pred HHHHhCCEEEE-CCChhHHHHHHH---------cCCCEEEEcCCCCCCCchHH-HHHHHHHHCCCEEEcc----hhcCCH
Confidence 46789995555 556678888753 4799999832111 1222 2234455555432110 112257
Q ss_pred HHHHHHHHhhc
Q 028138 177 KKLVRQLEEYV 187 (213)
Q Consensus 177 ee~~~~l~~~~ 187 (213)
+.+.+.+.+..
T Consensus 313 ~~l~~~l~~ll 323 (352)
T PRK12446 313 NSLIKHVEELS 323 (352)
T ss_pred HHHHHHHHHHH
Confidence 77777777654
No 30
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=86.21 E-value=6.9 Score=34.78 Aligned_cols=31 Identities=35% Similarity=0.321 Sum_probs=22.0
Q ss_pred HHHHHhcCeEEEecCCCCcHHHHHHHHHHHHhCCCCCceEEE
Q 028138 99 AEMARQADAFIALPGGYGTLEELLEVITWAQLGIHRKPVGLL 140 (213)
Q Consensus 99 ~~l~~~sDa~IvlpGG~GTL~Ei~~~~~~~~lg~~~kPiill 140 (213)
..+...||++|. ++|..|+ |. +. .++|+|+.
T Consensus 256 ~~~~~~aDl~v~-~sG~~~l-Ea---~a------~G~PvI~~ 286 (380)
T PRK00025 256 REAMAAADAALA-ASGTVTL-EL---AL------LKVPMVVG 286 (380)
T ss_pred HHHHHhCCEEEE-CccHHHH-HH---HH------hCCCEEEE
Confidence 446789998887 5677776 55 22 37999876
No 31
>PF04101 Glyco_tran_28_C: Glycosyltransferase family 28 C-terminal domain; InterPro: IPR007235 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC). Structural analysis suggests the C-terminal domain contains the UDP-GlcNAc binding site.; GO: 0016758 transferase activity, transferring hexosyl groups, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2KS6_A 2JZC_A 1NLM_B 1F0K_B.
Probab=85.30 E-value=2.2 Score=33.68 Aligned_cols=34 Identities=32% Similarity=0.469 Sum_probs=22.2
Q ss_pred HHHHHhcCeEEEecCCCCcHHHHHHHHHHHHhCCCCCceEEEec
Q 028138 99 AEMARQADAFIALPGGYGTLEELLEVITWAQLGIHRKPVGLLNV 142 (213)
Q Consensus 99 ~~l~~~sDa~IvlpGG~GTL~Ei~~~~~~~~lg~~~kPiill~~ 142 (213)
..++..|| +|+--||.||+.|+.. .++|.|++-.
T Consensus 67 ~~~m~~aD-lvIs~aG~~Ti~E~l~---------~g~P~I~ip~ 100 (167)
T PF04101_consen 67 AELMAAAD-LVISHAGAGTIAEALA---------LGKPAIVIPL 100 (167)
T ss_dssp HHHHHHHS-EEEECS-CHHHHHHHH---------CT--EEEE--
T ss_pred HHHHHHcC-EEEeCCCccHHHHHHH---------cCCCeeccCC
Confidence 34678899 6677789999988753 4799988843
No 32
>COG4671 Predicted glycosyl transferase [General function prediction only]
Probab=84.13 E-value=19 Score=33.37 Aligned_cols=144 Identities=18% Similarity=0.243 Sum_probs=75.2
Q ss_pred HHCCCeEEE-cCCCcC--hhHHHHHHHHh-cCCeEEE-EeCCCCCCCCC--------CCCCCceeeecCCHHHHHHHHHH
Q 028138 37 VERKLDLVY-GGGSVG--LMGLVSQAVHD-GGRHVLG-VIPKTLTPREI--------TGDPVGEVKTVSDMHQRKAEMAR 103 (213)
Q Consensus 37 A~~G~~lv~-GGg~~G--lM~a~~~ga~~-~gG~viG-v~P~~~~~~e~--------~~~~~~~~~~~~~~~~R~~~l~~ 103 (213)
++.-+.||+ |||..| +-+++...+.. ++-.-.+ |+.+.++|..+ +.++...++ .|..|-..++.
T Consensus 217 pE~~~Ilvs~GGG~dG~eLi~~~l~A~~~l~~l~~~~~ivtGP~MP~~~r~~l~~~A~~~p~i~I~---~f~~~~~~ll~ 293 (400)
T COG4671 217 PEGFDILVSVGGGADGAELIETALAAAQLLAGLNHKWLIVTGPFMPEAQRQKLLASAPKRPHISIF---EFRNDFESLLA 293 (400)
T ss_pred CccceEEEecCCChhhHHHHHHHHHHhhhCCCCCcceEEEeCCCCCHHHHHHHHHhcccCCCeEEE---EhhhhHHHHHH
Confidence 554555654 555445 55555555554 3333223 23344455332 112222222 24455566777
Q ss_pred hcCeEEEecCCCCcHHHHHHHHHHHHhCCCCCceEEEec-CccchHHHHHHHHHHHcCCCCccccCcEEEcCCHHHHHHH
Q 028138 104 QADAFIALPGGYGTLEELLEVITWAQLGIHRKPVGLLNV-DGFYNSLLSFVDKAVDEGFISPTARRIIISAPTAKKLVRQ 182 (213)
Q Consensus 104 ~sDa~IvlpGG~GTL~Ei~~~~~~~~lg~~~kPiill~~-~g~~~~l~~~l~~~~~~g~i~~~~~~~i~~~~~~ee~~~~ 182 (213)
.||.+|.+ ||+.|.=|| ++ .+||-+++-. .+--+.++. .+.+.+-|.++--..+.+ +++-+.++
T Consensus 294 gA~~vVSm-~GYNTvCeI---Ls------~~k~aLivPr~~p~eEQliR-A~Rl~~LGL~dvL~pe~l----t~~~La~a 358 (400)
T COG4671 294 GARLVVSM-GGYNTVCEI---LS------FGKPALIVPRAAPREEQLIR-AQRLEELGLVDVLLPENL----TPQNLADA 358 (400)
T ss_pred hhheeeec-ccchhhhHH---Hh------CCCceEEeccCCCcHHHHHH-HHHHHhcCcceeeCcccC----ChHHHHHH
Confidence 88888776 678886655 43 3688887732 222233332 134666677764444444 26777777
Q ss_pred HHhhcCCCcccccccc
Q 028138 183 LEEYVPEHDEITSKLV 198 (213)
Q Consensus 183 l~~~~~~~~~~~~~~~ 198 (213)
|+...+.+....++|+
T Consensus 359 l~~~l~~P~~~~~~L~ 374 (400)
T COG4671 359 LKAALARPSPSKPHLD 374 (400)
T ss_pred HHhcccCCCCCccccC
Confidence 7776553333444444
No 33
>PRK13660 hypothetical protein; Provisional
Probab=83.42 E-value=25 Score=29.27 Aligned_cols=108 Identities=13% Similarity=0.063 Sum_probs=57.2
Q ss_pred HHHHHHHHHCCCeE-EEcCCCcChhHHHHHHHHhcC----C-eEEEEeCCCCCCCCCCC----------CCCceee-e--
Q 028138 30 VELGKELVERKLDL-VYGGGSVGLMGLVSQAVHDGG----R-HVLGVIPKTLTPREITG----------DPVGEVK-T-- 90 (213)
Q Consensus 30 ~~lG~~lA~~G~~l-v~GGg~~GlM~a~~~ga~~~g----G-~viGv~P~~~~~~e~~~----------~~~~~~~-~-- 90 (213)
++|-+.+. .|+.- ++||. .|+---++.-|++.. . +.+-++|=......... ...+.+. +
T Consensus 33 ~~l~~~~e-~G~~wfi~gga-lG~d~wAaEvvl~LK~~yp~lkL~~~~PF~~q~~~W~e~~q~~y~~i~~~aD~v~~vs~ 110 (182)
T PRK13660 33 RKLIALLE-EGLEWVIISGQ-LGVELWAAEVVLELKEEYPDLKLAVITPFEEHGENWNEANQEKLANILKQADFVKSISK 110 (182)
T ss_pred HHHHHHHH-CCCCEEEECCc-chHHHHHHHHHHHHHhhCCCeEEEEEeCccchhhcCCHHHHHHHHHHHHhCCEEEEecC
Confidence 34444444 57765 55655 599888888888753 2 34455552211111000 0111111 1
Q ss_pred -----cCCHHHHHHHHHHhcCeEEEecCC---CCcHHHHHHHHHHHHhCCCCCceEEEe
Q 028138 91 -----VSDMHQRKAEMARQADAFIALPGG---YGTLEELLEVITWAQLGIHRKPVGLLN 141 (213)
Q Consensus 91 -----~~~~~~R~~~l~~~sDa~IvlpGG---~GTL~Ei~~~~~~~~lg~~~kPiill~ 141 (213)
..-|..|++.|+++||.+|++=-| .||--=+-.|- .+-..++.||.+++
T Consensus 111 ~~y~~p~q~~~rn~fmv~~sd~~i~~YD~e~~Ggt~y~~~~A~--k~~~~~~y~i~~I~ 167 (182)
T PRK13660 111 RPYESPAQFRQYNQFMLEHTDGALLVYDEENEGSPKYFYEAAK--KKQEKEDYPLDLIT 167 (182)
T ss_pred CCCCChHHHHHHHHHHHHccCeEEEEEcCCCCCChHHHHHHHH--HhhhccCceEEEeC
Confidence 122789999999999988886543 23432222221 11113578888874
No 34
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=82.20 E-value=20 Score=31.18 Aligned_cols=38 Identities=24% Similarity=0.120 Sum_probs=27.3
Q ss_pred HHHHHHHHHHhcCeEEEecCCCCcHHHHHHHHHHHHhCCCCCceEEEec
Q 028138 94 MHQRKAEMARQADAFIALPGGYGTLEELLEVITWAQLGIHRKPVGLLNV 142 (213)
Q Consensus 94 ~~~R~~~l~~~sDa~IvlpGG~GTL~Ei~~~~~~~~lg~~~kPiill~~ 142 (213)
+.....-++..||.+|. .|| +|+.|++. .++|++++-.
T Consensus 231 ~~~~m~~lm~~aDl~Is-~~G-~T~~E~~a---------~g~P~i~i~~ 268 (279)
T TIGR03590 231 DVENMAELMNEADLAIG-AAG-STSWERCC---------LGLPSLAICL 268 (279)
T ss_pred CHHHHHHHHHHCCEEEE-CCc-hHHHHHHH---------cCCCEEEEEe
Confidence 33455557789999999 566 89877753 3699998854
No 35
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=81.43 E-value=4.4 Score=32.55 Aligned_cols=46 Identities=15% Similarity=0.149 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHCCCeEEEcCCCcChhHHHHHHHHhcCCeEEEEe
Q 028138 25 YQEAAVELGKELVERKLDLVYGGGSVGLMGLVSQAVHDGGRHVLGVI 71 (213)
Q Consensus 25 ~~~~A~~lG~~lA~~G~~lv~GGg~~GlM~a~~~ga~~~gG~viGv~ 71 (213)
+-.-|+-+.++|+..|+.++++|.. =-.+.+++.|.+....+|||.
T Consensus 25 Hd~gakvia~~l~d~GfeVi~~g~~-~tp~e~v~aA~~~dv~vIgvS 70 (143)
T COG2185 25 HDRGAKVIARALADAGFEVINLGLF-QTPEEAVRAAVEEDVDVIGVS 70 (143)
T ss_pred cccchHHHHHHHHhCCceEEecCCc-CCHHHHHHHHHhcCCCEEEEE
Confidence 3345778899999999999999986 667888888999999999993
No 36
>COG1597 LCB5 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]
Probab=79.70 E-value=3.7 Score=36.56 Aligned_cols=46 Identities=24% Similarity=0.452 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHCCCeE-EEcCCCcChhHHHHHHHHhcCCeEEEEeCCC
Q 028138 28 AAVELGKELVERKLDL-VYGGGSVGLMGLVSQAVHDGGRHVLGVIPKT 74 (213)
Q Consensus 28 ~A~~lG~~lA~~G~~l-v~GGg~~GlM~a~~~ga~~~gG~viGv~P~~ 74 (213)
.|.++.+.++..++.. |.+||. |...+++.|..+.+...+||+|.-
T Consensus 46 ~a~~~a~~a~~~~~D~via~GGD-GTv~evingl~~~~~~~LgilP~G 92 (301)
T COG1597 46 DAIEIAREAAVEGYDTVIAAGGD-GTVNEVANGLAGTDDPPLGILPGG 92 (301)
T ss_pred cHHHHHHHHHhcCCCEEEEecCc-chHHHHHHHHhcCCCCceEEecCC
Confidence 4667777777777765 566665 999999999999888879999963
No 37
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=77.07 E-value=58 Score=29.63 Aligned_cols=76 Identities=17% Similarity=0.124 Sum_probs=40.7
Q ss_pred HHHhcCeEEEecCCCCcHHHHHHHHHHHHhCCCCCceEEEecCccchHHHHHHHHHHHcCCC-------Ccc-ccCcEEE
Q 028138 101 MARQADAFIALPGGYGTLEELLEVITWAQLGIHRKPVGLLNVDGFYNSLLSFVDKAVDEGFI-------SPT-ARRIIIS 172 (213)
Q Consensus 101 l~~~sDa~IvlpGG~GTL~Ei~~~~~~~~lg~~~kPiill~~~g~~~~l~~~l~~~~~~g~i-------~~~-~~~~i~~ 172 (213)
.+..||++|.-. |..|+ |++. .++|+|+...-..+..+.. ++++.-.++ ++. ..+++.-
T Consensus 264 ~l~aADl~V~~S-Gt~tl-Ea~a---------~G~P~Vv~yk~~pl~~~~~--~~~~~~~~~~~~nil~~~~~~pel~q~ 330 (385)
T TIGR00215 264 AMFAADAALLAS-GTAAL-EAAL---------IKTPMVVGYRMKPLTFLIA--RRLVKTDYISLPNILANRLLVPELLQE 330 (385)
T ss_pred HHHhCCEEeecC-CHHHH-HHHH---------cCCCEEEEEcCCHHHHHHH--HHHHcCCeeeccHHhcCCccchhhcCC
Confidence 568899887766 55676 6542 4799888743222222111 112211121 111 1233444
Q ss_pred cCCHHHHHHHHHhhcCC
Q 028138 173 APTAKKLVRQLEEYVPE 189 (213)
Q Consensus 173 ~~~~ee~~~~l~~~~~~ 189 (213)
.-+++.+.+.+.++...
T Consensus 331 ~~~~~~l~~~~~~ll~~ 347 (385)
T TIGR00215 331 ECTPHPLAIALLLLLEN 347 (385)
T ss_pred CCCHHHHHHHHHHHhcC
Confidence 55788888888877543
No 38
>COG3613 Nucleoside 2-deoxyribosyltransferase [Nucleotide transport and metabolism]
Probab=76.73 E-value=23 Score=29.33 Aligned_cols=52 Identities=27% Similarity=0.239 Sum_probs=37.1
Q ss_pred HHHHHHHHhcCeEEEecCC------CCcHHHHHHHHHHHHhCCCCCceEEEecCc--cchHHHHHH
Q 028138 96 QRKAEMARQADAFIALPGG------YGTLEELLEVITWAQLGIHRKPVGLLNVDG--FYNSLLSFV 153 (213)
Q Consensus 96 ~R~~~l~~~sDa~IvlpGG------~GTL~Ei~~~~~~~~lg~~~kPiill~~~g--~~~~l~~~l 153 (213)
+=...+++.||++|+.-=+ .||.-|+-.+..+ +||++.+..+. +..++...+
T Consensus 60 e~d~~~i~~aD~vla~ld~fr~~~DsGTa~E~GYa~Al------gKPv~~~~~d~~~~~~r~~~~~ 119 (172)
T COG3613 60 EADIKLIDQADIVLANLDPFRPDPDSGTAFELGYAIAL------GKPVYAYRKDAANYASRLNAHL 119 (172)
T ss_pred HHHHHHHhhcCEEEEecCCCCCCCCCcchHHHHHHHHc------CCceEEEeecccchhhHHHHhH
Confidence 3344567999999988765 6999999988863 69999996542 344444444
No 39
>TIGR00196 yjeF_cterm yjeF C-terminal region, hydroxyethylthiazole kinase-related. The present model may hit hydroxyethylthiazole kinase, an enzyme associated with thiamine biosynthesis.
Probab=74.96 E-value=19 Score=31.07 Aligned_cols=42 Identities=21% Similarity=0.301 Sum_probs=23.5
Q ss_pred HHHHHhcCeEEEecCCCCcHHHHHHHHHHHHhCCCCCceEEEecCc
Q 028138 99 AEMARQADAFIALPGGYGTLEELLEVITWAQLGIHRKPVGLLNVDG 144 (213)
Q Consensus 99 ~~l~~~sDa~IvlpGG~GTL~Ei~~~~~~~~lg~~~kPiill~~~g 144 (213)
..+...+|++++ .+|.++-+.+.++... +..+++|+ +++.+|
T Consensus 87 ~~~~~~~davvi-g~Gl~~~~~~~~l~~~--~~~~~~pv-VlDa~g 128 (272)
T TIGR00196 87 EELLERYDVVVI-GPGLGQDPSFKKAVEE--VLELDKPV-VLDADA 128 (272)
T ss_pred HhhhccCCEEEE-cCCCCCCHHHHHHHHH--HHhcCCCE-EEEhHH
Confidence 334566776666 6668886654433322 22346785 456654
No 40
>PF13607 Succ_CoA_lig: Succinyl-CoA ligase like flavodoxin domain; PDB: 2CSU_A.
Probab=68.77 E-value=24 Score=27.83 Aligned_cols=115 Identities=17% Similarity=0.232 Sum_probs=56.7
Q ss_pred CCeEEEcCCCcChhHHHHHHHHhcCCeEEEEeCCCCCCCCCCCCCCceeeecCCHHHHHHHHHH--hcCeEEEecCCCCc
Q 028138 40 KLDLVYGGGSVGLMGLVSQAVHDGGRHVLGVIPKTLTPREITGDPVGEVKTVSDMHQRKAEMAR--QADAFIALPGGYGT 117 (213)
Q Consensus 40 G~~lv~GGg~~GlM~a~~~ga~~~gG~viGv~P~~~~~~e~~~~~~~~~~~~~~~~~R~~~l~~--~sDa~IvlpGG~GT 117 (213)
++.+|+=.| ++..++.+.+.+.| +|+. .... ..|.. + -++.+=.+.+.+ ..+++++.--|++-
T Consensus 3 ~valisQSG--~~~~~~~~~~~~~g---~g~s--~~vs---~Gn~~-d----v~~~d~l~~~~~D~~t~~I~ly~E~~~d 67 (138)
T PF13607_consen 3 GVALISQSG--ALGTAILDWAQDRG---IGFS--YVVS---VGNEA-D----VDFADLLEYLAEDPDTRVIVLYLEGIGD 67 (138)
T ss_dssp SEEEEES-H--HHHHHHHHHHHHTT----EES--EEEE----TT-S-S----S-HHHHHHHHCT-SS--EEEEEES--S-
T ss_pred CEEEEECCH--HHHHHHHHHHHHcC---CCee--EEEE---eCccc-c----CCHHHHHHHHhcCCCCCEEEEEccCCCC
Confidence 345565433 57777778788776 2331 0000 01111 1 123222333333 35688888888999
Q ss_pred HHHHHHHHHHHHhCCCCCceEEEecCc-----------------cchHHHHHHHHHHHcCCCCccccCcEEEcCCHHHHH
Q 028138 118 LEELLEVITWAQLGIHRKPVGLLNVDG-----------------FYNSLLSFVDKAVDEGFISPTARRIIISAPTAKKLV 180 (213)
Q Consensus 118 L~Ei~~~~~~~~lg~~~kPiill~~~g-----------------~~~~l~~~l~~~~~~g~i~~~~~~~i~~~~~~ee~~ 180 (213)
-.+++++.. ..... ||||++..+. -++-+... +...| +..++|++|++
T Consensus 68 ~~~f~~~~~--~a~~~-KPVv~lk~Grt~~g~~aa~sHTgslag~~~~~~a~---~~~aG---------v~~v~~~~el~ 132 (138)
T PF13607_consen 68 GRRFLEAAR--RAARR-KPVVVLKAGRTEAGARAAASHTGSLAGDDAVYDAA---LRQAG---------VVRVDDLDELL 132 (138)
T ss_dssp HHHHHHHHH--HHCCC-S-EEEEE---------------------HHHHHHH---HHHCT---------EEEESSHHHHH
T ss_pred HHHHHHHHH--HHhcC-CCEEEEeCCCchhhhhhhhccCCcccCcHHHHHHH---HHHcC---------ceEECCHHHHH
Confidence 899888775 33333 9999997642 11112222 22223 67899999999
Q ss_pred HHHH
Q 028138 181 RQLE 184 (213)
Q Consensus 181 ~~l~ 184 (213)
+..+
T Consensus 133 ~~~~ 136 (138)
T PF13607_consen 133 DAAK 136 (138)
T ss_dssp HHHC
T ss_pred HHHH
Confidence 8654
No 41
>PRK00696 sucC succinyl-CoA synthetase subunit beta; Provisional
Probab=67.15 E-value=1e+02 Score=28.15 Aligned_cols=71 Identities=20% Similarity=0.140 Sum_probs=41.5
Q ss_pred cCeEE-EecCCCCcHHHHHHHHHHHHhC-CCCCceEEEecCc-cchHHHHHHHHHHHcCCCCccccCcEEEcCCHHHHHH
Q 028138 105 ADAFI-ALPGGYGTLEELLEVITWAQLG-IHRKPVGLLNVDG-FYNSLLSFVDKAVDEGFISPTARRIIISAPTAKKLVR 181 (213)
Q Consensus 105 sDa~I-vlpGG~GTL~Ei~~~~~~~~lg-~~~kPiill~~~g-~~~~l~~~l~~~~~~g~i~~~~~~~i~~~~~~ee~~~ 181 (213)
.|+++ .++|++...+++.+.+.-..-. ..+|||++.. .| ..+...+. +.+.|+ .+.+++++++++.
T Consensus 311 vd~vlv~~~~~~~~~~~va~~i~~~~~~~~~~kPvv~~~-~g~~~~~~~~~---L~~~Gi-------~ip~f~~pe~A~~ 379 (388)
T PRK00696 311 VKAILVNIFGGITRCDVIAEGIIAAVKEVGVTVPLVVRL-EGTNVELGKKI---LAESGL-------NIIAADTLDDAAQ 379 (388)
T ss_pred CCEEEEEeCCCCCCHHHHHHHHHHHHHhcCCCCcEEEEe-CCCCHHHHHHH---HHHCCC-------CceecCCHHHHHH
Confidence 46654 4567777777777766532211 1579995543 34 22233222 333331 1568999999999
Q ss_pred HHHhh
Q 028138 182 QLEEY 186 (213)
Q Consensus 182 ~l~~~ 186 (213)
.+.+.
T Consensus 380 al~~~ 384 (388)
T PRK00696 380 KAVEA 384 (388)
T ss_pred HHHHH
Confidence 98865
No 42
>PRK13337 putative lipid kinase; Reviewed
Probab=66.47 E-value=15 Score=32.24 Aligned_cols=44 Identities=32% Similarity=0.508 Sum_probs=29.9
Q ss_pred HHHHHHHHHHCCC-eEEEcCCCcChhHHHHHHHHhcC-CeEEEEeCC
Q 028138 29 AVELGKELVERKL-DLVYGGGSVGLMGLVSQAVHDGG-RHVLGVIPK 73 (213)
Q Consensus 29 A~~lG~~lA~~G~-~lv~GGg~~GlM~a~~~ga~~~g-G~viGv~P~ 73 (213)
|.++.+.++++++ .||..||. |...++..|....+ ...+||+|.
T Consensus 46 a~~~a~~~~~~~~d~vvv~GGD-GTl~~vv~gl~~~~~~~~lgiiP~ 91 (304)
T PRK13337 46 ATLAAERAVERKFDLVIAAGGD-GTLNEVVNGIAEKENRPKLGIIPV 91 (304)
T ss_pred HHHHHHHHHhcCCCEEEEEcCC-CHHHHHHHHHhhCCCCCcEEEECC
Confidence 3445555566654 34556675 99999999887654 347999995
No 43
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=66.34 E-value=91 Score=27.31 Aligned_cols=80 Identities=23% Similarity=0.221 Sum_probs=44.0
Q ss_pred CCHHHHHHHHHHhcCeEEEecCCCCcHHHHHHHHHHHHhCCCCCceEEEecCc--cchHHHHHHHHHHHcCCCCccccCc
Q 028138 92 SDMHQRKAEMARQADAFIALPGGYGTLEELLEVITWAQLGIHRKPVGLLNVDG--FYNSLLSFVDKAVDEGFISPTARRI 169 (213)
Q Consensus 92 ~~~~~R~~~l~~~sDa~IvlpGG~GTL~Ei~~~~~~~~lg~~~kPiill~~~g--~~~~l~~~l~~~~~~g~i~~~~~~~ 169 (213)
.++...-.-++..||++|. .+|.+|+-|. +. .++|++.....+ ..+... ..+.+.+.|. ..
T Consensus 240 ~g~~~~~~~~~~~~d~~i~-~~g~~~~~Ea---~~------~g~Pvv~~~~~~~~~~~~~~-~~~~i~~~~~------g~ 302 (357)
T PRK00726 240 VPFIDDMAAAYAAADLVIC-RAGASTVAEL---AA------AGLPAILVPLPHAADDHQTA-NARALVDAGA------AL 302 (357)
T ss_pred eehHhhHHHHHHhCCEEEE-CCCHHHHHHH---HH------hCCCEEEecCCCCCcCcHHH-HHHHHHHCCC------EE
Confidence 3443334456789999986 5555665554 43 479999886432 111111 1122333331 22
Q ss_pred EEEcCC--HHHHHHHHHhhcC
Q 028138 170 IISAPT--AKKLVRQLEEYVP 188 (213)
Q Consensus 170 i~~~~~--~ee~~~~l~~~~~ 188 (213)
+.-.+| ++++.+.|.+...
T Consensus 303 ~~~~~~~~~~~l~~~i~~ll~ 323 (357)
T PRK00726 303 LIPQSDLTPEKLAEKLLELLS 323 (357)
T ss_pred EEEcccCCHHHHHHHHHHHHc
Confidence 333344 8999888887654
No 44
>COG1832 Predicted CoA-binding protein [General function prediction only]
Probab=64.16 E-value=13 Score=29.76 Aligned_cols=35 Identities=20% Similarity=0.302 Sum_probs=26.3
Q ss_pred cCCceEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCeEEE
Q 028138 6 SRFKRICVFCGSSSGKKATYQEAAVELGKELVERKLDLVY 45 (213)
Q Consensus 6 ~~~~~I~V~ggs~~~~~~~~~~~A~~lG~~lA~~G~~lv~ 45 (213)
++-++|+|+|-|.....+.| .+.+.|-++||.++=
T Consensus 14 ~~~K~IAvVG~S~~P~r~sy-----~V~kyL~~~GY~ViP 48 (140)
T COG1832 14 KSAKTIAVVGASDKPDRPSY-----RVAKYLQQKGYRVIP 48 (140)
T ss_pred HhCceEEEEecCCCCCccHH-----HHHHHHHHCCCEEEe
Confidence 34578999988876555555 577888999999863
No 45
>PRK08105 flavodoxin; Provisional
Probab=64.13 E-value=9.3 Score=30.29 Aligned_cols=34 Identities=18% Similarity=0.305 Sum_probs=26.2
Q ss_pred CceEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCeEE
Q 028138 8 FKRICVFCGSSSGKKATYQEAAVELGKELVERKLDLV 44 (213)
Q Consensus 8 ~~~I~V~ggs~~~~~~~~~~~A~~lG~~lA~~G~~lv 44 (213)
|.+|.|+.+|..++... .|++|++.+.+.|+.+.
T Consensus 1 m~~i~I~YgS~tGnte~---~A~~l~~~l~~~g~~~~ 34 (149)
T PRK08105 1 MAKVGIFVGTVYGNALL---VAEEAEAILTAQGHEVT 34 (149)
T ss_pred CCeEEEEEEcCchHHHH---HHHHHHHHHHhCCCceE
Confidence 45789999998874443 57899999988888764
No 46
>COG1057 NadD Nicotinic acid mononucleotide adenylyltransferase [Coenzyme metabolism]
Probab=64.03 E-value=10 Score=31.86 Aligned_cols=34 Identities=26% Similarity=0.171 Sum_probs=27.2
Q ss_pred CCceEEEEcCCCCCCCHHHHHHHHHHHHHHHHCC
Q 028138 7 RFKRICVFCGSSSGKKATYQEAAVELGKELVERK 40 (213)
Q Consensus 7 ~~~~I~V~ggs~~~~~~~~~~~A~~lG~~lA~~G 40 (213)
++++|+|||||=.....-+...|+++.+.+...-
T Consensus 1 ~~~~i~lfGGsFdP~H~GHl~ia~~~~~~l~ld~ 34 (197)
T COG1057 1 KMKKIALFGGSFDPPHYGHLLIAEEALDQLGLDK 34 (197)
T ss_pred CCceEEEeccCCCCCCHHHHHHHHHHHHhcCCCe
Confidence 4679999999988778888888888877776544
No 47
>PRK13055 putative lipid kinase; Reviewed
Probab=64.02 E-value=16 Score=32.68 Aligned_cols=44 Identities=23% Similarity=0.339 Sum_probs=29.6
Q ss_pred HHHHHHHHHHCCC-eEEEcCCCcChhHHHHHHHHhcC-CeEEEEeCC
Q 028138 29 AVELGKELVERKL-DLVYGGGSVGLMGLVSQAVHDGG-RHVLGVIPK 73 (213)
Q Consensus 29 A~~lG~~lA~~G~-~lv~GGg~~GlM~a~~~ga~~~g-G~viGv~P~ 73 (213)
|.++.+..++.++ .||..||. |.+.++..|....+ ...+||+|.
T Consensus 48 a~~~~~~~~~~~~d~vvv~GGD-GTl~evvngl~~~~~~~~LgiiP~ 93 (334)
T PRK13055 48 AKNEAKRAAEAGFDLIIAAGGD-GTINEVVNGIAPLEKRPKMAIIPA 93 (334)
T ss_pred HHHHHHHHhhcCCCEEEEECCC-CHHHHHHHHHhhcCCCCcEEEECC
Confidence 3445555555554 34456675 99999999988654 356999995
No 48
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=63.27 E-value=1.2e+02 Score=27.53 Aligned_cols=82 Identities=16% Similarity=0.080 Sum_probs=46.1
Q ss_pred eeeecCCHHHHHHHHHHhcCeEEEec---CCCCcHHHHHHHHHHHHhCCCCCceEEEecCccchHHHHHHHHHHHcCCCC
Q 028138 87 EVKTVSDMHQRKAEMARQADAFIALP---GGYGTLEELLEVITWAQLGIHRKPVGLLNVDGFYNSLLSFVDKAVDEGFIS 163 (213)
Q Consensus 87 ~~~~~~~~~~R~~~l~~~sDa~Ivlp---GG~GTL~Ei~~~~~~~~lg~~~kPiill~~~g~~~~l~~~l~~~~~~g~i~ 163 (213)
++++.+++. ....+...||.+++.+ .+.|.- +.|++. .++|||.-...+-+..+. +.+.+.|+
T Consensus 303 ~v~l~~~~~-el~~~y~~aDi~~v~~S~~e~~g~~--~lEAma------~G~PVI~g~~~~~~~e~~---~~~~~~g~-- 368 (425)
T PRK05749 303 DVLLGDTMG-ELGLLYAIADIAFVGGSLVKRGGHN--PLEPAA------FGVPVISGPHTFNFKEIF---ERLLQAGA-- 368 (425)
T ss_pred cEEEEecHH-HHHHHHHhCCEEEECCCcCCCCCCC--HHHHHH------hCCCEEECCCccCHHHHH---HHHHHCCC--
Confidence 344444443 3445668999877642 123332 566665 479998743212223332 33333343
Q ss_pred ccccCcEEEcCCHHHHHHHHHhhcC
Q 028138 164 PTARRIIISAPTAKKLVRQLEEYVP 188 (213)
Q Consensus 164 ~~~~~~i~~~~~~ee~~~~l~~~~~ 188 (213)
+...+|++++.+.|.+...
T Consensus 369 ------~~~~~d~~~La~~l~~ll~ 387 (425)
T PRK05749 369 ------AIQVEDAEDLAKAVTYLLT 387 (425)
T ss_pred ------eEEECCHHHHHHHHHHHhc
Confidence 4457889999888887654
No 49
>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=61.93 E-value=13 Score=33.12 Aligned_cols=107 Identities=24% Similarity=0.332 Sum_probs=62.5
Q ss_pred CCceEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEcCCCcChhHHHHHHHHhcCCeEEEEeCCCCCCCCCCCCCCc
Q 028138 7 RFKRICVFCGSSSGKKATYQEAAVELGKELVERKLDLVYGGGSVGLMGLVSQAVHDGGRHVLGVIPKTLTPREITGDPVG 86 (213)
Q Consensus 7 ~~~~I~V~ggs~~~~~~~~~~~A~~lG~~lA~~G~~lv~GGg~~GlM~a~~~ga~~~gG~viGv~P~~~~~~e~~~~~~~ 86 (213)
++++|.++.- ++ .+.-.+.+.++-+.|.+.|+.+..---. . ... +. + .
T Consensus 2 ~~kkv~lI~n--~~-~~~~~~~~~~i~~~L~~~g~~v~v~~~~-~---------~~~-----~~--------~----~-- 49 (305)
T PRK02645 2 QLKQVIIAYK--AG-SSQAKEAAERCAKQLEARGCKVLMGPSG-P---------KDN-----PY--------P----V-- 49 (305)
T ss_pred CcCEEEEEEe--CC-CHHHHHHHHHHHHHHHHCCCEEEEecCc-h---------hhc-----cc--------c----c--
Confidence 4667888833 23 4555567888888898899887643211 0 000 00 0 0
Q ss_pred eeeecCCHHHHHHHHHHhcCeEEEecCCCCcHHHHHHHHHHHHhCCCCCceEEEec-C--ccchHH------HHHHHHHH
Q 028138 87 EVKTVSDMHQRKAEMARQADAFIALPGGYGTLEELLEVITWAQLGIHRKPVGLLNV-D--GFYNSL------LSFVDKAV 157 (213)
Q Consensus 87 ~~~~~~~~~~R~~~l~~~sDa~IvlpGG~GTL~Ei~~~~~~~~lg~~~kPiill~~-~--g~~~~l------~~~l~~~~ 157 (213)
+ .....+..|.+|++ ||=||+.++...+. ..++|++.+|. + ||.... .+.++++.
T Consensus 50 -------~---~~~~~~~~d~vi~~-GGDGT~l~~~~~~~-----~~~~pv~gin~~G~lGFL~~~~~~~~~~~~l~~i~ 113 (305)
T PRK02645 50 -------F---LASASELIDLAIVL-GGDGTVLAAARHLA-----PHDIPILSVNVGGHLGFLTHPRDLLQDESVWDRLQ 113 (305)
T ss_pred -------h---hhccccCcCEEEEE-CCcHHHHHHHHHhc-----cCCCCEEEEecCCcceEecCchhhcchHHHHHHHH
Confidence 0 01111346766666 99999998876653 24799999986 2 566543 34556655
Q ss_pred HcCC
Q 028138 158 DEGF 161 (213)
Q Consensus 158 ~~g~ 161 (213)
+..|
T Consensus 114 ~g~~ 117 (305)
T PRK02645 114 EDRY 117 (305)
T ss_pred cCCc
Confidence 5443
No 50
>PF00781 DAGK_cat: Diacylglycerol kinase catalytic domain; InterPro: IPR001206 The DAG-kinase catalytic domain or DAGKc domain is present in mammalian lipid kinases, such as diacylglycerol (DAG), ceramide and sphingosine kinases, as well as in related bacterial proteins [, ]. Eukaryotic DAG-kinase (2.7.1.107 from EC) catalyses the phosphorylation of DAG to phosphatidic acid, thus modulating the balance between the two signaling lipids. At least ten different isoforms have been identified in mammals, which form 5 groups characterised by different functional domains, such as the calcium-binding EF hand (see PDOC00018 from PROSITEDOC), PH (see PDOC50003 from PROSITEDOC), SAM (see PDOC50105 from PROSITEDOC) , DAG/PE-binding C1 domain (see PDOC00379 from PROSITEDOC) and ankyrin repeats (see PDOC50088 from PROSITEDOC) []. In bacteria, an integral membrane DAG kinase forms a homotrimeric protein that lacks the DAGKc domain (see PDOC00820 from PROSITEDOC). In contrast, the bacterial yegS protein is a soluble cytosolic protein that contains the DAGKc domain in the N-terminal part. YegS is a lipid kinase with two structural domains, wherein the active site is located in the interdomain cleft, C-terminal to the DAGKc domain which forms an alpha/beta fold []. The tertiary structure resembles that of NAD kinases and contains a metal-binding site in the C-terminal region [, ]. This domain is usually associated with an accessory domain (see IPR000756 from INTERPRO).; GO: 0004143 diacylglycerol kinase activity, 0007205 activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway; PDB: 2JGR_A 2BON_A 3T5P_D 3S40_A 2P1R_A 2QV7_A 2QVL_A.
Probab=61.47 E-value=12 Score=28.48 Aligned_cols=43 Identities=28% Similarity=0.418 Sum_probs=28.1
Q ss_pred HHHHHHHHHCCC--eEEEcCCCcChhHHHHHHHHhcCC---eEEEEeCC
Q 028138 30 VELGKELVERKL--DLVYGGGSVGLMGLVSQAVHDGGR---HVLGVIPK 73 (213)
Q Consensus 30 ~~lG~~lA~~G~--~lv~GGg~~GlM~a~~~ga~~~gG---~viGv~P~ 73 (213)
.++.+....... .||..||. |..-.+..+...... ..+|++|.
T Consensus 43 ~~~~~~~~~~~~~~~ivv~GGD-GTl~~vv~~l~~~~~~~~~~l~iiP~ 90 (130)
T PF00781_consen 43 EALARILALDDYPDVIVVVGGD-GTLNEVVNGLMGSDREDKPPLGIIPA 90 (130)
T ss_dssp HHHHHHHHHTTS-SEEEEEESH-HHHHHHHHHHCTSTSSS--EEEEEE-
T ss_pred HHHHHHHhhccCccEEEEEcCc-cHHHHHHHHHhhcCCCccceEEEecC
Confidence 344443444444 66666775 988888888887765 47999985
No 51
>PRK09004 FMN-binding protein MioC; Provisional
Probab=60.93 E-value=10 Score=29.96 Aligned_cols=34 Identities=24% Similarity=0.285 Sum_probs=25.7
Q ss_pred CceEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCeEE
Q 028138 8 FKRICVFCGSSSGKKATYQEAAVELGKELVERKLDLV 44 (213)
Q Consensus 8 ~~~I~V~ggs~~~~~~~~~~~A~~lG~~lA~~G~~lv 44 (213)
|.+|.|+.+|..++.+. .|++|.+.+.+.|+.+.
T Consensus 1 M~~i~I~ygS~tGnae~---~A~~l~~~~~~~g~~~~ 34 (146)
T PRK09004 1 MADITLISGSTLGGAEY---VADHLAEKLEEAGFSTE 34 (146)
T ss_pred CCeEEEEEEcCchHHHH---HHHHHHHHHHHcCCceE
Confidence 45789999998874444 57888888888887654
No 52
>KOG4022 consensus Dihydropteridine reductase DHPR/QDPR [Amino acid transport and metabolism]
Probab=60.34 E-value=57 Score=27.34 Aligned_cols=70 Identities=19% Similarity=0.338 Sum_probs=43.9
Q ss_pred CCCeEEEcCCCcChhHHHHHHHHhcCCeEEEEeCCCCCCCCCCCCCCceeee--cCCHHHHHHHHH---------HhcCe
Q 028138 39 RKLDLVYGGGSVGLMGLVSQAVHDGGRHVLGVIPKTLTPREITGDPVGEVKT--VSDMHQRKAEMA---------RQADA 107 (213)
Q Consensus 39 ~G~~lv~GGg~~GlM~a~~~ga~~~gG~viGv~P~~~~~~e~~~~~~~~~~~--~~~~~~R~~~l~---------~~sDa 107 (213)
.|-.||||| . |..+.++-.++++++..++-+ .+...|.... .+++ ...+-+..+... +.-|+
T Consensus 3 agrVivYGG-k-GALGSacv~~FkannywV~si--Dl~eNe~Ad~---sI~V~~~~swtEQe~~v~~~vg~sL~gekvDa 75 (236)
T KOG4022|consen 3 AGRVIVYGG-K-GALGSACVEFFKANNYWVLSI--DLSENEQADS---SILVDGNKSWTEQEQSVLEQVGSSLQGEKVDA 75 (236)
T ss_pred CceEEEEcC-c-chHhHHHHHHHHhcCeEEEEE--eecccccccc---eEEecCCcchhHHHHHHHHHHHHhhcccccce
Confidence 577899986 5 999999999999998776653 1222222211 1222 345544444433 24699
Q ss_pred EEEecCCC
Q 028138 108 FIALPGGY 115 (213)
Q Consensus 108 ~IvlpGG~ 115 (213)
++.+.||+
T Consensus 76 v~CVAGGW 83 (236)
T KOG4022|consen 76 VFCVAGGW 83 (236)
T ss_pred EEEeeccc
Confidence 99999885
No 53
>cd06259 YdcF-like YdcF-like. YdcF-like is a large family of mainly bacterial proteins, with a few members found in fungi, plants, and archaea. Escherichia coli YdcF has been shown to bind S-adenosyl-L-methionine (AdoMet), but a biochemical function has not been idenitified. The family also includes Escherichia coli sanA and Salmonella typhimurium sfiX, which are involved in vancomycin resistance; sfiX may also be involved in murein synthesis.
Probab=59.13 E-value=46 Score=25.61 Aligned_cols=15 Identities=20% Similarity=0.330 Sum_probs=7.7
Q ss_pred CcEEEcCCHHHHHHH
Q 028138 168 RIIISAPTAKKLVRQ 182 (213)
Q Consensus 168 ~~i~~~~~~ee~~~~ 182 (213)
..+.++.|+--+-..
T Consensus 96 ~~i~lVTs~~H~~Ra 110 (150)
T cd06259 96 RSVLLVTSAYHMPRA 110 (150)
T ss_pred CeEEEECCHHHHHHH
Confidence 345556665554443
No 54
>cd00411 Asparaginase Asparaginase (amidohydrolase): Asparaginases are tetrameric enzymes that catalyze the hydrolysis of asparagine to aspartic acid and ammonia. In bacteria, there are two classes of amidohydrolases, one highly specific for asparagine and localised to the periplasm, and a second (asparaginase- glutaminase) present in the cytosol that hydrolyzises both asparagine and glutamine with similar specificities.
Probab=58.08 E-value=27 Score=31.40 Aligned_cols=36 Identities=28% Similarity=0.353 Sum_probs=28.3
Q ss_pred hcCeEEEecCCCCcHHHHHHHHHHHHhCCCCCceEEEec
Q 028138 104 QADAFIALPGGYGTLEELLEVITWAQLGIHRKPVGLLNV 142 (213)
Q Consensus 104 ~sDa~IvlpGG~GTL~Ei~~~~~~~~lg~~~kPiill~~ 142 (213)
..|+|||..| .-||+|...++.+.- . .+||||+-+.
T Consensus 78 ~~dGiVVtHG-TDTmeeTA~~L~~~l-~-~~kPVVlTGA 113 (323)
T cd00411 78 SYDGFVITHG-TDTMEETAYFLSLTL-E-NDKPVVLTGS 113 (323)
T ss_pred hcCcEEEEcC-cccHHHHHHHHHHHh-c-CCCCEEEECC
Confidence 4799999875 899999999887643 2 3899999753
No 55
>smart00046 DAGKc Diacylglycerol kinase catalytic domain (presumed). Diacylglycerol (DAG) is a second messenger that acts as a protein kinase C activator. DAG can be produced from the hydrolysis of phosphatidylinositol 4,5-bisphosphate (PIP2) by a phosphoinositide-specific phospholipase C and by the degradation of phosphatidylcholine (PC) by a phospholipase C or the concerted actions of phospholipase D and phosphatidate phosphohydrolase. This domain is presumed to be the catalytic domain. Bacterial homologues areknown.
Probab=57.41 E-value=13 Score=28.33 Aligned_cols=31 Identities=26% Similarity=0.414 Sum_probs=21.8
Q ss_pred EEEecCCCCcHHHHHHHHHHHHhCC-CC-CceEEE
Q 028138 108 FIALPGGYGTLEELLEVITWAQLGI-HR-KPVGLL 140 (213)
Q Consensus 108 ~IvlpGG~GTL~Ei~~~~~~~~lg~-~~-kPiill 140 (213)
.|+.-||=||++|+...+. +... .+ .|+.++
T Consensus 52 ~vvv~GGDGTi~~vvn~l~--~~~~~~~~~plgii 84 (124)
T smart00046 52 RVLVCGGDGTVGWVLNALD--KRELPLPEPPVAVL 84 (124)
T ss_pred EEEEEccccHHHHHHHHHH--hcccccCCCcEEEe
Confidence 7778999999999987763 2221 11 577777
No 56
>PRK11914 diacylglycerol kinase; Reviewed
Probab=57.27 E-value=1.2e+02 Score=26.50 Aligned_cols=18 Identities=28% Similarity=0.597 Sum_probs=10.2
Q ss_pred EEEecCCCCcHHHHHHHH
Q 028138 108 FIALPGGYGTLEELLEVI 125 (213)
Q Consensus 108 ~IvlpGG~GTL~Ei~~~~ 125 (213)
.|+.-||=||++|+...+
T Consensus 67 ~vvv~GGDGTi~evv~~l 84 (306)
T PRK11914 67 ALVVVGGDGVISNALQVL 84 (306)
T ss_pred EEEEECCchHHHHHhHHh
Confidence 344556666666665444
No 57
>TIGR00060 L18_bact ribosomal protein L18, bacterial type. The archaeal and eukaryotic type rpL18 is not detectable under this model.
Probab=56.95 E-value=29 Score=26.74 Aligned_cols=40 Identities=28% Similarity=0.444 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHH----CCCeEE---EcCCC-cChhHHHHHHHHhcCC
Q 028138 26 QEAAVELGKELVE----RKLDLV---YGGGS-VGLMGLVSQAVHDGGR 65 (213)
Q Consensus 26 ~~~A~~lG~~lA~----~G~~lv---~GGg~-~GlM~a~~~ga~~~gG 65 (213)
.+.|+.+|+.||+ .|+.-| -||.. -|-+.|+++|+.++|-
T Consensus 65 ~~aA~~vG~~la~ra~~~gi~~vvfDrgg~~YhGrv~A~a~~aRe~Gl 112 (114)
T TIGR00060 65 KDAAKKVGKLVAERLKEKGIKDVVFDRGGYKYHGRVAALAEAAREAGL 112 (114)
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEeCCCCcchHHHHHHHHHHHHhCC
Confidence 5678888888887 464433 23322 5799999999999873
No 58
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=56.54 E-value=67 Score=28.47 Aligned_cols=62 Identities=24% Similarity=0.328 Sum_probs=37.6
Q ss_pred ccCCceEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCe------------------------------EEEcCCCcChhH
Q 028138 5 KSRFKRICVFCGSSSGKKATYQEAAVELGKELVERKLD------------------------------LVYGGGSVGLMG 54 (213)
Q Consensus 5 ~~~~~~I~V~ggs~~~~~~~~~~~A~~lG~~lA~~G~~------------------------------lv~GGg~~GlM~ 54 (213)
|+.+++|+|+.-. . ++...+.+.++.++|.++|+. +|+-||. |.|-
T Consensus 2 ~~~~~~v~iv~~~--~-~~~~~e~~~~i~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~GGD-Gt~l 77 (291)
T PRK02155 2 KSQFKTVALIGRY--Q-TPGIAEPLESLAAFLAKRGFEVVFEADTARNIGLTGYPALTPEEIGARADLAVVLGGD-GTML 77 (291)
T ss_pred CCcCCEEEEEecC--C-CHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCcccccccChhHhccCCCEEEEECCc-HHHH
Confidence 4457789999332 2 445555666776666554432 3455665 7666
Q ss_pred HHHHHHHhcCCeEEEE
Q 028138 55 LVSQAVHDGGRHVLGV 70 (213)
Q Consensus 55 a~~~ga~~~gG~viGv 70 (213)
-+++.....+-.++||
T Consensus 78 ~~~~~~~~~~~pilGI 93 (291)
T PRK02155 78 GIGRQLAPYGVPLIGI 93 (291)
T ss_pred HHHHHhcCCCCCEEEE
Confidence 6666655556677877
No 59
>PRK11914 diacylglycerol kinase; Reviewed
Probab=56.31 E-value=22 Score=31.13 Aligned_cols=44 Identities=30% Similarity=0.401 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHCCCe-EEEcCCCcChhHHHHHHHHhcCCeEEEEeCC
Q 028138 28 AAVELGKELVERKLD-LVYGGGSVGLMGLVSQAVHDGGRHVLGVIPK 73 (213)
Q Consensus 28 ~A~~lG~~lA~~G~~-lv~GGg~~GlM~a~~~ga~~~gG~viGv~P~ 73 (213)
.|.++.+.+++.++. ||..||. |...+++.+.... +..+||+|.
T Consensus 52 ~~~~~a~~~~~~~~d~vvv~GGD-GTi~evv~~l~~~-~~~lgiiP~ 96 (306)
T PRK11914 52 DARHLVAAALAKGTDALVVVGGD-GVISNALQVLAGT-DIPLGIIPA 96 (306)
T ss_pred HHHHHHHHHHhcCCCEEEEECCc-hHHHHHhHHhccC-CCcEEEEeC
Confidence 355566666666653 4556675 9998888887643 456999995
No 60
>PRK05723 flavodoxin; Provisional
Probab=55.85 E-value=14 Score=29.53 Aligned_cols=33 Identities=15% Similarity=0.203 Sum_probs=25.9
Q ss_pred ceEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCeEE
Q 028138 9 KRICVFCGSSSGKKATYQEAAVELGKELVERKLDLV 44 (213)
Q Consensus 9 ~~I~V~ggs~~~~~~~~~~~A~~lG~~lA~~G~~lv 44 (213)
++|+|+.||..++.+. .|++|.+.+.+.|+.+.
T Consensus 1 ~~i~I~ygS~tG~ae~---~A~~la~~l~~~g~~~~ 33 (151)
T PRK05723 1 MKVAILSGSVYGTAEE---VARHAESLLKAAGFEAW 33 (151)
T ss_pred CeEEEEEEcCchHHHH---HHHHHHHHHHHCCCcee
Confidence 4789999998885544 47889999988888864
No 61
>KOG2968 consensus Predicted esterase of the alpha-beta hydrolase superfamily (Neuropathy target esterase), contains cAMP-binding domains [General function prediction only]
Probab=55.81 E-value=7.6 Score=39.87 Aligned_cols=43 Identities=30% Similarity=0.499 Sum_probs=33.4
Q ss_pred HHHHHHHHCCCeEEEcCCCcChhHHHHHHHHhc-----------CCeEEEEeCCCC
Q 028138 31 ELGKELVERKLDLVYGGGSVGLMGLVSQAVHDG-----------GRHVLGVIPKTL 75 (213)
Q Consensus 31 ~lG~~lA~~G~~lv~GGg~~GlM~a~~~ga~~~-----------gG~viGv~P~~~ 75 (213)
.|+|.|.-+-+.||.||| |.=+++.-|++.| ||.+||-.-+.+
T Consensus 830 RLAR~LtGnaIgLVLGGG--GARG~ahiGvl~ALeE~GIPvD~VGGTSIGafiGaL 883 (1158)
T KOG2968|consen 830 RLARILTGNAIGLVLGGG--GARGAAHIGVLQALEEAGIPVDMVGGTSIGAFIGAL 883 (1158)
T ss_pred HHHHHHhCCeEEEEecCc--chhhhhHHHHHHHHHHcCCCeeeeccccHHHhhhhh
Confidence 588888889999999987 8899999888763 677777543333
No 62
>COG0063 Predicted sugar kinase [Carbohydrate transport and metabolism]
Probab=55.77 E-value=1.2e+02 Score=26.95 Aligned_cols=130 Identities=21% Similarity=0.228 Sum_probs=65.7
Q ss_pred CCCeEEEcCCC--cChhHHHHHHHHhcC-CeEEEEeCCCCCCCCCCCCCCceeee--cCCHH-HHHHHHHHhcCeEEEec
Q 028138 39 RKLDLVYGGGS--VGLMGLVSQAVHDGG-RHVLGVIPKTLTPREITGDPVGEVKT--VSDMH-QRKAEMARQADAFIALP 112 (213)
Q Consensus 39 ~G~~lv~GGg~--~GlM~a~~~ga~~~g-G~viGv~P~~~~~~e~~~~~~~~~~~--~~~~~-~R~~~l~~~sDa~Ivlp 112 (213)
+|..+|-||.. .|-..-++.+|..+| |.|.=.+|..... .. .....+++. ..+.. ..++.+.+..|++++ +
T Consensus 32 ~G~vliigG~~~y~GA~~laa~aAl~~GaglV~v~~~~~~~~-~~-~s~~Pe~mv~~~~~~~~~~~~~~~~~~~avvi-G 108 (284)
T COG0063 32 YGRVLIIGGSRGYTGAPVLAALAALRAGAGLVSLASPPEAAS-AL-KSYLPELMVIEVEGKKLLEERELVERADAVVI-G 108 (284)
T ss_pred CCeEEEEcCCCCCCCHHHHHHHHHHHhCCCeEEEecchhhhh-hH-hhcCcceeEeecccchhhHHhhhhccCCEEEE-C
Confidence 68888888863 466666677777776 4544444442110 00 111122222 22222 223356677887665 4
Q ss_pred CCCCcHHHHHHHHHHHHhCCCC-CceEEEecCccchHHHHHHHHHHHcCCCCccccCcEEEcCCHHHHHHHHH
Q 028138 113 GGYGTLEELLEVITWAQLGIHR-KPVGLLNVDGFYNSLLSFVDKAVDEGFISPTARRIIISAPTAKKLVRQLE 184 (213)
Q Consensus 113 GG~GTL~Ei~~~~~~~~lg~~~-kPiill~~~g~~~~l~~~l~~~~~~g~i~~~~~~~i~~~~~~ee~~~~l~ 184 (213)
-|.|.-+|..+++... .... +|+|+ +-++.+ .+. +..... ....++++..+-|.-..+.
T Consensus 109 pGlG~~~~~~~~~~~~--l~~~~~p~Vi-DADaL~-----~la---~~~~~~--~~~~~VlTPH~gEf~rL~g 168 (284)
T COG0063 109 PGLGRDAEGQEALKEL--LSSDLKPLVL-DADALN-----LLA---ELPDLL--DERKVVLTPHPGEFARLLG 168 (284)
T ss_pred CCCCCCHHHHHHHHHH--HhccCCCEEE-eCcHHH-----HHH---hCcccc--cCCcEEECCCHHHHHHhcC
Confidence 5688877766665422 1222 88775 444332 111 111111 1112677777777766554
No 63
>TIGR00519 asnASE_I L-asparaginases, type I. Two related families of asparaginase are designated type I and type II according to the terminology in E. coli, which has both: L-asparaginase I is a low-affinity enzyme found in the cytoplasm, while L-asparaginase II is a high-affinity secreted enzyme synthesized with a cleavable signal sequence. This model describes L-asparaginases related to type I of E. coli. Archaeal putative asparaginases are of this type but contain an extra ~ 80 residues in a conserved N-terminal region. These archaeal homologs are included in this model.
Probab=55.26 E-value=29 Score=31.40 Aligned_cols=50 Identities=16% Similarity=0.222 Sum_probs=34.9
Q ss_pred HhcCeEEEecCCCCcHHHHHHHHHHHHhCCCCCceEEEecC-----ccchHHHHHHHH
Q 028138 103 RQADAFIALPGGYGTLEELLEVITWAQLGIHRKPVGLLNVD-----GFYNSLLSFVDK 155 (213)
Q Consensus 103 ~~sDa~IvlpGG~GTL~Ei~~~~~~~~lg~~~kPiill~~~-----g~~~~l~~~l~~ 155 (213)
+..|+|||+.| .-||+|-..++.++- . .+||||+-+.- -..|...+++..
T Consensus 76 ~~~dG~VVtHG-TDTme~TA~~Ls~~l-~-~~kPVVlTGsmrp~~~~~sDg~~NL~~A 130 (336)
T TIGR00519 76 DDYDGFVITHG-TDTMAYTAAALSFML-E-TPKPVVFTGAQRSSDRPSSDAALNLLCA 130 (336)
T ss_pred hcCCeEEEccC-CchHHHHHHHHHHHc-C-CCCCEEEECCCCCCCCcCcchHHHHHHH
Confidence 45899999985 789999998887643 2 38999997541 244555555443
No 64
>TIGR03702 lip_kinase_YegS lipid kinase YegS. Members of this protein family are designated YegS, an apparent lipid kinase family in the Proteobacteria. Bakali, et al. report phosphatidylglycerol kinase activity for the member from Escherichia coli, but refrain from calling that activity synonymous with its biological role. Note that a broader, subfamily-type model (TIGR00147), includes this family but also multiple paralogs in some species and varied functions.
Probab=54.87 E-value=26 Score=30.62 Aligned_cols=44 Identities=25% Similarity=0.382 Sum_probs=29.4
Q ss_pred HHHHHHHHHHCCC-eEEEcCCCcChhHHHHHHHHhcC-C--eEEEEeCC
Q 028138 29 AVELGKELVERKL-DLVYGGGSVGLMGLVSQAVHDGG-R--HVLGVIPK 73 (213)
Q Consensus 29 A~~lG~~lA~~G~-~lv~GGg~~GlM~a~~~ga~~~g-G--~viGv~P~ 73 (213)
|.++.+.+++.++ .||.-||. |...++..|..+.+ + ..+||+|.
T Consensus 41 a~~~a~~~~~~~~d~vv~~GGD-GTi~ev~ngl~~~~~~~~~~lgiiP~ 88 (293)
T TIGR03702 41 AQRYVAEALALGVSTVIAGGGD-GTLREVATALAQIRDDAAPALGLLPL 88 (293)
T ss_pred HHHHHHHHHHcCCCEEEEEcCC-hHHHHHHHHHHhhCCCCCCcEEEEcC
Confidence 3455655566654 34455665 99999999998653 2 25899994
No 65
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=54.76 E-value=1.4e+02 Score=25.88 Aligned_cols=69 Identities=17% Similarity=0.181 Sum_probs=40.5
Q ss_pred HHHHHHHHhcCeEEEecCCCCcHHHHHHHHHHHHhCCCCCceEEEecCccchHHHHHHHHHHHcCCCCccccCcEEEcCC
Q 028138 96 QRKAEMARQADAFIALPGGYGTLEELLEVITWAQLGIHRKPVGLLNVDGFYNSLLSFVDKAVDEGFISPTARRIIISAPT 175 (213)
Q Consensus 96 ~R~~~l~~~sDa~IvlpGG~GTL~Ei~~~~~~~~lg~~~kPiill~~~g~~~~l~~~l~~~~~~g~i~~~~~~~i~~~~~ 175 (213)
..-..++..||++|.=+| |..+|. +. .++|+++++..+-+.. ..+.|. .+...+|
T Consensus 269 ~~~~~l~~~ad~~v~~Sg--gi~~Ea---~~------~g~PvI~~~~~~~~~~-------~~~~g~-------~~~~~~~ 323 (363)
T cd03786 269 LYFLLLLKNADLVLTDSG--GIQEEA---SF------LGVPVLNLRDRTERPE-------TVESGT-------NVLVGTD 323 (363)
T ss_pred HHHHHHHHcCcEEEEcCc--cHHhhh---hh------cCCCEEeeCCCCccch-------hhheee-------EEecCCC
Confidence 344456778999985555 444333 21 4699999864322221 222332 1333457
Q ss_pred HHHHHHHHHhhcCC
Q 028138 176 AKKLVRQLEEYVPE 189 (213)
Q Consensus 176 ~ee~~~~l~~~~~~ 189 (213)
++++.+.+.+....
T Consensus 324 ~~~i~~~i~~ll~~ 337 (363)
T cd03786 324 PEAILAAIEKLLSD 337 (363)
T ss_pred HHHHHHHHHHHhcC
Confidence 99999999887554
No 66
>COG0549 ArcC Carbamate kinase [Amino acid transport and metabolism]
Probab=53.74 E-value=32 Score=30.92 Aligned_cols=61 Identities=28% Similarity=0.309 Sum_probs=33.8
Q ss_pred HHHHHHHHCCCeEEEcCCCcChhHHHHHHHHhcCCeEEEEeCCCCCCCCCCCCCCceeeecCCHHHHHHHHHHhcCeEEE
Q 028138 31 ELGKELVERKLDLVYGGGSVGLMGLVSQAVHDGGRHVLGVIPKTLTPREITGDPVGEVKTVSDMHQRKAEMARQADAFIA 110 (213)
Q Consensus 31 ~lG~~lA~~G~~lv~GGg~~GlM~a~~~ga~~~gG~viGv~P~~~~~~e~~~~~~~~~~~~~~~~~R~~~l~~~sDa~Iv 110 (213)
+.-+.|.++|+.+|+.||. |+. +.+.++...|| +-++-+++..-+---.-.+|.+|+
T Consensus 175 ~~Ik~L~~~g~vVI~~GGG-GIP------Vv~~~~~~~GV----------------eAVIDKDlasalLA~~i~AD~liI 231 (312)
T COG0549 175 EAIKALLESGHVVIAAGGG-GIP------VVEEGAGLQGV----------------EAVIDKDLASALLAEQIDADLLII 231 (312)
T ss_pred HHHHHHHhCCCEEEEeCCC-Ccc------eEecCCCccee----------------eEEEccHHHHHHHHHHhcCCEEEE
Confidence 3456666677777766664 554 22222212232 445667775333333346899999
Q ss_pred ecCC
Q 028138 111 LPGG 114 (213)
Q Consensus 111 lpGG 114 (213)
|-.-
T Consensus 232 LTdV 235 (312)
T COG0549 232 LTDV 235 (312)
T ss_pred Eecc
Confidence 9764
No 67
>PRK00861 putative lipid kinase; Reviewed
Probab=53.36 E-value=25 Score=30.73 Aligned_cols=43 Identities=33% Similarity=0.580 Sum_probs=30.9
Q ss_pred HHHHHHHHHHCCCe-EEEcCCCcChhHHHHHHHHhcCCeEEEEeCC
Q 028138 29 AVELGKELVERKLD-LVYGGGSVGLMGLVSQAVHDGGRHVLGVIPK 73 (213)
Q Consensus 29 A~~lG~~lA~~G~~-lv~GGg~~GlM~a~~~ga~~~gG~viGv~P~ 73 (213)
|.++.+..++.++. ||..||. |-...+..+.... +..+||+|.
T Consensus 46 a~~~a~~~~~~~~d~vv~~GGD-GTl~evv~~l~~~-~~~lgviP~ 89 (300)
T PRK00861 46 ADQLAQEAIERGAELIIASGGD-GTLSAVAGALIGT-DIPLGIIPR 89 (300)
T ss_pred HHHHHHHHHhcCCCEEEEECCh-HHHHHHHHHHhcC-CCcEEEEcC
Confidence 34556556666654 5567775 9999999998765 467999995
No 68
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=52.83 E-value=97 Score=28.67 Aligned_cols=95 Identities=24% Similarity=0.228 Sum_probs=52.7
Q ss_pred HHHCCCeEEEcCCCcC----hhHHHHHHHHhcCCeEEEEeCCCCCCCCCCCCCCceeeecCCHHHHHHHHHHhcCeEEEe
Q 028138 36 LVERKLDLVYGGGSVG----LMGLVSQAVHDGGRHVLGVIPKTLTPREITGDPVGEVKTVSDMHQRKAEMARQADAFIAL 111 (213)
Q Consensus 36 lA~~G~~lv~GGg~~G----lM~a~~~ga~~~gG~viGv~P~~~~~~e~~~~~~~~~~~~~~~~~R~~~l~~~sDa~Ivl 111 (213)
.+.+....++=|. .+ +-+.+.+...+.+.++|=-..+.. . . ..+-....++..... ...++..||+|| -
T Consensus 234 ~~d~~~vyvslGt-~~~~~~l~~~~~~a~~~l~~~vi~~~~~~~-~-~-~~~~p~n~~v~~~~p--~~~~l~~ad~vI-~ 306 (406)
T COG1819 234 PADRPIVYVSLGT-VGNAVELLAIVLEALADLDVRVIVSLGGAR-D-T-LVNVPDNVIVADYVP--QLELLPRADAVI-H 306 (406)
T ss_pred cCCCCeEEEEcCC-cccHHHHHHHHHHHHhcCCcEEEEeccccc-c-c-cccCCCceEEecCCC--HHHHhhhcCEEE-e
Confidence 3445565565444 36 345566666677877765543311 1 0 011111223333332 223778888765 6
Q ss_pred cCCCCcHHHHHHHHHHHHhCCCCCceEEEecCccchH
Q 028138 112 PGGYGTLEELLEVITWAQLGIHRKPVGLLNVDGFYNS 148 (213)
Q Consensus 112 pGG~GTL~Ei~~~~~~~~lg~~~kPiill~~~g~~~~ 148 (213)
.||.||..|... +++|++++-. .||.
T Consensus 307 hGG~gtt~eaL~---------~gvP~vv~P~--~~DQ 332 (406)
T COG1819 307 HGGAGTTSEALY---------AGVPLVVIPD--GADQ 332 (406)
T ss_pred cCCcchHHHHHH---------cCCCEEEecC--Ccch
Confidence 899999887642 5799999853 3554
No 69
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=52.59 E-value=51 Score=27.39 Aligned_cols=69 Identities=23% Similarity=0.310 Sum_probs=39.3
Q ss_pred HHHHhcCeEEEecCCCCcHHHHHHHHHHHHhCCCCCceEEEecCccchHHHHHHHHHHHcCCCCccccCcEEEcCCHHHH
Q 028138 100 EMARQADAFIALPGGYGTLEELLEVITWAQLGIHRKPVGLLNVDGFYNSLLSFVDKAVDEGFISPTARRIIISAPTAKKL 179 (213)
Q Consensus 100 ~l~~~sDa~IvlpGG~GTL~Ei~~~~~~~~lg~~~kPiill~~~g~~~~l~~~l~~~~~~g~i~~~~~~~i~~~~~~ee~ 179 (213)
-+...||++|.-...-|.-.=+.|++. .++||+.-+..+. .. +++ + .....+.-.+|++++
T Consensus 259 ~~~~~adi~i~ps~~e~~~~~~~Ea~~------~G~Pvi~s~~~~~-~~---~i~----~-----~~~g~~~~~~~~~~~ 319 (359)
T cd03808 259 ELLAAADVFVLPSYREGLPRVLLEAMA------MGRPVIATDVPGC-RE---AVI----D-----GVNGFLVPPGDAEAL 319 (359)
T ss_pred HHHHhccEEEecCcccCcchHHHHHHH------cCCCEEEecCCCc-hh---hhh----c-----CcceEEECCCCHHHH
Confidence 456789987654332222233556664 5799998765432 22 111 1 122334445689999
Q ss_pred HHHHHhhc
Q 028138 180 VRQLEEYV 187 (213)
Q Consensus 180 ~~~l~~~~ 187 (213)
.+.|.+..
T Consensus 320 ~~~i~~l~ 327 (359)
T cd03808 320 ADAIERLI 327 (359)
T ss_pred HHHHHHHH
Confidence 88888753
No 70
>PF00861 Ribosomal_L18p: Ribosomal L18p/L5e family; InterPro: IPR005484 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family includes L18 from bacteria and L5 from eukaryotes. The ribosomal 5S RNA is the only known rRNA species to bind a ribosomal protein before its assembly into the ribosomal subunits []. In eukaryotes, the 5S rRNA molecule binds one protein species, a 34kDa protein which has been implicated in the intracellular transport of 5 S rRNA, while in bacteria it binds two or three different protein species []. ; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 4A1E_M 4A1C_M 4A1A_M 4A17_M 3IZR_Q 3O58_E 1S1I_E 3IZS_Q 3O5H_E 1KQS_M ....
Probab=51.23 E-value=60 Score=24.88 Aligned_cols=39 Identities=26% Similarity=0.480 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHH----CCC-eEEEcCC---CcChhHHHHHHHHhcCC
Q 028138 27 EAAVELGKELVE----RKL-DLVYGGG---SVGLMGLVSQAVHDGGR 65 (213)
Q Consensus 27 ~~A~~lG~~lA~----~G~-~lv~GGg---~~GlM~a~~~ga~~~gG 65 (213)
+.|+.+|..||+ .|+ .++++=+ ..|-+.|+++|+.++|-
T Consensus 71 ~aa~~vG~lla~ra~~~gi~~v~fdr~~~~y~grv~a~~~~~re~Gl 117 (119)
T PF00861_consen 71 EAAYLVGELLAKRALEKGIAKVVFDRGGYKYHGRVKALADGAREGGL 117 (119)
T ss_dssp HHHHHHHHHHHHHHHHTTSSEEEECTSTSSSSSHHHHHHHHHHHTTC
T ss_pred ehHHHHHHHHHHHHHHcCCcEEEEcCCCCcccHHHHHHHHHHHHcCC
Confidence 567888888877 576 4455322 25899999999999874
No 71
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=51.07 E-value=66 Score=30.19 Aligned_cols=103 Identities=20% Similarity=0.275 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHH-----CCCeEEEcCCCcC---hhHHHHHHHHhcCC--eEEEEeCCCCCCCCCCCCCCceeeecCCHH-
Q 028138 27 EAAVELGKELVE-----RKLDLVYGGGSVG---LMGLVSQAVHDGGR--HVLGVIPKTLTPREITGDPVGEVKTVSDMH- 95 (213)
Q Consensus 27 ~~A~~lG~~lA~-----~G~~lv~GGg~~G---lM~a~~~ga~~~gG--~viGv~P~~~~~~e~~~~~~~~~~~~~~~~- 95 (213)
+.|..+++.+|+ .+...+|||-..| ||.|+...+.+.+- +++.+....+. +++..-.....|.
T Consensus 96 ~~A~aa~~~va~~~g~~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~f~------~~~v~a~~~~~~~~ 169 (408)
T COG0593 96 RLAYAAAKAVAENPGGAYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSEDFT------NDFVKALRDNEMEK 169 (408)
T ss_pred HHHHHHHHHHHhccCCcCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHHHHH------HHHHHHHHhhhHHH
Confidence 567888888888 4677788876556 99999999999876 55555322110 0111011112332
Q ss_pred HHHHHHHHhcCeEEE-----ecCCCCcHHHHHHHHHHHHhCCCCCceEEE
Q 028138 96 QRKAEMARQADAFIA-----LPGGYGTLEELLEVITWAQLGIHRKPVGLL 140 (213)
Q Consensus 96 ~R~~~l~~~sDa~Iv-----lpGG~GTL~Ei~~~~~~~~lg~~~kPiill 140 (213)
-|+.. +.|.+++ +.|.-.|.+|+|.... .+...+|-|++-
T Consensus 170 Fk~~y---~~dlllIDDiq~l~gk~~~qeefFh~FN--~l~~~~kqIvlt 214 (408)
T COG0593 170 FKEKY---SLDLLLIDDIQFLAGKERTQEEFFHTFN--ALLENGKQIVLT 214 (408)
T ss_pred HHHhh---ccCeeeechHhHhcCChhHHHHHHHHHH--HHHhcCCEEEEE
Confidence 22222 6777765 7788899999998764 444345544443
No 72
>PRK14569 D-alanyl-alanine synthetase A; Provisional
Probab=50.69 E-value=41 Score=29.47 Aligned_cols=37 Identities=19% Similarity=0.282 Sum_probs=29.0
Q ss_pred ceEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCeEEE
Q 028138 9 KRICVFCGSSSGKKATYQEAAVELGKELVERKLDLVY 45 (213)
Q Consensus 9 ~~I~V~ggs~~~~~~~~~~~A~~lG~~lA~~G~~lv~ 45 (213)
++|+|.+|......+.=...++.+.+.|.+.||.++.
T Consensus 4 ~~i~vl~gg~s~e~~vsl~s~~~v~~aL~~~g~~~~~ 40 (296)
T PRK14569 4 EKIVVLYGGDSPEREVSLKSGKAVLDSLISQGYDAVG 40 (296)
T ss_pred cEEEEEeCCCCCchHhHHHHHHHHHHHHHHcCCEEEE
Confidence 3688887766665666668899999999999998653
No 73
>PRK13054 lipid kinase; Reviewed
Probab=50.54 E-value=34 Score=29.94 Aligned_cols=43 Identities=23% Similarity=0.418 Sum_probs=27.8
Q ss_pred HHHHHHHHHCCC-eEEEcCCCcChhHHHHHHHHhcC-C--eEEEEeCC
Q 028138 30 VELGKELVERKL-DLVYGGGSVGLMGLVSQAVHDGG-R--HVLGVIPK 73 (213)
Q Consensus 30 ~~lG~~lA~~G~-~lv~GGg~~GlM~a~~~ga~~~g-G--~viGv~P~ 73 (213)
.++.+.+++.++ .||..||. |....++.+..... + ..+||+|.
T Consensus 46 ~~~a~~~~~~~~d~vvv~GGD-GTl~evv~~l~~~~~~~~~~lgiiP~ 92 (300)
T PRK13054 46 ARYVEEALALGVATVIAGGGD-GTINEVATALAQLEGDARPALGILPL 92 (300)
T ss_pred HHHHHHHHHcCCCEEEEECCc-cHHHHHHHHHHhhccCCCCcEEEEeC
Confidence 444554455554 34566675 98888888877542 2 46999995
No 74
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=49.85 E-value=49 Score=30.25 Aligned_cols=140 Identities=23% Similarity=0.254 Sum_probs=73.6
Q ss_pred CCeEEEcCCCcChhHHHHHHHHhcCCeEEEEeCCCCCCCCCCCCCCceeeecCCHHHHHHHHHHhcCeEEEecCCCCcHH
Q 028138 40 KLDLVYGGGSVGLMGLVSQAVHDGGRHVLGVIPKTLTPREITGDPVGEVKTVSDMHQRKAEMARQADAFIALPGGYGTLE 119 (213)
Q Consensus 40 G~~lv~GGg~~GlM~a~~~ga~~~gG~viGv~P~~~~~~e~~~~~~~~~~~~~~~~~R~~~l~~~sDa~IvlpGG~GTL~ 119 (213)
.+.+|+|.|..|.| +.+=|+..|-+|++|.-+.. ..+...+.-.+.++...-.+....+.+..|++|..-+ .=|++
T Consensus 168 ~~V~I~G~GGlGh~--avQ~Aka~ga~Via~~~~~~-K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~tv~-~~~~~ 243 (339)
T COG1064 168 KWVAVVGAGGLGHM--AVQYAKAMGAEVIAITRSEE-KLELAKKLGADHVINSSDSDALEAVKEIADAIIDTVG-PATLE 243 (339)
T ss_pred CEEEEECCcHHHHH--HHHHHHHcCCeEEEEeCChH-HHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEECCC-hhhHH
Confidence 45678998855555 55667778899999953321 1111111112333322122222333334999999999 77888
Q ss_pred HHHHHHHHH----HhCCCC-CceE-------EEec-------CccchHHHHHHHHHHHcCCCCccccCcEEEcCCHHHHH
Q 028138 120 ELLEVITWA----QLGIHR-KPVG-------LLNV-------DGFYNSLLSFVDKAVDEGFISPTARRIIISAPTAKKLV 180 (213)
Q Consensus 120 Ei~~~~~~~----~lg~~~-kPii-------ll~~-------~g~~~~l~~~l~~~~~~g~i~~~~~~~i~~~~~~ee~~ 180 (213)
.....+... +.|... .|+. +++. .|--.++.++|+ +..+|-|.+...+. +-.++..|++
T Consensus 244 ~~l~~l~~~G~~v~vG~~~~~~~~~~~~~~li~~~~~i~GS~~g~~~d~~e~l~-f~~~g~Ikp~i~e~-~~l~~in~A~ 321 (339)
T COG1064 244 PSLKALRRGGTLVLVGLPGGGPIPLLPAFLLILKEISIVGSLVGTRADLEEALD-FAAEGKIKPEILET-IPLDEINEAY 321 (339)
T ss_pred HHHHHHhcCCEEEEECCCCCcccCCCCHHHhhhcCeEEEEEecCCHHHHHHHHH-HHHhCCceeeEEee-ECHHHHHHHH
Confidence 777766421 112321 2211 1110 123345666666 55667676554422 3345577777
Q ss_pred HHHHh
Q 028138 181 RQLEE 185 (213)
Q Consensus 181 ~~l~~ 185 (213)
+.+.+
T Consensus 322 ~~m~~ 326 (339)
T COG1064 322 ERMEK 326 (339)
T ss_pred HHHHc
Confidence 77665
No 75
>PF01820 Dala_Dala_lig_N: D-ala D-ala ligase N-terminus; InterPro: IPR011127 This entry represents the N-terminal region of the D-alanine--D-alanine ligase enzyme (6.3.2.4 from EC) which is thought to be involved in substrate binding []. D-Alanine is one of the central molecules of the cross-linking step of peptidoglycan assembly. There are three enzymes involved in the D-alanine branch of peptidoglycan biosynthesis: the pyridoxal phosphate-dependent D-alanine racemase (Alr), the ATP-dependent D-alanine:D-alanine ligase (Ddl), and the ATP-dependent D-alanine:D-alanine-adding enzyme (MurF) [].; GO: 0008716 D-alanine-D-alanine ligase activity, 0009252 peptidoglycan biosynthetic process, 0005618 cell wall; PDB: 4EG0_B 3E5N_A 3RFC_A 3R5F_A 1IOV_A 1IOW_A 2DLN_A 3Q1K_D 3I12_C 3N8D_B ....
Probab=49.81 E-value=17 Score=27.56 Aligned_cols=36 Identities=19% Similarity=0.321 Sum_probs=28.5
Q ss_pred ceEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCeEE
Q 028138 9 KRICVFCGSSSGKKATYQEAAVELGKELVERKLDLV 44 (213)
Q Consensus 9 ~~I~V~ggs~~~~~~~~~~~A~~lG~~lA~~G~~lv 44 (213)
|+|+|++|....+.+.=...|+.+-+.|.+.+|.++
T Consensus 1 m~v~vlfGG~S~EheVSl~Sa~~v~~~L~~~~y~v~ 36 (117)
T PF01820_consen 1 MRVAVLFGGRSSEHEVSLRSARNVYEALDKEKYEVI 36 (117)
T ss_dssp EEEEEEEETSSTTHHHHHHHHHHHHHHSHTTTEEEE
T ss_pred CeEEEEeccCchhHHHHHHHHHHHHHHHhhhcceEE
Confidence 477877777666566666789999999999999987
No 76
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=49.77 E-value=93 Score=26.54 Aligned_cols=71 Identities=15% Similarity=0.245 Sum_probs=41.0
Q ss_pred HHHHHHHhcCeEEEec--CCCCcHHHHHHHHHHHHhCCCCCceEEEecCccchHHHHHHHHHHHcCCCCccccCcEEEcC
Q 028138 97 RKAEMARQADAFIALP--GGYGTLEELLEVITWAQLGIHRKPVGLLNVDGFYNSLLSFVDKAVDEGFISPTARRIIISAP 174 (213)
Q Consensus 97 R~~~l~~~sDa~Ivlp--GG~GTL~Ei~~~~~~~~lg~~~kPiill~~~g~~~~l~~~l~~~~~~g~i~~~~~~~i~~~~ 174 (213)
....+...||++|.-. .|+|. =+.|++. .++|||..+..+.-+- +.......+.-..
T Consensus 257 ~~~~~~~~ad~~l~ps~~e~~g~--~~~Eam~------~g~PvI~~~~~~~~e~-------------~~~~~~g~~~~~~ 315 (365)
T cd03825 257 SLALIYSAADVFVVPSLQENFPN--TAIEALA------CGTPVVAFDVGGIPDI-------------VDHGVTGYLAKPG 315 (365)
T ss_pred HHHHHHHhCCEEEeccccccccH--HHHHHHh------cCCCEEEecCCCChhh-------------eeCCCceEEeCCC
Confidence 3445678899987643 23333 3556664 5799998876533221 1111122333445
Q ss_pred CHHHHHHHHHhhcC
Q 028138 175 TAKKLVRQLEEYVP 188 (213)
Q Consensus 175 ~~ee~~~~l~~~~~ 188 (213)
|++++.+.|.+...
T Consensus 316 ~~~~~~~~l~~l~~ 329 (365)
T cd03825 316 DPEDLAEGIEWLLA 329 (365)
T ss_pred CHHHHHHHHHHHHh
Confidence 78888888877654
No 77
>cd07025 Peptidase_S66 LD-Carboxypeptidase, a serine protease, includes microcin C7 self immunity protein. LD-carboxypeptidase (Muramoyltetrapeptide carboxypeptidase; EC 3.4.17.13; Merops family S66; initially described as Carboxypeptidase II) family also includes the microcin c7 self-immunity protein (MccF) as well as uncharacterized proteins including hypothetical proteins. LD-carboxypeptidase hydrolyzes the amide bond that links the dibasic amino acids to C-terminal D-amino acids. The physiological substrates of LD-carboxypeptidase are tetrapeptide fragments (such as UDP-MurNAc-tetrapeptides) that are produced when bacterial cell walls are degraded; they contain an L-configured residue (L-lysine or meso-diaminopimelic acid residue) as the penultimate residue and D-alanine as the ultimate residue. A possible role of LD-carboxypeptidase is in peptidoglycan recycling whereby the resulting tripeptide (precursor for murein synthesis) can be reconverted into peptidoglycan by attachment o
Probab=49.70 E-value=1.5e+02 Score=25.94 Aligned_cols=34 Identities=24% Similarity=0.365 Sum_probs=25.7
Q ss_pred hcCeEEEecCCCCcHHHHHHHHHHHHhCCCCCceE
Q 028138 104 QADAFIALPGGYGTLEELLEVITWAQLGIHRKPVG 138 (213)
Q Consensus 104 ~sDa~IvlpGG~GTL~Ei~~~~~~~~lg~~~kPii 138 (213)
..|+++..-||.|+. ++..-+.|.++..++|+++
T Consensus 62 ~i~aI~~~rGG~ga~-rlL~~ld~~~~~~~pK~~i 95 (282)
T cd07025 62 EIKAIWCARGGYGAN-RLLPYLDYDLIRANPKIFV 95 (282)
T ss_pred CCCEEEEcCCcCCHH-HhhhhCCHHHHhhCCeEEE
Confidence 468999999999996 4666677777766666654
No 78
>cd01171 YXKO-related B.subtilis YXKO protein of unknown function and related proteins. Based on the conservation of the ATP binding site, the substrate binding site and the Mg2+binding site and structural homology this group is a member of the ribokinase-like superfamily.
Probab=49.68 E-value=63 Score=27.25 Aligned_cols=41 Identities=32% Similarity=0.426 Sum_probs=22.6
Q ss_pred HHHhcCeEEEecCCCCcHHHHHHHHHHHHhCCCCCceEEEecCcc
Q 028138 101 MARQADAFIALPGGYGTLEELLEVITWAQLGIHRKPVGLLNVDGF 145 (213)
Q Consensus 101 l~~~sDa~IvlpGG~GTL~Ei~~~~~~~~lg~~~kPiill~~~g~ 145 (213)
+....|++++ .+|.|+-+.+..+.... ..++.|+| +|.++.
T Consensus 74 ~~~~~d~v~i-g~gl~~~~~~~~i~~~~--~~~~~pvV-lDa~~~ 114 (254)
T cd01171 74 LLERADAVVI-GPGLGRDEEAAEILEKA--LAKDKPLV-LDADAL 114 (254)
T ss_pred hhccCCEEEE-ecCCCCCHHHHHHHHHH--HhcCCCEE-EEcHHH
Confidence 3456777665 55688754444443322 23467855 676653
No 79
>cd07062 Peptidase_S66_mccF_like Microcin C7 self-immunity protein determines resistance to exogenous microcin C7. Microcin C7 self-immunity protein (mccF): MccF, a homolog of the LD-carboxypeptidase family, mediates resistance against exogenously added microcin C7 (MccC7), a ribosomally-encoded peptide antibiotic that contains a phosphoramidate linkage to adenosine monophosphate at its C-terminus. The plasmid-encoded mccF gene is transcribed in the opposite direction to the other five genes (mccA-E) and is required for the full expression of immunity but not for production. The catalytic triad residues (Ser, His, Glu) of LD-carboxypeptidase are also conserved in MccF, strongly suggesting that MccF shares the hydrolytic activity with LD-carboxypeptidases. Substrates of MccF have not been deduced, but could likely be microcin C7 precursors. The possible role of MccF is to defend producer cells against exogenous microcin from re-entering after having been exported. It is suggested that M
Probab=49.59 E-value=1.9e+02 Score=25.65 Aligned_cols=33 Identities=24% Similarity=0.243 Sum_probs=25.5
Q ss_pred cCeEEEecCCCCcHHHHHHHHHHHHhCCCCCceE
Q 028138 105 ADAFIALPGGYGTLEELLEVITWAQLGIHRKPVG 138 (213)
Q Consensus 105 sDa~IvlpGG~GTL~Ei~~~~~~~~lg~~~kPii 138 (213)
.|+++..-||.|+. ++..-+.+..+..++|+++
T Consensus 67 i~aI~~~rGG~g~~-rlL~~lD~~~i~~~PK~fi 99 (308)
T cd07062 67 IKAIIPTIGGDDSN-ELLPYLDYELIKKNPKIFI 99 (308)
T ss_pred CCEEEECCcccCHh-hhhhhcCHHHHhhCCCEEE
Confidence 58999999999985 4777677777766667654
No 80
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=49.37 E-value=1.1e+02 Score=25.10 Aligned_cols=72 Identities=17% Similarity=0.281 Sum_probs=40.4
Q ss_pred HHHHHHHhcCeEEEecC--CCCcHHHHHHHHHHHHhCCCCCceEEEecCccchHHHHHHHHHHHcCCCCccccCcEEEcC
Q 028138 97 RKAEMARQADAFIALPG--GYGTLEELLEVITWAQLGIHRKPVGLLNVDGFYNSLLSFVDKAVDEGFISPTARRIIISAP 174 (213)
Q Consensus 97 R~~~l~~~sDa~IvlpG--G~GTL~Ei~~~~~~~~lg~~~kPiill~~~g~~~~l~~~l~~~~~~g~i~~~~~~~i~~~~ 174 (213)
....++..||++|.-.. |+|+ =+.|++. .++||+..+..+....+. +.+ ....+.-..
T Consensus 245 ~~~~~~~~ad~~i~ps~~e~~~~--~~~Ea~a------~G~Pvi~~~~~~~~~~~~-------~~~-----~~g~~~~~~ 304 (348)
T cd03820 245 NIEEYYAKASIFVLTSRFEGFPM--VLLEAMA------FGLPVISFDCPTGPSEII-------EDG-----VNGLLVPNG 304 (348)
T ss_pred hHHHHHHhCCEEEeCccccccCH--HHHHHHH------cCCCEEEecCCCchHhhh-------ccC-----cceEEeCCC
Confidence 34456678998775432 3333 2566664 579999876543333221 111 122233345
Q ss_pred CHHHHHHHHHhhcC
Q 028138 175 TAKKLVRQLEEYVP 188 (213)
Q Consensus 175 ~~ee~~~~l~~~~~ 188 (213)
|++++.+.|.+...
T Consensus 305 ~~~~~~~~i~~ll~ 318 (348)
T cd03820 305 DVEALAEALLRLME 318 (348)
T ss_pred CHHHHHHHHHHHHc
Confidence 77888888887643
No 81
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=49.18 E-value=65 Score=25.09 Aligned_cols=45 Identities=16% Similarity=0.161 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHCCCeEEEcCCCcChhHHHHHHHHhcCCeEEEE
Q 028138 25 YQEAAVELGKELVERKLDLVYGGGSVGLMGLVSQAVHDGGRHVLGV 70 (213)
Q Consensus 25 ~~~~A~~lG~~lA~~G~~lv~GGg~~GlM~a~~~ga~~~gG~viGv 70 (213)
+-..+.-+...|...||.+++-|.. =-.+.+.+.|.+.+..+||+
T Consensus 15 Hd~g~~iv~~~l~~~GfeVi~lg~~-~s~e~~v~aa~e~~adii~i 59 (132)
T TIGR00640 15 HDRGAKVIATAYADLGFDVDVGPLF-QTPEEIARQAVEADVHVVGV 59 (132)
T ss_pred cHHHHHHHHHHHHhCCcEEEECCCC-CCHHHHHHHHHHcCCCEEEE
Confidence 3334556677788899999998876 56778889999999999999
No 82
>PF00781 DAGK_cat: Diacylglycerol kinase catalytic domain; InterPro: IPR001206 The DAG-kinase catalytic domain or DAGKc domain is present in mammalian lipid kinases, such as diacylglycerol (DAG), ceramide and sphingosine kinases, as well as in related bacterial proteins [, ]. Eukaryotic DAG-kinase (2.7.1.107 from EC) catalyses the phosphorylation of DAG to phosphatidic acid, thus modulating the balance between the two signaling lipids. At least ten different isoforms have been identified in mammals, which form 5 groups characterised by different functional domains, such as the calcium-binding EF hand (see PDOC00018 from PROSITEDOC), PH (see PDOC50003 from PROSITEDOC), SAM (see PDOC50105 from PROSITEDOC) , DAG/PE-binding C1 domain (see PDOC00379 from PROSITEDOC) and ankyrin repeats (see PDOC50088 from PROSITEDOC) []. In bacteria, an integral membrane DAG kinase forms a homotrimeric protein that lacks the DAGKc domain (see PDOC00820 from PROSITEDOC). In contrast, the bacterial yegS protein is a soluble cytosolic protein that contains the DAGKc domain in the N-terminal part. YegS is a lipid kinase with two structural domains, wherein the active site is located in the interdomain cleft, C-terminal to the DAGKc domain which forms an alpha/beta fold []. The tertiary structure resembles that of NAD kinases and contains a metal-binding site in the C-terminal region [, ]. This domain is usually associated with an accessory domain (see IPR000756 from INTERPRO).; GO: 0004143 diacylglycerol kinase activity, 0007205 activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway; PDB: 2JGR_A 2BON_A 3T5P_D 3S40_A 2P1R_A 2QV7_A 2QVL_A.
Probab=48.71 E-value=27 Score=26.50 Aligned_cols=39 Identities=26% Similarity=0.468 Sum_probs=24.3
Q ss_pred HHHhcCe--EEEecCCCCcHHHHHHHHHHHHhCCC-CCceEEEe
Q 028138 101 MARQADA--FIALPGGYGTLEELLEVITWAQLGIH-RKPVGLLN 141 (213)
Q Consensus 101 l~~~sDa--~IvlpGG~GTL~Ei~~~~~~~~lg~~-~kPiill~ 141 (213)
+....+. .|+.-||=||++|+...+. +.... ..|+.++-
T Consensus 48 ~~~~~~~~~~ivv~GGDGTl~~vv~~l~--~~~~~~~~~l~iiP 89 (130)
T PF00781_consen 48 ILALDDYPDVIVVVGGDGTLNEVVNGLM--GSDREDKPPLGIIP 89 (130)
T ss_dssp HHHHTTS-SEEEEEESHHHHHHHHHHHC--TSTSSS--EEEEEE
T ss_pred HHhhccCccEEEEEcCccHHHHHHHHHh--hcCCCccceEEEec
Confidence 3444544 8888999999999987762 11111 12777773
No 83
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=48.60 E-value=1e+02 Score=26.73 Aligned_cols=72 Identities=17% Similarity=0.263 Sum_probs=44.1
Q ss_pred HHHHHHHhcCeEEEec-CCCCcHHHHHHHHHHHHhCCCCCceEEEecCccchHHHHHHHHHHHcCCCCccccCcEEEcCC
Q 028138 97 RKAEMARQADAFIALP-GGYGTLEELLEVITWAQLGIHRKPVGLLNVDGFYNSLLSFVDKAVDEGFISPTARRIIISAPT 175 (213)
Q Consensus 97 R~~~l~~~sDa~Ivlp-GG~GTL~Ei~~~~~~~~lg~~~kPiill~~~g~~~~l~~~l~~~~~~g~i~~~~~~~i~~~~~ 175 (213)
...-+...||++|... -|+|.. +.|++. .++||+..+.+| +..+ +.......+.-.+|
T Consensus 254 ~~~~~~~~ad~~v~ps~e~~g~~--~~Eama------~G~Pvi~~~~~~-~~e~------------i~~~~~G~~~~~~~ 312 (351)
T cd03804 254 ELRDLYARARAFLFPAEEDFGIV--PVEAMA------SGTPVIAYGKGG-ALET------------VIDGVTGILFEEQT 312 (351)
T ss_pred HHHHHHHhCCEEEECCcCCCCch--HHHHHH------cCCCEEEeCCCC-Ccce------------eeCCCCEEEeCCCC
Confidence 3455678899888533 566664 456664 579999987643 2221 11112233444678
Q ss_pred HHHHHHHHHhhcCC
Q 028138 176 AKKLVRQLEEYVPE 189 (213)
Q Consensus 176 ~ee~~~~l~~~~~~ 189 (213)
++++.+.|..+...
T Consensus 313 ~~~la~~i~~l~~~ 326 (351)
T cd03804 313 VESLAAAVERFEKN 326 (351)
T ss_pred HHHHHHHHHHHHhC
Confidence 99988888876443
No 84
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=48.54 E-value=27 Score=28.80 Aligned_cols=89 Identities=17% Similarity=0.235 Sum_probs=55.6
Q ss_pred HHHhcCeEEEecCCCCcHHHHHHHHHHH-----HhC-CCCCceEEEec--CccchH--HHHHHHHHHHcCCC--CccccC
Q 028138 101 MARQADAFIALPGGYGTLEELLEVITWA-----QLG-IHRKPVGLLNV--DGFYNS--LLSFVDKAVDEGFI--SPTARR 168 (213)
Q Consensus 101 l~~~sDa~IvlpGG~GTL~Ei~~~~~~~-----~lg-~~~kPiill~~--~g~~~~--l~~~l~~~~~~g~i--~~~~~~ 168 (213)
+...+|++||.|=..+|+.-+..=++-. -+. +.++|+++.-. ...|.. ..+-++++.+.|+. ++....
T Consensus 74 l~~~aD~~vIaPaTantlakiA~GiaDnllt~~~~a~~~~~pvvi~Pamn~~m~~~p~~~~Nl~~L~~~G~~vi~p~~g~ 153 (182)
T PRK07313 74 LAKRADLFLVAPATANTIAKLAHGIADDLVTSVALALPATTPKLIAPAMNTKMYENPATQRNLKTLKEDGVQEIEPKEGL 153 (182)
T ss_pred cccccCEEEEeeCCHhHHHHHHccccCcHHHHHHHHcCCCCCEEEEECCCHHHhcCHHHHHHHHHHHHCCCEEECCCCCc
Confidence 4467899999999999988765321100 011 24799998832 247754 33456667776654 222111
Q ss_pred ------cEEEcCCHHHHHHHHHhhcCC
Q 028138 169 ------IIISAPTAKKLVRQLEEYVPE 189 (213)
Q Consensus 169 ------~i~~~~~~ee~~~~l~~~~~~ 189 (213)
-..--.+++|+++++.++..+
T Consensus 154 la~~~~g~g~~~~~~~i~~~v~~~~~~ 180 (182)
T PRK07313 154 LACGDEGYGALADIETILETIENTLKE 180 (182)
T ss_pred cccCCccCCCCCCHHHHHHHHHHHhcc
Confidence 145578999999999886543
No 85
>PRK13059 putative lipid kinase; Reviewed
Probab=48.27 E-value=44 Score=29.24 Aligned_cols=32 Identities=28% Similarity=0.696 Sum_probs=22.6
Q ss_pred cCeEEEecCCCCcHHHHHHHHHHHHhCCCCCceEEE
Q 028138 105 ADAFIALPGGYGTLEELLEVITWAQLGIHRKPVGLL 140 (213)
Q Consensus 105 sDa~IvlpGG~GTL~Ei~~~~~~~~lg~~~kPiill 140 (213)
.| .|+.-||=||++|+...+. +.+ .+.|+.++
T Consensus 57 ~d-~vi~~GGDGTv~evv~gl~--~~~-~~~~lgvi 88 (295)
T PRK13059 57 YK-YILIAGGDGTVDNVVNAMK--KLN-IDLPIGIL 88 (295)
T ss_pred CC-EEEEECCccHHHHHHHHHH--hcC-CCCcEEEE
Confidence 45 6678899999999987763 222 24677777
No 86
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=48.23 E-value=2.5e+02 Score=26.77 Aligned_cols=159 Identities=18% Similarity=0.173 Sum_probs=74.3
Q ss_pred ccCCceEEEEcCCCCCCCHHHHHHHHHHHHHHHHC--CCeEEEcCCCc-------ChhHHHHHHHHhcCCeEEEEeCCCC
Q 028138 5 KSRFKRICVFCGSSSGKKATYQEAAVELGKELVER--KLDLVYGGGSV-------GLMGLVSQAVHDGGRHVLGVIPKTL 75 (213)
Q Consensus 5 ~~~~~~I~V~ggs~~~~~~~~~~~A~~lG~~lA~~--G~~lv~GGg~~-------GlM~a~~~ga~~~gG~viGv~P~~~ 75 (213)
+..++++-..|+-.....+ -.....++-+.|.+. |..+++=|... -...++.++....+-++|=-.....
T Consensus 261 rp~~p~v~~vGgi~~~~~~-~~~l~~~l~~fl~~~~~g~V~vS~GS~~~~~~~~~~~~~~~l~a~~~l~~~viw~~~~~~ 339 (507)
T PHA03392 261 RPVPPSVQYLGGLHLHKKP-PQPLDDYLEEFLNNSTNGVVYVSFGSSIDTNDMDNEFLQMLLRTFKKLPYNVLWKYDGEV 339 (507)
T ss_pred CCCCCCeeeecccccCCCC-CCCCCHHHHHHHhcCCCcEEEEECCCCCcCCCCCHHHHHHHHHHHHhCCCeEEEEECCCc
Confidence 4445566666664321100 001122344455443 56666655421 1345556655555655442222111
Q ss_pred CCCCCCCCCCceeeecCCHHHHHHHHH-HhcCeEEEecCCCCcHHHHHHHHHHHHhCCCCCceEEEecCccchHHHHHHH
Q 028138 76 TPREITGDPVGEVKTVSDMHQRKAEMA-RQADAFIALPGGYGTLEELLEVITWAQLGIHRKPVGLLNVDGFYNSLLSFVD 154 (213)
Q Consensus 76 ~~~e~~~~~~~~~~~~~~~~~R~~~l~-~~sDa~IvlpGG~GTL~Ei~~~~~~~~lg~~~kPiill~~~g~~~~l~~~l~ 154 (213)
.+...+ ..+.+.+-+.. ..+|. ..+++|| -.||.||..|... +++|++++-. ++|.... .+
T Consensus 340 ~~~~~p----~Nv~i~~w~Pq-~~lL~hp~v~~fI-tHGG~~s~~Eal~---------~GvP~v~iP~--~~DQ~~N-a~ 401 (507)
T PHA03392 340 EAINLP----ANVLTQKWFPQ-RAVLKHKNVKAFV-TQGGVQSTDEAID---------ALVPMVGLPM--MGDQFYN-TN 401 (507)
T ss_pred CcccCC----CceEEecCCCH-HHHhcCCCCCEEE-ecCCcccHHHHHH---------cCCCEEECCC--CccHHHH-HH
Confidence 110111 23444454543 33442 2355554 5677899887642 6899998743 5565433 45
Q ss_pred HHHHcCCCCccccCcEEEcCCHHHHHHHHHhh
Q 028138 155 KAVDEGFISPTARRIIISAPTAKKLVRQLEEY 186 (213)
Q Consensus 155 ~~~~~g~i~~~~~~~i~~~~~~ee~~~~l~~~ 186 (213)
.+.+.|.-- ..+.- .-+.+++.+.|.+.
T Consensus 402 rv~~~G~G~--~l~~~--~~t~~~l~~ai~~v 429 (507)
T PHA03392 402 KYVELGIGR--ALDTV--TVSAAQLVLAIVDV 429 (507)
T ss_pred HHHHcCcEE--EeccC--CcCHHHHHHHHHHH
Confidence 565666421 11111 11556666655543
No 87
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=48.15 E-value=1.1e+02 Score=25.98 Aligned_cols=73 Identities=16% Similarity=0.237 Sum_probs=44.2
Q ss_pred HHHHHHHHhcCeEEEec----CCCCcHHHHHHHHHHHHhCCCCCceEEEecCccchHHHHHHHHHHHcCCCCccccCcEE
Q 028138 96 QRKAEMARQADAFIALP----GGYGTLEELLEVITWAQLGIHRKPVGLLNVDGFYNSLLSFVDKAVDEGFISPTARRIII 171 (213)
Q Consensus 96 ~R~~~l~~~sDa~Ivlp----GG~GTL~Ei~~~~~~~~lg~~~kPiill~~~g~~~~l~~~l~~~~~~g~i~~~~~~~i~ 171 (213)
+....+...||++|... .|+|. =+.|++. .++||+.-+..+..+.+.. ......+.
T Consensus 255 ~~~~~~~~~ad~~i~ps~~~~e~~g~--~~~Ea~~------~g~Pvi~~~~~~~~~~i~~------------~~~~g~~~ 314 (357)
T cd03795 255 EEKAALLAACDVFVFPSVERSEAFGI--VLLEAMA------FGKPVISTEIGTGGSYVNL------------HGVTGLVV 314 (357)
T ss_pred HHHHHHHHhCCEEEeCCcccccccch--HHHHHHH------cCCCEEecCCCCchhHHhh------------CCCceEEe
Confidence 34456678899987642 45554 2556664 5799998776544333221 01122344
Q ss_pred EcCCHHHHHHHHHhhcC
Q 028138 172 SAPTAKKLVRQLEEYVP 188 (213)
Q Consensus 172 ~~~~~ee~~~~l~~~~~ 188 (213)
-.+|++++.+.|.+...
T Consensus 315 ~~~d~~~~~~~i~~l~~ 331 (357)
T cd03795 315 PPGDPAALAEAIRRLLE 331 (357)
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 45789999998887644
No 88
>PRK12361 hypothetical protein; Provisional
Probab=47.73 E-value=37 Score=32.51 Aligned_cols=43 Identities=26% Similarity=0.349 Sum_probs=29.4
Q ss_pred HHHHHHHHHHCCC-eEEEcCCCcChhHHHHHHHHhcCCeEEEEeCC
Q 028138 29 AVELGKELVERKL-DLVYGGGSVGLMGLVSQAVHDGGRHVLGVIPK 73 (213)
Q Consensus 29 A~~lG~~lA~~G~-~lv~GGg~~GlM~a~~~ga~~~gG~viGv~P~ 73 (213)
|.++.+..++.|+ .||..||. |--..+..+.... +..+||+|.
T Consensus 286 a~~la~~~~~~~~d~Viv~GGD-GTl~ev~~~l~~~-~~~lgiiP~ 329 (547)
T PRK12361 286 AEALAKQARKAGADIVIACGGD-GTVTEVASELVNT-DITLGIIPL 329 (547)
T ss_pred HHHHHHHHHhcCCCEEEEECCC-cHHHHHHHHHhcC-CCCEEEecC
Confidence 4556666666665 44566675 9888888888754 456999995
No 89
>PLN02958 diacylglycerol kinase/D-erythro-sphingosine kinase
Probab=47.46 E-value=39 Score=32.13 Aligned_cols=44 Identities=23% Similarity=0.387 Sum_probs=30.6
Q ss_pred HHHHHHHHHHCCCe-EEEcCCCcChhHHHHHHHHhcC------CeEEEEeCC
Q 028138 29 AVELGKELVERKLD-LVYGGGSVGLMGLVSQAVHDGG------RHVLGVIPK 73 (213)
Q Consensus 29 A~~lG~~lA~~G~~-lv~GGg~~GlM~a~~~ga~~~g------G~viGv~P~ 73 (213)
|+++.+.+...++. ||.-||. |..-.+..|..... ...+||+|.
T Consensus 157 A~~la~~~~~~~~D~VV~vGGD-GTlnEVvNGL~~~~~~~~~~~~pLGiIPa 207 (481)
T PLN02958 157 AKEVVRTMDLSKYDGIVCVSGD-GILVEVVNGLLEREDWKTAIKLPIGMVPA 207 (481)
T ss_pred HHHHHHHhhhcCCCEEEEEcCC-CHHHHHHHHHhhCccccccccCceEEecC
Confidence 45566666556653 5566675 99999999987542 356999995
No 90
>PF02608 Bmp: Basic membrane protein; InterPro: IPR003760 This is a family of basic membrane lipoproteins from Borrelia and various putative lipoproteins from other bacteria. All of these proteins are outer membrane proteins and are thus antigenic in nature when possessed by the pathogenic members of the family []. The Bacillus subtilis degR, a positive regulator of the production of degradative enzymes, is also a member of this group [].; GO: 0005886 plasma membrane; PDB: 2HQB_A 3S99_A 2FQW_A 2FQY_A 2FQX_A.
Probab=47.26 E-value=33 Score=30.18 Aligned_cols=58 Identities=26% Similarity=0.326 Sum_probs=38.4
Q ss_pred CceEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEcCCCcChhHHHHHHHHhcCCe--EEEEe
Q 028138 8 FKRICVFCGSSSGKKATYQEAAVELGKELVERKLDLVYGGGSVGLMGLVSQAVHDGGRH--VLGVI 71 (213)
Q Consensus 8 ~~~I~V~ggs~~~~~~~~~~~A~~lG~~lA~~G~~lv~GGg~~GlM~a~~~ga~~~gG~--viGv~ 71 (213)
......|-+|-. ||. .++++++.|-.+|..+|+.-.. +.-..+.+.|.+.|.. +||+-
T Consensus 161 i~v~~~~~gs~~--D~~---~~~~~a~~li~~GaDvI~~~ag-~~~~gv~~aa~e~g~~~~~IG~d 220 (306)
T PF02608_consen 161 IKVNVSYTGSFN--DPA---KAKEAAEALIDQGADVIFPVAG-GSGQGVIQAAKEAGVYGYVIGVD 220 (306)
T ss_dssp -EEEEEE-SSSS---HH---HHHHHHHHHHHTT-SEEEEE-C-CCHHHHHHHHHHHTHETEEEEEE
T ss_pred ceEEEEEcCCcC--chH---HHHHHHHHHhhcCCeEEEECCC-CCchHHHHHHHHcCCceEEEEec
Confidence 334455555432 443 5788999999999999998442 5566677888888887 99984
No 91
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=46.75 E-value=96 Score=26.05 Aligned_cols=72 Identities=15% Similarity=0.090 Sum_probs=42.3
Q ss_pred HHHHHHHhcCeEEEecC-----CCCcHHHHHHHHHHHHhCCCCCceEEEecCccchHHHHHHHHHHHcCCCCccccCcEE
Q 028138 97 RKAEMARQADAFIALPG-----GYGTLEELLEVITWAQLGIHRKPVGLLNVDGFYNSLLSFVDKAVDEGFISPTARRIII 171 (213)
Q Consensus 97 R~~~l~~~sDa~IvlpG-----G~GTL~Ei~~~~~~~~lg~~~kPiill~~~g~~~~l~~~l~~~~~~g~i~~~~~~~i~ 171 (213)
...-++..||++|.... |.+.-.=+.|++. .++|||..+..+.-+-+. + .....+.
T Consensus 287 ~~~~~~~~~di~i~~~~~~~~~~~~~p~~~~Ea~~------~G~pvi~~~~~~~~~~~~--------~-----~~~g~~~ 347 (394)
T cd03794 287 ELPELLAAADVGLVPLKPGPAFEGVSPSKLFEYMA------AGKPVLASVDGESAELVE--------E-----AGAGLVV 347 (394)
T ss_pred HHHHHHHhhCeeEEeccCcccccccCchHHHHHHH------CCCcEEEecCCCchhhhc--------c-----CCcceEe
Confidence 34446788999886543 2333334566664 579999887654322211 1 1122334
Q ss_pred EcCCHHHHHHHHHhhc
Q 028138 172 SAPTAKKLVRQLEEYV 187 (213)
Q Consensus 172 ~~~~~ee~~~~l~~~~ 187 (213)
-.+|++++.+.|.+..
T Consensus 348 ~~~~~~~l~~~i~~~~ 363 (394)
T cd03794 348 PPGDPEALAAAILELL 363 (394)
T ss_pred CCCCHHHHHHHHHHHH
Confidence 4458999888888765
No 92
>TIGR00334 5S_RNA_mat_M5 ribonuclease M5. This family of orthologous proteins shows a weak but significant similarity to the central region of the DnaG-type DNA primase. The region of similarity is termed the Toprim (topoisomerase-primase) domain and is also shared by RecR, OLD family nucleases, and type IA and II topoisomerases.
Probab=46.51 E-value=1.7e+02 Score=24.26 Aligned_cols=113 Identities=19% Similarity=0.234 Sum_probs=63.8
Q ss_pred eeeecCCHHHHHHHHHHhcCeEEEecCCCCcHHHHHHHHHHHHhCCCCCceEEE-ecCccchHHHHHHHHHH---HcCCC
Q 028138 87 EVKTVSDMHQRKAEMARQADAFIALPGGYGTLEELLEVITWAQLGIHRKPVGLL-NVDGFYNSLLSFVDKAV---DEGFI 162 (213)
Q Consensus 87 ~~~~~~~~~~R~~~l~~~sDa~IvlpGG~GTL~Ei~~~~~~~~lg~~~kPiill-~~~g~~~~l~~~l~~~~---~~g~i 162 (213)
+++++++=..-.++ -+.-|+-++-.+|++--.|..+.+... ...+.|++| +++.-=+.+..++.+.+ ..-|+
T Consensus 4 evIVVEGK~D~~~l-k~~~d~~~I~T~Gs~i~~~~i~~i~~~---~~~rgVIIfTDpD~~GekIRk~i~~~vp~~khafi 79 (174)
T TIGR00334 4 EIIVVEGKDDQARI-KQAFDVDVIETNGSALKDETINLIKKA---QKKQGVIILTDPDFPGEKIRKKIEQHLPGYENCFI 79 (174)
T ss_pred eEEEEecchHHHHH-HHhcCceEEEECCCccCHHHHHHHHHH---hhcCCEEEEeCCCCchHHHHHHHHHHCCCCeEEee
Confidence 55666665544443 344578788888887434443333211 135777777 45433355666665532 23345
Q ss_pred Ccccc----CcEEE-cCCHHHHHHHHHhhcCCCccccccccccccc
Q 028138 163 SPTAR----RIIIS-APTAKKLVRQLEEYVPEHDEITSKLVWEDRL 203 (213)
Q Consensus 163 ~~~~~----~~i~~-~~~~ee~~~~l~~~~~~~~~~~~~~~w~~~~ 203 (213)
+..+. ..+=+ -.+++++.+.|.+...........++|.|=.
T Consensus 80 ~~~~a~~~~~~iGVE~As~e~I~~AL~~~~~~~~~~~~~it~~dl~ 125 (174)
T TIGR00334 80 PKHLAKPNKKKIGVEEASVEAIIAALENVHEETKAQQSDISWEDLL 125 (174)
T ss_pred eHHhcCcCCCCcccCCCCHHHHHHHHHHhcccccCcccccCHHHHH
Confidence 43322 11222 2359999999999877655555679998543
No 93
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=45.88 E-value=37 Score=29.36 Aligned_cols=37 Identities=16% Similarity=0.211 Sum_probs=26.8
Q ss_pred ceEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCeEEE
Q 028138 9 KRICVFCGSSSGKKATYQEAAVELGKELVERKLDLVY 45 (213)
Q Consensus 9 ~~I~V~ggs~~~~~~~~~~~A~~lG~~lA~~G~~lv~ 45 (213)
++|+|.+|+.......-.+.++++-++|.+.||.++.
T Consensus 5 ~~v~~~~g~~~~~~~~~~~s~~~i~~al~~~g~~v~~ 41 (304)
T PRK01372 5 GKVAVLMGGTSAEREVSLNSGAAVLAALREAGYDAHP 41 (304)
T ss_pred cEEEEEeCCCCCCceEeHHhHHHHHHHHHHCCCEEEE
Confidence 4688887765544333335789999999999999854
No 94
>TIGR00421 ubiX_pad polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases. In E.coli, the protein UbiX (3-octaprenyl-4-hydroxybenzoate carboxy-lyase) has been shown to be involved in the third step of ubiquinone biosynthesis. It catalyzes the reaction [3-octaprenyl-4-hydroxybenzoate = 2-octaprenylphenol + CO2]. The knockout of the homologous protein in yeast confers sensitivity to phenylacrylic acid. Members are not restricted to ubiquinone-synthesizing species. This family represents a distinct clade within the flavoprotein family of Pfam model pfam02441.
Probab=45.46 E-value=43 Score=27.57 Aligned_cols=81 Identities=14% Similarity=0.100 Sum_probs=50.6
Q ss_pred hcCeEEEecCCCCcHHHHHHHHH-----HH--HhCCCCCceEEEecCccchH--HHHHHHHHHHcCCC-CccccCcEEEc
Q 028138 104 QADAFIALPGGYGTLEELLEVIT-----WA--QLGIHRKPVGLLNVDGFYNS--LLSFVDKAVDEGFI-SPTARRIIISA 173 (213)
Q Consensus 104 ~sDa~IvlpGG~GTL~Ei~~~~~-----~~--~lg~~~kPiill~~~g~~~~--l~~~l~~~~~~g~i-~~~~~~~i~~~ 173 (213)
.+|++|+.|=..+|+.-+..=++ .. ..-..++|+++.-. ..|.. -++-++.+.+.|+. =+.....+.--
T Consensus 75 ~aD~~vIaPATantiAkiA~GiaD~Llt~~a~~~L~~~~pv~i~P~-~m~~~~~~~~Nl~~L~~~G~~ii~P~~g~~~~p 153 (181)
T TIGR00421 75 PFDGMVVVPCSMKTLSAIANGYADNLITRAADVCLKERRKLVLVPR-ETPLNSIHLENMLRLSRMGAIILPPMPAFYTRP 153 (181)
T ss_pred hhCEEEEecCCHhHHHHHHcccCCCHHHHHHHHHHhcCCCEEEEeC-CCcCCHHHHHHHHHHHHCCCEEECCCCcccCCC
Confidence 48999999999999988763211 10 01125799998854 45543 23334556666652 23344555666
Q ss_pred CCHHHHHHHHHh
Q 028138 174 PTAKKLVRQLEE 185 (213)
Q Consensus 174 ~~~ee~~~~l~~ 185 (213)
.+++|+++++..
T Consensus 154 ~~~~~~~~~i~~ 165 (181)
T TIGR00421 154 KSVEDMIDFIVG 165 (181)
T ss_pred CCHHHHHHHHHH
Confidence 899997777754
No 95
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=45.26 E-value=88 Score=26.62 Aligned_cols=68 Identities=19% Similarity=0.236 Sum_probs=40.8
Q ss_pred HHHHHhcCeEEEecCCCCcHHHHHHHHHHHHhCCCCCceEEEecCccchHHHHHHHHHHHcCCCCccccCcEEEcCCHHH
Q 028138 99 AEMARQADAFIALPGGYGTLEELLEVITWAQLGIHRKPVGLLNVDGFYNSLLSFVDKAVDEGFISPTARRIIISAPTAKK 178 (213)
Q Consensus 99 ~~l~~~sDa~IvlpGG~GTL~Ei~~~~~~~~lg~~~kPiill~~~g~~~~l~~~l~~~~~~g~i~~~~~~~i~~~~~~ee 178 (213)
..++..||++|.-...-|.-.=++|++. .++|||..+..+. .+.++ + ...++-.+|+++
T Consensus 257 ~~~~~~ad~~v~~s~~e~~~~~~~Ea~a------~G~PvI~~~~~~~----~e~i~---------~--~g~~~~~~~~~~ 315 (360)
T cd04951 257 AAYYNAADLFVLSSAWEGFGLVVAEAMA------CELPVVATDAGGV----REVVG---------D--SGLIVPISDPEA 315 (360)
T ss_pred HHHHHhhceEEecccccCCChHHHHHHH------cCCCEEEecCCCh----hhEec---------C--CceEeCCCCHHH
Confidence 3456889987765432222223666665 4799998765422 11111 1 233556689999
Q ss_pred HHHHHHhhc
Q 028138 179 LVRQLEEYV 187 (213)
Q Consensus 179 ~~~~l~~~~ 187 (213)
+.+.|.+..
T Consensus 316 ~~~~i~~ll 324 (360)
T cd04951 316 LANKIDEIL 324 (360)
T ss_pred HHHHHHHHH
Confidence 999888874
No 96
>KOG3349 consensus Predicted glycosyltransferase [General function prediction only]
Probab=44.98 E-value=60 Score=26.65 Aligned_cols=50 Identities=26% Similarity=0.413 Sum_probs=31.5
Q ss_pred HhcCeEEEecCCCCcHHHHHHHHHHHHhCCCCCceEEEecCc-cchHHHHHHHHHHHcCCC
Q 028138 103 RQADAFIALPGGYGTLEELLEVITWAQLGIHRKPVGLLNVDG-FYNSLLSFVDKAVDEGFI 162 (213)
Q Consensus 103 ~~sDa~IvlpGG~GTL~Ei~~~~~~~~lg~~~kPiill~~~g-~~~~l~~~l~~~~~~g~i 162 (213)
+.||. |+=.+|.||.-|. +. .+||.+++-.+. +-++=.+..+++.++|++
T Consensus 79 ~~Adl-VIsHAGaGS~let---L~------l~KPlivVvNd~LMDNHQ~ELA~qL~~egyL 129 (170)
T KOG3349|consen 79 RSADL-VISHAGAGSCLET---LR------LGKPLIVVVNDSLMDNHQLELAKQLAEEGYL 129 (170)
T ss_pred hhccE-EEecCCcchHHHH---HH------cCCCEEEEeChHhhhhHHHHHHHHHHhcCcE
Confidence 44554 4556889996655 43 368888774443 334445555678888875
No 97
>COG3967 DltE Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane]
Probab=44.54 E-value=29 Score=30.03 Aligned_cols=27 Identities=26% Similarity=0.325 Sum_probs=20.2
Q ss_pred eEEEcCCCcChhHHHHHHHHhcCCeEEE
Q 028138 42 DLVYGGGSVGLMGLVSQAVHDGGRHVLG 69 (213)
Q Consensus 42 ~lv~GGg~~GlM~a~~~ga~~~gG~viG 69 (213)
.|+|||+. |+=.+.++-..+.|..||=
T Consensus 8 iLITGG~s-GIGl~lak~f~elgN~VIi 34 (245)
T COG3967 8 ILITGGAS-GIGLALAKRFLELGNTVII 34 (245)
T ss_pred EEEeCCcc-hhhHHHHHHHHHhCCEEEE
Confidence 45777775 8888888888888877653
No 98
>PRK06756 flavodoxin; Provisional
Probab=44.41 E-value=37 Score=26.27 Aligned_cols=33 Identities=18% Similarity=0.315 Sum_probs=19.4
Q ss_pred CceEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCeE
Q 028138 8 FKRICVFCGSSSGKKATYQEAAVELGKELVERKLDL 43 (213)
Q Consensus 8 ~~~I~V~ggs~~~~~~~~~~~A~~lG~~lA~~G~~l 43 (213)
|++|.|+.+|..++.. +.|+.+++.+.+.|+.+
T Consensus 1 mmkv~IiY~S~tGnTe---~vA~~ia~~l~~~g~~v 33 (148)
T PRK06756 1 MSKLVMIFASMSGNTE---EMADHIAGVIRETENEI 33 (148)
T ss_pred CceEEEEEECCCchHH---HHHHHHHHHHhhcCCeE
Confidence 3467777677666333 24566666666666543
No 99
>PF09152 DUF1937: Domain of unknown function (DUF1937); InterPro: IPR015235 This entry is represented by Bacteriophage N15, Gp57. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry represents a set of hypothetical bacterial and phage proteins whose exact function has not, as yet, been described. ; PDB: 1T1J_A.
Probab=44.40 E-value=23 Score=27.45 Aligned_cols=38 Identities=21% Similarity=0.247 Sum_probs=25.7
Q ss_pred HHHHHHHhcCeEEEec--C---CCCcHHHHHHHHHHHHhCCCCCceEEE
Q 028138 97 RKAEMARQADAFIALP--G---GYGTLEELLEVITWAQLGIHRKPVGLL 140 (213)
Q Consensus 97 R~~~l~~~sDa~Ivlp--G---G~GTL~Ei~~~~~~~~lg~~~kPiill 140 (213)
=.+.|++.||++|++. | ..|+.-|+-.+.+ +++||.++
T Consensus 72 ~d~~~L~~c~~lvV~~i~GW~~S~Gi~~Ei~~a~~------~~~~V~~~ 114 (116)
T PF09152_consen 72 WDRPFLDACDELVVLDIPGWDDSEGIWAEIEAAEE------MGMPVFLY 114 (116)
T ss_dssp HHHHHHHH-SEEEE---TTGGG-HHHHHHHHHHHH------TT-EEEEH
T ss_pred HhHHHHHhcceeEEecCCCccccccHHHHHHHHHH------cCCeEEEe
Confidence 3455789999999986 4 3699999988876 57898875
No 100
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=44.06 E-value=66 Score=26.61 Aligned_cols=69 Identities=20% Similarity=0.343 Sum_probs=38.9
Q ss_pred HHHHHHhcCeEEEec--CCCCcHHHHHHHHHHHHhCCCCCceEEEecCccchHHHHHHHHHHHcCCCCccccCcEEEcCC
Q 028138 98 KAEMARQADAFIALP--GGYGTLEELLEVITWAQLGIHRKPVGLLNVDGFYNSLLSFVDKAVDEGFISPTARRIIISAPT 175 (213)
Q Consensus 98 ~~~l~~~sDa~Ivlp--GG~GTL~Ei~~~~~~~~lg~~~kPiill~~~g~~~~l~~~l~~~~~~g~i~~~~~~~i~~~~~ 175 (213)
...++..||++|... .|.|+ =++|++. .++|||..+..++- . +++ ......+.-.+|
T Consensus 269 ~~~~~~~~di~i~~~~~~~~~~--~~~Ea~~------~g~pvI~~~~~~~~-~---~~~---------~~~~g~~~~~~~ 327 (374)
T cd03801 269 LPALYAAADVFVLPSLYEGFGL--VLLEAMA------AGLPVVASDVGGIP-E---VVE---------DGETGLLVPPGD 327 (374)
T ss_pred HHHHHHhcCEEEecchhccccc--hHHHHHH------cCCcEEEeCCCChh-H---Hhc---------CCcceEEeCCCC
Confidence 344567899877543 23332 2455554 47999988764332 2 111 112233444556
Q ss_pred HHHHHHHHHhhc
Q 028138 176 AKKLVRQLEEYV 187 (213)
Q Consensus 176 ~ee~~~~l~~~~ 187 (213)
++++.+.|.+..
T Consensus 328 ~~~l~~~i~~~~ 339 (374)
T cd03801 328 PEALAEAILRLL 339 (374)
T ss_pred HHHHHHHHHHHH
Confidence 899988888753
No 101
>COG0716 FldA Flavodoxins [Energy production and conversion]
Probab=43.93 E-value=34 Score=26.83 Aligned_cols=34 Identities=21% Similarity=0.342 Sum_probs=26.0
Q ss_pred CceEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCeEE
Q 028138 8 FKRICVFCGSSSGKKATYQEAAVELGKELVERKLDLV 44 (213)
Q Consensus 8 ~~~I~V~ggs~~~~~~~~~~~A~~lG~~lA~~G~~lv 44 (213)
|++|+||-+|..++... .|+.+...|...|+.+.
T Consensus 1 M~ki~Ivy~S~tGnTe~---vA~~i~~~l~~~~~~~~ 34 (151)
T COG0716 1 MMKILIVYGSRTGNTEK---VAEIIAEELGADGFEVD 34 (151)
T ss_pred CCeEEEEEEcCCCcHHH---HHHHHHHHhccCCceEE
Confidence 57899999999884332 57888888888887773
No 102
>TIGR02153 gatD_arch glutamyl-tRNA(Gln) amidotransferase, subunit D. This peptide is found only in the Archaea. It is part of a heterodimer, with GatE (TIGR00134), that acts as an amidotransferase on misacylated Glu-tRNA(Gln) to produce Gln-tRNA(Gln). The analogous amidotransferase found in bacteria is the GatABC system, although GatABC homologs in the Archaea appear to act instead on Asp-tRNA(Asn).
Probab=43.79 E-value=59 Score=30.38 Aligned_cols=49 Identities=16% Similarity=0.185 Sum_probs=34.3
Q ss_pred cCeEEEecCCCCcHHHHHHHHHHHHhCCCCCceEEEecC-----ccchHHHHHHHH
Q 028138 105 ADAFIALPGGYGTLEELLEVITWAQLGIHRKPVGLLNVD-----GFYNSLLSFVDK 155 (213)
Q Consensus 105 sDa~IvlpGG~GTL~Ei~~~~~~~~lg~~~kPiill~~~-----g~~~~l~~~l~~ 155 (213)
.|+|||..| .-||+|-..++.++--+ .+|||||.+.- --.|...++++.
T Consensus 140 ~dGvVVtHG-TDTM~yTA~aLs~~l~~-~~kPVVlTGAqrp~~~~~sDa~~NL~~A 193 (404)
T TIGR02153 140 ADGVVVAHG-TDTMAYTAAALSFMFET-LPVPVVLVGAQRSSDRPSSDAALNLICA 193 (404)
T ss_pred CCcEEEecC-ChhHHHHHHHHHHHhhC-CCCCEEEECCCCCCCCCCchHHHHHHHH
Confidence 689999886 79999999988764322 37999998642 133555555543
No 103
>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=43.68 E-value=1.2e+02 Score=26.98 Aligned_cols=29 Identities=24% Similarity=0.338 Sum_probs=17.3
Q ss_pred CCeEEEcCCCcChhHHHHHHHHhcCCeEEEE
Q 028138 40 KLDLVYGGGSVGLMGLVSQAVHDGGRHVLGV 70 (213)
Q Consensus 40 G~~lv~GGg~~GlM~a~~~ga~~~gG~viGv 70 (213)
...++ -||. |-+-.+++.....+-.++||
T Consensus 59 d~vi~-~GGD-GT~l~~~~~~~~~~~pv~gi 87 (305)
T PRK02645 59 DLAIV-LGGD-GTVLAAARHLAPHDIPILSV 87 (305)
T ss_pred CEEEE-ECCc-HHHHHHHHHhccCCCCEEEE
Confidence 34444 4565 88877777766555455544
No 104
>PF13692 Glyco_trans_1_4: Glycosyl transferases group 1; PDB: 3OY2_A 3OY7_B 2Q6V_A 2HY7_A 3CV3_A 3CUY_A.
Probab=43.36 E-value=81 Score=23.11 Aligned_cols=68 Identities=21% Similarity=0.243 Sum_probs=35.9
Q ss_pred HHHHHHhcCeEEEec-CCCCcHHHHHHHHHHHHhCCCCCceEEEecCccchHHHHHHHHHHHcCCCCccccCcEEEcCCH
Q 028138 98 KAEMARQADAFIALP-GGYGTLEELLEVITWAQLGIHRKPVGLLNVDGFYNSLLSFVDKAVDEGFISPTARRIIISAPTA 176 (213)
Q Consensus 98 ~~~l~~~sDa~Ivlp-GG~GTL~Ei~~~~~~~~lg~~~kPiill~~~g~~~~l~~~l~~~~~~g~i~~~~~~~i~~~~~~ 176 (213)
..-++..+|+.|..- =+.++-.-+++++. .++||+..+. + +..+ ....... +.+.+|+
T Consensus 64 ~~~~l~~~dv~l~p~~~~~~~~~k~~e~~~------~G~pvi~~~~-~-~~~~------------~~~~~~~-~~~~~~~ 122 (135)
T PF13692_consen 64 LPEILAAADVGLIPSRFNEGFPNKLLEAMA------AGKPVIASDN-G-AEGI------------VEEDGCG-VLVANDP 122 (135)
T ss_dssp HHHHHHC-SEEEE-BSS-SCC-HHHHHHHC------TT--EEEEHH-H-CHCH------------S---SEE-EE-TT-H
T ss_pred HHHHHHhCCEEEEEeeCCCcCcHHHHHHHH------hCCCEEECCc-c-hhhh------------eeecCCe-EEECCCH
Confidence 444567789877632 13356666777663 6799998764 2 2221 1111223 3449999
Q ss_pred HHHHHHHHhh
Q 028138 177 KKLVRQLEEY 186 (213)
Q Consensus 177 ee~~~~l~~~ 186 (213)
+++.+.|.+.
T Consensus 123 ~~l~~~i~~l 132 (135)
T PF13692_consen 123 EELAEAIERL 132 (135)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999999875
No 105
>PF05159 Capsule_synth: Capsule polysaccharide biosynthesis protein; InterPro: IPR007833 This family includes export proteins involved in capsule polysaccharide biosynthesis, such as KpsS P42218 from SWISSPROT and LipB P57038 from SWISSPROT. Capsule polysaccharide modification protein lipB/A is involved in the phospholipid modification of the capsular polysaccharide and is a strong requirement for its translocation to the cell surface. The capsule of Neisseria meningitidis serogroup B and of other meningococcal serogroups and other Gram-negative bacterial pathogens, are anchored in the outer membrane through a 1,2-diacylglycerol moiety. The lipA and lipB genes are located on the 3' end of the ctr operon. lipA and lipB do not encode proteins responsible for diacylglycerophosphatidic acid substitution of the meningococcal capsule polymer, but they are required for proper translocation and surface expression of the lipidated polymer []. KpsS is an unusual sulphate-modified form of the capsular polysaccharide in Rhizobium loti (Mesorhizobium loti). Many plants, including R. loti, enter into symbiotic relationships with bacteria that allow survival in nutrient-limiting environments. KpsS functions as a fucosyl sulphotransferase in vitro. The kpsS gene product shares no significant amino acid similarity with previously identified sulphotransferases []. Sulphated cell surface polysaccharides are required for optimum nodule formation but limit growth rate and nodule colonisation in M. loti [].; GO: 0000271 polysaccharide biosynthetic process, 0015774 polysaccharide transport
Probab=43.24 E-value=21 Score=30.67 Aligned_cols=37 Identities=32% Similarity=0.563 Sum_probs=28.3
Q ss_pred HHHHhcCeEEEecCCCCcHHHHHHHHHHHHhCCCCCceEEEecCccchH
Q 028138 100 EMARQADAFIALPGGYGTLEELLEVITWAQLGIHRKPVGLLNVDGFYNS 148 (213)
Q Consensus 100 ~l~~~sDa~IvlpGG~GTL~Ei~~~~~~~~lg~~~kPiill~~~g~~~~ 148 (213)
-+++.||++|.+-+.+|= |++- ++|||++++.. ||+.
T Consensus 195 ~Ll~~s~~VvtinStvGl-----EAll------~gkpVi~~G~~-~Y~~ 231 (269)
T PF05159_consen 195 ELLEQSDAVVTINSTVGL-----EALL------HGKPVIVFGRA-FYAG 231 (269)
T ss_pred HHHHhCCEEEEECCHHHH-----HHHH------cCCceEEecCc-ccCC
Confidence 568999999999988774 4442 58999999753 6654
No 106
>TIGR03702 lip_kinase_YegS lipid kinase YegS. Members of this protein family are designated YegS, an apparent lipid kinase family in the Proteobacteria. Bakali, et al. report phosphatidylglycerol kinase activity for the member from Escherichia coli, but refrain from calling that activity synonymous with its biological role. Note that a broader, subfamily-type model (TIGR00147), includes this family but also multiple paralogs in some species and varied functions.
Probab=43.23 E-value=1.4e+02 Score=25.99 Aligned_cols=31 Identities=32% Similarity=0.476 Sum_probs=22.0
Q ss_pred EEEecCCCCcHHHHHHHHHHHHhCC-CCCceEEE
Q 028138 108 FIALPGGYGTLEELLEVITWAQLGI-HRKPVGLL 140 (213)
Q Consensus 108 ~IvlpGG~GTL~Ei~~~~~~~~lg~-~~kPiill 140 (213)
+|+.-||=||++|+...+. +.+. .+.|+.++
T Consensus 55 ~vv~~GGDGTi~ev~ngl~--~~~~~~~~~lgii 86 (293)
T TIGR03702 55 TVIAGGGDGTLREVATALA--QIRDDAAPALGLL 86 (293)
T ss_pred EEEEEcCChHHHHHHHHHH--hhCCCCCCcEEEE
Confidence 6778899999999997773 2221 23577777
No 107
>PRK00208 thiG thiazole synthase; Reviewed
Probab=43.19 E-value=2.3e+02 Score=24.86 Aligned_cols=102 Identities=13% Similarity=0.201 Sum_probs=59.2
Q ss_pred ceEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCeEE-EcCCCcChhHHHHHHHHhcCCeEEEEeCCCCCCCCCCCCCCce
Q 028138 9 KRICVFCGSSSGKKATYQEAAVELGKELVERKLDLV-YGGGSVGLMGLVSQAVHDGGRHVLGVIPKTLTPREITGDPVGE 87 (213)
Q Consensus 9 ~~I~V~ggs~~~~~~~~~~~A~~lG~~lA~~G~~lv-~GGg~~GlM~a~~~ga~~~gG~viGv~P~~~~~~e~~~~~~~~ 87 (213)
-++=|++..... -|+-. ..-+-.+.|.+.|+.++ |-.-. +. .++...+.|-..+ .|-. .+.. .+ .
T Consensus 94 iKlEVi~d~~~l-lpd~~-~tv~aa~~L~~~Gf~vlpyc~~d--~~--~ak~l~~~G~~~v--mPlg-~pIG--sg-~-- 159 (250)
T PRK00208 94 IKLEVIGDDKTL-LPDPI-ETLKAAEILVKEGFVVLPYCTDD--PV--LAKRLEEAGCAAV--MPLG-APIG--SG-L-- 159 (250)
T ss_pred EEEEEecCCCCC-CcCHH-HHHHHHHHHHHCCCEEEEEeCCC--HH--HHHHHHHcCCCEe--CCCC-cCCC--CC-C--
Confidence 356677554432 23222 23456677788999998 75433 33 3344455566555 3311 1111 11 0
Q ss_pred eeecCCHHHHHHHHHHhcCeEEEecCCCCcHHHHHHHHHH
Q 028138 88 VKTVSDMHQRKAEMARQADAFIALPGGYGTLEELLEVITW 127 (213)
Q Consensus 88 ~~~~~~~~~R~~~l~~~sDa~IvlpGG~GTL~Ei~~~~~~ 127 (213)
-..+ .+..+.+.+..+.-|+..||++|.+++..++.+
T Consensus 160 --gi~~-~~~i~~i~e~~~vpVIveaGI~tpeda~~Amel 196 (250)
T PRK00208 160 --GLLN-PYNLRIIIEQADVPVIVDAGIGTPSDAAQAMEL 196 (250)
T ss_pred --CCCC-HHHHHHHHHhcCCeEEEeCCCCCHHHHHHHHHc
Confidence 0111 344666667778999999999999999998853
No 108
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=43.17 E-value=66 Score=30.05 Aligned_cols=83 Identities=25% Similarity=0.436 Sum_probs=48.6
Q ss_pred CeEEEcCCCcChhHHHHHHHHh--------------------cCCeEEEEeCCCCCCCCCCCCCCceeeecCCHHHHHHH
Q 028138 41 LDLVYGGGSVGLMGLVSQAVHD--------------------GGRHVLGVIPKTLTPREITGDPVGEVKTVSDMHQRKAE 100 (213)
Q Consensus 41 ~~lv~GGg~~GlM~a~~~ga~~--------------------~gG~viGv~P~~~~~~e~~~~~~~~~~~~~~~~~R~~~ 100 (213)
|.|-+|-|| |+.+-..+-+.+ .+|++.||--+.+.|.....-....-.+..+
T Consensus 141 FHiTWGTGP-gvl~pFvr~~re~~~~~~v~f~~RHrV~~l~~t~grvtGv~GdVLeps~v~RG~~SSR~~~Gd------- 212 (552)
T COG3573 141 FHITWGTGP-GVLEPFVRRLREAQRRGRVTFRFRHRVDGLTTTGGRVTGVRGDVLEPSDVERGQPSSREVVGD------- 212 (552)
T ss_pred eEEeecCCc-chhhHHHHHHHHHHhCCceEEEeeeeccceEeeCCeEeeecccccCCCccccCCCccceeecc-------
Confidence 567899998 999887777666 2456667643333222111111111111122
Q ss_pred HHHhcCeEEEecCCCCcHHHHH-HHHHHHHhC
Q 028138 101 MARQADAFIALPGGYGTLEELL-EVITWAQLG 131 (213)
Q Consensus 101 l~~~sDa~IvlpGG~GTL~Ei~-~~~~~~~lg 131 (213)
+.-++.++||-.||+|--.|+. ..|--..+|
T Consensus 213 Fef~A~aviv~SGGIGGnhelVRrnWP~eRlG 244 (552)
T COG3573 213 FEFSASAVIVASGGIGGNHELVRRNWPTERLG 244 (552)
T ss_pred eEEeeeeEEEecCCcCCCHHHHHhcCchhhcC
Confidence 2345789999999999988886 445444555
No 109
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=43.11 E-value=1.4e+02 Score=26.51 Aligned_cols=32 Identities=19% Similarity=0.201 Sum_probs=22.2
Q ss_pred CCceEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCC
Q 028138 7 RFKRICVFCGSSSGKKATYQEAAVELGKELVERKL 41 (213)
Q Consensus 7 ~~~~I~V~ggs~~~~~~~~~~~A~~lG~~lA~~G~ 41 (213)
.+++|+|+.- . .++...+.+.++.++|.++|+
T Consensus 4 ~~~~i~ii~~--~-~~~~~~~~~~~l~~~L~~~g~ 35 (296)
T PRK04539 4 PFHNIGIVTR--P-NTPDIQDTAHTLITFLKQHGF 35 (296)
T ss_pred CCCEEEEEec--C-CCHHHHHHHHHHHHHHHHCCC
Confidence 3678999932 2 256666788888888866654
No 110
>PRK06703 flavodoxin; Provisional
Probab=43.03 E-value=68 Score=24.85 Aligned_cols=14 Identities=7% Similarity=0.285 Sum_probs=6.7
Q ss_pred HHHHHHhcCCeEEE
Q 028138 56 VSQAVHDGGRHVLG 69 (213)
Q Consensus 56 ~~~ga~~~gG~viG 69 (213)
+.+-..+.|..+++
T Consensus 105 l~~~l~~~G~~~~~ 118 (151)
T PRK06703 105 FEERLVERGAELVQ 118 (151)
T ss_pred HHHHHHHCCCEEcc
Confidence 33333445665554
No 111
>PRK04183 glutamyl-tRNA(Gln) amidotransferase subunit D; Validated
Probab=42.92 E-value=64 Score=30.30 Aligned_cols=48 Identities=10% Similarity=0.198 Sum_probs=35.4
Q ss_pred cCeEEEecCCCCcHHHHHHHHHHHHhCCCCCceEEEecC-----ccchHHHHHHHH
Q 028138 105 ADAFIALPGGYGTLEELLEVITWAQLGIHRKPVGLLNVD-----GFYNSLLSFVDK 155 (213)
Q Consensus 105 sDa~IvlpGG~GTL~Ei~~~~~~~~lg~~~kPiill~~~-----g~~~~l~~~l~~ 155 (213)
.|+|||..| .-||+|-..++.++- ..+|||||.+.- -..|...+++..
T Consensus 153 ~dGvVVtHG-TDTM~yTA~aLs~~l--~~~kPVVlTGAqrp~~~~~sDa~~NL~~A 205 (419)
T PRK04183 153 ADGVVVAHG-TDTMHYTAAALSFML--KTPVPIVFVGAQRSSDRPSSDAAMNLICA 205 (419)
T ss_pred CCeEEEecC-CchHHHHHHHHHHhc--CCCCCEEEeCCCCCCCCCCchHHHHHHHH
Confidence 799999985 799999999998754 358999998642 144556665544
No 112
>PRK06029 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Provisional
Probab=42.88 E-value=46 Score=27.62 Aligned_cols=81 Identities=17% Similarity=0.106 Sum_probs=53.7
Q ss_pred hcCeEEEecCCCCcHHHHHHHHHH-------HHhCCCCCceEEEecCccchH--HHHHHHHHHHcCCC-CccccCcEEEc
Q 028138 104 QADAFIALPGGYGTLEELLEVITW-------AQLGIHRKPVGLLNVDGFYNS--LLSFVDKAVDEGFI-SPTARRIIISA 173 (213)
Q Consensus 104 ~sDa~IvlpGG~GTL~Ei~~~~~~-------~~lg~~~kPiill~~~g~~~~--l~~~l~~~~~~g~i-~~~~~~~i~~~ 173 (213)
.+|++|+.|=..+|+.-+..=++- ...-..++|+++.-. .+|.. ..+.++++.+.|+. =+.....+.--
T Consensus 78 ~aD~~vIaPaTaNtlAKiA~GiaDnLlt~~a~~~L~~~~pvii~P~-~M~~~p~~~~Nl~~L~~~G~~vi~P~~g~~a~p 156 (185)
T PRK06029 78 GTDGMVIAPCSMKTLAKIAHGYSDNLITRAADVMLKERRRLVLCVR-ETPLHLGHLRNMTKLAEMGAIIMPPVPAFYHRP 156 (185)
T ss_pred hhCEEEEeeCCHhHHHHHHccccCcHHHHHHHHHHhcCCCEEEEec-cccCCHHHHHHHHHHHHCcCEEECCCcccccCC
Confidence 479999999999999877532210 011125799998864 58853 34456667777763 33444556666
Q ss_pred CCHHHHHHHHHh
Q 028138 174 PTAKKLVRQLEE 185 (213)
Q Consensus 174 ~~~ee~~~~l~~ 185 (213)
.+.+|+++++..
T Consensus 157 ~~~~~~~~~~v~ 168 (185)
T PRK06029 157 QTLEDMVDQTVG 168 (185)
T ss_pred CCHHHHHHHHHH
Confidence 899999998754
No 113
>PRK09461 ansA cytoplasmic asparaginase I; Provisional
Probab=42.70 E-value=64 Score=29.16 Aligned_cols=51 Identities=16% Similarity=0.167 Sum_probs=35.4
Q ss_pred HhcCeEEEecCCCCcHHHHHHHHHHHHhCCCCCceEEEecC-----ccchHHHHHHHH
Q 028138 103 RQADAFIALPGGYGTLEELLEVITWAQLGIHRKPVGLLNVD-----GFYNSLLSFVDK 155 (213)
Q Consensus 103 ~~sDa~IvlpGG~GTL~Ei~~~~~~~~lg~~~kPiill~~~-----g~~~~l~~~l~~ 155 (213)
...|+|||..| .-||+|-...+.++-. ..+||||+-+.- --.|...++.+.
T Consensus 80 ~~~dG~VVtHG-TDTmeeTA~~L~~~l~-~~~kPVVlTGAmrP~~~~~sDg~~NL~~A 135 (335)
T PRK09461 80 DDYDGFVILHG-TDTMAYTASALSFMLE-NLGKPVIVTGSQIPLAELRSDGQTNLLNA 135 (335)
T ss_pred ccCCeEEEeec-cchHHHHHHHHHHHHh-CCCCCEEEeCCCCCCCCCCchHHHHHHHH
Confidence 45799999985 7999999988876432 237999997541 234555555544
No 114
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=42.67 E-value=42 Score=27.94 Aligned_cols=36 Identities=19% Similarity=0.332 Sum_probs=27.0
Q ss_pred CceEEEEcCCCCCC-CHHHHHHHHHHHHHHHHCCCeE
Q 028138 8 FKRICVFCGSSSGK-KATYQEAAVELGKELVERKLDL 43 (213)
Q Consensus 8 ~~~I~V~ggs~~~~-~~~~~~~A~~lG~~lA~~G~~l 43 (213)
|++|+|+|.-..+. -=-++..+++|+..|+++|+.+
T Consensus 1 mkkIaIiGtrGIPa~YGGfET~ve~L~~~l~~~g~~v 37 (185)
T PF09314_consen 1 MKKIAIIGTRGIPARYGGFETFVEELAPRLVSKGIDV 37 (185)
T ss_pred CceEEEEeCCCCCcccCcHHHHHHHHHHHHhcCCceE
Confidence 67899995433322 2367889999999999999975
No 115
>PRK06443 chorismate mutase; Validated
Probab=42.61 E-value=43 Score=27.84 Aligned_cols=42 Identities=17% Similarity=0.272 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHCCCeEEEcCCCcChhHHHHHHHHhcCCeEEE
Q 028138 24 TYQEAAVELGKELVERKLDLVYGGGSVGLMGLVSQAVHDGGRHVLG 69 (213)
Q Consensus 24 ~~~~~A~~lG~~lA~~G~~lv~GGg~~GlM~a~~~ga~~~gG~viG 69 (213)
.|..+|+.||..+...||.++- . -.....-.|+..+||+++-
T Consensus 91 ~y~~~~~sl~~~~~~~g~~v~i---~-~~~~~~~~~~~~~~~~~~~ 132 (177)
T PRK06443 91 DYDSLILSLGLILSRPGIEIYI---E-DNPDSIEEGCSKAGGHVVI 132 (177)
T ss_pred chHHHHHHHHHHHhcCCcEEEe---c-cCchHHHHhhhhcCCeEec
Confidence 5888999999999999999763 2 3678888899999998753
No 116
>PF01320 Colicin_Pyocin: Colicin immunity protein / pyocin immunity protein; InterPro: IPR023802 Bacterial colicin and pyocin immunity proteins [, ] can bind specifically to the DNase-type colicins and pyocins and inhibit their bactericidal activity. The 1.8-angstrom crystal structure of the ImmE7 protein consists of four antiparallel alpha-helices []. Sequence similarities between colicins E2, A and E1 [] are less striking. The colicin E2 (pyocin) immunity protein does not share similarity with either the colicin E3 or cloacin DF13 [] immunity proteins. Pyocin protects a cell that harbours the plasmid ColE2 encoding colicin E2 against colicin E2; it is thus essential both for autonomous replication and colicin E2 immunity []. This entry represents the structural domain of colicin and pyocin immunity proteins.; GO: 0015643 toxin binding, 0030153 bacteriocin immunity; PDB: 1GXH_A 1GXG_A 1MZ8_C 2ERH_A 1ZNV_C 1AYI_A 1UNK_A 2JBG_A 7CEI_A 1CEI_A ....
Probab=42.59 E-value=24 Score=25.83 Aligned_cols=53 Identities=15% Similarity=0.325 Sum_probs=34.3
Q ss_pred EecCccchHHHHHHHHHHHcCCCCccccCcEEEc-----CCHHHHHHHHHhhcCCCcccccc
Q 028138 140 LNVDGFYNSLLSFVDKAVDEGFISPTARRIIISA-----PTAKKLVRQLEEYVPEHDEITSK 196 (213)
Q Consensus 140 l~~~g~~~~l~~~l~~~~~~g~i~~~~~~~i~~~-----~~~ee~~~~l~~~~~~~~~~~~~ 196 (213)
+.++.+.+.++..+.++++. +.-.++|++- ++|+.+++.++++....+.+.|+
T Consensus 27 ~~~ee~~d~lv~hF~~iteH----P~gSDLIfYP~~~~edsPegIv~~vKeWRa~nG~pgFK 84 (85)
T PF01320_consen 27 LKTEEEHDELVDHFEKITEH----PDGSDLIFYPEDGREDSPEGIVKEVKEWRASNGKPGFK 84 (85)
T ss_dssp SSSCHHHHHHHHHHHHHH------TTTTHHHHS-STTSTSSHHHHHHHHHHHHHHTT---SB
T ss_pred CCCHHHHHHHHHHHHHcCCC----CCCCceeeeCCCCCCCCHHHHHHHHHHHHHHcCCCccC
Confidence 33455778888877776643 4445666553 58999999999998887666554
No 117
>TIGR00642 mmCoA_mut_beta methylmalonyl-CoA mutase, heterodimeric type, beta chain. The adenosylcobalamin-binding, catalytic chain of methylmalonyl-CoA mutase may form homodimers, as in mitochondrion and E. coli, or heterodimers with a shorter, homologous chain that does not bind adenosylcobalamin. This model describes this non-catalytic beta chain, as found in the enzyme from Propionibacterium freudenreichii, for which the 3-dimensional structure has been solved.
Probab=42.44 E-value=42 Score=33.12 Aligned_cols=44 Identities=23% Similarity=0.396 Sum_probs=30.9
Q ss_pred CceEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEcCCCcChhHH
Q 028138 8 FKRICVFCGSSSGKKATYQEAAVELGKELVERKLDLVYGGGSVGLMGL 55 (213)
Q Consensus 8 ~~~I~V~ggs~~~~~~~~~~~A~~lG~~lA~~G~~lv~GGg~~GlM~a 55 (213)
-..|+|+||| |+.|.+.|..+.+.|.+.|...|+=+|..+-|+.
T Consensus 546 ga~i~viCss----D~~Y~~~a~~~~~al~~ag~~~v~lAG~p~~~~~ 589 (619)
T TIGR00642 546 GAQVAVLCSS----DKVYAQQGLEVAKALKAAGAKALYLAGAFKEFGD 589 (619)
T ss_pred CCCEEEEeCC----CcchHHHHHHHHHHHHhCCCCEEEEeCCCcchhh
Confidence 3469999998 6789999999999996666544433333355543
No 118
>PRK13057 putative lipid kinase; Reviewed
Probab=42.22 E-value=58 Score=28.26 Aligned_cols=32 Identities=28% Similarity=0.506 Sum_probs=23.0
Q ss_pred hcCeEEEecCCCCcHHHHHHHHHHHHhCCCCCceEEEe
Q 028138 104 QADAFIALPGGYGTLEELLEVITWAQLGIHRKPVGLLN 141 (213)
Q Consensus 104 ~sDa~IvlpGG~GTL~Ei~~~~~~~~lg~~~kPiill~ 141 (213)
..| .|+.-||=||++|+...+. ..+.|+.++-
T Consensus 50 ~~d-~iiv~GGDGTv~~v~~~l~-----~~~~~lgiiP 81 (287)
T PRK13057 50 GVD-LVIVGGGDGTLNAAAPALV-----ETGLPLGILP 81 (287)
T ss_pred CCC-EEEEECchHHHHHHHHHHh-----cCCCcEEEEC
Confidence 345 5667899999999987763 1357887773
No 119
>PRK08887 nicotinic acid mononucleotide adenylyltransferase; Provisional
Probab=42.19 E-value=34 Score=27.82 Aligned_cols=24 Identities=17% Similarity=0.178 Sum_probs=17.4
Q ss_pred CceEEEEcCCCCCCCHHHHHHHHH
Q 028138 8 FKRICVFCGSSSGKKATYQEAAVE 31 (213)
Q Consensus 8 ~~~I~V~ggs~~~~~~~~~~~A~~ 31 (213)
|++|||||||=....--+...|++
T Consensus 1 m~~i~ifGGSFDP~H~GHl~ia~~ 24 (174)
T PRK08887 1 MKKIAVFGSAFNPPSLGHKSVIES 24 (174)
T ss_pred CCeEEEeCCCCCCCCHHHHHHHHH
Confidence 457999999977666666655554
No 120
>PRK13337 putative lipid kinase; Reviewed
Probab=41.58 E-value=1.4e+02 Score=26.03 Aligned_cols=30 Identities=30% Similarity=0.608 Sum_probs=21.4
Q ss_pred EEEecCCCCcHHHHHHHHHHHHhCCCCCceEEE
Q 028138 108 FIALPGGYGTLEELLEVITWAQLGIHRKPVGLL 140 (213)
Q Consensus 108 ~IvlpGG~GTL~Ei~~~~~~~~lg~~~kPiill 140 (213)
.|+.-||=||++|+...+. +.+ ...|+.++
T Consensus 60 ~vvv~GGDGTl~~vv~gl~--~~~-~~~~lgii 89 (304)
T PRK13337 60 LVIAAGGDGTLNEVVNGIA--EKE-NRPKLGII 89 (304)
T ss_pred EEEEEcCCCHHHHHHHHHh--hCC-CCCcEEEE
Confidence 6778899999999997763 211 23577777
No 121
>PRK00861 putative lipid kinase; Reviewed
Probab=41.43 E-value=58 Score=28.41 Aligned_cols=28 Identities=29% Similarity=0.532 Sum_probs=20.8
Q ss_pred EEEecCCCCcHHHHHHHHHHHHhCCCCCceEEE
Q 028138 108 FIALPGGYGTLEELLEVITWAQLGIHRKPVGLL 140 (213)
Q Consensus 108 ~IvlpGG~GTL~Ei~~~~~~~~lg~~~kPiill 140 (213)
+|+.-||=||++|+...+. ..+.|+.++
T Consensus 60 ~vv~~GGDGTl~evv~~l~-----~~~~~lgvi 87 (300)
T PRK00861 60 LIIASGGDGTLSAVAGALI-----GTDIPLGII 87 (300)
T ss_pred EEEEECChHHHHHHHHHHh-----cCCCcEEEE
Confidence 4667899999999987763 134677777
No 122
>PRK14572 D-alanyl-alanine synthetase A; Provisional
Probab=41.38 E-value=52 Score=29.51 Aligned_cols=39 Identities=18% Similarity=0.129 Sum_probs=30.0
Q ss_pred CceEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEc
Q 028138 8 FKRICVFCGSSSGKKATYQEAAVELGKELVERKLDLVYG 46 (213)
Q Consensus 8 ~~~I~V~ggs~~~~~~~~~~~A~~lG~~lA~~G~~lv~G 46 (213)
|.+|+|++|......+.=...|+.+.+.|-+.||.++--
T Consensus 1 ~~~i~vl~GG~S~E~~vSl~s~~~v~~~l~~~~~~v~~i 39 (347)
T PRK14572 1 MAKIAVFFGGSSTEHSISIRTGCFICATLHTMGHSVKPI 39 (347)
T ss_pred CcEEEEEECCCCcchHHHHHhHHHHHHHHhhcCCEEEEE
Confidence 347888877766556665678999999999999998643
No 123
>PF14359 DUF4406: Domain of unknown function (DUF4406)
Probab=41.20 E-value=85 Score=22.96 Aligned_cols=31 Identities=26% Similarity=0.162 Sum_probs=24.4
Q ss_pred HHHHHHHHhcCeEEEecCC---CCcHHHHHHHHH
Q 028138 96 QRKAEMARQADAFIALPGG---YGTLEELLEVIT 126 (213)
Q Consensus 96 ~R~~~l~~~sDa~IvlpGG---~GTL~Ei~~~~~ 126 (213)
.+...++..||+++.|||- -|..-|...+-.
T Consensus 51 ~~~l~~L~~cD~i~~l~gWe~S~GA~~E~~~A~~ 84 (92)
T PF14359_consen 51 RICLAMLSDCDAIYMLPGWENSRGARLEHELAKK 84 (92)
T ss_pred HHHHHHHHhCCEEEEcCCcccCcchHHHHHHHHH
Confidence 4455567799999999983 699999987764
No 124
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=41.01 E-value=1.2e+02 Score=27.04 Aligned_cols=70 Identities=13% Similarity=0.054 Sum_probs=41.0
Q ss_pred HHHHHHhcCeEEEec--CCCCcHHHHHHHHHHHHhCCCCCceEEEecCccchHHHHHHHHHHHcCCCCccccCcEEEcCC
Q 028138 98 KAEMARQADAFIALP--GGYGTLEELLEVITWAQLGIHRKPVGLLNVDGFYNSLLSFVDKAVDEGFISPTARRIIISAPT 175 (213)
Q Consensus 98 ~~~l~~~sDa~Ivlp--GG~GTL~Ei~~~~~~~~lg~~~kPiill~~~g~~~~l~~~l~~~~~~g~i~~~~~~~i~~~~~ 175 (213)
...+...||++|... .+.|. =+.|++. .++|||.-+..|. .+. +.......+.-.+|
T Consensus 294 ~~~~l~~adv~v~~s~~e~~~~--~llEAmA------~G~PVIas~~~g~----~e~---------i~~~~~G~lv~~~d 352 (396)
T cd03818 294 YLALLQVSDVHVYLTYPFVLSW--SLLEAMA------CGCLVVGSDTAPV----REV---------ITDGENGLLVDFFD 352 (396)
T ss_pred HHHHHHhCcEEEEcCcccccch--HHHHHHH------CCCCEEEcCCCCc----hhh---------cccCCceEEcCCCC
Confidence 344568899988643 33332 2556664 5899998876432 222 11112233334568
Q ss_pred HHHHHHHHHhhcC
Q 028138 176 AKKLVRQLEEYVP 188 (213)
Q Consensus 176 ~ee~~~~l~~~~~ 188 (213)
++++.+.|.+...
T Consensus 353 ~~~la~~i~~ll~ 365 (396)
T cd03818 353 PDALAAAVIELLD 365 (396)
T ss_pred HHHHHHHHHHHHh
Confidence 9988888877644
No 125
>TIGR02113 coaC_strep phosphopantothenoylcysteine decarboxylase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the N-terminal region of TIGR00521, corresponding to phosphopantothenoylcysteine decarboxylase activity.
Probab=40.74 E-value=48 Score=27.20 Aligned_cols=84 Identities=14% Similarity=0.185 Sum_probs=50.7
Q ss_pred HhcCeEEEecCCCCcHHHHHHHHHH-----HHhC-CCCCceEEEe--cCccchH--HHHHHHHHHHcCCC--Ccccc---
Q 028138 103 RQADAFIALPGGYGTLEELLEVITW-----AQLG-IHRKPVGLLN--VDGFYNS--LLSFVDKAVDEGFI--SPTAR--- 167 (213)
Q Consensus 103 ~~sDa~IvlpGG~GTL~Ei~~~~~~-----~~lg-~~~kPiill~--~~g~~~~--l~~~l~~~~~~g~i--~~~~~--- 167 (213)
..+|++||.|=..+|+.-+..=++- .-+- ..++||++.- ...+|+. ..+.++.+.+.|+. ++...
T Consensus 75 ~~aD~~vVaPaSanTlakiA~GiaDnLlt~~a~a~~~~~pv~i~PaMn~~M~~~p~~~~nl~~L~~~G~~vi~P~~g~la 154 (177)
T TIGR02113 75 KKADLFLVAPASANTIAHLAHGFADNIVTSVALALPPETPKLIAPAMNTKMYQNPITQRNIKILKKIGYQEIQPKESLLA 154 (177)
T ss_pred hhhCEEEEEeCCHHHHHHHHcCcCCcHHHHHHHHcCCCCCEEEEeCCCHHHhCCHHHHHHHHHHHHCCCEEECCCcCccc
Confidence 3689999999999998877532211 1111 2368998883 1357853 44556777776653 33331
Q ss_pred ---CcEEEcCCHHHHHHHHHhh
Q 028138 168 ---RIIISAPTAKKLVRQLEEY 186 (213)
Q Consensus 168 ---~~i~~~~~~ee~~~~l~~~ 186 (213)
.-.=-..+++++++.++++
T Consensus 155 ~g~~g~g~~~~~~~i~~~~~~~ 176 (177)
T TIGR02113 155 CGDYGRGALADLDDILQTIKEI 176 (177)
T ss_pred CCCccccCCCCHHHHHHHHHHh
Confidence 1122345788888887664
No 126
>CHL00139 rpl18 ribosomal protein L18; Validated
Probab=40.52 E-value=66 Score=24.50 Aligned_cols=38 Identities=24% Similarity=0.520 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHH----CCCeEE-E--cCC-CcChhHHHHHHHHhcC
Q 028138 27 EAAVELGKELVE----RKLDLV-Y--GGG-SVGLMGLVSQAVHDGG 64 (213)
Q Consensus 27 ~~A~~lG~~lA~----~G~~lv-~--GGg-~~GlM~a~~~ga~~~g 64 (213)
+.|+.+|+.||+ .|+.-| + ||. ..|-+.|+++||.++|
T Consensus 61 ~aA~~vG~lla~ra~~~gi~~vvfDrgg~~yhGrV~a~a~~are~G 106 (109)
T CHL00139 61 DASKLVGQKLAKKSLKKGITKVVFDRGGKLYHGRIKALAEAAREAG 106 (109)
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEcCCCCccchHHHHHHHHHHHhC
Confidence 478888888887 454433 2 331 2579999999999987
No 127
>cd06353 PBP1_BmpA_Med_like Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea. Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea. Med, a cell-surface localized protein, which regulates the competence transcription factor gene comK in Bacillus subtilis, lacks the DNA binding domain when compared with structures of transcription regulators from the LacI family. Nevertheless, Med has significant overall sequence homology to various periplasmic substrate-binding proteins. Moreover, the structure of Med shows a striking similarity to PnrA, a periplasmic nucleoside binding protein of an ATP-binding cassette transport system. Members of this group contain the type I periplasmic sugar-binding protein-like fold.
Probab=40.42 E-value=81 Score=26.96 Aligned_cols=54 Identities=20% Similarity=0.257 Sum_probs=36.1
Q ss_pred eEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEcCCCcChhHHHHHHHHhcCCeEEEEe
Q 028138 10 RICVFCGSSSGKKATYQEAAVELGKELVERKLDLVYGGGSVGLMGLVSQAVHDGGRHVLGVI 71 (213)
Q Consensus 10 ~I~V~ggs~~~~~~~~~~~A~~lG~~lA~~G~~lv~GGg~~GlM~a~~~ga~~~gG~viGv~ 71 (213)
...++.++.. |+ +.++++++.|-.+|..+|+..+ .| ..+.+.|.+.|..+||+-
T Consensus 154 v~~~~~g~~~--D~---~~a~~~a~~l~~~G~DvI~~~~-~~--~g~~~aa~~~g~~~IG~d 207 (258)
T cd06353 154 VKVIWTGSWF--DP---AKEKEAALALIDQGADVIYQHT-DS--PGVIQAAEEKGVYAIGYV 207 (258)
T ss_pred EEEEEecCCC--Cc---HHHHHHHHHHHHCCCcEEEecC-CC--hHHHHHHHHhCCEEEeec
Confidence 3445544432 33 3457777777788999998875 23 245566778899999983
No 128
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=40.35 E-value=2.6e+02 Score=24.56 Aligned_cols=102 Identities=14% Similarity=0.231 Sum_probs=57.4
Q ss_pred ceEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCeEE-EcCCCcChhHHHHHHHHhcCCeEEEEeCCCCCCCCCCCCCCce
Q 028138 9 KRICVFCGSSSGKKATYQEAAVELGKELVERKLDLV-YGGGSVGLMGLVSQAVHDGGRHVLGVIPKTLTPREITGDPVGE 87 (213)
Q Consensus 9 ~~I~V~ggs~~~~~~~~~~~A~~lG~~lA~~G~~lv-~GGg~~GlM~a~~~ga~~~gG~viGv~P~~~~~~e~~~~~~~~ 87 (213)
-++=|.+....- -|+-. ..-+-.+.|.+.|+.++ |-.-. +. .++...+.|-..+ .|-. .+.. .+ ..
T Consensus 94 iKlEVi~d~~~L-lpd~~-~tv~aa~~L~~~Gf~vlpyc~dd--~~--~ar~l~~~G~~~v--mPlg-~pIG--sg-~G- 160 (248)
T cd04728 94 IKLEVIGDDKTL-LPDPI-ETLKAAEILVKEGFTVLPYCTDD--PV--LAKRLEDAGCAAV--MPLG-SPIG--SG-QG- 160 (248)
T ss_pred EEEEEecCcccc-ccCHH-HHHHHHHHHHHCCCEEEEEeCCC--HH--HHHHHHHcCCCEe--CCCC-cCCC--CC-CC-
Confidence 345566544332 22222 23456677788999988 65432 33 3444555566555 3311 1111 11 00
Q ss_pred eeecCCHHHHHHHHHHhcCeEEEecCCCCcHHHHHHHHHH
Q 028138 88 VKTVSDMHQRKAEMARQADAFIALPGGYGTLEELLEVITW 127 (213)
Q Consensus 88 ~~~~~~~~~R~~~l~~~sDa~IvlpGG~GTL~Ei~~~~~~ 127 (213)
..+ .+.-+.+.+..+.-|+..||++|.+++..++.+
T Consensus 161 ---i~~-~~~I~~I~e~~~vpVI~egGI~tpeda~~Amel 196 (248)
T cd04728 161 ---LLN-PYNLRIIIERADVPVIVDAGIGTPSDAAQAMEL 196 (248)
T ss_pred ---CCC-HHHHHHHHHhCCCcEEEeCCCCCHHHHHHHHHc
Confidence 111 333345666678999999999999999998853
No 129
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=40.26 E-value=1.2e+02 Score=25.65 Aligned_cols=74 Identities=23% Similarity=0.345 Sum_probs=41.6
Q ss_pred HHHHHHHHhcCeEEEecCC------CCcHHHHHHHHHHHHhCCCCCceEEEecCccchHHHHHHHHHHHcCCCCccccCc
Q 028138 96 QRKAEMARQADAFIALPGG------YGTLEELLEVITWAQLGIHRKPVGLLNVDGFYNSLLSFVDKAVDEGFISPTARRI 169 (213)
Q Consensus 96 ~R~~~l~~~sDa~IvlpGG------~GTL~Ei~~~~~~~~lg~~~kPiill~~~g~~~~l~~~l~~~~~~g~i~~~~~~~ 169 (213)
+...-+...||++|...-. -|.-.=++|++. .++|++..+..+.- .+ +.++ ....
T Consensus 247 ~~l~~~~~~adi~l~~s~~~~~~~~e~~~~~~~Ea~a------~G~Pvi~~~~~~~~-~~-------i~~~-----~~g~ 307 (355)
T cd03799 247 EEVRELLRAADLFVLPSVTAADGDREGLPVVLMEAMA------MGLPVISTDVSGIP-EL-------VEDG-----ETGL 307 (355)
T ss_pred HHHHHHHHhCCEEEecceecCCCCccCccHHHHHHHH------cCCCEEecCCCCcc-hh-------hhCC-----CceE
Confidence 3455567889987764322 222234666664 57999987764332 21 1111 1222
Q ss_pred EEEcCCHHHHHHHHHhhcC
Q 028138 170 IISAPTAKKLVRQLEEYVP 188 (213)
Q Consensus 170 i~~~~~~ee~~~~l~~~~~ 188 (213)
+.-.+|++++.+.|.++..
T Consensus 308 ~~~~~~~~~l~~~i~~~~~ 326 (355)
T cd03799 308 LVPPGDPEALADAIERLLD 326 (355)
T ss_pred EeCCCCHHHHHHHHHHHHh
Confidence 3333589999888887643
No 130
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=40.10 E-value=1.7e+02 Score=26.23 Aligned_cols=33 Identities=21% Similarity=0.353 Sum_probs=21.0
Q ss_pred cCCceEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCC
Q 028138 6 SRFKRICVFCGSSSGKKATYQEAAVELGKELVERKL 41 (213)
Q Consensus 6 ~~~~~I~V~ggs~~~~~~~~~~~A~~lG~~lA~~G~ 41 (213)
+++++|+++.-. . ++.-.+.++++.++|.++|+
T Consensus 3 ~~~~~I~iv~~~--~-~~~~~~~~~~l~~~L~~~g~ 35 (306)
T PRK03372 3 TASRRVLLVAHT--G-RDEATEAARRVAKQLGDAGI 35 (306)
T ss_pred CCccEEEEEecC--C-CHHHHHHHHHHHHHHHHCCC
Confidence 356679999332 2 45555677788877765553
No 131
>PLN02275 transferase, transferring glycosyl groups
Probab=40.00 E-value=2.2e+02 Score=25.30 Aligned_cols=70 Identities=17% Similarity=0.198 Sum_probs=39.9
Q ss_pred HHHHHHHHhcCeEEEec-C--CCCcHHHHHHHHHHHHhCCCCCceEEEecCccchHHHHHHHHHHHcCCCCccccCcEEE
Q 028138 96 QRKAEMARQADAFIALP-G--GYGTLEELLEVITWAQLGIHRKPVGLLNVDGFYNSLLSFVDKAVDEGFISPTARRIIIS 172 (213)
Q Consensus 96 ~R~~~l~~~sDa~Ivlp-G--G~GTL~Ei~~~~~~~~lg~~~kPiill~~~g~~~~l~~~l~~~~~~g~i~~~~~~~i~~ 172 (213)
+.-..++..||++|+.. . +.|--.=+.|++. .++||+..+.+|. .+ ++.+| .... +
T Consensus 298 ~~~~~~l~~aDv~v~~~~s~~~e~~p~~llEAmA------~G~PVVa~~~gg~----~e----iv~~g-----~~G~--l 356 (371)
T PLN02275 298 EDYPLLLGSADLGVSLHTSSSGLDLPMKVVDMFG------CGLPVCAVSYSCI----GE----LVKDG-----KNGL--L 356 (371)
T ss_pred HHHHHHHHhCCEEEEeccccccccccHHHHHHHH------CCCCEEEecCCCh----HH----HccCC-----CCeE--E
Confidence 33445678999998632 2 2233344667665 5899999876542 22 22221 1122 2
Q ss_pred cCCHHHHHHHHHhh
Q 028138 173 APTAKKLVRQLEEY 186 (213)
Q Consensus 173 ~~~~ee~~~~l~~~ 186 (213)
++|++++.+.|.+.
T Consensus 357 v~~~~~la~~i~~l 370 (371)
T PLN02275 357 FSSSSELADQLLEL 370 (371)
T ss_pred ECCHHHHHHHHHHh
Confidence 35788888877653
No 132
>COG0794 GutQ Predicted sugar phosphate isomerase involved in capsule formation [Cell envelope biogenesis, outer membrane]
Probab=39.86 E-value=2.3e+02 Score=23.97 Aligned_cols=40 Identities=28% Similarity=0.273 Sum_probs=24.7
Q ss_pred HHHHHH-CCCeEEEcCCCcChhHHHHHHHHhc-CCeEEEEeC
Q 028138 33 GKELVE-RKLDLVYGGGSVGLMGLVSQAVHDG-GRHVLGVIP 72 (213)
Q Consensus 33 G~~lA~-~G~~lv~GGg~~GlM~a~~~ga~~~-gG~viGv~P 72 (213)
-+.|++ +|-.+|+|-|+.|+++-.-..-+.+ |-++.-|-|
T Consensus 32 ~~~i~~~~gkv~V~G~GkSG~Igkk~Aa~L~s~G~~a~fv~p 73 (202)
T COG0794 32 VELILECKGKVFVTGVGKSGLIGKKFAARLASTGTPAFFVGP 73 (202)
T ss_pred HHHHHhcCCcEEEEcCChhHHHHHHHHHHHHccCCceEEecC
Confidence 344444 7899999999999886554433333 444444434
No 133
>PRK13054 lipid kinase; Reviewed
Probab=39.82 E-value=1.6e+02 Score=25.64 Aligned_cols=34 Identities=26% Similarity=0.465 Sum_probs=22.4
Q ss_pred cCeEEEecCCCCcHHHHHHHHHHHHhCCCCCceEEE
Q 028138 105 ADAFIALPGGYGTLEELLEVITWAQLGIHRKPVGLL 140 (213)
Q Consensus 105 sDa~IvlpGG~GTL~Ei~~~~~~~~lg~~~kPiill 140 (213)
.| .|+.-||=||++|+...+.-.. ..++.|+.++
T Consensus 57 ~d-~vvv~GGDGTl~evv~~l~~~~-~~~~~~lgii 90 (300)
T PRK13054 57 VA-TVIAGGGDGTINEVATALAQLE-GDARPALGIL 90 (300)
T ss_pred CC-EEEEECCccHHHHHHHHHHhhc-cCCCCcEEEE
Confidence 35 5668899999999987763111 1123577777
No 134
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=39.66 E-value=1.1e+02 Score=27.89 Aligned_cols=49 Identities=10% Similarity=0.062 Sum_probs=26.7
Q ss_pred CCc-eEEEecCccchHHHHHHHHHHHcCCCCccccCcEEEcCCHHHHHHHHHh
Q 028138 134 RKP-VGLLNVDGFYNSLLSFVDKAVDEGFISPTARRIIISAPTAKKLVRQLEE 185 (213)
Q Consensus 134 ~kP-iill~~~g~~~~l~~~l~~~~~~g~i~~~~~~~i~~~~~~ee~~~~l~~ 185 (213)
.+| +++++..-|+......+..+...-.. ....+++.-+++.++++..+
T Consensus 125 srpllvilDd~fy~ks~Ryel~~LAr~~~~---~~~~V~ld~ple~~l~RN~~ 174 (340)
T TIGR03575 125 SRPLCLVLDDNFYYQSMRYEVYQLARKYSL---GFCQLFLDCPVESCLLRNKQ 174 (340)
T ss_pred hCCCCceecCCCCCHHHHHHHHHHHHHhCC---CEEEEEEeCCHHHHHHHHhc
Confidence 467 46666554556666655554332111 12446666667776666654
No 135
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=39.13 E-value=64 Score=28.90 Aligned_cols=119 Identities=18% Similarity=0.186 Sum_probs=65.8
Q ss_pred CceEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEcCCCcChhHHHHHHHHhcCCeEEEEeCCCCCCCCCCCCCCce
Q 028138 8 FKRICVFCGSSSGKKATYQEAAVELGKELVERKLDLVYGGGSVGLMGLVSQAVHDGGRHVLGVIPKTLTPREITGDPVGE 87 (213)
Q Consensus 8 ~~~I~V~ggs~~~~~~~~~~~A~~lG~~lA~~G~~lv~GGg~~GlM~a~~~ga~~~gG~viGv~P~~~~~~e~~~~~~~~ 87 (213)
|++|+|+.- . ..+.-.+.+.++.++|.++|+.++..--. +... +. +... ...-+..++.
T Consensus 1 m~~igiv~n--~-~~~~~~~~~~~l~~~L~~~g~~v~~~~~~----------~~~~-----~~-~~~~--~~~~~~~~~~ 59 (305)
T PRK02649 1 MPKAGIIYN--D-GKPLAVRTAEELQDKLEAAGWEVVRASSS----------GGIL-----GY-ANPD--QPVCHTGIDQ 59 (305)
T ss_pred CCEEEEEEc--C-CCHHHHHHHHHHHHHHHHCCCEEEEecch----------hhhc-----Cc-cccc--cccccccccc
Confidence 467999932 2 25566678999999999999998764311 1110 10 0000 0000000000
Q ss_pred eeecCCHHHHHHHHHHhcCeEEEecCCCCcHHHHHHHHHHHHhCCCCCceEEEecC--ccc-----hHHHHHHHHHHHcC
Q 028138 88 VKTVSDMHQRKAEMARQADAFIALPGGYGTLEELLEVITWAQLGIHRKPVGLLNVD--GFY-----NSLLSFVDKAVDEG 160 (213)
Q Consensus 88 ~~~~~~~~~R~~~l~~~sDa~IvlpGG~GTL~Ei~~~~~~~~lg~~~kPiill~~~--g~~-----~~l~~~l~~~~~~g 160 (213)
..+ .-+.+.+|.+|++ ||=||+-..+..+. ..++||+-+|.+ ||. +.+.+.++++.+..
T Consensus 60 ----~~~----~~~~~~~Dlvi~i-GGDGTlL~aar~~~-----~~~iPilGIN~G~lGFLt~~~~~~~~~~l~~l~~g~ 125 (305)
T PRK02649 60 ----LVP----PGFDSSMKFAIVL-GGDGTVLSAARQLA-----PCGIPLLTINTGHLGFLTEAYLNQLDEAIDQVLAGQ 125 (305)
T ss_pred ----cCh----hhcccCcCEEEEE-eCcHHHHHHHHHhc-----CCCCcEEEEeCCCCcccccCCHHHHHHHHHHHHcCC
Confidence 000 1122346766655 78899876665432 357899988865 565 56666777776555
Q ss_pred C
Q 028138 161 F 161 (213)
Q Consensus 161 ~ 161 (213)
|
T Consensus 126 y 126 (305)
T PRK02649 126 Y 126 (305)
T ss_pred c
Confidence 4
No 136
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=39.12 E-value=40 Score=25.82 Aligned_cols=29 Identities=24% Similarity=0.354 Sum_probs=19.8
Q ss_pred eEEEcCCCcChhHHHHHHHHhcCCeEEEEe
Q 028138 42 DLVYGGGSVGLMGLVSQAVHDGGRHVLGVI 71 (213)
Q Consensus 42 ~lv~GGg~~GlM~a~~~ga~~~gG~viGv~ 71 (213)
.||+||+. |+=.++++...+.|+.++.++
T Consensus 3 ~lItGa~~-giG~~~a~~l~~~g~~~v~~~ 31 (167)
T PF00106_consen 3 VLITGASS-GIGRALARALARRGARVVILT 31 (167)
T ss_dssp EEEETTTS-HHHHHHHHHHHHTTTEEEEEE
T ss_pred EEEECCCC-HHHHHHHHHHHhcCceEEEEe
Confidence 56777775 777777777777766554443
No 137
>COG2515 Acd 1-aminocyclopropane-1-carboxylate deaminase [Amino acid transport and metabolism]
Probab=39.10 E-value=96 Score=28.15 Aligned_cols=39 Identities=33% Similarity=0.353 Sum_probs=24.8
Q ss_pred hcCeEEEecCCCCcHHHHHHHHHHHHhCCCCCceEEEecCcc
Q 028138 104 QADAFIALPGGYGTLEELLEVITWAQLGIHRKPVGLLNVDGF 145 (213)
Q Consensus 104 ~sDa~IvlpGG~GTL~Ei~~~~~~~~lg~~~kPiill~~~g~ 145 (213)
.=|.+|+.+|+.||..-+..-+ .+++ +..+||-++..+.
T Consensus 180 ~fD~vVva~gs~gT~AGl~~g~--~~~~-~~~~ViG~~v~~~ 218 (323)
T COG2515 180 KFDSVVVAPGSGGTHAGLLVGL--AQLG-PDVEVIGIDVSAD 218 (323)
T ss_pred CCCEEEEeCCCcchHHHHHHHh--hhcc-CCCceEEEeecCC
Confidence 3478888888888877665443 2333 3567776665543
No 138
>TIGR00147 lipid kinase, YegS/Rv2252/BmrU family. The E. coli member of this family, YegS has been purified and shown to have phosphatidylglycerol kinase activity. The member from M. tuberculosis, Rv2252, has diacylglycerol kinase activity. BmrU from B. subtilis is in an operon with multidrug efflux transporter Bmr, but is uncharacterized.
Probab=38.95 E-value=81 Score=27.24 Aligned_cols=31 Identities=29% Similarity=0.524 Sum_probs=23.0
Q ss_pred eEEEcCCCcChhHHHHHHHHhcC-CeEEEEeCC
Q 028138 42 DLVYGGGSVGLMGLVSQAVHDGG-RHVLGVIPK 73 (213)
Q Consensus 42 ~lv~GGg~~GlM~a~~~ga~~~g-G~viGv~P~ 73 (213)
.||.-||. |-...+.++..... ...+|++|.
T Consensus 60 ~ivv~GGD-GTl~~v~~~l~~~~~~~~lgiiP~ 91 (293)
T TIGR00147 60 TVIAGGGD-GTINEVVNALIQLDDIPALGILPL 91 (293)
T ss_pred EEEEECCC-ChHHHHHHHHhcCCCCCcEEEEcC
Confidence 45556675 99999999887643 347999985
No 139
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=38.94 E-value=1.5e+02 Score=24.98 Aligned_cols=70 Identities=17% Similarity=0.198 Sum_probs=40.2
Q ss_pred HHHHHHHHhcCeEEEec--C--CC-CcHHHHHHHHHHHHhCCCCCceEEEecCccchHHHHHHHHHHHcCCCCccccCcE
Q 028138 96 QRKAEMARQADAFIALP--G--GY-GTLEELLEVITWAQLGIHRKPVGLLNVDGFYNSLLSFVDKAVDEGFISPTARRII 170 (213)
Q Consensus 96 ~R~~~l~~~sDa~Ivlp--G--G~-GTL~Ei~~~~~~~~lg~~~kPiill~~~g~~~~l~~~l~~~~~~g~i~~~~~~~i 170 (213)
+...-++..||++|.-. . |. ++ +.|++. .++||+..+..+ .+.+. ......+
T Consensus 259 ~~~~~~~~~ad~~v~ps~~e~~~~~~~---~~Ea~a------~G~PvI~~~~~~-~~~i~-------------~~~~g~~ 315 (366)
T cd03822 259 EELPELFSAADVVVLPYRSADQTQSGV---LAYAIG------FGKPVISTPVGH-AEEVL-------------DGGTGLL 315 (366)
T ss_pred HHHHHHHhhcCEEEecccccccccchH---HHHHHH------cCCCEEecCCCC-hheee-------------eCCCcEE
Confidence 34455678899887432 1 32 34 444553 479999877654 22211 1122334
Q ss_pred EEcCCHHHHHHHHHhhcC
Q 028138 171 ISAPTAKKLVRQLEEYVP 188 (213)
Q Consensus 171 ~~~~~~ee~~~~l~~~~~ 188 (213)
+-.+|++++.+.|.+...
T Consensus 316 ~~~~d~~~~~~~l~~l~~ 333 (366)
T cd03822 316 VPPGDPAALAEAIRRLLA 333 (366)
T ss_pred EcCCCHHHHHHHHHHHHc
Confidence 445678888888877644
No 140
>COG0794 GutQ Predicted sugar phosphate isomerase involved in capsule formation [Cell envelope biogenesis, outer membrane]
Probab=38.90 E-value=2.4e+02 Score=23.88 Aligned_cols=38 Identities=26% Similarity=0.340 Sum_probs=22.5
Q ss_pred HHHhcCeEEEecCCCCcHHHHHHHHHHHHhCCCCCceEEEe
Q 028138 101 MARQADAFIALPGGYGTLEELLEVITWAQLGIHRKPVGLLN 141 (213)
Q Consensus 101 l~~~sDa~IvlpGG~GTL~Ei~~~~~~~~lg~~~kPiill~ 141 (213)
|+..-|.+|++.|+ |--.|+..+....+ ..+.|++.+.
T Consensus 83 ~i~~~DvviaiS~S-GeT~el~~~~~~aK--~~g~~liaiT 120 (202)
T COG0794 83 MITPGDVVIAISGS-GETKELLNLAPKAK--RLGAKLIAIT 120 (202)
T ss_pred CCCCCCEEEEEeCC-CcHHHHHHHHHHHH--HcCCcEEEEe
Confidence 45556777777665 44467776664322 2346777664
No 141
>cd07225 Pat_PNPLA6_PNPLA7 Patatin-like phospholipase domain containing protein 6 and protein 7. Patatin-like phospholipase domain containing protein 6 (PNPLA6) and protein 7 (PNPLA7) are 60% identical to each other. PNPLA6 is commonly known as Neuropathy Target Esterase (NTE). NTE has at least two functional domains: the N-terminal domain putatively regulatory domain and the C-terminal catalytic domain which shows esterase activity. NTE shows phospholipase activity for lysophosphatidylcholine (LPC) and phosphatidylcholine (PC). Exposure of NTE to organophosphates leads to organophosphate-induced delayed neurotoxicity (OPIDN). OPIDN is a progressive neurological condition that is characterized by weakness, paralysis, pain, and paresthesia. PNPLA7 is an insulin-regulated phospholipase that is homologous to Neuropathy Target Esterase (NTE or PNPLA6) and is also known as NTE-related esterase (NRE). Human NRE is predominantly expressed in prostate, white adipose, and pancreatic tissue. NRE
Probab=38.69 E-value=31 Score=30.75 Aligned_cols=31 Identities=32% Similarity=0.506 Sum_probs=25.6
Q ss_pred HHHHHHHHHCCCeEEEcCCCcChhHHHHHHHHh
Q 028138 30 VELGKELVERKLDLVYGGGSVGLMGLVSQAVHD 62 (213)
Q Consensus 30 ~~lG~~lA~~G~~lv~GGg~~GlM~a~~~ga~~ 62 (213)
+.|+|.|..+...||.+|| |+=+.++-|+++
T Consensus 5 ~rl~r~l~~~~~gLvL~GG--G~RG~ahiGvL~ 35 (306)
T cd07225 5 SRLARVLTGNSIALVLGGG--GARGCAHIGVIK 35 (306)
T ss_pred HHHHHHhcCCCEEEEECCh--HHHHHHHHHHHH
Confidence 4688999999999999886 788888888775
No 142
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=38.69 E-value=1.8e+02 Score=22.21 Aligned_cols=74 Identities=18% Similarity=0.285 Sum_probs=42.4
Q ss_pred HHHHHHHHHhcCeEEEecCCCCcHHHHHHHHHHHHhCCCCCceEEEecCccchHHHHHHHHHHHcCCCCccccCcEEEcC
Q 028138 95 HQRKAEMARQADAFIALPGGYGTLEELLEVITWAQLGIHRKPVGLLNVDGFYNSLLSFVDKAVDEGFISPTARRIIISAP 174 (213)
Q Consensus 95 ~~R~~~l~~~sDa~IvlpGG~GTL~Ei~~~~~~~~lg~~~kPiill~~~g~~~~l~~~l~~~~~~g~i~~~~~~~i~~~~ 174 (213)
......+...||++|...---|.-.=+.|++. .++|+++-+.. .+.. .+.++ ....++-..
T Consensus 83 ~~~l~~~~~~~di~v~~s~~e~~~~~~~Ea~~------~g~pvI~~~~~-~~~e-------~~~~~-----~~g~~~~~~ 143 (172)
T PF00534_consen 83 DDELDELYKSSDIFVSPSRNEGFGLSLLEAMA------CGCPVIASDIG-GNNE-------IINDG-----VNGFLFDPN 143 (172)
T ss_dssp HHHHHHHHHHTSEEEE-BSSBSS-HHHHHHHH------TT-EEEEESST-HHHH-------HSGTT-----TSEEEESTT
T ss_pred ccccccccccceeccccccccccccccccccc------cccceeecccc-CCce-------eeccc-----cceEEeCCC
Confidence 34456677889999887643222224556664 57999987753 3222 22121 233455566
Q ss_pred CHHHHHHHHHhhc
Q 028138 175 TAKKLVRQLEEYV 187 (213)
Q Consensus 175 ~~ee~~~~l~~~~ 187 (213)
|++++.+.|.++.
T Consensus 144 ~~~~l~~~i~~~l 156 (172)
T PF00534_consen 144 DIEELADAIEKLL 156 (172)
T ss_dssp SHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 8899999888753
No 143
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=38.55 E-value=1.6e+02 Score=26.42 Aligned_cols=71 Identities=17% Similarity=0.255 Sum_probs=41.1
Q ss_pred HHHHHHHhcCeEEEe---cCCCCcHHHHHHHHHHHHhCCCCCceEEEecCccchHHHHHHHHHHHcCCCCccccCcEE-E
Q 028138 97 RKAEMARQADAFIAL---PGGYGTLEELLEVITWAQLGIHRKPVGLLNVDGFYNSLLSFVDKAVDEGFISPTARRIII-S 172 (213)
Q Consensus 97 R~~~l~~~sDa~Ivl---pGG~GTL~Ei~~~~~~~~lg~~~kPiill~~~g~~~~l~~~l~~~~~~g~i~~~~~~~i~-~ 172 (213)
....+...||++|+- ..|+|.. +.|++. .++|||.-+.+|. .. . +.++ ....+. -
T Consensus 269 ~l~~~~~~aDv~v~pS~~~E~f~~~--~lEAma------~G~PVI~s~~gg~-~E---i----v~~~-----~~G~~l~~ 327 (380)
T PRK15484 269 KMHNYYPLADLVVVPSQVEEAFCMV--AVEAMA------AGKPVLASTKGGI-TE---F----VLEG-----ITGYHLAE 327 (380)
T ss_pred HHHHHHHhCCEEEeCCCCccccccH--HHHHHH------cCCCEEEeCCCCc-Hh---h----cccC-----CceEEEeC
Confidence 344567899998863 2455542 556664 5799998876543 22 1 1111 112212 2
Q ss_pred cCCHHHHHHHHHhhcC
Q 028138 173 APTAKKLVRQLEEYVP 188 (213)
Q Consensus 173 ~~~~ee~~~~l~~~~~ 188 (213)
..|++++.+.|.+...
T Consensus 328 ~~d~~~la~~I~~ll~ 343 (380)
T PRK15484 328 PMTSDSIISDINRTLA 343 (380)
T ss_pred CCCHHHHHHHHHHHHc
Confidence 4688888888877644
No 144
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=38.45 E-value=1.7e+02 Score=26.03 Aligned_cols=31 Identities=23% Similarity=0.316 Sum_probs=18.5
Q ss_pred CCceEEEEcCCCCCCCHHHHHHHHHHHHHHHHCC
Q 028138 7 RFKRICVFCGSSSGKKATYQEAAVELGKELVERK 40 (213)
Q Consensus 7 ~~~~I~V~ggs~~~~~~~~~~~A~~lG~~lA~~G 40 (213)
.+++|+|+.-. . .+.-.+.++++.++|.++|
T Consensus 3 ~~~~v~iv~~~--~-k~~a~e~~~~i~~~L~~~g 33 (295)
T PRK01231 3 SFRNIGLIGRL--G-SSSVVETLRRLKDFLLDRG 33 (295)
T ss_pred CCCEEEEEecC--C-CHHHHHHHHHHHHHHHHCC
Confidence 36679999332 2 4455556667776665544
No 145
>PRK13057 putative lipid kinase; Reviewed
Probab=38.42 E-value=66 Score=27.92 Aligned_cols=42 Identities=21% Similarity=0.396 Sum_probs=27.9
Q ss_pred HHHHHHHHHHCCC-eEEEcCCCcChhHHHHHHHHhcCCeEEEEeCC
Q 028138 29 AVELGKELVERKL-DLVYGGGSVGLMGLVSQAVHDGGRHVLGVIPK 73 (213)
Q Consensus 29 A~~lG~~lA~~G~-~lv~GGg~~GlM~a~~~ga~~~gG~viGv~P~ 73 (213)
|.++.+.+ +.++ .||..||. |....+.++.... +..+||+|.
T Consensus 40 a~~~~~~~-~~~~d~iiv~GGD-GTv~~v~~~l~~~-~~~lgiiP~ 82 (287)
T PRK13057 40 LSEVIEAY-ADGVDLVIVGGGD-GTLNAAAPALVET-GLPLGILPL 82 (287)
T ss_pred HHHHHHHH-HcCCCEEEEECch-HHHHHHHHHHhcC-CCcEEEECC
Confidence 44455543 3444 34556665 9999999988764 456999995
No 146
>PRK07109 short chain dehydrogenase; Provisional
Probab=38.08 E-value=1.7e+02 Score=25.83 Aligned_cols=56 Identities=11% Similarity=0.135 Sum_probs=32.1
Q ss_pred CCceEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEcCCCcChhHHHHHHHHhcCCeEEEE
Q 028138 7 RFKRICVFCGSSSGKKATYQEAAVELGKELVERKLDLVYGGGSVGLMGLVSQAVHDGGRHVLGV 70 (213)
Q Consensus 7 ~~~~I~V~ggs~~~~~~~~~~~A~~lG~~lA~~G~~lv~GGg~~GlM~a~~~ga~~~gG~viGv 70 (213)
+.++|.|.|+|+. ..+.+.+.|+++|+.|+.-+-..--.+...+...+.|+++..+
T Consensus 7 ~~k~vlITGas~g--------IG~~la~~la~~G~~Vvl~~R~~~~l~~~~~~l~~~g~~~~~v 62 (334)
T PRK07109 7 GRQVVVITGASAG--------VGRATARAFARRGAKVVLLARGEEGLEALAAEIRAAGGEALAV 62 (334)
T ss_pred CCCEEEEECCCCH--------HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEE
Confidence 3457888876642 4567788888899988754432111222333333456665555
No 147
>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=37.98 E-value=1.9e+02 Score=25.61 Aligned_cols=60 Identities=20% Similarity=0.228 Sum_probs=37.5
Q ss_pred CCceEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCeE------------------------------EEcCCCcChhHHH
Q 028138 7 RFKRICVFCGSSSGKKATYQEAAVELGKELVERKLDL------------------------------VYGGGSVGLMGLV 56 (213)
Q Consensus 7 ~~~~I~V~ggs~~~~~~~~~~~A~~lG~~lA~~G~~l------------------------------v~GGg~~GlM~a~ 56 (213)
++++|+|+.- . .++.-.+.+.++.++|.++|+.+ |+=||. |-+=.+
T Consensus 4 ~~~~i~iv~~--~-~~~~~~~~~~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~lGGD-GT~L~a 79 (292)
T PRK03378 4 HFKCIGIVGH--P-RHPTALTTHEMLYHWLTSKGYEVIVEQQIAHELQLKNVKTGTLAEIGQQADLAIVVGGD-GNMLGA 79 (292)
T ss_pred cCCEEEEEEe--C-CCHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCcccccccchhhcCCCCCEEEEECCc-HHHHHH
Confidence 4778999932 2 25666677888888776555332 233454 766666
Q ss_pred HHHHHhcCCeEEEE
Q 028138 57 SQAVHDGGRHVLGV 70 (213)
Q Consensus 57 ~~ga~~~gG~viGv 70 (213)
++.+...+-.++||
T Consensus 80 a~~~~~~~~Pilgi 93 (292)
T PRK03378 80 ARVLARYDIKVIGI 93 (292)
T ss_pred HHHhcCCCCeEEEE
Confidence 66555555677777
No 148
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=37.97 E-value=1.7e+02 Score=26.18 Aligned_cols=30 Identities=23% Similarity=0.392 Sum_probs=19.5
Q ss_pred CCCeEEEcCCCcChhHHHHHHHHhcCCeEEEE
Q 028138 39 RKLDLVYGGGSVGLMGLVSQAVHDGGRHVLGV 70 (213)
Q Consensus 39 ~G~~lv~GGg~~GlM~a~~~ga~~~gG~viGv 70 (213)
..+.++.|| . |-|=-+++-+...+-.++||
T Consensus 69 ~Dlvi~iGG-D-GTlL~aar~~~~~~iPilGI 98 (305)
T PRK02649 69 MKFAIVLGG-D-GTVLSAARQLAPCGIPLLTI 98 (305)
T ss_pred cCEEEEEeC-c-HHHHHHHHHhcCCCCcEEEE
Confidence 467777765 5 86655555555566677887
No 149
>PF01256 Carb_kinase: Carbohydrate kinase; InterPro: IPR000631 This family is related to Hydroxyethylthiazole kinase IPR000417 from INTERPRO and PfkB carbohydrate kinase IPR011611 from INTERPRO implying that it also a carbohydrate kinase. Several uncharacterised proteins have been shown to share regions of similarities, including yeast chromosome XI hypothetical protein YKL151c; Caenorhabditis elegans hypothetical protein R107.2; Escherichia coli hypothetical protein yjeF; Bacillus subtilis hypothetical protein yxkO; Helicobacter pylori hypothetical protein HP1363; Mycobacterium tuberculosis hypothetical protein MtCY77.05c; Mycobacterium leprae hypothetical protein B229_C2_201; Synechocystis sp. (strain PCC 6803) hypothetical protein sll1433; and Methanocaldococcus jannaschii (Methanococcus jannaschii) hypothetical protein MJ1586. These are proteins of about 30 to 40 kDa whose central region is well conserved.; PDB: 3RSG_A 3RT9_A 3RRF_A 3RTB_A 3RRE_A 3RS9_A 3RSS_A 3RRB_A 3RTA_A 3RTD_A ....
Probab=37.94 E-value=2.2e+02 Score=24.48 Aligned_cols=126 Identities=25% Similarity=0.323 Sum_probs=59.7
Q ss_pred EEEcCCCcChhHHH---HHHHHhcC-CeEEEEeCCCCCCCCCCCCCCceeeecC-CH--HHHHHHHHHhcCeEEEecCCC
Q 028138 43 LVYGGGSVGLMGLV---SQAVHDGG-RHVLGVIPKTLTPREITGDPVGEVKTVS-DM--HQRKAEMARQADAFIALPGGY 115 (213)
Q Consensus 43 lv~GGg~~GlM~a~---~~ga~~~g-G~viGv~P~~~~~~e~~~~~~~~~~~~~-~~--~~R~~~l~~~sDa~IvlpGG~ 115 (213)
+|-||.. +..+|+ +++|...| |.|.-+.|....+. ......++++.+ .. ........+..|++++=|| .
T Consensus 2 lvigGS~-~~~GA~~Laa~aAlr~GaGlV~~~~~~~~~~~--~~~~~Pe~m~~~~~~~~~~~~~~~~~~~~av~iGPG-l 77 (242)
T PF01256_consen 2 LVIGGSE-GYPGAAILAARAALRSGAGLVTLATPESIAPV--IASYSPEAMVSPLPSDEDVEILELLEKADAVVIGPG-L 77 (242)
T ss_dssp EEEE-BT-SSHHHHHHHHHHHHHTT-SEEEEEECGCCHHH--HHHHTTTSEEEETTHCCHHHHHHHHCH-SEEEE-TT--
T ss_pred EEEECCC-CCCCHHHHHHHHHHHHCCCcEEEEEcHHHHHH--HHhCCceeEEecccchhhhhhHhhhccCCEEEeecC-C
Confidence 4667755 666665 56666666 67766666533110 000111222111 11 1112234567899888776 4
Q ss_pred CcHHHHHHHHHHHHhCCCCCceEEEecCccchHHHHHHHHHHHcCCCCccccCcEEEcCCHHHHHHHHHhh
Q 028138 116 GTLEELLEVITWAQLGIHRKPVGLLNVDGFYNSLLSFVDKAVDEGFISPTARRIIISAPTAKKLVRQLEEY 186 (213)
Q Consensus 116 GTL~Ei~~~~~~~~lg~~~kPiill~~~g~~~~l~~~l~~~~~~g~i~~~~~~~i~~~~~~ee~~~~l~~~ 186 (213)
|+-++..+.+.. +-...+| +++|-++.| .+ .... ......++++..+-|+-..+...
T Consensus 78 g~~~~~~~~~~~--~~~~~~p-~VlDADaL~-----~l---~~~~---~~~~~~~IlTPH~gE~~rL~~~~ 134 (242)
T PF01256_consen 78 GRDEETEELLEE--LLESDKP-LVLDADALN-----LL---AENP---KKRNAPVILTPHPGEFARLLGKS 134 (242)
T ss_dssp SSSHHHHHHHHH--HHHHCST-EEEECHHHH-----CH---HHCC---CCSSSCEEEE-BHHHHHHHHTTT
T ss_pred CCchhhHHHHHH--HHhhcce-EEEehHHHH-----HH---Hhcc---ccCCCCEEECCCHHHHHHHhCCc
Confidence 555554433321 1123678 556654332 11 1111 33445677888888887766543
No 150
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=37.79 E-value=1.9e+02 Score=25.38 Aligned_cols=72 Identities=13% Similarity=0.214 Sum_probs=42.5
Q ss_pred HHHHHHhcCeEEEecC--CCCcHHHHHHHHHHHHhCCCCCceEEEe-cCccchHHHHHHHHHHHcCCCCccccCcEEEcC
Q 028138 98 KAEMARQADAFIALPG--GYGTLEELLEVITWAQLGIHRKPVGLLN-VDGFYNSLLSFVDKAVDEGFISPTARRIIISAP 174 (213)
Q Consensus 98 ~~~l~~~sDa~IvlpG--G~GTL~Ei~~~~~~~~lg~~~kPiill~-~~g~~~~l~~~l~~~~~~g~i~~~~~~~i~~~~ 174 (213)
...+...+|++|.-.- |+| .=+.|++. .++||+..+ .+| ... ++.+ .....+.-..
T Consensus 251 ~~~~~~~~d~~v~~s~~Egf~--~~~lEAma------~G~Pvv~s~~~~g-~~e-------iv~~-----~~~G~lv~~~ 309 (359)
T PRK09922 251 VQQKIKNVSALLLTSKFEGFP--MTLLEAMS------YGIPCISSDCMSG-PRD-------IIKP-----GLNGELYTPG 309 (359)
T ss_pred HHHHHhcCcEEEECCcccCcC--hHHHHHHH------cCCCEEEeCCCCC-hHH-------HccC-----CCceEEECCC
Confidence 3334567888885433 333 23556654 579999988 443 322 2211 1223344568
Q ss_pred CHHHHHHHHHhhcCCC
Q 028138 175 TAKKLVRQLEEYVPEH 190 (213)
Q Consensus 175 ~~ee~~~~l~~~~~~~ 190 (213)
|++++.+.|.++....
T Consensus 310 d~~~la~~i~~l~~~~ 325 (359)
T PRK09922 310 NIDEFVGKLNKVISGE 325 (359)
T ss_pred CHHHHHHHHHHHHhCc
Confidence 9999999999875543
No 151
>cd07227 Pat_Fungal_NTE1 Fungal patatin-like phospholipase domain containing protein 6. These are fungal Neuropathy Target Esterase (NTE), commonly referred to as NTE1. Patatin-like phospholipase. NTE has at least two functional domains: the N-terminal domain putatively regulatory domain and the C-terminal catalytic domain which shows esterase activity. NTE shows phospholipase activity for lysophosphatidylcholine (LPC) and phosphatidylcholine (PC). Exposure of NTE to organophosphates leads to organophosphate-induced delayed neurotoxicity (OPIDN). OPIDN is a progressive neurological condition that is characterized by weakness, paralysis, pain, and paresthesia. This family includes NTE1 from fungi.
Probab=37.75 E-value=25 Score=30.91 Aligned_cols=29 Identities=31% Similarity=0.628 Sum_probs=23.2
Q ss_pred HHHHHHHCCCeEEEcCCCcChhHHHHHHHHh
Q 028138 32 LGKELVERKLDLVYGGGSVGLMGLVSQAVHD 62 (213)
Q Consensus 32 lG~~lA~~G~~lv~GGg~~GlM~a~~~ga~~ 62 (213)
|+|.|+.+...||.+|| |.=++++-|+++
T Consensus 2 lar~l~g~~igLVL~GG--GaRG~ahiGVL~ 30 (269)
T cd07227 2 LARRLCGQAIGLVLGGG--GARGISHIGILQ 30 (269)
T ss_pred hhhHhcCCCEEEEECCc--HHHHHHHHHHHH
Confidence 67888888889998886 777777777765
No 152
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=37.66 E-value=1.1e+02 Score=26.68 Aligned_cols=68 Identities=26% Similarity=0.416 Sum_probs=40.6
Q ss_pred HHHHhcCeEEEe--cCCCCcHHHHHHHHHHHHhCCCCCceEEEecCccchHHHHHHHHHHHcCCCCccccCcEEEcCCHH
Q 028138 100 EMARQADAFIAL--PGGYGTLEELLEVITWAQLGIHRKPVGLLNVDGFYNSLLSFVDKAVDEGFISPTARRIIISAPTAK 177 (213)
Q Consensus 100 ~l~~~sDa~Ivl--pGG~GTL~Ei~~~~~~~~lg~~~kPiill~~~g~~~~l~~~l~~~~~~g~i~~~~~~~i~~~~~~e 177 (213)
.++..||++|.. ..|+|. =+.|++. .++||+.-+.+| ...+ +.++ ....+.-.+|++
T Consensus 268 ~~~~~adi~v~pS~~Eg~~~--~~lEAma------~G~Pvv~s~~~g-~~e~-------i~~~-----~~g~~~~~~d~~ 326 (374)
T TIGR03088 268 ALMQALDLFVLPSLAEGISN--TILEAMA------SGLPVIATAVGG-NPEL-------VQHG-----VTGALVPPGDAV 326 (374)
T ss_pred HHHHhcCEEEeccccccCch--HHHHHHH------cCCCEEEcCCCC-cHHH-------hcCC-----CceEEeCCCCHH
Confidence 356789987743 244444 3566664 579999887654 2222 1121 223344467899
Q ss_pred HHHHHHHhhcC
Q 028138 178 KLVRQLEEYVP 188 (213)
Q Consensus 178 e~~~~l~~~~~ 188 (213)
++.+.|.++..
T Consensus 327 ~la~~i~~l~~ 337 (374)
T TIGR03088 327 ALARALQPYVS 337 (374)
T ss_pred HHHHHHHHHHh
Confidence 99988887643
No 153
>PRK06703 flavodoxin; Provisional
Probab=37.62 E-value=44 Score=25.94 Aligned_cols=33 Identities=18% Similarity=0.179 Sum_probs=20.7
Q ss_pred CceEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCeE
Q 028138 8 FKRICVFCGSSSGKKATYQEAAVELGKELVERKLDL 43 (213)
Q Consensus 8 ~~~I~V~ggs~~~~~~~~~~~A~~lG~~lA~~G~~l 43 (213)
|++|.|+.+|..++.. ..|+.+++.|.+.|+.+
T Consensus 1 mmkv~IiY~S~tGnT~---~iA~~ia~~l~~~g~~v 33 (151)
T PRK06703 1 MAKILIAYASMSGNTE---DIADLIKVSLDAFDHEV 33 (151)
T ss_pred CCeEEEEEECCCchHH---HHHHHHHHHHHhcCCce
Confidence 3466666677766333 34677777777666654
No 154
>COG0252 AnsB L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D [Amino acid transport and metabolism / Translation, ribosomal structure and biogenesis]
Probab=37.40 E-value=57 Score=29.94 Aligned_cols=34 Identities=26% Similarity=0.283 Sum_probs=27.2
Q ss_pred CeEEEecCCCCcHHHHHHHHHHHHhCCCCCceEEEec
Q 028138 106 DAFIALPGGYGTLEELLEVITWAQLGIHRKPVGLLNV 142 (213)
Q Consensus 106 Da~IvlpGG~GTL~Ei~~~~~~~~lg~~~kPiill~~ 142 (213)
|+|||..| .-||+|-...+.++-- .+|||||.+.
T Consensus 102 dGvVItHG-TDTmeeTA~~L~l~l~--~~kPVVlTGa 135 (351)
T COG0252 102 DGVVITHG-TDTMEETAFFLSLTLN--TPKPVVLTGA 135 (351)
T ss_pred CeEEEeCC-CchHHHHHHHHHHHhc--CCCCEEEeCC
Confidence 88888874 7999999998887542 3899999864
No 155
>PRK08862 short chain dehydrogenase; Provisional
Probab=37.37 E-value=1.6e+02 Score=24.30 Aligned_cols=54 Identities=7% Similarity=-0.025 Sum_probs=29.6
Q ss_pred ceEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEcCCCcChhHHHHHHHHhcCCeEEEE
Q 028138 9 KRICVFCGSSSGKKATYQEAAVELGKELVERKLDLVYGGGSVGLMGLVSQAVHDGGRHVLGV 70 (213)
Q Consensus 9 ~~I~V~ggs~~~~~~~~~~~A~~lG~~lA~~G~~lv~GGg~~GlM~a~~~ga~~~gG~viGv 70 (213)
+++.|.|+|+ + ..+++++.|+++|+.|+.-+-...-.+.+.+...+.++.+..+
T Consensus 6 k~~lVtGas~-G-------IG~aia~~la~~G~~V~~~~r~~~~l~~~~~~i~~~~~~~~~~ 59 (227)
T PRK08862 6 SIILITSAGS-V-------LGRTISCHFARLGATLILCDQDQSALKDTYEQCSALTDNVYSF 59 (227)
T ss_pred eEEEEECCcc-H-------HHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCCeEEE
Confidence 4677776664 2 3566777788888887754433222233333333445444443
No 156
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=37.37 E-value=98 Score=26.07 Aligned_cols=69 Identities=19% Similarity=0.271 Sum_probs=38.1
Q ss_pred HHHHHhcCeEEEecC--CCCcHHHHHHHHHHHHhCCCCCceEEEecCccchHHHHHHHHHHHcCCCCccccCcEEEcCCH
Q 028138 99 AEMARQADAFIALPG--GYGTLEELLEVITWAQLGIHRKPVGLLNVDGFYNSLLSFVDKAVDEGFISPTARRIIISAPTA 176 (213)
Q Consensus 99 ~~l~~~sDa~IvlpG--G~GTL~Ei~~~~~~~~lg~~~kPiill~~~g~~~~l~~~l~~~~~~g~i~~~~~~~i~~~~~~ 176 (213)
..++..||++|.-.. |.|. =++|+++ .++||+..+..+.- . .++ +.....+.-.+|.
T Consensus 261 ~~~~~~~d~~l~~s~~e~~~~--~~lEa~a------~g~PvI~~~~~~~~-~---~i~---------~~~~g~~~~~~~~ 319 (364)
T cd03814 261 AAAYASADVFVFPSRTETFGL--VVLEAMA------SGLPVVAPDAGGPA-D---IVT---------DGENGLLVEPGDA 319 (364)
T ss_pred HHHHHhCCEEEECcccccCCc--HHHHHHH------cCCCEEEcCCCCch-h---hhc---------CCcceEEcCCCCH
Confidence 346688998764322 2232 2556664 57999987754322 1 111 1122334456677
Q ss_pred HHHHHHHHhhcC
Q 028138 177 KKLVRQLEEYVP 188 (213)
Q Consensus 177 ee~~~~l~~~~~ 188 (213)
+++.+.|.+...
T Consensus 320 ~~l~~~i~~l~~ 331 (364)
T cd03814 320 EAFAAALAALLA 331 (364)
T ss_pred HHHHHHHHHHHc
Confidence 777777776543
No 157
>PRK05333 NAD-dependent deacetylase; Provisional
Probab=37.21 E-value=56 Score=28.73 Aligned_cols=73 Identities=12% Similarity=0.096 Sum_probs=45.7
Q ss_pred HHHHHHHHHhcCeEEEecCCCCcHHHHHHHHHHHHh-CCCCCceEEEecCcc-chHHHHHHHHHHHcCCCCccccCcEEE
Q 028138 95 HQRKAEMARQADAFIALPGGYGTLEELLEVITWAQL-GIHRKPVGLLNVDGF-YNSLLSFVDKAVDEGFISPTARRIIIS 172 (213)
Q Consensus 95 ~~R~~~l~~~sDa~IvlpGG~GTL~Ei~~~~~~~~l-g~~~kPiill~~~g~-~~~l~~~l~~~~~~g~i~~~~~~~i~~ 172 (213)
..|....++.+|.+|+ +||--.+.-+..+.+. ..++.|++++|.+.. ++. .--+.+
T Consensus 205 ~~~a~~~~~~~Dlllv----vGTSl~V~p~~~~~~~a~~~g~~~i~IN~~~t~~~~------------------~~~~~i 262 (285)
T PRK05333 205 VAAARAALDAADAVLV----VGSSLMVYSGYRFCVWAAQQGKPIAALNLGRTRADP------------------LLTLKV 262 (285)
T ss_pred HHHHHHHHhcCCEEEE----ECcCceecchhhhHHHHHHCCCeEEEECCCCCCCCc------------------ceeEEE
Confidence 3555556778998888 5665555433332222 235679999997521 111 013678
Q ss_pred cCCHHHHHHHHHhhcCC
Q 028138 173 APTAKKLVRQLEEYVPE 189 (213)
Q Consensus 173 ~~~~ee~~~~l~~~~~~ 189 (213)
..+..+++..|.+....
T Consensus 263 ~g~~~evL~~l~~~l~~ 279 (285)
T PRK05333 263 EASCAQALAALVARLGL 279 (285)
T ss_pred eCCHHHHHHHHHHHhCC
Confidence 88999999999775443
No 158
>PRK12359 flavodoxin FldB; Provisional
Probab=37.10 E-value=91 Score=25.46 Aligned_cols=20 Identities=20% Similarity=0.323 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHCCCeEE
Q 028138 25 YQEAAVELGKELVERKLDLV 44 (213)
Q Consensus 25 ~~~~A~~lG~~lA~~G~~lv 44 (213)
|...+..|-+.|.+.|..+|
T Consensus 97 f~~a~~~l~~~l~~~Ga~iv 116 (172)
T PRK12359 97 FLDALGMLHDKLAPKGVKFV 116 (172)
T ss_pred HHHHHHHHHHHHHhCCCeEE
Confidence 34444444444444444443
No 159
>cd00587 HCP_like The HCP family of iron-sulfur proteins includes hybrid cluster protein (HCP), acetyl-CoA synthase (ACS), and carbon monoxide dehydrogenase (CODH), all of which contain [Fe4-S4] metal clusters at their active sites. These proteins have a conserved alpha-beta rossman fold domain. HCP, formerly known as prismane, is thought to play a role in nitrogen metabolism but its specific function is unknown. Acetyl-CoA synthase (ACS), is found in acetogenic and methanogenic organisms and is responsible for the synthesis and breakdown of acetyl-CoA. ACS forms a heterotetramer with carbon monoxide dehydrogenase (CODH) consisting of two ACS and two CODH subunits. CODH reduces carbon dioxide to carbon monoxide and ACS then synthesizes acetyl-CoA from carbon monoxide and CoA.
Probab=36.97 E-value=51 Score=29.02 Aligned_cols=41 Identities=20% Similarity=0.371 Sum_probs=30.6
Q ss_pred cCCceEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEcCC
Q 028138 6 SRFKRICVFCGSSSGKKATYQEAAVELGKELVERKLDLVYGGG 48 (213)
Q Consensus 6 ~~~~~I~V~ggs~~~~~~~~~~~A~~lG~~lA~~G~~lv~GGg 48 (213)
-+++.|++++|..... .+.+...++.+.|-++++-+++.|+
T Consensus 92 G~I~Gv~~ivGC~n~~--~~~~~~~~iakeL~k~d~LVlt~GC 132 (258)
T cd00587 92 GTIPGVALIVGCNNDK--KQDKAYADIAKELMKRGVMVLATGC 132 (258)
T ss_pred CCCCeEEEEEeCCCCC--ccchHHHHHHHHHHhCCEEEEecch
Confidence 3677888888876542 3444567899999999999888775
No 160
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=36.75 E-value=80 Score=26.97 Aligned_cols=52 Identities=13% Similarity=0.151 Sum_probs=34.1
Q ss_pred CceEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEcCCCcChhHHHHHHHHhcCCeEEEE
Q 028138 8 FKRICVFCGSSSGKKATYQEAAVELGKELVERKLDLVYGGGSVGLMGLVSQAVHDGGRHVLGV 70 (213)
Q Consensus 8 ~~~I~V~ggs~~~~~~~~~~~A~~lG~~lA~~G~~lv~GGg~~GlM~a~~~ga~~~gG~viGv 70 (213)
||+|+++| ... .-..|++.+++.||.++.|+. .-.++....+.+.+..++|.
T Consensus 1 m~~~~i~G-tGn--------iG~alA~~~a~ag~eV~igs~--r~~~~~~a~a~~l~~~i~~~ 52 (211)
T COG2085 1 MMIIAIIG-TGN--------IGSALALRLAKAGHEVIIGSS--RGPKALAAAAAALGPLITGG 52 (211)
T ss_pred CcEEEEec-cCh--------HHHHHHHHHHhCCCeEEEecC--CChhHHHHHHHhhccccccC
Confidence 56788884 432 335688999999999999875 34555555555555554443
No 161
>cd04180 UGPase_euk_like Eukaryotic UGPase-like includes UDPase and UDPGlcNAc pyrophosphorylase enzymes. This family includes UDP-Glucose Pyrophosphorylase (UDPase) and UDPGlcNAc pyrophosphorylase enzymes. The two enzymes share significant sequence and structure similarity. UDP-Glucose Pyrophosphorylase catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from Glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans . UDP-N-acetylglucosamine (UDPGlcNAc) pyrophosphorylase (UAP) (also named GlcNAc1P uridyltransferase), catalyzes the reversible conversion of UTP and GlcNAc1P from PPi and UDPGlcNAc, which is a key precursor of N- and O-linked glycosylations and is essential for the synthesis of chitin (a major component of the fungal cell wall) and of the glycosylphosphatidylinositol (GPI) linker anchoring a variety o
Probab=36.50 E-value=1e+02 Score=26.80 Aligned_cols=69 Identities=20% Similarity=0.092 Sum_probs=37.1
Q ss_pred eEEEecCCCCcHHHHHHHHHHHHhCC-CCCceEEEe---cCccchHHHHHHHHHHHcCCCCccccCcE--EEcCCHHHHH
Q 028138 107 AFIALPGGYGTLEELLEVITWAQLGI-HRKPVGLLN---VDGFYNSLLSFVDKAVDEGFISPTARRII--ISAPTAKKLV 180 (213)
Q Consensus 107 a~IvlpGG~GTL~Ei~~~~~~~~lg~-~~kPiill~---~~g~~~~l~~~l~~~~~~g~i~~~~~~~i--~~~~~~ee~~ 180 (213)
|+|+|-||.|| ++|. .+||.+=+. ..-+.+-..+.+..+... .-.......+ ...++.++..
T Consensus 2 a~viLaGG~Gt-----------RLg~~~PK~~~~i~~~~gk~~l~~~~~~i~~~~~~-~~~~~~Ip~~imts~~t~~~t~ 69 (266)
T cd04180 2 AVVLLAGGLGT-----------RLGKDGPKSSTDVGLPSGQCFLQLIGEKILTLQEI-DLYSCKIPEQLMNSKYTHEKTQ 69 (266)
T ss_pred EEEEECCCCcc-----------ccCCCCCceeeeecCCCCCcHHHHHHHHHHHHHHH-hhcCCCCCEEEEcCchhHHHHH
Confidence 68999999999 3353 467666444 333666666655543210 0000111222 2234566778
Q ss_pred HHHHhhc
Q 028138 181 RQLEEYV 187 (213)
Q Consensus 181 ~~l~~~~ 187 (213)
+++++..
T Consensus 70 ~~l~~~~ 76 (266)
T cd04180 70 CYFEKIN 76 (266)
T ss_pred HHHHHcC
Confidence 8887754
No 162
>PRK09355 hydroxyethylthiazole kinase; Validated
Probab=36.18 E-value=1.8e+02 Score=25.02 Aligned_cols=41 Identities=32% Similarity=0.388 Sum_probs=23.1
Q ss_pred HHHhcCeEEEecCCCCcHHHHHH--HHHHHH-hCCCCCceEEEecCcc
Q 028138 101 MARQADAFIALPGGYGTLEELLE--VITWAQ-LGIHRKPVGLLNVDGF 145 (213)
Q Consensus 101 l~~~sDa~IvlpGG~GTL~Ei~~--~~~~~~-lg~~~kPiill~~~g~ 145 (213)
+...+|++++ +.||+.+-.. +....+ ...+++|+ +++..+.
T Consensus 51 ~~~~~~alvi---~~G~l~~~~~~~i~~~~~~a~~~~~pv-VlDpv~~ 94 (263)
T PRK09355 51 MAKIAGALVI---NIGTLTEERIEAMLAAGKIANEAGKPV-VLDPVGV 94 (263)
T ss_pred HHHhcCceEE---eCCCCCHHHHHHHHHHHHHHHhcCCCE-EECCccc
Confidence 4578899999 5555554322 222211 23457896 4687664
No 163
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=36.15 E-value=2e+02 Score=24.27 Aligned_cols=107 Identities=16% Similarity=0.142 Sum_probs=59.1
Q ss_pred CceEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCeEE--EcCCCcChhHHHHHHHHhcCCeEEEEeCCCCCCCCCC---C
Q 028138 8 FKRICVFCGSSSGKKATYQEAAVELGKELVERKLDLV--YGGGSVGLMGLVSQAVHDGGRHVLGVIPKTLTPREIT---G 82 (213)
Q Consensus 8 ~~~I~V~ggs~~~~~~~~~~~A~~lG~~lA~~G~~lv--~GGg~~GlM~a~~~ga~~~gG~viGv~P~~~~~~e~~---~ 82 (213)
.+.|+|+=+. ++ +.|.++++.|.+.|+.++ |=-.+ +..++..+-..+.....||.=. .. ..++. .
T Consensus 8 ~~liaVlr~~----~~---e~a~~~~~al~~~Gi~~iEit~~t~-~a~~~i~~l~~~~~~~~vGAGT-Vl-~~~~a~~a~ 77 (204)
T TIGR01182 8 AKIVPVIRID----DV---DDALPLAKALIEGGLRVLEVTLRTP-VALDAIRLLRKEVPDALIGAGT-VL-NPEQLRQAV 77 (204)
T ss_pred CCEEEEEecC----CH---HHHHHHHHHHHHcCCCEEEEeCCCc-cHHHHHHHHHHHCCCCEEEEEe-CC-CHHHHHHHH
Confidence 3567777221 22 356788888999888774 33334 6777666655555666677621 11 11110 1
Q ss_pred CCCceeeecCCHHHHHHHHHHhcCeEEEecCCCCcHHHHHHHHH
Q 028138 83 DPVGEVKTVSDMHQRKAEMARQADAFIALPGGYGTLEELLEVIT 126 (213)
Q Consensus 83 ~~~~~~~~~~~~~~R~~~l~~~sDa~IvlpGG~GTL~Ei~~~~~ 126 (213)
+--.+.++.+++. +...-...-..+..+| |.-|..|+..++.
T Consensus 78 ~aGA~FivsP~~~-~~v~~~~~~~~i~~iP-G~~TptEi~~A~~ 119 (204)
T TIGR01182 78 DAGAQFIVSPGLT-PELAKHAQDHGIPIIP-GVATPSEIMLALE 119 (204)
T ss_pred HcCCCEEECCCCC-HHHHHHHHHcCCcEEC-CCCCHHHHHHHHH
Confidence 1112445555552 2222222333567777 6788889888885
No 164
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=36.13 E-value=1.8e+02 Score=25.54 Aligned_cols=26 Identities=19% Similarity=0.378 Sum_probs=15.4
Q ss_pred EEEcCCCcChhHHHHHHHHhcCCeEEEE
Q 028138 43 LVYGGGSVGLMGLVSQAVHDGGRHVLGV 70 (213)
Q Consensus 43 lv~GGg~~GlM~a~~~ga~~~gG~viGv 70 (213)
+|.-||. |.|-.+++ ....+-.++||
T Consensus 61 vi~iGGD-GTlL~a~~-~~~~~~pi~gI 86 (277)
T PRK03708 61 IIAIGGD-GTILRIEH-KTKKDIPILGI 86 (277)
T ss_pred EEEEeCc-HHHHHHHH-hcCCCCeEEEE
Confidence 3444565 86665555 55556666776
No 165
>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=35.90 E-value=85 Score=27.83 Aligned_cols=107 Identities=21% Similarity=0.277 Sum_probs=62.3
Q ss_pred CCceEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEcCCCcChhHHHHHHHHhcCCeEEEEeCCCCCCCCCCCCCCc
Q 028138 7 RFKRICVFCGSSSGKKATYQEAAVELGKELVERKLDLVYGGGSVGLMGLVSQAVHDGGRHVLGVIPKTLTPREITGDPVG 86 (213)
Q Consensus 7 ~~~~I~V~ggs~~~~~~~~~~~A~~lG~~lA~~G~~lv~GGg~~GlM~a~~~ga~~~gG~viGv~P~~~~~~e~~~~~~~ 86 (213)
.+++|+|+. +.. +.-.+.+.++.++|.++|+.++.--.. +... +. +. +
T Consensus 9 ~~~~i~ii~--~~~--~~~~~~~~~i~~~l~~~g~~~~~~~~~----------~~~~-----~~-~~-----------~- 56 (287)
T PRK14077 9 NIKKIGLVT--RPN--VSLDKEILKLQKILSIYKVEILLEKES----------AEIL-----DL-PG-----------Y- 56 (287)
T ss_pred cCCEEEEEe--CCc--HHHHHHHHHHHHHHHHCCCEEEEecch----------hhhh-----cc-cc-----------c-
Confidence 466799993 332 355678899999999999988864311 1110 00 00 0
Q ss_pred eeeecCCHHHHHHHHHHhcCeEEEecCCCCcHHHHHHHHHHHHhCCCCCceEEEecC--ccc-----hHHHHHHHHHHHc
Q 028138 87 EVKTVSDMHQRKAEMARQADAFIALPGGYGTLEELLEVITWAQLGIHRKPVGLLNVD--GFY-----NSLLSFVDKAVDE 159 (213)
Q Consensus 87 ~~~~~~~~~~R~~~l~~~sDa~IvlpGG~GTL~Ei~~~~~~~~lg~~~kPiill~~~--g~~-----~~l~~~l~~~~~~ 159 (213)
.+ .. +.+.+|.+|++ ||=||+--.+..+ ...++||+-+|.+ ||. +.+.+.++++.+.
T Consensus 57 ------~~---~~-~~~~~Dlvi~i-GGDGT~L~aa~~~-----~~~~~PilGIN~G~lGFLt~~~~~~~~~~l~~i~~g 120 (287)
T PRK14077 57 ------GL---DE-LFKISDFLISL-GGDGTLISLCRKA-----AEYDKFVLGIHAGHLGFLTDITVDEAEKFFQAFFQG 120 (287)
T ss_pred ------ch---hh-cccCCCEEEEE-CCCHHHHHHHHHh-----cCCCCcEEEEeCCCcccCCcCCHHHHHHHHHHHHcC
Confidence 00 00 11246765554 7889976555433 2357899888865 465 5566667766654
Q ss_pred CC
Q 028138 160 GF 161 (213)
Q Consensus 160 g~ 161 (213)
.|
T Consensus 121 ~y 122 (287)
T PRK14077 121 EF 122 (287)
T ss_pred CC
Confidence 44
No 166
>PTZ00032 60S ribosomal protein L18; Provisional
Probab=35.67 E-value=71 Score=27.21 Aligned_cols=38 Identities=24% Similarity=0.343 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHH----CCCeEE-E--cCCC-cChhHHHHHHHHhcC
Q 028138 27 EAAVELGKELVE----RKLDLV-Y--GGGS-VGLMGLVSQAVHDGG 64 (213)
Q Consensus 27 ~~A~~lG~~lA~----~G~~lv-~--GGg~-~GlM~a~~~ga~~~g 64 (213)
+.|+++|+.||+ .|+.=| + ||.. -|-++|.++||+++|
T Consensus 163 eaA~~VGk~IAerAl~kGI~kVvFDRgGy~YHGRVkALAdaARe~G 208 (211)
T PTZ00032 163 KAAYELGKLIGRKALSKGISKVRFDRAHYKYAGKVEALAEGARAVG 208 (211)
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEeCCCCeehhHHHHHHHHHHHcC
Confidence 578889998888 465443 2 3332 589999999999987
No 167
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=35.30 E-value=78 Score=23.84 Aligned_cols=31 Identities=19% Similarity=0.175 Sum_probs=17.9
Q ss_pred ceEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCeEE
Q 028138 9 KRICVFCGSSSGKKATYQEAAVELGKELVERKLDLV 44 (213)
Q Consensus 9 ~~I~V~ggs~~~~~~~~~~~A~~lG~~lA~~G~~lv 44 (213)
++|+|+|.|..... .++.+-+.|.++|+.++
T Consensus 1 ksiAVvGaS~~~~~-----~g~~v~~~l~~~G~~v~ 31 (116)
T PF13380_consen 1 KSIAVVGASDNPGK-----FGYRVLRNLKAAGYEVY 31 (116)
T ss_dssp -EEEEET--SSTTS-----HHHHHHHHHHHTT-EEE
T ss_pred CEEEEEcccCCCCC-----hHHHHHHHHHhCCCEEE
Confidence 47999987764322 24566677777888765
No 168
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=35.26 E-value=1.5e+02 Score=25.53 Aligned_cols=68 Identities=21% Similarity=0.310 Sum_probs=39.6
Q ss_pred HHHHHhcCeEEEecC---------CCCcHHHHHHHHHHHHhCCCCCceEEEecCccchHHHHHHHHHHHcCCCCccccCc
Q 028138 99 AEMARQADAFIALPG---------GYGTLEELLEVITWAQLGIHRKPVGLLNVDGFYNSLLSFVDKAVDEGFISPTARRI 169 (213)
Q Consensus 99 ~~l~~~sDa~IvlpG---------G~GTL~Ei~~~~~~~~lg~~~kPiill~~~g~~~~l~~~l~~~~~~g~i~~~~~~~ 169 (213)
..++..||++|. |. |+|+ =++|++. .++||+.-+..+.- ++ +.......
T Consensus 259 ~~~~~~ad~~v~-ps~~~~~~~~E~~~~--~~~EA~a------~G~PvI~s~~~~~~----e~---------i~~~~~g~ 316 (367)
T cd05844 259 RELMRRARIFLQ-PSVTAPSGDAEGLPV--VLLEAQA------SGVPVVATRHGGIP----EA---------VEDGETGL 316 (367)
T ss_pred HHHHHhCCEEEE-CcccCCCCCccCCch--HHHHHHH------cCCCEEEeCCCCch----hh---------eecCCeeE
Confidence 346688998765 32 2232 3566664 57999987765421 11 11112223
Q ss_pred EEEcCCHHHHHHHHHhhcC
Q 028138 170 IISAPTAKKLVRQLEEYVP 188 (213)
Q Consensus 170 i~~~~~~ee~~~~l~~~~~ 188 (213)
+.-.+|++++.+.|.+...
T Consensus 317 ~~~~~d~~~l~~~i~~l~~ 335 (367)
T cd05844 317 LVPEGDVAALAAALGRLLA 335 (367)
T ss_pred EECCCCHHHHHHHHHHHHc
Confidence 3335689999888887654
No 169
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=35.22 E-value=1.6e+02 Score=26.08 Aligned_cols=63 Identities=19% Similarity=0.259 Sum_probs=35.8
Q ss_pred cHHHHHHHHHHHHhCCCCCceEEEecCc--cchHHHHHHHHHHHcCCCCccccCcEEEcCCHHHHHHHHHh
Q 028138 117 TLEELLEVITWAQLGIHRKPVGLLNVDG--FYNSLLSFVDKAVDEGFISPTARRIIISAPTAKKLVRQLEE 185 (213)
Q Consensus 117 TL~Ei~~~~~~~~lg~~~kPiill~~~g--~~~~l~~~l~~~~~~g~i~~~~~~~i~~~~~~ee~~~~l~~ 185 (213)
|++..++.+.-..-.....|++++..-+ |+.++.+|++.+.+.|. +-+.+.|=|-|--+.+.+
T Consensus 77 t~~~~lel~~~~r~~~~~~Pivlm~Y~Npi~~~Gie~F~~~~~~~Gv------dGlivpDLP~ee~~~~~~ 141 (265)
T COG0159 77 TLEDTLELVEEIRAKGVKVPIVLMTYYNPIFNYGIEKFLRRAKEAGV------DGLLVPDLPPEESDELLK 141 (265)
T ss_pred CHHHHHHHHHHHHhcCCCCCEEEEEeccHHHHhhHHHHHHHHHHcCC------CEEEeCCCChHHHHHHHH
Confidence 5666666664322122457999995221 34456667777776664 335566666555554444
No 170
>smart00046 DAGKc Diacylglycerol kinase catalytic domain (presumed). Diacylglycerol (DAG) is a second messenger that acts as a protein kinase C activator. DAG can be produced from the hydrolysis of phosphatidylinositol 4,5-bisphosphate (PIP2) by a phosphoinositide-specific phospholipase C and by the degradation of phosphatidylcholine (PC) by a phospholipase C or the concerted actions of phospholipase D and phosphatidate phosphohydrolase. This domain is presumed to be the catalytic domain. Bacterial homologues areknown.
Probab=35.06 E-value=82 Score=23.82 Aligned_cols=31 Identities=26% Similarity=0.441 Sum_probs=22.5
Q ss_pred eEEEcCCCcChhHHHHHHHHhcCC----eEEEEeCC
Q 028138 42 DLVYGGGSVGLMGLVSQAVHDGGR----HVLGVIPK 73 (213)
Q Consensus 42 ~lv~GGg~~GlM~a~~~ga~~~gG----~viGv~P~ 73 (213)
.||..||. |....+..+...... ..+|++|.
T Consensus 52 ~vvv~GGD-GTi~~vvn~l~~~~~~~~~~plgiiP~ 86 (124)
T smart00046 52 RVLVCGGD-GTVGWVLNALDKRELPLPEPPVAVLPL 86 (124)
T ss_pred EEEEEccc-cHHHHHHHHHHhcccccCCCcEEEeCC
Confidence 45556665 988888888876553 46899885
No 171
>PRK06973 nicotinic acid mononucleotide adenylyltransferase; Provisional
Probab=35.03 E-value=64 Score=27.91 Aligned_cols=32 Identities=19% Similarity=0.105 Sum_probs=24.3
Q ss_pred CCceEEEEcCCCCCCCHHHHHHHHHHHHHHHH
Q 028138 7 RFKRICVFCGSSSGKKATYQEAAVELGKELVE 38 (213)
Q Consensus 7 ~~~~I~V~ggs~~~~~~~~~~~A~~lG~~lA~ 38 (213)
+.++|||||||=....--+...|+++-+.+.-
T Consensus 20 ~~~~IgifGGSFdPiH~GHl~ia~~~~~~l~l 51 (243)
T PRK06973 20 RPRRIGILGGTFDPIHDGHLALARRFADVLDL 51 (243)
T ss_pred CCceEEEECCCCCCCcHHHHHHHHHHHHHcCC
Confidence 34579999999877777787788777776643
No 172
>PRK01966 ddl D-alanyl-alanine synthetase A; Reviewed
Probab=34.65 E-value=68 Score=28.54 Aligned_cols=36 Identities=22% Similarity=0.300 Sum_probs=28.1
Q ss_pred ceEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCeEE
Q 028138 9 KRICVFCGSSSGKKATYQEAAVELGKELVERKLDLV 44 (213)
Q Consensus 9 ~~I~V~ggs~~~~~~~~~~~A~~lG~~lA~~G~~lv 44 (213)
++|+|.+|......+.=...|+.+.+.|.+.||.++
T Consensus 4 ~~i~vl~GG~S~E~~vSl~s~~~v~~~l~~~~~~~~ 39 (333)
T PRK01966 4 MRVALLFGGRSAEHEVSLVSAKSVLKALDKEKYEVV 39 (333)
T ss_pred cEEEEEeCCCCCcchhhHHHHHHHHHHhcccCCEEE
Confidence 468888777665566555789999999999999885
No 173
>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1.5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction NAD(P)H + FMN = NAD(P)(+) + FMNH(2).; PDB: 3SVL_B 3GFS_F 3GFQ_A 1NNI_1 2GSW_B 3GFR_D 1T0I_B 3D7N_A 2R97_A 3B6K_A ....
Probab=34.64 E-value=83 Score=24.08 Aligned_cols=34 Identities=21% Similarity=0.279 Sum_probs=20.2
Q ss_pred ceEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCeE
Q 028138 9 KRICVFCGSSSGKKATYQEAAVELGKELVERKLDL 43 (213)
Q Consensus 9 ~~I~V~ggs~~~~~~~~~~~A~~lG~~lA~~G~~l 43 (213)
|+|.|+.||...+.... ..|+.+.+.+.+.|+.+
T Consensus 1 Mkilii~gS~r~~~~t~-~l~~~~~~~l~~~g~e~ 34 (152)
T PF03358_consen 1 MKILIINGSPRKNSNTR-KLAEAVAEQLEEAGAEV 34 (152)
T ss_dssp -EEEEEESSSSTTSHHH-HHHHHHHHHHHHTTEEE
T ss_pred CEEEEEECcCCCCCHHH-HHHHHHHHHHHHcCCEE
Confidence 35666666654333333 56777777777776555
No 174
>PRK14571 D-alanyl-alanine synthetase A; Provisional
Probab=34.60 E-value=80 Score=27.41 Aligned_cols=35 Identities=14% Similarity=0.260 Sum_probs=26.3
Q ss_pred eEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCeEE
Q 028138 10 RICVFCGSSSGKKATYQEAAVELGKELVERKLDLV 44 (213)
Q Consensus 10 ~I~V~ggs~~~~~~~~~~~A~~lG~~lA~~G~~lv 44 (213)
+|+|.+|......+.=...++++-+.|.+.||.++
T Consensus 2 ~v~v~~gg~s~e~~~sl~s~~~i~~al~~~g~~~~ 36 (299)
T PRK14571 2 RVALLMGGVSREREISLRSGERVKKALEKLGYEVT 36 (299)
T ss_pred eEEEEeCCCCCCccchHHHHHHHHHHHHHcCCeEE
Confidence 57777666555555545789999999999999874
No 175
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=34.50 E-value=1.7e+02 Score=25.96 Aligned_cols=72 Identities=17% Similarity=0.273 Sum_probs=41.1
Q ss_pred HHHHHHHHhcCeEEEe--cCCCCcHHHHHHHHHHHHhCCCCCceEEEecCccchHHHHHHHHHHHcCCCCccccCcEEEc
Q 028138 96 QRKAEMARQADAFIAL--PGGYGTLEELLEVITWAQLGIHRKPVGLLNVDGFYNSLLSFVDKAVDEGFISPTARRIIISA 173 (213)
Q Consensus 96 ~R~~~l~~~sDa~Ivl--pGG~GTL~Ei~~~~~~~~lg~~~kPiill~~~g~~~~l~~~l~~~~~~g~i~~~~~~~i~~~ 173 (213)
+....++..||++|.- ..|+|.. +.|++. .++||+..+..| ...+ +.++ ....+.-.
T Consensus 294 ~~~~~~l~~ad~~v~ps~~E~~g~~--~lEAma------~G~Pvi~~~~~~-~~e~-------i~~~-----~~g~~~~~ 352 (405)
T TIGR03449 294 EELVHVYRAADVVAVPSYNESFGLV--AMEAQA------CGTPVVAARVGG-LPVA-------VADG-----ETGLLVDG 352 (405)
T ss_pred HHHHHHHHhCCEEEECCCCCCcChH--HHHHHH------cCCCEEEecCCC-cHhh-------hccC-----CceEECCC
Confidence 3445577899998763 2456652 556664 479999887643 2221 1111 11112223
Q ss_pred CCHHHHHHHHHhhcC
Q 028138 174 PTAKKLVRQLEEYVP 188 (213)
Q Consensus 174 ~~~ee~~~~l~~~~~ 188 (213)
+|++++.+.|.++..
T Consensus 353 ~d~~~la~~i~~~l~ 367 (405)
T TIGR03449 353 HDPADWADALARLLD 367 (405)
T ss_pred CCHHHHHHHHHHHHh
Confidence 588888887776543
No 176
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=34.46 E-value=2.3e+02 Score=24.78 Aligned_cols=56 Identities=18% Similarity=0.291 Sum_probs=35.1
Q ss_pred ceEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCC---------eEEEcCCCcChhHHHHHHHHh--cCCeEEEE
Q 028138 9 KRICVFCGSSSGKKATYQEAAVELGKELVERKL---------DLVYGGGSVGLMGLVSQAVHD--GGRHVLGV 70 (213)
Q Consensus 9 ~~I~V~ggs~~~~~~~~~~~A~~lG~~lA~~G~---------~lv~GGg~~GlM~a~~~ga~~--~gG~viGv 70 (213)
|+|+|+ . + . ++.-.+.+.++-++|.+.|+ .++.| |. |-|=-+++-+.. .+-.++||
T Consensus 1 M~i~Ii-~-~-~-~~~~~~~~~~l~~~l~~~g~~~~~~~~Dlvi~iG-GD-GT~L~a~~~~~~~~~~iPilGI 67 (265)
T PRK04885 1 MKVAII-S-N-G-DPKSKRVASKLKKYLKDFGFILDEKNPDIVISVG-GD-GTLLSAFHRYENQLDKVRFVGV 67 (265)
T ss_pred CEEEEE-e-C-C-CHHHHHHHHHHHHHHHHcCCccCCcCCCEEEEEC-Cc-HHHHHHHHHhcccCCCCeEEEE
Confidence 358999 2 3 2 56666788889888877654 33444 55 766555554444 45566776
No 177
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=34.41 E-value=1e+02 Score=27.68 Aligned_cols=29 Identities=28% Similarity=0.338 Sum_probs=20.1
Q ss_pred CCeEEEcCCCcChhHHHHHHHHhcCC-eEEEE
Q 028138 40 KLDLVYGGGSVGLMGLVSQAVHDGGR-HVLGV 70 (213)
Q Consensus 40 G~~lv~GGg~~GlM~a~~~ga~~~gG-~viGv 70 (213)
+..+|.|.|+.|+|- ...|...|. ++|.+
T Consensus 170 ~~V~V~GaGpIGLla--~~~a~~~Ga~~Viv~ 199 (350)
T COG1063 170 GTVVVVGAGPIGLLA--IALAKLLGASVVIVV 199 (350)
T ss_pred CEEEEECCCHHHHHH--HHHHHHcCCceEEEe
Confidence 358899999999997 444555564 44444
No 178
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=34.22 E-value=1.4e+02 Score=25.97 Aligned_cols=69 Identities=17% Similarity=0.260 Sum_probs=40.0
Q ss_pred HHHhcCeEEEecC--CCCcHHHHHHHHHHHHhCCCCCceEEEecCccchHHHHHHHHHHHcCCCCccccCcEEEcCCHHH
Q 028138 101 MARQADAFIALPG--GYGTLEELLEVITWAQLGIHRKPVGLLNVDGFYNSLLSFVDKAVDEGFISPTARRIIISAPTAKK 178 (213)
Q Consensus 101 l~~~sDa~IvlpG--G~GTL~Ei~~~~~~~~lg~~~kPiill~~~g~~~~l~~~l~~~~~~g~i~~~~~~~i~~~~~~ee 178 (213)
+...||++|...- |+|. =+.|++. +++|||..+.+..-.. + +.+.....+.-..|+++
T Consensus 275 ~~~~ad~~v~~S~~Eg~~~--~~lEAma------~G~PvI~~~~~~g~~~-------~-----v~~~~~G~lv~~~d~~~ 334 (372)
T cd04949 275 VYQKAQLSLLTSQSEGFGL--SLMEALS------HGLPVISYDVNYGPSE-------I-----IEDGENGYLVPKGDIEA 334 (372)
T ss_pred HHhhhhEEEecccccccCh--HHHHHHh------CCCCEEEecCCCCcHH-------H-----cccCCCceEeCCCcHHH
Confidence 4567898887652 3442 3556664 6799999876422111 1 11122233333458999
Q ss_pred HHHHHHhhcCC
Q 028138 179 LVRQLEEYVPE 189 (213)
Q Consensus 179 ~~~~l~~~~~~ 189 (213)
+.+.|.++...
T Consensus 335 la~~i~~ll~~ 345 (372)
T cd04949 335 LAEAIIELLND 345 (372)
T ss_pred HHHHHHHHHcC
Confidence 88888876543
No 179
>PRK14568 vanB D-alanine--D-lactate ligase; Provisional
Probab=34.17 E-value=68 Score=28.68 Aligned_cols=36 Identities=17% Similarity=0.331 Sum_probs=28.8
Q ss_pred ceEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCeEE
Q 028138 9 KRICVFCGSSSGKKATYQEAAVELGKELVERKLDLV 44 (213)
Q Consensus 9 ~~I~V~ggs~~~~~~~~~~~A~~lG~~lA~~G~~lv 44 (213)
++|+|++|......+.=...|+.+.+.|.+.||.++
T Consensus 4 ~~i~vl~GG~S~E~evSl~s~~~v~~~l~~~~~~v~ 39 (343)
T PRK14568 4 IKVGILFGGCSEEHPVSVKSAIEVARNLDTEKYEPF 39 (343)
T ss_pred cEEEEEECCCCCchHHHHHhHHHHHHhhcccCCeEE
Confidence 478888777666566666789999999999999986
No 180
>KOG1718 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=33.95 E-value=42 Score=28.05 Aligned_cols=24 Identities=29% Similarity=0.632 Sum_probs=17.5
Q ss_pred CCCceEEEecCccchHHHHHHHHHH
Q 028138 133 HRKPVGLLNVDGFYNSLLSFVDKAV 157 (213)
Q Consensus 133 ~~kPiill~~~g~~~~l~~~l~~~~ 157 (213)
..+|+|==|. |||+.++++=+++.
T Consensus 133 a~RpiIRPN~-GFw~QLi~YE~qL~ 156 (198)
T KOG1718|consen 133 ARRPIIRPNV-GFWRQLIDYEQQLF 156 (198)
T ss_pred hhCceeCCCc-cHHHHHHHHHHHhc
Confidence 3589876554 89999998755553
No 181
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=33.87 E-value=1.1e+02 Score=26.15 Aligned_cols=69 Identities=16% Similarity=0.280 Sum_probs=41.7
Q ss_pred HHHHHHhcCeEEEec---CCCCcHHHHHHHHHHHHhCCCCCceEEEecCccchHHHHHHHHHHHcCCCCccccCcEEEcC
Q 028138 98 KAEMARQADAFIALP---GGYGTLEELLEVITWAQLGIHRKPVGLLNVDGFYNSLLSFVDKAVDEGFISPTARRIIISAP 174 (213)
Q Consensus 98 ~~~l~~~sDa~Ivlp---GG~GTL~Ei~~~~~~~~lg~~~kPiill~~~g~~~~l~~~l~~~~~~g~i~~~~~~~i~~~~ 174 (213)
...++..||++|.-. .|+|+ =++|++. .++|||..+..+ ...+.. ++ ....+.-.+
T Consensus 257 ~~~~l~~ad~~i~ps~~~e~~~~--~l~EA~a------~G~PvI~~~~~~-~~e~i~-------~~-----~~g~~~~~~ 315 (355)
T cd03819 257 MPAAYALADIVVSASTEPEAFGR--TAVEAQA------MGRPVIASDHGG-ARETVR-------PG-----ETGLLVPPG 315 (355)
T ss_pred HHHHHHhCCEEEecCCCCCCCch--HHHHHHh------cCCCEEEcCCCC-cHHHHh-------CC-----CceEEeCCC
Confidence 344667899987643 34553 3566664 579999887643 333221 11 123344568
Q ss_pred CHHHHHHHHHhhc
Q 028138 175 TAKKLVRQLEEYV 187 (213)
Q Consensus 175 ~~ee~~~~l~~~~ 187 (213)
|++++.+.|.+..
T Consensus 316 ~~~~l~~~i~~~~ 328 (355)
T cd03819 316 DAEALAQALDQIL 328 (355)
T ss_pred CHHHHHHHHHHHH
Confidence 9999999886543
No 182
>PRK14046 malate--CoA ligase subunit beta; Provisional
Probab=33.77 E-value=3.9e+02 Score=24.70 Aligned_cols=120 Identities=15% Similarity=0.103 Sum_probs=63.2
Q ss_pred CCeEEEcCCCcChhHHHHHHHHhcCCeEEEEeCCCCCCCCCCCCCCceee---ecCCHHHHHHHHHH--hcCeEEE-ecC
Q 028138 40 KLDLVYGGGSVGLMGLVSQAVHDGGRHVLGVIPKTLTPREITGDPVGEVK---TVSDMHQRKAEMAR--QADAFIA-LPG 113 (213)
Q Consensus 40 G~~lv~GGg~~GlM~a~~~ga~~~gG~viGv~P~~~~~~e~~~~~~~~~~---~~~~~~~R~~~l~~--~sDa~Iv-lpG 113 (213)
|-.-+-+.|- |+.-+..+-...+|+. | .|++ ++- ..+.+..=-+++.. ..|++++ ++|
T Consensus 257 G~ig~i~nGa-Gl~m~t~D~i~~~gg~-----p---------aNPl-Dlgg~a~~e~~~~aL~~ll~Dp~VdaVlv~i~g 320 (392)
T PRK14046 257 GDIGCIVNGA-GLAMATMDMIKLAGGE-----P---------ANFL-DVGGGASPERVAKAFRLVLSDRNVKAILVNIFA 320 (392)
T ss_pred CcEEEEeCCc-cHHHHHHHHHHhcCCC-----C---------cCCE-EecCCCCHHHHHHHHHHHHcCCCCCEEEEEcCC
Confidence 3333344553 8888888888888874 2 2222 111 01111111222222 2366554 467
Q ss_pred CCCcHHHHHHHHHHHHhC-CCCCceEEEecCc-cchHHHHHHHHHHHcCCCCccccCcEEEcCCHHHHHHHHHhh
Q 028138 114 GYGTLEELLEVITWAQLG-IHRKPVGLLNVDG-FYNSLLSFVDKAVDEGFISPTARRIIISAPTAKKLVRQLEEY 186 (213)
Q Consensus 114 G~GTL~Ei~~~~~~~~lg-~~~kPiill~~~g-~~~~l~~~l~~~~~~g~i~~~~~~~i~~~~~~ee~~~~l~~~ 186 (213)
|+.-.+++.+.+.-..-. ..+|||++- ..| -.+...+. +.+.|. .++..+|.+|+++...+.
T Consensus 321 gi~~~~~vA~~Ii~a~~~~~~~kPvvv~-l~G~~~e~~~~i---L~~~Gi-------pvf~~~~~~~a~~~~v~~ 384 (392)
T PRK14046 321 GINRCDWVAEGVVQAAREVGIDVPLVVR-LAGTNVEEGRKI---LAESGL-------PIITADTLAEAAEKAVEA 384 (392)
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCcEEEE-cCCCCHHHHHHH---HHHcCC-------CeeecCCHHHHHHHHHHH
Confidence 777668887766532211 256899554 334 22222222 333343 378899999999987754
No 183
>PLN02945 nicotinamide-nucleotide adenylyltransferase/nicotinate-nucleotide adenylyltransferase
Probab=33.57 E-value=1.1e+02 Score=25.98 Aligned_cols=42 Identities=12% Similarity=0.035 Sum_probs=30.2
Q ss_pred ccccCCceEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCeEE
Q 028138 3 DAKSRFKRICVFCGSSSGKKATYQEAAVELGKELVERKLDLV 44 (213)
Q Consensus 3 ~~~~~~~~I~V~ggs~~~~~~~~~~~A~~lG~~lA~~G~~lv 44 (213)
++..+...|+|||||=......+...|+..-+.+...++.+|
T Consensus 16 ~~~~~~~~v~i~GGSFdP~H~gHl~ia~~a~~~l~~d~~~~v 57 (236)
T PLN02945 16 STGPRTRVVLVATGSFNPPTYMHLRMFELARDALMSEGYHVL 57 (236)
T ss_pred CccCCceEEEEEcCCCCCCcHHHHHHHHHHHHHHhhcCcEEE
Confidence 345666789999999877777777777777777765555444
No 184
>PF09587 PGA_cap: Bacterial capsule synthesis protein PGA_cap; InterPro: IPR019079 CapA is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein [].
Probab=33.45 E-value=53 Score=27.92 Aligned_cols=20 Identities=25% Similarity=0.498 Sum_probs=16.5
Q ss_pred HHHHHHHHHCCCeEEEcCCC
Q 028138 30 VELGKELVERKLDLVYGGGS 49 (213)
Q Consensus 30 ~~lG~~lA~~G~~lv~GGg~ 49 (213)
+++++.+.+.|.++|.|+.+
T Consensus 206 ~~~a~~lidaGaDiIiG~Hp 225 (250)
T PF09587_consen 206 RELARALIDAGADIIIGHHP 225 (250)
T ss_pred HHHHHHHHHcCCCEEEeCCC
Confidence 56888888888888888876
No 185
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=33.40 E-value=1.4e+02 Score=24.91 Aligned_cols=67 Identities=18% Similarity=0.264 Sum_probs=37.7
Q ss_pred HHHHhcCeEEEecCCC-CcHHHHHHHHHHHHhCCCCCceEEEecCccchHHHHHHHHHHHcCCCCccccCcEEEcCCHHH
Q 028138 100 EMARQADAFIALPGGY-GTLEELLEVITWAQLGIHRKPVGLLNVDGFYNSLLSFVDKAVDEGFISPTARRIIISAPTAKK 178 (213)
Q Consensus 100 ~l~~~sDa~IvlpGG~-GTL~Ei~~~~~~~~lg~~~kPiill~~~g~~~~l~~~l~~~~~~g~i~~~~~~~i~~~~~~ee 178 (213)
-++..||++|. |... |.-.=+.|++. .++|||.-+..+. . +++++ . ..+.-.+|+++
T Consensus 264 ~~~~~adi~v~-ps~~e~~~~~~~Ea~a------~g~PvI~~~~~~~-~---e~~~~---~--------g~~~~~~~~~~ 321 (365)
T cd03807 264 ALLNALDVFVL-SSLSEGFPNVLLEAMA------CGLPVVATDVGDN-A---ELVGD---T--------GFLVPPGDPEA 321 (365)
T ss_pred HHHHhCCEEEe-CCccccCCcHHHHHHh------cCCCEEEcCCCCh-H---HHhhc---C--------CEEeCCCCHHH
Confidence 45688998775 4322 11112455554 4799998765432 2 22221 1 23444568888
Q ss_pred HHHHHHhhcC
Q 028138 179 LVRQLEEYVP 188 (213)
Q Consensus 179 ~~~~l~~~~~ 188 (213)
+.+.|.+...
T Consensus 322 l~~~i~~l~~ 331 (365)
T cd03807 322 LAEAIEALLA 331 (365)
T ss_pred HHHHHHHHHh
Confidence 8888877543
No 186
>PF13614 AAA_31: AAA domain; PDB: 2VED_B 2PH1_A 3EA0_B 3FKQ_A 3KB1_B 1ION_A 3LA6_H 3BFV_B 3CIO_D.
Probab=33.26 E-value=94 Score=23.65 Aligned_cols=32 Identities=25% Similarity=0.333 Sum_probs=19.9
Q ss_pred ceEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCeE
Q 028138 9 KRICVFCGSSSGKKATYQEAAVELGKELVERKLDL 43 (213)
Q Consensus 9 ~~I~V~ggs~~~~~~~~~~~A~~lG~~lA~~G~~l 43 (213)
+.|+|++. ..+.... ..|..|++.||+.|..+
T Consensus 1 k~i~v~s~-~~g~G~t--~~a~~lA~~la~~~~~V 32 (157)
T PF13614_consen 1 KVIAVWSP-KGGVGKT--TLALNLAAALARKGKKV 32 (157)
T ss_dssp EEEEEEES-STTSSHH--HHHHHHHHHHHHTTT-E
T ss_pred CEEEEECC-CCCCCHH--HHHHHHHHHHHhcCCCe
Confidence 35788843 3333333 35788999999888654
No 187
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=33.09 E-value=1.8e+02 Score=25.61 Aligned_cols=60 Identities=27% Similarity=0.346 Sum_probs=38.1
Q ss_pred CceEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEcCCCcChhHHHHHHHHhcCCeEEEEeCCCC
Q 028138 8 FKRICVFCGSSSGKKATYQEAAVELGKELVERKLDLVYGGGSVGLMGLVSQAVHDGGRHVLGVIPKTL 75 (213)
Q Consensus 8 ~~~I~V~ggs~~~~~~~~~~~A~~lG~~lA~~G~~lv~GGg~~GlM~a~~~ga~~~gG~viGv~P~~~ 75 (213)
.+++-|- |++.+ ..+++++.||++|+.||-=+-..=-++++++--....|..+=++|-.+
T Consensus 6 ~~~~lIT-GASsG-------IG~~~A~~lA~~g~~liLvaR~~~kL~~la~~l~~~~~v~v~vi~~DL 65 (265)
T COG0300 6 GKTALIT-GASSG-------IGAELAKQLARRGYNLILVARREDKLEALAKELEDKTGVEVEVIPADL 65 (265)
T ss_pred CcEEEEE-CCCch-------HHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHHHhhCceEEEEECcC
Confidence 3456666 44444 356778888999999998776644556666655554554455666543
No 188
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=33.06 E-value=1.5e+02 Score=24.43 Aligned_cols=81 Identities=15% Similarity=0.097 Sum_probs=44.5
Q ss_pred HHHHHHCCCeEEEcCCCcChhHHHHHHHHhcCCeEEEEeCCC--C---CCCCCCCCCCce----eeecCCHHHHHHHHHH
Q 028138 33 GKELVERKLDLVYGGGSVGLMGLVSQAVHDGGRHVLGVIPKT--L---TPREITGDPVGE----VKTVSDMHQRKAEMAR 103 (213)
Q Consensus 33 G~~lA~~G~~lv~GGg~~GlM~a~~~ga~~~gG~viGv~P~~--~---~~~e~~~~~~~~----~~~~~~~~~R~~~l~~ 103 (213)
-+.+...+..|-|||| =+|-.-++.++...|.||=+--+. . +..+...+.+.+ -.+.+-|.+|+.+..+
T Consensus 66 ~~l~~~~~~ViaTGGG--~v~~~enr~~l~~~g~vv~L~~~~e~l~~Rl~~~~~RPll~~~~~~~~l~~L~~~R~~~Y~e 143 (172)
T COG0703 66 KELLEEDNAVIATGGG--AVLSEENRNLLKKRGIVVYLDAPFETLYERLQRDRKRPLLQTEDPREELEELLEERQPLYRE 143 (172)
T ss_pred HHHhhcCCeEEECCCc--cccCHHHHHHHHhCCeEEEEeCCHHHHHHHhccccCCCcccCCChHHHHHHHHHHHHHHHHH
Confidence 3344444576677776 488888899999888777652111 0 111111111111 1123445788888777
Q ss_pred hcCeEEEecCCC
Q 028138 104 QADAFIALPGGY 115 (213)
Q Consensus 104 ~sDa~IvlpGG~ 115 (213)
.+|.++-.....
T Consensus 144 ~a~~~~~~~~~~ 155 (172)
T COG0703 144 VADFIIDTDDRS 155 (172)
T ss_pred hCcEEecCCCCc
Confidence 777666555544
No 189
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=32.96 E-value=53 Score=29.57 Aligned_cols=28 Identities=32% Similarity=0.563 Sum_probs=22.4
Q ss_pred CCCeEEEcCCCcChhHHHHHHHHhcCCeE
Q 028138 39 RKLDLVYGGGSVGLMGLVSQAVHDGGRHV 67 (213)
Q Consensus 39 ~G~~lv~GGg~~GlM~a~~~ga~~~gG~v 67 (213)
.+..||||||. |+=++.+....+.|.++
T Consensus 38 g~~vLITGgg~-GlGr~ialefa~rg~~~ 65 (300)
T KOG1201|consen 38 GEIVLITGGGS-GLGRLIALEFAKRGAKL 65 (300)
T ss_pred CCEEEEeCCCc-hHHHHHHHHHHHhCCeE
Confidence 57788899886 98888888888877744
No 190
>KOG4175 consensus Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=32.90 E-value=89 Score=26.93 Aligned_cols=63 Identities=21% Similarity=0.244 Sum_probs=0.0
Q ss_pred cHHHHHHHHHHHHhCCCCCceEEEecCccchHHHHHHHHHHHcCCCCccccCcEEEcCCHHHHHHH
Q 028138 117 TLEELLEVITWAQLGIHRKPVGLLNVDGFYNSLLSFVDKAVDEGFISPTARRIIISAPTAKKLVRQ 182 (213)
Q Consensus 117 TL~Ei~~~~~~~~lg~~~kPiill~~~g~~~~l~~~l~~~~~~g~i~~~~~~~i~~~~~~ee~~~~ 182 (213)
||+.+++.+....-.-...||+|+ |||+|++.+=..-.-+..-.......|...=-|||+...
T Consensus 78 tl~~i~emvk~ar~~gvt~PIiLm---gYYNPIl~yG~e~~iq~ak~aGanGfiivDlPpEEa~~~ 140 (268)
T KOG4175|consen 78 TLNSIIEMVKEARPQGVTCPIILM---GYYNPILRYGVENYIQVAKNAGANGFIIVDLPPEEAETL 140 (268)
T ss_pred cHHHHHHHHHHhcccCcccceeee---ecccHHHhhhHHHHHHHHHhcCCCceEeccCChHHHHHH
No 191
>cd00432 Ribosomal_L18_L5e Ribosomal L18/L5e: L18 (L5e) is a ribosomal protein found in the central protuberance (CP) of the large subunit. L18 binds 5S rRNA and induces a conformational change that stimulates the binding of L5 to 5S rRNA. Association of 5S rRNA with 23S rRNA depends on the binding of L18 and L5 to 5S rRNA. L18/L5e is generally described as L18 in prokaryotes and archaea, and as L5e (or L5) in eukaryotes. In bacteria, the CP proteins L5, L18, and L25 are required for the ribosome to incorporate 5S rRNA into the large subunit, one of the last steps in ribosome assembly. In archaea, both L18 and L5 bind 5S rRNA; in eukaryotes, only the L18 homolog (L5e) binds 5S rRNA but a homolog to L5 is also identified.
Probab=32.68 E-value=94 Score=22.91 Aligned_cols=38 Identities=32% Similarity=0.498 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHC----CCeEE---EcCCC-cChhHHHHHHHHhcC
Q 028138 27 EAAVELGKELVER----KLDLV---YGGGS-VGLMGLVSQAVHDGG 64 (213)
Q Consensus 27 ~~A~~lG~~lA~~----G~~lv---~GGg~-~GlM~a~~~ga~~~g 64 (213)
+.|+.+|+.||++ |+.-+ -|+.. .|-+.|+++++.++|
T Consensus 57 ~aA~~vG~~la~r~~~~gi~~vv~D~~~~~~~grv~a~~~~~r~~G 102 (103)
T cd00432 57 EAAYLVGRLLAKRALEKGIKKVVFDRGGYRYHGRVKALAKGAREGG 102 (103)
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEeCCCcccccHHHHHHHHHHHcC
Confidence 5688888888873 43332 34433 489999999999976
No 192
>COG0163 UbiX 3-polyprenyl-4-hydroxybenzoate decarboxylase [Coenzyme metabolism]
Probab=32.50 E-value=93 Score=26.18 Aligned_cols=80 Identities=16% Similarity=0.187 Sum_probs=52.6
Q ss_pred cCeEEEecCCCCcHHHHHHHHHHHHhC-------CCCCceEEEecCccc--hHHHHHHHHHHHc-CCCCccccCcEEEcC
Q 028138 105 ADAFIALPGGYGTLEELLEVITWAQLG-------IHRKPVGLLNVDGFY--NSLLSFVDKAVDE-GFISPTARRIIISAP 174 (213)
Q Consensus 105 sDa~IvlpGG~GTL~Ei~~~~~~~~lg-------~~~kPiill~~~g~~--~~l~~~l~~~~~~-g~i~~~~~~~i~~~~ 174 (213)
.|+.|+.|=...||..|..=++-.-+. +.++|.||+-.+--+ -++.++++ +.+. +.|-+.....++--.
T Consensus 81 ~~gMiI~PCSmkTla~IA~G~~dnLi~RAAdV~LKErR~LVLv~REtPl~~ihLeNMlk-l~~~GaiI~Pp~PaFY~~P~ 159 (191)
T COG0163 81 TDGMIIAPCSMKTLAAIAHGFADNLITRAADVALKERRPLVLVPRETPLSLIHLENMLK-LAEMGAIIMPPMPAFYHKPQ 159 (191)
T ss_pred cCcEEEEeCcHHHHHHHHhcccccHHHHHHHHHHhhCCceEEEeccCCccHHHHHHHHH-HHHCCCEecCCChhhhcCCC
Confidence 478999999999999987544432221 357888888543222 23444444 3334 445666677778888
Q ss_pred CHHHHHHHHHh
Q 028138 175 TAKKLVRQLEE 185 (213)
Q Consensus 175 ~~ee~~~~l~~ 185 (213)
+.||+++++..
T Consensus 160 sieDlvd~~v~ 170 (191)
T COG0163 160 SIEDLVDFVVG 170 (191)
T ss_pred CHHHHHHHHHH
Confidence 99999998754
No 193
>cd02201 FtsZ_type1 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=32.46 E-value=3.1e+02 Score=24.23 Aligned_cols=73 Identities=18% Similarity=0.388 Sum_probs=39.1
Q ss_pred HHHHHHHCCCeEEE---cCCC-cChhHHHHHHHHhcCCeEEEEeCCCCCCCCCCCCCCceeeecCCHHHHHHHHHHhcCe
Q 028138 32 LGKELVERKLDLVY---GGGS-VGLMGLVSQAVHDGGRHVLGVIPKTLTPREITGDPVGEVKTVSDMHQRKAEMARQADA 107 (213)
Q Consensus 32 lG~~lA~~G~~lv~---GGg~-~GlM~a~~~ga~~~gG~viGv~P~~~~~~e~~~~~~~~~~~~~~~~~R~~~l~~~sDa 107 (213)
+-+.|-.....+|+ |||. .|.--.+++-+.+.|-.+++|.|..+. .|.... ...=....+.|.+.+|.
T Consensus 78 I~~~l~~~d~v~i~aglGGGTGSG~ap~ia~~a~e~g~~~~~vvt~Pf~-~Eg~~~-------~~nA~~~l~~L~~~~d~ 149 (304)
T cd02201 78 IKEALEGADMVFITAGMGGGTGTGAAPVIAKIAKEMGALTVAVVTKPFS-FEGKKR-------MRQAEEGLEELRKHVDT 149 (304)
T ss_pred HHHHHhCCCEEEEeeccCCCcchhHHHHHHHHHHHcCCCEEEEEeCCcc-ccchhH-------HHHHHHHHHHHHHhCCE
Confidence 33444445555555 5554 235555677788888888888654321 111000 00012234445677888
Q ss_pred EEEec
Q 028138 108 FIALP 112 (213)
Q Consensus 108 ~Ivlp 112 (213)
+|+++
T Consensus 150 ~ivid 154 (304)
T cd02201 150 LIVIP 154 (304)
T ss_pred EEEEe
Confidence 88887
No 194
>COG1582 FlgEa Uncharacterized protein, possibly involved in motility [Cell motility and secretion]
Probab=31.98 E-value=40 Score=23.46 Aligned_cols=24 Identities=8% Similarity=0.257 Sum_probs=19.7
Q ss_pred cCcEEEcCCHHHHHHHHHhhcCCC
Q 028138 167 RRIIISAPTAKKLVRQLEEYVPEH 190 (213)
Q Consensus 167 ~~~i~~~~~~ee~~~~l~~~~~~~ 190 (213)
...+.+-+|.||+++.+.+|+...
T Consensus 35 GkkyvVkEsveEVi~kI~~y~rkI 58 (67)
T COG1582 35 GKKYVVKESVEEVINKIIEYRRKI 58 (67)
T ss_pred CcEEEEcccHHHHHHHHHHHHHHh
Confidence 356788999999999999986653
No 195
>TIGR02690 resist_ArsH arsenical resistance protein ArsH. Members of this protein family occur in arsenate resistance operons that include at least two different types of arsenate reductase. ArsH is not required for arsenate resistance in some systems. This family belongs to the larger family of NADPH-dependent FMN reductases (Pfam model pfam03358). The function of ArsH is not known.
Probab=31.80 E-value=1e+02 Score=26.27 Aligned_cols=38 Identities=21% Similarity=0.149 Sum_probs=22.8
Q ss_pred ccCCceEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCeE
Q 028138 5 KSRFKRICVFCGSSSGKKATYQEAAVELGKELVERKLDL 43 (213)
Q Consensus 5 ~~~~~~I~V~ggs~~~~~~~~~~~A~~lG~~lA~~G~~l 43 (213)
+.++++|.+++||....+ .-...|+.+.+.+...|+.+
T Consensus 23 ~~~~~kI~~I~GSlR~~S-~n~~la~~~~~~~~~~g~~v 60 (219)
T TIGR02690 23 KPHIPRILLLYGSLRERS-YSRLLAEEAARLLGCEGRET 60 (219)
T ss_pred CCCCCEEEEEECCCCCcc-hHHHHHHHHHHHHhhcCCEE
Confidence 456678888888876533 33345666666665555554
No 196
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=31.76 E-value=1e+02 Score=28.55 Aligned_cols=73 Identities=15% Similarity=0.111 Sum_probs=41.3
Q ss_pred ChhHHHHHHHHhcCC-eEEEEeCCCCCCCCCCCCCCceeee-------cCCHHHHHHHHHHhcCeEEEecCCCCcHHHHH
Q 028138 51 GLMGLVSQAVHDGGR-HVLGVIPKTLTPREITGDPVGEVKT-------VSDMHQRKAEMARQADAFIALPGGYGTLEELL 122 (213)
Q Consensus 51 GlM~a~~~ga~~~gG-~viGv~P~~~~~~e~~~~~~~~~~~-------~~~~~~R~~~l~~~sDa~IvlpGG~GTL~Ei~ 122 (213)
|--..+.+--.++|- -+.||++......+.....-.+.+. .+...++..-+++.||++|..+-=+|+-.++.
T Consensus 277 ~~~~~~~~~L~~~g~~v~~g~l~~~d~d~~~a~~l~~~~~~~~pf~~i~~~~~~~a~~~~~~~~~vi~~~~~~g~~~~~~ 356 (402)
T PRK09536 277 QPAARAVSRLVAAGASVSVGPVPEGDTAAETAARVGCEAVTVPPFKPIEDSTRAEATDLIIAADAVVAAGVAAAARSGVI 356 (402)
T ss_pred CcHHHHHHHHHHCCCeEEEecCcCcchhHHHHHHcCCCEEeeCCCCCCCHHHHHHHHHHHHhCCEEEECCCccCCCCCch
Confidence 334455555555553 4578877654332222111112222 23336788889999999999776666655554
Q ss_pred H
Q 028138 123 E 123 (213)
Q Consensus 123 ~ 123 (213)
.
T Consensus 357 ~ 357 (402)
T PRK09536 357 G 357 (402)
T ss_pred h
Confidence 3
No 197
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=31.65 E-value=94 Score=27.33 Aligned_cols=35 Identities=14% Similarity=0.070 Sum_probs=25.6
Q ss_pred ceEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEc
Q 028138 9 KRICVFCGSSSGKKATYQEAAVELGKELVERKLDLVYG 46 (213)
Q Consensus 9 ~~I~V~ggs~~~~~~~~~~~A~~lG~~lA~~G~~lv~G 46 (213)
|+|+|+. +.+ ++.-.+.++++.++|.++|+.+..-
T Consensus 1 m~v~iv~--~~~-k~~~~~~~~~I~~~L~~~g~~v~v~ 35 (277)
T PRK03708 1 MRFGIVA--RRD-KEEALKLAYRVYDFLKVSGYEVVVD 35 (277)
T ss_pred CEEEEEe--cCC-CHHHHHHHHHHHHHHHHCCCEEEEe
Confidence 4689983 333 4555577889999999999988763
No 198
>PRK08185 hypothetical protein; Provisional
Probab=31.60 E-value=3.7e+02 Score=23.83 Aligned_cols=103 Identities=14% Similarity=0.041 Sum_probs=55.4
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCeE-----EEcCCCcC-----------hhHHHHHHHHhcCCeEEEEeCCCCCCCC
Q 028138 16 GSSSGKKATYQEAAVELGKELVERKLDL-----VYGGGSVG-----------LMGLVSQAVHDGGRHVLGVIPKTLTPRE 79 (213)
Q Consensus 16 gs~~~~~~~~~~~A~~lG~~lA~~G~~l-----v~GGg~~G-----------lM~a~~~ga~~~gG~viGv~P~~~~~~e 79 (213)
..+.-+.+++.+.++++-+.....|..| ..||...+ =.+.+.+-..+-|-..+.+.-+..
T Consensus 98 D~S~l~~eeNi~~t~~vv~~a~~~gv~vE~ElG~vg~~e~~~~~~~~~~~~t~peea~~f~~~TgvD~LAvaiGt~---- 173 (283)
T PRK08185 98 DGSLLPYEENVALTKEVVELAHKVGVSVEGELGTIGNTGTSIEGGVSEIIYTDPEQAEDFVSRTGVDTLAVAIGTA---- 173 (283)
T ss_pred eCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEEeeccCcccccccccccccCCCHHHHHHHHHhhCCCEEEeccCcc----
Confidence 3333457788889999988887777766 22331111 012222222222444444411110
Q ss_pred CCCCCCceeeecCCH-HHHHHHHHHhcCeEEEecCCCCcHHHHHHHH
Q 028138 80 ITGDPVGEVKTVSDM-HQRKAEMARQADAFIALPGGYGTLEELLEVI 125 (213)
Q Consensus 80 ~~~~~~~~~~~~~~~-~~R~~~l~~~sDa~IvlpGG~GTL~Ei~~~~ 125 (213)
+..|..-- .+.+ .+|.+.+.+..|.-+|+-||+|+-+|-+.-.
T Consensus 174 --HG~y~~~~-kp~L~~e~l~~I~~~~~iPLVlHGgsg~~~e~~~~a 217 (283)
T PRK08185 174 --HGIYPKDK-KPELQMDLLKEINERVDIPLVLHGGSANPDAEIAES 217 (283)
T ss_pred --cCCcCCCC-CCCcCHHHHHHHHHhhCCCEEEECCCCCCHHHHHHH
Confidence 11110000 0111 6677777777799999999999999887544
No 199
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=31.31 E-value=1.2e+02 Score=26.34 Aligned_cols=69 Identities=20% Similarity=0.295 Sum_probs=39.0
Q ss_pred HHHHHhcCeEEEe--cCCCCcHHHHHHHHHHHHhCCCCCceEEEecCccchHHHHHHHHHHHcCCCCccccCcEEEcCCH
Q 028138 99 AEMARQADAFIAL--PGGYGTLEELLEVITWAQLGIHRKPVGLLNVDGFYNSLLSFVDKAVDEGFISPTARRIIISAPTA 176 (213)
Q Consensus 99 ~~l~~~sDa~Ivl--pGG~GTL~Ei~~~~~~~~lg~~~kPiill~~~g~~~~l~~~l~~~~~~g~i~~~~~~~i~~~~~~ 176 (213)
..+...||+++.- ..|.|.- ++|++. .++||+..+..| . .++++ + .....+.-.+|+
T Consensus 297 ~~~~~~adi~l~ps~~e~~~~~--l~Ea~a------~G~Pvi~s~~~~-~---~e~i~----~-----~~~g~~~~~~~~ 355 (398)
T cd03800 297 PALYRAADVFVNPALYEPFGLT--ALEAMA------CGLPVVATAVGG-P---RDIVV----D-----GVTGLLVDPRDP 355 (398)
T ss_pred HHHHHhCCEEEecccccccCcH--HHHHHh------cCCCEEECCCCC-H---HHHcc----C-----CCCeEEeCCCCH
Confidence 3456779998743 2344432 566664 579998876543 2 22211 1 112233334579
Q ss_pred HHHHHHHHhhcC
Q 028138 177 KKLVRQLEEYVP 188 (213)
Q Consensus 177 ee~~~~l~~~~~ 188 (213)
+++.+.|.+...
T Consensus 356 ~~l~~~i~~l~~ 367 (398)
T cd03800 356 EALAAALRRLLT 367 (398)
T ss_pred HHHHHHHHHHHh
Confidence 988888877643
No 200
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=31.29 E-value=52 Score=29.69 Aligned_cols=42 Identities=24% Similarity=0.301 Sum_probs=32.5
Q ss_pred ccchHHHHHHHHHHHcCCCCccccCc---EEEcCCHHHHHHHHHh
Q 028138 144 GFYNSLLSFVDKAVDEGFISPTARRI---IISAPTAKKLVRQLEE 185 (213)
Q Consensus 144 g~~~~l~~~l~~~~~~g~i~~~~~~~---i~~~~~~ee~~~~l~~ 185 (213)
.+|+-+..-+..|+.+|.|+++..+. -.+..+++|+.+.|++
T Consensus 198 ~~~~~l~~~l~dMv~eGlI~~ek~dsfniP~Y~ps~eEv~~~I~~ 242 (334)
T PF03492_consen 198 MLWDLLADALRDMVAEGLISEEKVDSFNIPIYFPSPEEVRAIIEE 242 (334)
T ss_dssp CHHHHHHHHHHHHHHTTSS-HCCCCTG--SBB---HHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHcCCcCHHHhhceeCCccCCCHHHHHHHHhc
Confidence 47888888889999999999998864 4678999999998877
No 201
>COG3199 Predicted inorganic polyphosphate/ATP-NAD kinase [General function prediction only]
Probab=31.18 E-value=4.3e+02 Score=24.42 Aligned_cols=79 Identities=18% Similarity=0.221 Sum_probs=47.1
Q ss_pred CeEEEcCCCcChhHHHHHHHHhcCCeEEEEeCCCCCCCCCCCCCCceeeecCCHHHHHHHHHHhcCeEEEecCCCCcHHH
Q 028138 41 LDLVYGGGSVGLMGLVSQAVHDGGRHVLGVIPKTLTPREITGDPVGEVKTVSDMHQRKAEMARQADAFIALPGGYGTLEE 120 (213)
Q Consensus 41 ~~lv~GGg~~GlM~a~~~ga~~~gG~viGv~P~~~~~~e~~~~~~~~~~~~~~~~~R~~~l~~~sDa~IvlpGG~GTL~E 120 (213)
...++. + |.|+.....+....-+++++-|... .+... ++.. =-+.|.++.=.+|++-||=||.--
T Consensus 51 ~~flt~--p-~~mG~~~~~~~~~~~~v~~~~~~~~------~tTa~-----DT~~-~~r~~~~~gVdlIvfaGGDGTarD 115 (355)
T COG3199 51 VEFLTP--P-GPMGESLAEASGFKYRVIRFQESTP------RTTAE-----DTIN-AVRRMVERGVDLIVFAGGDGTARD 115 (355)
T ss_pred eEEEeC--C-cccchhHHHhhcCcceEEeecccCC------CccHH-----HHHH-HHHHHHhcCceEEEEeCCCccHHH
Confidence 555664 4 7787776666665666777533211 01010 1111 123366766778899999999999
Q ss_pred HHHHHHHHHhCCCCCceEEE
Q 028138 121 LLEVITWAQLGIHRKPVGLL 140 (213)
Q Consensus 121 i~~~~~~~~lg~~~kPiill 140 (213)
+.++.. ...||+-+
T Consensus 116 Va~av~------~~vPvLGi 129 (355)
T COG3199 116 VAEAVG------ADVPVLGI 129 (355)
T ss_pred HHhhcc------CCCceEee
Confidence 988762 34676655
No 202
>PRK13937 phosphoheptose isomerase; Provisional
Probab=31.14 E-value=1.4e+02 Score=24.36 Aligned_cols=31 Identities=19% Similarity=0.160 Sum_probs=25.7
Q ss_pred CHHHHHHHHHHHHHHHHCCCeEEEcCCCcCh
Q 028138 22 KATYQEAAVELGKELVERKLDLVYGGGSVGL 52 (213)
Q Consensus 22 ~~~~~~~A~~lG~~lA~~G~~lv~GGg~~Gl 52 (213)
.+...+.|.++.+.|.+.+...++|.|..+.
T Consensus 21 ~~~l~~aa~~i~~~l~~a~rI~i~G~G~S~~ 51 (188)
T PRK13937 21 LEAIAKVAEALIEALANGGKILLCGNGGSAA 51 (188)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEeCcHhHH
Confidence 4677888999999999999999999886443
No 203
>PRK13059 putative lipid kinase; Reviewed
Probab=31.11 E-value=99 Score=27.02 Aligned_cols=38 Identities=18% Similarity=0.389 Sum_probs=25.9
Q ss_pred HHHHCCC-eEEEcCCCcChhHHHHHHHHhcC-CeEEEEeCC
Q 028138 35 ELVERKL-DLVYGGGSVGLMGLVSQAVHDGG-RHVLGVIPK 73 (213)
Q Consensus 35 ~lA~~G~-~lv~GGg~~GlM~a~~~ga~~~g-G~viGv~P~ 73 (213)
..++.++ .||..||. |.-..++.|..+.+ ...+||+|.
T Consensus 51 ~~~~~~~d~vi~~GGD-GTv~evv~gl~~~~~~~~lgviP~ 90 (295)
T PRK13059 51 KDIDESYKYILIAGGD-GTVDNVVNAMKKLNIDLPIGILPV 90 (295)
T ss_pred HHhhcCCCEEEEECCc-cHHHHHHHHHHhcCCCCcEEEECC
Confidence 3344554 34455665 98888888888764 456999994
No 204
>PF14947 HTH_45: Winged helix-turn-helix; PDB: 1XSX_B 1R7J_A.
Probab=31.04 E-value=60 Score=22.65 Aligned_cols=41 Identities=20% Similarity=0.363 Sum_probs=32.6
Q ss_pred cchHHHHHHHHHHHcCCCCccccCcEEEcCCHHHHHHHHHhh
Q 028138 145 FYNSLLSFVDKAVDEGFISPTARRIIISAPTAKKLVRQLEEY 186 (213)
Q Consensus 145 ~~~~l~~~l~~~~~~g~i~~~~~~~i~~~~~~ee~~~~l~~~ 186 (213)
=|+.+..+++.+.+.|++. .....+.+++.-.++++.+.++
T Consensus 32 ~~~~~~~yL~~L~~~gLI~-~~~~~Y~lTekG~~~l~~l~~~ 72 (77)
T PF14947_consen 32 NYSTLKKYLKELEEKGLIK-KKDGKYRLTEKGKEFLEELEEL 72 (77)
T ss_dssp -HHHHHHHHHHHHHTTSEE-EETTEEEE-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCcCee-CCCCEEEECccHHHHHHHHHHH
Confidence 4667788899999999994 4667888999999999988775
No 205
>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=30.74 E-value=2.1e+02 Score=25.36 Aligned_cols=31 Identities=19% Similarity=0.366 Sum_probs=19.4
Q ss_pred CCCeEEEcCCCcChhHHHHHHHHhcCCeEEEEe
Q 028138 39 RKLDLVYGGGSVGLMGLVSQAVHDGGRHVLGVI 71 (213)
Q Consensus 39 ~G~~lv~GGg~~GlM~a~~~ga~~~gG~viGv~ 71 (213)
..+.++.|| . |.|=-+++-+...+-.++||-
T Consensus 65 ~Dlvi~iGG-D-GT~L~aa~~~~~~~~PilGIN 95 (287)
T PRK14077 65 SDFLISLGG-D-GTLISLCRKAAEYDKFVLGIH 95 (287)
T ss_pred CCEEEEECC-C-HHHHHHHHHhcCCCCcEEEEe
Confidence 456666664 5 876555555555667788873
No 206
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=30.62 E-value=48 Score=31.07 Aligned_cols=27 Identities=44% Similarity=0.781 Sum_probs=18.9
Q ss_pred eEEEcCCCcChhHHHHHHHHhcCCeEEEE
Q 028138 42 DLVYGGGSVGLMGLVSQAVHDGGRHVLGV 70 (213)
Q Consensus 42 ~lv~GGg~~GlM~a~~~ga~~~gG~viGv 70 (213)
.+|-|||+.|+|-|+.-+ ++|.+|+=+
T Consensus 6 viIIGgGpAGlMaA~~aa--~~G~~V~li 32 (408)
T COG2081 6 VIIIGGGPAGLMAAISAA--KAGRRVLLI 32 (408)
T ss_pred EEEECCCHHHHHHHHHHh--hcCCEEEEE
Confidence 457799999999877654 356665544
No 207
>KOG4321 consensus Predicted phosphate acyltransferases [Lipid transport and metabolism]
Probab=30.51 E-value=57 Score=27.31 Aligned_cols=30 Identities=30% Similarity=0.430 Sum_probs=26.3
Q ss_pred HHHHHHHHHhcCeEEEecCCCCcHHHHHHH
Q 028138 95 HQRKAEMARQADAFIALPGGYGTLEELLEV 124 (213)
Q Consensus 95 ~~R~~~l~~~sDa~IvlpGG~GTL~Ei~~~ 124 (213)
..|.+++....|-|++---|+||.+|.|.+
T Consensus 68 lqrerliytigdrflfklpgwgtiseafhv 97 (279)
T KOG4321|consen 68 LQRERLIYTIGDRFLFKLPGWGTISEAFHV 97 (279)
T ss_pred HhhhhheEeecceeEEeCCCccchhhhhcc
Confidence 688888889999999888889999999864
No 208
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=30.46 E-value=1.9e+02 Score=24.63 Aligned_cols=72 Identities=13% Similarity=0.045 Sum_probs=40.8
Q ss_pred HHHHHHhcCeEEEecCCCCcHHHHHHHHHHHHhCCCCCceEEEecCccchHHHHHHHHHHHcCCCCccccCcEEEcCCHH
Q 028138 98 KAEMARQADAFIALPGGYGTLEELLEVITWAQLGIHRKPVGLLNVDGFYNSLLSFVDKAVDEGFISPTARRIIISAPTAK 177 (213)
Q Consensus 98 ~~~l~~~sDa~IvlpGG~GTL~Ei~~~~~~~~lg~~~kPiill~~~g~~~~l~~~l~~~~~~g~i~~~~~~~i~~~~~~e 177 (213)
...+...||++|.-.---|.-.=++|++. .++|||.-+..|. . +.+.+ ....+...++++
T Consensus 260 ~~~~~~~adi~v~ps~~E~~~~~~lEAma------~G~PvI~s~~~~~-~---~~i~~----------~~~~~~~~~~~~ 319 (358)
T cd03812 260 VPELLQAMDVFLFPSLYEGLPLVLIEAQA------SGLPCILSDTITK-E---VDLTD----------LVKFLSLDESPE 319 (358)
T ss_pred HHHHHHhcCEEEecccccCCCHHHHHHHH------hCCCEEEEcCCch-h---hhhcc----------CccEEeCCCCHH
Confidence 33467889988753321122223566665 5799998876543 1 11111 112334456679
Q ss_pred HHHHHHHhhcCC
Q 028138 178 KLVRQLEEYVPE 189 (213)
Q Consensus 178 e~~~~l~~~~~~ 189 (213)
++.+.|.+....
T Consensus 320 ~~a~~i~~l~~~ 331 (358)
T cd03812 320 IWAEEILKLKSE 331 (358)
T ss_pred HHHHHHHHHHhC
Confidence 999988886443
No 209
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=30.30 E-value=2.7e+02 Score=21.76 Aligned_cols=40 Identities=15% Similarity=0.047 Sum_probs=33.4
Q ss_pred HHHHHHHHHCCCeEEEcCCCcChhHHHHHHHHhcCCeEEEE
Q 028138 30 VELGKELVERKLDLVYGGGSVGLMGLVSQAVHDGGRHVLGV 70 (213)
Q Consensus 30 ~~lG~~lA~~G~~lv~GGg~~GlM~a~~~ga~~~gG~viGv 70 (213)
.-++..|-.+||.+++-|-. =-.+...+.|.+.+-.+||+
T Consensus 17 niv~~~L~~~GfeVidLG~~-v~~e~~v~aa~~~~adiVgl 56 (128)
T cd02072 17 KILDHAFTEAGFNVVNLGVL-SPQEEFIDAAIETDADAILV 56 (128)
T ss_pred HHHHHHHHHCCCEEEECCCC-CCHHHHHHHHHHcCCCEEEE
Confidence 44566777799999998764 66799999999999999999
No 210
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=30.16 E-value=2.6e+02 Score=24.39 Aligned_cols=40 Identities=25% Similarity=0.637 Sum_probs=25.2
Q ss_pred cHHHHHHHHHHHHhCCCCCceEEEecCccchHHHH-----HHHHHHHcC
Q 028138 117 TLEELLEVITWAQLGIHRKPVGLLNVDGFYNSLLS-----FVDKAVDEG 160 (213)
Q Consensus 117 TL~Ei~~~~~~~~lg~~~kPiill~~~g~~~~l~~-----~l~~~~~~g 160 (213)
|++.+++.+.-.+ ..++.|++++. ||+++.. |++.+.+.|
T Consensus 75 ~~~~~~~~~~~~r-~~~~~p~vlm~---Y~N~i~~~G~e~F~~~~~~aG 119 (263)
T CHL00200 75 NLNKILSILSEVN-GEIKAPIVIFT---YYNPVLHYGINKFIKKISQAG 119 (263)
T ss_pred CHHHHHHHHHHHh-cCCCCCEEEEe---cccHHHHhCHHHHHHHHHHcC
Confidence 5677776664322 23568988774 7776544 677776665
No 211
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=30.12 E-value=2.7e+02 Score=24.31 Aligned_cols=30 Identities=27% Similarity=0.361 Sum_probs=18.6
Q ss_pred CCeEEEcCCCcChhHHHHHHHHhcCC-eEEEEe
Q 028138 40 KLDLVYGGGSVGLMGLVSQAVHDGGR-HVLGVI 71 (213)
Q Consensus 40 G~~lv~GGg~~GlM~a~~~ga~~~gG-~viGv~ 71 (213)
...+|+|+|..|+| +..-|+..|. +++.+.
T Consensus 171 ~~VlV~G~G~vG~~--aiqlak~~G~~~Vi~~~ 201 (343)
T PRK09880 171 KRVFVSGVGPIGCL--IVAAVKTLGAAEIVCAD 201 (343)
T ss_pred CEEEEECCCHHHHH--HHHHHHHcCCcEEEEEe
Confidence 45678887665554 3455666776 566663
No 212
>PRK09271 flavodoxin; Provisional
Probab=30.06 E-value=96 Score=24.50 Aligned_cols=32 Identities=28% Similarity=0.282 Sum_probs=20.3
Q ss_pred ceEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCeE
Q 028138 9 KRICVFCGSSSGKKATYQEAAVELGKELVERKLDL 43 (213)
Q Consensus 9 ~~I~V~ggs~~~~~~~~~~~A~~lG~~lA~~G~~l 43 (213)
|+|.|+.+|..++.. +.|+.+...|.+.|+.+
T Consensus 1 mkv~IvY~S~tGnTe---~~A~~ia~~l~~~g~~v 32 (160)
T PRK09271 1 MRILLAYASLSGNTR---EVAREIEERCEEAGHEV 32 (160)
T ss_pred CeEEEEEEcCCchHH---HHHHHHHHHHHhCCCee
Confidence 356677677766332 35677777777777654
No 213
>PRK14076 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=29.98 E-value=2.6e+02 Score=27.14 Aligned_cols=34 Identities=9% Similarity=0.096 Sum_probs=24.0
Q ss_pred ccCCceEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCC
Q 028138 5 KSRFKRICVFCGSSSGKKATYQEAAVELGKELVERKL 41 (213)
Q Consensus 5 ~~~~~~I~V~ggs~~~~~~~~~~~A~~lG~~lA~~G~ 41 (213)
+.++++|+|+. +. .++...+.++++.++|.++|+
T Consensus 287 ~~~~~~i~iv~--~~-~~~~~~~~~~~i~~~l~~~~~ 320 (569)
T PRK14076 287 RIKPTKFGIVS--RI-DNEEAINLALKIIKYLDSKGI 320 (569)
T ss_pred ccCCcEEEEEc--CC-CCHHHHHHHHHHHHHHHHCCC
Confidence 56778899993 22 256666788888888866664
No 214
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=29.86 E-value=2.5e+02 Score=25.43 Aligned_cols=63 Identities=19% Similarity=0.273 Sum_probs=37.1
Q ss_pred HHHhcCeEEEecCCCCcHHHHHHHHHHHHhCCCCCceEEEecCccchHHHHHHHHHHHcCCCCccccCcEEEcCCHHHHH
Q 028138 101 MARQADAFIALPGGYGTLEELLEVITWAQLGIHRKPVGLLNVDGFYNSLLSFVDKAVDEGFISPTARRIIISAPTAKKLV 180 (213)
Q Consensus 101 l~~~sDa~IvlpGG~GTL~Ei~~~~~~~~lg~~~kPiill~~~g~~~~l~~~l~~~~~~g~i~~~~~~~i~~~~~~ee~~ 180 (213)
++-.||.+| ||.||+. .|+.. .+.|.|-+.. |.+-..-++ +.+.|. ++.+.|++|++
T Consensus 245 Ll~~a~l~I---g~ggTMa--~EAA~------LGtPaIs~~~-g~~~~vd~~---L~~~Gl--------l~~~~~~~ei~ 301 (335)
T PF04007_consen 245 LLYYADLVI---GGGGTMA--REAAL------LGTPAISCFP-GKLLAVDKY---LIEKGL--------LYHSTDPDEIV 301 (335)
T ss_pred HHHhcCEEE---eCCcHHH--HHHHH------hCCCEEEecC-CcchhHHHH---HHHCCC--------eEecCCHHHHH
Confidence 445566554 5556765 33332 2688886533 233333333 444554 68999999999
Q ss_pred HHHHhh
Q 028138 181 RQLEEY 186 (213)
Q Consensus 181 ~~l~~~ 186 (213)
+.+.+.
T Consensus 302 ~~v~~~ 307 (335)
T PF04007_consen 302 EYVRKN 307 (335)
T ss_pred HHHHHh
Confidence 988764
No 215
>PRK10494 hypothetical protein; Provisional
Probab=29.85 E-value=1.9e+02 Score=25.04 Aligned_cols=12 Identities=25% Similarity=0.373 Sum_probs=6.3
Q ss_pred EEEcCCHHHHHH
Q 028138 170 IISAPTAKKLVR 181 (213)
Q Consensus 170 i~~~~~~ee~~~ 181 (213)
+.++.|+--+-.
T Consensus 181 iiLVTsa~Hm~R 192 (259)
T PRK10494 181 FLLVTSASHLPR 192 (259)
T ss_pred EEEECCHHHHHH
Confidence 555666554443
No 216
>PRK08227 autoinducer 2 aldolase; Validated
Probab=29.84 E-value=1.5e+02 Score=25.99 Aligned_cols=55 Identities=16% Similarity=0.224 Sum_probs=36.4
Q ss_pred CCCceEEEecCcc-chHHHHHHHHHHHcCCCCccccCcEEEcCCHHHHHHHHHhhc
Q 028138 133 HRKPVGLLNVDGF-YNSLLSFVDKAVDEGFISPTARRIIISAPTAKKLVRQLEEYV 187 (213)
Q Consensus 133 ~~kPiill~~~g~-~~~l~~~l~~~~~~g~i~~~~~~~i~~~~~~ee~~~~l~~~~ 187 (213)
.+.||++.++..- .+.++++++..++.|...-...+.|+-.+||..+++.|....
T Consensus 191 ~~vPVviaGG~k~~~~~~L~~v~~ai~aGa~Gv~~GRNIfQ~~~p~~~~~al~~IV 246 (264)
T PRK08227 191 CPVPIVIAGGKKLPERDALEMCYQAIDEGASGVDMGRNIFQSEHPVAMIKAVHAVV 246 (264)
T ss_pred CCCcEEEeCCCCCCHHHHHHHHHHHHHcCCceeeechhhhccCCHHHHHHHHHHHH
Confidence 4678877765432 234566666666677666566677777788888888887753
No 217
>PLN02565 cysteine synthase
Probab=29.82 E-value=4e+02 Score=23.70 Aligned_cols=48 Identities=19% Similarity=0.213 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHH-HCCCeEEEcCCCcChhHHHHHHHHhcC--CeEEEEeCC
Q 028138 25 YQEAAVELGKELV-ERKLDLVYGGGSVGLMGLVSQAVHDGG--RHVLGVIPK 73 (213)
Q Consensus 25 ~~~~A~~lG~~lA-~~G~~lv~GGg~~GlM~a~~~ga~~~g--G~viGv~P~ 73 (213)
|...|.++-+.+. +-.+.++ +.|.+|++..++++.++.+ -+++||-|.
T Consensus 158 ~~t~a~Ei~~q~~~~~d~vv~-~vG~GG~l~Gi~~~lk~~~p~~kvi~Vep~ 208 (322)
T PLN02565 158 YETTGPEIWKGTGGKVDAFVS-GIGTGGTITGAGKYLKEQNPDIKLYGVEPV 208 (322)
T ss_pred HHHHHHHHHHhcCCCCCEEEE-cCCchHHHHHHHHHHHHhCCCCEEEEEecC
Confidence 3344445444442 2344444 4444589999999988764 488999774
No 218
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=29.76 E-value=4e+02 Score=23.65 Aligned_cols=31 Identities=19% Similarity=0.257 Sum_probs=25.9
Q ss_pred HHHHHHHHHhcCeEEEecCCCCcHHHHHHHH
Q 028138 95 HQRKAEMARQADAFIALPGGYGTLEELLEVI 125 (213)
Q Consensus 95 ~~R~~~l~~~sDa~IvlpGG~GTL~Ei~~~~ 125 (213)
++|.+-+.+..|.-+||.||.|+-+|-+...
T Consensus 188 ~~~l~~I~~~~~vPLVlHGgSG~~~e~~~~a 218 (283)
T PRK07998 188 IPLLKRIAEVSPVPLVIHGGSGIPPEILRSF 218 (283)
T ss_pred HHHHHHHHhhCCCCEEEeCCCCCCHHHHHHH
Confidence 4688888888899999999999998877543
No 219
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=29.71 E-value=1.8e+02 Score=23.80 Aligned_cols=35 Identities=23% Similarity=0.621 Sum_probs=24.4
Q ss_pred CCeEEEcCCCcC---hhHHHHHHHHhcCCeEEEEeCCC
Q 028138 40 KLDLVYGGGSVG---LMGLVSQAVHDGGRHVLGVIPKT 74 (213)
Q Consensus 40 G~~lv~GGg~~G---lM~a~~~ga~~~gG~viGv~P~~ 74 (213)
.+.+|+|....| ++.++.+...+.|.+|+++.|..
T Consensus 19 ~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~apT~ 56 (196)
T PF13604_consen 19 RVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAPTN 56 (196)
T ss_dssp SEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEESSH
T ss_pred eEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECCcH
Confidence 477787776556 77777777777778888887764
No 220
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=29.61 E-value=77 Score=24.62 Aligned_cols=31 Identities=16% Similarity=0.279 Sum_probs=20.5
Q ss_pred ccCCceEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCeEE
Q 028138 5 KSRFKRICVFCGSSSGKKATYQEAAVELGKELVERKLDLV 44 (213)
Q Consensus 5 ~~~~~~I~V~ggs~~~~~~~~~~~A~~lG~~lA~~G~~lv 44 (213)
+...++|+|+|..+.+ ..||+.|.++||.|+
T Consensus 7 ~~~~l~I~iIGaGrVG---------~~La~aL~~ag~~v~ 37 (127)
T PF10727_consen 7 QAARLKIGIIGAGRVG---------TALARALARAGHEVV 37 (127)
T ss_dssp -----EEEEECTSCCC---------CHHHHHHHHTTSEEE
T ss_pred CCCccEEEEECCCHHH---------HHHHHHHHHCCCeEE
Confidence 3445689999765544 578899999999864
No 221
>PF00710 Asparaginase: Asparaginase; InterPro: IPR006034 Asparaginase, which is found in various plant, animal and bacterial cells, catalyses the deamination of asparagine to yield aspartic acid and an ammonium ion, resulting in a depletion of free circulatory asparagine in plasma []. The enzyme is effective in the treatment of human malignant lymphomas, which have a diminished capacity to produce asparagine synthetase: in order to survive, such cells absorb asparagine from blood plasma [, ] - if Asn levels have been depleted by injection of asparaginase, the lymphoma cells die. Glutaminase, a similar enzyme, catalyses the deaminination of glutamine to glutamic acid and an ammonium ion []. Both enzymes are homotetramers []: two threonine residues in the N-terminal half of the proteins are involved in the catalytic activity.; GO: 0006520 cellular amino acid metabolic process; PDB: 1HFW_C 1HG1_B 1JSL_C 1HFK_A 1JSR_C 1HFJ_C 1HG0_D 1O7J_A 1ZQ1_A 1JJA_D ....
Probab=29.33 E-value=1.4e+02 Score=26.54 Aligned_cols=37 Identities=27% Similarity=0.281 Sum_probs=25.5
Q ss_pred HhcCeEEEecCCCCcHHHHHHHHHHHHhCCCCCceEEEe
Q 028138 103 RQADAFIALPGGYGTLEELLEVITWAQLGIHRKPVGLLN 141 (213)
Q Consensus 103 ~~sDa~IvlpGG~GTL~Ei~~~~~~~~lg~~~kPiill~ 141 (213)
+..|+|||+.| .-||+|....+.+. +...+||||+-+
T Consensus 71 ~~~~GvVVtHG-TDTme~tA~~Ls~~-l~~l~kPVVlTG 107 (313)
T PF00710_consen 71 DDYDGVVVTHG-TDTMEETAFFLSLL-LDNLDKPVVLTG 107 (313)
T ss_dssp TTCSEEEEE---STTHHHHHHHHHHH-EES-SSEEEEE-
T ss_pred HhcCeEEEecC-chHHHHHHHHHHHH-hcCCCCCEEEeC
Confidence 44789888874 78999999888753 222379999875
No 222
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=29.28 E-value=2e+02 Score=24.13 Aligned_cols=123 Identities=21% Similarity=0.235 Sum_probs=54.9
Q ss_pred HHHHHHHHHHCCCeEE-EcCCCcChhHHHHHHHHhcCCeEEEEeCCCC----CCCCCCCCCCceeeecCCHHHHHHHHHH
Q 028138 29 AVELGKELVERKLDLV-YGGGSVGLMGLVSQAVHDGGRHVLGVIPKTL----TPREITGDPVGEVKTVSDMHQRKAEMAR 103 (213)
Q Consensus 29 A~~lG~~lA~~G~~lv-~GGg~~GlM~a~~~ga~~~gG~viGv~P~~~----~~~e~~~~~~~~~~~~~~~~~R~~~l~~ 103 (213)
|-.|.++==+.|=.++ -|+|. |-+..-.- ..--.+++++|=-+.. ..+......+..+.+..+-. .+.|-.
T Consensus 24 al~ls~L~~~~g~~l~DIGaGt-Gsi~iE~a-~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~A--p~~L~~ 99 (187)
T COG2242 24 ALTLSKLRPRPGDRLWDIGAGT-GSITIEWA-LAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDA--PEALPD 99 (187)
T ss_pred HHHHHhhCCCCCCEEEEeCCCc-cHHHHHHH-HhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccc--hHhhcC
Confidence 4445544444555554 57775 76643322 3334689999821100 00000011122222211110 122223
Q ss_pred h--cCeEEEecCCCCcHHHHHHHHHHHHhCCCCCceEEEecCccchHHHHHHHHHHHcCC
Q 028138 104 Q--ADAFIALPGGYGTLEELLEVITWAQLGIHRKPVGLLNVDGFYNSLLSFVDKAVDEGF 161 (213)
Q Consensus 104 ~--sDa~IvlpGG~GTL~Ei~~~~~~~~lg~~~kPiill~~~g~~~~l~~~l~~~~~~g~ 161 (213)
. .|+ |+++|| |+++++++++ |..+...+ -++.|.- --+.+...++.+.+.|+
T Consensus 100 ~~~~da-iFIGGg-~~i~~ile~~-~~~l~~gg--rlV~nai-tlE~~~~a~~~~~~~g~ 153 (187)
T COG2242 100 LPSPDA-IFIGGG-GNIEEILEAA-WERLKPGG--RLVANAI-TLETLAKALEALEQLGG 153 (187)
T ss_pred CCCCCE-EEECCC-CCHHHHHHHH-HHHcCcCC--eEEEEee-cHHHHHHHHHHHHHcCC
Confidence 3 343 556666 9999999876 43332211 3455532 22333344454555565
No 223
>PRK07454 short chain dehydrogenase; Provisional
Probab=29.07 E-value=1.2e+02 Score=24.84 Aligned_cols=34 Identities=15% Similarity=0.092 Sum_probs=23.5
Q ss_pred cCCceEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEcC
Q 028138 6 SRFKRICVFCGSSSGKKATYQEAAVELGKELVERKLDLVYGG 47 (213)
Q Consensus 6 ~~~~~I~V~ggs~~~~~~~~~~~A~~lG~~lA~~G~~lv~GG 47 (213)
..++++.|.|+++ ...+.+.+.|+++|+.|+.-.
T Consensus 4 ~~~k~vlItG~sg--------~iG~~la~~l~~~G~~V~~~~ 37 (241)
T PRK07454 4 NSMPRALITGASS--------GIGKATALAFAKAGWDLALVA 37 (241)
T ss_pred CCCCEEEEeCCCc--------hHHHHHHHHHHHCCCEEEEEe
Confidence 4567888987764 245677777788888766433
No 224
>PRK14138 NAD-dependent deacetylase; Provisional
Probab=28.98 E-value=1.7e+02 Score=25.17 Aligned_cols=70 Identities=4% Similarity=0.016 Sum_probs=42.8
Q ss_pred HHHHHHHHHhcCeEEEecCCCCcHHHHHHHHHHHHhC-CCCCceEEEecCc-cchHHHHHHHHHHHcCCCCccccCcEEE
Q 028138 95 HQRKAEMARQADAFIALPGGYGTLEELLEVITWAQLG-IHRKPVGLLNVDG-FYNSLLSFVDKAVDEGFISPTARRIIIS 172 (213)
Q Consensus 95 ~~R~~~l~~~sDa~IvlpGG~GTL~Ei~~~~~~~~lg-~~~kPiill~~~g-~~~~l~~~l~~~~~~g~i~~~~~~~i~~ 172 (213)
.+|....++.||.+|+++ |=-.+.-+..+...- .++.|++++|.+. .++. ..-+.+
T Consensus 169 ~~~~~~~~~~aDl~lviG----TSl~V~pa~~l~~~~~~~g~~~i~iN~~~t~~d~------------------~~~~~i 226 (244)
T PRK14138 169 LREAIRLSSKASLMIVMG----SSLVVYPAAELPLITVRSGGKLVIVNLGETPLDD------------------IATLKY 226 (244)
T ss_pred HHHHHHHHhcCCEEEEeC----cCCeeecHhHHHHHHHHcCCeEEEEcCCCCCCCc------------------ceeEEE
Confidence 455556678899999954 433333333332221 3578999998741 1111 123678
Q ss_pred cCCHHHHHHHHHhh
Q 028138 173 APTAKKLVRQLEEY 186 (213)
Q Consensus 173 ~~~~ee~~~~l~~~ 186 (213)
..+..|+++.|.++
T Consensus 227 ~~~~~~~l~~l~~~ 240 (244)
T PRK14138 227 NMDVVEFANRVMSE 240 (244)
T ss_pred eCCHHHHHHHHHHH
Confidence 89999999998774
No 225
>cd01408 SIRT1 SIRT1: Eukaryotic group (class1) which includes human sirtuins SIRT1-3 and yeast Hst1-4; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, and life span. The most-studied function, gene silencing, involves the inactivation of chromosome domains containing key regulatory genes by packaging them into a specialized chromatin structure that is inaccessible to DNA-binding proteins. The nuclear SIRT1 has been shown to target the p53 tumor suppressor protein for deacetylation to suppress DNA damage, and the cytoplasmic SIRT2 homolog has been shown to target alpha-tubulin for deacetylation for the maintenance of cell integrity.
Probab=28.94 E-value=1.6e+02 Score=25.00 Aligned_cols=70 Identities=14% Similarity=0.060 Sum_probs=37.4
Q ss_pred HHHHHHHHHhcCeEEEecCCCCcHHHHHHHHHHHHhCCCCCceEEEecCccchHHHHHHHHHHHcCCCCccccCcEEEcC
Q 028138 95 HQRKAEMARQADAFIALPGGYGTLEELLEVITWAQLGIHRKPVGLLNVDGFYNSLLSFVDKAVDEGFISPTARRIIISAP 174 (213)
Q Consensus 95 ~~R~~~l~~~sDa~IvlpGG~GTL~Ei~~~~~~~~lg~~~kPiill~~~g~~~~l~~~l~~~~~~g~i~~~~~~~i~~~~ 174 (213)
..+....++.||.+|+++=. -++.-+..+.+.-..+.|++++|.+.- + + +.....-+.+..
T Consensus 166 ~~~~~~~~~~aDlllvvGTS----l~V~pa~~l~~~~~~~~~~v~iN~~~~--~------------~-~~~~~~d~~~~~ 226 (235)
T cd01408 166 FSHMEEDKEEADLLIVIGTS----LKVAPFASLPSRVPSEVPRVLINREPV--G------------H-LGKRPFDVALLG 226 (235)
T ss_pred HHHHHHHHhcCCEEEEECCC----CeeccHHHHHHHHhCCCcEEEEeCCCC--C------------C-CCCCCcCEEEeC
Confidence 34555567789999996433 222222222221124689999986411 0 0 000112367788
Q ss_pred CHHHHHHHH
Q 028138 175 TAKKLVRQL 183 (213)
Q Consensus 175 ~~ee~~~~l 183 (213)
+.+|++..|
T Consensus 227 ~~~~~l~~~ 235 (235)
T cd01408 227 DCDDGVREL 235 (235)
T ss_pred CHHHHHHhC
Confidence 888887653
No 226
>TIGR01205 D_ala_D_alaTIGR D-alanine--D-alanine ligase. but a number of antibiotic resistance proteins score above the trusted cutoff of this model.
Probab=28.91 E-value=74 Score=27.59 Aligned_cols=38 Identities=21% Similarity=0.205 Sum_probs=25.5
Q ss_pred eEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEcC
Q 028138 10 RICVFCGSSSGKKATYQEAAVELGKELVERKLDLVYGG 47 (213)
Q Consensus 10 ~I~V~ggs~~~~~~~~~~~A~~lG~~lA~~G~~lv~GG 47 (213)
+|+|+||......+.=...++.+-+.|.+.||.++.-.
T Consensus 1 ~~~~~~gg~s~e~~~s~~s~~~i~~al~~~g~~v~~i~ 38 (315)
T TIGR01205 1 RVAVLFGGKSAEHEISLVSAAAVLKALRDLGYDVYPVD 38 (315)
T ss_pred CEEEEeCCCCCCeeeeHHHHHHHHHHHhhcCCEEEEEe
Confidence 36676666544333213578899999999999985443
No 227
>PF04016 DUF364: Domain of unknown function (DUF364); InterPro: IPR007161 This is a entry represents of bacterial and archaeal proteins of unknown function.; PDB: 3L5O_B 3NPG_A.
Probab=28.78 E-value=79 Score=25.01 Aligned_cols=74 Identities=20% Similarity=0.214 Sum_probs=45.2
Q ss_pred HHHHHHHHhcCeEEEecCC--CCcHHHHHHHHHHHHhCCCCCceEEEecCccchH-HHHHHHHHHHcCCCCccccCcEEE
Q 028138 96 QRKAEMARQADAFIALPGG--YGTLEELLEVITWAQLGIHRKPVGLLNVDGFYNS-LLSFVDKAVDEGFISPTARRIIIS 172 (213)
Q Consensus 96 ~R~~~l~~~sDa~IvlpGG--~GTL~Ei~~~~~~~~lg~~~kPiill~~~g~~~~-l~~~l~~~~~~g~i~~~~~~~i~~ 172 (213)
.....++..||++++-+-- -||++++.+.. ...+++++++++.-+-+ . +.+.|+ +.--=..
T Consensus 54 ~~~~~~l~~aD~viiTGsTlvN~Ti~~iL~~~------~~~~~vil~GpS~~~~P~~------l~~~Gv----~~v~g~~ 117 (147)
T PF04016_consen 54 EDAEEILPWADVVIITGSTLVNGTIDDILELA------RNAREVILYGPSAPLHPEA------LFDYGV----TYVGGSR 117 (147)
T ss_dssp GGHHHHGGG-SEEEEECHHCCTTTHHHHHHHT------TTSSEEEEESCCGGS-GGG------GCCTT-----SEEEEEE
T ss_pred HHHHHHHccCCEEEEEeeeeecCCHHHHHHhC------ccCCeEEEEecCchhhHHH------HHhCCC----CEEEEEE
Confidence 4566778999998876654 39999997654 24689999987643222 1 111121 0001234
Q ss_pred cCCHHHHHHHHHh
Q 028138 173 APTAKKLVRQLEE 185 (213)
Q Consensus 173 ~~~~ee~~~~l~~ 185 (213)
+.|++.+++.+++
T Consensus 118 v~d~~~~~~~i~~ 130 (147)
T PF04016_consen 118 VVDPEKVLRAISE 130 (147)
T ss_dssp ES-HHHHHHHHCT
T ss_pred EeCHHHHHHHHHc
Confidence 8899999998876
No 228
>PRK05568 flavodoxin; Provisional
Probab=28.78 E-value=1e+02 Score=23.38 Aligned_cols=30 Identities=17% Similarity=0.207 Sum_probs=14.4
Q ss_pred eEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCe
Q 028138 10 RICVFCGSSSGKKATYQEAAVELGKELVERKLD 42 (213)
Q Consensus 10 ~I~V~ggs~~~~~~~~~~~A~~lG~~lA~~G~~ 42 (213)
+|.|+..|..++... .|+.+.+.+.+.|+.
T Consensus 3 ~~~IvY~S~~GnT~~---~a~~i~~~~~~~g~~ 32 (142)
T PRK05568 3 KINIIYWSGTGNTEA---MANLIAEGAKENGAE 32 (142)
T ss_pred eEEEEEECCCchHHH---HHHHHHHHHHHCCCe
Confidence 455555555553322 345555555445543
No 229
>PRK00071 nadD nicotinic acid mononucleotide adenylyltransferase; Provisional
Probab=28.74 E-value=89 Score=25.75 Aligned_cols=26 Identities=27% Similarity=0.233 Sum_probs=18.5
Q ss_pred CceEEEEcCCCCCCCHHHHHHHHHHH
Q 028138 8 FKRICVFCGSSSGKKATYQEAAVELG 33 (213)
Q Consensus 8 ~~~I~V~ggs~~~~~~~~~~~A~~lG 33 (213)
+++|+|||||=.+..--+...|+++-
T Consensus 3 ~~~i~i~gGsFdP~H~GH~~l~~~a~ 28 (203)
T PRK00071 3 MKRIGLFGGTFDPPHYGHLAIAEEAA 28 (203)
T ss_pred CcEEEEEeeCCCccCHHHHHHHHHHH
Confidence 45799999998776766665555443
No 230
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=28.57 E-value=2.6e+02 Score=25.49 Aligned_cols=71 Identities=21% Similarity=0.312 Sum_probs=41.0
Q ss_pred HHHHHhcCeEEEec--CC----CCcHHHHHHHHHHHHhCCCCCceEEEecCccchHHHHHHHHHHHcCCCCccccCcEEE
Q 028138 99 AEMARQADAFIALP--GG----YGTLEELLEVITWAQLGIHRKPVGLLNVDGFYNSLLSFVDKAVDEGFISPTARRIIIS 172 (213)
Q Consensus 99 ~~l~~~sDa~Ivlp--GG----~GTL~Ei~~~~~~~~lg~~~kPiill~~~g~~~~l~~~l~~~~~~g~i~~~~~~~i~~ 172 (213)
.-+...||++|.-. +. -|.-.=+.|++. .++|||.-+.+|. .++ +. ......+.-
T Consensus 293 ~~~l~~aDv~v~pS~~~~~g~~Eg~p~~llEAma------~G~PVI~t~~~g~----~E~----v~-----~~~~G~lv~ 353 (406)
T PRK15427 293 KAMLDDADVFLLPSVTGADGDMEGIPVALMEAMA------VGIPVVSTLHSGI----PEL----VE-----ADKSGWLVP 353 (406)
T ss_pred HHHHHhCCEEEECCccCCCCCccCccHHHHHHHh------CCCCEEEeCCCCc----hhh----hc-----CCCceEEeC
Confidence 34668899988632 11 122234666665 5799998876542 121 11 112233444
Q ss_pred cCCHHHHHHHHHhhcC
Q 028138 173 APTAKKLVRQLEEYVP 188 (213)
Q Consensus 173 ~~~~ee~~~~l~~~~~ 188 (213)
..|++++.+.|.++..
T Consensus 354 ~~d~~~la~ai~~l~~ 369 (406)
T PRK15427 354 ENDAQALAQRLAAFSQ 369 (406)
T ss_pred CCCHHHHHHHHHHHHh
Confidence 5689988888887654
No 231
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=28.48 E-value=2.4e+02 Score=23.27 Aligned_cols=71 Identities=20% Similarity=0.392 Sum_probs=41.3
Q ss_pred HHHHHHhcCeEEEec--CCCCcHHHHHHHHHHHHhCCCCCceEEEecCccchHHHHHHHHHHHcCCCCccccCcEEEcCC
Q 028138 98 KAEMARQADAFIALP--GGYGTLEELLEVITWAQLGIHRKPVGLLNVDGFYNSLLSFVDKAVDEGFISPTARRIIISAPT 175 (213)
Q Consensus 98 ~~~l~~~sDa~Ivlp--GG~GTL~Ei~~~~~~~~lg~~~kPiill~~~g~~~~l~~~l~~~~~~g~i~~~~~~~i~~~~~ 175 (213)
..-++..||++|... .|+|+ =+.|++. .++|++.-+.++. . ++ +.++ ....+.-.+|
T Consensus 272 ~~~~~~~ad~~i~~~~~~~~~~--~~~Ea~~------~G~pvI~~~~~~~-~---~~----~~~~-----~~g~~~~~~~ 330 (377)
T cd03798 272 VPAYYAAADVFVLPSLREGFGL--VLLEAMA------CGLPVVATDVGGI-P---EI----ITDG-----ENGLLVPPGD 330 (377)
T ss_pred HHHHHHhcCeeecchhhccCCh--HHHHHHh------cCCCEEEecCCCh-H---HH----hcCC-----cceeEECCCC
Confidence 445667899877553 33333 2555554 5799988765432 2 21 1111 1123455679
Q ss_pred HHHHHHHHHhhcCC
Q 028138 176 AKKLVRQLEEYVPE 189 (213)
Q Consensus 176 ~ee~~~~l~~~~~~ 189 (213)
++++.+.|.+....
T Consensus 331 ~~~l~~~i~~~~~~ 344 (377)
T cd03798 331 PEALAEAILRLLAD 344 (377)
T ss_pred HHHHHHHHHHHhcC
Confidence 99999888886544
No 232
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=28.45 E-value=2.9e+02 Score=22.95 Aligned_cols=72 Identities=14% Similarity=0.282 Sum_probs=42.4
Q ss_pred HHHHHHHHhcCeEEEec---CCCCcHHHHHHHHHHHHhCCCCCceEEEecCccchHHHHHHHHHHHcCCCCccccCcEEE
Q 028138 96 QRKAEMARQADAFIALP---GGYGTLEELLEVITWAQLGIHRKPVGLLNVDGFYNSLLSFVDKAVDEGFISPTARRIIIS 172 (213)
Q Consensus 96 ~R~~~l~~~sDa~Ivlp---GG~GTL~Ei~~~~~~~~lg~~~kPiill~~~g~~~~l~~~l~~~~~~g~i~~~~~~~i~~ 172 (213)
+...-++..||++|.-. .|+|. =++|++. .++|||.-+..+. .. + +.+ .....++-
T Consensus 254 ~~~~~~~~~ad~~i~ps~~~e~~~~--~~~Ea~a------~G~Pvi~~~~~~~-~e---~----i~~-----~~~g~~~~ 312 (359)
T cd03823 254 EEIDDFYAEIDVLVVPSIWPENFPL--VIREALA------AGVPVIASDIGGM-AE---L----VRD-----GVNGLLFP 312 (359)
T ss_pred HHHHHHHHhCCEEEEcCcccCCCCh--HHHHHHH------CCCCEEECCCCCH-HH---H----hcC-----CCcEEEEC
Confidence 33444678899887542 34443 2556664 5799998765432 22 1 111 11233455
Q ss_pred cCCHHHHHHHHHhhcC
Q 028138 173 APTAKKLVRQLEEYVP 188 (213)
Q Consensus 173 ~~~~ee~~~~l~~~~~ 188 (213)
.+|++++.+.+.+...
T Consensus 313 ~~d~~~l~~~i~~l~~ 328 (359)
T cd03823 313 PGDAEDLAAALERLID 328 (359)
T ss_pred CCCHHHHHHHHHHHHh
Confidence 6678999999888654
No 233
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=28.34 E-value=2.2e+02 Score=26.32 Aligned_cols=75 Identities=15% Similarity=0.243 Sum_probs=41.6
Q ss_pred HHHHHHHHhcCeEEEec--CCCCcHHHHHHHHHHHHhCCCCCceEEEecCccchHHHHHHHHHHHcCCCCccccCcEEEc
Q 028138 96 QRKAEMARQADAFIALP--GGYGTLEELLEVITWAQLGIHRKPVGLLNVDGFYNSLLSFVDKAVDEGFISPTARRIIISA 173 (213)
Q Consensus 96 ~R~~~l~~~sDa~Ivlp--GG~GTL~Ei~~~~~~~~lg~~~kPiill~~~g~~~~l~~~l~~~~~~g~i~~~~~~~i~~~ 173 (213)
+....++..||++|.-. .|+|. =++|++. .++|||.-+.+|. ..+ ++ +. .......++-.
T Consensus 323 ~ev~~~~~~aDv~V~pS~~E~~g~--~vlEAmA------~G~PVI~s~~gg~-~ei---v~----~~--~~~~~G~lv~~ 384 (465)
T PLN02871 323 DELSQAYASGDVFVMPSESETLGF--VVLEAMA------SGVPVVAARAGGI-PDI---IP----PD--QEGKTGFLYTP 384 (465)
T ss_pred HHHHHHHHHCCEEEECCcccccCc--HHHHHHH------cCCCEEEcCCCCc-Hhh---hh----cC--CCCCceEEeCC
Confidence 33445678899988532 23333 2556664 5799998876543 221 11 10 00122334445
Q ss_pred CCHHHHHHHHHhhcC
Q 028138 174 PTAKKLVRQLEEYVP 188 (213)
Q Consensus 174 ~~~ee~~~~l~~~~~ 188 (213)
+|++++.+.|.+...
T Consensus 385 ~d~~~la~~i~~ll~ 399 (465)
T PLN02871 385 GDVDDCVEKLETLLA 399 (465)
T ss_pred CCHHHHHHHHHHHHh
Confidence 688888888877543
No 234
>TIGR01753 flav_short flavodoxin, short chain. Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the short chain type. Many of these are involved in sulfite reduction.
Probab=28.30 E-value=1.4e+02 Score=22.19 Aligned_cols=9 Identities=11% Similarity=0.589 Sum_probs=4.7
Q ss_pred HhcCCeEEE
Q 028138 61 HDGGRHVLG 69 (213)
Q Consensus 61 ~~~gG~viG 69 (213)
.+.|..+++
T Consensus 107 ~~~g~~~v~ 115 (140)
T TIGR01753 107 KEAGATIIA 115 (140)
T ss_pred HHCCCEEec
Confidence 345666554
No 235
>PRK14075 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=28.12 E-value=2.2e+02 Score=24.64 Aligned_cols=53 Identities=17% Similarity=0.292 Sum_probs=31.6
Q ss_pred ceEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCe----------------EEEcCCCcChhHHHHHHHHhcCCeEEEEe
Q 028138 9 KRICVFCGSSSGKKATYQEAAVELGKELVERKLD----------------LVYGGGSVGLMGLVSQAVHDGGRHVLGVI 71 (213)
Q Consensus 9 ~~I~V~ggs~~~~~~~~~~~A~~lG~~lA~~G~~----------------lv~GGg~~GlM~a~~~ga~~~gG~viGv~ 71 (213)
|+++|| .+. .-.+.+.++-.+|.+.|+. +|+=||. |.|=-+++-. +-.++||-
T Consensus 1 m~~~~~--~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~d~vi~iGGD-GT~L~a~~~~---~~Pilgin 69 (256)
T PRK14075 1 MKLGIF--YRE----EKEKEAKFLKEKISKEHEVVEFCEASASGKVTADLIIVVGGD-GTVLKAAKKV---GTPLVGFK 69 (256)
T ss_pred CEEEEE--eCc----cHHHHHHHHHHHHHHcCCeeEeecccccccCCCCEEEEECCc-HHHHHHHHHc---CCCEEEEe
Confidence 467888 222 2335667787788776642 3444565 7665544444 67788874
No 236
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=27.94 E-value=2.4e+02 Score=23.46 Aligned_cols=68 Identities=18% Similarity=0.261 Sum_probs=39.3
Q ss_pred HHHHHHhcCeEEEec--CCCCcHHHHHHHHHHHHhCCCCCceEEEecCccchHHHHHHHHHHHcCCCCccccCcEEEcCC
Q 028138 98 KAEMARQADAFIALP--GGYGTLEELLEVITWAQLGIHRKPVGLLNVDGFYNSLLSFVDKAVDEGFISPTARRIIISAPT 175 (213)
Q Consensus 98 ~~~l~~~sDa~Ivlp--GG~GTL~Ei~~~~~~~~lg~~~kPiill~~~g~~~~l~~~l~~~~~~g~i~~~~~~~i~~~~~ 175 (213)
..-++..||++|.-. .|+|+ =+.|++. .++|||.-+..+. .. ++.+ ..| +...++
T Consensus 275 ~~~~~~~adv~v~ps~~e~~~~--~~~Eama------~G~PvI~~~~~~~-~~---~~~~--~~~---------~~~~~~ 331 (375)
T cd03821 275 KAAALADADLFVLPSHSENFGI--VVAEALA------CGTPVVTTDKVPW-QE---LIEY--GCG---------WVVDDD 331 (375)
T ss_pred HHHHHhhCCEEEeccccCCCCc--HHHHHHh------cCCCEEEcCCCCH-HH---Hhhc--Cce---------EEeCCC
Confidence 344567799877644 45554 3566664 5799998775432 22 2221 122 344566
Q ss_pred HHHHHHHHHhhcC
Q 028138 176 AKKLVRQLEEYVP 188 (213)
Q Consensus 176 ~ee~~~~l~~~~~ 188 (213)
++++.+.|.+...
T Consensus 332 ~~~~~~~i~~l~~ 344 (375)
T cd03821 332 VDALAAALRRALE 344 (375)
T ss_pred hHHHHHHHHHHHh
Confidence 6777777776543
No 237
>PRK08264 short chain dehydrogenase; Validated
Probab=27.91 E-value=3.1e+02 Score=22.15 Aligned_cols=29 Identities=21% Similarity=0.291 Sum_probs=16.3
Q ss_pred CeEEEcCCCcChhHHHHHHHHhcCC-eEEEE
Q 028138 41 LDLVYGGGSVGLMGLVSQAVHDGGR-HVLGV 70 (213)
Q Consensus 41 ~~lv~GGg~~GlM~a~~~ga~~~gG-~viGv 70 (213)
..+|+||.. |+=.++++...+.|- +|+.+
T Consensus 8 ~vlItGgsg-~iG~~la~~l~~~G~~~V~~~ 37 (238)
T PRK08264 8 VVLVTGANR-GIGRAFVEQLLARGAAKVYAA 37 (238)
T ss_pred EEEEECCCc-hHHHHHHHHHHHCCcccEEEE
Confidence 345666553 666666666665554 55444
No 238
>PF11834 DUF3354: Domain of unknown function (DUF3354); InterPro: IPR021789 Potassium channels take part in important processes of higher plants, including opening and closing of stomatal pores and leaf movement. Inward rectifying potassium (K(+)in) channels play an important role in turgor regulation and ion uptake in higher plants. All of them comprise, from their N-terminal to their C-terminal ends: a short hydrophilic region, a hydrophobic region structurally analogous and partially homologous to the transmembrane domain of voltage-gated animal channels from the Shaker superfamily, a putative cyclic nucleotide-binding domain, and a conserved C-terminal KHA domain. Between these last two regions, some of them (AKT1, AKT2 and SKT1) contain an ankyrin-repeat domain with six repeats homologous to those of human erythrocyte ankyrin. This entry represents the KHA domain which is unique to plant K(+)in channels. The KHA domain contains two high-homology blocks enriched for hydrophobic and acidic residues, respectively. The KHA domain is essential for interaction of plant K(+)in channels. The KHA domain mediates tetramerization and/or stabilisation of the heteromers [, , ].
Probab=27.84 E-value=1.3e+02 Score=20.94 Aligned_cols=33 Identities=39% Similarity=0.674 Sum_probs=22.9
Q ss_pred CeEEEecCCCCcHHHHHHHHHHHHhCCCCCceEEEecCc
Q 028138 106 DAFIALPGGYGTLEELLEVITWAQLGIHRKPVGLLNVDG 144 (213)
Q Consensus 106 Da~IvlpGG~GTL~Ei~~~~~~~~lg~~~kPiill~~~g 144 (213)
=-+|.|| +|++|+..+.. .++|.. |--+++.+|
T Consensus 19 GKvi~lP---~SleeLl~ia~-~kfg~~--~~~v~~~dg 51 (69)
T PF11834_consen 19 GKVIWLP---DSLEELLKIAS-EKFGFS--ATKVLNEDG 51 (69)
T ss_pred CEEEEcC---ccHHHHHHHHH-HHhCCC--ceEEEcCCC
Confidence 4578888 69999998765 567764 555555443
No 239
>PRK05866 short chain dehydrogenase; Provisional
Probab=27.81 E-value=3.2e+02 Score=23.45 Aligned_cols=32 Identities=22% Similarity=0.183 Sum_probs=19.0
Q ss_pred ceEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEcCC
Q 028138 9 KRICVFCGSSSGKKATYQEAAVELGKELVERKLDLVYGGG 48 (213)
Q Consensus 9 ~~I~V~ggs~~~~~~~~~~~A~~lG~~lA~~G~~lv~GGg 48 (213)
++|-|.|+++. ..+.+++.|+++|+.|+..+-
T Consensus 41 k~vlItGasgg--------IG~~la~~La~~G~~Vi~~~R 72 (293)
T PRK05866 41 KRILLTGASSG--------IGEAAAEQFARRGATVVAVAR 72 (293)
T ss_pred CEEEEeCCCcH--------HHHHHHHHHHHCCCEEEEEEC
Confidence 45666655531 345666666777777765443
No 240
>smart00854 PGA_cap Bacterial capsule synthesis protein PGA_cap. This protein is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein.
Probab=27.68 E-value=79 Score=26.66 Aligned_cols=20 Identities=30% Similarity=0.451 Sum_probs=14.9
Q ss_pred HHHHHHHHHCCCeEEEcCCC
Q 028138 30 VELGKELVERKLDLVYGGGS 49 (213)
Q Consensus 30 ~~lG~~lA~~G~~lv~GGg~ 49 (213)
+++++.|++.|.++|.||.+
T Consensus 195 ~~~A~~l~~~G~DvIiG~H~ 214 (239)
T smart00854 195 RELAHALIDAGADVVIGHHP 214 (239)
T ss_pred HHHHHHHHHcCCCEEEcCCC
Confidence 56777777778888887775
No 241
>TIGR01752 flav_long flavodoxin, long chain. Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the long chain type, typical for nitrogen fixation but associated with pyruvate formate-lyase activation and cobalamin-dependent methionine synthase activity in E. coli.
Probab=27.48 E-value=1.7e+02 Score=23.20 Aligned_cols=20 Identities=30% Similarity=0.680 Sum_probs=9.8
Q ss_pred hHHHHHHHHhcCCeEEEEeC
Q 028138 53 MGLVSQAVHDGGRHVLGVIP 72 (213)
Q Consensus 53 M~a~~~ga~~~gG~viGv~P 72 (213)
|+.+.+-..+.|..++|-.|
T Consensus 100 ~~~l~~~l~~~G~~~ig~~~ 119 (167)
T TIGR01752 100 MGILYDKIKARGAKVVGFWP 119 (167)
T ss_pred HHHHHHHHHHcCCeEEceec
Confidence 44444444445555555543
No 242
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=27.36 E-value=4.8e+02 Score=23.80 Aligned_cols=102 Identities=14% Similarity=0.214 Sum_probs=59.6
Q ss_pred ceEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCeE-EEcCCCcChhHHHHHHHHhcCCeEEEEeC-CCCCCCCCCCCCCc
Q 028138 9 KRICVFCGSSSGKKATYQEAAVELGKELVERKLDL-VYGGGSVGLMGLVSQAVHDGGRHVLGVIP-KTLTPREITGDPVG 86 (213)
Q Consensus 9 ~~I~V~ggs~~~~~~~~~~~A~~lG~~lA~~G~~l-v~GGg~~GlM~a~~~ga~~~gG~viGv~P-~~~~~~e~~~~~~~ 86 (213)
-++=|++-.+.. -|+-. ..-+-.+.|.+.|+.+ +|-.-. +. .++...+.|. +.|.| .... ..+ ..
T Consensus 168 iKlEvi~e~~~l-lpd~~-~~v~aa~~L~~~Gf~v~~yc~~d--~~--~a~~l~~~g~--~avmPl~~pI----Gsg-~g 234 (326)
T PRK11840 168 VKLEVLGDAKTL-YPDMV-ETLKATEILVKEGFQVMVYCSDD--PI--AAKRLEDAGA--VAVMPLGAPI----GSG-LG 234 (326)
T ss_pred EEEEEcCCCCCc-ccCHH-HHHHHHHHHHHCCCEEEEEeCCC--HH--HHHHHHhcCC--EEEeeccccc----cCC-CC
Confidence 345566544432 33332 3445677788899998 665432 33 3344444454 66766 2211 111 00
Q ss_pred eeeecCCHHHHHHHHHHhcCeEEEecCCCCcHHHHHHHHHHH
Q 028138 87 EVKTVSDMHQRKAEMARQADAFIALPGGYGTLEELLEVITWA 128 (213)
Q Consensus 87 ~~~~~~~~~~R~~~l~~~sDa~IvlpGG~GTL~Ei~~~~~~~ 128 (213)
+ . =.+.-+.+++..+.-|++.+|+||-+.+..++.+.
T Consensus 235 ---v-~-~p~~i~~~~e~~~vpVivdAGIg~~sda~~AmelG 271 (326)
T PRK11840 235 ---I-Q-NPYTIRLIVEGATVPVLVDAGVGTASDAAVAMELG 271 (326)
T ss_pred ---C-C-CHHHHHHHHHcCCCcEEEeCCCCCHHHHHHHHHcC
Confidence 0 0 12334556677899999999999999999998653
No 243
>PRK06756 flavodoxin; Provisional
Probab=27.33 E-value=1.6e+02 Score=22.60 Aligned_cols=17 Identities=12% Similarity=0.325 Sum_probs=8.3
Q ss_pred hHHHHHHHHhcCCeEEE
Q 028138 53 MGLVSQAVHDGGRHVLG 69 (213)
Q Consensus 53 M~a~~~ga~~~gG~viG 69 (213)
+....+-..+.|..+++
T Consensus 103 ~~~l~~~l~~~g~~~v~ 119 (148)
T PRK06756 103 VDILIEKLQERGAAVVL 119 (148)
T ss_pred HHHHHHHHHHCCCEEcC
Confidence 33334444455666554
No 244
>PRK06924 short chain dehydrogenase; Provisional
Probab=27.33 E-value=1.1e+02 Score=25.16 Aligned_cols=29 Identities=10% Similarity=0.256 Sum_probs=0.0
Q ss_pred CceEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCeEE
Q 028138 8 FKRICVFCGSSSGKKATYQEAAVELGKELVERKLDLV 44 (213)
Q Consensus 8 ~~~I~V~ggs~~~~~~~~~~~A~~lG~~lA~~G~~lv 44 (213)
|++|.|.|+++ -..+.+.+.|+++|+.|+
T Consensus 1 ~k~vlItGasg--------giG~~ia~~l~~~g~~V~ 29 (251)
T PRK06924 1 MRYVIITGTSQ--------GLGEAIANQLLEKGTHVI 29 (251)
T ss_pred CcEEEEecCCc--------hHHHHHHHHHHhcCCEEE
No 245
>TIGR00253 RNA_bind_YhbY putative RNA-binding protein, YhbY family. A combination of crystal structure, molecular modeling, and bioinformatic data together suggest that members of this family, including YhbY of E. coli, are RNA binding proteins.
Probab=27.30 E-value=1.9e+02 Score=21.43 Aligned_cols=52 Identities=15% Similarity=0.233 Sum_probs=34.2
Q ss_pred CCCceEEEecCccchHHHHHHHH-HHHcCCCCccccCcEEEcCCHHHHHHHHHhh
Q 028138 133 HRKPVGLLNVDGFYNSLLSFVDK-AVDEGFISPTARRIIISAPTAKKLVRQLEEY 186 (213)
Q Consensus 133 ~~kPiill~~~g~~~~l~~~l~~-~~~~g~i~~~~~~~i~~~~~~ee~~~~l~~~ 186 (213)
+-+|++.++-+|.-+.+++.++. +-....|.=..... ..+|..|+.+.|++.
T Consensus 15 ~l~p~v~IGK~Glt~~vi~ei~~aL~~hELIKVkvl~~--~~~~~~e~a~~i~~~ 67 (95)
T TIGR00253 15 HLKPVVLVGKNGLTEGVIKEIEQALEHRELIKVKVATE--DREDKTLIAEALVKE 67 (95)
T ss_pred CCCCeEEECCCCCCHHHHHHHHHHHHhCCcEEEEecCC--ChhHHHHHHHHHHHH
Confidence 45999999999999999999876 44445543222211 134566677777663
No 246
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=27.13 E-value=1.2e+02 Score=26.91 Aligned_cols=52 Identities=25% Similarity=0.360 Sum_probs=31.7
Q ss_pred hcCeEEEecCCCCcHHHHHHHHHHHHhCCCCCceEEEecC--ccch-----HHHHHHHHHHHcCC
Q 028138 104 QADAFIALPGGYGTLEELLEVITWAQLGIHRKPVGLLNVD--GFYN-----SLLSFVDKAVDEGF 161 (213)
Q Consensus 104 ~sDa~IvlpGG~GTL~Ei~~~~~~~~lg~~~kPiill~~~--g~~~-----~l~~~l~~~~~~g~ 161 (213)
.+|. |+.-||=||+.+.+..+. ..++||+-+|.+ ||.. .+.+.++++.+..|
T Consensus 62 ~~d~-vi~~GGDGt~l~~~~~~~-----~~~~Pvlgin~G~lGFl~~~~~~~~~~~l~~~~~g~~ 120 (295)
T PRK01231 62 VCDL-VIVVGGDGSLLGAARALA-----RHNVPVLGINRGRLGFLTDIRPDELEFKLAEVLDGHY 120 (295)
T ss_pred CCCE-EEEEeCcHHHHHHHHHhc-----CCCCCEEEEeCCcccccccCCHHHHHHHHHHHHcCCc
Confidence 3554 555688999998875542 356899888864 4443 34444555544333
No 247
>TIGR00167 cbbA ketose-bisphosphate aldolases. fructose-bisphosphate and tagatose-bisphosphate aldolase.
Probab=26.93 E-value=58 Score=28.97 Aligned_cols=31 Identities=23% Similarity=0.369 Sum_probs=24.5
Q ss_pred HHHHHHHHHhcCeEEEecCCCCcHHHHHHHH
Q 028138 95 HQRKAEMARQADAFIALPGGYGTLEELLEVI 125 (213)
Q Consensus 95 ~~R~~~l~~~sDa~IvlpGG~GTL~Ei~~~~ 125 (213)
++|.+-+-+..|.-+||.||.|+-+|-+.-.
T Consensus 195 ~~~L~~I~~~v~vPLVlHGgSG~~~e~~~~a 225 (288)
T TIGR00167 195 FERLEEIQKYVNLPLVLHGGSGIPDEEIKKA 225 (288)
T ss_pred HHHHHHHHHHhCCCEEEeCCCCCCHHHHHHH
Confidence 4566667777799999999999998776543
No 248
>TIGR00147 lipid kinase, YegS/Rv2252/BmrU family. The E. coli member of this family, YegS has been purified and shown to have phosphatidylglycerol kinase activity. The member from M. tuberculosis, Rv2252, has diacylglycerol kinase activity. BmrU from B. subtilis is in an operon with multidrug efflux transporter Bmr, but is uncharacterized.
Probab=26.80 E-value=1.8e+02 Score=25.09 Aligned_cols=32 Identities=28% Similarity=0.561 Sum_probs=21.4
Q ss_pred cCeEEEecCCCCcHHHHHHHHHHHHhCCCCC-ceEEEe
Q 028138 105 ADAFIALPGGYGTLEELLEVITWAQLGIHRK-PVGLLN 141 (213)
Q Consensus 105 sDa~IvlpGG~GTL~Ei~~~~~~~~lg~~~k-Piill~ 141 (213)
.| +|+.-||=||+.|+...+. + ...+ |+.++.
T Consensus 58 ~d-~ivv~GGDGTl~~v~~~l~--~--~~~~~~lgiiP 90 (293)
T TIGR00147 58 VD-TVIAGGGDGTINEVVNALI--Q--LDDIPALGILP 90 (293)
T ss_pred CC-EEEEECCCChHHHHHHHHh--c--CCCCCcEEEEc
Confidence 45 5666899999999987763 1 1233 666664
No 249
>PF01985 CRS1_YhbY: CRS1 / YhbY (CRM) domain; InterPro: IPR001890 The CRM domain is an ~100-amino acid RNA-binding domain. The name chloroplast RNA splicing and ribosome maturation (CRM) has been suggested to reflect the functions established for the four characterised members of the family: Zea mays (Maize) CRS1 (Q9FYT6 from SWISSPROT), CAF1 (Q84N49 from SWISSPROT) and CAF2 (Q84N48 from SWISSPROT) proteins and the Escherichia coli protein YhbY (P0AGK4 from SWISSPROT). The CRM domain is found in eubacteria, archaea, and plants. The CRM domain is represented as a stand-alone protein in archaea and bacteria, and in single- and multi-domain proteins in plants. It has been suggested that prokaryotic CRM proteins existed as ribosome-associated proteins prior to the divergence of archaea and bacteria, and that they were co-opted in the plant lineage as RNA binding modules by incorporation into diverse protein contexts. Plant CRM domains are predicted to reside not only in the chloroplast, but also in the mitochondrion and the nucleo/cytoplasmic compartment. The diversity of the CRM domain family in plants suggests a diverse set of RNA targets [, ]. The CRM domain is a compact alpha/beta domain consisting of a four-stranded beta sheet and three alpha helices with an alpha-beta-alpha-beta-alpha-beta-beta topology. The beta sheet face is basic, consistent with a role in RNA binding. Proximal to the basic beta sheet face is another moiety that could contribute to nucleic acid recognition. Connecting strand beta1 and helix alpha2 is a loop with a six amino acid motif, GxxG flanked by large aliphatic residues, within which one 'x' is typically a basic residue []. Escherichia coli YhbY is associated with pre-50S ribosomal subunits, which implies a function in ribosome assembly. GFP fused to a single-domain CRM protein from maize localises to the nucleolus, suggesting that an analogous activity may have been retained in plants []. A CRM domain containing protein in plant chloroplasts has been shown to function in group I and II intron splicing []. In vitro experiments with an isolated maize CRM domain have shown it to have RNA binding activity. These and other results suggest that the CRM domain evolved in the context of ribosome function prior to the divergence of Archaea and Bacteria, that this function has been maintained in extant prokaryotes, and that the domain was recruited to serve as an RNA binding module during the evolution of plant genomes []. YhbY has a fold similar to that of the C-terminal domain of translation initiation factor 3 (IF3C), which binds to 16S rRNA in the 30S ribosome [].; GO: 0003723 RNA binding; PDB: 1RQ8_A 1JO0_B 1LN4_A.
Probab=26.77 E-value=61 Score=23.15 Aligned_cols=56 Identities=20% Similarity=0.287 Sum_probs=29.1
Q ss_pred HhCCCCCceEEEecCccchHHHHHHHH-HHHcCCCCccccCcEEEcCCHHHHHHHHHhh
Q 028138 129 QLGIHRKPVGLLNVDGFYNSLLSFVDK-AVDEGFISPTARRIIISAPTAKKLVRQLEEY 186 (213)
Q Consensus 129 ~lg~~~kPiill~~~g~~~~l~~~l~~-~~~~g~i~~~~~~~i~~~~~~ee~~~~l~~~ 186 (213)
+.+.+-+|++.++.+|.++.+.+.++. +.....+.=.... ...+|.+++.+.|.+.
T Consensus 11 ~~a~~l~p~v~IGk~Glt~~vi~~i~~~l~~~eLvKVk~~~--~~~~~~~~~~~~l~~~ 67 (84)
T PF01985_consen 11 KLAHHLKPVVQIGKNGLTDGVIEEIDDALEKHELVKVKVLG--NCREDRKEIAEQLAEK 67 (84)
T ss_dssp HHHTTC--SEEE-TTSS-HHHHHHHHHHHHHHSEEEEEETT----HHHHHHHHHHHHHH
T ss_pred HHhcCCCCeEEECCCCCCHHHHHHHHHHHHhCCeeEEEEcc--CCHHHHHHHHHHHHHH
Confidence 333445999999999999999998876 4433333211111 1233455566656553
No 250
>TIGR01016 sucCoAbeta succinyl-CoA synthetase, beta subunit. This family contains a split seen both in a maximum parsimony tree (which ignores gaps) and in the gap pattern near position 85 of the seed alignment. Eukaryotic and most bacterial sequences are longer and contain a region similar to TXQTXXXG. Sequences from Deinococcus radiodurans, Mycobacterium tuberculosis, Streptomyces coelicolor, and the Archaea are 6 amino acids shorter in that region and contain a motif resembling [KR]G
Probab=26.71 E-value=4.9e+02 Score=23.64 Aligned_cols=70 Identities=16% Similarity=0.141 Sum_probs=39.9
Q ss_pred cCeEEE-ecCCCCcHHHHHHHHHHHHhCC-CCCceEEEecCc-cchHHHHHHHHHHHcCCCCccccCcEEEcCCHHHHHH
Q 028138 105 ADAFIA-LPGGYGTLEELLEVITWAQLGI-HRKPVGLLNVDG-FYNSLLSFVDKAVDEGFISPTARRIIISAPTAKKLVR 181 (213)
Q Consensus 105 sDa~Iv-lpGG~GTL~Ei~~~~~~~~lg~-~~kPiill~~~g-~~~~l~~~l~~~~~~g~i~~~~~~~i~~~~~~ee~~~ 181 (213)
.|++++ ++||+.-.+++.+.+.-..-.. .+|||++-. .| -.+...+. +.+.|+ .+.+.++++++++
T Consensus 311 vd~ilv~i~gg~~~~~~va~~i~~a~~~~~~~kPvvv~~-~g~~~~~~~~~---L~~~G~-------~ip~~~~~~~Av~ 379 (386)
T TIGR01016 311 VKVVFINIFGGITRCDLVAKGLVEALKEVGVNVPVVVRL-EGTNVEEGKKI---LAESGL-------NIIFATSMEEAAE 379 (386)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHhcCCCCcEEEEe-CCccHHHHHHH---HHHcCC-------CccccCCHHHHHH
Confidence 366554 5688877788877665322111 238995543 34 22223322 333342 2558999999998
Q ss_pred HHHh
Q 028138 182 QLEE 185 (213)
Q Consensus 182 ~l~~ 185 (213)
...+
T Consensus 380 ~~~~ 383 (386)
T TIGR01016 380 KAVE 383 (386)
T ss_pred HHHH
Confidence 7764
No 251
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=26.66 E-value=1.8e+02 Score=23.55 Aligned_cols=35 Identities=6% Similarity=0.173 Sum_probs=25.3
Q ss_pred CCceEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCeEE
Q 028138 7 RFKRICVFCGSSSGKKATYQEAAVELGKELVERKLDLV 44 (213)
Q Consensus 7 ~~~~I~V~ggs~~~~~~~~~~~A~~lG~~lA~~G~~lv 44 (213)
.++.|+|. |...+..... .|..|+..+|+.|..++
T Consensus 16 ~~kvI~v~-s~kgG~GKTt--~a~~LA~~la~~G~rVl 50 (204)
T TIGR01007 16 EIKVLLIT-SVKPGEGKST--TSANIAVAFAQAGYKTL 50 (204)
T ss_pred CCcEEEEe-cCCCCCCHHH--HHHHHHHHHHhCCCeEE
Confidence 36788888 4444445554 57889999999998765
No 252
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=26.57 E-value=2.5e+02 Score=25.49 Aligned_cols=72 Identities=17% Similarity=0.276 Sum_probs=41.5
Q ss_pred HHHHHHHHhcCeEEEe-cC--CCCcHHHHHHHHHHHHhCCCCCceEEEecCccchHHHHHHHHHHHcCCCCccccCcEEE
Q 028138 96 QRKAEMARQADAFIAL-PG--GYGTLEELLEVITWAQLGIHRKPVGLLNVDGFYNSLLSFVDKAVDEGFISPTARRIIIS 172 (213)
Q Consensus 96 ~R~~~l~~~sDa~Ivl-pG--G~GTL~Ei~~~~~~~~lg~~~kPiill~~~g~~~~l~~~l~~~~~~g~i~~~~~~~i~~ 172 (213)
+....++..||++|.+ +. |.|--.-++|++. .++|||..+.+| .. + ++.++ ....+
T Consensus 306 ~~~~~~l~~aDv~v~~~~~~~~~~~p~~~~Eama------~G~PVI~s~~~~-~~---e----iv~~~-----~~G~l-- 364 (415)
T cd03816 306 EDYPKLLASADLGVSLHTSSSGLDLPMKVVDMFG------CGLPVCALDFKC-ID---E----LVKHG-----ENGLV-- 364 (415)
T ss_pred HHHHHHHHhCCEEEEccccccccCCcHHHHHHHH------cCCCEEEeCCCC-HH---H----HhcCC-----CCEEE--
Confidence 3444467899999853 21 2333335666664 579999877542 22 2 22221 11222
Q ss_pred cCCHHHHHHHHHhhcC
Q 028138 173 APTAKKLVRQLEEYVP 188 (213)
Q Consensus 173 ~~~~ee~~~~l~~~~~ 188 (213)
++|++++.+.|.+...
T Consensus 365 v~d~~~la~~i~~ll~ 380 (415)
T cd03816 365 FGDSEELAEQLIDLLS 380 (415)
T ss_pred ECCHHHHHHHHHHHHh
Confidence 2689999888887644
No 253
>KOG2683 consensus Sirtuin 4 and related class II sirtuins (SIR2 family) [Chromatin structure and dynamics; Transcription]
Probab=26.48 E-value=77 Score=27.95 Aligned_cols=40 Identities=18% Similarity=0.352 Sum_probs=27.0
Q ss_pred HHHhcCeEEEecCCCCcHHHHHHHHHHHHhCCCCCceEEEecC
Q 028138 101 MARQADAFIALPGGYGTLEELLEVITWAQLGIHRKPVGLLNVD 143 (213)
Q Consensus 101 l~~~sDa~IvlpGG~GTL~Ei~~~~~~~~lg~~~kPiill~~~ 143 (213)
++..||++++|+-..=+++-.-.+.. ....++||.++|++
T Consensus 243 ~v~e~dg~LvlGsSL~v~Sg~r~i~~---a~~~k~pi~IvNIG 282 (305)
T KOG2683|consen 243 KVKECDGFLVLGSSLMVLSGFRFIRH---AHEKKKPIAIVNIG 282 (305)
T ss_pred HHhccCceEEechhHHHHHHHHHHHH---HHhhcCcEEEEecC
Confidence 46789999999766655554433321 12347999999985
No 254
>PRK08105 flavodoxin; Provisional
Probab=26.16 E-value=1.4e+02 Score=23.42 Aligned_cols=26 Identities=19% Similarity=0.284 Sum_probs=15.0
Q ss_pred EEcCCC------cChhHHHHHHHHhcCCeEEE
Q 028138 44 VYGGGS------VGLMGLVSQAVHDGGRHVLG 69 (213)
Q Consensus 44 v~GGg~------~GlM~a~~~ga~~~gG~viG 69 (213)
|.|-|. .+.+..+.+-..+.|+..++
T Consensus 89 vfGlGds~Y~~fc~~~~~ld~~l~~lGa~~v~ 120 (149)
T PRK08105 89 VIALGDSSYDNFCGAGKQFDALLQEQGAKRVG 120 (149)
T ss_pred EEeeecCCHHHHHHHHHHHHHHHHHCCCeEee
Confidence 567665 33444444445557777766
No 255
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=26.15 E-value=50 Score=28.84 Aligned_cols=93 Identities=17% Similarity=0.272 Sum_probs=50.5
Q ss_pred HHHHHHHHHCCCeEEEcCCCcChhHHHHHHHHhcCCeEEEEeCCCCCCCCCCCCCCceeeecCCHHHHHHHHHHhcCeEE
Q 028138 30 VELGKELVERKLDLVYGGGSVGLMGLVSQAVHDGGRHVLGVIPKTLTPREITGDPVGEVKTVSDMHQRKAEMARQADAFI 109 (213)
Q Consensus 30 ~~lG~~lA~~G~~lv~GGg~~GlM~a~~~ga~~~gG~viGv~P~~~~~~e~~~~~~~~~~~~~~~~~R~~~l~~~sDa~I 109 (213)
.+-.+.|.+.||.|.-=..+ .=.+++--.+.|.. -|+|-.- |+..-.=..+ ..--+++.+.+|.-|
T Consensus 113 l~Aae~Lv~eGF~VlPY~~~---D~v~akrL~d~Gca--avMPlgs--------PIGSg~Gi~n-~~~l~~i~~~~~vPv 178 (247)
T PF05690_consen 113 LKAAEILVKEGFVVLPYCTD---DPVLAKRLEDAGCA--AVMPLGS--------PIGSGRGIQN-PYNLRIIIERADVPV 178 (247)
T ss_dssp HHHHHHHHHTT-EEEEEE-S----HHHHHHHHHTT-S--EBEEBSS--------STTT---SST-HHHHHHHHHHGSSSB
T ss_pred HHHHHHHHHCCCEEeecCCC---CHHHHHHHHHCCCC--EEEeccc--------ccccCcCCCC-HHHHHHHHHhcCCcE
Confidence 45567778888888621222 34566767777765 3444211 1111000001 123556778889999
Q ss_pred EecCCCCcHHHHHHHHHHHHhCCCCCceEEEec
Q 028138 110 ALPGGYGTLEELLEVITWAQLGIHRKPVGLLNV 142 (213)
Q Consensus 110 vlpGG~GTL~Ei~~~~~~~~lg~~~kPiill~~ 142 (213)
++-+|+||.++..+++.+ | -=-||+|+
T Consensus 179 IvDAGiG~pSdaa~AMEl---G---~daVLvNT 205 (247)
T PF05690_consen 179 IVDAGIGTPSDAAQAMEL---G---ADAVLVNT 205 (247)
T ss_dssp EEES---SHHHHHHHHHT---T----SEEEESH
T ss_pred EEeCCCCCHHHHHHHHHc---C---Cceeehhh
Confidence 999999999999999864 3 33366775
No 256
>PF04230 PS_pyruv_trans: Polysaccharide pyruvyl transferase; InterPro: IPR007345 Pyruvyl-transferases are involved in peptidoglycan-associated polymer biosynthesis. CsaB in Bacillus anthracis is necessary for the non-covalent anchoring of proteins containing an SLH (S-layer homology) domain to peptidoglycan-associated pyruvylated polysaccharides. WcaK and AmsJ are involved in the biosynthesis of colanic acid in Escherichia coli and of amylovoran in Erwinia amylovora [, ].
Probab=26.11 E-value=97 Score=25.09 Aligned_cols=88 Identities=20% Similarity=0.268 Sum_probs=41.1
Q ss_pred HhcCeEEEecCC-----CCcHHHHHHHHHHHHh-CCCCCceEEEecC-c-cchHHHH-HHHHHHHcCCCCccccCcEEEc
Q 028138 103 RQADAFIALPGG-----YGTLEELLEVITWAQL-GIHRKPVGLLNVD-G-FYNSLLS-FVDKAVDEGFISPTARRIIISA 173 (213)
Q Consensus 103 ~~sDa~IvlpGG-----~GTL~Ei~~~~~~~~l-g~~~kPiill~~~-g-~~~~l~~-~l~~~~~~g~i~~~~~~~i~~~ 173 (213)
..+|.+|+.+|| ..+.......+.+... ...++|+++++.+ | +.+.... .++.+.+. .+ +..+
T Consensus 62 ~~~~~vii~GGg~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~g~g~gp~~~~~~~~~~~~~l~~-------~~-~i~v 133 (286)
T PF04230_consen 62 KNADDVIIGGGGGSDNNFIDLWSLPIFLRWLFLAKKLGKPVIILGQGIGPFRSEEFKKLLRRILSK-------AD-YISV 133 (286)
T ss_pred ccCCeEEEECCcccccCCCcchhhHHHHHHHHHHHhcCCCeEEECceECccCCHHHHHHHHHHHhC-------CC-EEEE
Confidence 467777777775 2222222111222222 2468999999763 1 3333332 33433322 12 2455
Q ss_pred CCHHHHHHHHHhhcCC-Cccccccccc
Q 028138 174 PTAKKLVRQLEEYVPE-HDEITSKLVW 199 (213)
Q Consensus 174 ~~~ee~~~~l~~~~~~-~~~~~~~~~w 199 (213)
.|.. -.+.+.+...+ ..+..+-.+|
T Consensus 134 RD~~-S~~~l~~~g~~~~~~~~~D~af 159 (286)
T PF04230_consen 134 RDEY-SYELLKKLGISGNVKLVPDPAF 159 (286)
T ss_pred CCHH-HHHHHHHcCCCCCcEEEeCchh
Confidence 5555 33355554433 4445555555
No 257
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=26.07 E-value=3.4e+02 Score=23.83 Aligned_cols=67 Identities=13% Similarity=0.160 Sum_probs=37.3
Q ss_pred HHHHHHHhcCeEEEecCCCCcHHHHHHHHHHHHhCCCCCceEEEecCccchHHHHHHHHHHHcCCCCccccCcEEEcCCH
Q 028138 97 RKAEMARQADAFIALPGGYGTLEELLEVITWAQLGIHRKPVGLLNVDGFYNSLLSFVDKAVDEGFISPTARRIIISAPTA 176 (213)
Q Consensus 97 R~~~l~~~sDa~IvlpGG~GTL~Ei~~~~~~~~lg~~~kPiill~~~g~~~~l~~~l~~~~~~g~i~~~~~~~i~~~~~~ 176 (213)
+...++..||++|. +.| +. +.|++. .++|+|.....+-+..+ +..| ..+.+..|+
T Consensus 267 ~~~~~l~~ad~vv~-~Sg--~~--~~EA~a------~g~PvI~~~~~~~~~e~-------~~~g-------~~~lv~~d~ 321 (365)
T TIGR00236 267 DFLNLAANSHLILT-DSG--GV--QEEAPS------LGKPVLVLRDTTERPET-------VEAG-------TNKLVGTDK 321 (365)
T ss_pred HHHHHHHhCCEEEE-CCh--hH--HHHHHH------cCCCEEECCCCCCChHH-------HhcC-------ceEEeCCCH
Confidence 33445677887754 432 32 345554 47999986322223221 1122 123345799
Q ss_pred HHHHHHHHhhcC
Q 028138 177 KKLVRQLEEYVP 188 (213)
Q Consensus 177 ee~~~~l~~~~~ 188 (213)
+++.+.+.+...
T Consensus 322 ~~i~~ai~~ll~ 333 (365)
T TIGR00236 322 ENITKAAKRLLT 333 (365)
T ss_pred HHHHHHHHHHHh
Confidence 999998888653
No 258
>PLN02591 tryptophan synthase
Probab=26.06 E-value=2.8e+02 Score=24.05 Aligned_cols=41 Identities=20% Similarity=0.417 Sum_probs=25.8
Q ss_pred cHHHHHHHHHHHHhCCCCCceEEEecCccchHH-----HHHHHHHHHcCC
Q 028138 117 TLEELLEVITWAQLGIHRKPVGLLNVDGFYNSL-----LSFVDKAVDEGF 161 (213)
Q Consensus 117 TL~Ei~~~~~~~~lg~~~kPiill~~~g~~~~l-----~~~l~~~~~~g~ 161 (213)
|++.+++.+.-.+ ...+.|++++. ||+++ .+|++.+.+.|.
T Consensus 62 ~~~~~~~~~~~~r-~~~~~p~ilm~---Y~N~i~~~G~~~F~~~~~~aGv 107 (250)
T PLN02591 62 TLDSVISMLKEVA-PQLSCPIVLFT---YYNPILKRGIDKFMATIKEAGV 107 (250)
T ss_pred CHHHHHHHHHHHh-cCCCCCEEEEe---cccHHHHhHHHHHHHHHHHcCC
Confidence 6677777764322 23567988874 77654 446777777664
No 259
>PRK04155 chaperone protein HchA; Provisional
Probab=26.00 E-value=69 Score=28.45 Aligned_cols=34 Identities=29% Similarity=0.226 Sum_probs=21.4
Q ss_pred eEEEecCCCCcHHHHHHHHHHHHh----CCCCCceEEE
Q 028138 107 AFIALPGGYGTLEELLEVITWAQL----GIHRKPVGLL 140 (213)
Q Consensus 107 a~IvlpGG~GTL~Ei~~~~~~~~l----g~~~kPiill 140 (213)
..|++|||.|.+..+.+--.+.++ ..++|||..+
T Consensus 149 DaV~iPGG~g~~~dL~~~~~l~~ll~~~~~~~K~VaAI 186 (287)
T PRK04155 149 AAVFIPGGHGALIGLPESEDVAAALQWALDNDRFIITL 186 (287)
T ss_pred cEEEECCCCchHHHHhhCHHHHHHHHHHHHcCCEEEEE
Confidence 477899999997766433222222 1356888766
No 260
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=25.81 E-value=1.8e+02 Score=27.26 Aligned_cols=69 Identities=22% Similarity=0.232 Sum_probs=38.2
Q ss_pred eEEEcCCCcChhHHHHHHHHhcCCeEEEEeCCCCCCCCCCCCCCceeeecCCHHHHHHHHHHhcCeEEEecCCCCcHHH
Q 028138 42 DLVYGGGSVGLMGLVSQAVHDGGRHVLGVIPKTLTPREITGDPVGEVKTVSDMHQRKAEMARQADAFIALPGGYGTLEE 120 (213)
Q Consensus 42 ~lv~GGg~~GlM~a~~~ga~~~gG~viGv~P~~~~~~e~~~~~~~~~~~~~~~~~R~~~l~~~sDa~IvlpGG~GTL~E 120 (213)
.+|.|.|+.|.. +++.++..|.+|+.+-.+.....+.....+ ...++. . .+..+|.+|...|..+.+++
T Consensus 198 VvViG~G~IG~~--vA~~ak~~Ga~ViV~d~dp~r~~~A~~~G~----~v~~le---e-al~~aDVVItaTG~~~vI~~ 266 (406)
T TIGR00936 198 VVVAGYGWCGKG--IAMRARGMGARVIVTEVDPIRALEAAMDGF----RVMTME---E-AAKIGDIFITATGNKDVIRG 266 (406)
T ss_pred EEEECCCHHHHH--HHHHHhhCcCEEEEEeCChhhHHHHHhcCC----EeCCHH---H-HHhcCCEEEECCCCHHHHHH
Confidence 446787765544 556667778888887322211111111111 112332 2 35789999999887777764
No 261
>COG0061 nadF NAD kinase [Coenzyme metabolism]
Probab=25.78 E-value=92 Score=27.34 Aligned_cols=47 Identities=30% Similarity=0.433 Sum_probs=0.0
Q ss_pred EEEecCCCCcHHHHHHHHHHHHhCCCCCceEEEecC--ccchHHH-HHHHHHHHc
Q 028138 108 FIALPGGYGTLEELLEVITWAQLGIHRKPVGLLNVD--GFYNSLL-SFVDKAVDE 159 (213)
Q Consensus 108 ~IvlpGG~GTL~Ei~~~~~~~~lg~~~kPiill~~~--g~~~~l~-~~l~~~~~~ 159 (213)
+|+..||=||+-....... ..++||+-+|.+ ||+.++. +.+++..++
T Consensus 58 ~ivvlGGDGtlL~~~~~~~-----~~~~pilgin~G~lGFLt~~~~~~~~~~~~~ 107 (281)
T COG0061 58 LIVVLGGDGTLLRAARLLA-----RLDIPVLGINLGHLGFLTDFEPDELEKALDA 107 (281)
T ss_pred EEEEeCCcHHHHHHHHHhc-----cCCCCEEEEeCCCcccccccCHHHHHHHHHH
No 262
>PRK09267 flavodoxin FldA; Validated
Probab=25.61 E-value=75 Score=25.11 Aligned_cols=34 Identities=29% Similarity=0.455 Sum_probs=0.0
Q ss_pred CceEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCeEE
Q 028138 8 FKRICVFCGSSSGKKATYQEAAVELGKELVERKLDLV 44 (213)
Q Consensus 8 ~~~I~V~ggs~~~~~~~~~~~A~~lG~~lA~~G~~lv 44 (213)
|++|.|+.+|..++.... |+.+++.|.+....++
T Consensus 1 mmki~IiY~S~tGnT~~v---A~~Ia~~l~~~~~~~~ 34 (169)
T PRK09267 1 MAKIGIFFGSDTGNTEDI---AKMIQKKLGKDVADVV 34 (169)
T ss_pred CCeEEEEEECCCChHHHH---HHHHHHHhCCCceEEE
No 263
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=25.53 E-value=4.2e+02 Score=22.55 Aligned_cols=83 Identities=19% Similarity=0.141 Sum_probs=40.4
Q ss_pred HHhcCeEEEec-CCCCcHHHHHHHHHHHHhCCCCCceEEE-ecCccc--hHHHHHHHHHHHcCCCCccccCcEE----Ec
Q 028138 102 ARQADAFIALP-GGYGTLEELLEVITWAQLGIHRKPVGLL-NVDGFY--NSLLSFVDKAVDEGFISPTARRIII----SA 173 (213)
Q Consensus 102 ~~~sDa~Ivlp-GG~GTL~Ei~~~~~~~~lg~~~kPiill-~~~g~~--~~l~~~l~~~~~~g~i~~~~~~~i~----~~ 173 (213)
++.+|+++++- ..-+...+ ..++ .++...++|++++ |--... +.+.+.++.+....-. ...+. .-
T Consensus 77 l~~aDvvl~VvD~~~~~~~~-~~i~--~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~----~~v~~iSA~~g 149 (270)
T TIGR00436 77 IGGVDLILFVVDSDQWNGDG-EFVL--TKLQNLKRPVVLTRNKLDNKFKDKLLPLIDKYAILEDF----KDIVPISALTG 149 (270)
T ss_pred HhhCCEEEEEEECCCCCchH-HHHH--HHHHhcCCCEEEEEECeeCCCHHHHHHHHHHHHhhcCC----CceEEEecCCC
Confidence 46789766653 33333332 1122 2333356887766 432222 2233333333222111 12222 23
Q ss_pred CCHHHHHHHHHhhcCCCc
Q 028138 174 PTAKKLVRQLEEYVPEHD 191 (213)
Q Consensus 174 ~~~ee~~~~l~~~~~~~~ 191 (213)
+..+++.+.|.+..++..
T Consensus 150 ~gi~~L~~~l~~~l~~~~ 167 (270)
T TIGR00436 150 DNTSFLAAFIEVHLPEGP 167 (270)
T ss_pred CCHHHHHHHHHHhCCCCC
Confidence 678999999998776643
No 264
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=25.50 E-value=67 Score=29.69 Aligned_cols=27 Identities=30% Similarity=0.555 Sum_probs=16.5
Q ss_pred eEEEcCCCcChhHHHHHHHHhcCCeEEEE
Q 028138 42 DLVYGGGSVGLMGLVSQAVHDGGRHVLGV 70 (213)
Q Consensus 42 ~lv~GGg~~GlM~a~~~ga~~~gG~viGv 70 (213)
.||.|||+.|++-|++ |.++|-+|+=|
T Consensus 2 VVVvGgG~aG~~AAi~--AAr~G~~VlLi 28 (428)
T PF12831_consen 2 VVVVGGGPAGVAAAIA--AARAGAKVLLI 28 (428)
T ss_dssp EEEE--SHHHHHHHHH--HHHTTS-EEEE
T ss_pred EEEECccHHHHHHHHH--HHHCCCEEEEE
Confidence 4788999988886553 44567777666
No 265
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=25.37 E-value=1.5e+02 Score=26.64 Aligned_cols=53 Identities=28% Similarity=0.444 Sum_probs=32.7
Q ss_pred HhcCeEEEecCCCCcHHHHHHHHHHHHhCCCCCceEEEecC--ccc-----hHHHHHHHHHHHcCC
Q 028138 103 RQADAFIALPGGYGTLEELLEVITWAQLGIHRKPVGLLNVD--GFY-----NSLLSFVDKAVDEGF 161 (213)
Q Consensus 103 ~~sDa~IvlpGG~GTL~Ei~~~~~~~~lg~~~kPiill~~~--g~~-----~~l~~~l~~~~~~g~ 161 (213)
+.+|.+|++ ||=||+-..+... ..+++||+-+|.+ ||. +.+.+.++++.+..|
T Consensus 71 ~~~D~vi~l-GGDGT~L~aar~~-----~~~~~PilGIN~G~lGFL~~~~~~~~~~~l~~i~~g~y 130 (306)
T PRK03372 71 DGCELVLVL-GGDGTILRAAELA-----RAADVPVLGVNLGHVGFLAEAEAEDLDEAVERVVDRDY 130 (306)
T ss_pred cCCCEEEEE-cCCHHHHHHHHHh-----ccCCCcEEEEecCCCceeccCCHHHHHHHHHHHHcCCc
Confidence 456766655 7889977655432 2357899888864 453 344555666655544
No 266
>PRK07775 short chain dehydrogenase; Provisional
Probab=25.27 E-value=4.1e+02 Score=22.28 Aligned_cols=34 Identities=18% Similarity=0.139 Sum_probs=23.6
Q ss_pred cCCceEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEcC
Q 028138 6 SRFKRICVFCGSSSGKKATYQEAAVELGKELVERKLDLVYGG 47 (213)
Q Consensus 6 ~~~~~I~V~ggs~~~~~~~~~~~A~~lG~~lA~~G~~lv~GG 47 (213)
...+.|.|.|+++. ..+.+.+.|+++|+.|+.-.
T Consensus 8 ~~~~~vlVtGa~g~--------iG~~la~~L~~~G~~V~~~~ 41 (274)
T PRK07775 8 PDRRPALVAGASSG--------IGAATAIELAAAGFPVALGA 41 (274)
T ss_pred CCCCEEEEECCCch--------HHHHHHHHHHHCCCEEEEEe
Confidence 34467888876642 35678888888999876443
No 267
>PLN02522 ATP citrate (pro-S)-lyase
Probab=25.27 E-value=6.8e+02 Score=24.84 Aligned_cols=108 Identities=18% Similarity=0.051 Sum_probs=56.7
Q ss_pred CCHHHHHHHHHH--hcCeEEEecC-CCCcHHHHHHHHHHHHhCCCCCceEEEecCccchH---HHHHHHHHHHcCCCCcc
Q 028138 92 SDMHQRKAEMAR--QADAFIALPG-GYGTLEELLEVITWAQLGIHRKPVGLLNVDGFYNS---LLSFVDKAVDEGFISPT 165 (213)
Q Consensus 92 ~~~~~R~~~l~~--~sDa~IvlpG-G~GTL~Ei~~~~~~~~lg~~~kPiill~~~g~~~~---l~~~l~~~~~~g~i~~~ 165 (213)
.+|.+=...|.+ ..++++++.- |..--.++.+++. +.. .+||||.+-. |-..+ -... +-..|-+-..
T Consensus 208 ~~~~D~L~~~~~Dp~Tk~IvlygEiGg~~e~~f~ea~~--~a~-~~KPVVa~ka-Grsa~~~~~~aa---~gHtGAiag~ 280 (608)
T PLN02522 208 STLSDHVLRFNNIPQIKMIVVLGELGGRDEYSLVEALK--QGK-VSKPVVAWVS-GTCARLFKSEVQ---FGHAGAKSGG 280 (608)
T ss_pred CCHHHHHHHHhcCCCCCEEEEEEecCchhHHHHHHHHH--Hhc-CCCCEEEEec-cCCCccCccccc---cccccccccC
Confidence 455544555554 3346655554 4444455555543 222 5799999954 34431 0111 1111222111
Q ss_pred c------------cCcEEEcCCHHHHHHHHHhh--------------cCCCcccccccccccccccc
Q 028138 166 A------------RRIIISAPTAKKLVRQLEEY--------------VPEHDEITSKLVWEDRLNYV 206 (213)
Q Consensus 166 ~------------~~~i~~~~~~ee~~~~l~~~--------------~~~~~~~~~~~~w~~~~~~~ 206 (213)
+ ..-+..++|++|+.+.+++. .++..+.--.+.|+..++-+
T Consensus 281 ~~~ta~~k~aAlr~aGv~vv~s~~El~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (608)
T PLN02522 281 DMESAQAKNKALKDAGAIVPTSFEALEAAIKETFEKLVEEGKIIPVKEVTPPQIPEDLNSAIKSGKV 347 (608)
T ss_pred CCccHHHHHHHHHHCCCeEeCCHHHHHHHHHHHHHHHHhCCceeecCCCCCCCCCcchHHHHhCCce
Confidence 1 12367899999999887761 24444566678888666543
No 268
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=25.17 E-value=1.7e+02 Score=23.86 Aligned_cols=38 Identities=24% Similarity=0.312 Sum_probs=27.1
Q ss_pred HHHhcCeEEEecCCCCcHHHHHHHHHHHHhCCCCCceEEEecC
Q 028138 101 MARQADAFIALPGGYGTLEELLEVITWAQLGIHRKPVGLLNVD 143 (213)
Q Consensus 101 l~~~sDa~IvlpGG~GTL~Ei~~~~~~~~lg~~~kPiill~~~ 143 (213)
+....|++|+.|--...+.++.+-+. ..+.||++++..
T Consensus 52 i~~~~d~Iiv~~~~~~~~~~~l~~~~-----~~gIpvv~~d~~ 89 (257)
T PF13407_consen 52 ISQGVDGIIVSPVDPDSLAPFLEKAK-----AAGIPVVTVDSD 89 (257)
T ss_dssp HHTTESEEEEESSSTTTTHHHHHHHH-----HTTSEEEEESST
T ss_pred HHhcCCEEEecCCCHHHHHHHHHHHh-----hcCceEEEEecc
Confidence 44567999999888777667766553 246799988765
No 269
>TIGR02919 accessory Sec system glycosyltransferase GtfB. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus.
Probab=24.97 E-value=1.7e+02 Score=27.48 Aligned_cols=81 Identities=14% Similarity=0.243 Sum_probs=47.2
Q ss_pred eeecCCHHH-HHHHHHHhcCeEEEecCCCCcHHHHHHHHHHHHhCCCCCceEEEecCccchHHHHHHHHHHHcCCCCccc
Q 028138 88 VKTVSDMHQ-RKAEMARQADAFIALPGGYGTLEELLEVITWAQLGIHRKPVGLLNVDGFYNSLLSFVDKAVDEGFISPTA 166 (213)
Q Consensus 88 ~~~~~~~~~-R~~~l~~~sDa~IvlpGG~GTL~Ei~~~~~~~~lg~~~kPiill~~~g~~~~l~~~l~~~~~~g~i~~~~ 166 (213)
++..+++.. +..-+.+.||+++-.-=|-|-..=+.+|.. |++||+-++.. += + .-++..
T Consensus 330 vvly~~~~~~~l~~ly~~~dlyLdin~~e~~~~al~eA~~------~G~pI~afd~t-~~-~----------~~~i~~-- 389 (438)
T TIGR02919 330 VKLYPNITTQKIQELYQTCDIYLDINHGNEILNAVRRAFE------YNLLILGFEET-AH-N----------RDFIAS-- 389 (438)
T ss_pred cEEECCcChHHHHHHHHhccEEEEccccccHHHHHHHHHH------cCCcEEEEecc-cC-C----------cccccC--
Confidence 344444422 555666777777666544444444444443 78999988753 11 1 112221
Q ss_pred cCcEEEcCCHHHHHHHHHhhcCC
Q 028138 167 RRIIISAPTAKKLVRQLEEYVPE 189 (213)
Q Consensus 167 ~~~i~~~~~~ee~~~~l~~~~~~ 189 (213)
..++-.++++++++.|.+....
T Consensus 390 -g~l~~~~~~~~m~~~i~~lL~d 411 (438)
T TIGR02919 390 -ENIFEHNEVDQLISKLKDLLND 411 (438)
T ss_pred -CceecCCCHHHHHHHHHHHhcC
Confidence 4567788899999988877544
No 270
>PRK07677 short chain dehydrogenase; Provisional
Probab=24.79 E-value=1.2e+02 Score=25.00 Aligned_cols=29 Identities=21% Similarity=0.286 Sum_probs=17.3
Q ss_pred eEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEc
Q 028138 10 RICVFCGSSSGKKATYQEAAVELGKELVERKLDLVYG 46 (213)
Q Consensus 10 ~I~V~ggs~~~~~~~~~~~A~~lG~~lA~~G~~lv~G 46 (213)
++-|.|+++. ..+.+++.++++|+.|+.-
T Consensus 3 ~~lItG~s~g--------iG~~ia~~l~~~G~~Vi~~ 31 (252)
T PRK07677 3 VVIITGGSSG--------MGKAMAKRFAEEGANVVIT 31 (252)
T ss_pred EEEEeCCCCh--------HHHHHHHHHHHCCCEEEEE
Confidence 5666665542 3456666667777776543
No 271
>PRK15494 era GTPase Era; Provisional
Probab=24.77 E-value=4.1e+02 Score=23.80 Aligned_cols=86 Identities=13% Similarity=0.120 Sum_probs=40.1
Q ss_pred HHhcCeEEEecCCCCcHHHHHHHHHHHHhCCCC-CceEEEecCccchHHHHHHHHHHHcCCCCccccCcEEE----cCCH
Q 028138 102 ARQADAFIALPGGYGTLEELLEVITWAQLGIHR-KPVGLLNVDGFYNSLLSFVDKAVDEGFISPTARRIIIS----APTA 176 (213)
Q Consensus 102 ~~~sDa~IvlpGG~GTL~Ei~~~~~~~~lg~~~-kPiill~~~g~~~~l~~~l~~~~~~g~i~~~~~~~i~~----~~~~ 176 (213)
+..+|++|++--..-++++....+ +..+...+ .||+++|--...+.....+.....+.+. ....+.+ -...
T Consensus 129 l~~aDvil~VvD~~~s~~~~~~~i-l~~l~~~~~p~IlViNKiDl~~~~~~~~~~~l~~~~~---~~~i~~iSAktg~gv 204 (339)
T PRK15494 129 LHSADLVLLIIDSLKSFDDITHNI-LDKLRSLNIVPIFLLNKIDIESKYLNDIKAFLTENHP---DSLLFPISALSGKNI 204 (339)
T ss_pred hhhCCEEEEEEECCCCCCHHHHHH-HHHHHhcCCCEEEEEEhhcCccccHHHHHHHHHhcCC---CcEEEEEeccCccCH
Confidence 457898777654443444443211 12222223 4455555433322212222222222110 1122322 3478
Q ss_pred HHHHHHHHhhcCCCc
Q 028138 177 KKLVRQLEEYVPEHD 191 (213)
Q Consensus 177 ee~~~~l~~~~~~~~ 191 (213)
++++++|.+..++..
T Consensus 205 ~eL~~~L~~~l~~~~ 219 (339)
T PRK15494 205 DGLLEYITSKAKISP 219 (339)
T ss_pred HHHHHHHHHhCCCCC
Confidence 999999999777654
No 272
>COG0150 PurM Phosphoribosylaminoimidazole (AIR) synthetase [Nucleotide transport and metabolism]
Probab=24.73 E-value=4.7e+02 Score=24.10 Aligned_cols=92 Identities=27% Similarity=0.206 Sum_probs=49.4
Q ss_pred HHHHHHHHHHH----CCCeEEEcCCCcChhHHH-HHHHHhcCCeEEEEeCCCC-CCCCCCCCCCceeee---cC-----C
Q 028138 28 AAVELGKELVE----RKLDLVYGGGSVGLMGLV-SQAVHDGGRHVLGVIPKTL-TPREITGDPVGEVKT---VS-----D 93 (213)
Q Consensus 28 ~A~~lG~~lA~----~G~~lv~GGg~~GlM~a~-~~ga~~~gG~viGv~P~~~-~~~e~~~~~~~~~~~---~~-----~ 93 (213)
.|.++..-|++ .|+.|| ||=. =-|--. ..+-.+.-|.++|+..... .+.+.. ...++++ .+ +
T Consensus 115 ~~~~iv~GiaeGc~~ag~aLv-GGET-AeMPg~y~~g~yDlaG~~vGvvek~~ii~g~~i--~~GDviigl~SSG~HSNG 190 (345)
T COG0150 115 VAAQIVKGIAEGCKQAGCALV-GGET-AEMPGMYRGGDYDLAGFAVGVVEKDEIIDGSKV--KEGDVIIGLASSGLHSNG 190 (345)
T ss_pred HHHHHHHHHHHHHHHhCCEEe-cccc-ccCCCcccCCceeeeeeEEEEEEcccccccccc--CCCCEEEEecCCCcCCCc
Confidence 45667766665 799988 5543 444222 2333566788999976432 111110 1123332 23 3
Q ss_pred H-HHHHHHHHHhcCeEEEecCCCC-cHHHHHH
Q 028138 94 M-HQRKAEMARQADAFIALPGGYG-TLEELLE 123 (213)
Q Consensus 94 ~-~~R~~~l~~~sDa~IvlpGG~G-TL~Ei~~ 123 (213)
| -.||.+....-+.---+|...| ||-|.+.
T Consensus 191 ySLvRKi~~~~~~~~~~~~~~~~g~~l~e~LL 222 (345)
T COG0150 191 YSLVRKIIEESGLDYDDELPEELGKTLGEELL 222 (345)
T ss_pred hHHHHHHHHhcCccccccCccccccCHHHHhc
Confidence 3 3788765422233345777777 8877654
No 273
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=24.61 E-value=1.4e+02 Score=24.67 Aligned_cols=31 Identities=19% Similarity=0.370 Sum_probs=23.0
Q ss_pred ceEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEcC
Q 028138 9 KRICVFCGSSSGKKATYQEAAVELGKELVERKLDLVYGG 47 (213)
Q Consensus 9 ~~I~V~ggs~~~~~~~~~~~A~~lG~~lA~~G~~lv~GG 47 (213)
|+|+|+||+. ..+..+++.|+++|+.|+...
T Consensus 1 MkI~IIGG~G--------~mG~ala~~L~~~G~~V~v~~ 31 (219)
T TIGR01915 1 MKIAVLGGTG--------DQGKGLALRLAKAGNKIIIGS 31 (219)
T ss_pred CEEEEEcCCC--------HHHHHHHHHHHhCCCEEEEEE
Confidence 4699997543 356788999999999876553
No 274
>cd03132 GATase1_catalase Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Catalase catalyzes the dismutation of hydrogen peroxide (H2O2) to water and oxygen. This group includes the large catalases: Neurospora crassa Catalase-1 and Catalase-3 and, Escherichia coli HP-II. This GATase1-like domain has an essential role in HP-II catalase activity. However, it lacks enzymatic activity and the catalytic triad typical of GATase1 domains. Catalase-1 and -3 are homotetrameric, HP-II is homohexameric. It has been proposed that this domain may facilitate the folding and oligomerization process. The interface between this GATase1-like domain of HP-II and the core of the subunit forms part of a channel which provides access to the deeply buried catalase active sites of HPII. Catalase-1 is associated with non-growing cells; C
Probab=24.47 E-value=2.5e+02 Score=21.23 Aligned_cols=36 Identities=28% Similarity=0.489 Sum_probs=18.7
Q ss_pred CeEEEecCCCCcHHHHH---HHHHHH-HhCCCCCceEEEec
Q 028138 106 DAFIALPGGYGTLEELL---EVITWA-QLGIHRKPVGLLNV 142 (213)
Q Consensus 106 Da~IvlpGG~GTL~Ei~---~~~~~~-~lg~~~kPiill~~ 142 (213)
|+ |++|||.+....+. ....|. +...++|||..+-.
T Consensus 64 D~-liVpGg~~~~~~~~~~~~l~~~l~~~~~~~~~I~aic~ 103 (142)
T cd03132 64 DA-VVVPGGAEAAFALAPSGRALHFVTEAFKHGKPIGAVGE 103 (142)
T ss_pred CE-EEECCCccCHHHHccChHHHHHHHHHHhcCCeEEEcCc
Confidence 55 55678877654211 112222 22346789887644
No 275
>PRK07023 short chain dehydrogenase; Provisional
Probab=24.43 E-value=1.4e+02 Score=24.50 Aligned_cols=30 Identities=17% Similarity=0.151 Sum_probs=0.0
Q ss_pred CceEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCeEEE
Q 028138 8 FKRICVFCGSSSGKKATYQEAAVELGKELVERKLDLVY 45 (213)
Q Consensus 8 ~~~I~V~ggs~~~~~~~~~~~A~~lG~~lA~~G~~lv~ 45 (213)
|++|.|.|+++. ..+.+.+.|+++|+.++.
T Consensus 1 ~~~vlItGasgg--------iG~~ia~~l~~~G~~v~~ 30 (243)
T PRK07023 1 AVRAIVTGHSRG--------LGAALAEQLLQPGIAVLG 30 (243)
T ss_pred CceEEEecCCcc--------hHHHHHHHHHhCCCEEEE
No 276
>PRK12827 short chain dehydrogenase; Provisional
Probab=24.39 E-value=1.6e+02 Score=23.91 Aligned_cols=30 Identities=17% Similarity=0.268 Sum_probs=21.5
Q ss_pred CceEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCeEEE
Q 028138 8 FKRICVFCGSSSGKKATYQEAAVELGKELVERKLDLVY 45 (213)
Q Consensus 8 ~~~I~V~ggs~~~~~~~~~~~A~~lG~~lA~~G~~lv~ 45 (213)
.++|.|.|+++. ..+.+++.|+++|+.++.
T Consensus 6 ~~~ilItGasg~--------iG~~la~~l~~~g~~v~~ 35 (249)
T PRK12827 6 SRRVLITGGSGG--------LGRAIAVRLAADGADVIV 35 (249)
T ss_pred CCEEEEECCCCh--------HHHHHHHHHHHCCCeEEE
Confidence 357888877642 356778888889998764
No 277
>PRK10343 RNA-binding protein YhbY; Provisional
Probab=24.34 E-value=2.3e+02 Score=21.17 Aligned_cols=51 Identities=20% Similarity=0.261 Sum_probs=31.9
Q ss_pred CCCceEEEecCccchHHHHHHHH-HHHcCCCCccccCcEEEcCCHHHHHHHHHh
Q 028138 133 HRKPVGLLNVDGFYNSLLSFVDK-AVDEGFISPTARRIIISAPTAKKLVRQLEE 185 (213)
Q Consensus 133 ~~kPiill~~~g~~~~l~~~l~~-~~~~g~i~~~~~~~i~~~~~~ee~~~~l~~ 185 (213)
+-+|++.++.+|.-+.+++.++. +.+...|.=.... ..-++..|+.+.|++
T Consensus 17 ~l~Pvv~IGk~Glt~~vi~ei~~aL~~hELIKvkv~~--~~~~~~~e~~~~i~~ 68 (97)
T PRK10343 17 PLKPVVLLGSNGLTEGVLAEIEQALEHHELIKVKIAT--EDRETKTLIVEAIVR 68 (97)
T ss_pred CCCCeEEECCCCCCHHHHHHHHHHHHHCCcEEEEecC--CChhHHHHHHHHHHH
Confidence 44999999999999999998876 4444444322111 112344566666665
No 278
>PRK13146 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=24.06 E-value=2e+02 Score=23.88 Aligned_cols=18 Identities=39% Similarity=0.481 Sum_probs=9.8
Q ss_pred hHHHHHHHHhcCCeEEEE
Q 028138 53 MGLVSQAVHDGGRHVLGV 70 (213)
Q Consensus 53 M~a~~~ga~~~gG~viGv 70 (213)
.+++.+-+.+.+..++||
T Consensus 66 ~~~~~~~~~~~~~PvlGi 83 (209)
T PRK13146 66 GEAVIEAVLAAGRPFLGI 83 (209)
T ss_pred HHHHHHHHHhCCCcEEEE
Confidence 334444444556666666
No 279
>cd07381 MPP_CapA CapA and related proteins, metallophosphatase domain. CapA is one of three membrane-associated enzymes in Bacillus anthracis that is required for synthesis of gamma-polyglutamic acid (PGA), a major component of the bacterial capsule. The YwtB and PgsA proteins of Bacillus subtilis are closely related to CapA and are also included in this alignment model. CapA belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal
Probab=23.99 E-value=82 Score=26.41 Aligned_cols=20 Identities=35% Similarity=0.522 Sum_probs=14.8
Q ss_pred HHHHHHHHHCCCeEEEcCCC
Q 028138 30 VELGKELVERKLDLVYGGGS 49 (213)
Q Consensus 30 ~~lG~~lA~~G~~lv~GGg~ 49 (213)
+++++.+...|.++|.|+.+
T Consensus 197 ~~la~~l~~~G~D~IiG~H~ 216 (239)
T cd07381 197 RELARALIDAGADLVIGHHP 216 (239)
T ss_pred HHHHHHHHHCCCCEEEcCCC
Confidence 56777777778888887776
No 280
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=23.97 E-value=1.7e+02 Score=24.31 Aligned_cols=36 Identities=14% Similarity=0.018 Sum_probs=0.0
Q ss_pred CcccccCCceEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCeEE
Q 028138 1 MEDAKSRFKRICVFCGSSSGKKATYQEAAVELGKELVERKLDLV 44 (213)
Q Consensus 1 ~~~~~~~~~~I~V~ggs~~~~~~~~~~~A~~lG~~lA~~G~~lv 44 (213)
|.+.+-.-+++-|.|+++ -..+.+++.|+++|+.|+
T Consensus 1 ~~~~~l~~k~~lItGas~--------gIG~aia~~l~~~G~~vv 36 (251)
T PRK12481 1 MQLFDLNGKVAIITGCNT--------GLGQGMAIGLAKAGADIV 36 (251)
T ss_pred CCCcccCCCEEEEeCCCc--------hHHHHHHHHHHHCCCEEE
No 281
>cd04261 AAK_AKii-LysC-BS AAK_AKii-LysC-BS: Amino Acid Kinase Superfamily (AAK), AKii; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive aspartokinase isoenzymes. The B. subtilis 168 AKII is induced by methionine, and repressed and inhibited by lysine. Although Corynebacterium glutamicum is known to contain a single aspartokinase isoenzyme type, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In this organism and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regulated by the concerted action of lysine and
Probab=23.97 E-value=2.1e+02 Score=24.13 Aligned_cols=34 Identities=18% Similarity=0.210 Sum_probs=19.9
Q ss_pred EcCCCCCCCHHHHHHHHHHHHHHHHCC--CeEEEcCC
Q 028138 14 FCGSSSGKKATYQEAAVELGKELVERK--LDLVYGGG 48 (213)
Q Consensus 14 ~ggs~~~~~~~~~~~A~~lG~~lA~~G--~~lv~GGg 48 (213)
||||...+.+...+.++++.... +.| ..||.||+
T Consensus 6 ~GGs~l~~~~~~~~~~~~i~~l~-~~g~~~vvV~sg~ 41 (239)
T cd04261 6 FGGTSVASIERIKRVAERIKKRK-KKGNQVVVVVSAM 41 (239)
T ss_pred ECCcccCCHHHHHHHHHHHHHHH-HcCCCEEEEECCC
Confidence 77877653344555566665543 344 45677775
No 282
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=23.90 E-value=4.1e+02 Score=23.11 Aligned_cols=68 Identities=22% Similarity=0.297 Sum_probs=39.6
Q ss_pred HHHHHhcCeEEEec--CCCCcHHHHHHHHHHHHhCCCCCceEEEecCccchHHHHHHHHHHHcCCCCccccCcEEEcCCH
Q 028138 99 AEMARQADAFIALP--GGYGTLEELLEVITWAQLGIHRKPVGLLNVDGFYNSLLSFVDKAVDEGFISPTARRIIISAPTA 176 (213)
Q Consensus 99 ~~l~~~sDa~Ivlp--GG~GTL~Ei~~~~~~~~lg~~~kPiill~~~g~~~~l~~~l~~~~~~g~i~~~~~~~i~~~~~~ 176 (213)
..+...||+++..+ -|+|.. +.|++. .++|||..+..|. ..+ +.++ . .-+.+..|+
T Consensus 294 ~~~l~~ad~~l~~s~~E~~g~~--~lEAma------~G~PvI~s~~~~~-~e~-------i~~~-----~-~g~~~~~~~ 351 (392)
T cd03805 294 ELLLSSARALLYTPSNEHFGIV--PLEAMY------AGKPVIACNSGGP-LET-------VVDG-----E-TGFLCEPTP 351 (392)
T ss_pred HHHHhhCeEEEECCCcCCCCch--HHHHHH------cCCCEEEECCCCc-HHH-------hccC-----C-ceEEeCCCH
Confidence 44668899988643 234442 356664 5799999876542 221 1111 1 123345688
Q ss_pred HHHHHHHHhhcC
Q 028138 177 KKLVRQLEEYVP 188 (213)
Q Consensus 177 ee~~~~l~~~~~ 188 (213)
+++.+.|.+...
T Consensus 352 ~~~a~~i~~l~~ 363 (392)
T cd03805 352 EEFAEAMLKLAN 363 (392)
T ss_pred HHHHHHHHHHHh
Confidence 888888876543
No 283
>COG1597 LCB5 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]
Probab=23.78 E-value=1e+02 Score=27.40 Aligned_cols=31 Identities=26% Similarity=0.455 Sum_probs=21.9
Q ss_pred cCeEEEecCCCCcHHHHHHHHHHHHhCCCCCc-eEEE
Q 028138 105 ADAFIALPGGYGTLEELLEVITWAQLGIHRKP-VGLL 140 (213)
Q Consensus 105 sDa~IvlpGG~GTL~Ei~~~~~~~~lg~~~kP-iill 140 (213)
.--.|+..||=||++|+...+. .++.| +.++
T Consensus 58 ~~D~via~GGDGTv~evingl~-----~~~~~~Lgil 89 (301)
T COG1597 58 GYDTVIAAGGDGTVNEVANGLA-----GTDDPPLGIL 89 (301)
T ss_pred CCCEEEEecCcchHHHHHHHHh-----cCCCCceEEe
Confidence 3346777899999999998774 24455 6665
No 284
>PRK07102 short chain dehydrogenase; Provisional
Probab=23.63 E-value=1.4e+02 Score=24.40 Aligned_cols=30 Identities=17% Similarity=0.205 Sum_probs=19.2
Q ss_pred CceEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCeEEE
Q 028138 8 FKRICVFCGSSSGKKATYQEAAVELGKELVERKLDLVY 45 (213)
Q Consensus 8 ~~~I~V~ggs~~~~~~~~~~~A~~lG~~lA~~G~~lv~ 45 (213)
|++|.|.|+++. ....+.+.|+++|+.|+-
T Consensus 1 ~~~vlItGas~g--------iG~~~a~~l~~~G~~Vi~ 30 (243)
T PRK07102 1 MKKILIIGATSD--------IARACARRYAAAGARLYL 30 (243)
T ss_pred CcEEEEEcCCcH--------HHHHHHHHHHhcCCEEEE
Confidence 356778876642 345666677778887653
No 285
>cd06059 Tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino-termi
Probab=23.62 E-value=4.9e+02 Score=23.68 Aligned_cols=53 Identities=19% Similarity=0.355 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHH-----CCCeEEE--cCCC-cChhHHHHHHHHhcC----CeEEEEeCCCC
Q 028138 23 ATYQEAAVELGKELVE-----RKLDLVY--GGGS-VGLMGLVSQAVHDGG----RHVLGVIPKTL 75 (213)
Q Consensus 23 ~~~~~~A~~lG~~lA~-----~G~~lv~--GGg~-~GlM~a~~~ga~~~g----G~viGv~P~~~ 75 (213)
+.+.+...+.-|..++ .|+.++. |||. .|+--.+.+-+.+.- -.+++|.|...
T Consensus 69 ~~~~e~~~d~ir~~~E~cD~l~gf~i~~sl~GGTGSG~gs~l~e~l~d~y~~~~i~~~~v~P~~~ 133 (382)
T cd06059 69 PELIDEILDRIRKQVEKCDSLQGFQITHSLGGGTGSGLGSLLLELLSDEYPKILINTFSIFPSPQ 133 (382)
T ss_pred HHHHHHHHHHHHHHHHhCCCcCceEEEEecCCCcchhHHHHHHHHHHHhcCccceEeEEEeccCc
Confidence 4555555555566666 3667764 4432 366666666666542 24566777643
No 286
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=23.57 E-value=98 Score=25.33 Aligned_cols=71 Identities=14% Similarity=0.134 Sum_probs=27.2
Q ss_pred HHhcCeEEEecC------CCCcHHHHHHHHHHHHhC--CCCCceEEEecC---ccchHHHHHHHHHHHcCCCCccccCcE
Q 028138 102 ARQADAFIALPG------GYGTLEELLEVITWAQLG--IHRKPVGLLNVD---GFYNSLLSFVDKAVDEGFISPTARRII 170 (213)
Q Consensus 102 ~~~sDa~IvlpG------G~GTL~Ei~~~~~~~~lg--~~~kPiill~~~---g~~~~l~~~l~~~~~~g~i~~~~~~~i 170 (213)
+..||++++..+ |.=-+.-+..+.. +++ ..+..++++... |.-+.+.. .+.++..-. . ..+
T Consensus 74 i~~adv~~I~VpTP~~~~~~~Dls~v~~a~~--~i~~~l~~~~lvV~~STvppGtt~~~~~---~ile~~~~~--~-~~f 145 (185)
T PF03721_consen 74 IKDADVVFICVPTPSDEDGSPDLSYVESAIE--SIAPVLRPGDLVVIESTVPPGTTEELLK---PILEKRSGK--K-EDF 145 (185)
T ss_dssp HHH-SEEEE----EBETTTSBETHHHHHHHH--HHHHHHCSCEEEEESSSSSTTHHHHHHH---HHHHHHCCT--T-TCE
T ss_pred hhccceEEEecCCCccccCCccHHHHHHHHH--HHHHHHhhcceEEEccEEEEeeehHhhh---hhhhhhccc--c-cCC
Confidence 578998766553 2222444444443 222 223456666543 44443322 222211110 1 557
Q ss_pred EEcCCHHHHH
Q 028138 171 ISAPTAKKLV 180 (213)
Q Consensus 171 ~~~~~~ee~~ 180 (213)
.++.+||-+.
T Consensus 146 ~la~~PErl~ 155 (185)
T PF03721_consen 146 HLAYSPERLR 155 (185)
T ss_dssp EEEE------
T ss_pred eEEECCCccC
Confidence 7888888654
No 287
>PF01182 Glucosamine_iso: Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase; InterPro: IPR006148 This domain is characteristic of the enzymes 6-phosphogluconolactonase (3.1.1.31 from EC), Glucosamine-6-phosphate isomerase (3.5.99.6 from EC), and Galactosamine-6-phosphate isomerase. 6-Phosphogluconolactonase is the enzyme responsible for the hydrolysis of 6-phosphogluconolactone to 6-phosphogluconate, the second step in the pentose phosphate pathway. Glucosamine-6-phosphate isomerase (or Glucosamine 6-phosphate deaminase) is the enzyme responsible for the conversion of D-glucosamine 6-phosphate into D-fructose 6-phosphate []. It is the last specific step in the pathway for N-acetylglucosamine (GlcNAC) utilization in bacteria such as Escherichia coli (gene nagB) or in fungi such as Candida albicans (gene NAG1).; GO: 0005975 carbohydrate metabolic process; PDB: 3CSS_A 3CH7_A 1Y89_B 3TX2_A 2BKX_B 2BKV_B 3E15_B 1HOR_B 1JT9_A 1HOT_A ....
Probab=23.52 E-value=3e+02 Score=22.56 Aligned_cols=85 Identities=25% Similarity=0.255 Sum_probs=44.0
Q ss_pred HHHhcCeEEEecCCCCcHHHHHHHHHHHH-hCCCCCceEEEecCccc----h--HHHHHHHH-HHHcCCCCccccCcEE-
Q 028138 101 MARQADAFIALPGGYGTLEELLEVITWAQ-LGIHRKPVGLLNVDGFY----N--SLLSFVDK-AVDEGFISPTARRIII- 171 (213)
Q Consensus 101 l~~~sDa~IvlpGG~GTL~Ei~~~~~~~~-lg~~~kPiill~~~g~~----~--~l~~~l~~-~~~~g~i~~~~~~~i~- 171 (213)
+.+...+.|+|+||. |...+++.|.-.. ....-+.|.+++.+.+| + .-..++++ +.+.--|++.....+.
T Consensus 17 i~~~~~~~i~LsgGs-tp~~~y~~L~~~~~~~i~w~~v~~~~~DEr~v~~~~~~Sn~~~~~~~l~~~~~i~~~~i~~~~~ 95 (199)
T PF01182_consen 17 IAERGRAVIALSGGS-TPKPLYQELAKLHKERIDWSRVHFFNVDERVVPPDDPDSNYRMLREHLLDPLPIPPENIHPIDG 95 (199)
T ss_dssp HHHCSSEEEEE--SC-THHHHHHHHHHHHHTCSCGGGEEEEESEEESSTTTSTTSHHHHHHHHTGGGSGGGGGGEETSST
T ss_pred HHHCCCEEEEEcCCH-HHHHHHHHHhhhccccCChhHeEEEeCcccccCCCCCccHHHHHHHHhhccCCCCcceEEeCCC
Confidence 346678999999995 5557777766432 12222668888887777 1 12233332 3322222222111122
Q ss_pred EcCCHHHHHHHHHhh
Q 028138 172 SAPTAKKLVRQLEEY 186 (213)
Q Consensus 172 ~~~~~ee~~~~l~~~ 186 (213)
-.+|+++..+.+.+.
T Consensus 96 ~~~~~~~~~~~y~~~ 110 (199)
T PF01182_consen 96 EADDPEEAAERYEQE 110 (199)
T ss_dssp TTSSHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH
Confidence 245777777776553
No 288
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=23.50 E-value=3.7e+02 Score=21.10 Aligned_cols=40 Identities=13% Similarity=0.020 Sum_probs=34.2
Q ss_pred HHHHHHHHHCCCeEEEcCCCcChhHHHHHHHHhcCCeEEEE
Q 028138 30 VELGKELVERKLDLVYGGGSVGLMGLVSQAVHDGGRHVLGV 70 (213)
Q Consensus 30 ~~lG~~lA~~G~~lv~GGg~~GlM~a~~~ga~~~gG~viGv 70 (213)
.-+...|-.+||.+++-|-. =-.+.+.+.|.+.+-..||+
T Consensus 19 ~iv~~~l~~~GfeVi~LG~~-v~~e~~v~aa~~~~adiVgl 58 (134)
T TIGR01501 19 KILDHAFTNAGFNVVNLGVL-SPQEEFIKAAIETKADAILV 58 (134)
T ss_pred HHHHHHHHHCCCEEEECCCC-CCHHHHHHHHHHcCCCEEEE
Confidence 45667778899999998864 67799999999999999999
No 289
>COG0112 GlyA Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism]
Probab=23.45 E-value=76 Score=29.77 Aligned_cols=40 Identities=30% Similarity=0.397 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHCCCeEEEcCCC----------cChhHHHHHHHHhcCCeE
Q 028138 28 AAVELGKELVERKLDLVYGGGS----------VGLMGLVSQAVHDGGRHV 67 (213)
Q Consensus 28 ~A~~lG~~lA~~G~~lv~GGg~----------~GlM~a~~~ga~~~gG~v 67 (213)
-|+.|+..|.++|+.||+||=. .|+-+..+..+++.-+.+
T Consensus 292 NAkaLAe~l~~~G~~vvsGgTdnHl~lVDl~~~~~~Gk~ae~~L~~~~It 341 (413)
T COG0112 292 NAKALAEALKERGFKVVSGGTDNHLVLVDLRSKGLTGKKAEAALERAGIT 341 (413)
T ss_pred HHHHHHHHHHHcCCeEecCCccceEEEEEcccCCCCHHHHHHHHHHcCEe
Confidence 3566777788899999997632 255677777777655443
No 290
>PRK08159 enoyl-(acyl carrier protein) reductase; Provisional
Probab=23.42 E-value=1.6e+02 Score=25.06 Aligned_cols=38 Identities=18% Similarity=0.146 Sum_probs=0.0
Q ss_pred CcccccCC--ceEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCeEE
Q 028138 1 MEDAKSRF--KRICVFCGSSSGKKATYQEAAVELGKELVERKLDLV 44 (213)
Q Consensus 1 ~~~~~~~~--~~I~V~ggs~~~~~~~~~~~A~~lG~~lA~~G~~lv 44 (213)
|..+..++ +++-|.|+|+.. -..+++++.|+++|+.|+
T Consensus 1 ~~~~~~~~~~k~~lItGas~~~------GIG~aia~~la~~G~~V~ 40 (272)
T PRK08159 1 MAQASGLMAGKRGLILGVANNR------SIAWGIAKACRAAGAELA 40 (272)
T ss_pred CCcccccccCCEEEEECCCCCC------cHHHHHHHHHHHCCCEEE
No 291
>PRK05583 ribosomal protein L7Ae family protein; Provisional
Probab=23.40 E-value=2e+02 Score=21.48 Aligned_cols=44 Identities=16% Similarity=0.046 Sum_probs=26.0
Q ss_pred HhcCeEEEecCCCCcHHHHHHHHHHHHhCCCCCceEEEecCccchHHHHHHH
Q 028138 103 RQADAFIALPGGYGTLEELLEVITWAQLGIHRKPVGLLNVDGFYNSLLSFVD 154 (213)
Q Consensus 103 ~~sDa~IvlpGG~GTL~Ei~~~~~~~~lg~~~kPiill~~~g~~~~l~~~l~ 154 (213)
+..+.-++.. ||-+|+..++ |+..+-++.+...||.+.+++.++
T Consensus 56 ~~~~vp~~~~---~t~~eLg~a~-----Gk~~~~~iai~d~g~a~~l~~~~~ 99 (104)
T PRK05583 56 NKYNIPYIEG---YSKEELGNAI-----GRDEIKILGVKDKNMAKKLLKLWN 99 (104)
T ss_pred HHcCCCEEEe---cCHHHHHHHh-----CCCCeEEEEEeChHHHHHHHHHHH
Confidence 3445555444 6889998776 322222333444578888887655
No 292
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=23.36 E-value=1.5e+02 Score=24.72 Aligned_cols=31 Identities=10% Similarity=0.184 Sum_probs=20.3
Q ss_pred CCceEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCeEEE
Q 028138 7 RFKRICVFCGSSSGKKATYQEAAVELGKELVERKLDLVY 45 (213)
Q Consensus 7 ~~~~I~V~ggs~~~~~~~~~~~A~~lG~~lA~~G~~lv~ 45 (213)
++++|.|+|+|+ ...+.+.+.|.++|+.|+.
T Consensus 16 ~~~~ilItGasG--------~iG~~l~~~L~~~g~~V~~ 46 (251)
T PLN00141 16 KTKTVFVAGATG--------RTGKRIVEQLLAKGFAVKA 46 (251)
T ss_pred cCCeEEEECCCc--------HHHHHHHHHHHhCCCEEEE
Confidence 356788887664 2355666667777887653
No 293
>PRK07308 flavodoxin; Validated
Probab=23.33 E-value=1.8e+02 Score=22.27 Aligned_cols=18 Identities=6% Similarity=-0.186 Sum_probs=8.0
Q ss_pred hhHHHHHHHHhcCCeEEE
Q 028138 52 LMGLVSQAVHDGGRHVLG 69 (213)
Q Consensus 52 lM~a~~~ga~~~gG~viG 69 (213)
.++.+.+-..+.|..+++
T Consensus 101 a~~~~~~~l~~~g~~~~~ 118 (146)
T PRK07308 101 SVDDFEAQFALTGATKGA 118 (146)
T ss_pred HHHHHHHHHHHcCCeEcc
Confidence 334443333445665443
No 294
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=23.31 E-value=2.3e+02 Score=25.25 Aligned_cols=31 Identities=23% Similarity=0.094 Sum_probs=19.6
Q ss_pred CCeEEEcCCCcChhHHHHHHHHhcCCeEEEEeC
Q 028138 40 KLDLVYGGGSVGLMGLVSQAVHDGGRHVLGVIP 72 (213)
Q Consensus 40 G~~lv~GGg~~GlM~a~~~ga~~~gG~viGv~P 72 (213)
...+|.|+|..|++ +..-|+..|.+++.+..
T Consensus 185 ~~VlV~G~G~vG~~--avq~Ak~~Ga~vi~~~~ 215 (360)
T PLN02586 185 KHLGVAGLGGLGHV--AVKIGKAFGLKVTVISS 215 (360)
T ss_pred CEEEEECCCHHHHH--HHHHHHHCCCEEEEEeC
Confidence 34566666554544 55667777888877643
No 295
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=23.30 E-value=4.2e+02 Score=21.70 Aligned_cols=65 Identities=11% Similarity=0.115 Sum_probs=0.0
Q ss_pred CcccccCCceEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEcCCCcChhHHHHHHHHhcCCeEEEEeCC
Q 028138 1 MEDAKSRFKRICVFCGSSSGKKATYQEAAVELGKELVERKLDLVYGGGSVGLMGLVSQAVHDGGRHVLGVIPK 73 (213)
Q Consensus 1 ~~~~~~~~~~I~V~ggs~~~~~~~~~~~A~~lG~~lA~~G~~lv~GGg~~GlM~a~~~ga~~~gG~viGv~P~ 73 (213)
|.+.+-..++|.|.|+++ ...+.+.+.|+++|+.|+.-+-..---.+..+-..+.|.++..+..+
T Consensus 3 ~~~~~~~~k~vlItGa~g--------~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~~D 67 (255)
T PRK07523 3 LNLFDLTGRRALVTGSSQ--------GIGYALAEGLAQAGAEVILNGRDPAKLAAAAESLKGQGLSAHALAFD 67 (255)
T ss_pred ccccCCCCCEEEEECCcc--------hHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCceEEEEEcc
No 296
>PRK05854 short chain dehydrogenase; Provisional
Probab=23.28 E-value=1.3e+02 Score=26.32 Aligned_cols=19 Identities=11% Similarity=0.230 Sum_probs=13.3
Q ss_pred HHHHHHHHHHCCCeEEEcC
Q 028138 29 AVELGKELVERKLDLVYGG 47 (213)
Q Consensus 29 A~~lG~~lA~~G~~lv~GG 47 (213)
.+++++.|+++|+.|+..+
T Consensus 27 G~~~a~~La~~G~~Vil~~ 45 (313)
T PRK05854 27 GLGLARRLAAAGAEVILPV 45 (313)
T ss_pred HHHHHHHHHHCCCEEEEEe
Confidence 4566777788888877544
No 297
>cd06320 PBP1_allose_binding Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. The members of this group are belonging to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Like other periplasmic receptors of the ABC-type transport systems, the allose-binding protein consists of two alpha/beta domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding.
Probab=23.27 E-value=1.3e+02 Score=24.87 Aligned_cols=33 Identities=6% Similarity=-0.029 Sum_probs=20.8
Q ss_pred EEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCeEEE
Q 028138 11 ICVFCGSSSGKKATYQEAAVELGKELVERKLDLVY 45 (213)
Q Consensus 11 I~V~ggs~~~~~~~~~~~A~~lG~~lA~~G~~lv~ 45 (213)
|+|+..+- .++-+.+....+-+.+.+.|+.++.
T Consensus 2 igvi~~~~--~~~~~~~~~~gi~~~~~~~g~~~~~ 34 (275)
T cd06320 2 YGVVLKTL--SNEFWRSLKEGYENEAKKLGVSVDI 34 (275)
T ss_pred eeEEEecC--CCHHHHHHHHHHHHHHHHhCCeEEE
Confidence 66665432 2566666666677777777777654
No 298
>PF01116 F_bP_aldolase: Fructose-bisphosphate aldolase class-II; InterPro: IPR000771 Fructose-bisphosphate aldolase [, ] is a glycolytic enzyme that catalyses the reversible aldol cleavage or condensation of fructose-1,6-bisphosphate into dihydroxyacetone-phosphate and glyceraldehyde 3-phosphate. There are two classes of fructose-bisphosphate aldolases with different catalytic mechanisms. Class-II aldolases [], mainly found in prokaryotes and fungi, are homodimeric enzymes, which require a divalent metal ion, generally zinc, for their activity. This family also includes the Escherichia coli galactitol operon protein, gatY, which catalyses the transformation of tagatose 1,6-bisphosphate into glycerone phosphate and D-glyceraldehyde 3-phosphate; and E. coli N-acetyl galactosamine operon protein, agaY, which catalyses the same reaction. There are two histidine residues in the first half of the sequence of these enzymes that have been shown to be involved in binding a zinc ion [].; GO: 0008270 zinc ion binding, 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3Q94_A 1RVG_B 1RV8_C 3C4U_A 3C56_B 3C52_A 2FJK_A 3N9R_P 3N9S_A 1GVF_B ....
Probab=23.26 E-value=1.1e+02 Score=27.26 Aligned_cols=97 Identities=18% Similarity=0.145 Sum_probs=53.8
Q ss_pred CHHHHHHHHHHHHHHHHCCCeE-----EEcCCCcChh------------HHHHHHHHhcCCeEEEEeCCCCCCCCCCCCC
Q 028138 22 KATYQEAAVELGKELVERKLDL-----VYGGGSVGLM------------GLVSQAVHDGGRHVLGVIPKTLTPREITGDP 84 (213)
Q Consensus 22 ~~~~~~~A~~lG~~lA~~G~~l-----v~GGg~~GlM------------~a~~~ga~~~gG~viGv~P~~~~~~e~~~~~ 84 (213)
.++-.+..+++.+.....|..| ..||...|+. +.+.+=+.+-|-..+.|.-+.. |-.
T Consensus 109 ~eeNi~~T~~vv~~ah~~gv~VEaElG~i~g~ed~~~~~~~~~~~~TdP~~a~~Fv~~TgvD~LAvaiGt~------HG~ 182 (287)
T PF01116_consen 109 FEENIAITREVVEYAHAYGVSVEAELGHIGGKEDGIESEEETESLYTDPEEAKEFVEETGVDALAVAIGTA------HGM 182 (287)
T ss_dssp HHHHHHHHHHHHHHHHHTT-EEEEEESBSSSSCTTCSSSTT-TTCSSSHHHHHHHHHHHTTSEEEE-SSSB------SSS
T ss_pred HHHHHHHHHHHHHhhhhhCCEEEEEeeeeeccCCCccccccccccccCHHHHHHHHHHhCCCEEEEecCcc------ccc
Confidence 4444466777777777777766 1243322322 3333434455666666632211 111
Q ss_pred CceeeecCCH-HHHHHHHHHhc-CeEEEecCCCCcHHHHHHHH
Q 028138 85 VGEVKTVSDM-HQRKAEMARQA-DAFIALPGGYGTLEELLEVI 125 (213)
Q Consensus 85 ~~~~~~~~~~-~~R~~~l~~~s-Da~IvlpGG~GTL~Ei~~~~ 125 (213)
|... ..+.+ .+|...+.+.. +.-+||.||.|+-+|-+...
T Consensus 183 y~~~-~~p~Ld~~~L~~I~~~~~~iPLVlHGgSG~~~e~~~~a 224 (287)
T PF01116_consen 183 YKGG-KKPKLDFDRLKEIREAVPDIPLVLHGGSGLPDEQIRKA 224 (287)
T ss_dssp BSSS-SSTC--HHHHHHHHHHHHTSEEEESSCTTS-HHHHHHH
T ss_pred cCCC-CCcccCHHHHHHHHHhcCCCCEEEECCCCCCHHHHHHH
Confidence 1110 12233 57888888888 99999999999999877554
No 299
>PRK11780 isoprenoid biosynthesis protein with amidotransferase-like domain; Provisional
Probab=23.24 E-value=87 Score=26.49 Aligned_cols=37 Identities=22% Similarity=0.058 Sum_probs=19.8
Q ss_pred ceEEEEcCCCCCC-CHHHHHHHHHHHHHHHHCCCeEEEc
Q 028138 9 KRICVFCGSSSGK-KATYQEAAVELGKELVERKLDLVYG 46 (213)
Q Consensus 9 ~~I~V~ggs~~~~-~~~~~~~A~~lG~~lA~~G~~lv~G 46 (213)
++|+|+.+|...- .-+..|. ..-=..|-+.|+.+..=
T Consensus 2 kkVlills~~~~~dG~e~~E~-~~P~~~L~~aG~~V~~a 39 (217)
T PRK11780 2 KKIAVILSGCGVYDGSEIHEA-VLTLLALDRAGAEAVCF 39 (217)
T ss_pred CEEEEEEccCCCCCCEehhHH-HHHHHHHHHCCCEEEEE
Confidence 5688886532211 1122222 23456677789988653
No 300
>PRK07152 nadD putative nicotinate-nucleotide adenylyltransferase; Validated
Probab=23.23 E-value=1.1e+02 Score=27.48 Aligned_cols=29 Identities=24% Similarity=0.171 Sum_probs=21.7
Q ss_pred ceEEEEcCCCCCCCHHHHHHHHHHHHHHH
Q 028138 9 KRICVFCGSSSGKKATYQEAAVELGKELV 37 (213)
Q Consensus 9 ~~I~V~ggs~~~~~~~~~~~A~~lG~~lA 37 (213)
|+|+|||||=.+..--+...|++..+.+.
T Consensus 1 m~i~i~gGsFdP~H~GHl~la~~a~~~~~ 29 (342)
T PRK07152 1 MKIAIFGGSFDPIHKGHINIAKKAIKKLK 29 (342)
T ss_pred CeEEEEeeCCCCcCHHHHHHHHHHHHHhC
Confidence 36999999987777777777776665543
No 301
>PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins.
Probab=23.20 E-value=1.5e+02 Score=20.74 Aligned_cols=33 Identities=18% Similarity=0.174 Sum_probs=20.1
Q ss_pred ceEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCeEEE
Q 028138 9 KRICVFCGSSSGKKATYQEAAVELGKELVERKLDLVY 45 (213)
Q Consensus 9 ~~I~V~ggs~~~~~~~~~~~A~~lG~~lA~~G~~lv~ 45 (213)
+.+-|++..- + ++...=.++++.|+++|+.++.
T Consensus 16 k~~v~i~HG~-~---eh~~ry~~~a~~L~~~G~~V~~ 48 (79)
T PF12146_consen 16 KAVVVIVHGF-G---EHSGRYAHLAEFLAEQGYAVFA 48 (79)
T ss_pred CEEEEEeCCc-H---HHHHHHHHHHHHHHhCCCEEEE
Confidence 4555554433 3 2222335788889999999873
No 302
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=23.17 E-value=2.1e+02 Score=26.96 Aligned_cols=68 Identities=24% Similarity=0.275 Sum_probs=35.5
Q ss_pred eEEEcCCCcChhHHHHHHHHhcCCeEEEEeCCCCCCCCCCCCCCceeeecCCHHHHHHHHHHhcCeEEEecCCCCcHH
Q 028138 42 DLVYGGGSVGLMGLVSQAVHDGGRHVLGVIPKTLTPREITGDPVGEVKTVSDMHQRKAEMARQADAFIALPGGYGTLE 119 (213)
Q Consensus 42 ~lv~GGg~~GlM~a~~~ga~~~gG~viGv~P~~~~~~e~~~~~~~~~~~~~~~~~R~~~l~~~sDa~IvlpGG~GTL~ 119 (213)
.+|.|.|+.| ..+++-++..|.+|+.+-.+.....+.....+ + ..++. -.++.+|.+|...|-.++++
T Consensus 215 VlViG~G~IG--~~vA~~lr~~Ga~ViV~d~dp~ra~~A~~~G~-~---v~~l~----eal~~aDVVI~aTG~~~vI~ 282 (425)
T PRK05476 215 VVVAGYGDVG--KGCAQRLRGLGARVIVTEVDPICALQAAMDGF-R---VMTME----EAAELGDIFVTATGNKDVIT 282 (425)
T ss_pred EEEECCCHHH--HHHHHHHHhCCCEEEEEcCCchhhHHHHhcCC-E---ecCHH----HHHhCCCEEEECCCCHHHHH
Confidence 4577876644 34566677778887776322111111101111 1 12332 23468999999886655555
No 303
>PRK07308 flavodoxin; Validated
Probab=23.15 E-value=1.1e+02 Score=23.54 Aligned_cols=40 Identities=25% Similarity=0.330 Sum_probs=19.8
Q ss_pred HhcCeEEEecCCC--CcHH-HHHHHHHHHH-hCCCCCceEEEec
Q 028138 103 RQADAFIALPGGY--GTLE-ELLEVITWAQ-LGIHRKPVGLLNV 142 (213)
Q Consensus 103 ~~sDa~IvlpGG~--GTL~-Ei~~~~~~~~-lg~~~kPiill~~ 142 (213)
..+|++|+...-. |.+. .+...+.+.+ ....++++.+++.
T Consensus 47 ~~~d~vi~g~~t~g~G~~p~~~~~fl~~l~~~~l~~k~~~vfG~ 90 (146)
T PRK07308 47 EDADIAIVATYTYGDGELPDEIVDFYEDLADLDLSGKIYGVVGS 90 (146)
T ss_pred ccCCEEEEEeCccCCCCCCHHHHHHHHHHhcCCCCCCEEEEEee
Confidence 3456555544333 3444 3433333222 2235788888865
No 304
>PRK05867 short chain dehydrogenase; Provisional
Probab=23.14 E-value=4.2e+02 Score=21.69 Aligned_cols=62 Identities=13% Similarity=0.138 Sum_probs=0.0
Q ss_pred CcccccCCceEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEcCCCcChhHHHHHHHHhcCCeEEEE
Q 028138 1 MEDAKSRFKRICVFCGSSSGKKATYQEAAVELGKELVERKLDLVYGGGSVGLMGLVSQAVHDGGRHVLGV 70 (213)
Q Consensus 1 ~~~~~~~~~~I~V~ggs~~~~~~~~~~~A~~lG~~lA~~G~~lv~GGg~~GlM~a~~~ga~~~gG~viGv 70 (213)
|...+-+-++|-|.|+++ -..+++.+.|+++|+.|+..+-...-.+...+-..+.++.+..+
T Consensus 2 ~~~~~~~~k~vlVtGas~--------gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~ 63 (253)
T PRK05867 2 LDLFDLHGKRALITGAST--------GIGKRVALAYVEAGAQVAIAARHLDALEKLADEIGTSGGKVVPV 63 (253)
T ss_pred cccccCCCCEEEEECCCc--------hHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCeEEEE
No 305
>PRK09004 FMN-binding protein MioC; Provisional
Probab=23.12 E-value=1.9e+02 Score=22.65 Aligned_cols=9 Identities=22% Similarity=0.508 Sum_probs=4.5
Q ss_pred HhcCCeEEE
Q 028138 61 HDGGRHVLG 69 (213)
Q Consensus 61 ~~~gG~viG 69 (213)
.+.|+..++
T Consensus 110 ~~lGa~~v~ 118 (146)
T PRK09004 110 KAKGAKQIG 118 (146)
T ss_pred HHcCCeEee
Confidence 345655544
No 306
>PLN02271 serine hydroxymethyltransferase
Probab=23.02 E-value=82 Score=30.98 Aligned_cols=39 Identities=33% Similarity=0.404 Sum_probs=26.3
Q ss_pred HHHHHHHHHHCCCeEEEcCCC----------cChhHHHHHHHHhcCCeE
Q 028138 29 AVELGKELVERKLDLVYGGGS----------VGLMGLVSQAVHDGGRHV 67 (213)
Q Consensus 29 A~~lG~~lA~~G~~lv~GGg~----------~GlM~a~~~ga~~~gG~v 67 (213)
|+.|++.|.++|+.||+||=. .|+.+..+.-.++.-|.+
T Consensus 444 AkaLA~~L~~~G~~vv~ggTdnHlvLvDl~~~g~~G~~ae~~Le~~~I~ 492 (586)
T PLN02271 444 AQALASALLRRKCRLVTGGTDNHLLLWDLTTLGLTGKNYEKVCEMCHIT 492 (586)
T ss_pred HHHHHHHHHHCCCeEeeCCCCcceeeecCcccCCCHHHHHHHHHHcCeE
Confidence 556778888899999997632 255566666666654433
No 307
>cd04193 UDPGlcNAc_PPase UDPGlcNAc pyrophosphorylase catalayzes the synthesis of UDPGlcNAc. UDP-N-acetylglucosamine (UDPGlcNAc) pyrophosphorylase (UAP) (also named GlcNAc1P uridyltransferase), catalyzes the reversible conversion of UTP and GlcNAc1 to PPi and UDPGlcNAc. UDP-N-acetylglucosamine (UDPGlcNAc), the activated form of GlcNAc, is a key precursor of N- and O-linked glycosylations. It is essential for the synthesis of chitin (a major component of the fungal cell wall) and of the glycosylphosphatidylinositol (GPI) linker which anchors a variety of cell surface proteins to the plasma membrane. In bacteria, UDPGlcNAc represents an essential precursor for both peptidoglycan and lipopolysaccharide biosynthesis. Human UAP has two isoforms, resulting from alternative splicing of a single gene and differing by the presence or absence of 17 amino acids. UDPGlcNAc pyrophosphorylase shares significant sequence and structure conservation with UDPglucose pyrophosphorylase.
Probab=23.01 E-value=3.1e+02 Score=24.64 Aligned_cols=74 Identities=19% Similarity=0.201 Sum_probs=38.5
Q ss_pred HHHhcC-eEEEecCCCCcHHHHHHHHHHHHhCC-CCCceEEEec---CccchHHHHHHHHH---HHcCCCCccccCcEEE
Q 028138 101 MARQAD-AFIALPGGYGTLEELLEVITWAQLGI-HRKPVGLLNV---DGFYNSLLSFVDKA---VDEGFISPTARRIIIS 172 (213)
Q Consensus 101 l~~~sD-a~IvlpGG~GTL~Ei~~~~~~~~lg~-~~kPiill~~---~g~~~~l~~~l~~~---~~~g~i~~~~~~~i~~ 172 (213)
+++... ++|+|-||.|| ++|. .+||.+-+.. .-+.+-..+.+..+ ..+.+-.......++.
T Consensus 10 ~i~~~~va~viLaGG~GT-----------RLg~~~PK~l~pv~~~~~k~ll~~~~e~l~~l~~~~~~~~~~~~~ip~~im 78 (323)
T cd04193 10 AIAEGKVAVLLLAGGQGT-----------RLGFDGPKGMFPVGLPSKKSLFQLQAERILKLQELAGEASGKKVPIPWYIM 78 (323)
T ss_pred HHhcCCEEEEEECCCccc-----------ccCCCCCeEEEEecCCCCCcHHHHHHHHHHHHHHHHhhccCCCCCceEEEE
Confidence 344444 68899999999 3343 3677766642 23666665555443 1111101111223333
Q ss_pred cC--CHHHHHHHHHh
Q 028138 173 AP--TAKKLVRQLEE 185 (213)
Q Consensus 173 ~~--~~ee~~~~l~~ 185 (213)
+. +-++..+++++
T Consensus 79 tS~~t~~~t~~~~~~ 93 (323)
T cd04193 79 TSEATHEETRKFFKE 93 (323)
T ss_pred cChhHhHHHHHHHHh
Confidence 33 45667777765
No 308
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=22.98 E-value=91 Score=27.56 Aligned_cols=30 Identities=17% Similarity=0.199 Sum_probs=24.6
Q ss_pred HHHHHHhcCeEEEecCCCCcHHHHHHHHHH
Q 028138 98 KAEMARQADAFIALPGGYGTLEELLEVITW 127 (213)
Q Consensus 98 ~~~l~~~sDa~IvlpGG~GTL~Ei~~~~~~ 127 (213)
-+++.+.++.-|++.+|+||-+....++.+
T Consensus 181 l~~i~e~~~vpVivdAGIgt~sDa~~AmEl 210 (267)
T CHL00162 181 LQIIIENAKIPVIIDAGIGTPSEASQAMEL 210 (267)
T ss_pred HHHHHHcCCCcEEEeCCcCCHHHHHHHHHc
Confidence 456777888999999999999999888754
No 309
>TIGR01198 pgl 6-phosphogluconolactonase. This enzyme of the pentose phosphate pathway is often found as a part of a multifunctional protein with
Probab=22.98 E-value=4.6e+02 Score=22.09 Aligned_cols=42 Identities=26% Similarity=0.307 Sum_probs=27.2
Q ss_pred HHhcCeEEEecCCCCcHHHHHHHHHHHHhCCCCCceEEEecCccc
Q 028138 102 ARQADAFIALPGGYGTLEELLEVITWAQLGIHRKPVGLLNVDGFY 146 (213)
Q Consensus 102 ~~~sDa~IvlpGG~GTL~Ei~~~~~~~~lg~~~kPiill~~~g~~ 146 (213)
.+...+.|+|+||. |...+++.+.-. ...=..|.++..+.+|
T Consensus 25 ~~~~~~~lalsGGs-tp~~~y~~L~~~--~i~w~~v~~f~~DER~ 66 (233)
T TIGR01198 25 AERGQFSLALSGGR-SPIALLEALAAQ--PLDWSRIHLFLGDERY 66 (233)
T ss_pred HhcCcEEEEECCCc-cHHHHHHHHhhC--CCCcceEEEEEecccc
Confidence 34567899999995 777788777632 2222456666666666
No 310
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=22.97 E-value=3.8e+02 Score=22.07 Aligned_cols=64 Identities=23% Similarity=0.334 Sum_probs=38.6
Q ss_pred cCeEEEecCCCCcHHHHHHHHHHHHhCCCCCceEEEecCccchHHHHHHHHHHHcCCCCccccCcEEEcCCH-HHHHHHH
Q 028138 105 ADAFIALPGGYGTLEELLEVITWAQLGIHRKPVGLLNVDGFYNSLLSFVDKAVDEGFISPTARRIIISAPTA-KKLVRQL 183 (213)
Q Consensus 105 sDa~IvlpGG~GTL~Ei~~~~~~~~lg~~~kPiill~~~g~~~~l~~~l~~~~~~g~i~~~~~~~i~~~~~~-ee~~~~l 183 (213)
.+.+|+.+||+=.-+|-...+. ....||.|+.+ ++ .+++.+ ..+....+....++ +++-+.+
T Consensus 72 ~~~ViaTGGG~v~~~enr~~l~------~~g~vv~L~~~--~e---~l~~Rl------~~~~~RPll~~~~~~~~l~~L~ 134 (172)
T COG0703 72 DNAVIATGGGAVLSEENRNLLK------KRGIVVYLDAP--FE---TLYERL------QRDRKRPLLQTEDPREELEELL 134 (172)
T ss_pred CCeEEECCCccccCHHHHHHHH------hCCeEEEEeCC--HH---HHHHHh------ccccCCCcccCCChHHHHHHHH
Confidence 3699999999999999887763 12366766653 22 333322 23344556667777 4444444
Q ss_pred Hh
Q 028138 184 EE 185 (213)
Q Consensus 184 ~~ 185 (213)
.+
T Consensus 135 ~~ 136 (172)
T COG0703 135 EE 136 (172)
T ss_pred HH
Confidence 44
No 311
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=22.93 E-value=3.4e+02 Score=23.28 Aligned_cols=68 Identities=19% Similarity=0.312 Sum_probs=38.2
Q ss_pred HHHHHhcCeEEEec--CCCCcHHHHHHHHHHHHhCCCCCceEEEecCccchHHHHHHHHHHHcCCCCccccCcEEEcCCH
Q 028138 99 AEMARQADAFIALP--GGYGTLEELLEVITWAQLGIHRKPVGLLNVDGFYNSLLSFVDKAVDEGFISPTARRIIISAPTA 176 (213)
Q Consensus 99 ~~l~~~sDa~Ivlp--GG~GTL~Ei~~~~~~~~lg~~~kPiill~~~g~~~~l~~~l~~~~~~g~i~~~~~~~i~~~~~~ 176 (213)
.-++..||++|.-. .|+|.- +.|++. .++|||..+..+. ..+ +.+| ....+.-.+|+
T Consensus 265 ~~~~~~~d~~v~ps~~E~~~~~--~~EAma------~g~PvI~s~~~~~-~e~-------i~~~-----~~G~~~~~~~~ 323 (371)
T cd04962 265 EELLSIADLFLLPSEKESFGLA--ALEAMA------CGVPVVASNAGGI-PEV-------VKHG-----ETGFLVDVGDV 323 (371)
T ss_pred HHHHHhcCEEEeCCCcCCCccH--HHHHHH------cCCCEEEeCCCCc-hhh-------hcCC-----CceEEcCCCCH
Confidence 34567899987543 344432 556654 5799999876543 221 1111 11223334578
Q ss_pred HHHHHHHHhhc
Q 028138 177 KKLVRQLEEYV 187 (213)
Q Consensus 177 ee~~~~l~~~~ 187 (213)
+++.+.+.+..
T Consensus 324 ~~l~~~i~~l~ 334 (371)
T cd04962 324 EAMAEYALSLL 334 (371)
T ss_pred HHHHHHHHHHH
Confidence 88888777654
No 312
>cd04260 AAK_AKi-DapG-BS AAK_AKi-DapG-BS: Amino Acid Kinase Superfamily (AAK), AKi-DapG; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the diaminopimelate-sensitive aspartokinase isoenzyme AKI (DapG), a monofunctional class enzyme found in Bacilli (Bacillus subtilis 168), Clostridia, and Actinobacteria bacterial species. In Bacillus subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The B. subtilis AKI is tetrameric consisting of two alpha and two bet
Probab=22.90 E-value=1.1e+02 Score=26.13 Aligned_cols=26 Identities=23% Similarity=0.314 Sum_probs=18.0
Q ss_pred EEcCCCCCCCHHHHHHHHHHHHHHHH
Q 028138 13 VFCGSSSGKKATYQEAAVELGKELVE 38 (213)
Q Consensus 13 V~ggs~~~~~~~~~~~A~~lG~~lA~ 38 (213)
=||||...+.+.+.+.++++.+...+
T Consensus 5 K~GGs~l~~~~~~~~~~~~I~~~~~~ 30 (244)
T cd04260 5 KFGGTSVSTKERREQVAKKVKQAVDE 30 (244)
T ss_pred EECchhcCCHHHHHHHHHHHHHHHHC
Confidence 38899887555676777777766554
No 313
>PRK06180 short chain dehydrogenase; Provisional
Probab=22.90 E-value=1.3e+02 Score=25.43 Aligned_cols=32 Identities=16% Similarity=-0.024 Sum_probs=21.7
Q ss_pred CceEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEcC
Q 028138 8 FKRICVFCGSSSGKKATYQEAAVELGKELVERKLDLVYGG 47 (213)
Q Consensus 8 ~~~I~V~ggs~~~~~~~~~~~A~~lG~~lA~~G~~lv~GG 47 (213)
.++|.|.|+++. ..+.+.+.|+++|+.|+..+
T Consensus 4 ~~~vlVtGasgg--------iG~~la~~l~~~G~~V~~~~ 35 (277)
T PRK06180 4 MKTWLITGVSSG--------FGRALAQAALAAGHRVVGTV 35 (277)
T ss_pred CCEEEEecCCCh--------HHHHHHHHHHhCcCEEEEEe
Confidence 346888877642 35667777788898876544
No 314
>KOG0832 consensus Mitochondrial/chloroplast ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=22.80 E-value=2.5e+02 Score=24.58 Aligned_cols=46 Identities=24% Similarity=0.332 Sum_probs=37.4
Q ss_pred CHHHHHHHHHHHHHHHHC-CCeEEEcCCCcChhHHHHHHHHhcCCeEE
Q 028138 22 KATYQEAAVELGKELVER-KLDLVYGGGSVGLMGLVSQAVHDGGRHVL 68 (213)
Q Consensus 22 ~~~~~~~A~~lG~~lA~~-G~~lv~GGg~~GlM~a~~~ga~~~gG~vi 68 (213)
.-.|.+.|-.+..-+|.+ |..+..|-- .|-+.-+.+.|++++|.++
T Consensus 90 T~~~Lr~A~~fVa~vA~r~GiILFv~tn-~~~~~~ve~aA~r~~gy~~ 136 (251)
T KOG0832|consen 90 TASYLRRALNFVAHVAHRGGIILFVGTN-NGFKDLVERAARRAGGYSH 136 (251)
T ss_pred HHHHHHHHHHHHHHHHhcCCeEEEEecC-cchHHHHHHHHHHhcCcee
Confidence 357888999999999986 565556654 5999999999999999765
No 315
>cd01356 AcnX_swivel Putative Aconitase X swivel domain. It is predicted by comparative genomic analysis. The proteins are mainly found in archaea and proteobacteria. They are distantly related to Aconitase family of proteins by sequence similarity and seconary structure prediction. The functions have not yet been experimentally characterized. Thus, the prediction should be treated with caution.
Probab=22.79 E-value=1.6e+02 Score=23.03 Aligned_cols=36 Identities=22% Similarity=0.309 Sum_probs=26.2
Q ss_pred hcCeEEEecCCCCcHHHHHHHHHHHHhCCCCCceEE
Q 028138 104 QADAFIALPGGYGTLEELLEVITWAQLGIHRKPVGL 139 (213)
Q Consensus 104 ~sDa~IvlpGG~GTL~Ei~~~~~~~~lg~~~kPiil 139 (213)
.++-+++||+|.|+-.--.-.|.+.+.|..++-+++
T Consensus 42 i~gkILv~p~~kGSt~gs~vl~~l~~~g~aP~AiI~ 77 (123)
T cd01356 42 IAGKVLVLPGGKGSTVGSYVLYELARNGTAPAAIVF 77 (123)
T ss_pred ccceEEEecCCCCcchHHHHHHHHHHcCCCCeeEee
Confidence 478899999999998877777776665654444443
No 316
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=22.76 E-value=1.9e+02 Score=30.33 Aligned_cols=40 Identities=25% Similarity=0.348 Sum_probs=30.4
Q ss_pred HHHHCCCeEEEcCCCcC---hhHHHHHHHHhcCCeEEEEeCCC
Q 028138 35 ELVERKLDLVYGGGSVG---LMGLVSQAVHDGGRHVLGVIPKT 74 (213)
Q Consensus 35 ~lA~~G~~lv~GGg~~G---lM~a~~~ga~~~gG~viGv~P~~ 74 (213)
.+..+++.+|+|+..+| +|.++.+...+.|..|+|+.|..
T Consensus 358 il~s~~v~vv~G~AGTGKTT~l~~~~~~~e~~G~~V~~~ApTG 400 (988)
T PRK13889 358 VTDGRDLGVVVGYAGTGKSAMLGVAREAWEAAGYEVRGAALSG 400 (988)
T ss_pred HhcCCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEecCcH
Confidence 34446788999987777 78877777777788999998753
No 317
>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]
Probab=22.75 E-value=3.2e+02 Score=27.47 Aligned_cols=50 Identities=26% Similarity=0.367 Sum_probs=34.2
Q ss_pred CCCHHHHHHHHHHHHHHH---------------HCCCeEE-EcCCCcChhHHHHHHHHhcCCeEEEE
Q 028138 20 GKKATYQEAAVELGKELV---------------ERKLDLV-YGGGSVGLMGLVSQAVHDGGRHVLGV 70 (213)
Q Consensus 20 ~~~~~~~~~A~~lG~~lA---------------~~G~~lv-~GGg~~GlM~a~~~ga~~~gG~viGv 70 (213)
+....||..|.++|..-- +.++.|+ .++.|+|+|..+++-. -.|+.+|||
T Consensus 10 ~r~Dk~Y~lAke~GyrsRsaFKLlQln~ky~fl~~a~~vlDLcaAPG~W~QVA~q~~-pv~slivGv 75 (780)
T KOG1098|consen 10 GRLDKYYRLAKELGYRSRSAFKLLQLNKKYKFLEKAHVVLDLCAAPGGWLQVASQSM-PVGSLIVGV 75 (780)
T ss_pred ccchHHHHHHHHhchhHHHHHHHHHHHHHhccccccchheeeccCCcHHHHHHHHhC-CCCceEEEe
Confidence 335678889999984321 1344333 6778888998887744 378899998
No 318
>PRK06398 aldose dehydrogenase; Validated
Probab=22.72 E-value=2e+02 Score=24.05 Aligned_cols=35 Identities=17% Similarity=0.093 Sum_probs=0.0
Q ss_pred CcccccCCceEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCeEEE
Q 028138 1 MEDAKSRFKRICVFCGSSSGKKATYQEAAVELGKELVERKLDLVY 45 (213)
Q Consensus 1 ~~~~~~~~~~I~V~ggs~~~~~~~~~~~A~~lG~~lA~~G~~lv~ 45 (213)
|++.+.+ +|.|.|+++ -..+++++.|+++|+.|+.
T Consensus 1 ~~~l~gk--~vlItGas~--------gIG~~ia~~l~~~G~~Vi~ 35 (258)
T PRK06398 1 DLGLKDK--VAIVTGGSQ--------GIGKAVVNRLKEEGSNVIN 35 (258)
T ss_pred CCCCCCC--EEEEECCCc--------hHHHHHHHHHHHCCCeEEE
No 319
>PRK08569 rpl18p 50S ribosomal protein L18P; Reviewed
Probab=22.64 E-value=2e+02 Score=24.30 Aligned_cols=39 Identities=15% Similarity=-0.039 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHH----CCCeEE---EcCCC---cChhHHHHHHHHhcCC
Q 028138 27 EAAVELGKELVE----RKLDLV---YGGGS---VGLMGLVSQAVHDGGR 65 (213)
Q Consensus 27 ~~A~~lG~~lA~----~G~~lv---~GGg~---~GlM~a~~~ga~~~gG 65 (213)
+.|+.+|.+||+ .|+.-| -||.. .|-..|+++||.++|-
T Consensus 80 ~AAy~vG~llA~ral~kGi~~vvfDrGg~~yh~gGRV~A~akgArd~GL 128 (193)
T PRK08569 80 PAAYLTGLLAGKKALKAGVEEAVLDIGLHRPTKGSRVFAALKGAIDAGL 128 (193)
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEecCCccccCCccHHHHHHHHHHcCC
Confidence 567888888876 454432 34433 2789999999999774
No 320
>PRK07890 short chain dehydrogenase; Provisional
Probab=22.63 E-value=3.9e+02 Score=21.81 Aligned_cols=54 Identities=20% Similarity=0.213 Sum_probs=0.0
Q ss_pred ceEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEcCCCcChhHHHHHHHHhcCCeEEEE
Q 028138 9 KRICVFCGSSSGKKATYQEAAVELGKELVERKLDLVYGGGSVGLMGLVSQAVHDGGRHVLGV 70 (213)
Q Consensus 9 ~~I~V~ggs~~~~~~~~~~~A~~lG~~lA~~G~~lv~GGg~~GlM~a~~~ga~~~gG~viGv 70 (213)
++|.|.|+++. ..+.+++.|+++|+.|+..+-...-.+.........+.++..+
T Consensus 6 k~vlItGa~~~--------IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~ 59 (258)
T PRK07890 6 KVVVVSGVGPG--------LGRTLAVRAARAGADVVLAARTAERLDEVAAEIDDLGRRALAV 59 (258)
T ss_pred CEEEEECCCCc--------HHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHhCCceEEE
No 321
>PRK07102 short chain dehydrogenase; Provisional
Probab=22.62 E-value=1.3e+02 Score=24.67 Aligned_cols=30 Identities=13% Similarity=0.139 Sum_probs=25.3
Q ss_pred CeEEEcCCCcChhHHHHHHHHhcCCeEEEEe
Q 028138 41 LDLVYGGGSVGLMGLVSQAVHDGGRHVLGVI 71 (213)
Q Consensus 41 ~~lv~GGg~~GlM~a~~~ga~~~gG~viGv~ 71 (213)
..+|+||.. |+-.++++...+.|-.|+.+.
T Consensus 3 ~vlItGas~-giG~~~a~~l~~~G~~Vi~~~ 32 (243)
T PRK07102 3 KILIIGATS-DIARACARRYAAAGARLYLAA 32 (243)
T ss_pred EEEEEcCCc-HHHHHHHHHHHhcCCEEEEEe
Confidence 368999885 999999999998888887774
No 322
>cd01412 SIRT5_Af1_CobB SIRT5_Af1_CobB: Eukaryotic, archaeal and prokaryotic group (class3) which includes human sirtuin SIRT5, Archaeoglobus fulgidus Sir2-Af1, and E. coli CobB; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. CobB is a bacterial sirtuin that deacetylates acetyl-CoA synthetase at an active site lysine to stimulate its enzymatic activity.
Probab=22.59 E-value=3.6e+02 Score=22.43 Aligned_cols=66 Identities=15% Similarity=0.066 Sum_probs=37.9
Q ss_pred HHHHHHHhcCeEEEecCCCCcHHHHHHHHHHHHh-CCCCCceEEEecCccchHHHHHHHHHHHcCCCCccccCcEEEcCC
Q 028138 97 RKAEMARQADAFIALPGGYGTLEELLEVITWAQL-GIHRKPVGLLNVDGFYNSLLSFVDKAVDEGFISPTARRIIISAPT 175 (213)
Q Consensus 97 R~~~l~~~sDa~IvlpGG~GTL~Ei~~~~~~~~l-g~~~kPiill~~~g~~~~l~~~l~~~~~~g~i~~~~~~~i~~~~~ 175 (213)
+....++.+|.+|+++ -.++.. -++.+... ...+.|++++|.+.-. ++ ...-+.+..+
T Consensus 157 ~~~~~~~~~dl~lvlG-Tsl~v~---p~~~l~~~~~~~~~~~i~iN~~~~~---------------~~--~~~~~~i~g~ 215 (224)
T cd01412 157 EAVEALAKADLFLVIG-TSGVVY---PAAGLPEEAKERGARVIEINPEPTP---------------LS--PIADFAFRGK 215 (224)
T ss_pred HHHHHHHcCCEEEEEC-cCccch---hHHHHHHHHHHCCCeEEEECCCCCC---------------CC--CcCCEEEECC
Confidence 3334456899998865 333333 23332222 1356899999975221 11 2234667788
Q ss_pred HHHHHHHH
Q 028138 176 AKKLVRQL 183 (213)
Q Consensus 176 ~ee~~~~l 183 (213)
..++++.|
T Consensus 216 ~~~~l~~l 223 (224)
T cd01412 216 AGEVLPAL 223 (224)
T ss_pred HHHHHHHh
Confidence 99888765
No 323
>PRK07035 short chain dehydrogenase; Provisional
Probab=22.52 E-value=1.3e+02 Score=24.81 Aligned_cols=30 Identities=17% Similarity=0.132 Sum_probs=18.9
Q ss_pred ceEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEc
Q 028138 9 KRICVFCGSSSGKKATYQEAAVELGKELVERKLDLVYG 46 (213)
Q Consensus 9 ~~I~V~ggs~~~~~~~~~~~A~~lG~~lA~~G~~lv~G 46 (213)
++|.|.|+|+. ..+.+.+.|+++|+.|+--
T Consensus 9 k~vlItGas~g--------IG~~l~~~l~~~G~~Vi~~ 38 (252)
T PRK07035 9 KIALVTGASRG--------IGEAIAKLLAQQGAHVIVS 38 (252)
T ss_pred CEEEEECCCcH--------HHHHHHHHHHHCCCEEEEE
Confidence 45777765532 3456677777788877643
No 324
>KOG2467 consensus Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism]
Probab=22.47 E-value=83 Score=29.53 Aligned_cols=35 Identities=31% Similarity=0.401 Sum_probs=25.8
Q ss_pred HHHHHHHHHHCCCeEEEcCCC----------cChhHHHHHHHHhc
Q 028138 29 AVELGKELVERKLDLVYGGGS----------VGLMGLVSQAVHDG 63 (213)
Q Consensus 29 A~~lG~~lA~~G~~lv~GGg~----------~GlM~a~~~ga~~~ 63 (213)
|+.|+..|-++||.||+||-. .|+.++.++-.++.
T Consensus 330 akala~~l~~~Gy~lvtgGTDnHlvLvDLr~~G~dGarvE~vle~ 374 (477)
T KOG2467|consen 330 AKALASALISRGYKLVTGGTDNHLVLVDLRPKGVDGARVEKVLEL 374 (477)
T ss_pred HHHHHHHHHHcCceEecCCccceEEEEeccccCCchHHHHHHHHH
Confidence 556677777799999999842 47777777777663
No 325
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=22.41 E-value=1.3e+02 Score=24.60 Aligned_cols=30 Identities=20% Similarity=0.129 Sum_probs=17.5
Q ss_pred ceEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEc
Q 028138 9 KRICVFCGSSSGKKATYQEAAVELGKELVERKLDLVYG 46 (213)
Q Consensus 9 ~~I~V~ggs~~~~~~~~~~~A~~lG~~lA~~G~~lv~G 46 (213)
++|-|.|+++. ....+.+.|+++|+.|+.-
T Consensus 6 k~vlItGas~g--------IG~~ia~~l~~~G~~vi~~ 35 (248)
T TIGR01832 6 KVALVTGANTG--------LGQGIAVGLAEAGADIVGA 35 (248)
T ss_pred CEEEEECCCch--------HHHHHHHHHHHCCCEEEEE
Confidence 45666655431 3455666667777776543
No 326
>KOG1014 consensus 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3 [Lipid transport and metabolism]
Probab=22.28 E-value=1.1e+02 Score=27.73 Aligned_cols=51 Identities=22% Similarity=0.373 Sum_probs=32.0
Q ss_pred ccCCceEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEcCCCcChhHHHHHHHHh
Q 028138 5 KSRFKRICVFCGSSSGKKATYQEAAVELGKELVERKLDLVYGGGSVGLMGLVSQAVHD 62 (213)
Q Consensus 5 ~~~~~~I~V~ggs~~~~~~~~~~~A~~lG~~lA~~G~~lv~GGg~~GlM~a~~~ga~~ 62 (213)
.++...-||.-|+..+...+| |+ .||++|+.++-=+-...=-+++++.-.+
T Consensus 45 ~~~~g~WAVVTGaTDGIGKay---A~----eLAkrG~nvvLIsRt~~KL~~v~kEI~~ 95 (312)
T KOG1014|consen 45 KEKLGSWAVVTGATDGIGKAY---AR----ELAKRGFNVVLISRTQEKLEAVAKEIEE 95 (312)
T ss_pred HHhcCCEEEEECCCCcchHHH---HH----HHHHcCCEEEEEeCCHHHHHHHHHHHHH
Confidence 345557788878776644444 34 4466888888777665655555554443
No 327
>PF12965 DUF3854: Domain of unknown function (DUF3854); InterPro: IPR024385 This is a family of uncharacterised proteins, found by clustering human gut metagenomic sequences [].
Probab=22.25 E-value=3.2e+02 Score=21.20 Aligned_cols=49 Identities=20% Similarity=0.320 Sum_probs=33.8
Q ss_pred ceEEEEcCCCC--CCCHHHHHHHHHHHHHHHHCCCeEE----E-cCCCcChhHHHHH
Q 028138 9 KRICVFCGSSS--GKKATYQEAAVELGKELVERKLDLV----Y-GGGSVGLMGLVSQ 58 (213)
Q Consensus 9 ~~I~V~ggs~~--~~~~~~~~~A~~lG~~lA~~G~~lv----~-GGg~~GlM~a~~~ 58 (213)
+.|.|...+.. .......+..++++++|.++|+.+- . +.+. |+...++.
T Consensus 69 r~v~iaFD~D~~~~Tn~~V~~a~~~l~~~L~~~G~~v~~~~w~~~~~K-GiDD~l~~ 124 (130)
T PF12965_consen 69 REVYIAFDADTKPKTNKNVRRAIKRLGKLLKEAGCKVKIITWPPGEGK-GIDDLLAA 124 (130)
T ss_pred ceEEEEecCCCccchhHHHHHHHHHHHHHHHHCCCEEEEEEeCCCCCC-CHhHHHHh
Confidence 34555556653 2346677788999999999999873 2 5665 88877654
No 328
>PF01202 SKI: Shikimate kinase; InterPro: IPR000623 Shikimate kinase (2.7.1.71 from EC) catalyses the fifth step in the biosynthesis of aromatic amino acids from chorismate (the so-called shikimate pathway) []. The enzyme catalyses the following reaction: ATP + shikimate = ADP + shikimate-3-phosphate The protein is found in bacteria (gene aroK or aroL), plants and fungi (where it is part of a multifunctional enzyme that catalyses five consecutive steps in this pathway). In 1994, the 3D structure of shikimate kinase was predicted to be very close to that of adenylate kinase, suggesting a functional similarity as well as an evolutionary relationship []. This prediction has since been confirmed experimentally. The protein is reported to possess an alpha/beta fold, consisting of a central sheet of five parallel beta-strands flanked by alpha-helices. Such a topology is very similar to that of adenylate kinase [].; GO: 0004765 shikimate kinase activity, 0005524 ATP binding; PDB: 3VAA_C 1KO8_B 1KO4_B 1KO1_A 1KOF_A 1KNQ_A 1KO5_A 1KAG_A 2PT5_D 1SHK_A ....
Probab=22.21 E-value=1.5e+02 Score=23.22 Aligned_cols=37 Identities=19% Similarity=0.218 Sum_probs=24.9
Q ss_pred HHHHHHHCCCeEEEcCCCcChhHHHHHHHHhcCCeEEEE
Q 028138 32 LGKELVERKLDLVYGGGSVGLMGLVSQAVHDGGRHVLGV 70 (213)
Q Consensus 32 lG~~lA~~G~~lv~GGg~~GlM~a~~~ga~~~gG~viGv 70 (213)
|.+.+.+++..|.|||| =++..-++..+...|.+|-+
T Consensus 55 l~~l~~~~~~VIa~GGG--~~~~~~~~~~L~~~g~vI~L 91 (158)
T PF01202_consen 55 LRELLKENNCVIACGGG--IVLKEENRELLKENGLVIYL 91 (158)
T ss_dssp HHHHHCSSSEEEEE-TT--GGGSHHHHHHHHHHSEEEEE
T ss_pred HHHHhccCcEEEeCCCC--CcCcHHHHHHHHhCCEEEEE
Confidence 33333444777788877 46767777788888888877
No 329
>PRK01185 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=22.20 E-value=1.8e+02 Score=25.59 Aligned_cols=34 Identities=9% Similarity=0.134 Sum_probs=23.8
Q ss_pred ceEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEc
Q 028138 9 KRICVFCGSSSGKKATYQEAAVELGKELVERKLDLVYG 46 (213)
Q Consensus 9 ~~I~V~ggs~~~~~~~~~~~A~~lG~~lA~~G~~lv~G 46 (213)
|+|+|+.- .. .+.-.+.+.++.++| ++|+.++..
T Consensus 1 m~i~iv~~--~~-~~~~~~~~~~i~~~l-~~g~~~~~~ 34 (271)
T PRK01185 1 MKVAFVIR--KD-CKRCIKIAKSIIELL-PPDWEIIYE 34 (271)
T ss_pred CEEEEEec--CC-CHHHHHHHHHHHHHH-hcCCEEEEe
Confidence 35899832 22 456667788888888 678888764
No 330
>TIGR01754 flav_RNR ribonucleotide reductase-associated flavodoxin, putative. This model represents a family of proteins found immediately downstream of ribonucleotide reductase genes in Xyella fastidiosa and some Gram-positive bacteria. It appears to be a highly divergent flavodoxin of the short chain type, more like the flavodoxins of the sulfate-reducing genus Desulfovibrio than like the NifF flavodoxins associated with nitrogen fixation.
Probab=22.17 E-value=1.5e+02 Score=22.60 Aligned_cols=41 Identities=17% Similarity=0.227 Sum_probs=22.5
Q ss_pred hcCeEEEecC--CCCcHH-HHHHHHHHHHhCCCCCceEEEecCc-cc
Q 028138 104 QADAFIALPG--GYGTLE-ELLEVITWAQLGIHRKPVGLLNVDG-FY 146 (213)
Q Consensus 104 ~sDa~IvlpG--G~GTL~-Ei~~~~~~~~lg~~~kPiill~~~g-~~ 146 (213)
.+|.+|+-.. +.|.+. ++..-+. ++...+|.+.++...+ .|
T Consensus 50 ~~d~iilgs~t~~~g~~p~~~~~fl~--~l~~~~k~~avfgtgd~~~ 94 (140)
T TIGR01754 50 NYDLVFLGTWTWERGRTPDEMKDFIA--ELGYKPSNVAIFGTGETQW 94 (140)
T ss_pred hCCEEEEEcCeeCCCcCCHHHHHHHH--HhcccCCEEEEEEcCCCCc
Confidence 3666555554 456554 4444443 3333568888887542 55
No 331
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=22.16 E-value=4.3e+02 Score=21.98 Aligned_cols=40 Identities=23% Similarity=0.304 Sum_probs=24.3
Q ss_pred HHHHHHHHhcCeEEEecC--CCCcHHHHHHHHHHHHhCCCCCceEEEecC
Q 028138 96 QRKAEMARQADAFIALPG--GYGTLEELLEVITWAQLGIHRKPVGLLNVD 143 (213)
Q Consensus 96 ~R~~~l~~~sDa~IvlpG--G~GTL~Ei~~~~~~~~lg~~~kPiill~~~ 143 (213)
+....+...||++|.... +.|+ =+.|++. .++||+..+..
T Consensus 270 ~~~~~~~~~ad~~l~~s~~e~~~~--~~~Ea~~------~g~PvI~~~~~ 311 (374)
T cd03817 270 EELPDYYKAADLFVFASTTETQGL--VLLEAMA------AGLPVVAVDAP 311 (374)
T ss_pred HHHHHHHHHcCEEEecccccCcCh--HHHHHHH------cCCcEEEeCCC
Confidence 334456778999775432 2232 2555554 47999988754
No 332
>PF04722 Ssu72: Ssu72-like protein; InterPro: IPR006811 The highly conserved and essential protein Ssu72 has intrinsic phosphatase activity and plays an essential role in the transcription cycle. Ssu72 was originally identified in a yeast genetic screen as enhancer of a defect caused by a mutation in the transcription initiation factor TFIIB []. It binds to TFIIB and is also involved in mRNA elongation. Ssu72 is further involved in both poly(A) dependent and independent termination. It is a subunit of the yeast cleavage and polyadenylation factor (CPF), which is part of the machinery for mRNA 3'-end formation. Ssu72 is also essential for transcription termination of snRNAs [].; GO: 0004721 phosphoprotein phosphatase activity, 0006397 mRNA processing, 0005634 nucleus; PDB: 3O2S_B 3O2Q_E 3FMV_H 3OMW_D 3P9Y_B 3FDF_A 3OMX_A.
Probab=22.14 E-value=1.9e+02 Score=24.37 Aligned_cols=33 Identities=24% Similarity=0.489 Sum_probs=20.9
Q ss_pred ceEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCeEE-EcCC
Q 028138 9 KRICVFCGSSSGKKATYQEAAVELGKELVERKLDLV-YGGG 48 (213)
Q Consensus 9 ~~I~V~ggs~~~~~~~~~~~A~~lG~~lA~~G~~lv-~GGg 48 (213)
.++||.|+|... +.-+.=+.|.++|+.|. +|-|
T Consensus 2 l~~avVCasN~N-------RSMEAH~~L~~~G~~V~SfGTG 35 (195)
T PF04722_consen 2 LRFAVVCASNQN-------RSMEAHNVLKKAGFNVRSFGTG 35 (195)
T ss_dssp SEEEEEESSSSS-------HHHHHHHHHHHTT-EEEEEE-S
T ss_pred ceEEEEccCCCC-------cCHHHHHHHHHCCCceEeecCC
Confidence 479999998653 22334456788999987 4444
No 333
>PRK00625 shikimate kinase; Provisional
Probab=22.10 E-value=3.6e+02 Score=21.75 Aligned_cols=76 Identities=20% Similarity=0.060 Sum_probs=38.4
Q ss_pred HHHHHHCCCeEEEcCCCcChhHHHHHHHHhcCCeEEEEeCC--CCC----CCCCCCCCCceeeecCCHHHHHHHHHHhcC
Q 028138 33 GKELVERKLDLVYGGGSVGLMGLVSQAVHDGGRHVLGVIPK--TLT----PREITGDPVGEVKTVSDMHQRKAEMARQAD 106 (213)
Q Consensus 33 G~~lA~~G~~lv~GGg~~GlM~a~~~ga~~~gG~viGv~P~--~~~----~~e~~~~~~~~~~~~~~~~~R~~~l~~~sD 106 (213)
-+.+...+..+.+|||. ++..-+...+..+|.+|-+-.. ... .+......-..-.+..-+..|....-+.||
T Consensus 67 l~~l~~~~~VIs~GGg~--~~~~e~~~~l~~~~~Vv~L~~~~e~l~~Rl~~R~~~~~~~~~~~~~~ll~~R~~~Y~~~ad 144 (173)
T PRK00625 67 LTSLPVIPSIVALGGGT--LMIEPSYAHIRNRGLLVLLSLPIATIYQRLQKRGLPERLKHAPSLEEILSQRIDRMRSIAD 144 (173)
T ss_pred HHHhccCCeEEECCCCc--cCCHHHHHHHhcCCEEEEEECCHHHHHHHHhcCCCCcccCcHHHHHHHHHHHHHHHHHHCC
Confidence 34454566666688774 5555555567777877766321 100 011110000000112234778887767788
Q ss_pred eEEE
Q 028138 107 AFIA 110 (213)
Q Consensus 107 a~Iv 110 (213)
..|-
T Consensus 145 ~~i~ 148 (173)
T PRK00625 145 YIFS 148 (173)
T ss_pred EEEe
Confidence 8764
No 334
>PRK08177 short chain dehydrogenase; Provisional
Probab=21.99 E-value=1.6e+02 Score=23.87 Aligned_cols=30 Identities=17% Similarity=0.211 Sum_probs=19.8
Q ss_pred ceEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEc
Q 028138 9 KRICVFCGSSSGKKATYQEAAVELGKELVERKLDLVYG 46 (213)
Q Consensus 9 ~~I~V~ggs~~~~~~~~~~~A~~lG~~lA~~G~~lv~G 46 (213)
++|-|.|+++. ..+.+.+.|+++|+.|+.-
T Consensus 2 k~vlItG~sg~--------iG~~la~~l~~~G~~V~~~ 31 (225)
T PRK08177 2 RTALIIGASRG--------LGLGLVDRLLERGWQVTAT 31 (225)
T ss_pred CEEEEeCCCch--------HHHHHHHHHHhCCCEEEEE
Confidence 46777766642 3556777778888877643
No 335
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=21.94 E-value=1.7e+02 Score=25.67 Aligned_cols=40 Identities=23% Similarity=0.534 Sum_probs=0.0
Q ss_pred cHHHHHHHHHHHHhCCCCCceEEEecCccchHHHHH-HHHHHHc
Q 028138 117 TLEELLEVITWAQLGIHRKPVGLLNVDGFYNSLLSF-VDKAVDE 159 (213)
Q Consensus 117 TL~Ei~~~~~~~~lg~~~kPiill~~~g~~~~l~~~-l~~~~~~ 159 (213)
|++.+++.+.-.+-.....|++++. ||+++..+ ++++.++
T Consensus 70 ~~~~~~~~~~~ir~~~~~~pivlm~---Y~N~i~~~G~e~F~~~ 110 (259)
T PF00290_consen 70 TLEKIFELVKEIRKKEPDIPIVLMT---YYNPIFQYGIERFFKE 110 (259)
T ss_dssp -HHHHHHHHHHHHHHCTSSEEEEEE----HHHHHHH-HHHHHHH
T ss_pred CHHHHHHHHHHHhccCCCCCEEEEe---eccHHhccchHHHHHH
No 336
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=21.88 E-value=2.1e+02 Score=28.76 Aligned_cols=36 Identities=19% Similarity=0.360 Sum_probs=29.5
Q ss_pred CCCeEEEcCCCcC---hhHHHHHHHHhcCCeEEEEeCCC
Q 028138 39 RKLDLVYGGGSVG---LMGLVSQAVHDGGRHVLGVIPKT 74 (213)
Q Consensus 39 ~G~~lv~GGg~~G---lM~a~~~ga~~~gG~viGv~P~~ 74 (213)
.++.+|+|+..+| ++.++...+...|..|+++.|..
T Consensus 368 ~~~~il~G~aGTGKTtll~~i~~~~~~~g~~V~~~ApTg 406 (744)
T TIGR02768 368 GDIAVVVGRAGTGKSTMLKAAREAWEAAGYRVIGAALSG 406 (744)
T ss_pred CCEEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEeCcH
Confidence 5788999987777 88888887777888999998763
No 337
>COG3980 spsG Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=21.86 E-value=1.5e+02 Score=26.73 Aligned_cols=41 Identities=12% Similarity=0.178 Sum_probs=32.2
Q ss_pred ceEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEcCCC
Q 028138 9 KRICVFCGSSSGKKATYQEAAVELGKELVERKLDLVYGGGS 49 (213)
Q Consensus 9 ~~I~V~ggs~~~~~~~~~~~A~~lG~~lA~~G~~lv~GGg~ 49 (213)
|+|.++|.++....--+-.+...|++.|.+.|+.+++=+.+
T Consensus 1 M~V~i~~Dgg~~iGmGHV~R~l~LA~~l~k~~~~~~fl~k~ 41 (318)
T COG3980 1 MKVLIRCDGGLEIGMGHVMRTLTLARELEKRGFACLFLTKQ 41 (318)
T ss_pred CcEEEEecCCcccCcchhhhHHHHHHHHHhcCceEEEeccc
Confidence 47899988887665555567789999999999998876554
No 338
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=21.82 E-value=2.1e+02 Score=30.49 Aligned_cols=37 Identities=22% Similarity=0.293 Sum_probs=31.1
Q ss_pred HHCCCeEEEcCCCcC---hhHHHHHHHHhcCCeEEEEeCC
Q 028138 37 VERKLDLVYGGGSVG---LMGLVSQAVHDGGRHVLGVIPK 73 (213)
Q Consensus 37 A~~G~~lv~GGg~~G---lM~a~~~ga~~~gG~viGv~P~ 73 (213)
...++.+|+|+..+| +|.++.+...+.|..|+|..|.
T Consensus 395 ~~~r~~~v~G~AGTGKTt~l~~~~~~~e~~G~~V~g~ApT 434 (1102)
T PRK13826 395 GPARIAAVVGRAGAGKTTMMKAAREAWEAAGYRVVGGALA 434 (1102)
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEcCc
Confidence 447899999988778 8999988888889999999775
No 339
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=21.81 E-value=4.5e+02 Score=21.50 Aligned_cols=32 Identities=16% Similarity=0.149 Sum_probs=21.5
Q ss_pred ceEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEcCC
Q 028138 9 KRICVFCGSSSGKKATYQEAAVELGKELVERKLDLVYGGG 48 (213)
Q Consensus 9 ~~I~V~ggs~~~~~~~~~~~A~~lG~~lA~~G~~lv~GGg 48 (213)
+++-|.|+|+ ...+.+.+.|+++|+.++.-+-
T Consensus 10 k~~lItGas~--------giG~~ia~~L~~~G~~vvl~~r 41 (254)
T PRK08085 10 KNILITGSAQ--------GIGFLLATGLAEYGAEIIINDI 41 (254)
T ss_pred CEEEEECCCC--------hHHHHHHHHHHHcCCEEEEEcC
Confidence 4677776664 2456777777888888875443
No 340
>PTZ00286 6-phospho-1-fructokinase; Provisional
Probab=21.72 E-value=5.4e+02 Score=24.54 Aligned_cols=33 Identities=21% Similarity=0.300 Sum_probs=24.1
Q ss_pred CCCeEEEcCCCcChhHHHHHHHHhc-----C-CeEEEEe
Q 028138 39 RKLDLVYGGGSVGLMGLVSQAVHDG-----G-RHVLGVI 71 (213)
Q Consensus 39 ~G~~lv~GGg~~GlM~a~~~ga~~~-----g-G~viGv~ 71 (213)
-.+.|||+||+.--|-++.+++... + ..++|+.
T Consensus 88 ~~iaIvT~GG~~PGlN~vIr~iv~~~~~~~~v~~V~Gi~ 126 (459)
T PTZ00286 88 VKAGIVTCGGLCPGLNVVIRELVMNLINNYGVKTIYGAK 126 (459)
T ss_pred cEEEEECCCCCChHHHHHHHHHHHHHHHhcCCcEEEEEe
Confidence 4677899999988888877776542 3 3788873
No 341
>PRK06300 enoyl-(acyl carrier protein) reductase; Provisional
Probab=21.65 E-value=1.3e+02 Score=26.54 Aligned_cols=18 Identities=22% Similarity=0.344 Sum_probs=12.0
Q ss_pred HHHHHHHHHHCCCeEEEc
Q 028138 29 AVELGKELVERKLDLVYG 46 (213)
Q Consensus 29 A~~lG~~lA~~G~~lv~G 46 (213)
.+.+++.||++|+.||..
T Consensus 23 G~a~A~~la~~Ga~Vvv~ 40 (299)
T PRK06300 23 GWGIAKALAEAGATILVG 40 (299)
T ss_pred HHHHHHHHHHCCCEEEEE
Confidence 456666677777777763
No 342
>KOG1207 consensus Diacetyl reductase/L-xylulose reductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=21.59 E-value=1.2e+02 Score=25.75 Aligned_cols=30 Identities=27% Similarity=0.471 Sum_probs=26.4
Q ss_pred CeEEEcCCCcChhHHHHHHHHhcCCeEEEEe
Q 028138 41 LDLVYGGGSVGLMGLVSQAVHDGGRHVLGVI 71 (213)
Q Consensus 41 ~~lv~GGg~~GlM~a~~~ga~~~gG~viGv~ 71 (213)
..++||.|. |+=.+.+..-.++|.+||.|.
T Consensus 9 ~vlvTgaga-GIG~~~v~~La~aGA~ViAva 38 (245)
T KOG1207|consen 9 IVLVTGAGA-GIGKEIVLSLAKAGAQVIAVA 38 (245)
T ss_pred EEEeecccc-cccHHHHHHHHhcCCEEEEEe
Confidence 457899996 999999999999999999983
No 343
>COG1010 CobJ Precorrin-3B methylase [Coenzyme metabolism]
Probab=21.58 E-value=5.6e+02 Score=22.49 Aligned_cols=113 Identities=27% Similarity=0.378 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHCCC--eEEEcCCCcChh--HHH-HHHHHhcC--CeEEEEeCCCCCCCC---CCCCCCc-e--eeecCC
Q 028138 27 EAAVELGKELVERKL--DLVYGGGSVGLM--GLV-SQAVHDGG--RHVLGVIPKTLTPRE---ITGDPVG-E--VKTVSD 93 (213)
Q Consensus 27 ~~A~~lG~~lA~~G~--~lv~GGg~~GlM--~a~-~~ga~~~g--G~viGv~P~~~~~~e---~~~~~~~-~--~~~~~~ 93 (213)
++|+ .+-.+|+.|+ .+|++|=+ |+- .++ .+-+.+.+ .-=+=|+|...-... .-..|+. + .+..++
T Consensus 60 ~Ra~-~AielA~~G~~ValVSsGDp-gVYgMA~lv~E~~~~~~~~~v~veVvPGvTA~~aaAa~lGAPL~hDF~~ISLSD 137 (249)
T COG1010 60 ERAK-EAIELAAEGRDVALVSSGDP-GVYGMAGLVLEAAEEEGWYDVDVEVVPGVTAALAAAARLGAPLGHDFCVISLSD 137 (249)
T ss_pred HHHH-HHHHHHhcCCeEEEEeCCCc-cHHHhHHHHHHHHHhcCCCCccEEEeCChHHHHHHHHHhCCCcccceEEEEhHh
Confidence 3443 4455666665 45788766 864 333 33333344 233566776431000 0011221 1 122222
Q ss_pred H------HHHHHHHHHhcCeEEEe--cCCCC---cHHHHHHHHHHHHhCCCCCceEEEecC
Q 028138 94 M------HQRKAEMARQADAFIAL--PGGYG---TLEELLEVITWAQLGIHRKPVGLLNVD 143 (213)
Q Consensus 94 ~------~~R~~~l~~~sDa~Ivl--pGG~G---TL~Ei~~~~~~~~lg~~~kPiill~~~ 143 (213)
. -++.......+|.+|+| |=+-+ -+.+.++++. ++.....||++...-
T Consensus 138 lLtPwe~IekRl~aAA~adfVi~~YNP~s~~R~~~~~~a~eil~--~~r~~~tpVgivrna 196 (249)
T COG1010 138 LLTPWEVIEKRLRAAAEADFVIALYNPISKRRPEQLGRAFEILR--EHRSPDTPVGIVRNA 196 (249)
T ss_pred cCCcHHHHHHHHHHHhhCCEEEEEECCccccchHHHHHHHHHHH--HhcCCCCcEEEEecC
Confidence 2 23444456789988887 55555 4455555543 444456899998653
No 344
>KOG0503 consensus Asparaginase [Amino acid transport and metabolism]
Probab=21.57 E-value=1.4e+02 Score=27.55 Aligned_cols=36 Identities=22% Similarity=0.319 Sum_probs=27.5
Q ss_pred hcCeEEEecCCCCcHHHHHHHHHHHHhCCCCCceEEEec
Q 028138 104 QADAFIALPGGYGTLEELLEVITWAQLGIHRKPVGLLNV 142 (213)
Q Consensus 104 ~sDa~IvlpGG~GTL~Ei~~~~~~~~lg~~~kPiill~~ 142 (213)
..|++||+.| .-||+|....+.++- . ..||||+.+.
T Consensus 121 ~~~G~VV~HG-TDTLe~tAffls~~~-~-t~KPIVitGa 156 (368)
T KOG0503|consen 121 SYDGIVVTHG-TDTLEETAFFLSFTI-N-TLKPIVITGA 156 (368)
T ss_pred ccCcEEEEcC-cchHHHHHHHHHHHH-h-cCCcEEEecc
Confidence 4789999875 789999998887653 2 2399998753
No 345
>cd03148 GATase1_EcHsp31_like Type 1 glutamine amidotransferase (GATase1)-like domain found in Escherichia coli Hsp31 protein (EcHsp31). Type 1 glutamine amidotransferase (GATase1)-like domain found in Escherichia coli Hsp31 protein (EcHsp31). This group includes proteins similar to EcHsp31. EcHsp31 has chaperone activity. EcHsp31 coordinates a metal ion using a 2-His-1-carboxylate motif present in various ions that use iron as a cofactor such as Carboxypeptidase A. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and, an Asp (rather than a Glu) residue form a different catalytic triad from the typical GATase1 domain. EcHsp31 is a homodimer.
Probab=21.47 E-value=74 Score=27.17 Aligned_cols=34 Identities=29% Similarity=0.241 Sum_probs=20.6
Q ss_pred eEEEecCCCCcHHHHHHHHHHHHh----CCCCCceEEE
Q 028138 107 AFIALPGGYGTLEELLEVITWAQL----GIHRKPVGLL 140 (213)
Q Consensus 107 a~IvlpGG~GTL~Ei~~~~~~~~l----g~~~kPiill 140 (213)
..|++|||.|++..+...-.+.++ ...+|||..+
T Consensus 98 Dav~iPGG~g~~~dl~~~~~l~~ll~~f~~~gK~VaAI 135 (232)
T cd03148 98 AAVFIPGGHGALIGIPESQDVAAALQWAIKNDRFVITL 135 (232)
T ss_pred eEEEECCCCCChhhcccCHHHHHHHHHHHHcCCEEEEE
Confidence 467899999998755432222221 2357888666
No 346
>cd06313 PBP1_ABC_sugar_binding_like_5 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=21.47 E-value=1.4e+02 Score=24.92 Aligned_cols=38 Identities=24% Similarity=0.189 Sum_probs=23.6
Q ss_pred HHHHhcCeEEEecCCCCcHHHHHHHHHHHHhCCCCCceEEEec
Q 028138 100 EMARQADAFIALPGGYGTLEELLEVITWAQLGIHRKPVGLLNV 142 (213)
Q Consensus 100 ~l~~~sDa~IvlpGG~GTL~Ei~~~~~~~~lg~~~kPiill~~ 142 (213)
++.+..|++|+.|.......++...+. ..+.|+++++.
T Consensus 51 ~~~~~vdgiii~~~~~~~~~~~i~~~~-----~~~iPvV~~~~ 88 (272)
T cd06313 51 MASQGWDFIAVDPLGIGTLTEAVQKAI-----ARGIPVIDMGT 88 (272)
T ss_pred HHHcCCCEEEEcCCChHHhHHHHHHHH-----HCCCcEEEeCC
Confidence 344568999998865544455543322 24679888864
No 347
>PRK06194 hypothetical protein; Provisional
Probab=21.39 E-value=4.9e+02 Score=21.75 Aligned_cols=31 Identities=13% Similarity=0.106 Sum_probs=21.3
Q ss_pred ceEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEcC
Q 028138 9 KRICVFCGSSSGKKATYQEAAVELGKELVERKLDLVYGG 47 (213)
Q Consensus 9 ~~I~V~ggs~~~~~~~~~~~A~~lG~~lA~~G~~lv~GG 47 (213)
++|-|.|+++. ..+.+.+.|+++|+.|+.-+
T Consensus 7 k~vlVtGasgg--------IG~~la~~l~~~G~~V~~~~ 37 (287)
T PRK06194 7 KVAVITGAASG--------FGLAFARIGAALGMKLVLAD 37 (287)
T ss_pred CEEEEeCCccH--------HHHHHHHHHHHCCCEEEEEe
Confidence 57888877642 34567777788999876433
No 348
>cd02190 epsilon_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The epsilon-tubulins which are widespread but not ubiquitous among eukaryotes play a role in basal body/centriole morphogenesis.
Probab=21.21 E-value=3.6e+02 Score=24.78 Aligned_cols=53 Identities=26% Similarity=0.384 Sum_probs=27.9
Q ss_pred CHHHHHHHHHHHHHHHH-----CCCeEEE--cCCC-cChhHHHHHHHHhc----CCeEEEEeCCC
Q 028138 22 KATYQEAAVELGKELVE-----RKLDLVY--GGGS-VGLMGLVSQAVHDG----GRHVLGVIPKT 74 (213)
Q Consensus 22 ~~~~~~~A~~lG~~lA~-----~G~~lv~--GGg~-~GlM~a~~~ga~~~----gG~viGv~P~~ 74 (213)
.+++.+...+.-|..++ .|+.++. |||. .|+---+.+-..+. .-.++.|.|..
T Consensus 78 g~~~~~~~~d~ir~~~E~cd~l~gf~i~~sl~GGTGSG~gs~l~e~l~~~y~~~~~~~~~v~P~~ 142 (379)
T cd02190 78 GHQYIDSILEKIRKAAEKCDSLQSFFILHSLGGGTGSGLGTYVLELLADEFPEVYRFVTSVYPSA 142 (379)
T ss_pred chhHHHHHHHHHHHHHhhCcCcceEEEEeecCCCcchhHHHHHHHHHHHhcCccceEEEeecCCC
Confidence 34555555555666666 3566653 3443 24444455544543 33456677754
No 349
>PRK09330 cell division protein FtsZ; Validated
Probab=21.20 E-value=5.1e+02 Score=24.07 Aligned_cols=54 Identities=19% Similarity=0.342 Sum_probs=31.5
Q ss_pred ChhHHHHHHHHhcCCeEEEEeCCCCCCCCCCCCCCceeeecCCHHHHHHHHHHhcCeEEEec
Q 028138 51 GLMGLVSQAVHDGGRHVLGVIPKTLTPREITGDPVGEVKTVSDMHQRKAEMARQADAFIALP 112 (213)
Q Consensus 51 GlM~a~~~ga~~~gG~viGv~P~~~~~~e~~~~~~~~~~~~~~~~~R~~~l~~~sDa~Ivlp 112 (213)
|.=-.+++-|++.|-.+++|.|..+. .|-.. +. ..=..-.+.|.+.+|.+|++|
T Consensus 114 GaapvIA~iake~g~ltvaVvt~PF~-fEG~~----r~---~nA~~gL~~L~~~~D~vIvi~ 167 (384)
T PRK09330 114 GAAPVVAEIAKELGILTVAVVTKPFS-FEGKK----RM---KQAEEGIEELRKHVDTLIVIP 167 (384)
T ss_pred HHHHHHHHHHHHcCCcEEEEEecCcc-ccchh----HH---HHHHHHHHHHHHHCCEEEEEe
Confidence 34447788899999999999874321 11100 00 000122344667888888887
No 350
>PRK05920 aromatic acid decarboxylase; Validated
Probab=21.16 E-value=1.8e+02 Score=24.58 Aligned_cols=81 Identities=20% Similarity=0.180 Sum_probs=50.4
Q ss_pred hcCeEEEecCCCCcHHHHHHHHHHH-------HhCCCCCceEEEecCccchH--HHHHHHHHHHcCCC-CccccCcEEEc
Q 028138 104 QADAFIALPGGYGTLEELLEVITWA-------QLGIHRKPVGLLNVDGFYNS--LLSFVDKAVDEGFI-SPTARRIIISA 173 (213)
Q Consensus 104 ~sDa~IvlpGG~GTL~Ei~~~~~~~-------~lg~~~kPiill~~~g~~~~--l~~~l~~~~~~g~i-~~~~~~~i~~~ 173 (213)
.+|++||.|=-.+|+.-+..=++-. ..-..++|+++.-.. .|.. -.+-++.+.+.|+. =+.....+.--
T Consensus 93 ~aD~~vVaPaTantlakiA~GiaD~ll~~~a~~~L~~~~pvvi~P~~-m~~~~~~~~nl~~L~~~G~~ii~P~~g~y~~p 171 (204)
T PRK05920 93 RTDGMVIAPCSMGTLAAIAHGLSDNLIERAADVVLKERRKLILVPRE-TPLSLIHLENMLKLAEAGAIILPAIPAFYHKP 171 (204)
T ss_pred ccCEEEEeeCCHhHHHHHHccccCcHHHHHHHHHHhcCCCEEEEeCC-CCCCHHHHHHHHHHHHCCCEEeCCcccccCCC
Confidence 6899999999999988775322100 111257899988543 5543 23345666666653 23344445566
Q ss_pred CCHHHHHHHHHh
Q 028138 174 PTAKKLVRQLEE 185 (213)
Q Consensus 174 ~~~ee~~~~l~~ 185 (213)
++.+|.++++..
T Consensus 172 ~~~~~~~~f~~~ 183 (204)
T PRK05920 172 QTIDDLVDFVVA 183 (204)
T ss_pred CCHHHHHHHHHH
Confidence 677898888754
No 351
>PRK00207 sulfur transfer complex subunit TusD; Validated
Probab=21.04 E-value=2.3e+02 Score=21.78 Aligned_cols=33 Identities=12% Similarity=0.202 Sum_probs=23.6
Q ss_pred eEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCeE
Q 028138 10 RICVFCGSSSGKKATYQEAAVELGKELVERKLDL 43 (213)
Q Consensus 10 ~I~V~ggs~~~~~~~~~~~A~~lG~~lA~~G~~l 43 (213)
+++|.--+.+ .+......|.++++.+++.|+.+
T Consensus 2 ~~~iv~~~~P-y~~~~~~~al~~A~aa~~~gh~v 34 (128)
T PRK00207 2 RYAIAVTGPA-YGTQQASSAYQFAQALLAEGHEL 34 (128)
T ss_pred EEEEEEcCCC-CCCHHHHHHHHHHHHHHhCCCCe
Confidence 4666544544 34556678999999999999974
No 352
>cd06300 PBP1_ABC_sugar_binding_like_1 Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily. Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their substrate specificity is not known in detail.
Probab=21.00 E-value=1.7e+02 Score=24.19 Aligned_cols=27 Identities=11% Similarity=-0.069 Sum_probs=14.6
Q ss_pred EEEEcCCCCCCCHHHHHHHHHHHHHHHHC
Q 028138 11 ICVFCGSSSGKKATYQEAAVELGKELVER 39 (213)
Q Consensus 11 I~V~ggs~~~~~~~~~~~A~~lG~~lA~~ 39 (213)
|+|.... ..++-+.+..+.+-+.+.+.
T Consensus 2 Ig~i~~~--~~~~~~~~~~~~i~~~~~~~ 28 (272)
T cd06300 2 IGLSNSY--AGNTWRAQMLDEFKAQAKEL 28 (272)
T ss_pred eEEeccc--cCChHHHHHHHHHHHHHHhh
Confidence 5555432 22555555666666666666
No 353
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=20.92 E-value=2.8e+02 Score=25.40 Aligned_cols=11 Identities=27% Similarity=0.558 Sum_probs=6.9
Q ss_pred HhcCeEEEecC
Q 028138 103 RQADAFIALPG 113 (213)
Q Consensus 103 ~~sDa~IvlpG 113 (213)
...|++|+-+|
T Consensus 67 ~~~d~vv~~~g 77 (450)
T PRK14106 67 EGVDLVVVSPG 77 (450)
T ss_pred hcCCEEEECCC
Confidence 45677666665
No 354
>cd03147 GATase1_Ydr533c_like Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein. Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein. This group includes proteins similar to S. cerevisiae Ydr533c. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. The catalytic triad typical of GATase1domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and Glu residue form a different catalytic triad from the typical GATase1domain. Ydr533c protein is a homodimer.
Probab=20.91 E-value=70 Score=27.28 Aligned_cols=34 Identities=18% Similarity=0.254 Sum_probs=20.1
Q ss_pred eEEEecCCCCcHHHHHHHHHHHHh----CCCCCceEEE
Q 028138 107 AFIALPGGYGTLEELLEVITWAQL----GIHRKPVGLL 140 (213)
Q Consensus 107 a~IvlpGG~GTL~Ei~~~~~~~~l----g~~~kPiill 140 (213)
-.|++|||.|.+..+..--.+.++ ...+|||..+
T Consensus 96 Dav~iPGG~g~~~dl~~~~~l~~ll~~f~~~gK~iaAI 133 (231)
T cd03147 96 GIFFVAGGHGTLFDFPHATNLQKIAQQIYANGGVVAAV 133 (231)
T ss_pred cEEEECCCCchhhhcccCHHHHHHHHHHHHcCCEEEEE
Confidence 367899999986655422222221 1357888776
No 355
>PRK12367 short chain dehydrogenase; Provisional
Probab=20.86 E-value=1.5e+02 Score=25.00 Aligned_cols=30 Identities=20% Similarity=0.274 Sum_probs=20.1
Q ss_pred CeEEEcCCCcChhHHHHHHHHhcCCeEEEEe
Q 028138 41 LDLVYGGGSVGLMGLVSQAVHDGGRHVLGVI 71 (213)
Q Consensus 41 ~~lv~GGg~~GlM~a~~~ga~~~gG~viGv~ 71 (213)
..|||||+. |+=.++++...+.|..++.+.
T Consensus 16 ~~lITGas~-gIG~ala~~l~~~G~~Vi~~~ 45 (245)
T PRK12367 16 RIGITGASG-ALGKALTKAFRAKGAKVIGLT 45 (245)
T ss_pred EEEEEcCCc-HHHHHHHHHHHHCCCEEEEEE
Confidence 456777764 777777777767777666653
No 356
>COG2921 Uncharacterized conserved protein [Function unknown]
Probab=20.84 E-value=81 Score=23.34 Aligned_cols=31 Identities=26% Similarity=0.573 Sum_probs=20.9
Q ss_pred HHHHHHHHhhcCCCcccccccccc--ccccccccc
Q 028138 177 KKLVRQLEEYVPEHDEITSKLVWE--DRLNYVSES 209 (213)
Q Consensus 177 ee~~~~l~~~~~~~~~~~~~~~w~--~~~~~~~~~ 209 (213)
+++++.++++.|. .-.++.+|. |.-+|.|.|
T Consensus 30 ~~vv~vvqr~ap~--~~~~~~~~k~SSkGnY~svs 62 (90)
T COG2921 30 DQVVEVVQRHAPG--DYTPRVSWKPSSKGNYLSVS 62 (90)
T ss_pred HHHHHHHHHHCCc--ccCceeeeccCCCCceEEEE
Confidence 4556666665444 467889998 667888765
No 357
>cd01411 SIR2H SIR2H: Uncharacterized prokaryotic Sir2 homologs from several gram positive bacterial species and Fusobacteria; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span.
Probab=20.84 E-value=1.3e+02 Score=25.52 Aligned_cols=44 Identities=11% Similarity=0.099 Sum_probs=26.8
Q ss_pred HHHHHHHHhcCeEEEecCCCCcHHHHHHHHHHHHhCCCCCceEEEecC
Q 028138 96 QRKAEMARQADAFIALPGGYGTLEELLEVITWAQLGIHRKPVGLLNVD 143 (213)
Q Consensus 96 ~R~~~l~~~sDa~IvlpGG~GTL~Ei~~~~~~~~lg~~~kPiill~~~ 143 (213)
.+....++.+|.+|++ ||--.+.-++.+.+.-.++.|++++|.+
T Consensus 163 ~~~~~~~~~~Dlllvi----GTSl~v~p~~~l~~~~~~~~~~i~iN~~ 206 (225)
T cd01411 163 EEAIQAIEKADLLVIV----GTSFVVYPFAGLIDYRQAGANLIAINKE 206 (225)
T ss_pred HHHHHHHhcCCEEEEE----CcCCeehhHHHHHHHHhCCCeEEEECCC
Confidence 4555566789977773 3543444444433322357899999975
No 358
>PLN03050 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional
Probab=20.83 E-value=1.7e+02 Score=25.35 Aligned_cols=30 Identities=13% Similarity=0.328 Sum_probs=19.9
Q ss_pred ceEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCeE
Q 028138 9 KRICVFCGSSSGKKATYQEAAVELGKELVERKLDL 43 (213)
Q Consensus 9 ~~I~V~ggs~~~~~~~~~~~A~~lG~~lA~~G~~l 43 (213)
++|.|+||+.+.-.+-+ -++|.|+++|+.+
T Consensus 61 ~~V~VlcG~GNNGGDGl-----v~AR~L~~~G~~V 90 (246)
T PLN03050 61 PRVLLVCGPGNNGGDGL-----VAARHLAHFGYEV 90 (246)
T ss_pred CeEEEEECCCCCchhHH-----HHHHHHHHCCCeE
Confidence 57889988865323443 4666777788865
No 359
>cd02191 FtsZ FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=20.79 E-value=6e+02 Score=22.53 Aligned_cols=59 Identities=19% Similarity=0.337 Sum_probs=33.0
Q ss_pred cCCC-cChhHHHHHHHHhcCCeEEEEeCCCCCCCCCCCCCCceeeecCCHHHHHHHHHHhcCeEEEec
Q 028138 46 GGGS-VGLMGLVSQAVHDGGRHVLGVIPKTLTPREITGDPVGEVKTVSDMHQRKAEMARQADAFIALP 112 (213)
Q Consensus 46 GGg~-~GlM~a~~~ga~~~gG~viGv~P~~~~~~e~~~~~~~~~~~~~~~~~R~~~l~~~sDa~Ivlp 112 (213)
|||. .|.=-.+++-+++.+..+++|.|..+.. |....++ .=....+.|.+.+|.+|+++
T Consensus 95 GGGTGSG~ap~ia~~~ke~~~~~~~vvt~Pf~~-Eg~~~~~-------NA~~~l~~L~~~~D~~iv~d 154 (303)
T cd02191 95 GGGTGTGGAPVVAEHLKRIGTLTVAVVTLPFSD-EGGIRML-------NAAEGFQTLVREVDNLMVIP 154 (303)
T ss_pred CCccchhHHHHHHHHHHHhCCCEEEEEeCCccc-CCccchh-------hHHHHHHHHHHhCCEEEEEe
Confidence 5543 2455666788888888999997654321 1110111 11123344566777777776
No 360
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=20.75 E-value=2.3e+02 Score=24.63 Aligned_cols=17 Identities=6% Similarity=0.001 Sum_probs=13.8
Q ss_pred EEcCCHHHHHHHHHhhc
Q 028138 171 ISAPTAKKLVRQLEEYV 187 (213)
Q Consensus 171 ~~~~~~ee~~~~l~~~~ 187 (213)
..++|++|+++++++..
T Consensus 239 ~~~~~~~el~~~l~~~~ 255 (256)
T TIGR00715 239 AIFDDISQLNQFVARLL 255 (256)
T ss_pred ccCCCHHHHHHHHHHhc
Confidence 56799999999998753
No 361
>PRK08339 short chain dehydrogenase; Provisional
Probab=20.73 E-value=1.5e+02 Score=24.98 Aligned_cols=30 Identities=17% Similarity=0.179 Sum_probs=17.8
Q ss_pred ceEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEc
Q 028138 9 KRICVFCGSSSGKKATYQEAAVELGKELVERKLDLVYG 46 (213)
Q Consensus 9 ~~I~V~ggs~~~~~~~~~~~A~~lG~~lA~~G~~lv~G 46 (213)
+.+-|.|+++ + ..+.+++.|+++|+.|+.-
T Consensus 9 k~~lItGas~-g-------IG~aia~~l~~~G~~V~~~ 38 (263)
T PRK08339 9 KLAFTTASSK-G-------IGFGVARVLARAGADVILL 38 (263)
T ss_pred CEEEEeCCCC-c-------HHHHHHHHHHHCCCEEEEE
Confidence 3555665543 2 3456677777788876643
No 362
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=20.65 E-value=2.5e+02 Score=22.98 Aligned_cols=35 Identities=26% Similarity=0.390 Sum_probs=22.7
Q ss_pred HHHhcCeEEEec--CCCCcHHHHHHHHHHHHhCCCCCceEEEecC
Q 028138 101 MARQADAFIALP--GGYGTLEELLEVITWAQLGIHRKPVGLLNVD 143 (213)
Q Consensus 101 l~~~sDa~Ivlp--GG~GTL~Ei~~~~~~~~lg~~~kPiill~~~ 143 (213)
+...||++|.-. .|.|+ =+.|++. .++||+..+..
T Consensus 260 ~~~~~d~~i~ps~~e~~~~--~~~Ea~~------~G~PvI~~~~~ 296 (353)
T cd03811 260 YLKAADLFVLSSRYEGFPN--VLLEAMA------LGTPVVATDCP 296 (353)
T ss_pred HHHhCCEEEeCcccCCCCc--HHHHHHH------hCCCEEEcCCC
Confidence 567899887543 23443 2556664 47999987764
No 363
>PRK09291 short chain dehydrogenase; Provisional
Probab=20.65 E-value=1.6e+02 Score=24.20 Aligned_cols=31 Identities=19% Similarity=0.224 Sum_probs=21.8
Q ss_pred ceEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEcC
Q 028138 9 KRICVFCGSSSGKKATYQEAAVELGKELVERKLDLVYGG 47 (213)
Q Consensus 9 ~~I~V~ggs~~~~~~~~~~~A~~lG~~lA~~G~~lv~GG 47 (213)
++|.|.|+++. ..+.+.+.|+++|+.++...
T Consensus 3 ~~vlVtGasg~--------iG~~ia~~l~~~G~~v~~~~ 33 (257)
T PRK09291 3 KTILITGAGSG--------FGREVALRLARKGHNVIAGV 33 (257)
T ss_pred CEEEEeCCCCH--------HHHHHHHHHHHCCCEEEEEe
Confidence 46888877642 45667777888999887544
No 364
>PRK10834 vancomycin high temperature exclusion protein; Provisional
Probab=20.59 E-value=3.4e+02 Score=23.55 Aligned_cols=9 Identities=22% Similarity=0.626 Sum_probs=4.3
Q ss_pred EEEecCCCC
Q 028138 108 FIALPGGYG 116 (213)
Q Consensus 108 ~IvlpGG~G 116 (213)
.|++.||.+
T Consensus 84 ~ilvSGg~~ 92 (239)
T PRK10834 84 YLLLSGDNA 92 (239)
T ss_pred EEEEeCCCC
Confidence 445555543
No 365
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=20.57 E-value=2.6e+02 Score=24.29 Aligned_cols=42 Identities=24% Similarity=0.457 Sum_probs=25.1
Q ss_pred cHHHHHHHHHHHHhCCCCCceEEEecCccchHH-----HHHHHHHHHcCC
Q 028138 117 TLEELLEVITWAQLGIHRKPVGLLNVDGFYNSL-----LSFVDKAVDEGF 161 (213)
Q Consensus 117 TL~Ei~~~~~~~~lg~~~kPiill~~~g~~~~l-----~~~l~~~~~~g~ 161 (213)
|++++++.+.-.+-...+.|++++. ||+++ .+|++.+.+.|.
T Consensus 72 ~~~~~~~~~~~~r~~~~~~p~vlm~---Y~N~i~~~G~e~f~~~~~~aGv 118 (258)
T PRK13111 72 TLADVFELVREIREKDPTIPIVLMT---YYNPIFQYGVERFAADAAEAGV 118 (258)
T ss_pred CHHHHHHHHHHHHhcCCCCCEEEEe---cccHHhhcCHHHHHHHHHHcCC
Confidence 5666776654222123468998774 66654 446777776664
No 366
>PRK08589 short chain dehydrogenase; Validated
Probab=20.37 E-value=1.5e+02 Score=25.03 Aligned_cols=53 Identities=8% Similarity=-0.002 Sum_probs=30.2
Q ss_pred ceEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEcCCCcChhHHHHHHHHhcCCeEEEE
Q 028138 9 KRICVFCGSSSGKKATYQEAAVELGKELVERKLDLVYGGGSVGLMGLVSQAVHDGGRHVLGV 70 (213)
Q Consensus 9 ~~I~V~ggs~~~~~~~~~~~A~~lG~~lA~~G~~lv~GGg~~GlM~a~~~ga~~~gG~viGv 70 (213)
+++-|.|+++. ..+.+++.|+++|+.|+.-+-. ---+...+...+.++.+..+
T Consensus 7 k~vlItGas~g--------IG~aia~~l~~~G~~vi~~~r~-~~~~~~~~~~~~~~~~~~~~ 59 (272)
T PRK08589 7 KVAVITGASTG--------IGQASAIALAQEGAYVLAVDIA-EAVSETVDKIKSNGGKAKAY 59 (272)
T ss_pred CEEEEECCCch--------HHHHHHHHHHHCCCEEEEEeCc-HHHHHHHHHHHhcCCeEEEE
Confidence 46777766642 4567888888899998765432 11122222233345555555
No 367
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=20.37 E-value=5.7e+02 Score=22.57 Aligned_cols=66 Identities=11% Similarity=0.022 Sum_probs=40.5
Q ss_pred ceEEEEcCCCCCC---CHHHHHHHHHHHHHHHHCCCeEEEcCCCcChhHHHH--HHHHhcCCeEEEEeCCCC
Q 028138 9 KRICVFCGSSSGK---KATYQEAAVELGKELVERKLDLVYGGGSVGLMGLVS--QAVHDGGRHVLGVIPKTL 75 (213)
Q Consensus 9 ~~I~V~ggs~~~~---~~~~~~~A~~lG~~lA~~G~~lv~GGg~~GlM~a~~--~ga~~~gG~viGv~P~~~ 75 (213)
.-|.|.|++.... .++..+..+...+. +.....|+.|-+..+.-+++. +-|.+.|-.-+-++|..+
T Consensus 44 ~Gi~v~GstGE~~~Lt~eEr~~v~~~~~~~-~~grvpvi~Gv~~~~t~~ai~~a~~A~~~Gad~vlv~~P~y 114 (309)
T cd00952 44 DGILTMGTFGECATLTWEEKQAFVATVVET-VAGRVPVFVGATTLNTRDTIARTRALLDLGADGTMLGRPMW 114 (309)
T ss_pred CEEEECcccccchhCCHHHHHHHHHHHHHH-hCCCCCEEEEeccCCHHHHHHHHHHHHHhCCCEEEECCCcC
Confidence 3466666555432 34555444444443 345578888887657777664 557778888777776554
No 368
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=20.33 E-value=2.2e+02 Score=25.24 Aligned_cols=52 Identities=19% Similarity=0.272 Sum_probs=32.7
Q ss_pred hcCeEEEecCCCCcHHHHHHHHHHHHhCCCCCceEEEecC--ccch-----HHHHHHHHHHHcCC
Q 028138 104 QADAFIALPGGYGTLEELLEVITWAQLGIHRKPVGLLNVD--GFYN-----SLLSFVDKAVDEGF 161 (213)
Q Consensus 104 ~sDa~IvlpGG~GTL~Ei~~~~~~~~lg~~~kPiill~~~--g~~~-----~l~~~l~~~~~~g~ 161 (213)
.+|.+|+ -||=||+.+....+. ..++|++-+|.+ ||.. .+.+.++++.+..|
T Consensus 63 ~~d~vi~-~GGDGt~l~~~~~~~-----~~~~pilGIn~G~lGFL~~~~~~~~~~~l~~~~~g~~ 121 (291)
T PRK02155 63 RADLAVV-LGGDGTMLGIGRQLA-----PYGVPLIGINHGRLGFITDIPLDDMQETLPPMLAGNY 121 (291)
T ss_pred CCCEEEE-ECCcHHHHHHHHHhc-----CCCCCEEEEcCCCccccccCCHHHHHHHHHHHHcCCc
Confidence 4566555 578999988876542 246898877764 4543 45556666655444
No 369
>KOG3974 consensus Predicted sugar kinase [Carbohydrate transport and metabolism]
Probab=20.25 E-value=6.4e+02 Score=22.65 Aligned_cols=47 Identities=17% Similarity=0.370 Sum_probs=30.3
Q ss_pred HHHHHHHhcCeEEEecCC---CCcHHHHHHHHHHHHhCCCCCceEEEecCccc
Q 028138 97 RKAEMARQADAFIALPGG---YGTLEELLEVITWAQLGIHRKPVGLLNVDGFY 146 (213)
Q Consensus 97 R~~~l~~~sDa~IvlpGG---~GTL~Ei~~~~~~~~lg~~~kPiill~~~g~~ 146 (213)
+-..++..=+|+|+=||= -+++-++..++.+.. ..++|+|+ +.+|.|
T Consensus 94 ~i~k~L~RlhavVIGPGLGRdp~~~k~i~~iley~~--~~dvP~VI-DaDGL~ 143 (306)
T KOG3974|consen 94 IIEKLLQRLHAVVIGPGLGRDPAILKEIAKILEYLR--GKDVPLVI-DADGLW 143 (306)
T ss_pred HHHHHHhheeEEEECCCCCCCHHHHHHHHHHHHHHh--cCCCcEEE-cCCceE
Confidence 344466778888887762 356666666665432 24689765 778888
No 370
>PRK00414 gmhA phosphoheptose isomerase; Reviewed
Probab=20.09 E-value=3.9e+02 Score=21.82 Aligned_cols=28 Identities=25% Similarity=0.243 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHCCCeEEEcCCCc
Q 028138 23 ATYQEAAVELGKELVERKLDLVYGGGSV 50 (213)
Q Consensus 23 ~~~~~~A~~lG~~lA~~G~~lv~GGg~~ 50 (213)
+...+.++.+.+.+.+.+...++|-|..
T Consensus 28 ~~i~~a~~~i~~al~~~~rI~i~G~G~S 55 (192)
T PRK00414 28 HAIQRAAVLIADSFKAGGKVLSCGNGGS 55 (192)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEeCcHH
Confidence 4566666666666666799999998753
No 371
>COG0787 Alr Alanine racemase [Cell envelope biogenesis, outer membrane]
Probab=20.06 E-value=3.6e+02 Score=24.85 Aligned_cols=64 Identities=23% Similarity=0.303 Sum_probs=37.7
Q ss_pred hcCeEEEecCCCCcHHHHHHHHHHHHhCCCCCceEEEecCccchHHHHHHHHHHHcCCCCccccCcEEEcCCHHHHHHHH
Q 028138 104 QADAFIALPGGYGTLEELLEVITWAQLGIHRKPVGLLNVDGFYNSLLSFVDKAVDEGFISPTARRIIISAPTAKKLVRQL 183 (213)
Q Consensus 104 ~sDa~IvlpGG~GTL~Ei~~~~~~~~lg~~~kPiill~~~g~~~~l~~~l~~~~~~g~i~~~~~~~i~~~~~~ee~~~~l 183 (213)
-+|.|=| -|++|. +++.+.|..+.||.+++ |+|.+-.. +...+ .++...+.|.+.+-.+.
T Consensus 54 g~~~f~V-----A~l~EA---i~LR~~gi~~~~IlvL~--g~~~~~~~--~~~~~--------~~l~~~v~s~~ql~~l~ 113 (360)
T COG0787 54 GADGFGV-----ASLEEA---IELREAGITGAPILVLE--GFFPAEEL--ELAAA--------YNLTPVVNSLEQLEALK 113 (360)
T ss_pred CCCEEEE-----CcHHHH---HHHHHcCCCCCCEEEEc--CcCChhhH--HHHHH--------cCCeEEECCHHHHHHHH
Confidence 3787744 467765 56677777557999986 46655332 11222 23345677777766655
Q ss_pred Hhhc
Q 028138 184 EEYV 187 (213)
Q Consensus 184 ~~~~ 187 (213)
....
T Consensus 114 ~~~~ 117 (360)
T COG0787 114 NAAL 117 (360)
T ss_pred Hhhh
Confidence 5433
No 372
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=20.04 E-value=1.6e+02 Score=23.98 Aligned_cols=28 Identities=14% Similarity=0.229 Sum_probs=16.0
Q ss_pred eEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCeEEE
Q 028138 10 RICVFCGSSSGKKATYQEAAVELGKELVERKLDLVY 45 (213)
Q Consensus 10 ~I~V~ggs~~~~~~~~~~~A~~lG~~lA~~G~~lv~ 45 (213)
++.|.|+++. ....+.+.++++|+.++.
T Consensus 7 ~~lItG~~g~--------iG~~~a~~l~~~G~~vi~ 34 (253)
T PRK08217 7 VIVITGGAQG--------LGRAMAEYLAQKGAKLAL 34 (253)
T ss_pred EEEEECCCch--------HHHHHHHHHHHCCCEEEE
Confidence 5666655432 234566666667776554
No 373
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=20.01 E-value=7.4e+02 Score=23.30 Aligned_cols=54 Identities=17% Similarity=0.166 Sum_probs=41.1
Q ss_pred CHHHHHHHHHHHHHHHHCCCeE---EEcCCCcChhHHHHHHHHhcCCeEEEEeCCCC
Q 028138 22 KATYQEAAVELGKELVERKLDL---VYGGGSVGLMGLVSQAVHDGGRHVLGVIPKTL 75 (213)
Q Consensus 22 ~~~~~~~A~~lG~~lA~~G~~l---v~GGg~~GlM~a~~~ga~~~gG~viGv~P~~~ 75 (213)
++.....+.+|-..+-++--.| |||+|.+=+|=.+.+-|+..||++.=..|..+
T Consensus 99 s~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEMif~~i~~al~~G~~vciASPRvD 155 (441)
T COG4098 99 SPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEMIFQGIEQALNQGGRVCIASPRVD 155 (441)
T ss_pred ChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhhhHHHHHHHHhcCCeEEEecCccc
Confidence 4555556677778887765555 79999988999999999999998665566543
Done!