Query 028139
Match_columns 213
No_of_seqs 220 out of 1961
Neff 7.6
Searched_HMMs 29240
Date Mon Mar 25 10:54:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028139.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028139hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1iym_A EL5; ring-H2 finger, ub 99.7 4.4E-17 1.5E-21 105.4 4.8 51 156-206 3-54 (55)
2 2kiz_A E3 ubiquitin-protein li 99.7 9.6E-17 3.3E-21 108.6 6.6 55 156-210 12-66 (69)
3 2ep4_A Ring finger protein 24; 99.6 2.1E-16 7.2E-21 108.3 6.3 54 156-209 13-66 (74)
4 1x4j_A Ring finger protein 38; 99.6 7.7E-17 2.6E-21 111.0 4.1 53 156-208 21-73 (75)
5 2ect_A Ring finger protein 126 99.6 2.1E-16 7E-21 109.5 5.5 55 156-210 13-67 (78)
6 2l0b_A E3 ubiquitin-protein li 99.6 2.4E-16 8.2E-21 112.7 4.8 52 156-207 38-89 (91)
7 2ecl_A Ring-box protein 2; RNF 99.6 2.9E-16 9.8E-21 110.0 4.3 53 156-208 13-77 (81)
8 2ecm_A Ring finger and CHY zin 99.6 7.5E-16 2.5E-20 99.5 5.1 51 156-206 3-54 (55)
9 2djb_A Polycomb group ring fin 99.6 2.3E-15 8E-20 102.7 6.0 55 156-212 13-67 (72)
10 3ng2_A RNF4, snurf, ring finge 99.6 1.5E-15 5.2E-20 103.0 4.4 55 156-210 8-66 (71)
11 2ea6_A Ring finger protein 4; 99.6 2.5E-15 8.6E-20 101.1 4.9 52 156-207 13-68 (69)
12 3dpl_R Ring-box protein 1; ubi 99.6 2.6E-15 8.8E-20 110.5 5.0 53 156-208 35-102 (106)
13 2xeu_A Ring finger protein 4; 99.5 3.5E-15 1.2E-19 98.9 3.6 53 157-209 2-58 (64)
14 2d8s_A Cellular modulator of i 99.5 6.8E-15 2.3E-19 102.9 5.0 53 156-209 13-72 (80)
15 1v87_A Deltex protein 2; ring- 99.5 1.2E-14 4.2E-19 107.5 5.6 52 157-208 24-95 (114)
16 2d8t_A Dactylidin, ring finger 99.5 8.3E-15 2.8E-19 99.7 4.0 50 156-208 13-62 (71)
17 2ecn_A Ring finger protein 141 99.5 5.6E-15 1.9E-19 100.1 2.9 50 156-209 13-62 (70)
18 1chc_A Equine herpes virus-1 r 99.5 1.3E-14 4.5E-19 97.6 4.7 49 156-206 3-51 (68)
19 2ct2_A Tripartite motif protei 99.5 3.8E-14 1.3E-18 99.8 6.6 54 156-209 13-70 (88)
20 2yur_A Retinoblastoma-binding 99.5 3.9E-14 1.3E-18 97.2 5.6 51 156-209 13-66 (74)
21 2ysl_A Tripartite motif-contai 99.5 4.5E-14 1.6E-18 96.2 5.8 51 156-209 18-71 (73)
22 4a0k_B E3 ubiquitin-protein li 99.5 4.1E-15 1.4E-19 111.2 0.4 53 156-208 46-113 (117)
23 2ecy_A TNF receptor-associated 99.5 4.1E-14 1.4E-18 94.8 4.6 52 156-210 13-65 (66)
24 4ayc_A E3 ubiquitin-protein li 99.5 1.9E-14 6.6E-19 110.3 3.3 49 156-207 51-99 (138)
25 2csy_A Zinc finger protein 183 99.5 5.7E-14 1.9E-18 97.9 5.3 48 156-206 13-60 (81)
26 1t1h_A Gspef-atpub14, armadill 99.4 2E-13 6.8E-18 94.3 5.6 51 156-209 6-57 (78)
27 3lrq_A E3 ubiquitin-protein li 99.4 6E-14 2.1E-18 101.8 3.1 52 156-209 20-72 (100)
28 2ecw_A Tripartite motif-contai 99.4 3.2E-13 1.1E-17 94.1 5.5 51 156-209 17-73 (85)
29 2ysj_A Tripartite motif-contai 99.4 3.9E-13 1.3E-17 89.1 5.4 43 156-201 18-63 (63)
30 2ecv_A Tripartite motif-contai 99.4 4.1E-13 1.4E-17 93.6 5.0 51 156-209 17-73 (85)
31 2ct0_A Non-SMC element 1 homol 99.4 4E-13 1.4E-17 92.4 4.7 53 156-210 13-67 (74)
32 3ztg_A E3 ubiquitin-protein li 99.4 5.9E-13 2E-17 94.7 5.7 48 156-206 11-61 (92)
33 2egp_A Tripartite motif-contai 99.4 9.3E-14 3.2E-18 95.9 1.3 51 156-209 10-67 (79)
34 4ap4_A E3 ubiquitin ligase RNF 99.4 2.6E-13 9E-18 102.1 3.9 54 156-209 5-62 (133)
35 1g25_A CDK-activating kinase a 99.4 6.1E-13 2.1E-17 88.7 5.1 53 157-209 2-57 (65)
36 2ckl_A Polycomb group ring fin 99.4 4.1E-13 1.4E-17 98.5 4.6 51 156-208 13-63 (108)
37 2y43_A E3 ubiquitin-protein li 99.4 2.8E-13 9.7E-18 97.8 3.7 50 157-208 21-70 (99)
38 3fl2_A E3 ubiquitin-protein li 99.3 6.9E-13 2.4E-17 99.6 4.6 49 156-207 50-99 (124)
39 2ecj_A Tripartite motif-contai 99.3 7.1E-13 2.4E-17 86.1 3.7 43 156-201 13-58 (58)
40 4ap4_A E3 ubiquitin ligase RNF 99.3 1.1E-12 3.7E-17 98.7 3.9 55 155-209 69-127 (133)
41 1jm7_A BRCA1, breast cancer ty 99.3 1.1E-12 3.9E-17 96.3 3.1 50 157-209 20-72 (112)
42 3hct_A TNF receptor-associated 99.3 1.9E-12 6.3E-17 96.6 4.0 51 156-209 16-67 (118)
43 1z6u_A NP95-like ring finger p 99.3 2.4E-12 8.2E-17 100.1 4.6 50 156-208 76-126 (150)
44 1rmd_A RAG1; V(D)J recombinati 99.2 2.4E-12 8.1E-17 95.5 3.3 50 157-209 22-72 (116)
45 2kr4_A Ubiquitin conjugation f 99.2 5.3E-12 1.8E-16 89.0 4.9 51 156-209 12-62 (85)
46 3l11_A E3 ubiquitin-protein li 99.2 8.3E-13 2.8E-17 97.9 0.5 48 156-206 13-61 (115)
47 2ckl_B Ubiquitin ligase protei 99.2 4.1E-12 1.4E-16 99.9 4.0 49 157-207 53-102 (165)
48 3knv_A TNF receptor-associated 99.2 5.2E-12 1.8E-16 97.3 3.9 51 156-209 29-80 (141)
49 1e4u_A Transcriptional repress 99.2 9.4E-12 3.2E-16 86.4 4.7 54 156-209 9-64 (78)
50 1wgm_A Ubiquitin conjugation f 99.2 1.3E-11 4.4E-16 89.4 5.4 52 156-210 20-72 (98)
51 2vje_A E3 ubiquitin-protein li 99.2 9.6E-12 3.3E-16 83.0 4.0 48 156-206 6-56 (64)
52 2kre_A Ubiquitin conjugation f 99.2 1.4E-11 4.6E-16 89.6 5.0 51 156-209 27-77 (100)
53 1bor_A Transcription factor PM 99.2 2.6E-12 8.7E-17 83.5 1.0 48 156-209 4-51 (56)
54 2vje_B MDM4 protein; proto-onc 99.1 3.1E-11 1.1E-15 80.3 4.0 48 156-206 5-55 (63)
55 1jm7_B BARD1, BRCA1-associated 99.1 9.9E-12 3.4E-16 92.4 1.2 49 156-209 20-69 (117)
56 2y1n_A E3 ubiquitin-protein li 99.1 5.3E-11 1.8E-15 105.3 4.5 49 158-209 332-381 (389)
57 4ic3_A E3 ubiquitin-protein li 99.1 2E-11 6.7E-16 83.7 1.3 44 157-207 23-67 (74)
58 2yu4_A E3 SUMO-protein ligase 99.0 6.7E-11 2.3E-15 84.8 2.9 49 156-207 5-63 (94)
59 3hcs_A TNF receptor-associated 99.0 8.4E-11 2.9E-15 92.7 3.7 51 156-209 16-67 (170)
60 2c2l_A CHIP, carboxy terminus 99.0 2.6E-10 9E-15 95.7 4.3 51 156-209 206-257 (281)
61 1vyx_A ORF K3, K3RING; zinc-bi 98.9 6E-10 2.1E-14 73.4 4.1 49 156-207 4-59 (60)
62 3k1l_B Fancl; UBC, ring, RWD, 98.9 2E-10 6.9E-15 99.5 1.6 51 156-206 306-372 (381)
63 2ecg_A Baculoviral IAP repeat- 98.9 3E-10 1E-14 77.8 1.7 44 158-208 25-69 (75)
64 2ea5_A Cell growth regulator w 98.9 1.5E-09 5.3E-14 73.1 4.2 45 156-207 13-58 (68)
65 2f42_A STIP1 homology and U-bo 98.9 1.2E-09 4E-14 87.2 4.1 51 156-209 104-155 (179)
66 2bay_A PRE-mRNA splicing facto 98.8 1.8E-09 6.1E-14 71.3 2.9 49 159-210 4-53 (61)
67 2yho_A E3 ubiquitin-protein li 98.8 6.8E-10 2.3E-14 77.1 0.9 43 157-206 17-60 (79)
68 1wim_A KIAA0161 protein; ring 98.8 2.3E-09 7.7E-14 76.5 3.3 48 157-204 4-61 (94)
69 3htk_C E3 SUMO-protein ligase 98.7 3.4E-09 1.2E-13 88.9 3.3 52 156-209 179-234 (267)
70 3t6p_A Baculoviral IAP repeat- 98.6 6.9E-09 2.3E-13 90.8 1.7 44 156-206 293-337 (345)
71 3vk6_A E3 ubiquitin-protein li 98.2 1E-06 3.5E-11 63.1 4.0 45 160-206 3-48 (101)
72 3nw0_A Non-structural maintena 98.1 2.8E-06 9.7E-11 70.5 5.5 52 157-210 179-232 (238)
73 2ko5_A Ring finger protein Z; 97.4 6.6E-05 2.3E-09 52.9 1.9 48 157-209 27-75 (99)
74 2jun_A Midline-1; B-BOX, TRIM, 96.4 0.0018 6E-08 46.0 3.0 35 158-192 3-38 (101)
75 2lri_C Autoimmune regulator; Z 94.3 0.041 1.4E-06 36.2 3.6 46 157-205 11-60 (66)
76 2ysm_A Myeloid/lymphoid or mix 93.0 0.034 1.2E-06 40.1 1.6 39 155-193 4-42 (111)
77 1f62_A Transcription factor WS 90.9 0.13 4.4E-06 31.6 2.2 44 160-203 2-49 (51)
78 2l5u_A Chromodomain-helicase-D 90.5 0.12 4.2E-06 33.2 1.9 46 156-204 9-58 (61)
79 2yql_A PHD finger protein 21A; 89.8 0.045 1.5E-06 34.6 -0.6 46 155-203 6-55 (56)
80 2k16_A Transcription initiatio 89.6 0.074 2.5E-06 35.5 0.3 51 156-206 16-70 (75)
81 1xwh_A Autoimmune regulator; P 89.6 0.086 2.9E-06 34.5 0.6 48 156-206 6-57 (66)
82 1mm2_A MI2-beta; PHD, zinc fin 89.4 0.073 2.5E-06 34.3 0.2 47 156-205 7-57 (61)
83 1wil_A KIAA1045 protein; ring 89.0 0.28 9.7E-06 33.7 2.9 34 157-191 14-47 (89)
84 3m62_A Ubiquitin conjugation f 88.6 0.34 1.2E-05 47.2 4.2 51 156-209 889-940 (968)
85 2puy_A PHD finger protein 21A; 88.5 0.055 1.9E-06 34.7 -1.0 48 156-206 3-54 (60)
86 1we9_A PHD finger family prote 87.9 0.11 3.8E-06 33.5 0.2 50 155-204 3-58 (64)
87 1fp0_A KAP-1 corepressor; PHD 87.8 0.34 1.2E-05 33.6 2.7 51 155-208 22-76 (88)
88 2e6r_A Jumonji/ARID domain-con 87.2 0.055 1.9E-06 37.9 -1.7 49 156-204 14-66 (92)
89 3v43_A Histone acetyltransfera 84.6 1.7 5.7E-05 31.2 5.2 32 158-189 5-42 (112)
90 2yt5_A Metal-response element- 84.2 0.44 1.5E-05 30.7 1.7 51 156-206 4-63 (66)
91 2lbm_A Transcriptional regulat 84.1 1.4 4.6E-05 33.3 4.6 48 154-204 59-117 (142)
92 2cs3_A Protein C14ORF4, MY039 82.5 0.72 2.5E-05 31.4 2.2 38 157-194 14-52 (93)
93 3i2d_A E3 SUMO-protein ligase 82.3 0.95 3.3E-05 39.5 3.5 48 160-209 251-302 (371)
94 1joc_A EEA1, early endosomal a 81.8 1.6 5.4E-05 32.1 4.1 41 151-191 62-103 (125)
95 4fo9_A E3 SUMO-protein ligase 81.6 1.2 4.2E-05 38.6 4.0 48 160-209 217-268 (360)
96 2l43_A N-teminal domain from h 80.7 0.26 8.9E-06 34.1 -0.5 52 156-207 23-78 (88)
97 2e6s_A E3 ubiquitin-protein li 79.7 0.32 1.1E-05 32.8 -0.3 44 160-203 28-76 (77)
98 3t7l_A Zinc finger FYVE domain 78.9 1.9 6.6E-05 29.6 3.6 39 154-192 16-55 (90)
99 3v43_A Histone acetyltransfera 78.4 0.71 2.4E-05 33.2 1.2 44 160-203 63-111 (112)
100 2ku3_A Bromodomain-containing 78.2 2 6.7E-05 28.4 3.3 49 155-203 13-65 (71)
101 3asl_A E3 ubiquitin-protein li 78.1 0.34 1.2E-05 32.0 -0.5 44 160-203 20-68 (70)
102 1z2q_A LM5-1; membrane protein 78.0 2.3 7.8E-05 28.8 3.7 38 154-191 17-55 (84)
103 2yw8_A RUN and FYVE domain-con 76.6 2 6.8E-05 29.0 3.0 38 154-191 15-53 (82)
104 1z60_A TFIIH basal transcripti 74.8 0.72 2.4E-05 29.5 0.3 43 159-201 16-58 (59)
105 1zbd_B Rabphilin-3A; G protein 74.4 1.6 5.5E-05 32.5 2.3 34 156-189 53-88 (134)
106 1x4u_A Zinc finger, FYVE domai 74.4 2.9 9.9E-05 28.3 3.4 38 154-191 10-48 (84)
107 3ql9_A Transcriptional regulat 74.1 3.1 0.00011 30.8 3.8 47 155-204 54-111 (129)
108 1wfk_A Zinc finger, FYVE domai 73.7 2.9 9.8E-05 28.7 3.3 37 155-191 6-43 (88)
109 2vpb_A Hpygo1, pygopus homolog 73.3 3.4 0.00012 26.7 3.4 34 156-189 6-41 (65)
110 2lv9_A Histone-lysine N-methyl 72.9 1.2 4E-05 31.3 1.1 45 158-203 28-75 (98)
111 3ask_A E3 ubiquitin-protein li 71.8 0.94 3.2E-05 36.8 0.4 44 160-203 176-224 (226)
112 1y02_A CARP2, FYVE-ring finger 71.1 0.64 2.2E-05 34.1 -0.7 48 156-203 17-65 (120)
113 2zet_C Melanophilin; complex, 70.5 2.8 9.7E-05 31.9 2.9 46 157-203 67-116 (153)
114 2d8v_A Zinc finger FYVE domain 69.9 4.1 0.00014 26.5 3.1 33 156-192 6-39 (67)
115 1wep_A PHF8; structural genomi 69.0 3.1 0.00011 27.7 2.5 48 156-204 10-63 (79)
116 1wev_A Riken cDNA 1110020M19; 68.5 1.5 5.2E-05 30.1 0.9 49 157-205 15-73 (88)
117 3mjh_B Early endosome antigen 66.8 1.4 4.7E-05 25.0 0.3 15 156-170 3-17 (34)
118 1wen_A Inhibitor of growth fam 66.0 2.4 8.1E-05 27.9 1.4 45 157-205 15-66 (71)
119 2gmg_A Hypothetical protein PF 65.1 1.3 4.4E-05 31.7 -0.1 30 175-209 69-98 (105)
120 2kwj_A Zinc finger protein DPF 64.8 3.6 0.00012 29.5 2.3 33 159-191 2-41 (114)
121 3shb_A E3 ubiquitin-protein li 64.2 0.99 3.4E-05 30.4 -0.8 44 160-203 28-76 (77)
122 1vfy_A Phosphatidylinositol-3- 62.5 6.4 0.00022 25.7 3.1 33 159-191 12-45 (73)
123 1wem_A Death associated transc 61.5 7.2 0.00025 25.6 3.2 47 157-204 15-70 (76)
124 1weo_A Cellulose synthase, cat 61.1 13 0.00043 25.7 4.4 50 157-206 15-69 (93)
125 1weu_A Inhibitor of growth fam 60.9 3.3 0.00011 28.7 1.4 45 157-205 35-86 (91)
126 4gne_A Histone-lysine N-methyl 58.6 4.7 0.00016 28.8 1.9 43 156-203 13-61 (107)
127 1dvp_A HRS, hepatocyte growth 57.3 6.2 0.00021 31.4 2.7 34 158-191 161-195 (220)
128 2ri7_A Nucleosome-remodeling f 56.2 2.5 8.4E-05 32.4 0.1 47 156-203 6-58 (174)
129 2vnf_A ING 4, P29ING4, inhibit 55.9 2 6.9E-05 27.2 -0.4 43 157-203 9-58 (60)
130 2kgg_A Histone demethylase jar 55.6 5.6 0.00019 24.2 1.7 42 161-202 5-52 (52)
131 3zyq_A Hepatocyte growth facto 54.5 7.1 0.00024 31.3 2.6 36 157-192 163-199 (226)
132 2xb1_A Pygopus homolog 2, B-ce 54.1 8.4 0.00029 27.2 2.6 47 159-205 4-62 (105)
133 3mpx_A FYVE, rhogef and PH dom 52.5 2.9 0.0001 36.4 0.0 51 155-205 372-430 (434)
134 3a1b_A DNA (cytosine-5)-methyl 51.3 10 0.00035 29.0 2.9 36 156-194 77-114 (159)
135 2cu8_A Cysteine-rich protein 2 46.1 19 0.00065 23.0 3.3 40 158-207 9-48 (76)
136 2pv0_B DNA (cytosine-5)-methyl 46.0 17 0.00059 31.7 3.8 44 157-203 92-147 (386)
137 2jvx_A NF-kappa-B essential mo 45.7 4.9 0.00017 21.6 0.2 11 196-206 4-14 (28)
138 2a20_A Regulating synaptic mem 45.6 18 0.00061 23.0 2.8 48 156-203 7-59 (62)
139 1iml_A CRIP, cysteine rich int 45.0 13 0.00043 23.9 2.3 45 157-205 26-71 (76)
140 2dj7_A Actin-binding LIM prote 44.2 23 0.00078 23.1 3.5 40 157-206 14-53 (80)
141 3o70_A PHD finger protein 13; 44.2 12 0.00041 24.2 2.0 47 156-203 17-66 (68)
142 2apo_B Ribosome biogenesis pro 43.1 14 0.00049 23.5 2.1 19 195-213 18-36 (60)
143 2ysm_A Myeloid/lymphoid or mix 42.8 11 0.00037 26.5 1.7 44 160-203 56-103 (111)
144 1zfo_A LAsp-1; LIM domain, zin 42.2 9.2 0.00031 20.6 1.0 27 159-187 4-30 (31)
145 1wd2_A Ariadne-1 protein homol 41.7 4.8 0.00016 25.5 -0.3 37 159-195 7-48 (60)
146 2pk7_A Uncharacterized protein 41.4 6.1 0.00021 25.9 0.2 18 190-207 3-20 (69)
147 2jmo_A Parkin; IBR, E3 ligase, 41.0 2.3 7.8E-05 28.6 -2.0 16 178-193 55-70 (80)
148 3vhs_A ATPase wrnip1; zinc fin 40.8 7 0.00024 20.5 0.3 10 197-206 8-17 (29)
149 3c6w_A P28ING5, inhibitor of g 40.6 5.5 0.00019 25.1 -0.1 43 157-203 8-57 (59)
150 2kwj_A Zinc finger protein DPF 40.5 10 0.00034 27.0 1.3 46 160-205 60-109 (114)
151 2xjy_A Rhombotin-2; oncoprotei 40.0 26 0.0009 24.8 3.5 49 158-206 29-77 (131)
152 1x62_A C-terminal LIM domain p 39.6 22 0.00074 23.0 2.8 39 157-206 14-52 (79)
153 1m3v_A FLIN4, fusion of the LI 39.5 22 0.00075 25.2 3.0 49 159-207 33-81 (122)
154 1x4l_A Skeletal muscle LIM-pro 39.3 21 0.00072 22.5 2.6 40 158-206 5-46 (72)
155 2o35_A Hypothetical protein DU 38.5 13 0.00043 26.2 1.4 12 183-194 43-54 (105)
156 3fyb_A Protein of unknown func 38.3 13 0.00044 26.2 1.4 11 183-193 42-52 (104)
157 1wew_A DNA-binding family prot 37.8 26 0.00089 23.0 3.0 48 157-205 15-73 (78)
158 4ayb_P DNA-directed RNA polyme 37.3 2.2 7.4E-05 25.9 -2.3 13 196-208 24-36 (48)
159 2co8_A NEDD9 interacting prote 37.2 28 0.00094 22.7 3.0 40 157-206 14-53 (82)
160 1x63_A Skeletal muscle LIM-pro 36.6 43 0.0015 21.5 3.9 41 158-207 15-55 (82)
161 2csz_A Synaptotagmin-like prot 36.0 23 0.00077 23.6 2.3 33 156-188 23-57 (76)
162 2ct7_A Ring finger protein 31; 35.8 3.7 0.00013 27.8 -1.7 34 161-194 28-64 (86)
163 2jny_A Uncharacterized BCR; st 34.0 5.6 0.00019 25.9 -0.9 16 191-206 6-21 (67)
164 3pwf_A Rubrerythrin; non heme 33.1 22 0.00074 27.2 2.2 24 174-204 139-162 (170)
165 3f6q_B LIM and senescent cell 33.1 24 0.00082 21.9 2.1 42 157-207 10-51 (72)
166 2aus_D NOP10, ribosome biogene 33.0 19 0.00066 22.8 1.6 19 195-213 17-35 (60)
167 1x68_A FHL5 protein; four-and- 32.7 39 0.0013 21.4 3.2 40 159-206 6-46 (76)
168 1wyh_A SLIM 2, skeletal muscle 32.1 53 0.0018 20.3 3.7 40 159-207 6-45 (72)
169 2dar_A PDZ and LIM domain prot 31.8 37 0.0013 22.4 3.0 38 158-206 25-62 (90)
170 2d8x_A Protein pinch; LIM doma 31.7 22 0.00075 22.2 1.7 38 159-207 6-43 (70)
171 2lcq_A Putative toxin VAPC6; P 31.0 16 0.00056 27.4 1.2 28 173-206 132-159 (165)
172 1lv3_A Hypothetical protein YA 30.2 18 0.00062 23.6 1.1 13 196-208 10-22 (68)
173 1x4k_A Skeletal muscle LIM-pro 30.1 50 0.0017 20.5 3.3 39 159-206 6-44 (72)
174 1x64_A Alpha-actinin-2 associa 29.9 50 0.0017 21.7 3.4 39 158-207 25-63 (89)
175 2l3k_A Rhombotin-2, linker, LI 28.5 33 0.0011 24.3 2.4 34 159-193 37-70 (123)
176 1g47_A Pinch protein; LIM doma 28.4 53 0.0018 20.7 3.3 42 157-207 10-51 (77)
177 1wee_A PHD finger family prote 28.4 22 0.00074 23.0 1.2 47 157-204 15-66 (72)
178 3kqi_A GRC5, PHD finger protei 28.3 36 0.0012 22.0 2.4 44 161-204 12-61 (75)
179 2kpi_A Uncharacterized protein 28.2 4.4 0.00015 25.4 -2.1 9 197-205 12-20 (56)
180 6rxn_A Rubredoxin; electron tr 27.9 13 0.00043 22.3 0.0 8 197-204 32-39 (46)
181 1rut_X Flinc4, fusion protein 26.8 27 0.00093 26.7 1.8 26 180-205 54-79 (188)
182 1lko_A Rubrerythrin all-iron(I 26.7 24 0.00082 27.4 1.5 24 175-204 157-180 (191)
183 2kdx_A HYPA, hydrogenase/ureas 26.5 25 0.00086 25.0 1.4 25 174-204 74-99 (119)
184 3c5k_A HD6, histone deacetylas 26.2 35 0.0012 24.1 2.1 24 158-184 24-47 (109)
185 2cor_A Pinch protein; LIM doma 26.0 54 0.0018 21.1 3.0 39 157-206 14-52 (79)
186 2jne_A Hypothetical protein YF 26.0 27 0.00093 24.4 1.4 40 159-206 33-72 (101)
187 1a7i_A QCRP2 (LIM1); LIM domai 25.7 20 0.00067 23.3 0.7 38 159-206 8-45 (81)
188 1nyp_A Pinch protein; LIM doma 25.5 54 0.0019 20.0 2.8 38 159-207 6-43 (66)
189 1v6g_A Actin binding LIM prote 25.3 45 0.0015 21.4 2.5 38 159-207 16-53 (81)
190 1wig_A KIAA1808 protein; LIM d 25.2 76 0.0026 20.0 3.5 37 159-206 6-42 (73)
191 2d8z_A Four and A half LIM dom 25.2 73 0.0025 19.6 3.4 37 159-206 6-42 (70)
192 2jr6_A UPF0434 protein NMA0874 24.2 6.2 0.00021 25.8 -2.0 12 197-208 28-39 (68)
193 2cuq_A Four and A half LIM dom 23.8 69 0.0024 20.3 3.2 37 159-206 16-52 (80)
194 2hf1_A Tetraacyldisaccharide-1 22.4 6.3 0.00021 25.7 -2.3 11 197-207 28-38 (68)
195 2xqn_T Testin, TESS; metal-bin 22.2 1.2E+02 0.004 21.1 4.4 46 158-207 30-75 (126)
196 2d8y_A Eplin protein; LIM doma 21.9 1E+02 0.0036 20.1 3.9 27 159-187 16-42 (91)
197 2l4z_A DNA endonuclease RBBP8, 21.8 56 0.0019 23.2 2.6 40 157-206 60-99 (123)
198 2egq_A FHL1 protein; LIM domai 21.5 92 0.0032 19.5 3.4 40 159-207 16-58 (77)
199 2js4_A UPF0434 protein BB2007; 21.0 6.6 0.00023 25.8 -2.4 12 197-208 28-39 (70)
No 1
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.67 E-value=4.4e-17 Score=105.38 Aligned_cols=51 Identities=27% Similarity=0.774 Sum_probs=45.8
Q ss_pred CCCCccccccccccCCCCeEEcC-cCCeechhHHHHHHhcCCCccccccccc
Q 028139 156 EEEDVCPTCLEEYDAENPRIITK-CEHHFHLACIFEWMERSDTCPVCNQEMI 206 (213)
Q Consensus 156 ee~~~C~ICle~~~~~~~~~~l~-CgH~Fh~~CI~~Wl~~~~~CPvCr~~l~ 206 (213)
+++..|+||++.|..++....++ |||.||..||.+|++++.+||+||+.+.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp CCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred CCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence 45667999999998877777776 9999999999999999999999999875
No 2
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.67 E-value=9.6e-17 Score=108.61 Aligned_cols=55 Identities=27% Similarity=0.741 Sum_probs=49.1
Q ss_pred CCCCccccccccccCCCCeEEcCcCCeechhHHHHHHhcCCCcccccccccCCCC
Q 028139 156 EEEDVCPTCLEEYDAENPRIITKCEHHFHLACIFEWMERSDTCPVCNQEMIFDLP 210 (213)
Q Consensus 156 ee~~~C~ICle~~~~~~~~~~l~CgH~Fh~~CI~~Wl~~~~~CPvCr~~l~~~~~ 210 (213)
++...|+||++.|..+..++.++|||.||..||.+|++.+.+||+||+.+....+
T Consensus 12 ~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 66 (69)
T 2kiz_A 12 DTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIEAQLP 66 (69)
T ss_dssp TCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHCSBCTTTCSBSCSCCC
T ss_pred CCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcCCCCcCcCccccCcCC
Confidence 4556799999999887788899999999999999999999999999999876654
No 3
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=2.1e-16 Score=108.35 Aligned_cols=54 Identities=30% Similarity=0.838 Sum_probs=47.9
Q ss_pred CCCCccccccccccCCCCeEEcCcCCeechhHHHHHHhcCCCcccccccccCCC
Q 028139 156 EEEDVCPTCLEEYDAENPRIITKCEHHFHLACIFEWMERSDTCPVCNQEMIFDL 209 (213)
Q Consensus 156 ee~~~C~ICle~~~~~~~~~~l~CgH~Fh~~CI~~Wl~~~~~CPvCr~~l~~~~ 209 (213)
+++..|+||++.|.....+..++|||.||..||.+|++.+.+||+||+.+..-.
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~~~ 66 (74)
T 2ep4_A 13 NLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVLQLA 66 (74)
T ss_dssp CCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHCSBCTTTCCBCSSCC
T ss_pred CCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcCCcCCCcCccccccc
Confidence 456679999999988888888899999999999999999999999999886543
No 4
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=7.7e-17 Score=110.97 Aligned_cols=53 Identities=25% Similarity=0.785 Sum_probs=47.9
Q ss_pred CCCCccccccccccCCCCeEEcCcCCeechhHHHHHHhcCCCcccccccccCC
Q 028139 156 EEEDVCPTCLEEYDAENPRIITKCEHHFHLACIFEWMERSDTCPVCNQEMIFD 208 (213)
Q Consensus 156 ee~~~C~ICle~~~~~~~~~~l~CgH~Fh~~CI~~Wl~~~~~CPvCr~~l~~~ 208 (213)
++...|+|||+.|..++.++.++|||.||..||.+|++.+.+||+||+.+...
T Consensus 21 ~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~~ 73 (75)
T 1x4j_A 21 SEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADSGPS 73 (75)
T ss_dssp SSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHCSSCTTTCCCCCCC
T ss_pred CCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcCCcCcCcCCcCCCC
Confidence 45678999999998888888899999999999999999999999999988654
No 5
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.63 E-value=2.1e-16 Score=109.47 Aligned_cols=55 Identities=33% Similarity=0.769 Sum_probs=48.9
Q ss_pred CCCCccccccccccCCCCeEEcCcCCeechhHHHHHHhcCCCcccccccccCCCC
Q 028139 156 EEEDVCPTCLEEYDAENPRIITKCEHHFHLACIFEWMERSDTCPVCNQEMIFDLP 210 (213)
Q Consensus 156 ee~~~C~ICle~~~~~~~~~~l~CgH~Fh~~CI~~Wl~~~~~CPvCr~~l~~~~~ 210 (213)
++...|+||++.|.....++.++|||.||..||.+|++.+.+||+||+.+...+.
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 67 (78)
T 2ect_A 13 GSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLTGQNT 67 (78)
T ss_dssp SSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTTCSCTTTCCCCCCSCS
T ss_pred CCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcCCcCcCcCCccCCccc
Confidence 4556799999999887788889999999999999999999999999999876653
No 6
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.62 E-value=2.4e-16 Score=112.74 Aligned_cols=52 Identities=35% Similarity=0.765 Sum_probs=47.2
Q ss_pred CCCCccccccccccCCCCeEEcCcCCeechhHHHHHHhcCCCcccccccccC
Q 028139 156 EEEDVCPTCLEEYDAENPRIITKCEHHFHLACIFEWMERSDTCPVCNQEMIF 207 (213)
Q Consensus 156 ee~~~C~ICle~~~~~~~~~~l~CgH~Fh~~CI~~Wl~~~~~CPvCr~~l~~ 207 (213)
+++..|+|||+.|..+..++.++|||.||..||.+|++.+.+||+||+.+..
T Consensus 38 ~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 38 GQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKSGTCPVCRCMFPP 89 (91)
T ss_dssp SSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTTTCBCTTTCCBSSC
T ss_pred CCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHcCCcCcCcCccCCC
Confidence 4567899999999888888889999999999999999999999999998754
No 7
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=2.9e-16 Score=110.05 Aligned_cols=53 Identities=28% Similarity=0.772 Sum_probs=42.2
Q ss_pred CCCCccccccccccC-----------CC-CeEEcCcCCeechhHHHHHHhcCCCcccccccccCC
Q 028139 156 EEEDVCPTCLEEYDA-----------EN-PRIITKCEHHFHLACIFEWMERSDTCPVCNQEMIFD 208 (213)
Q Consensus 156 ee~~~C~ICle~~~~-----------~~-~~~~l~CgH~Fh~~CI~~Wl~~~~~CPvCr~~l~~~ 208 (213)
.+++.|+||++.|.. ++ .+.+++|||.||..||.+||+++.+||+||+.+.+.
T Consensus 13 ~~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~~ 77 (81)
T 2ecl_A 13 VECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVVQ 77 (81)
T ss_dssp CCCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCCEE
T ss_pred CCCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcchh
Confidence 345668888888843 33 334456999999999999999999999999988654
No 8
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.60 E-value=7.5e-16 Score=99.45 Aligned_cols=51 Identities=25% Similarity=0.610 Sum_probs=44.1
Q ss_pred CCCCccccccccccC-CCCeEEcCcCCeechhHHHHHHhcCCCccccccccc
Q 028139 156 EEEDVCPTCLEEYDA-ENPRIITKCEHHFHLACIFEWMERSDTCPVCNQEMI 206 (213)
Q Consensus 156 ee~~~C~ICle~~~~-~~~~~~l~CgH~Fh~~CI~~Wl~~~~~CPvCr~~l~ 206 (213)
.++..|+||++.|.. +..+++++|||.||..||.+|++.+.+||+||+.+.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 3 SGSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp SCCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred CCCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence 345679999999954 456788999999999999999999999999999764
No 9
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.58 E-value=2.3e-15 Score=102.75 Aligned_cols=55 Identities=27% Similarity=0.514 Sum_probs=47.4
Q ss_pred CCCCccccccccccCCCCeEEcCcCCeechhHHHHHHhcCCCcccccccccCCCCCC
Q 028139 156 EEEDVCPTCLEEYDAENPRIITKCEHHFHLACIFEWMERSDTCPVCNQEMIFDLPVD 212 (213)
Q Consensus 156 ee~~~C~ICle~~~~~~~~~~l~CgH~Fh~~CI~~Wl~~~~~CPvCr~~l~~~~~~~ 212 (213)
++...|+||++.|.. ++.+++|||.||..||.+|++.+.+||+||+.+..++++.
T Consensus 13 ~~~~~C~IC~~~~~~--p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~ 67 (72)
T 2djb_A 13 TPYILCSICKGYLID--ATTITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQTQPLS 67 (72)
T ss_dssp CGGGSCTTTSSCCSS--CEECSSSCCEECHHHHHHHHHHCSSCTTTCCCCCSSCSCC
T ss_pred CCCCCCCCCChHHHC--cCEECCCCCHHHHHHHHHHHHcCCcCCCcCcccCcccccc
Confidence 456679999999865 4555699999999999999999999999999998887765
No 10
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.57 E-value=1.5e-15 Score=102.95 Aligned_cols=55 Identities=24% Similarity=0.638 Sum_probs=47.4
Q ss_pred CCCCccccccccccC----CCCeEEcCcCCeechhHHHHHHhcCCCcccccccccCCCC
Q 028139 156 EEEDVCPTCLEEYDA----ENPRIITKCEHHFHLACIFEWMERSDTCPVCNQEMIFDLP 210 (213)
Q Consensus 156 ee~~~C~ICle~~~~----~~~~~~l~CgH~Fh~~CI~~Wl~~~~~CPvCr~~l~~~~~ 210 (213)
+++..|+||++.|.. +...+.++|||.||..||.+|++.+.+||+||+.+..++.
T Consensus 8 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 66 (71)
T 3ng2_A 8 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRY 66 (71)
T ss_dssp TTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCCCSC
T ss_pred CCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcCCCCCCCCCccChhhe
Confidence 456779999999854 3556889999999999999999999999999999876654
No 11
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.56 E-value=2.5e-15 Score=101.12 Aligned_cols=52 Identities=25% Similarity=0.706 Sum_probs=44.6
Q ss_pred CCCCccccccccccC----CCCeEEcCcCCeechhHHHHHHhcCCCcccccccccC
Q 028139 156 EEEDVCPTCLEEYDA----ENPRIITKCEHHFHLACIFEWMERSDTCPVCNQEMIF 207 (213)
Q Consensus 156 ee~~~C~ICle~~~~----~~~~~~l~CgH~Fh~~CI~~Wl~~~~~CPvCr~~l~~ 207 (213)
.+...|+||++.|.. +..+++++|||.||..||.+|++.+.+||+||+.+..
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 13 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 68 (69)
T ss_dssp TCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHCSSCTTTCCCCCC
T ss_pred CCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcCCCCCCCCCccCc
Confidence 456779999999854 3445789999999999999999999999999998753
No 12
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.56 E-value=2.6e-15 Score=110.53 Aligned_cols=53 Identities=28% Similarity=0.606 Sum_probs=45.1
Q ss_pred CCCCccccccccccCC---------------CCeEEcCcCCeechhHHHHHHhcCCCcccccccccCC
Q 028139 156 EEEDVCPTCLEEYDAE---------------NPRIITKCEHHFHLACIFEWMERSDTCPVCNQEMIFD 208 (213)
Q Consensus 156 ee~~~C~ICle~~~~~---------------~~~~~l~CgH~Fh~~CI~~Wl~~~~~CPvCr~~l~~~ 208 (213)
.+++.|+||++.|... ..++.++|+|.||..||.+||+++.+||+||+.+.++
T Consensus 35 ~~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~~~ 102 (106)
T 3dpl_R 35 IVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEFQ 102 (106)
T ss_dssp SCSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCSBCSSSCSBCCEE
T ss_pred CCCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcCCcCcCCCCcceee
Confidence 4567899999999753 2467789999999999999999999999999987553
No 13
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.53 E-value=3.5e-15 Score=98.95 Aligned_cols=53 Identities=25% Similarity=0.674 Sum_probs=45.5
Q ss_pred CCCccccccccccC----CCCeEEcCcCCeechhHHHHHHhcCCCcccccccccCCC
Q 028139 157 EEDVCPTCLEEYDA----ENPRIITKCEHHFHLACIFEWMERSDTCPVCNQEMIFDL 209 (213)
Q Consensus 157 e~~~C~ICle~~~~----~~~~~~l~CgH~Fh~~CI~~Wl~~~~~CPvCr~~l~~~~ 209 (213)
++..|+||++.|.. +..++.++|||.||..||.+|++.+.+||+||+.+..++
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 58 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKR 58 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHCSBCTTTCCBCTTTC
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcCCCCCCCCccCCccc
Confidence 34679999999854 345578999999999999999999999999999987665
No 14
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.53 E-value=6.8e-15 Score=102.93 Aligned_cols=53 Identities=40% Similarity=0.906 Sum_probs=45.7
Q ss_pred CCCCccccccccccCCCCeEEcCcC-----CeechhHHHHHHhcCC--CcccccccccCCC
Q 028139 156 EEEDVCPTCLEEYDAENPRIITKCE-----HHFHLACIFEWMERSD--TCPVCNQEMIFDL 209 (213)
Q Consensus 156 ee~~~C~ICle~~~~~~~~~~l~Cg-----H~Fh~~CI~~Wl~~~~--~CPvCr~~l~~~~ 209 (213)
.+++.|.|||++|..++.+ +++|+ |.||..||.+||+.++ +||+||+.+.++.
T Consensus 13 ~~~~~C~IC~~~~~~~~~l-~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~~ 72 (80)
T 2d8s_A 13 SSQDICRICHCEGDDESPL-ITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIMET 72 (80)
T ss_dssp TTSCCCSSSCCCCCSSSCE-ECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCCC
T ss_pred CCCCCCeEcCccccCCCee-EeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecCc
Confidence 5567799999999877766 68996 9999999999998764 8999999997765
No 15
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.51 E-value=1.2e-14 Score=107.54 Aligned_cols=52 Identities=31% Similarity=0.652 Sum_probs=41.7
Q ss_pred CCCccccccccccCCC---------------CeEEcCcCCeechhHHHHHH-----hcCCCcccccccccCC
Q 028139 157 EEDVCPTCLEEYDAEN---------------PRIITKCEHHFHLACIFEWM-----ERSDTCPVCNQEMIFD 208 (213)
Q Consensus 157 e~~~C~ICle~~~~~~---------------~~~~l~CgH~Fh~~CI~~Wl-----~~~~~CPvCr~~l~~~ 208 (213)
.++.|+|||+.|.... .+.+++|||.||..||.+|| +.+.+||+||+.+...
T Consensus 24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~ 95 (114)
T 1v87_A 24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEK 95 (114)
T ss_dssp CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSC
T ss_pred CCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCC
Confidence 3457999999995532 34478999999999999999 4577999999987543
No 16
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.51 E-value=8.3e-15 Score=99.71 Aligned_cols=50 Identities=24% Similarity=0.458 Sum_probs=43.4
Q ss_pred CCCCccccccccccCCCCeEEcCcCCeechhHHHHHHhcCCCcccccccccCC
Q 028139 156 EEEDVCPTCLEEYDAENPRIITKCEHHFHLACIFEWMERSDTCPVCNQEMIFD 208 (213)
Q Consensus 156 ee~~~C~ICle~~~~~~~~~~l~CgH~Fh~~CI~~Wl~~~~~CPvCr~~l~~~ 208 (213)
.+...|+||++.|.. .+.++|||.||..||.+|++.+.+||+||+.+..+
T Consensus 13 ~~~~~C~IC~~~~~~---~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 62 (71)
T 2d8t_A 13 LTVPECAICLQTCVH---PVSLPCKHVFCYLCVKGASWLGKRCALCRQEIPED 62 (71)
T ss_dssp SSCCBCSSSSSBCSS---EEEETTTEEEEHHHHHHCTTCSSBCSSSCCBCCHH
T ss_pred CCCCCCccCCcccCC---CEEccCCCHHHHHHHHHHHHCCCcCcCcCchhCHh
Confidence 456779999999855 56789999999999999999999999999988543
No 17
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.50 E-value=5.6e-15 Score=100.08 Aligned_cols=50 Identities=30% Similarity=0.775 Sum_probs=44.1
Q ss_pred CCCCccccccccccCCCCeEEcCcCCeechhHHHHHHhcCCCcccccccccCCC
Q 028139 156 EEEDVCPTCLEEYDAENPRIITKCEHHFHLACIFEWMERSDTCPVCNQEMIFDL 209 (213)
Q Consensus 156 ee~~~C~ICle~~~~~~~~~~l~CgH~Fh~~CI~~Wl~~~~~CPvCr~~l~~~~ 209 (213)
.+...|+||++.+.. +.++|||.||..||.+|++++.+||+||+.+...+
T Consensus 13 ~~~~~C~IC~~~~~~----~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 62 (70)
T 2ecn_A 13 TDEEECCICMDGRAD----LILPCAHSFCQKCIDKWSDRHRNCPICRLQMTGAN 62 (70)
T ss_dssp CCCCCCSSSCCSCCS----EEETTTEEECHHHHHHSSCCCSSCHHHHHCTTCCC
T ss_pred CCCCCCeeCCcCccC----cccCCCCcccHHHHHHHHHCcCcCCCcCCcccCCC
Confidence 456779999999865 68899999999999999999999999999887554
No 18
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.50 E-value=1.3e-14 Score=97.61 Aligned_cols=49 Identities=31% Similarity=0.798 Sum_probs=42.8
Q ss_pred CCCCccccccccccCCCCeEEcCcCCeechhHHHHHHhcCCCccccccccc
Q 028139 156 EEEDVCPTCLEEYDAENPRIITKCEHHFHLACIFEWMERSDTCPVCNQEMI 206 (213)
Q Consensus 156 ee~~~C~ICle~~~~~~~~~~l~CgH~Fh~~CI~~Wl~~~~~CPvCr~~l~ 206 (213)
+++..|+||++.+.. +.+.++|||.||..||.+|++.+.+||+||+.+.
T Consensus 3 ~~~~~C~IC~~~~~~--~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~ 51 (68)
T 1chc_A 3 TVAERCPICLEDPSN--YSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVE 51 (68)
T ss_dssp CCCCCCSSCCSCCCS--CEEETTTTEEESTTHHHHHHHHSCSTTTTCCCCC
T ss_pred CCCCCCeeCCccccC--CcEecCCCCeeHHHHHHHHHhCcCcCcCCChhhH
Confidence 455679999999853 4688999999999999999999999999999874
No 19
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.49 E-value=3.8e-14 Score=99.82 Aligned_cols=54 Identities=24% Similarity=0.566 Sum_probs=46.0
Q ss_pred CCCCccccccccccCCCC-eEEcCcCCeechhHHHHHHhcC---CCcccccccccCCC
Q 028139 156 EEEDVCPTCLEEYDAENP-RIITKCEHHFHLACIFEWMERS---DTCPVCNQEMIFDL 209 (213)
Q Consensus 156 ee~~~C~ICle~~~~~~~-~~~l~CgH~Fh~~CI~~Wl~~~---~~CPvCr~~l~~~~ 209 (213)
++...|+||++.|...+. .++++|||.||..||.+|++.+ .+||+||+.+..++
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~ 70 (88)
T 2ct2_A 13 REVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRITS 70 (88)
T ss_dssp CSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCSS
T ss_pred cCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccchh
Confidence 556789999999976553 7788999999999999999886 78999999886654
No 20
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.48 E-value=3.9e-14 Score=97.23 Aligned_cols=51 Identities=24% Similarity=0.518 Sum_probs=42.5
Q ss_pred CCCCccccccccccCCCCeEEcC-cCCeechhHHHHHHhcC--CCcccccccccCCC
Q 028139 156 EEEDVCPTCLEEYDAENPRIITK-CEHHFHLACIFEWMERS--DTCPVCNQEMIFDL 209 (213)
Q Consensus 156 ee~~~C~ICle~~~~~~~~~~l~-CgH~Fh~~CI~~Wl~~~--~~CPvCr~~l~~~~ 209 (213)
+++..|+||++.|.. .+.++ |||.||..||..|++.+ .+||+||+.+...+
T Consensus 13 ~~~~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~ 66 (74)
T 2yur_A 13 PDELLCLICKDIMTD---AVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPD 66 (74)
T ss_dssp CGGGSCSSSCCCCTT---CEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCCTT
T ss_pred CCCCCCcCCChHHhC---CeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCCcc
Confidence 456689999999865 45688 99999999999999876 68999999865544
No 21
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.48 E-value=4.5e-14 Score=96.15 Aligned_cols=51 Identities=31% Similarity=0.704 Sum_probs=43.3
Q ss_pred CCCCccccccccccCCCCeEEcCcCCeechhHHHHHHh---cCCCcccccccccCCC
Q 028139 156 EEEDVCPTCLEEYDAENPRIITKCEHHFHLACIFEWME---RSDTCPVCNQEMIFDL 209 (213)
Q Consensus 156 ee~~~C~ICle~~~~~~~~~~l~CgH~Fh~~CI~~Wl~---~~~~CPvCr~~l~~~~ 209 (213)
++...|+||++.|.. .+.++|||.||..||.+|++ ....||+||+.+..++
T Consensus 18 ~~~~~C~IC~~~~~~---~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~ 71 (73)
T 2ysl_A 18 QEEVICPICLDILQK---PVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKNA 71 (73)
T ss_dssp CCCCBCTTTCSBCSS---EEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCCC
T ss_pred ccCCEeccCCcccCC---eEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCccc
Confidence 456789999999864 66789999999999999997 4568999999987654
No 22
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=99.47 E-value=4.1e-15 Score=111.16 Aligned_cols=53 Identities=28% Similarity=0.606 Sum_probs=1.6
Q ss_pred CCCCccccccccccCC---------------CCeEEcCcCCeechhHHHHHHhcCCCcccccccccCC
Q 028139 156 EEEDVCPTCLEEYDAE---------------NPRIITKCEHHFHLACIFEWMERSDTCPVCNQEMIFD 208 (213)
Q Consensus 156 ee~~~C~ICle~~~~~---------------~~~~~l~CgH~Fh~~CI~~Wl~~~~~CPvCr~~l~~~ 208 (213)
.+++.|+||++.|... ..+..++|+|.||..||.+||+++.+||+||+++.+.
T Consensus 46 ~~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~~~~~ 113 (117)
T 4a0k_B 46 IVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEFQ 113 (117)
T ss_dssp CCC-----------------------------------------------------------------
T ss_pred CCCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCCcCCCCCCeeeee
Confidence 4567899999999642 1334468999999999999999999999999987654
No 23
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.46 E-value=4.1e-14 Score=94.83 Aligned_cols=52 Identities=23% Similarity=0.522 Sum_probs=43.4
Q ss_pred CCCCccccccccccCCCCeEEcCcCCeechhHHHHHHh-cCCCcccccccccCCCC
Q 028139 156 EEEDVCPTCLEEYDAENPRIITKCEHHFHLACIFEWME-RSDTCPVCNQEMIFDLP 210 (213)
Q Consensus 156 ee~~~C~ICle~~~~~~~~~~l~CgH~Fh~~CI~~Wl~-~~~~CPvCr~~l~~~~~ 210 (213)
++...|+||++.+.. .+.++|||.||..||.+|++ ...+||+||+.+..++.
T Consensus 13 ~~~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~i 65 (66)
T 2ecy_A 13 EDKYKCEKCHLVLCS---PKQTECGHRFCESCMAALLSSSSPKCTACQESIVKDKV 65 (66)
T ss_dssp CCCEECTTTCCEESS---CCCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCTTTC
T ss_pred CcCCCCCCCChHhcC---eeECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCChhhc
Confidence 456789999999865 34589999999999999994 56789999999877653
No 24
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.46 E-value=1.9e-14 Score=110.31 Aligned_cols=49 Identities=35% Similarity=0.782 Sum_probs=43.1
Q ss_pred CCCCccccccccccCCCCeEEcCcCCeechhHHHHHHhcCCCcccccccccC
Q 028139 156 EEEDVCPTCLEEYDAENPRIITKCEHHFHLACIFEWMERSDTCPVCNQEMIF 207 (213)
Q Consensus 156 ee~~~C~ICle~~~~~~~~~~l~CgH~Fh~~CI~~Wl~~~~~CPvCr~~l~~ 207 (213)
+++..|+||++.|.. +++++|||.||..||..|++++.+||+||+.+..
T Consensus 51 ~~~~~C~iC~~~~~~---~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 99 (138)
T 4ayc_A 51 ENELQCIICSEYFIE---AVTLNCAHSFCSYCINEWMKRKIECPICRKDIKS 99 (138)
T ss_dssp HHHSBCTTTCSBCSS---EEEETTSCEEEHHHHHHHTTTCSBCTTTCCBCCC
T ss_pred cccCCCcccCcccCC---ceECCCCCCccHHHHHHHHHcCCcCCCCCCcCCC
Confidence 455679999999865 6788999999999999999999999999998753
No 25
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.46 E-value=5.7e-14 Score=97.87 Aligned_cols=48 Identities=27% Similarity=0.613 Sum_probs=42.4
Q ss_pred CCCCccccccccccCCCCeEEcCcCCeechhHHHHHHhcCCCccccccccc
Q 028139 156 EEEDVCPTCLEEYDAENPRIITKCEHHFHLACIFEWMERSDTCPVCNQEMI 206 (213)
Q Consensus 156 ee~~~C~ICle~~~~~~~~~~l~CgH~Fh~~CI~~Wl~~~~~CPvCr~~l~ 206 (213)
++...|+||++.|.. .++++|||.||..||.+|++...+||+||+.+.
T Consensus 13 ~~~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 13 EIPFRCFICRQAFQN---PVVTKCRHYFCESCALEHFRATPRCYICDQPTG 60 (81)
T ss_dssp CCCSBCSSSCSBCCS---EEECTTSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred CCCCCCcCCCchhcC---eeEccCCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence 445689999999855 567999999999999999999999999999875
No 26
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.42 E-value=2e-13 Score=94.27 Aligned_cols=51 Identities=22% Similarity=0.477 Sum_probs=44.0
Q ss_pred CCCCccccccccccCCCCeEEcCcCCeechhHHHHHHhc-CCCcccccccccCCC
Q 028139 156 EEEDVCPTCLEEYDAENPRIITKCEHHFHLACIFEWMER-SDTCPVCNQEMIFDL 209 (213)
Q Consensus 156 ee~~~C~ICle~~~~~~~~~~l~CgH~Fh~~CI~~Wl~~-~~~CPvCr~~l~~~~ 209 (213)
.++..|+||++.|.. .++++|||.||..||.+|++. +.+||+||+.+..++
T Consensus 6 ~~~~~C~IC~~~~~~---Pv~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~~ 57 (78)
T 1t1h_A 6 PEYFRCPISLELMKD---PVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAG 57 (78)
T ss_dssp SSSSSCTTTSCCCSS---EEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCC
T ss_pred cccCCCCCccccccC---CEEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCChhh
Confidence 456789999999865 567899999999999999987 789999999886654
No 27
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.41 E-value=6e-14 Score=101.83 Aligned_cols=52 Identities=23% Similarity=0.625 Sum_probs=43.4
Q ss_pred CCCCccccccccccCCCCeEEcCcCCeechhHHHHHHhcC-CCcccccccccCCC
Q 028139 156 EEEDVCPTCLEEYDAENPRIITKCEHHFHLACIFEWMERS-DTCPVCNQEMIFDL 209 (213)
Q Consensus 156 ee~~~C~ICle~~~~~~~~~~l~CgH~Fh~~CI~~Wl~~~-~~CPvCr~~l~~~~ 209 (213)
+++..|+||++.|.. ++.+++|||.||..||.+|++.+ .+||+||+.+..++
T Consensus 20 ~~~~~C~IC~~~~~~--p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 72 (100)
T 3lrq_A 20 AEVFRCFICMEKLRD--ARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLRE 72 (100)
T ss_dssp HHHTBCTTTCSBCSS--EEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCGGG
T ss_pred CCCCCCccCCccccC--ccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCHHH
Confidence 455679999999864 34339999999999999999988 69999999986554
No 28
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.39 E-value=3.2e-13 Score=94.10 Aligned_cols=51 Identities=37% Similarity=0.724 Sum_probs=43.5
Q ss_pred CCCCccccccccccCCCCeEEcCcCCeechhHHHHHHhc------CCCcccccccccCCC
Q 028139 156 EEEDVCPTCLEEYDAENPRIITKCEHHFHLACIFEWMER------SDTCPVCNQEMIFDL 209 (213)
Q Consensus 156 ee~~~C~ICle~~~~~~~~~~l~CgH~Fh~~CI~~Wl~~------~~~CPvCr~~l~~~~ 209 (213)
++...|+||++.|.. .++++|||.||..||..|++. ...||+||+.+..++
T Consensus 17 ~~~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~ 73 (85)
T 2ecw_A 17 KEEVTCPICLELLKE---PVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGN 73 (85)
T ss_dssp CTTTSCTTTCSCCSS---CEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTTC
T ss_pred ccCCCCcCCChhhCc---ceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHHh
Confidence 455679999999865 457899999999999999988 678999999987654
No 29
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.39 E-value=3.9e-13 Score=89.11 Aligned_cols=43 Identities=37% Similarity=0.851 Sum_probs=36.9
Q ss_pred CCCCccccccccccCCCCeEEcCcCCeechhHHHHHHh---cCCCcccc
Q 028139 156 EEEDVCPTCLEEYDAENPRIITKCEHHFHLACIFEWME---RSDTCPVC 201 (213)
Q Consensus 156 ee~~~C~ICle~~~~~~~~~~l~CgH~Fh~~CI~~Wl~---~~~~CPvC 201 (213)
+++..|+||++.|.. .++++|||.||..||.+|++ ...+||+|
T Consensus 18 ~~~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 18 QEEVICPICLDILQK---PVTIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCBCTTTCSBCSS---CEECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred ccCCCCCcCCchhCC---eEEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 556789999999864 55679999999999999998 45689998
No 30
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.37 E-value=4.1e-13 Score=93.55 Aligned_cols=51 Identities=31% Similarity=0.668 Sum_probs=43.5
Q ss_pred CCCCccccccccccCCCCeEEcCcCCeechhHHHHHHhc------CCCcccccccccCCC
Q 028139 156 EEEDVCPTCLEEYDAENPRIITKCEHHFHLACIFEWMER------SDTCPVCNQEMIFDL 209 (213)
Q Consensus 156 ee~~~C~ICle~~~~~~~~~~l~CgH~Fh~~CI~~Wl~~------~~~CPvCr~~l~~~~ 209 (213)
++...|+||++.|.. .+.++|||.||..||..|++. ...||+||+.+..++
T Consensus 17 ~~~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~ 73 (85)
T 2ecv_A 17 KEEVTCPICLELLTQ---PLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPEN 73 (85)
T ss_dssp CCCCCCTTTCSCCSS---CBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSS
T ss_pred cCCCCCCCCCcccCC---ceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHh
Confidence 456779999999865 456799999999999999987 789999999887654
No 31
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.37 E-value=4e-13 Score=92.38 Aligned_cols=53 Identities=21% Similarity=0.610 Sum_probs=45.0
Q ss_pred CCCCccccccccccCCCCeEEcCcCCeechhHHHHHHhcC--CCcccccccccCCCC
Q 028139 156 EEEDVCPTCLEEYDAENPRIITKCEHHFHLACIFEWMERS--DTCPVCNQEMIFDLP 210 (213)
Q Consensus 156 ee~~~C~ICle~~~~~~~~~~l~CgH~Fh~~CI~~Wl~~~--~~CPvCr~~l~~~~~ 210 (213)
+..+.|+||++.|..+ .....|+|.||..||.+||+.+ .+||+||+.+.++.+
T Consensus 13 ~~i~~C~IC~~~i~~g--~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~~~~ 67 (74)
T 2ct0_A 13 DAVKICNICHSLLIQG--QSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHEIP 67 (74)
T ss_dssp SSSCBCSSSCCBCSSS--EECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCCSCCC
T ss_pred CCCCcCcchhhHcccC--CccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCCCCCC
Confidence 4556799999999754 3455899999999999999887 899999999887764
No 32
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.37 E-value=5.9e-13 Score=94.72 Aligned_cols=48 Identities=25% Similarity=0.602 Sum_probs=41.0
Q ss_pred CCCCccccccccccCCCCeEEcC-cCCeechhHHHHHHhcC--CCccccccccc
Q 028139 156 EEEDVCPTCLEEYDAENPRIITK-CEHHFHLACIFEWMERS--DTCPVCNQEMI 206 (213)
Q Consensus 156 ee~~~C~ICle~~~~~~~~~~l~-CgH~Fh~~CI~~Wl~~~--~~CPvCr~~l~ 206 (213)
+++..|+||++.|.. .++++ |||.||..||.+|+..+ ..||+||+.+.
T Consensus 11 ~~~~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 61 (92)
T 3ztg_A 11 PDELLCLICKDIMTD---AVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV 61 (92)
T ss_dssp CTTTEETTTTEECSS---CEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred CcCCCCCCCChhhcC---ceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCC
Confidence 566789999999864 55788 99999999999999764 58999999874
No 33
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.37 E-value=9.3e-14 Score=95.94 Aligned_cols=51 Identities=33% Similarity=0.690 Sum_probs=43.1
Q ss_pred CCCCccccccccccCCCCeEEcCcCCeechhHHHHHHhc-------CCCcccccccccCCC
Q 028139 156 EEEDVCPTCLEEYDAENPRIITKCEHHFHLACIFEWMER-------SDTCPVCNQEMIFDL 209 (213)
Q Consensus 156 ee~~~C~ICle~~~~~~~~~~l~CgH~Fh~~CI~~Wl~~-------~~~CPvCr~~l~~~~ 209 (213)
+++..|+||++.|.. .+.++|||.||..||.+|++. ...||+||+.+..++
T Consensus 10 ~~~~~C~IC~~~~~~---p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~~ 67 (79)
T 2egp_A 10 QEEVTCPICLELLTE---PLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFEH 67 (79)
T ss_dssp CCCCEETTTTEECSS---CCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSSG
T ss_pred ccCCCCcCCCcccCC---eeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHhh
Confidence 566789999999865 456899999999999999987 678999999886543
No 34
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.36 E-value=2.6e-13 Score=102.10 Aligned_cols=54 Identities=24% Similarity=0.669 Sum_probs=45.9
Q ss_pred CCCCccccccccccC----CCCeEEcCcCCeechhHHHHHHhcCCCcccccccccCCC
Q 028139 156 EEEDVCPTCLEEYDA----ENPRIITKCEHHFHLACIFEWMERSDTCPVCNQEMIFDL 209 (213)
Q Consensus 156 ee~~~C~ICle~~~~----~~~~~~l~CgH~Fh~~CI~~Wl~~~~~CPvCr~~l~~~~ 209 (213)
.++..|+||++.|.. +...+.++|||.||..||.+|++.+.+||+||+.+..++
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 62 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKR 62 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCSBCTTTCCBCTTTC
T ss_pred CCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhCCCCCCCCCcCcccc
Confidence 355679999999954 344588999999999999999999999999999886554
No 35
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.36 E-value=6.1e-13 Score=88.74 Aligned_cols=53 Identities=21% Similarity=0.585 Sum_probs=41.9
Q ss_pred CCCccccccc-cccCCC-CeEEcCcCCeechhHHHHHHhc-CCCcccccccccCCC
Q 028139 157 EEDVCPTCLE-EYDAEN-PRIITKCEHHFHLACIFEWMER-SDTCPVCNQEMIFDL 209 (213)
Q Consensus 157 e~~~C~ICle-~~~~~~-~~~~l~CgH~Fh~~CI~~Wl~~-~~~CPvCr~~l~~~~ 209 (213)
++..|+||++ .|.... ..++++|||.||..||.+|+.+ +..||+||+.+..++
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 57 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSN 57 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCC
T ss_pred CCCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCcccccc
Confidence 3467999999 675432 3357899999999999999765 467999999987654
No 36
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.36 E-value=4.1e-13 Score=98.52 Aligned_cols=51 Identities=25% Similarity=0.612 Sum_probs=43.7
Q ss_pred CCCCccccccccccCCCCeEEcCcCCeechhHHHHHHhcCCCcccccccccCC
Q 028139 156 EEEDVCPTCLEEYDAENPRIITKCEHHFHLACIFEWMERSDTCPVCNQEMIFD 208 (213)
Q Consensus 156 ee~~~C~ICle~~~~~~~~~~l~CgH~Fh~~CI~~Wl~~~~~CPvCr~~l~~~ 208 (213)
+++..|+||++.|.. ++.+++|||.||..||..|++.+.+||+||+.+...
T Consensus 13 ~~~~~C~IC~~~~~~--p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 63 (108)
T 2ckl_A 13 NPHLMCVLCGGYFID--ATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHKT 63 (108)
T ss_dssp GGGTBCTTTSSBCSS--EEEETTTCCEEEHHHHHHHHTSCSBCTTTCCBSCSS
T ss_pred CCcCCCccCChHHhC--cCEeCCCCChhhHHHHHHHHHhCCcCcCCCcccccc
Confidence 456779999999864 444459999999999999999999999999988765
No 37
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.36 E-value=2.8e-13 Score=97.80 Aligned_cols=50 Identities=24% Similarity=0.625 Sum_probs=42.2
Q ss_pred CCCccccccccccCCCCeEEcCcCCeechhHHHHHHhcCCCcccccccccCC
Q 028139 157 EEDVCPTCLEEYDAENPRIITKCEHHFHLACIFEWMERSDTCPVCNQEMIFD 208 (213)
Q Consensus 157 e~~~C~ICle~~~~~~~~~~l~CgH~Fh~~CI~~Wl~~~~~CPvCr~~l~~~ 208 (213)
+...|+||++.|.. ++.+++|||.||..||..|++.+.+||+||+.+..+
T Consensus 21 ~~~~C~IC~~~~~~--p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 70 (99)
T 2y43_A 21 DLLRCGICFEYFNI--AMIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVTEP 70 (99)
T ss_dssp HHTBCTTTCSBCSS--EEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCGG
T ss_pred CCCCcccCChhhCC--cCEECCCCCHhhHHHHHHHHHCCCCCCCCCCcCChh
Confidence 45679999999865 344449999999999999999999999999988653
No 38
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.33 E-value=6.9e-13 Score=99.62 Aligned_cols=49 Identities=27% Similarity=0.465 Sum_probs=42.3
Q ss_pred CCCCccccccccccCCCCeEEcCcCCeechhHHHHHHhcCC-CcccccccccC
Q 028139 156 EEEDVCPTCLEEYDAENPRIITKCEHHFHLACIFEWMERSD-TCPVCNQEMIF 207 (213)
Q Consensus 156 ee~~~C~ICle~~~~~~~~~~l~CgH~Fh~~CI~~Wl~~~~-~CPvCr~~l~~ 207 (213)
++...|+||++.|.. .+.++|||.||..||..|++... .||+||+.+..
T Consensus 50 ~~~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 50 EETFQCICCQELVFR---PITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp HHHTBCTTTSSBCSS---EEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred ccCCCCCcCChHHcC---cEEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 455689999999875 66789999999999999998654 99999999865
No 39
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.33 E-value=7.1e-13 Score=86.08 Aligned_cols=43 Identities=44% Similarity=0.983 Sum_probs=36.3
Q ss_pred CCCCccccccccccCCCCeEEcCcCCeechhHHHHHH---hcCCCcccc
Q 028139 156 EEEDVCPTCLEEYDAENPRIITKCEHHFHLACIFEWM---ERSDTCPVC 201 (213)
Q Consensus 156 ee~~~C~ICle~~~~~~~~~~l~CgH~Fh~~CI~~Wl---~~~~~CPvC 201 (213)
++...|+||++.|.. .++++|||.||..||.+|+ +.+.+||+|
T Consensus 13 ~~~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 13 QVEASCSVCLEYLKE---PVIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CCCCBCSSSCCBCSS---CCCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred ccCCCCccCCcccCc---cEeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 456789999999865 3568999999999999995 456889998
No 40
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.30 E-value=1.1e-12 Score=98.70 Aligned_cols=55 Identities=24% Similarity=0.630 Sum_probs=46.9
Q ss_pred cCCCCccccccccccC----CCCeEEcCcCCeechhHHHHHHhcCCCcccccccccCCC
Q 028139 155 IEEEDVCPTCLEEYDA----ENPRIITKCEHHFHLACIFEWMERSDTCPVCNQEMIFDL 209 (213)
Q Consensus 155 ~ee~~~C~ICle~~~~----~~~~~~l~CgH~Fh~~CI~~Wl~~~~~CPvCr~~l~~~~ 209 (213)
.++...|+||++.|.. +...+.++|||.||..||.+|++.+.+||+||+.+..++
T Consensus 69 ~~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 127 (133)
T 4ap4_A 69 GSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKR 127 (133)
T ss_dssp SSSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHCSBCTTTCCBCCGGG
T ss_pred CCCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcCCCCCCCCCcCChhc
Confidence 3566789999999854 344578999999999999999999999999999987664
No 41
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.28 E-value=1.1e-12 Score=96.28 Aligned_cols=50 Identities=28% Similarity=0.718 Sum_probs=41.8
Q ss_pred CCCccccccccccCCCCeEEcCcCCeechhHHHHHHhcCC---CcccccccccCCC
Q 028139 157 EEDVCPTCLEEYDAENPRIITKCEHHFHLACIFEWMERSD---TCPVCNQEMIFDL 209 (213)
Q Consensus 157 e~~~C~ICle~~~~~~~~~~l~CgH~Fh~~CI~~Wl~~~~---~CPvCr~~l~~~~ 209 (213)
+...|+||++.|.. .+.++|||.||..||..|++.+. +||+||+.+..++
T Consensus 20 ~~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~ 72 (112)
T 1jm7_A 20 KILECPICLELIKE---PVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRS 72 (112)
T ss_dssp HHTSCSSSCCCCSS---CCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTT
T ss_pred CCCCCcccChhhcC---eEECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHhh
Confidence 34579999998854 45689999999999999998764 8999999887654
No 42
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.28 E-value=1.9e-12 Score=96.56 Aligned_cols=51 Identities=31% Similarity=0.657 Sum_probs=43.5
Q ss_pred CCCCccccccccccCCCCeEEcCcCCeechhHHHHHHhcCC-CcccccccccCCC
Q 028139 156 EEEDVCPTCLEEYDAENPRIITKCEHHFHLACIFEWMERSD-TCPVCNQEMIFDL 209 (213)
Q Consensus 156 ee~~~C~ICle~~~~~~~~~~l~CgH~Fh~~CI~~Wl~~~~-~CPvCr~~l~~~~ 209 (213)
++...|+||++.|.. .+.++|||.||..||.+|++.+. +||+||+.+..++
T Consensus 16 ~~~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 67 (118)
T 3hct_A 16 ESKYECPICLMALRE---AVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQ 67 (118)
T ss_dssp CGGGBCTTTCSBCSS---EEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGG
T ss_pred CCCCCCCcCChhhcC---eEECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCHHh
Confidence 556789999999865 56789999999999999998875 9999999886543
No 43
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.27 E-value=2.4e-12 Score=100.13 Aligned_cols=50 Identities=22% Similarity=0.517 Sum_probs=43.2
Q ss_pred CCCCccccccccccCCCCeEEcCcCCeechhHHHHHHhcCC-CcccccccccCC
Q 028139 156 EEEDVCPTCLEEYDAENPRIITKCEHHFHLACIFEWMERSD-TCPVCNQEMIFD 208 (213)
Q Consensus 156 ee~~~C~ICle~~~~~~~~~~l~CgH~Fh~~CI~~Wl~~~~-~CPvCr~~l~~~ 208 (213)
++...|+||++.|.. .++++|||.||..||..|++... .||+||+.+..+
T Consensus 76 ~~~~~C~IC~~~~~~---pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 76 EQSFMCVCCQELVYQ---PVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQN 126 (150)
T ss_dssp HHHTBCTTTSSBCSS---EEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred ccCCEeecCChhhcC---CEEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence 345689999999865 56799999999999999998765 899999998766
No 44
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=99.25 E-value=2.4e-12 Score=95.51 Aligned_cols=50 Identities=22% Similarity=0.485 Sum_probs=42.8
Q ss_pred CCCccccccccccCCCCeEEcCcCCeechhHHHHHHhc-CCCcccccccccCCC
Q 028139 157 EEDVCPTCLEEYDAENPRIITKCEHHFHLACIFEWMER-SDTCPVCNQEMIFDL 209 (213)
Q Consensus 157 e~~~C~ICle~~~~~~~~~~l~CgH~Fh~~CI~~Wl~~-~~~CPvCr~~l~~~~ 209 (213)
++..|+||++.|.. .+.++|||.||..||.+|++. ..+||+||+.+...+
T Consensus 22 ~~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 72 (116)
T 1rmd_A 22 KSISCQICEHILAD---PVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTD 72 (116)
T ss_dssp HHTBCTTTCSBCSS---EEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGG
T ss_pred CCCCCCCCCcHhcC---cEEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCHhh
Confidence 34679999999865 567899999999999999987 779999999986544
No 45
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.25 E-value=5.3e-12 Score=89.01 Aligned_cols=51 Identities=14% Similarity=0.029 Sum_probs=45.1
Q ss_pred CCCCccccccccccCCCCeEEcCcCCeechhHHHHHHhcCCCcccccccccCCC
Q 028139 156 EEEDVCPTCLEEYDAENPRIITKCEHHFHLACIFEWMERSDTCPVCNQEMIFDL 209 (213)
Q Consensus 156 ee~~~C~ICle~~~~~~~~~~l~CgH~Fh~~CI~~Wl~~~~~CPvCr~~l~~~~ 209 (213)
.++..|+||++.|.. .++++|||.|+..||.+|+....+||+||+.+..++
T Consensus 12 p~~~~CpI~~~~m~d---PV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~ 62 (85)
T 2kr4_A 12 PDEFRDPLMDTLMTD---PVRLPSGTVMDRSIILRHLLNSPTDPFNRQMLTESM 62 (85)
T ss_dssp CTTTBCTTTCSBCSS---EEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCGGG
T ss_pred chheECcccCchhcC---CeECCCCCEECHHHHHHHHhcCCCCCCCcCCCChHh
Confidence 456789999999876 678889999999999999999999999999886554
No 46
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=99.24 E-value=8.3e-13 Score=97.86 Aligned_cols=48 Identities=25% Similarity=0.553 Sum_probs=41.2
Q ss_pred CCCCccccccccccCCCCeEEcCcCCeechhHHHHHHhc-CCCccccccccc
Q 028139 156 EEEDVCPTCLEEYDAENPRIITKCEHHFHLACIFEWMER-SDTCPVCNQEMI 206 (213)
Q Consensus 156 ee~~~C~ICle~~~~~~~~~~l~CgH~Fh~~CI~~Wl~~-~~~CPvCr~~l~ 206 (213)
+++..|+||++.|.. .+.++|||.||..||..|++. +.+||+||+.+.
T Consensus 13 ~~~~~C~iC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 61 (115)
T 3l11_A 13 LSECQCGICMEILVE---PVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVS 61 (115)
T ss_dssp HHHHBCTTTCSBCSS---CEECTTSCEECHHHHCCCCCTTTSBCTTTCCBCH
T ss_pred CCCCCCccCCcccCc---eeEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccC
Confidence 445679999999864 567799999999999999976 678999999875
No 47
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.23 E-value=4.1e-12 Score=99.90 Aligned_cols=49 Identities=27% Similarity=0.735 Sum_probs=41.4
Q ss_pred CCCccccccccccCCCCeEEcCcCCeechhHHHHHHhc-CCCcccccccccC
Q 028139 157 EEDVCPTCLEEYDAENPRIITKCEHHFHLACIFEWMER-SDTCPVCNQEMIF 207 (213)
Q Consensus 157 e~~~C~ICle~~~~~~~~~~l~CgH~Fh~~CI~~Wl~~-~~~CPvCr~~l~~ 207 (213)
+...|+||++.|.. ++.+++|||.||..||..|++. +.+||+||+.+..
T Consensus 53 ~~~~C~IC~~~~~~--p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 102 (165)
T 2ckl_B 53 SELMCPICLDMLKN--TMTTKECLHRFCADCIITALRSGNKECPTCRKKLVS 102 (165)
T ss_dssp HHHBCTTTSSBCSS--EEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCS
T ss_pred CCCCCcccChHhhC--cCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCC
Confidence 34579999999865 4555699999999999999987 7889999998853
No 48
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=99.22 E-value=5.2e-12 Score=97.26 Aligned_cols=51 Identities=20% Similarity=0.560 Sum_probs=43.2
Q ss_pred CCCCccccccccccCCCCeEEcCcCCeechhHHHHHHhcCC-CcccccccccCCC
Q 028139 156 EEEDVCPTCLEEYDAENPRIITKCEHHFHLACIFEWMERSD-TCPVCNQEMIFDL 209 (213)
Q Consensus 156 ee~~~C~ICle~~~~~~~~~~l~CgH~Fh~~CI~~Wl~~~~-~CPvCr~~l~~~~ 209 (213)
+++..|+||++.|.. .+.++|||.||..||.+|++... +||+||+++.+++
T Consensus 29 ~~~~~C~IC~~~~~~---pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 80 (141)
T 3knv_A 29 EAKYLCSACRNVLRR---PFQAQCGHRYCSFCLASILSSGPQNCAACVHEGIYEE 80 (141)
T ss_dssp CGGGBCTTTCSBCSS---EEECTTSCEEEHHHHHHHGGGSCEECHHHHHTTCCCT
T ss_pred CcCcCCCCCChhhcC---cEECCCCCccCHHHHHHHHhcCCCCCCCCCCcccccc
Confidence 566789999999865 46789999999999999998765 8999999875543
No 49
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=99.21 E-value=9.4e-12 Score=86.43 Aligned_cols=54 Identities=20% Similarity=0.499 Sum_probs=41.5
Q ss_pred CCCCccccccccccCCCCeEE-cCcCCeechhHHHHHHhc-CCCcccccccccCCC
Q 028139 156 EEEDVCPTCLEEYDAENPRII-TKCEHHFHLACIFEWMER-SDTCPVCNQEMIFDL 209 (213)
Q Consensus 156 ee~~~C~ICle~~~~~~~~~~-l~CgH~Fh~~CI~~Wl~~-~~~CPvCr~~l~~~~ 209 (213)
+++..|+|||+.+...+..+. ++|||.||..||..|++. ...||+||+.+....
T Consensus 9 ~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~ 64 (78)
T 1e4u_A 9 EDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPEDP 64 (78)
T ss_dssp CCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCS
T ss_pred ccCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCCCc
Confidence 566789999999865433321 359999999999999843 578999999876544
No 50
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=99.21 E-value=1.3e-11 Score=89.36 Aligned_cols=52 Identities=12% Similarity=0.048 Sum_probs=45.8
Q ss_pred CCCCccccccccccCCCCeEEcCcC-CeechhHHHHHHhcCCCcccccccccCCCC
Q 028139 156 EEEDVCPTCLEEYDAENPRIITKCE-HHFHLACIFEWMERSDTCPVCNQEMIFDLP 210 (213)
Q Consensus 156 ee~~~C~ICle~~~~~~~~~~l~Cg-H~Fh~~CI~~Wl~~~~~CPvCr~~l~~~~~ 210 (213)
.++..|+||++.|.. +++++|| |.|+..||.+|+....+||+||+.+..++.
T Consensus 20 p~~~~CpI~~~~m~d---PV~~~cG~htf~r~cI~~~l~~~~~cP~~~~~l~~~~L 72 (98)
T 1wgm_A 20 CDEFLDPIMSTLMCD---PVVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTMDQI 72 (98)
T ss_dssp CTTTBCTTTCSBCSS---EEECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCCTTTS
T ss_pred cHhcCCcCccccccC---CeECCCCCeEECHHHHHHHHHhCCCCCCCCCCCChhhc
Confidence 456789999999876 6789999 999999999999999999999999876543
No 51
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=99.20 E-value=9.6e-12 Score=83.04 Aligned_cols=48 Identities=25% Similarity=0.506 Sum_probs=40.1
Q ss_pred CCCCccccccccccCCCCeEEc--CcCCe-echhHHHHHHhcCCCccccccccc
Q 028139 156 EEEDVCPTCLEEYDAENPRIIT--KCEHH-FHLACIFEWMERSDTCPVCNQEMI 206 (213)
Q Consensus 156 ee~~~C~ICle~~~~~~~~~~l--~CgH~-Fh~~CI~~Wl~~~~~CPvCr~~l~ 206 (213)
+++..|+||++.+.. .+.+ +|||. ||..|+..|++.+..||+||+.+.
T Consensus 6 ~~~~~C~IC~~~~~~---~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 56 (64)
T 2vje_A 6 NAIEPCVICQGRPKN---GCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQ 56 (64)
T ss_dssp GGGSCCTTTSSSCSC---EEEEETTEEEEEECHHHHHHHHHTTCCCTTTCCCCC
T ss_pred CCcCCCCcCCCCCCC---EEEECCCCCChhhHHHHHHHHHHcCCcCCCcCcchh
Confidence 345679999998654 4444 99999 899999999999999999999874
No 52
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.20 E-value=1.4e-11 Score=89.57 Aligned_cols=51 Identities=14% Similarity=0.040 Sum_probs=45.1
Q ss_pred CCCCccccccccccCCCCeEEcCcCCeechhHHHHHHhcCCCcccccccccCCC
Q 028139 156 EEEDVCPTCLEEYDAENPRIITKCEHHFHLACIFEWMERSDTCPVCNQEMIFDL 209 (213)
Q Consensus 156 ee~~~C~ICle~~~~~~~~~~l~CgH~Fh~~CI~~Wl~~~~~CPvCr~~l~~~~ 209 (213)
.++..|+||++.|.. +++++|||.|+..||.+|+....+||+||+++..++
T Consensus 27 p~~~~CpI~~~~m~d---PV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~ 77 (100)
T 2kre_A 27 PDEFRDPLMDTLMTD---PVRLPSGTIMDRSIILRHLLNSPTDPFNRQTLTESM 77 (100)
T ss_dssp STTTBCTTTCSBCSS---EEEETTTEEEEHHHHHHHTTSCSBCSSSCCBCCTTS
T ss_pred cHhhCCcCccCcccC---CeECCCCCEEchHHHHHHHHcCCCCCCCCCCCChhh
Confidence 456789999999876 677889999999999999998999999999987654
No 53
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.20 E-value=2.6e-12 Score=83.51 Aligned_cols=48 Identities=19% Similarity=0.407 Sum_probs=40.4
Q ss_pred CCCCccccccccccCCCCeEEcCcCCeechhHHHHHHhcCCCcccccccccCCC
Q 028139 156 EEEDVCPTCLEEYDAENPRIITKCEHHFHLACIFEWMERSDTCPVCNQEMIFDL 209 (213)
Q Consensus 156 ee~~~C~ICle~~~~~~~~~~l~CgH~Fh~~CI~~Wl~~~~~CPvCr~~l~~~~ 209 (213)
++...|+||++.|.. .++++|||.||..||..| ...||+||+.+...+
T Consensus 4 ~~~~~C~IC~~~~~~---p~~l~CgH~fC~~Ci~~~---~~~CP~Cr~~~~~~~ 51 (56)
T 1bor_A 4 FQFLRCQQCQAEAKC---PKLLPCLHTLCSGCLEAS---GMQCPICQAPWPLGA 51 (56)
T ss_dssp CCCSSCSSSCSSCBC---CSCSTTSCCSBTTTCSSS---SSSCSSCCSSSSCCS
T ss_pred ccCCCceEeCCccCC---eEEcCCCCcccHHHHccC---CCCCCcCCcEeecCC
Confidence 456689999999875 467899999999999885 678999999987654
No 54
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=99.13 E-value=3.1e-11 Score=80.25 Aligned_cols=48 Identities=19% Similarity=0.433 Sum_probs=39.7
Q ss_pred CCCCccccccccccCCCCeEEc--CcCCe-echhHHHHHHhcCCCccccccccc
Q 028139 156 EEEDVCPTCLEEYDAENPRIIT--KCEHH-FHLACIFEWMERSDTCPVCNQEMI 206 (213)
Q Consensus 156 ee~~~C~ICle~~~~~~~~~~l--~CgH~-Fh~~CI~~Wl~~~~~CPvCr~~l~ 206 (213)
+....|.||++.... ..++ +|||. ||..|+..|.+.+..||+||+.+.
T Consensus 5 ~~~~~C~IC~~~~~~---~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 55 (63)
T 2vje_B 5 NLLKPCSLCEKRPRD---GNIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQ 55 (63)
T ss_dssp GGGSBCTTTSSSBSC---EEEEETTEEEEEECHHHHHHHHHTTCBCTTTCCBCC
T ss_pred CcCCCCcccCCcCCC---eEEEecCCCCHhHHHHHHHHHHHhCCcCCCcCchhh
Confidence 345679999997643 3344 99998 999999999999999999999873
No 55
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.12 E-value=9.9e-12 Score=92.43 Aligned_cols=49 Identities=24% Similarity=0.533 Sum_probs=40.6
Q ss_pred CCCCccccccccccCCCCeEEc-CcCCeechhHHHHHHhcCCCcccccccccCCC
Q 028139 156 EEEDVCPTCLEEYDAENPRIIT-KCEHHFHLACIFEWMERSDTCPVCNQEMIFDL 209 (213)
Q Consensus 156 ee~~~C~ICle~~~~~~~~~~l-~CgH~Fh~~CI~~Wl~~~~~CPvCr~~l~~~~ 209 (213)
++...|+||++.|.. .+.+ +|||.||..||..|++ ..||+||+.+...+
T Consensus 20 ~~~~~C~IC~~~~~~---pv~~~~CgH~fC~~Ci~~~~~--~~CP~Cr~~~~~~~ 69 (117)
T 1jm7_B 20 EKLLRCSRCTNILRE---PVCLGGCEHIFCSNCVSDCIG--TGCPVCYTPAWIQD 69 (117)
T ss_dssp HHTTSCSSSCSCCSS---CBCCCSSSCCBCTTTGGGGTT--TBCSSSCCBCSCSS
T ss_pred hhCCCCCCCChHhhC---ccEeCCCCCHHHHHHHHHHhc--CCCcCCCCcCcccc
Confidence 345779999999854 4455 9999999999999998 78999999886543
No 56
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=99.08 E-value=5.3e-11 Score=105.27 Aligned_cols=49 Identities=27% Similarity=0.611 Sum_probs=42.5
Q ss_pred CCccccccccccCCCCeEEcCcCCeechhHHHHHHh-cCCCcccccccccCCC
Q 028139 158 EDVCPTCLEEYDAENPRIITKCEHHFHLACIFEWME-RSDTCPVCNQEMIFDL 209 (213)
Q Consensus 158 ~~~C~ICle~~~~~~~~~~l~CgH~Fh~~CI~~Wl~-~~~~CPvCr~~l~~~~ 209 (213)
...|+||++.+.. ++.++|||.||..||..|++ .+.+||+||+.+....
T Consensus 332 ~~~C~ICle~~~~---pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~~ 381 (389)
T 2y1n_A 332 FQLCKICAENDKD---VKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGTE 381 (389)
T ss_dssp SSBCTTTSSSBCC---EEEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCEEE
T ss_pred CCCCCccCcCCCC---eEEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCCce
Confidence 4579999998854 67899999999999999998 7889999999876543
No 57
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=99.08 E-value=2e-11 Score=83.75 Aligned_cols=44 Identities=30% Similarity=0.692 Sum_probs=37.7
Q ss_pred CCCccccccccccCCCCeEEcCcCCe-echhHHHHHHhcCCCcccccccccC
Q 028139 157 EEDVCPTCLEEYDAENPRIITKCEHH-FHLACIFEWMERSDTCPVCNQEMIF 207 (213)
Q Consensus 157 e~~~C~ICle~~~~~~~~~~l~CgH~-Fh~~CI~~Wl~~~~~CPvCr~~l~~ 207 (213)
++..|+||++.+.. .+.++|||. ||..||..| ..||+||+.+..
T Consensus 23 ~~~~C~iC~~~~~~---~~~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 23 EEKLCKICMDRNIA---IVFVPCGHLVTCKQCAEAV----DKCPMCYTVITF 67 (74)
T ss_dssp HHTBCTTTSSSBCC---EEEETTCCBCCCHHHHTTC----SBCTTTCCBCSE
T ss_pred cCCCCCCCCCCCCC---EEEcCCCChhHHHHhhhcC----ccCCCcCcCccC
Confidence 44679999998755 678899999 999999999 889999998753
No 58
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.05 E-value=6.7e-11 Score=84.78 Aligned_cols=49 Identities=22% Similarity=0.485 Sum_probs=40.0
Q ss_pred CCCCccccccccccCCCCeEEc-CcCCeechhHHHHHHhcC------CCccc--cccc-ccC
Q 028139 156 EEEDVCPTCLEEYDAENPRIIT-KCEHHFHLACIFEWMERS------DTCPV--CNQE-MIF 207 (213)
Q Consensus 156 ee~~~C~ICle~~~~~~~~~~l-~CgH~Fh~~CI~~Wl~~~------~~CPv--Cr~~-l~~ 207 (213)
.++..|+||++.|.. ++++ .|||.|+..||.+|+..+ .+||+ |++. +..
T Consensus 5 ~~~~~CPI~~~~~~d---PV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~ 63 (94)
T 2yu4_A 5 SSGFTCPITKEEMKK---PVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRK 63 (94)
T ss_dssp SSCCBCTTTCSBCSS---EEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCG
T ss_pred CcEeECcCcCchhcC---CEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCH
Confidence 566789999999865 5566 599999999999999764 48999 9876 543
No 59
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=99.04 E-value=8.4e-11 Score=92.73 Aligned_cols=51 Identities=31% Similarity=0.657 Sum_probs=43.1
Q ss_pred CCCCccccccccccCCCCeEEcCcCCeechhHHHHHHhcCC-CcccccccccCCC
Q 028139 156 EEEDVCPTCLEEYDAENPRIITKCEHHFHLACIFEWMERSD-TCPVCNQEMIFDL 209 (213)
Q Consensus 156 ee~~~C~ICle~~~~~~~~~~l~CgH~Fh~~CI~~Wl~~~~-~CPvCr~~l~~~~ 209 (213)
++...|+||++.|.. .+.++|||.||..||.+|++.+. +||+||+.+..++
T Consensus 16 ~~~~~C~IC~~~~~~---pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 67 (170)
T 3hcs_A 16 ESKYECPICLMALRE---AVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQ 67 (170)
T ss_dssp CGGGBCTTTCSBCSS---EEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGG
T ss_pred CCCCCCCCCChhhcC---cEECCCCCHHHHHHHHHHHHhCCCCCCCCccCcchhh
Confidence 566789999999865 56789999999999999998754 9999999886543
No 60
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.98 E-value=2.6e-10 Score=95.68 Aligned_cols=51 Identities=16% Similarity=0.092 Sum_probs=43.0
Q ss_pred CCCCccccccccccCCCCeEEcCcCCeechhHHHHHHhcC-CCcccccccccCCC
Q 028139 156 EEEDVCPTCLEEYDAENPRIITKCEHHFHLACIFEWMERS-DTCPVCNQEMIFDL 209 (213)
Q Consensus 156 ee~~~C~ICle~~~~~~~~~~l~CgH~Fh~~CI~~Wl~~~-~~CPvCr~~l~~~~ 209 (213)
.+...|+||++.|.. +++++|||.||..||..|+..+ .+||+||+++..++
T Consensus 206 ~~~~~c~i~~~~~~d---Pv~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~~~ 257 (281)
T 2c2l_A 206 PDYLCGKISFELMRE---PCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQ 257 (281)
T ss_dssp CSTTBCTTTCSBCSS---EEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGGG
T ss_pred CcccCCcCcCCHhcC---CeECCCCCEECHHHHHHHHHHCCCCCcCCCCCCchhc
Confidence 356789999999876 6788999999999999999875 45999999886543
No 61
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=98.94 E-value=6e-10 Score=73.39 Aligned_cols=49 Identities=29% Similarity=0.659 Sum_probs=39.1
Q ss_pred CCCCccccccccccCCCCeEEcCcC--C---eechhHHHHHHhc--CCCcccccccccC
Q 028139 156 EEEDVCPTCLEEYDAENPRIITKCE--H---HFHLACIFEWMER--SDTCPVCNQEMIF 207 (213)
Q Consensus 156 ee~~~C~ICle~~~~~~~~~~l~Cg--H---~Fh~~CI~~Wl~~--~~~CPvCr~~l~~ 207 (213)
+++..|.||+++. ++++ ++||. | .||..||.+|+.. +.+||+|+..+.+
T Consensus 4 ~~~~~CrIC~~~~--~~~l-~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~~ 59 (60)
T 1vyx_A 4 EDVPVCWICNEEL--GNER-FRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYNT 59 (60)
T ss_dssp CSCCEETTTTEEC--SCCC-CCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCCC
T ss_pred CCCCEeEEeecCC--CCce-ecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeeec
Confidence 5667899999984 3334 68865 4 9999999999965 5789999998865
No 62
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=98.92 E-value=2e-10 Score=99.51 Aligned_cols=51 Identities=25% Similarity=0.563 Sum_probs=39.5
Q ss_pred CCCCccccccccccC-CCCe----EEcCcCCeechhHHHHHHhcC-----------CCccccccccc
Q 028139 156 EEEDVCPTCLEEYDA-ENPR----IITKCEHHFHLACIFEWMERS-----------DTCPVCNQEMI 206 (213)
Q Consensus 156 ee~~~C~ICle~~~~-~~~~----~~l~CgH~Fh~~CI~~Wl~~~-----------~~CPvCr~~l~ 206 (213)
++...|+||++.+.. +.-. ...+|||.||..||.+||+.. ++||+||++|.
T Consensus 306 e~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs 372 (381)
T 3k1l_B 306 NEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLS 372 (381)
T ss_dssp CSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEE
T ss_pred cCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCC
Confidence 455579999999865 2211 125799999999999999763 57999999874
No 63
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.90 E-value=3e-10 Score=77.83 Aligned_cols=44 Identities=27% Similarity=0.680 Sum_probs=36.1
Q ss_pred CCccccccccccCCCCeEEcCcCCe-echhHHHHHHhcCCCcccccccccCC
Q 028139 158 EDVCPTCLEEYDAENPRIITKCEHH-FHLACIFEWMERSDTCPVCNQEMIFD 208 (213)
Q Consensus 158 ~~~C~ICle~~~~~~~~~~l~CgH~-Fh~~CI~~Wl~~~~~CPvCr~~l~~~ 208 (213)
+..|+||++.+.. .+.++|||. ||..|+.. ...||+||+.+...
T Consensus 25 ~~~C~IC~~~~~~---~~~~pCgH~~~C~~C~~~----~~~CP~Cr~~i~~~ 69 (75)
T 2ecg_A 25 EKLCKICMDRNIA---IVFVPCGHLVTCKQCAEA----VDKCPMCYTVITFK 69 (75)
T ss_dssp HHSCSSSCSSCCC---BCCSSSCCCCBCHHHHHH----CSBCTTTCCBCCCC
T ss_pred CCCCCcCCCCCCC---EEEecCCCHHHHHHHhhC----CCCCccCCceecCc
Confidence 3569999998754 667899999 99999964 47899999987543
No 64
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.87 E-value=1.5e-09 Score=73.12 Aligned_cols=45 Identities=22% Similarity=0.504 Sum_probs=37.4
Q ss_pred CCCCccccccccccCCCCeEEcCcCCe-echhHHHHHHhcCCCcccccccccC
Q 028139 156 EEEDVCPTCLEEYDAENPRIITKCEHH-FHLACIFEWMERSDTCPVCNQEMIF 207 (213)
Q Consensus 156 ee~~~C~ICle~~~~~~~~~~l~CgH~-Fh~~CI~~Wl~~~~~CPvCr~~l~~ 207 (213)
++...|.|||+.+.. .++++|||. ||..|+.. ...||+||+.+..
T Consensus 13 ~~~~~C~IC~~~~~~---~v~~pCgH~~~C~~C~~~----~~~CP~CR~~i~~ 58 (68)
T 2ea5_A 13 ENSKDCVVCQNGTVN---WVLLPCRHTCLCDGCVKY----FQQCPMCRQFVQE 58 (68)
T ss_dssp CCSSCCSSSSSSCCC---CEETTTTBCCSCTTHHHH----CSSCTTTCCCCCC
T ss_pred CCCCCCCCcCcCCCC---EEEECCCChhhhHHHHhc----CCCCCCCCcchhc
Confidence 456679999997654 778999999 99999984 5789999998743
No 65
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.87 E-value=1.2e-09 Score=87.23 Aligned_cols=51 Identities=18% Similarity=0.096 Sum_probs=43.7
Q ss_pred CCCCccccccccccCCCCeEEcCcCCeechhHHHHHHhcC-CCcccccccccCCC
Q 028139 156 EEEDVCPTCLEEYDAENPRIITKCEHHFHLACIFEWMERS-DTCPVCNQEMIFDL 209 (213)
Q Consensus 156 ee~~~C~ICle~~~~~~~~~~l~CgH~Fh~~CI~~Wl~~~-~~CPvCr~~l~~~~ 209 (213)
.+...||||++.|.. +++++|||.|+..||..|+..+ .+||+|+.++...+
T Consensus 104 p~~f~CPI~~elm~D---PV~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~~ 155 (179)
T 2f42_A 104 PDYLCGKISFELMRE---PCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQ 155 (179)
T ss_dssp CGGGBCTTTCSBCSS---EEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGG
T ss_pred cHhhcccCccccCCC---CeECCCCCEECHHHHHHHHHhCCCCCCCCcCCCChhh
Confidence 466789999999876 6788999999999999999874 46999999886654
No 66
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.82 E-value=1.8e-09 Score=71.34 Aligned_cols=49 Identities=12% Similarity=0.292 Sum_probs=42.7
Q ss_pred CccccccccccCCCCeEEc-CcCCeechhHHHHHHhcCCCcccccccccCCCC
Q 028139 159 DVCPTCLEEYDAENPRIIT-KCEHHFHLACIFEWMERSDTCPVCNQEMIFDLP 210 (213)
Q Consensus 159 ~~C~ICle~~~~~~~~~~l-~CgH~Fh~~CI~~Wl~~~~~CPvCr~~l~~~~~ 210 (213)
..|+|+++.+.. + +++ ++||.|...||.+||+.+++||+.+++|..++.
T Consensus 4 ~~CpIs~~~m~d--P-V~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~~~~L 53 (61)
T 2bay_A 4 MLCAISGKVPRR--P-VLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIEEI 53 (61)
T ss_dssp CCCTTTCSCCSS--E-EEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCGGGC
T ss_pred EEecCCCCCCCC--C-EEeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCChhhc
Confidence 579999999864 4 555 899999999999999998999999999977664
No 67
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.81 E-value=6.8e-10 Score=77.07 Aligned_cols=43 Identities=28% Similarity=0.614 Sum_probs=36.3
Q ss_pred CCCccccccccccCCCCeEEcCcCCe-echhHHHHHHhcCCCccccccccc
Q 028139 157 EEDVCPTCLEEYDAENPRIITKCEHH-FHLACIFEWMERSDTCPVCNQEMI 206 (213)
Q Consensus 157 e~~~C~ICle~~~~~~~~~~l~CgH~-Fh~~CI~~Wl~~~~~CPvCr~~l~ 206 (213)
++..|+||++.+.. .+.++|||. ||..|+..| ..||+||+.+.
T Consensus 17 ~~~~C~IC~~~~~~---~v~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~ 60 (79)
T 2yho_A 17 EAMLCMVCCEEEIN---STFCPCGHTVCCESCAAQL----QSCPVCRSRVE 60 (79)
T ss_dssp HHTBCTTTSSSBCC---EEEETTCBCCBCHHHHTTC----SBCTTTCCBCC
T ss_pred CCCEeEEeCcccCc---EEEECCCCHHHHHHHHHhc----CcCCCCCchhh
Confidence 34569999998754 778999999 999999987 38999999764
No 68
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.80 E-value=2.3e-09 Score=76.49 Aligned_cols=48 Identities=29% Similarity=0.675 Sum_probs=38.8
Q ss_pred CCCccccccccccCCCCeEEcCcCCeechhHHHHHHhcC--------CCccc--cccc
Q 028139 157 EEDVCPTCLEEYDAENPRIITKCEHHFHLACIFEWMERS--------DTCPV--CNQE 204 (213)
Q Consensus 157 e~~~C~ICle~~~~~~~~~~l~CgH~Fh~~CI~~Wl~~~--------~~CPv--Cr~~ 204 (213)
+...|+||++++.......+++|||.||..||..|++.+ -.||. |+..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 456799999998765544456899999999999999642 37999 9987
No 69
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.75 E-value=3.4e-09 Score=88.86 Aligned_cols=52 Identities=31% Similarity=0.601 Sum_probs=42.3
Q ss_pred CCCCccccccccccCCCCeEEcCcCCeechhHHHHHHhcC--CCccc--ccccccCCC
Q 028139 156 EEEDVCPTCLEEYDAENPRIITKCEHHFHLACIFEWMERS--DTCPV--CNQEMIFDL 209 (213)
Q Consensus 156 ee~~~C~ICle~~~~~~~~~~l~CgH~Fh~~CI~~Wl~~~--~~CPv--Cr~~l~~~~ 209 (213)
..+..||||++.|.. +++.+.|||.|+..||..|++.+ .+||+ |++.+...+
T Consensus 179 ~~el~CPIcl~~f~D--PVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~d 234 (267)
T 3htk_C 179 KIELTCPITCKPYEA--PLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMRD 234 (267)
T ss_dssp BCCSBCTTTSSBCSS--EEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGGG
T ss_pred ceeeECcCccCcccC--CeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCchhh
Confidence 455689999999854 56557999999999999999864 47999 999875543
No 70
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.63 E-value=6.9e-09 Score=90.77 Aligned_cols=44 Identities=23% Similarity=0.629 Sum_probs=38.0
Q ss_pred CCCCccccccccccCCCCeEEcCcCCe-echhHHHHHHhcCCCccccccccc
Q 028139 156 EEEDVCPTCLEEYDAENPRIITKCEHH-FHLACIFEWMERSDTCPVCNQEMI 206 (213)
Q Consensus 156 ee~~~C~ICle~~~~~~~~~~l~CgH~-Fh~~CI~~Wl~~~~~CPvCr~~l~ 206 (213)
+++..|+||++.+.. .+.++|||. ||..||..| ..||+||+.+.
T Consensus 293 ~~~~~C~IC~~~~~~---~v~lpCgH~~fC~~C~~~~----~~CP~CR~~i~ 337 (345)
T 3t6p_A 293 QEERTCKVCMDKEVS---VVFIPCGHLVVCQECAPSL----RKCPICRGIIK 337 (345)
T ss_dssp HTTCBCTTTSSSBCC---EEEETTCCEEECTTTGGGC----SBCTTTCCBCC
T ss_pred cCCCCCCccCCcCCc---eEEcCCCChhHhHHHHhcC----CcCCCCCCCcc
Confidence 345689999998865 678899999 999999998 78999999874
No 71
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=98.21 E-value=1e-06 Score=63.09 Aligned_cols=45 Identities=20% Similarity=0.521 Sum_probs=36.9
Q ss_pred ccccccccccCCCCeEEcCcCCeechhHHHHHHhc-CCCccccccccc
Q 028139 160 VCPTCLEEYDAENPRIITKCEHHFHLACIFEWMER-SDTCPVCNQEMI 206 (213)
Q Consensus 160 ~C~ICle~~~~~~~~~~l~CgH~Fh~~CI~~Wl~~-~~~CPvCr~~l~ 206 (213)
.|.+|--.+.. -.++.||.|.||.+|+..|.++ .++||+|+.++.
T Consensus 3 fC~~C~~Pi~i--ygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~ 48 (101)
T 3vk6_A 3 FCDKCGLPIKV--YGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQ 48 (101)
T ss_dssp BCTTTCSBCSE--EEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCS
T ss_pred ecCccCCCeEE--EeeeccccccHHHHHHHHHHhccCCCCcCcCCeee
Confidence 48888777644 3578999999999999999865 589999998763
No 72
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=98.11 E-value=2.8e-06 Score=70.51 Aligned_cols=52 Identities=21% Similarity=0.607 Sum_probs=42.4
Q ss_pred CCCccccccccccCCCCeEEcCcCCeechhHHHHHHhcCC--CcccccccccCCCC
Q 028139 157 EEDVCPTCLEEYDAENPRIITKCEHHFHLACIFEWMERSD--TCPVCNQEMIFDLP 210 (213)
Q Consensus 157 e~~~C~ICle~~~~~~~~~~l~CgH~Fh~~CI~~Wl~~~~--~CPvCr~~l~~~~~ 210 (213)
....|.||.+....+ .....|+|.||..|+..|++.+. .||.|+..+..+.|
T Consensus 179 ~i~~C~iC~~iv~~g--~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~~~~ 232 (238)
T 3nw0_A 179 AVKICNICHSLLIQG--QSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHEIP 232 (238)
T ss_dssp TCCBCTTTCSBCSSC--EECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCSCCC
T ss_pred CCCcCcchhhHHhCC--cccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCC
Confidence 456799999988764 55666999999999999997754 99999998766543
No 73
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=97.36 E-value=6.6e-05 Score=52.89 Aligned_cols=48 Identities=25% Similarity=0.668 Sum_probs=40.0
Q ss_pred CCCccccccccccCCCCeEEcCc-CCeechhHHHHHHhcCCCcccccccccCCC
Q 028139 157 EEDVCPTCLEEYDAENPRIITKC-EHHFHLACIFEWMERSDTCPVCNQEMIFDL 209 (213)
Q Consensus 157 e~~~C~ICle~~~~~~~~~~l~C-gH~Fh~~CI~~Wl~~~~~CPvCr~~l~~~~ 209 (213)
.-..|-.|+-+... +..| .|.+|+.|+...|.+++.||+|+++|.++=
T Consensus 27 G~~nCKsCWf~~k~-----LV~C~dHYLCl~CLtlmL~~SdrCpIC~~pLPtkl 75 (99)
T 2ko5_A 27 GPQFCKSCWFENKG-----LVECNNHYLCLNCLTLLLSVSNRCPICKMPLPTKL 75 (99)
T ss_dssp CCCCCCSSCSCCSS-----EEECSSCEEEHHHHHHTCSSSSEETTTTEECCCCS
T ss_pred CcccChhhccccCC-----eeeecchhhHHHHHHHHHhhccCCcccCCcCCcce
Confidence 34569999987654 5556 699999999999999999999999987753
No 74
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=96.45 E-value=0.0018 Score=45.97 Aligned_cols=35 Identities=14% Similarity=0.379 Sum_probs=27.1
Q ss_pred CCccccccccccCCCCeEEcCcCCeechhHHHH-HH
Q 028139 158 EDVCPTCLEEYDAENPRIITKCEHHFHLACIFE-WM 192 (213)
Q Consensus 158 ~~~C~ICle~~~~~~~~~~l~CgH~Fh~~CI~~-Wl 192 (213)
+..|.||++.|...-....+.|+|.||..|+.. |.
T Consensus 3 e~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~h~ 38 (101)
T 2jun_A 3 KVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHP 38 (101)
T ss_dssp CCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHHSC
T ss_pred CCCCcCCCCCCCCCceEECCcCChHHhHHHCHHHhc
Confidence 467999998754433344599999999999998 53
No 75
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=94.32 E-value=0.041 Score=36.19 Aligned_cols=46 Identities=22% Similarity=0.464 Sum_probs=34.8
Q ss_pred CCCccccccccccCCCCeEEcCcCCeechhHHHHHHhcC----CCcccccccc
Q 028139 157 EEDVCPTCLEEYDAENPRIITKCEHHFHLACIFEWMERS----DTCPVCNQEM 205 (213)
Q Consensus 157 e~~~C~ICle~~~~~~~~~~l~CgH~Fh~~CI~~Wl~~~----~~CPvCr~~l 205 (213)
....|.||.+. ++-+..-.|...||..|+...|... =.||.|....
T Consensus 11 ~~~~C~vC~~~---~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~ 60 (66)
T 2lri_C 11 PGARCGVCGDG---TDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDV 60 (66)
T ss_dssp TTCCCTTTSCC---TTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTCC
T ss_pred CCCCcCCCCCC---CeEEECCCCCCceecccCCCccCcCCCCCEECccccCCC
Confidence 34569999863 4556667799999999999888653 3699997654
No 76
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=93.03 E-value=0.034 Score=40.13 Aligned_cols=39 Identities=21% Similarity=0.330 Sum_probs=29.9
Q ss_pred cCCCCccccccccccCCCCeEEcCcCCeechhHHHHHHh
Q 028139 155 IEEEDVCPTCLEEYDAENPRIITKCEHHFHLACIFEWME 193 (213)
Q Consensus 155 ~ee~~~C~ICle~~~~~~~~~~l~CgH~Fh~~CI~~Wl~ 193 (213)
..+++.|.||.+.-+.++-+....|+..||..|+..++.
T Consensus 4 ~~~~~~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~~~~~ 42 (111)
T 2ysm_A 4 GSSGANCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAVT 42 (111)
T ss_dssp CCCCSCBTTTCCCCCTTTSEECSSSCCEECTTTTTCCCC
T ss_pred CCCCCCCcCCCCCCCCcCCeECCCCCCCcChHHhCCccc
Confidence 356788999998654333366678999999999988764
No 77
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=90.91 E-value=0.13 Score=31.64 Aligned_cols=44 Identities=23% Similarity=0.607 Sum_probs=31.1
Q ss_pred ccccccccccCCCCeEEcCcCCeechhHHHHHHhcC----CCcccccc
Q 028139 160 VCPTCLEEYDAENPRIITKCEHHFHLACIFEWMERS----DTCPVCNQ 203 (213)
Q Consensus 160 ~C~ICle~~~~~~~~~~l~CgH~Fh~~CI~~Wl~~~----~~CPvCr~ 203 (213)
.|.||...-..++-+..-.|...||..|+..=|... =.||.|+.
T Consensus 2 ~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCCSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCCCCEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 488998765444556667799999999997544332 24999965
No 78
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=90.48 E-value=0.12 Score=33.18 Aligned_cols=46 Identities=26% Similarity=0.707 Sum_probs=33.1
Q ss_pred CCCCccccccccccCCCCeEEcCcCCeechhHHHHHHhc----CCCccccccc
Q 028139 156 EEEDVCPTCLEEYDAENPRIITKCEHHFHLACIFEWMER----SDTCPVCNQE 204 (213)
Q Consensus 156 ee~~~C~ICle~~~~~~~~~~l~CgH~Fh~~CI~~Wl~~----~~~CPvCr~~ 204 (213)
..++.|.||... ++-+..-.|...||..|+..-|.. .=.||.|++.
T Consensus 9 ~~~~~C~vC~~~---g~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~~ 58 (61)
T 2l5u_A 9 DHQDYCEVCQQG---GEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEKE 58 (61)
T ss_dssp CCCSSCTTTSCC---SSEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGGG
T ss_pred CCCCCCccCCCC---CcEEECCCCChhhhhhccCCCCCCCCCCceECcccccc
Confidence 456789999873 344555668899999999986543 2359999753
No 79
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=89.84 E-value=0.045 Score=34.63 Aligned_cols=46 Identities=24% Similarity=0.591 Sum_probs=33.0
Q ss_pred cCCCCccccccccccCCCCeEEcCcCCeechhHHHHHHhcC----CCcccccc
Q 028139 155 IEEEDVCPTCLEEYDAENPRIITKCEHHFHLACIFEWMERS----DTCPVCNQ 203 (213)
Q Consensus 155 ~ee~~~C~ICle~~~~~~~~~~l~CgH~Fh~~CI~~Wl~~~----~~CPvCr~ 203 (213)
+.+++.|.||... ++-+..-.|...||..|+.+-|... =.||.|..
T Consensus 6 ~~~~~~C~vC~~~---g~ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 6 SGHEDFCSVCRKS---GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp CSSCCSCSSSCCS---SCCEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred CCCCCCCccCCCC---CeEEEcCCCCcceECccCCCCcCCCCCCceEChhhhC
Confidence 3566789999874 4445667789999999998655432 24888854
No 80
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=89.64 E-value=0.074 Score=35.53 Aligned_cols=51 Identities=20% Similarity=0.453 Sum_probs=34.9
Q ss_pred CCCCccccccccccCCCCeEEcCcCCeechhHHHHHHhc----CCCccccccccc
Q 028139 156 EEEDVCPTCLEEYDAENPRIITKCEHHFHLACIFEWMER----SDTCPVCNQEMI 206 (213)
Q Consensus 156 ee~~~C~ICle~~~~~~~~~~l~CgH~Fh~~CI~~Wl~~----~~~CPvCr~~l~ 206 (213)
++...|.||......+.-+..-.|.--||..|+..-+.. .-.||.|+..+.
T Consensus 16 ~~~~~C~~C~~~~~~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~ 70 (75)
T 2k16_A 16 NQIWICPGCNKPDDGSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIK 70 (75)
T ss_dssp CEEECBTTTTBCCSSCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHC
T ss_pred CCCcCCCCCCCCCCCCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCchh
Confidence 344579999887654333444568899999999765532 235999977653
No 81
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=89.56 E-value=0.086 Score=34.47 Aligned_cols=48 Identities=27% Similarity=0.562 Sum_probs=34.3
Q ss_pred CCCCccccccccccCCCCeEEcCcCCeechhHHHHHHhcC----CCccccccccc
Q 028139 156 EEEDVCPTCLEEYDAENPRIITKCEHHFHLACIFEWMERS----DTCPVCNQEMI 206 (213)
Q Consensus 156 ee~~~C~ICle~~~~~~~~~~l~CgH~Fh~~CI~~Wl~~~----~~CPvCr~~l~ 206 (213)
.+++.|.||.+. ++-+..-.|...||..|+.+-|... =.||.|...-.
T Consensus 6 ~~~~~C~vC~~~---g~ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~~~~ 57 (66)
T 1xwh_A 6 KNEDECAVCRDG---GELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQATV 57 (66)
T ss_dssp SCCCSBSSSSCC---SSCEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHHTCC
T ss_pred CCCCCCccCCCC---CCEEEcCCCChhhcccccCCCcCcCCCCCeECccccCccc
Confidence 456789999874 4445566789999999998655432 25999976443
No 82
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=89.44 E-value=0.073 Score=34.28 Aligned_cols=47 Identities=17% Similarity=0.471 Sum_probs=33.3
Q ss_pred CCCCccccccccccCCCCeEEcCcCCeechhHHHHHHhcC----CCcccccccc
Q 028139 156 EEEDVCPTCLEEYDAENPRIITKCEHHFHLACIFEWMERS----DTCPVCNQEM 205 (213)
Q Consensus 156 ee~~~C~ICle~~~~~~~~~~l~CgH~Fh~~CI~~Wl~~~----~~CPvCr~~l 205 (213)
..++.|.||.+. ++-+..-.|...||..|+..-|... =.||.|+...
T Consensus 7 ~~~~~C~vC~~~---g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~ 57 (61)
T 1mm2_A 7 HHMEFCRVCKDG---GELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPA 57 (61)
T ss_dssp SSCSSCTTTCCC---SSCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTTC
T ss_pred CCCCcCCCCCCC---CCEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCch
Confidence 456779999863 3445556688999999998655432 2599997654
No 83
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=89.04 E-value=0.28 Score=33.70 Aligned_cols=34 Identities=26% Similarity=0.606 Sum_probs=24.1
Q ss_pred CCCccccccccccCCCCeEEcCcCCeechhHHHHH
Q 028139 157 EEDVCPTCLEEYDAENPRIITKCEHHFHLACIFEW 191 (213)
Q Consensus 157 e~~~C~ICle~~~~~~~~~~l~CgH~Fh~~CI~~W 191 (213)
.++.|.|| +.|..+...-.--|+-.||..|+.+-
T Consensus 14 ~D~~C~VC-~~~t~~~l~pCRvC~RvfH~~CL~r~ 47 (89)
T 1wil_A 14 NDEMCDVC-EVWTAESLFPCRVCTRVFHDGCLRRM 47 (89)
T ss_dssp CSCCCTTT-CCCCSSCCSSCSSSSSCCCHHHHHHH
T ss_pred CCcccCcc-ccccccceeccccccccccHhhcccc
Confidence 45679999 45655443323338999999999995
No 84
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=88.62 E-value=0.34 Score=47.22 Aligned_cols=51 Identities=12% Similarity=0.089 Sum_probs=43.4
Q ss_pred CCCCccccccccccCCCCeEEcCcC-CeechhHHHHHHhcCCCcccccccccCCC
Q 028139 156 EEEDVCPTCLEEYDAENPRIITKCE-HHFHLACIFEWMERSDTCPVCNQEMIFDL 209 (213)
Q Consensus 156 ee~~~C~ICle~~~~~~~~~~l~Cg-H~Fh~~CI~~Wl~~~~~CPvCr~~l~~~~ 209 (213)
-++..|||=++-+.. +++++-| +.|-...|.+||....+||+=|+++..++
T Consensus 889 P~~F~cPIs~~lM~D---PVilpsG~~TydR~~I~~wl~~~~tdP~Tr~~L~~~~ 940 (968)
T 3m62_A 889 PDEFLDPLMYTIMKD---PVILPASKMNIDRSTIKAHLLSDSTDPFNRMPLKLED 940 (968)
T ss_dssp CGGGBCTTTCSBCSS---EEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCGGG
T ss_pred cHHhCCcchhhHHhC---CeEcCCCCEEECHHHHHHHHhcCCCCCCCCCCCCccc
Confidence 355789999998866 6788887 68999999999999999999999887554
No 85
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=88.46 E-value=0.055 Score=34.67 Aligned_cols=48 Identities=25% Similarity=0.627 Sum_probs=34.5
Q ss_pred CCCCccccccccccCCCCeEEcCcCCeechhHHHHHHhcC----CCccccccccc
Q 028139 156 EEEDVCPTCLEEYDAENPRIITKCEHHFHLACIFEWMERS----DTCPVCNQEMI 206 (213)
Q Consensus 156 ee~~~C~ICle~~~~~~~~~~l~CgH~Fh~~CI~~Wl~~~----~~CPvCr~~l~ 206 (213)
..++.|.||... ++-+..-.|.-.||..|+.+-|... =.||.|...+.
T Consensus 3 ~~~~~C~vC~~~---g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~~ 54 (60)
T 2puy_A 3 IHEDFCSVCRKS---GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQML 54 (60)
T ss_dssp CCCSSCTTTCCC---SSCEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHHHHH
T ss_pred CCCCCCcCCCCC---CcEEEcCCCCcCEECCcCCCCcCCCCCCceEChhccChhh
Confidence 356779999874 4556667799999999998655432 35999976554
No 86
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=87.90 E-value=0.11 Score=33.54 Aligned_cols=50 Identities=26% Similarity=0.482 Sum_probs=34.1
Q ss_pred cCCCCccccccccccCC-CCeEEcCcCCeechhHHHHHHh-----cCCCccccccc
Q 028139 155 IEEEDVCPTCLEEYDAE-NPRIITKCEHHFHLACIFEWME-----RSDTCPVCNQE 204 (213)
Q Consensus 155 ~ee~~~C~ICle~~~~~-~~~~~l~CgH~Fh~~CI~~Wl~-----~~~~CPvCr~~ 204 (213)
+++...|+||...+..+ .-+..-.|..=||..|+.--.. ..-.||.|+..
T Consensus 3 ~~e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k 58 (64)
T 1we9_A 3 SGSSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNK 58 (64)
T ss_dssp CSSCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTT
T ss_pred CCCCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcCc
Confidence 35667899999988543 3233456888999999865332 23469999653
No 87
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=87.76 E-value=0.34 Score=33.64 Aligned_cols=51 Identities=20% Similarity=0.520 Sum_probs=36.2
Q ss_pred cCCCCccccccccccCCCCeEEcCcCCeechhHHHHHHhcC----CCcccccccccCC
Q 028139 155 IEEEDVCPTCLEEYDAENPRIITKCEHHFHLACIFEWMERS----DTCPVCNQEMIFD 208 (213)
Q Consensus 155 ~ee~~~C~ICle~~~~~~~~~~l~CgH~Fh~~CI~~Wl~~~----~~CPvCr~~l~~~ 208 (213)
.+..+.|.||... ++-+..-.|.-.||..|+.+=|..- =.||.|+..-..+
T Consensus 22 d~n~~~C~vC~~~---g~LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~~~~k 76 (88)
T 1fp0_A 22 DDSATICRVCQKP---GDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVLPDLK 76 (88)
T ss_dssp SSSSSCCSSSCSS---SCCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCCCSSC
T ss_pred CCCCCcCcCcCCC---CCEEECCCCCCceecccCCCCCCCCcCCCcCCccccCCCccc
Confidence 3566789999974 4445566788999999998766442 3599998654433
No 88
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=87.18 E-value=0.055 Score=37.93 Aligned_cols=49 Identities=16% Similarity=0.521 Sum_probs=34.4
Q ss_pred CCCCccccccccccCCCCeEEcCcCCeechhHHHHHHhc----CCCccccccc
Q 028139 156 EEEDVCPTCLEEYDAENPRIITKCEHHFHLACIFEWMER----SDTCPVCNQE 204 (213)
Q Consensus 156 ee~~~C~ICle~~~~~~~~~~l~CgH~Fh~~CI~~Wl~~----~~~CPvCr~~ 204 (213)
.+...|.||...-..+.-+..-.|...||..|+.+=|.. .=.||.|...
T Consensus 14 ~~~~~C~vC~~~~~~~~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~ 66 (92)
T 2e6r_A 14 IDSYICQVCSRGDEDDKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCILA 66 (92)
T ss_dssp CCCCCCSSSCCSGGGGGCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHHH
T ss_pred cCCCCCccCCCcCCCCCEEEcCCCCchhccccCCCCcccCCCCCcCCccCcCc
Confidence 455679999986544445556679999999999754433 2249999653
No 89
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=84.59 E-value=1.7 Score=31.16 Aligned_cols=32 Identities=22% Similarity=0.449 Sum_probs=23.9
Q ss_pred CCccccccccc------cCCCCeEEcCcCCeechhHHH
Q 028139 158 EDVCPTCLEEY------DAENPRIITKCEHHFHLACIF 189 (213)
Q Consensus 158 ~~~C~ICle~~------~~~~~~~~l~CgH~Fh~~CI~ 189 (213)
...|.+|+..- ..++-+....|+..||..||.
T Consensus 5 ~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~ 42 (112)
T 3v43_A 5 IPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLK 42 (112)
T ss_dssp CSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHT
T ss_pred CccccccCCchhhCcCCCchhceEhhhcCCCCCCchhc
Confidence 46799999752 233445567799999999995
No 90
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=84.24 E-value=0.44 Score=30.74 Aligned_cols=51 Identities=25% Similarity=0.533 Sum_probs=34.6
Q ss_pred CCCCccccccccccC--CCCeEEcCcCCeechhHHHHHHh-------cCCCccccccccc
Q 028139 156 EEEDVCPTCLEEYDA--ENPRIITKCEHHFHLACIFEWME-------RSDTCPVCNQEMI 206 (213)
Q Consensus 156 ee~~~C~ICle~~~~--~~~~~~l~CgH~Fh~~CI~~Wl~-------~~~~CPvCr~~l~ 206 (213)
.++..|.||...... +.-+..-.|.-.||..|+..-|. ..=.|+.|.....
T Consensus 4 ~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~~~ 63 (66)
T 2yt5_A 4 GSSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFATT 63 (66)
T ss_dssp CCCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHTTS
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCccc
Confidence 456789999987532 33344466899999999886442 1235998876543
No 91
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=84.07 E-value=1.4 Score=33.31 Aligned_cols=48 Identities=23% Similarity=0.433 Sum_probs=34.4
Q ss_pred ccCCCCccccccccccCCCCeEEcCcCCeechhHHHHHHh---------c--CCCccccccc
Q 028139 154 VIEEEDVCPTCLEEYDAENPRIITKCEHHFHLACIFEWME---------R--SDTCPVCNQE 204 (213)
Q Consensus 154 ~~ee~~~C~ICle~~~~~~~~~~l~CgH~Fh~~CI~~Wl~---------~--~~~CPvCr~~ 204 (213)
.+..++.|.||-+. ++-+..-.|-..||..||.+=|. . .=.||+|+..
T Consensus 59 ~Dg~~d~C~vC~~G---G~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~~ 117 (142)
T 2lbm_A 59 SDGMDEQCRWCAEG---GNLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHPE 117 (142)
T ss_dssp TTSCBCSCSSSCCC---SSEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCCC
T ss_pred CCCCCCeecccCCC---CcEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccCc
Confidence 34566789999984 44355566899999999997653 1 2359999753
No 92
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=82.50 E-value=0.72 Score=31.41 Aligned_cols=38 Identities=18% Similarity=0.315 Sum_probs=27.9
Q ss_pred CCCccccccccccCCCCeEEcC-cCCeechhHHHHHHhc
Q 028139 157 EEDVCPTCLEEYDAENPRIITK-CEHHFHLACIFEWMER 194 (213)
Q Consensus 157 e~~~C~ICle~~~~~~~~~~l~-CgH~Fh~~CI~~Wl~~ 194 (213)
....|.+|.|.++..+-+.... =+|.||.-|-+..+++
T Consensus 14 a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sIk~ 52 (93)
T 2cs3_A 14 GPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIKA 52 (93)
T ss_dssp CSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHHH
T ss_pred CeeEeecchhhhccCceeeCCCccCCeeeccccHHHHHh
Confidence 4467999999987654332111 2799999999999976
No 93
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=82.27 E-value=0.95 Score=39.47 Aligned_cols=48 Identities=21% Similarity=0.495 Sum_probs=34.9
Q ss_pred ccccccccccCCCCeEEcCcCCe--echhHHHHHHhcC--CCcccccccccCCC
Q 028139 160 VCPTCLEEYDAENPRIITKCEHH--FHLACIFEWMERS--DTCPVCNQEMIFDL 209 (213)
Q Consensus 160 ~C~ICle~~~~~~~~~~l~CgH~--Fh~~CI~~Wl~~~--~~CPvCr~~l~~~~ 209 (213)
.|||=+..+ ..++.-..|.|. |-+.=+....++. -.||+|.+.+.+++
T Consensus 251 ~CPlS~~ri--~~PvRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~~~d 302 (371)
T 3i2d_A 251 QCPISYTRM--KYPSKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIALEN 302 (371)
T ss_dssp BCTTTSSBC--SSEEEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCCGGG
T ss_pred cCCCccccc--cccCcCCcCCCcceECHHHHHHHhhcCCceeCCCCCcccCHHH
Confidence 788877765 447888899998 6665565555443 46999999886654
No 94
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=81.76 E-value=1.6 Score=32.07 Aligned_cols=41 Identities=17% Similarity=0.255 Sum_probs=29.4
Q ss_pred cccccCCCCccccccccccCCCC-eEEcCcCCeechhHHHHH
Q 028139 151 VVAVIEEEDVCPTCLEEYDAENP-RIITKCEHHFHLACIFEW 191 (213)
Q Consensus 151 ~~~~~ee~~~C~ICle~~~~~~~-~~~l~CgH~Fh~~CI~~W 191 (213)
.+..+.+...|.+|...|..-.. -..-.||++||..|....
T Consensus 62 ~W~~d~~~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~~ 103 (125)
T 1joc_A 62 KWAEDNEVQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAKN 103 (125)
T ss_dssp CCCCGGGCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEE
T ss_pred ccccCCCCCCCcCcCCccccccccccCCCCCeEEChHHhCCc
Confidence 34444566789999999975432 344669999999996654
No 95
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=81.63 E-value=1.2 Score=38.65 Aligned_cols=48 Identities=25% Similarity=0.551 Sum_probs=35.9
Q ss_pred ccccccccccCCCCeEEcCcCCe--echhHHHHHHhcC--CCcccccccccCCC
Q 028139 160 VCPTCLEEYDAENPRIITKCEHH--FHLACIFEWMERS--DTCPVCNQEMIFDL 209 (213)
Q Consensus 160 ~C~ICle~~~~~~~~~~l~CgH~--Fh~~CI~~Wl~~~--~~CPvCr~~l~~~~ 209 (213)
.|||=+..+ ..+.....|.|. |-+.=+....++. -.||+|.+.+.+++
T Consensus 217 ~CPlS~~ri--~~P~Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~~~d 268 (360)
T 4fo9_A 217 MCPLGKMRL--TIPCRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAAYES 268 (360)
T ss_dssp BCTTTCSBC--SSEEEETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCCGGG
T ss_pred eCCCcccee--ccCCcCCCCCCCccCCHHHHHHHHhhCCCeECCCCCcccCHHH
Confidence 699877766 447788899998 7766666655544 46999999887654
No 96
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=80.66 E-value=0.26 Score=34.12 Aligned_cols=52 Identities=19% Similarity=0.319 Sum_probs=33.4
Q ss_pred CCCCccccccccc--cCCCCeEEcCcCCeechhHHHHHHh--cCCCcccccccccC
Q 028139 156 EEEDVCPTCLEEY--DAENPRIITKCEHHFHLACIFEWME--RSDTCPVCNQEMIF 207 (213)
Q Consensus 156 ee~~~C~ICle~~--~~~~~~~~l~CgH~Fh~~CI~~Wl~--~~~~CPvCr~~l~~ 207 (213)
++++.|.||.... ..+.-+..-.|.-.||..|+..-+. ..=.||.|......
T Consensus 23 ~~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~~~~ 78 (88)
T 2l43_A 23 DEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQSRAR 78 (88)
T ss_dssp CCCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHHHTTS
T ss_pred CCCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCccCCCceECccccCccch
Confidence 5667899999754 1222334456888999999975431 12359999765443
No 97
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=79.66 E-value=0.32 Score=32.79 Aligned_cols=44 Identities=18% Similarity=0.559 Sum_probs=29.9
Q ss_pred ccccccccccCCCCeEEcCcCCeechhHHHHHHhc-----CCCcccccc
Q 028139 160 VCPTCLEEYDAENPRIITKCEHHFHLACIFEWMER-----SDTCPVCNQ 203 (213)
Q Consensus 160 ~C~ICle~~~~~~~~~~l~CgH~Fh~~CI~~Wl~~-----~~~CPvCr~ 203 (213)
.|.||...-..+.-+..-.|...||..|+.+=|.. .=.||.|..
T Consensus 28 ~C~vC~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 28 SCRVCGGKHEPNMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SCSSSCCCCCSTTEEECSSSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CCcCcCCcCCCCCEEEcCCCCccccccccCCCccCCCCCCCcCCcCccC
Confidence 68999864334444555678999999999854432 125888864
No 98
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=78.89 E-value=1.9 Score=29.65 Aligned_cols=39 Identities=15% Similarity=0.236 Sum_probs=29.1
Q ss_pred ccCCCCccccccccccCCC-CeEEcCcCCeechhHHHHHH
Q 028139 154 VIEEEDVCPTCLEEYDAEN-PRIITKCEHHFHLACIFEWM 192 (213)
Q Consensus 154 ~~ee~~~C~ICle~~~~~~-~~~~l~CgH~Fh~~CI~~Wl 192 (213)
.+.+...|.+|...|..-. .-..-.||++||..|...++
T Consensus 16 ~d~~~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~~ 55 (90)
T 3t7l_A 16 PDSEAPNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRKC 55 (90)
T ss_dssp CGGGCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEEE
T ss_pred ccccCCcCcCCCCcccchhhCccccCCCCEECCcccCCee
Confidence 3455678999999997643 33456799999999977654
No 99
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=78.37 E-value=0.71 Score=33.16 Aligned_cols=44 Identities=25% Similarity=0.647 Sum_probs=30.3
Q ss_pred ccccccccc-cCCCCeEEcCcCCeechhHHHHHHhcC----CCcccccc
Q 028139 160 VCPTCLEEY-DAENPRIITKCEHHFHLACIFEWMERS----DTCPVCNQ 203 (213)
Q Consensus 160 ~C~ICle~~-~~~~~~~~l~CgH~Fh~~CI~~Wl~~~----~~CPvCr~ 203 (213)
.|.||...- ..+.-+..-.|...||..|+.+-|..- =.||.|+.
T Consensus 63 ~C~vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~p~l~~~P~~~W~C~~C~~ 111 (112)
T 3v43_A 63 TCSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLTRMPKGMWICQICRP 111 (112)
T ss_dssp CBTTTCCCCCTTCCCEECTTTCCEECGGGCSSCCSSCCSSCCCCTTTSC
T ss_pred ccccccCcCCCccceEEcCCCCCeeecccCCCCCCCCCCCCeECCCCCC
Confidence 588888642 223444556699999999997655432 36999975
No 100
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=78.22 E-value=2 Score=28.37 Aligned_cols=49 Identities=22% Similarity=0.403 Sum_probs=31.7
Q ss_pred cCCCCccccccccc--cCCCCeEEcCcCCeechhHHHHHHh--cCCCcccccc
Q 028139 155 IEEEDVCPTCLEEY--DAENPRIITKCEHHFHLACIFEWME--RSDTCPVCNQ 203 (213)
Q Consensus 155 ~ee~~~C~ICle~~--~~~~~~~~l~CgH~Fh~~CI~~Wl~--~~~~CPvCr~ 203 (213)
..+.+.|.||...- ..+.-+..-.|.-.||..|+..-+. ..=.||.|+.
T Consensus 13 ~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~~vP~g~W~C~~C~~ 65 (71)
T 2ku3_A 13 IDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQ 65 (71)
T ss_dssp CCSSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCSSCCSSCCCCHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCCcCCCCCcCCccCcC
Confidence 35667899998764 2233344466899999999975321 1224888854
No 101
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=78.10 E-value=0.34 Score=32.00 Aligned_cols=44 Identities=23% Similarity=0.595 Sum_probs=27.7
Q ss_pred ccccccccccCCCCeEEcCcCCeechhHHHHHHhc-----CCCcccccc
Q 028139 160 VCPTCLEEYDAENPRIITKCEHHFHLACIFEWMER-----SDTCPVCNQ 203 (213)
Q Consensus 160 ~C~ICle~~~~~~~~~~l~CgH~Fh~~CI~~Wl~~-----~~~CPvCr~ 203 (213)
.|.||...-..+.-+..-.|...||..|+.+=|.. .=.||.|+.
T Consensus 20 ~C~~C~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 68 (70)
T 3asl_A 20 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 68 (70)
T ss_dssp SBTTTCCCSCGGGEEECTTTCCEEEGGGSSSCCSSCCSSSCCCCTTTSC
T ss_pred CCcCCCCcCCCCCEEEcCCCCCceecccCCCCcCCCCCCCCcCCcCccC
Confidence 46677753223333444568899999999854433 225888865
No 102
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=78.04 E-value=2.3 Score=28.83 Aligned_cols=38 Identities=13% Similarity=0.177 Sum_probs=28.5
Q ss_pred ccCCCCccccccccccCCCC-eEEcCcCCeechhHHHHH
Q 028139 154 VIEEEDVCPTCLEEYDAENP-RIITKCEHHFHLACIFEW 191 (213)
Q Consensus 154 ~~ee~~~C~ICle~~~~~~~-~~~l~CgH~Fh~~CI~~W 191 (213)
.+.+...|.+|...|..-.. -..-.||++||..|....
T Consensus 17 pd~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~ 55 (84)
T 1z2q_A 17 EDEDAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRHR 55 (84)
T ss_dssp CTTTCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCCE
T ss_pred cCCCCCCCcCcCCccccchhcccccCCCcEEChHHhCCe
Confidence 34566789999999976433 344669999999997664
No 103
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=76.62 E-value=2 Score=29.00 Aligned_cols=38 Identities=21% Similarity=0.409 Sum_probs=28.2
Q ss_pred ccCCCCccccccccccCCCC-eEEcCcCCeechhHHHHH
Q 028139 154 VIEEEDVCPTCLEEYDAENP-RIITKCEHHFHLACIFEW 191 (213)
Q Consensus 154 ~~ee~~~C~ICle~~~~~~~-~~~l~CgH~Fh~~CI~~W 191 (213)
.+.+...|.+|...|..-.. -..-.||.+||..|....
T Consensus 15 ~d~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~ 53 (82)
T 2yw8_A 15 KDDEATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSNE 53 (82)
T ss_dssp CCCCCCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCEE
T ss_pred cCccCCcccCcCCcccCccccccCCCCCCEEChHHhCCe
Confidence 34566789999999976432 344669999999997654
No 104
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=74.83 E-value=0.72 Score=29.54 Aligned_cols=43 Identities=21% Similarity=0.539 Sum_probs=30.4
Q ss_pred CccccccccccCCCCeEEcCcCCeechhHHHHHHhcCCCcccc
Q 028139 159 DVCPTCLEEYDAENPRIITKCEHHFHLACIFEWMERSDTCPVC 201 (213)
Q Consensus 159 ~~C~ICle~~~~~~~~~~l~CgH~Fh~~CI~~Wl~~~~~CPvC 201 (213)
..|--|+..|..........|++.||.+|=.---+.=..||.|
T Consensus 16 ~~C~~C~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh~CPgC 58 (59)
T 1z60_A 16 RFCYGCQGELKDQHVYVCAVCQNVFCVDCDVFVHDSLHSCPGC 58 (59)
T ss_dssp CEETTTTEECTTSEEECCTTTTCCBCHHHHHTTTTTSCSSSTT
T ss_pred CcccccCcccCCCccEECCccCcCcccchhHHHHhhccCCcCC
Confidence 4599999988532223467899999999954433455679988
No 105
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=74.42 E-value=1.6 Score=32.49 Aligned_cols=34 Identities=15% Similarity=0.379 Sum_probs=26.6
Q ss_pred CCCCcccccccccc-C-CCCeEEcCcCCeechhHHH
Q 028139 156 EEEDVCPTCLEEYD-A-ENPRIITKCEHHFHLACIF 189 (213)
Q Consensus 156 ee~~~C~ICle~~~-~-~~~~~~l~CgH~Fh~~CI~ 189 (213)
..+..|.||...|. . ........|.|.+|..|-.
T Consensus 53 ~~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~ 88 (134)
T 1zbd_B 53 DGVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGV 88 (134)
T ss_dssp CSSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEE
T ss_pred CCCccccccCCCcccccCCCCCCCCCCcccccccCC
Confidence 56678999999993 3 3456678899999999954
No 106
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=74.38 E-value=2.9 Score=28.26 Aligned_cols=38 Identities=16% Similarity=0.311 Sum_probs=27.6
Q ss_pred ccCCCCccccccccccCCCC-eEEcCcCCeechhHHHHH
Q 028139 154 VIEEEDVCPTCLEEYDAENP-RIITKCEHHFHLACIFEW 191 (213)
Q Consensus 154 ~~ee~~~C~ICle~~~~~~~-~~~l~CgH~Fh~~CI~~W 191 (213)
.+.+...|.+|...|..-.. -..-.||.+||..|....
T Consensus 10 pd~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~~ 48 (84)
T 1x4u_A 10 PTNNFGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCSFK 48 (84)
T ss_dssp SCCCCSSCSSSCCCCCSSSCCEECSSSCCEECTTTSCEE
T ss_pred cCCCCCcCcCcCCccccchhhhhhcCCCcEEChhhcCCc
Confidence 34566789999999965432 334669999999996543
No 107
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=74.10 E-value=3.1 Score=30.75 Aligned_cols=47 Identities=23% Similarity=0.434 Sum_probs=32.4
Q ss_pred cCCCCccccccccccCCCCeEEcCcCCeechhHHHHHH------hc-----CCCccccccc
Q 028139 155 IEEEDVCPTCLEEYDAENPRIITKCEHHFHLACIFEWM------ER-----SDTCPVCNQE 204 (213)
Q Consensus 155 ~ee~~~C~ICle~~~~~~~~~~l~CgH~Fh~~CI~~Wl------~~-----~~~CPvCr~~ 204 (213)
+..++.|.||-+. ++-+..-.|-..||..||.+-+ +. .=.|++|+-.
T Consensus 54 Dg~~~~C~vC~dG---G~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~~ 111 (129)
T 3ql9_A 54 DGMDEQCRWCAEG---GNLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHPE 111 (129)
T ss_dssp TSCBSSCTTTCCC---SEEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCCG
T ss_pred CCCCCcCeecCCC---CeeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCCH
Confidence 4556779999984 3334445689999999999752 21 2369999653
No 108
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=73.73 E-value=2.9 Score=28.70 Aligned_cols=37 Identities=16% Similarity=0.257 Sum_probs=27.5
Q ss_pred cCCCCccccccccccCCCCe-EEcCcCCeechhHHHHH
Q 028139 155 IEEEDVCPTCLEEYDAENPR-IITKCEHHFHLACIFEW 191 (213)
Q Consensus 155 ~ee~~~C~ICle~~~~~~~~-~~l~CgH~Fh~~CI~~W 191 (213)
.++...|.+|...|..-... ..-.||++||..|....
T Consensus 6 ~~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~~ 43 (88)
T 1wfk_A 6 SGMESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSFS 43 (88)
T ss_dssp CCCCSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCEE
T ss_pred CCcCCCCcCcCCcccCccccccCCCCCCEEChhHcCCc
Confidence 35566899999999764433 34669999999997654
No 109
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=73.32 E-value=3.4 Score=26.66 Aligned_cols=34 Identities=24% Similarity=0.570 Sum_probs=23.7
Q ss_pred CCCCccccccccccCCCCeEE-c-CcCCeechhHHH
Q 028139 156 EEEDVCPTCLEEYDAENPRII-T-KCEHHFHLACIF 189 (213)
Q Consensus 156 ee~~~C~ICle~~~~~~~~~~-l-~CgH~Fh~~CI~ 189 (213)
+....|++|...|..+...+. - .|.--||..|+.
T Consensus 6 ~~~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cvg 41 (65)
T 2vpb_A 6 DPVYPCGICTNEVNDDQDAILCEASCQKWFHRICTG 41 (65)
T ss_dssp ---CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHHT
T ss_pred CCcCcCccCCCccCCCCCeEecccCccccCchhccC
Confidence 455679999999866544433 4 688899999974
No 110
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=72.94 E-value=1.2 Score=31.32 Aligned_cols=45 Identities=20% Similarity=0.305 Sum_probs=31.1
Q ss_pred CCccccccccccCCCCeEEcCcCCeechhHHHHHHhc---CCCcccccc
Q 028139 158 EDVCPTCLEEYDAENPRIITKCEHHFHLACIFEWMER---SDTCPVCNQ 203 (213)
Q Consensus 158 ~~~C~ICle~~~~~~~~~~l~CgH~Fh~~CI~~Wl~~---~~~CPvCr~ 203 (213)
...| ||-.....+.-+..-.|.--||..|+..=+.. .-.||.|+.
T Consensus 28 ~vrC-iC~~~~~~~~mi~Cd~C~~w~H~~C~~~~~~~~p~~w~C~~C~~ 75 (98)
T 2lv9_A 28 VTRC-ICGFTHDDGYMICCDKCSVWQHIDCMGIDRQHIPDTYLCERCQP 75 (98)
T ss_dssp BCCC-TTSCCSCSSCEEEBTTTCBEEETTTTTCCTTSCCSSBCCTTTSS
T ss_pred CEEe-ECCCccCCCcEEEcCCCCCcCcCcCCCCCccCCCCCEECCCCcC
Confidence 3457 89877665555555678999999998753322 236999974
No 111
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=71.79 E-value=0.94 Score=36.85 Aligned_cols=44 Identities=23% Similarity=0.595 Sum_probs=27.5
Q ss_pred ccccccccccCCCCeEEcCcCCeechhHHHHHHhc-----CCCcccccc
Q 028139 160 VCPTCLEEYDAENPRIITKCEHHFHLACIFEWMER-----SDTCPVCNQ 203 (213)
Q Consensus 160 ~C~ICle~~~~~~~~~~l~CgH~Fh~~CI~~Wl~~-----~~~CPvCr~ 203 (213)
.|.||...-..+.-+..-.|...||..|+.+=|.. .=.||.|+.
T Consensus 176 ~C~vC~~~~~~~~lL~CD~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~ 224 (226)
T 3ask_A 176 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 224 (226)
T ss_dssp SCSSSCCCCC--CCEECSSSCCEECSCC--CCCCSCCSSSCCCCGGGC-
T ss_pred CCcCCCCCCCCCCeEEcCCCCcceeCccCCCCcccCCCCCCCCCcCCcC
Confidence 68888764334455556679999999999854433 124999965
No 112
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=71.06 E-value=0.64 Score=34.11 Aligned_cols=48 Identities=17% Similarity=0.488 Sum_probs=31.1
Q ss_pred CCCCccccccccccCCC-CeEEcCcCCeechhHHHHHHhcCCCcccccc
Q 028139 156 EEEDVCPTCLEEYDAEN-PRIITKCEHHFHLACIFEWMERSDTCPVCNQ 203 (213)
Q Consensus 156 ee~~~C~ICle~~~~~~-~~~~l~CgH~Fh~~CI~~Wl~~~~~CPvCr~ 203 (213)
.+...|.+|...|..-. .-..-.||.+||..|....+.....|-.|-.
T Consensus 17 ~~~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~~vRVC~~C~~ 65 (120)
T 1y02_A 17 GLEPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNGPRLCLLCQR 65 (120)
T ss_dssp ---CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC----CCEEHHHHH
T ss_pred cccCcccCcCCccccccccccCCCCCCeeCHHHhCCCCCCceECHHHHH
Confidence 44567999999996532 2345679999999998776665667777743
No 113
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=70.51 E-value=2.8 Score=31.89 Aligned_cols=46 Identities=22% Similarity=0.452 Sum_probs=32.0
Q ss_pred CCCccccccccc--cCCCCeEEcCcCCeechhHHHHHHhcC--CCcccccc
Q 028139 157 EEDVCPTCLEEY--DAENPRIITKCEHHFHLACIFEWMERS--DTCPVCNQ 203 (213)
Q Consensus 157 e~~~C~ICle~~--~~~~~~~~l~CgH~Fh~~CI~~Wl~~~--~~CPvCr~ 203 (213)
.+..|.+|+..| ..+.......|.|.+|..|= .|+... =.|=+|.+
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~-~~~~~~~~W~C~vC~k 116 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCLECSLFVCKSCS-HAHPEEQGWLCDPCHL 116 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGE-ECCSSSSSCEEHHHHH
T ss_pred CCccchhhcCccccccCCCCcCCCCCchhhcccc-cccCCCCcEeeHHHHH
Confidence 467899999986 44556777889999999996 233221 13666654
No 114
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=69.88 E-value=4.1 Score=26.54 Aligned_cols=33 Identities=18% Similarity=0.287 Sum_probs=26.0
Q ss_pred CCCCccccccccccCCCCeEEcCc-CCeechhHHHHHH
Q 028139 156 EEEDVCPTCLEEYDAENPRIITKC-EHHFHLACIFEWM 192 (213)
Q Consensus 156 ee~~~C~ICle~~~~~~~~~~l~C-gH~Fh~~CI~~Wl 192 (213)
++..-|.||.++ -.+..+.| |-+||..|..+--
T Consensus 6 ee~pWC~ICneD----AtlrC~gCdgDLYC~rC~rE~H 39 (67)
T 2d8v_A 6 SGLPWCCICNED----ATLRCAGCDGDLYCARCFREGH 39 (67)
T ss_dssp CCCSSCTTTCSC----CCEEETTTTSEEECSSHHHHHT
T ss_pred cCCCeeEEeCCC----CeEEecCCCCceehHHHHHHHc
Confidence 555679999996 23778889 8899999988743
No 115
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=68.98 E-value=3.1 Score=27.74 Aligned_cols=48 Identities=23% Similarity=0.382 Sum_probs=31.4
Q ss_pred CCCCccccccccccC-CCCeEEcCcCCeechhHHHHHHh-----cCCCccccccc
Q 028139 156 EEEDVCPTCLEEYDA-ENPRIITKCEHHFHLACIFEWME-----RSDTCPVCNQE 204 (213)
Q Consensus 156 ee~~~C~ICle~~~~-~~~~~~l~CgH~Fh~~CI~~Wl~-----~~~~CPvCr~~ 204 (213)
.+...| ||...+.. +.-+..-.|..=||..|+.--.. ..-.||.|+..
T Consensus 10 ~~~~~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~ 63 (79)
T 1wep_A 10 LVPVYC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAV 63 (79)
T ss_dssp CCCCCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTT
T ss_pred CCccEE-EcCCccCCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCcccc
Confidence 444556 99988753 33334456888999999853221 23469999864
No 116
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=68.54 E-value=1.5 Score=30.08 Aligned_cols=49 Identities=18% Similarity=0.341 Sum_probs=33.3
Q ss_pred CCCccccccccccC--CCCeEEcCcCCeechhHHHHHHhc--------CCCcccccccc
Q 028139 157 EEDVCPTCLEEYDA--ENPRIITKCEHHFHLACIFEWMER--------SDTCPVCNQEM 205 (213)
Q Consensus 157 e~~~C~ICle~~~~--~~~~~~l~CgH~Fh~~CI~~Wl~~--------~~~CPvCr~~l 205 (213)
+...|.||...-.. +.-+..-.|...||..|+..-|.. .=.|+.|+...
T Consensus 15 ~~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~ 73 (88)
T 1wev_A 15 MGLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQM 73 (88)
T ss_dssp HCCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHH
T ss_pred CCCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccchh
Confidence 45679999986432 233444568999999999876542 23599996644
No 117
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=66.78 E-value=1.4 Score=24.96 Aligned_cols=15 Identities=27% Similarity=0.835 Sum_probs=11.0
Q ss_pred CCCCccccccccccC
Q 028139 156 EEEDVCPTCLEEYDA 170 (213)
Q Consensus 156 ee~~~C~ICle~~~~ 170 (213)
.+...||||+..+..
T Consensus 3 ~EGFiCP~C~~~l~s 17 (34)
T 3mjh_B 3 SEGFICPQCMKSLGS 17 (34)
T ss_dssp SEEEECTTTCCEESS
T ss_pred CcccCCcHHHHHcCC
Confidence 345789999887754
No 118
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=66.04 E-value=2.4 Score=27.92 Aligned_cols=45 Identities=29% Similarity=0.557 Sum_probs=27.7
Q ss_pred CCCccccccccccCCCCeEEcC--cC-CeechhHHHHHHhc----CCCcccccccc
Q 028139 157 EEDVCPTCLEEYDAENPRIITK--CE-HHFHLACIFEWMER----SDTCPVCNQEM 205 (213)
Q Consensus 157 e~~~C~ICle~~~~~~~~~~l~--Cg-H~Fh~~CI~~Wl~~----~~~CPvCr~~l 205 (213)
+...| ||..... +.-+..-. |. .-||..||. |.. +=.||.|+...
T Consensus 15 ~~~~C-~C~~~~~-g~MI~CD~~~C~~~wfH~~Cvg--l~~~p~g~w~Cp~C~~~~ 66 (71)
T 1wen_A 15 EPTYC-LCHQVSY-GEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQES 66 (71)
T ss_dssp SCCCS-TTCCCSC-SSEECCSCSSCSCCCEETTTTT--CSSCCSSCCCCTTTSSCS
T ss_pred CCCEE-ECCCCCC-CCEeEeeCCCCCCccEecccCC--cCcCCCCCEECCCCCccc
Confidence 44567 8988643 33122223 54 589999997 433 23599997754
No 119
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=65.07 E-value=1.3 Score=31.68 Aligned_cols=30 Identities=27% Similarity=0.475 Sum_probs=20.3
Q ss_pred EEcCcCCeechhHHHHHHhcCCCcccccccccCCC
Q 028139 175 IITKCEHHFHLACIFEWMERSDTCPVCNQEMIFDL 209 (213)
Q Consensus 175 ~~l~CgH~Fh~~CI~~Wl~~~~~CPvCr~~l~~~~ 209 (213)
....||+.| ..-+.....||.|+.+-...+
T Consensus 69 ~C~~CG~~F-----~~~~~kPsrCP~CkSe~Ie~P 98 (105)
T 2gmg_A 69 QCRKCGFVF-----KAEINIPSRCPKCKSEWIEEP 98 (105)
T ss_dssp BBTTTCCBC-----CCCSSCCSSCSSSCCCCBCCC
T ss_pred ChhhCcCee-----cccCCCCCCCcCCCCCccCCc
Confidence 456799999 122344578999998765543
No 120
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=64.79 E-value=3.6 Score=29.48 Aligned_cols=33 Identities=21% Similarity=0.359 Sum_probs=23.9
Q ss_pred Ccccccccccc-------CCCCeEEcCcCCeechhHHHHH
Q 028139 159 DVCPTCLEEYD-------AENPRIITKCEHHFHLACIFEW 191 (213)
Q Consensus 159 ~~C~ICle~~~-------~~~~~~~l~CgH~Fh~~CI~~W 191 (213)
+.|.||+..-. .++-+....|+..||..||..+
T Consensus 2 ~~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~~ 41 (114)
T 2kwj_A 2 SYCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFT 41 (114)
T ss_dssp CCCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTCC
T ss_pred CcCccCCCCccccccCCCCCCCeEeCCCCCccchhhCCCh
Confidence 56999987541 1234555779999999999765
No 121
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=64.19 E-value=0.99 Score=30.38 Aligned_cols=44 Identities=23% Similarity=0.586 Sum_probs=27.2
Q ss_pred ccccccccccCCCCeEEcCcCCeechhHHHHHHhcC-----CCcccccc
Q 028139 160 VCPTCLEEYDAENPRIITKCEHHFHLACIFEWMERS-----DTCPVCNQ 203 (213)
Q Consensus 160 ~C~ICle~~~~~~~~~~l~CgH~Fh~~CI~~Wl~~~-----~~CPvCr~ 203 (213)
.|.||...-..+.-+..-.|...||..|+.+-|... =.||.|+.
T Consensus 28 ~C~vC~~~~d~~~ll~CD~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~ 76 (77)
T 3shb_A 28 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 76 (77)
T ss_dssp SBTTTCCCSCGGGEEECTTTCCEEETTTSSSCCSSCCSSSCCCCTTTC-
T ss_pred cCCccCCCCCCcceeEeCCCCCccCcccCCCcccCCCCCCceECcCccc
Confidence 366665543333333345588999999999766431 25888875
No 122
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=62.51 E-value=6.4 Score=25.75 Aligned_cols=33 Identities=18% Similarity=0.303 Sum_probs=24.6
Q ss_pred CccccccccccCCCC-eEEcCcCCeechhHHHHH
Q 028139 159 DVCPTCLEEYDAENP-RIITKCEHHFHLACIFEW 191 (213)
Q Consensus 159 ~~C~ICle~~~~~~~-~~~l~CgH~Fh~~CI~~W 191 (213)
..|.+|...|..-.. -..-.||.+||..|....
T Consensus 12 ~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~~~ 45 (73)
T 1vfy_A 12 DACMICSKKFSLLNRKHHCRSCGGVFCQEHSSNS 45 (73)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEECGGGSCEE
T ss_pred CcccCCCCccCCccccccCCCCCEEEcccccCCe
Confidence 479999999966332 334669999999996543
No 123
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=61.49 E-value=7.2 Score=25.58 Aligned_cols=47 Identities=21% Similarity=0.393 Sum_probs=31.5
Q ss_pred CCCccccccccccCCCCeEEcCcCCeechhHHHHHH---------hcCCCccccccc
Q 028139 157 EEDVCPTCLEEYDAENPRIITKCEHHFHLACIFEWM---------ERSDTCPVCNQE 204 (213)
Q Consensus 157 e~~~C~ICle~~~~~~~~~~l~CgH~Fh~~CI~~Wl---------~~~~~CPvCr~~ 204 (213)
+...| ||...+..+.-+..-.|..=||..|+.--. ...-.||.|+..
T Consensus 15 ~~~~C-~C~~~~~~~~MI~Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~ 70 (76)
T 1wem_A 15 NALYC-ICRQPHNNRFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTIL 70 (76)
T ss_dssp TCCCS-TTCCCCCSSCEEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHH
T ss_pred CCCEE-ECCCccCCCCEEEeCCCCCcEeCeEEccchhhhhhccCCCCeEECcCCcCc
Confidence 34557 899887644434445688999999985221 235679999764
No 124
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=61.08 E-value=13 Score=25.71 Aligned_cols=50 Identities=16% Similarity=0.382 Sum_probs=34.7
Q ss_pred CCCccccccccccC---CCCe-EEcCcCCeechhHHHH-HHhcCCCccccccccc
Q 028139 157 EEDVCPTCLEEYDA---ENPR-IITKCEHHFHLACIFE-WMERSDTCPVCNQEMI 206 (213)
Q Consensus 157 e~~~C~ICle~~~~---~~~~-~~l~CgH~Fh~~CI~~-Wl~~~~~CPvCr~~l~ 206 (213)
...+|.||=+++.. ++.. ..--|+--.|..|+.- +-+.+..||.|+..+.
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYk 69 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYK 69 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCC
T ss_pred CCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCccc
Confidence 44689999998733 2221 2244777889999864 3355789999998875
No 125
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=60.93 E-value=3.3 Score=28.71 Aligned_cols=45 Identities=29% Similarity=0.557 Sum_probs=27.9
Q ss_pred CCCccccccccccCCCCeEEcC--cC-CeechhHHHHHHhc----CCCcccccccc
Q 028139 157 EEDVCPTCLEEYDAENPRIITK--CE-HHFHLACIFEWMER----SDTCPVCNQEM 205 (213)
Q Consensus 157 e~~~C~ICle~~~~~~~~~~l~--Cg-H~Fh~~CI~~Wl~~----~~~CPvCr~~l 205 (213)
+...| ||..... +.-+..-. |. .-||..||. |.. +-.||.|+...
T Consensus 35 e~~yC-iC~~~~~-g~MI~CD~~dC~~~WfH~~CVg--l~~~p~g~W~Cp~C~~~~ 86 (91)
T 1weu_A 35 EPTYC-LCHQVSY-GEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQES 86 (91)
T ss_dssp CCBCS-TTCCBCC-SCCCCCSCSSCSCCCCCSTTTT--CSSCCCSSCCCTTTCCCC
T ss_pred CCcEE-ECCCCCC-CCEeEecCCCCCCCCEecccCC--cCcCCCCCEECcCccCcC
Confidence 44567 9988653 33222233 44 579999997 433 23599997754
No 126
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=58.57 E-value=4.7 Score=28.77 Aligned_cols=43 Identities=23% Similarity=0.533 Sum_probs=27.2
Q ss_pred CCCCccccccccccCCCCeEEc--CcCCeechhHHHHHHhcC----CCcccccc
Q 028139 156 EEEDVCPTCLEEYDAENPRIIT--KCEHHFHLACIFEWMERS----DTCPVCNQ 203 (213)
Q Consensus 156 ee~~~C~ICle~~~~~~~~~~l--~CgH~Fh~~CI~~Wl~~~----~~CPvCr~ 203 (213)
++++.|.||.+. ++-+..- .|-..||..|+. |... =.||.|.-
T Consensus 13 ~~~~~C~~C~~~---G~ll~CD~~~Cp~~fH~~Cl~--L~~~P~g~W~Cp~c~C 61 (107)
T 4gne_A 13 MHEDYCFQCGDG---GELVMCDKKDCPKAYHLLCLN--LTQPPYGKWECPWHQC 61 (107)
T ss_dssp SSCSSCTTTCCC---SEEEECCSTTCCCEECTGGGT--CSSCCSSCCCCGGGBC
T ss_pred CCCCCCCcCCCC---CcEeEECCCCCCcccccccCc--CCcCCCCCEECCCCCC
Confidence 566789999852 3322223 477899999997 5432 23776543
No 127
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=57.26 E-value=6.2 Score=31.40 Aligned_cols=34 Identities=24% Similarity=0.446 Sum_probs=25.7
Q ss_pred CCccccccccccCCC-CeEEcCcCCeechhHHHHH
Q 028139 158 EDVCPTCLEEYDAEN-PRIITKCEHHFHLACIFEW 191 (213)
Q Consensus 158 ~~~C~ICle~~~~~~-~~~~l~CgH~Fh~~CI~~W 191 (213)
...|.+|...|..-. .-..-.||++||..|....
T Consensus 161 ~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~~ 195 (220)
T 1dvp_A 161 GRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAKQ 195 (220)
T ss_dssp CSBCTTTCCBCCSSSCCEECTTTCCEECSTTSCEE
T ss_pred CCccCCCCCccCCcccccccCCcCCEEChHHhCCe
Confidence 468999999996543 3344669999999997654
No 128
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=56.16 E-value=2.5 Score=32.39 Aligned_cols=47 Identities=19% Similarity=0.421 Sum_probs=30.8
Q ss_pred CCCCccccccccccC-CCCeEEcCcCCeechhHHHHHH-----hcCCCcccccc
Q 028139 156 EEEDVCPTCLEEYDA-ENPRIITKCEHHFHLACIFEWM-----ERSDTCPVCNQ 203 (213)
Q Consensus 156 ee~~~C~ICle~~~~-~~~~~~l~CgH~Fh~~CI~~Wl-----~~~~~CPvCr~ 203 (213)
++...| ||...+.. +.-+..-.|..-||..|+.--. ...-.||.|+.
T Consensus 6 ~~~~~C-~C~~~~~~~~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~ 58 (174)
T 2ri7_A 6 DTKLYC-ICKTPEDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQS 58 (174)
T ss_dssp -CCEET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHH
T ss_pred CCCcEe-eCCCCCCCCCCEeECCCCCchhChhhcCCchhhccCccCeecCCCcc
Confidence 455678 99988753 3334445688999999995321 12346999975
No 129
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=55.90 E-value=2 Score=27.23 Aligned_cols=43 Identities=28% Similarity=0.566 Sum_probs=25.4
Q ss_pred CCCccccccccccCCCCeEEcC--cC-CeechhHHHHHHhc----CCCcccccc
Q 028139 157 EEDVCPTCLEEYDAENPRIITK--CE-HHFHLACIFEWMER----SDTCPVCNQ 203 (213)
Q Consensus 157 e~~~C~ICle~~~~~~~~~~l~--Cg-H~Fh~~CI~~Wl~~----~~~CPvCr~ 203 (213)
+...| ||..... +.-+..-. |. .-||..|+. |.. +=.||.|++
T Consensus 9 e~~~C-~C~~~~~-g~mi~CD~cdC~~~wfH~~Cvg--l~~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 9 EPTYC-LCHQVSY-GEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQ 58 (60)
T ss_dssp CCEET-TTTEECC-SEEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCCEE-ECCCcCC-CCEEEeCCCCCCCceEehhcCC--CCcCCCCCEECcCccC
Confidence 34456 9988643 32122223 44 579999997 433 235888864
No 130
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=55.63 E-value=5.6 Score=24.20 Aligned_cols=42 Identities=17% Similarity=0.402 Sum_probs=27.4
Q ss_pred cccccccccCCCCeEE-c-CcCCeechhHHHHHH----hcCCCccccc
Q 028139 161 CPTCLEEYDAENPRII-T-KCEHHFHLACIFEWM----ERSDTCPVCN 202 (213)
Q Consensus 161 C~ICle~~~~~~~~~~-l-~CgH~Fh~~CI~~Wl----~~~~~CPvCr 202 (213)
|.||...+..+...+. - .|.-=||..|+.--. ..+-.||.|+
T Consensus 5 cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 5 AQNCQRPCKDKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp CTTCCCCCCTTCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred CCCCcCccCCCCcEEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence 7899888854443332 3 588899999975322 2456788885
No 131
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=54.52 E-value=7.1 Score=31.32 Aligned_cols=36 Identities=14% Similarity=0.410 Sum_probs=26.9
Q ss_pred CCCccccccccccCCC-CeEEcCcCCeechhHHHHHH
Q 028139 157 EEDVCPTCLEEYDAEN-PRIITKCEHHFHLACIFEWM 192 (213)
Q Consensus 157 e~~~C~ICle~~~~~~-~~~~l~CgH~Fh~~CI~~Wl 192 (213)
+...|.+|...|..-. .-..-.||+.||..|-..++
T Consensus 163 ~~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~~~ 199 (226)
T 3zyq_A 163 DAEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSKYS 199 (226)
T ss_dssp CCSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCEEE
T ss_pred cCCCCcCcCCCCCccccccccCCCcCEeChhhcCCcc
Confidence 3458999999997643 23456799999999976543
No 132
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=54.07 E-value=8.4 Score=27.18 Aligned_cols=47 Identities=21% Similarity=0.440 Sum_probs=31.2
Q ss_pred CccccccccccCCCCeE-Ec-CcCCeechhHHHHHHh----------cCCCcccccccc
Q 028139 159 DVCPTCLEEYDAENPRI-IT-KCEHHFHLACIFEWME----------RSDTCPVCNQEM 205 (213)
Q Consensus 159 ~~C~ICle~~~~~~~~~-~l-~CgH~Fh~~CI~~Wl~----------~~~~CPvCr~~l 205 (213)
..|+||...|......+ .- .|.-=||..|+.--.. .+-.||.|+...
T Consensus 4 ~~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~~ 62 (105)
T 2xb1_A 4 YPCGACRSEVNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKTK 62 (105)
T ss_dssp CBCTTTCSBCCTTSCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHTT
T ss_pred CCCCCCCCccCCCCCEEEecCCcccccccccCCcCHHHHHhhccCCCCCEECccccCcC
Confidence 45999999985543333 33 5888999999852210 234699997643
No 133
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=52.54 E-value=2.9 Score=36.40 Aligned_cols=51 Identities=14% Similarity=0.285 Sum_probs=0.0
Q ss_pred cCCCCccccccccccCCC-CeEEcCcCCeechhHHHHHHh-------cCCCcccccccc
Q 028139 155 IEEEDVCPTCLEEYDAEN-PRIITKCEHHFHLACIFEWME-------RSDTCPVCNQEM 205 (213)
Q Consensus 155 ~ee~~~C~ICle~~~~~~-~~~~l~CgH~Fh~~CI~~Wl~-------~~~~CPvCr~~l 205 (213)
+.+...|.+|...|..-. ....-.||+.||..|-..++. ....|-.|-..+
T Consensus 372 ~~~~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~~~~~~~~~~~rvC~~C~~~l 430 (434)
T 3mpx_A 372 VTHVMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKYPLKYLKDRMAKVCDGCFGEL 430 (434)
T ss_dssp -----------------------------------------------------------
T ss_pred cccCCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCeeeCCCCCCCcCEecHHHHHHH
Confidence 345668999999996532 234567999999999987652 135677775544
No 134
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=51.31 E-value=10 Score=29.02 Aligned_cols=36 Identities=14% Similarity=0.346 Sum_probs=25.4
Q ss_pred CCCCccccccccccCCCCeEEc--CcCCeechhHHHHHHhc
Q 028139 156 EEEDVCPTCLEEYDAENPRIIT--KCEHHFHLACIFEWMER 194 (213)
Q Consensus 156 ee~~~C~ICle~~~~~~~~~~l--~CgH~Fh~~CI~~Wl~~ 194 (213)
-.+..|.||-+. ++.+..- .|...||..||..++..
T Consensus 77 G~~~yC~wC~~G---g~l~~Cdn~~C~r~FC~~CI~~nvG~ 114 (159)
T 3a1b_A 77 GYQSYCTICCGG---REVLMCGNNNCCRCFCVECVDLLVGP 114 (159)
T ss_dssp SSBSSCTTTSCC---SEEEECSSTTTCCEEEHHHHHHHTCT
T ss_pred CCcceeeEecCC---CeEEeeCCCCCCCchhHHHHHHhcCH
Confidence 345579999873 3223333 58899999999999854
No 135
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=46.11 E-value=19 Score=23.00 Aligned_cols=40 Identities=18% Similarity=0.499 Sum_probs=27.0
Q ss_pred CCccccccccccCCCCeEEcCcCCeechhHHHHHHhcCCCcccccccccC
Q 028139 158 EDVCPTCLEEYDAENPRIITKCEHHFHLACIFEWMERSDTCPVCNQEMIF 207 (213)
Q Consensus 158 ~~~C~ICle~~~~~~~~~~l~CgH~Fh~~CI~~Wl~~~~~CPvCr~~l~~ 207 (213)
...|..|-+.+..++.+ ..-+..||..|. +|-.|++.|..
T Consensus 9 ~~~C~~C~~~I~~~~~v--~a~~~~~H~~CF--------~C~~C~~~L~~ 48 (76)
T 2cu8_A 9 ASKCPKCDKTVYFAEKV--SSLGKDWHKFCL--------KCERCSKTLTP 48 (76)
T ss_dssp CCBCTTTCCBCCTTTEE--EETTEEEETTTC--------BCSSSCCBCCT
T ss_pred CCCCcCCCCEeECCeEE--EECCeEeeCCCC--------CCCCCCCccCC
Confidence 45689998887644432 335778888773 48888877653
No 136
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=46.01 E-value=17 Score=31.71 Aligned_cols=44 Identities=18% Similarity=0.465 Sum_probs=31.8
Q ss_pred CCCccccccccccCCCCeEEc--CcCCeechhHHHHHHhc----------CCCcccccc
Q 028139 157 EEDVCPTCLEEYDAENPRIIT--KCEHHFHLACIFEWMER----------SDTCPVCNQ 203 (213)
Q Consensus 157 e~~~C~ICle~~~~~~~~~~l--~CgH~Fh~~CI~~Wl~~----------~~~CPvCr~ 203 (213)
.+..|.||-+. ++-+..- .|...||..||..++-+ .=.|=+|.-
T Consensus 92 ~~~yCr~C~~G---g~l~~Cdn~~C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~p 147 (386)
T 2pv0_B 92 YQSYCSICCSG---ETLLICGNPDCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLCLP 147 (386)
T ss_dssp SBCSCTTTCCC---SSCEECCSTTCCCEECHHHHHHHTCTTHHHHHHHCSSCCCTTTSS
T ss_pred CcccceEcCCC---CeEEEeCCCCCCcchHHHHHHHhcChhHHHHhhccCCceEEEcCC
Confidence 44579999874 4445555 79999999999999933 235877854
No 137
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=45.66 E-value=4.9 Score=21.61 Aligned_cols=11 Identities=27% Similarity=0.646 Sum_probs=7.6
Q ss_pred CCccccccccc
Q 028139 196 DTCPVCNQEMI 206 (213)
Q Consensus 196 ~~CPvCr~~l~ 206 (213)
-+||+|+..+.
T Consensus 4 ~~CpvCk~q~P 14 (28)
T 2jvx_A 4 FCCPKCQYQAP 14 (28)
T ss_dssp EECTTSSCEES
T ss_pred ccCccccccCc
Confidence 35888887654
No 138
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C
Probab=45.61 E-value=18 Score=22.99 Aligned_cols=48 Identities=19% Similarity=0.454 Sum_probs=33.3
Q ss_pred CCCCcccccccc-ccCCCCeEEcCcCCeechhHHHHHHhcCC----Ccccccc
Q 028139 156 EEEDVCPTCLEE-YDAENPRIITKCEHHFHLACIFEWMERSD----TCPVCNQ 203 (213)
Q Consensus 156 ee~~~C~ICle~-~~~~~~~~~l~CgH~Fh~~CI~~Wl~~~~----~CPvCr~ 203 (213)
.+..+|.||+.. |..+...+...|.-.||..|-..|-.+++ .|-+||+
T Consensus 7 ~d~~~C~iC~KTKFADG~Gh~C~yCk~r~CaRCGg~v~lr~~k~~WvC~lC~k 59 (62)
T 2a20_A 7 GDAPTCGICHKTKFADGCGHNCSYCQTKFCARCGGRVSLRSNKVMWVCNLCRK 59 (62)
T ss_dssp SCCCCCSSSSCSCCCSSCCEEBTTTCCEECTTSEEEEESSTTCEEEEEHHHHH
T ss_pred CCcchhhhhccceeccCCCccccccCCeeecccCCEeeecCCeEEEEehhhhh
Confidence 556789999975 56666666777888888888766654433 3666654
No 139
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=45.04 E-value=13 Score=23.91 Aligned_cols=45 Identities=7% Similarity=-0.036 Sum_probs=27.8
Q ss_pred CCCccccccccccCCCCeEEcCcCCeech-hHHHHHHhcCCCcccccccc
Q 028139 157 EEDVCPTCLEEYDAENPRIITKCEHHFHL-ACIFEWMERSDTCPVCNQEM 205 (213)
Q Consensus 157 e~~~C~ICle~~~~~~~~~~l~CgH~Fh~-~CI~~Wl~~~~~CPvCr~~l 205 (213)
+=..|.+|...+..+. ....=|..||. .|..+- ....|-.|...+
T Consensus 26 ~CF~C~~C~~~L~~~~--~~~~~g~~yC~~~cy~~~--f~~~C~~C~~~~ 71 (76)
T 1iml_A 26 PCLKCEKCGKTLTSGG--HAEHEGKPYCNHPCYSAM--FGPKGFGRGGAE 71 (76)
T ss_dssp TTCBCTTTCCBCCTTT--EEEETTEEEETTTHHHHH--SSCCCSSCCCSS
T ss_pred CCCCccccCccCCCCc--eECcCCeEeeCHHHHHHH--hCccCCCcCCce
Confidence 3457888887775542 23345677888 587653 345588886543
No 140
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=44.17 E-value=23 Score=23.12 Aligned_cols=40 Identities=20% Similarity=0.566 Sum_probs=27.2
Q ss_pred CCCccccccccccCCCCeEEcCcCCeechhHHHHHHhcCCCccccccccc
Q 028139 157 EEDVCPTCLEEYDAENPRIITKCEHHFHLACIFEWMERSDTCPVCNQEMI 206 (213)
Q Consensus 157 e~~~C~ICle~~~~~~~~~~l~CgH~Fh~~CI~~Wl~~~~~CPvCr~~l~ 206 (213)
....|..|-..+..++.+.. =+..||..| -+|-.|++.|.
T Consensus 14 ~~~~C~~C~~~I~~~~~v~a--~~~~wH~~C--------F~C~~C~~~L~ 53 (80)
T 2dj7_A 14 GPSHCAGCKEEIKHGQSLLA--LDKQWHVSC--------FKCQTCSVILT 53 (80)
T ss_dssp SCSCCTTTCCCCSSSCCEEE--TTEEECTTT--------CBCSSSCCBCS
T ss_pred CCCCCcCcCCeeCCCeEEEE--CCccccccc--------CCcCcCCCCcC
Confidence 34569999888765443333 477888877 34888887764
No 141
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=44.17 E-value=12 Score=24.16 Aligned_cols=47 Identities=17% Similarity=0.422 Sum_probs=30.7
Q ss_pred CCCCccccccccccCCCCeEEcCcCCeechhHHHHHHh---cCCCcccccc
Q 028139 156 EEEDVCPTCLEEYDAENPRIITKCEHHFHLACIFEWME---RSDTCPVCNQ 203 (213)
Q Consensus 156 ee~~~C~ICle~~~~~~~~~~l~CgH~Fh~~CI~~Wl~---~~~~CPvCr~ 203 (213)
.+...| ||...+..+.-+..-.|..=||..|+.--.. ..-.||.|+.
T Consensus 17 ~~~~~C-iC~~~~~~~~MIqCd~C~~WfH~~Cvgi~~~~~~~~~~C~~C~~ 66 (68)
T 3o70_A 17 QGLVTC-FCMKPFAGRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 66 (68)
T ss_dssp TTCCCS-TTCCCCTTCCEEECTTTCCEEETTTTTCCTTSCCSSCCCHHHHT
T ss_pred CCceEe-ECCCcCCCCCEEECCCCCccccccccCcCcccCCCcEECCCCCC
Confidence 455568 9998776433344466889999999864221 2346888864
No 142
>2apo_B Ribosome biogenesis protein NOP10; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: g.41.16.1 PDB: 2aqc_A
Probab=43.10 E-value=14 Score=23.47 Aligned_cols=19 Identities=21% Similarity=0.816 Sum_probs=15.9
Q ss_pred CCCcccccccccCCCCCCC
Q 028139 195 SDTCPVCNQEMIFDLPVDY 213 (213)
Q Consensus 195 ~~~CPvCr~~l~~~~~~~~ 213 (213)
+..||.|......-+|..|
T Consensus 18 k~~CP~CG~~T~~~hParf 36 (60)
T 2apo_B 18 KEICPKCGEKTVIPKPPKF 36 (60)
T ss_dssp SSBCSSSCSBCBCCCCCCC
T ss_pred cccCcCCCCcCCCCCCCCC
Confidence 6779999999888887766
No 143
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=42.82 E-value=11 Score=26.54 Aligned_cols=44 Identities=20% Similarity=0.547 Sum_probs=28.7
Q ss_pred ccccccccccCCCCeEEcCcCCeechhHHHHHHhc----CCCcccccc
Q 028139 160 VCPTCLEEYDAENPRIITKCEHHFHLACIFEWMER----SDTCPVCNQ 203 (213)
Q Consensus 160 ~C~ICle~~~~~~~~~~l~CgH~Fh~~CI~~Wl~~----~~~CPvCr~ 203 (213)
.|.||...-....-+..-.|...||..|+.+=|.. .=.||.|+.
T Consensus 56 ~C~~C~~~~~~~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~ 103 (111)
T 2ysm_A 56 VCQNCKQSGEDSKMLVCDTCDKGYHTFCLQPVMKSVPTNGWKCKNCRI 103 (111)
T ss_dssp CCTTTCCCSCCTTEEECSSSCCEEEGGGSSSCCSSCCSSCCCCHHHHC
T ss_pred cccccCccCCCCCeeECCCCCcHHhHHhcCCccccCCCCCcCCcCCcC
Confidence 47777765433334445668999999999865433 234888854
No 144
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=42.22 E-value=9.2 Score=20.64 Aligned_cols=27 Identities=19% Similarity=0.431 Sum_probs=17.9
Q ss_pred CccccccccccCCCCeEEcCcCCeechhH
Q 028139 159 DVCPTCLEEYDAENPRIITKCEHHFHLAC 187 (213)
Q Consensus 159 ~~C~ICle~~~~~~~~~~l~CgH~Fh~~C 187 (213)
+.|+.|-..+-..+. ++.=|..||..|
T Consensus 4 ~~C~~C~k~Vy~~Ek--~~~~g~~~Hk~C 30 (31)
T 1zfo_A 4 PNCARCGKIVYPTEK--VNCLDKFWHKAC 30 (31)
T ss_dssp CBCSSSCSBCCGGGC--CCSSSSCCCGGG
T ss_pred CcCCccCCEEeccee--EEECCeEecccC
Confidence 468999887644332 233578899887
No 145
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=41.75 E-value=4.8 Score=25.54 Aligned_cols=37 Identities=22% Similarity=0.598 Sum_probs=25.4
Q ss_pred CccccccccccC---CCCeEEcC--cCCeechhHHHHHHhcC
Q 028139 159 DVCPTCLEEYDA---ENPRIITK--CEHHFHLACIFEWMERS 195 (213)
Q Consensus 159 ~~C~ICle~~~~---~~~~~~l~--CgH~Fh~~CI~~Wl~~~ 195 (213)
..||-|.-.++- -+...... |++.||..|..+|-...
T Consensus 7 k~CP~C~~~Iek~~GCnhmtC~~~~C~~~FCw~C~~~~~~~~ 48 (60)
T 1wd2_A 7 KECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPWEPHG 48 (60)
T ss_dssp CCCTTTCCCCSSCCSCCSSSCCSSGGGSCCSSSSCSCSGGGG
T ss_pred eECcCCCCeeEeCCCCCcEEECCCCcCCEEeeCcCCCcccCC
Confidence 458888776633 23344444 89999999999987543
No 146
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=41.36 E-value=6.1 Score=25.88 Aligned_cols=18 Identities=17% Similarity=0.493 Sum_probs=9.3
Q ss_pred HHHhcCCCcccccccccC
Q 028139 190 EWMERSDTCPVCNQEMIF 207 (213)
Q Consensus 190 ~Wl~~~~~CPvCr~~l~~ 207 (213)
+||..--.||+|+.++.+
T Consensus 3 ~~LLeiL~CP~ck~~L~~ 20 (69)
T 2pk7_A 3 TKLLDILACPICKGPLKL 20 (69)
T ss_dssp CCGGGTCCCTTTCCCCEE
T ss_pred hHHHhheeCCCCCCcCeE
Confidence 344444456666655543
No 147
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=41.05 E-value=2.3 Score=28.57 Aligned_cols=16 Identities=25% Similarity=0.503 Sum_probs=14.2
Q ss_pred CcCCeechhHHHHHHh
Q 028139 178 KCEHHFHLACIFEWME 193 (213)
Q Consensus 178 ~CgH~Fh~~CI~~Wl~ 193 (213)
.|||.||..|-..|=.
T Consensus 55 ~C~~~FC~~C~~~wH~ 70 (80)
T 2jmo_A 55 GCGFAFCRECKEAYHE 70 (80)
T ss_dssp CCSCCEETTTTEECCS
T ss_pred CCCCeeccccCccccC
Confidence 6999999999999855
No 148
>3vhs_A ATPase wrnip1; zinc finger, ubiquitin-binding domain, ubiquitin binding, ME binding protein; 1.90A {Homo sapiens}
Probab=40.78 E-value=7 Score=20.51 Aligned_cols=10 Identities=60% Similarity=1.235 Sum_probs=6.6
Q ss_pred Cccccccccc
Q 028139 197 TCPVCNQEMI 206 (213)
Q Consensus 197 ~CPvCr~~l~ 206 (213)
.||+|.+.|+
T Consensus 8 qcpvcqq~mp 17 (29)
T 3vhs_A 8 QCPVCQQMMP 17 (29)
T ss_dssp ECTTTCCEEE
T ss_pred eChHHHHhCc
Confidence 3788876553
No 149
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=40.63 E-value=5.5 Score=25.07 Aligned_cols=43 Identities=28% Similarity=0.542 Sum_probs=26.0
Q ss_pred CCCccccccccccCCCCeEEcC--cC-CeechhHHHHHHhc----CCCcccccc
Q 028139 157 EEDVCPTCLEEYDAENPRIITK--CE-HHFHLACIFEWMER----SDTCPVCNQ 203 (213)
Q Consensus 157 e~~~C~ICle~~~~~~~~~~l~--Cg-H~Fh~~CI~~Wl~~----~~~CPvCr~ 203 (213)
+...| ||..... +.-+..-. |. .-||..|+. |.. +=.||.|++
T Consensus 8 e~~yC-~C~~~~~-g~mi~CD~~~C~~~wfH~~Cvg--l~~~p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 8 EPTYC-LCHQVSY-GEMIGCDNPDCPIEWFHFACVD--LTTKPKGKWFCPRCVQ 57 (59)
T ss_dssp CCEET-TTTEECC-SEEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCcEE-ECCCCCC-CCeeEeeCCCCCCCCEecccCC--cccCCCCCEECcCccC
Confidence 44456 9988653 32222233 55 589999997 433 235888865
No 150
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=40.52 E-value=10 Score=27.03 Aligned_cols=46 Identities=15% Similarity=0.462 Sum_probs=30.9
Q ss_pred ccccccccccCCCCeEEcCcCCeechhHHHHHHhcC----CCcccccccc
Q 028139 160 VCPTCLEEYDAENPRIITKCEHHFHLACIFEWMERS----DTCPVCNQEM 205 (213)
Q Consensus 160 ~C~ICle~~~~~~~~~~l~CgH~Fh~~CI~~Wl~~~----~~CPvCr~~l 205 (213)
.|.||...-..+.-+..-.|...||..|+.+=|... =.||.|+..+
T Consensus 60 ~C~~C~~~~~~~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~~~ 109 (114)
T 2kwj_A 60 SCILCGTSENDDQLLFCDDCDRGYHMYCLNPPVAEPPEGSWSCHLCWELL 109 (114)
T ss_dssp CCTTTTCCTTTTTEEECSSSCCEEETTTSSSCCSSCCSSCCCCHHHHHHH
T ss_pred ccCcccccCCCCceEEcCCCCccccccccCCCccCCCCCCeECccccchh
Confidence 588887754444445556789999999998644331 2488886543
No 151
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=40.00 E-value=26 Score=24.82 Aligned_cols=49 Identities=12% Similarity=0.236 Sum_probs=25.3
Q ss_pred CCccccccccccCCCCeEEcCcCCeechhHHHHHHhcCCCccccccccc
Q 028139 158 EDVCPTCLEEYDAENPRIITKCEHHFHLACIFEWMERSDTCPVCNQEMI 206 (213)
Q Consensus 158 ~~~C~ICle~~~~~~~~~~l~CgH~Fh~~CI~~Wl~~~~~CPvCr~~l~ 206 (213)
=..|..|-..+..........=|..||..|..+-+.....|..|.+.|.
T Consensus 29 CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~~~~~C~~C~~~I~ 77 (131)
T 2xjy_A 29 CLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIR 77 (131)
T ss_dssp TCBCTTTCCBCSSTTCCEEEETTEEECHHHHHHHHCCCEECTTTCCEEC
T ss_pred HcccCcCCCccccCCCeEEEECCEEeecCchhhhCCCccChhhcCCccC
Confidence 3456666665542111222334566666666654433335777766554
No 152
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=39.65 E-value=22 Score=22.98 Aligned_cols=39 Identities=18% Similarity=0.463 Sum_probs=27.5
Q ss_pred CCCccccccccccCCCCeEEcCcCCeechhHHHHHHhcCCCccccccccc
Q 028139 157 EEDVCPTCLEEYDAENPRIITKCEHHFHLACIFEWMERSDTCPVCNQEMI 206 (213)
Q Consensus 157 e~~~C~ICle~~~~~~~~~~l~CgH~Fh~~CI~~Wl~~~~~CPvCr~~l~ 206 (213)
....|..|-+.+..+ .+.--+..||..|. +|-.|++.|.
T Consensus 14 ~~~~C~~C~~~I~~~---~~~a~~~~~H~~CF--------~C~~C~~~L~ 52 (79)
T 1x62_A 14 KLPMCDKCGTGIVGV---FVKLRDRHRHPECY--------VCTDCGTNLK 52 (79)
T ss_dssp CCCCCSSSCCCCCSS---CEECSSCEECTTTT--------SCSSSCCCHH
T ss_pred CCCccccCCCCccCc---EEEECcceeCcCcC--------eeCCCCCCCC
Confidence 446799999887642 34446789998884 4888877763
No 153
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=39.48 E-value=22 Score=25.19 Aligned_cols=49 Identities=10% Similarity=-0.016 Sum_probs=34.5
Q ss_pred CccccccccccCCCCeEEcCcCCeechhHHHHHHhcCCCcccccccccC
Q 028139 159 DVCPTCLEEYDAENPRIITKCEHHFHLACIFEWMERSDTCPVCNQEMIF 207 (213)
Q Consensus 159 ~~C~ICle~~~~~~~~~~l~CgH~Fh~~CI~~Wl~~~~~CPvCr~~l~~ 207 (213)
..|..|-..+..........=|..||..|..+-+..+..|-.|.+.|..
T Consensus 33 F~C~~C~~~L~~~~~~~~~~~g~~yC~~cy~~~f~~~~~C~~C~~~I~~ 81 (122)
T 1m3v_A 33 LKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGAGGSGGHMGSG 81 (122)
T ss_dssp HCCSSSCCCTTTSEECCEEETTEEECHHHHHHHHCCCCSSSCSSCCSCC
T ss_pred CCcCCCCCcccccCCeEEEECCeeecHHHHHHHcCCCCccccCCCCcCc
Confidence 5688888777421112234457889999998877766689999987764
No 154
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=39.27 E-value=21 Score=22.46 Aligned_cols=40 Identities=20% Similarity=0.562 Sum_probs=26.4
Q ss_pred CCccccccccccC--CCCeEEcCcCCeechhHHHHHHhcCCCccccccccc
Q 028139 158 EDVCPTCLEEYDA--ENPRIITKCEHHFHLACIFEWMERSDTCPVCNQEMI 206 (213)
Q Consensus 158 ~~~C~ICle~~~~--~~~~~~l~CgH~Fh~~CI~~Wl~~~~~CPvCr~~l~ 206 (213)
...|..|-+.+.. +.. ++..-+..||..|. +|-.|++.|.
T Consensus 5 ~~~C~~C~~~I~~~~~~~-~~~a~~~~wH~~CF--------~C~~C~~~L~ 46 (72)
T 1x4l_A 5 SSGCAGCTNPISGLGGTK-YISFEERQWHNDCF--------NCKKCSLSLV 46 (72)
T ss_dssp SCSBTTTTBCCCCSSSCS-CEECSSCEECTTTC--------BCSSSCCBCT
T ss_pred CCCCcCCCccccCCCCcc-eEEECCcccCcccC--------EeccCCCcCC
Confidence 3568888887764 222 23346788888773 5778887764
No 155
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=38.49 E-value=13 Score=26.23 Aligned_cols=12 Identities=25% Similarity=0.844 Sum_probs=10.6
Q ss_pred echhHHHHHHhc
Q 028139 183 FHLACIFEWMER 194 (213)
Q Consensus 183 Fh~~CI~~Wl~~ 194 (213)
||..|+.+|+..
T Consensus 43 FCRNCLskWy~~ 54 (105)
T 2o35_A 43 FCRNCLSNWYRE 54 (105)
T ss_dssp CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999999953
No 156
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=38.28 E-value=13 Score=26.15 Aligned_cols=11 Identities=27% Similarity=0.951 Sum_probs=10.3
Q ss_pred echhHHHHHHh
Q 028139 183 FHLACIFEWME 193 (213)
Q Consensus 183 Fh~~CI~~Wl~ 193 (213)
||..|+.+|+.
T Consensus 42 FCRNCLskWy~ 52 (104)
T 3fyb_A 42 FCRNCLAKWLM 52 (104)
T ss_dssp CCHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999995
No 157
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=37.80 E-value=26 Score=23.00 Aligned_cols=48 Identities=17% Similarity=0.382 Sum_probs=30.4
Q ss_pred CCCccccccccccCCCCeEEc--CcCCeechhHHHHHHh---------cCCCcccccccc
Q 028139 157 EEDVCPTCLEEYDAENPRIIT--KCEHHFHLACIFEWME---------RSDTCPVCNQEM 205 (213)
Q Consensus 157 e~~~C~ICle~~~~~~~~~~l--~CgH~Fh~~CI~~Wl~---------~~~~CPvCr~~l 205 (213)
+...| ||-.....+.-+..- .|..=||..|+.---. .+-.||.|+...
T Consensus 15 ~~~~C-iC~~~~~~g~MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~~ 73 (78)
T 1wew_A 15 IKVRC-VCGNSLETDSMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLTS 73 (78)
T ss_dssp CCCCC-SSCCCCCCSCEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHCC
T ss_pred CCEEe-ECCCcCCCCCEEEECCccCCccccCEEEccccccccccccCCCCEECCCCCccc
Confidence 44567 898874444333334 6889999999863211 244699997643
No 158
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=37.28 E-value=2.2 Score=25.92 Aligned_cols=13 Identities=38% Similarity=0.943 Sum_probs=9.6
Q ss_pred CCcccccccccCC
Q 028139 196 DTCPVCNQEMIFD 208 (213)
Q Consensus 196 ~~CPvCr~~l~~~ 208 (213)
-.||+|...+.++
T Consensus 24 IrCpyCGyrii~K 36 (48)
T 4ayb_P 24 VRCPYCGYKIIFM 36 (48)
T ss_dssp SCCTTTCCSCEEC
T ss_pred cccCccCcEEEEE
Confidence 4699998877554
No 159
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=37.18 E-value=28 Score=22.75 Aligned_cols=40 Identities=25% Similarity=0.525 Sum_probs=26.5
Q ss_pred CCCccccccccccCCCCeEEcCcCCeechhHHHHHHhcCCCccccccccc
Q 028139 157 EEDVCPTCLEEYDAENPRIITKCEHHFHLACIFEWMERSDTCPVCNQEMI 206 (213)
Q Consensus 157 e~~~C~ICle~~~~~~~~~~l~CgH~Fh~~CI~~Wl~~~~~CPvCr~~l~ 206 (213)
....|..|-..+...+.+ ..=+..||..| -+|-.|++.|.
T Consensus 14 ~~~~C~~C~~~I~~~e~v--~a~~~~wH~~C--------F~C~~C~~~L~ 53 (82)
T 2co8_A 14 AGDLCALCGEHLYVLERL--CVNGHFFHRSC--------FRCHTCEATLW 53 (82)
T ss_dssp SSCBCSSSCCBCCTTTBC--CBTTBCCBTTT--------CBCSSSCCBCC
T ss_pred CCCCCcccCCCcccceEE--EECCCeeCCCc--------CEEcCCCCCcC
Confidence 346799999887544333 23477888887 34777877664
No 160
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=36.57 E-value=43 Score=21.50 Aligned_cols=41 Identities=22% Similarity=0.476 Sum_probs=26.6
Q ss_pred CCccccccccccCCCCeEEcCcCCeechhHHHHHHhcCCCcccccccccC
Q 028139 158 EDVCPTCLEEYDAENPRIITKCEHHFHLACIFEWMERSDTCPVCNQEMIF 207 (213)
Q Consensus 158 ~~~C~ICle~~~~~~~~~~l~CgH~Fh~~CI~~Wl~~~~~CPvCr~~l~~ 207 (213)
...|..|-..+..++.. +..=+..||..|. +|-.|++.|..
T Consensus 15 ~~~C~~C~~~I~~~~~~-~~a~~~~~H~~CF--------~C~~C~~~L~~ 55 (82)
T 1x63_A 15 SPKCKGCFKAIVAGDQN-VEYKGTVWHKDCF--------TCSNCKQVIGT 55 (82)
T ss_dssp SCBCSSSCCBCCSSSCE-EECSSCEEETTTC--------CCSSSCCCCTT
T ss_pred CCcCccCCcccccCceE-EEECccccccccC--------chhhCCCccCC
Confidence 35688888877654433 3334778887773 47788777643
No 161
>2csz_A Synaptotagmin-like protein 4; exophilin 2, granuphilin, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=35.98 E-value=23 Score=23.64 Aligned_cols=33 Identities=18% Similarity=0.449 Sum_probs=24.9
Q ss_pred CCCCccccccccccC--CCCeEEcCcCCeechhHH
Q 028139 156 EEEDVCPTCLEEYDA--ENPRIITKCEHHFHLACI 188 (213)
Q Consensus 156 ee~~~C~ICle~~~~--~~~~~~l~CgH~Fh~~CI 188 (213)
..+..|+.|.+.|.. ........|.|..|.+|=
T Consensus 23 ~~~r~CarC~~~LG~l~~~g~~C~~Ck~rVC~~Cr 57 (76)
T 2csz_A 23 YSDRTCARCQESLGRLSPKTNTCRGCNHLVCRDCR 57 (76)
T ss_dssp CCCCBCSSSCCBCSSSCTTTSEETTTTEECCTTSE
T ss_pred CCccchhhhCccccccccCCCcCcccChhhccccc
Confidence 456789999999843 344567789999998884
No 162
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=35.80 E-value=3.7 Score=27.83 Aligned_cols=34 Identities=24% Similarity=0.588 Sum_probs=20.9
Q ss_pred cccccccccC--C-CCeEEcCcCCeechhHHHHHHhc
Q 028139 161 CPTCLEEYDA--E-NPRIITKCEHHFHLACIFEWMER 194 (213)
Q Consensus 161 C~ICle~~~~--~-~~~~~l~CgH~Fh~~CI~~Wl~~ 194 (213)
||-|-..+.. + ..+....|++.||..|-..|=+.
T Consensus 28 CP~C~~~~~~~~~~~~v~C~~C~~~FC~~C~~~w~~~ 64 (86)
T 2ct7_A 28 CAQCSFGFIYEREQLEATCPQCHQTFCVRCKRQWEEQ 64 (86)
T ss_dssp CSSSCCCEECCCSCSCEECTTTCCEECSSSCSBCCTT
T ss_pred CcCCCchheecCCCCceEeCCCCCccccccCCchhhc
Confidence 6655443311 1 22444569999999999888333
No 163
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=33.96 E-value=5.6 Score=25.94 Aligned_cols=16 Identities=13% Similarity=0.152 Sum_probs=7.1
Q ss_pred HHhcCCCccccccccc
Q 028139 191 WMERSDTCPVCNQEMI 206 (213)
Q Consensus 191 Wl~~~~~CPvCr~~l~ 206 (213)
||..--.||+|+.++.
T Consensus 6 ~LLeiL~CP~ck~~L~ 21 (67)
T 2jny_A 6 QLLEVLACPKDKGPLR 21 (67)
T ss_dssp GGTCCCBCTTTCCBCE
T ss_pred HHHHHhCCCCCCCcCe
Confidence 3333344555554443
No 164
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=33.06 E-value=22 Score=27.24 Aligned_cols=24 Identities=29% Similarity=0.513 Sum_probs=16.1
Q ss_pred eEEcCcCCeechhHHHHHHhcCCCccccccc
Q 028139 174 RIITKCEHHFHLACIFEWMERSDTCPVCNQE 204 (213)
Q Consensus 174 ~~~l~CgH~Fh~~CI~~Wl~~~~~CPvCr~~ 204 (213)
-++..|||++-. .--..||+|..+
T Consensus 139 ~~C~~CG~i~~~-------~~p~~CP~Cg~~ 162 (170)
T 3pwf_A 139 YICPICGYTAVD-------EAPEYCPVCGAP 162 (170)
T ss_dssp EECTTTCCEEES-------CCCSBCTTTCCB
T ss_pred eEeCCCCCeeCC-------CCCCCCCCCCCC
Confidence 456778888752 233589999753
No 165
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=33.06 E-value=24 Score=21.90 Aligned_cols=42 Identities=17% Similarity=0.476 Sum_probs=28.7
Q ss_pred CCCccccccccccCCCCeEEcCcCCeechhHHHHHHhcCCCcccccccccC
Q 028139 157 EEDVCPTCLEEYDAENPRIITKCEHHFHLACIFEWMERSDTCPVCNQEMIF 207 (213)
Q Consensus 157 e~~~C~ICle~~~~~~~~~~l~CgH~Fh~~CI~~Wl~~~~~CPvCr~~l~~ 207 (213)
....|..|-..+...+.+ +..=+..||..|. +|-.|++.|..
T Consensus 10 ~~~~C~~C~~~i~~~e~~-~~~~~~~~H~~CF--------~C~~C~~~L~~ 51 (72)
T 3f6q_B 10 ASATCERCKGGFAPAEKI-VNSNGELYHEQCF--------VCAQCFQQFPE 51 (72)
T ss_dssp TTCBCTTTCCBCCTTCEE-EEETTEEEETTTS--------SCTTTCCCCGG
T ss_pred CCccchhcCccccCCceE-EEeCcCeeCcCCC--------cccCCCCCCCC
Confidence 345799999987654432 3345778998885 58888887653
No 166
>2aus_D NOP10, ribosome biogenesis protein NOP10; isomerase, structural protein, isomerase-structural protein; 2.10A {Pyrococcus abyssi} PDB: 3lwr_B 3lwo_B* 3lwq_B* 3lwp_B 3lwv_B 3hax_C* 2hvy_C* 3hay_C* 2ey4_E 3hjw_B* 2rfk_B* 3hjy_B 3mqk_B
Probab=33.01 E-value=19 Score=22.84 Aligned_cols=19 Identities=32% Similarity=0.849 Sum_probs=15.4
Q ss_pred CCCcccccccccCCCCCCC
Q 028139 195 SDTCPVCNQEMIFDLPVDY 213 (213)
Q Consensus 195 ~~~CPvCr~~l~~~~~~~~ 213 (213)
+..||+|......-+|..|
T Consensus 17 k~~CP~CG~~t~~ahParf 35 (60)
T 2aus_D 17 KETCPVCGEKTKVAHPPRF 35 (60)
T ss_dssp SSBCTTTCSBCEESSCCCC
T ss_pred cccCcCCCCccCCCCCCCC
Confidence 6779999998888777765
No 167
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=32.71 E-value=39 Score=21.44 Aligned_cols=40 Identities=18% Similarity=0.579 Sum_probs=26.1
Q ss_pred CccccccccccC-CCCeEEcCcCCeechhHHHHHHhcCCCccccccccc
Q 028139 159 DVCPTCLEEYDA-ENPRIITKCEHHFHLACIFEWMERSDTCPVCNQEMI 206 (213)
Q Consensus 159 ~~C~ICle~~~~-~~~~~~l~CgH~Fh~~CI~~Wl~~~~~CPvCr~~l~ 206 (213)
..|..|-..+.. +....+..-+..||..|. +|-.|++.|.
T Consensus 6 ~~C~~C~~~I~~~g~~~~~~a~~~~wH~~CF--------~C~~C~~~L~ 46 (76)
T 1x68_A 6 SGCVACSKPISGLTGAKFICFQDSQWHSECF--------NCGKCSVSLV 46 (76)
T ss_dssp CCCTTTCCCCCTTTTCCEEEETTEEEEGGGC--------BCTTTCCBCS
T ss_pred CCCccCCCcccCCCCceeEEECCcccCcccC--------ChhhCCCcCC
Confidence 568889888764 111234446788898873 4778877764
No 168
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=32.07 E-value=53 Score=20.35 Aligned_cols=40 Identities=20% Similarity=0.403 Sum_probs=24.6
Q ss_pred CccccccccccCCCCeEEcCcCCeechhHHHHHHhcCCCcccccccccC
Q 028139 159 DVCPTCLEEYDAENPRIITKCEHHFHLACIFEWMERSDTCPVCNQEMIF 207 (213)
Q Consensus 159 ~~C~ICle~~~~~~~~~~l~CgH~Fh~~CI~~Wl~~~~~CPvCr~~l~~ 207 (213)
..|..|-..+..... ++..-+..||..|. +|-.|++.|..
T Consensus 6 ~~C~~C~~~I~~~~~-~~~a~~~~~H~~CF--------~C~~C~~~L~~ 45 (72)
T 1wyh_A 6 SGCSACGETVMPGSR-KLEYGGQTWHEHCF--------LCSGCEQPLGS 45 (72)
T ss_dssp CBCSSSCCBCCSSSC-EECSTTCCEETTTC--------BCTTTCCBTTT
T ss_pred CCCccCCCccccCcc-EEEECccccCcccC--------eECCCCCcCCC
Confidence 468888877754322 33445777887763 47777776643
No 169
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=31.81 E-value=37 Score=22.43 Aligned_cols=38 Identities=16% Similarity=0.463 Sum_probs=24.3
Q ss_pred CCccccccccccCCCCeEEcCcCCeechhHHHHHHhcCCCccccccccc
Q 028139 158 EDVCPTCLEEYDAENPRIITKCEHHFHLACIFEWMERSDTCPVCNQEMI 206 (213)
Q Consensus 158 ~~~C~ICle~~~~~~~~~~l~CgH~Fh~~CI~~Wl~~~~~CPvCr~~l~ 206 (213)
...|..|-..+.. . .+..-+..||..|. +|-.|++.|.
T Consensus 25 ~~~C~~C~~~I~~-~--~v~a~~~~~H~~CF--------~C~~C~~~L~ 62 (90)
T 2dar_A 25 TPMCAHCNQVIRG-P--FLVALGKSWHPEEF--------NCAHCKNTMA 62 (90)
T ss_dssp CCBBSSSCCBCCS-C--EEEETTEEECTTTC--------BCSSSCCBCS
T ss_pred CCCCccCCCEecc-e--EEEECCccccccCC--------ccCCCCCCCC
Confidence 4568888887742 2 23345778887763 4777777664
No 170
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=31.70 E-value=22 Score=22.24 Aligned_cols=38 Identities=21% Similarity=0.529 Sum_probs=22.4
Q ss_pred CccccccccccCCCCeEEcCcCCeechhHHHHHHhcCCCcccccccccC
Q 028139 159 DVCPTCLEEYDAENPRIITKCEHHFHLACIFEWMERSDTCPVCNQEMIF 207 (213)
Q Consensus 159 ~~C~ICle~~~~~~~~~~l~CgH~Fh~~CI~~Wl~~~~~CPvCr~~l~~ 207 (213)
..|..|-+.+.. . .+..-+..||..|. +|-.|++.|..
T Consensus 6 ~~C~~C~~~I~~-~--~~~a~~~~~H~~CF--------~C~~C~~~L~~ 43 (70)
T 2d8x_A 6 SGCHQCGEFIIG-R--VIKAMNNSWHPECF--------RCDLCQEVLAD 43 (70)
T ss_dssp SBCSSSCCBCCS-C--CEEETTEEECTTTS--------BCSSSCCBCSS
T ss_pred CcCccCCCEecc-e--EEEECcccccccCC--------EeCCCCCcCCC
Confidence 457777776653 2 22334667777663 46677666543
No 171
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=31.00 E-value=16 Score=27.41 Aligned_cols=28 Identities=18% Similarity=0.500 Sum_probs=19.5
Q ss_pred CeEEcCcCCeechhHHHHHHhcCCCccccccccc
Q 028139 173 PRIITKCEHHFHLACIFEWMERSDTCPVCNQEMI 206 (213)
Q Consensus 173 ~~~~l~CgH~Fh~~CI~~Wl~~~~~CPvCr~~l~ 206 (213)
......|||.|-.. .....||.|..++.
T Consensus 132 ~y~C~~Cg~~~~~~------~~~~~Cp~CG~~~~ 159 (165)
T 2lcq_A 132 RYVCIGCGRKFSTL------PPGGVCPDCGSKVK 159 (165)
T ss_dssp CEEESSSCCEESSC------CGGGBCTTTCCBEE
T ss_pred EEECCCCCCcccCC------CCCCcCCCCCCcce
Confidence 35677899998643 22347999988753
No 172
>1lv3_A Hypothetical protein YACG; zinc finger, rubredoxin knuckle, C4 tetrahedral Zn+2, antiparallel beta strand and alpha helix, NESG project; NMR {Escherichia coli} SCOP: g.39.1.9
Probab=30.21 E-value=18 Score=23.60 Aligned_cols=13 Identities=23% Similarity=0.984 Sum_probs=9.1
Q ss_pred CCcccccccccCC
Q 028139 196 DTCPVCNQEMIFD 208 (213)
Q Consensus 196 ~~CPvCr~~l~~~ 208 (213)
..||+|++++.+.
T Consensus 10 ~~CP~Cgkp~~W~ 22 (68)
T 1lv3_A 10 VNCPTCGKTVVWG 22 (68)
T ss_dssp EECTTTCCEEECS
T ss_pred CcCCCCCCccccc
Confidence 3588888877643
No 173
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=30.15 E-value=50 Score=20.50 Aligned_cols=39 Identities=18% Similarity=0.457 Sum_probs=23.5
Q ss_pred CccccccccccCCCCeEEcCcCCeechhHHHHHHhcCCCccccccccc
Q 028139 159 DVCPTCLEEYDAENPRIITKCEHHFHLACIFEWMERSDTCPVCNQEMI 206 (213)
Q Consensus 159 ~~C~ICle~~~~~~~~~~l~CgH~Fh~~CI~~Wl~~~~~CPvCr~~l~ 206 (213)
..|..|-+.+...+.+ +..=+..||..|. +|-.|++.|.
T Consensus 6 ~~C~~C~~~I~~~~~~-~~a~~~~~H~~CF--------~C~~C~~~L~ 44 (72)
T 1x4k_A 6 SGCQECKKTIMPGTRK-MEYKGSSWHETCF--------ICHRCQQPIG 44 (72)
T ss_dssp CCBSSSCCCCCSSSCE-EEETTEEEETTTT--------CCSSSCCCCC
T ss_pred CCCccCCCcccCCceE-EEECcCeecccCC--------cccccCCccC
Confidence 4588888777543322 3334677777663 3677776654
No 174
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=29.93 E-value=50 Score=21.68 Aligned_cols=39 Identities=18% Similarity=0.450 Sum_probs=23.8
Q ss_pred CCccccccccccCCCCeEEcCcCCeechhHHHHHHhcCCCcccccccccC
Q 028139 158 EDVCPTCLEEYDAENPRIITKCEHHFHLACIFEWMERSDTCPVCNQEMIF 207 (213)
Q Consensus 158 ~~~C~ICle~~~~~~~~~~l~CgH~Fh~~CI~~Wl~~~~~CPvCr~~l~~ 207 (213)
...|..|-+.+.. . .+..-+..||..|. +|-.|++.|..
T Consensus 25 ~~~C~~C~~~I~~-~--~~~a~~~~~H~~CF--------~C~~C~~~L~~ 63 (89)
T 1x64_A 25 MPLCDKCGSGIVG-A--VVKARDKYRHPECF--------VCADCNLNLKQ 63 (89)
T ss_dssp CCBCTTTCCBCCS-C--CEESSSCEECTTTC--------CCSSSCCCTTT
T ss_pred CCCcccCCCEecc-c--EEEECCceECccCC--------EecCCCCCCCC
Confidence 3458888777654 1 23345677787762 37777776643
No 175
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=28.48 E-value=33 Score=24.27 Aligned_cols=34 Identities=15% Similarity=0.386 Sum_probs=17.7
Q ss_pred CccccccccccCCCCeEEcCcCCeechhHHHHHHh
Q 028139 159 DVCPTCLEEYDAENPRIITKCEHHFHLACIFEWME 193 (213)
Q Consensus 159 ~~C~ICle~~~~~~~~~~l~CgH~Fh~~CI~~Wl~ 193 (213)
..|.+|-..+..+.. ....=+..||..|..+.+.
T Consensus 37 F~C~~C~~~L~~g~~-f~~~~g~~yC~~cy~~~~~ 70 (123)
T 2l3k_A 37 FKCAACQKHFSVGDR-YLLINSDIVCEQDIYEWTK 70 (123)
T ss_dssp CBCTTTCCBCCTTCE-EEECSSSEEEGGGHHHHHH
T ss_pred CccccCCCCCCCCCc-EEeeCCEEEcHHHhHHHhc
Confidence 456666655533322 2233456666666666554
No 176
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=28.42 E-value=53 Score=20.66 Aligned_cols=42 Identities=17% Similarity=0.476 Sum_probs=27.0
Q ss_pred CCCccccccccccCCCCeEEcCcCCeechhHHHHHHhcCCCcccccccccC
Q 028139 157 EEDVCPTCLEEYDAENPRIITKCEHHFHLACIFEWMERSDTCPVCNQEMIF 207 (213)
Q Consensus 157 e~~~C~ICle~~~~~~~~~~l~CgH~Fh~~CI~~Wl~~~~~CPvCr~~l~~ 207 (213)
....|..|-+.+...+.+ +..-|..||..|. +|-.|++.|..
T Consensus 10 ~~~~C~~C~~~I~~~~~~-~~a~~~~~H~~CF--------~C~~C~~~L~~ 51 (77)
T 1g47_A 10 ASATCERCKGGFAPAEKI-VNSNGELYHEQCF--------VCAQCFQQFPE 51 (77)
T ss_dssp CCCBCSSSCCBCCSTTTC-EEETTEEECTTTC--------CCTTTCCCCGG
T ss_pred CCCCchhcCCccCCCceE-EEeCccEeccccC--------eECCCCCCCCC
Confidence 345799999887643322 2235778888773 47778777643
No 177
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=28.36 E-value=22 Score=22.97 Aligned_cols=47 Identities=19% Similarity=0.184 Sum_probs=30.3
Q ss_pred CCCccccccccccCCC-CeEEcCcCCeechhHHHHHH----hcCCCccccccc
Q 028139 157 EEDVCPTCLEEYDAEN-PRIITKCEHHFHLACIFEWM----ERSDTCPVCNQE 204 (213)
Q Consensus 157 e~~~C~ICle~~~~~~-~~~~l~CgH~Fh~~CI~~Wl----~~~~~CPvCr~~ 204 (213)
+...| ||...+..+. -+..-.|..=||..|+.--. ...-.||.|+..
T Consensus 15 ~~~~C-~C~~~~~~g~~mI~Cd~C~~W~H~~Cvg~~~~~~~~~~~~C~~C~~~ 66 (72)
T 1wee_A 15 WKVDC-KCGTKDDDGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIEL 66 (72)
T ss_dssp SEECC-TTCCCSCCSSCEEECSSSCEEEETTTTTCCTTSCCCSCCCCHHHHHH
T ss_pred cceEe-eCCCccCCCCcEEECCCCCCccCCeeeccCccccCCCcEECCCccCC
Confidence 34568 7988765443 33445688899999986432 123469999654
No 178
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=28.30 E-value=36 Score=22.05 Aligned_cols=44 Identities=25% Similarity=0.419 Sum_probs=28.1
Q ss_pred cccccccccCC-CCeEEcCcCCeechhHHHHHHh-----cCCCccccccc
Q 028139 161 CPTCLEEYDAE-NPRIITKCEHHFHLACIFEWME-----RSDTCPVCNQE 204 (213)
Q Consensus 161 C~ICle~~~~~-~~~~~l~CgH~Fh~~CI~~Wl~-----~~~~CPvCr~~ 204 (213)
--||...+..+ .-+..-.|.-=||..|+.---. ..-.||.|+..
T Consensus 12 yCiC~~~~~~~~~MI~Cd~C~~WfH~~Cvg~~~~~~~~~~~~~C~~C~~~ 61 (75)
T 3kqi_A 12 YCVCRLPYDVTRFMIECDACKDWFHGSCVGVEEEEAPDIDIYHCPNCEKT 61 (75)
T ss_dssp ETTTTEECCTTSCEEECTTTCCEEEHHHHTCCTTTGGGBSSCCCHHHHHH
T ss_pred EEECCCcCCCCCCEEEcCCCCCCEecccccccccccCCCCEEECCCCccc
Confidence 44898877533 3333456889999999954321 23469999753
No 179
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=28.19 E-value=4.4 Score=25.41 Aligned_cols=9 Identities=33% Similarity=1.280 Sum_probs=4.2
Q ss_pred Ccccccccc
Q 028139 197 TCPVCNQEM 205 (213)
Q Consensus 197 ~CPvCr~~l 205 (213)
.||+|+..+
T Consensus 12 ~CP~c~~~L 20 (56)
T 2kpi_A 12 ACPACHAPL 20 (56)
T ss_dssp CCSSSCSCE
T ss_pred eCCCCCCcc
Confidence 455554443
No 180
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=27.90 E-value=13 Score=22.34 Aligned_cols=8 Identities=50% Similarity=1.356 Sum_probs=6.3
Q ss_pred Cccccccc
Q 028139 197 TCPVCNQE 204 (213)
Q Consensus 197 ~CPvCr~~ 204 (213)
.||+|...
T Consensus 32 ~CP~Cg~~ 39 (46)
T 6rxn_A 32 CCPVCGVS 39 (46)
T ss_dssp BCTTTCCB
T ss_pred cCcCCCCc
Confidence 79999763
No 181
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=26.82 E-value=27 Score=26.69 Aligned_cols=26 Identities=15% Similarity=0.309 Sum_probs=11.0
Q ss_pred CCeechhHHHHHHhcCCCcccccccc
Q 028139 180 EHHFHLACIFEWMERSDTCPVCNQEM 205 (213)
Q Consensus 180 gH~Fh~~CI~~Wl~~~~~CPvCr~~l 205 (213)
|..||..|..+-+..+..|..|.+.|
T Consensus 54 g~~yC~~cy~~~~~~~~~C~~C~~~I 79 (188)
T 1rut_X 54 GMILCRNDYIRLFGNSGACSACGQSI 79 (188)
T ss_dssp TEEECHHHHHHHHSCCEECTTTCCEE
T ss_pred CccccccccccccccCCccccCCCcc
Confidence 44455554444332222355554444
No 182
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=26.66 E-value=24 Score=27.38 Aligned_cols=24 Identities=17% Similarity=0.440 Sum_probs=14.1
Q ss_pred EEcCcCCeechhHHHHHHhcCCCccccccc
Q 028139 175 IITKCEHHFHLACIFEWMERSDTCPVCNQE 204 (213)
Q Consensus 175 ~~l~CgH~Fh~~CI~~Wl~~~~~CPvCr~~ 204 (213)
++..|||+|-.. ..-..||+|..+
T Consensus 157 ~C~~CG~~~~g~------~~p~~CP~C~~~ 180 (191)
T 1lko_A 157 RCRNCGYVHEGT------GAPELCPACAHP 180 (191)
T ss_dssp EETTTCCEEEEE------ECCSBCTTTCCB
T ss_pred EECCCCCEeeCC------CCCCCCCCCcCC
Confidence 345567765421 223489999774
No 183
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=26.49 E-value=25 Score=25.00 Aligned_cols=25 Identities=20% Similarity=0.457 Sum_probs=17.5
Q ss_pred eEEcCcCCeechhHHHHHHhcCC-Cccccccc
Q 028139 174 RIITKCEHHFHLACIFEWMERSD-TCPVCNQE 204 (213)
Q Consensus 174 ~~~l~CgH~Fh~~CI~~Wl~~~~-~CPvCr~~ 204 (213)
.....|||.|-.. .... .||.|...
T Consensus 74 ~~C~~CG~~~e~~------~~~~~~CP~Cgs~ 99 (119)
T 2kdx_A 74 LECKDCSHVFKPN------ALDYGVCEKCHSK 99 (119)
T ss_dssp EECSSSSCEECSC------CSTTCCCSSSSSC
T ss_pred EEcCCCCCEEeCC------CCCCCcCccccCC
Confidence 4456788888762 3456 79999765
No 184
>3c5k_A HD6, histone deacetylase 6; HDAC6, zinc finger, actin-binding, chromatin regulator, cytoplasm, hydrolase, metal-binding, nucleus, phosphoprotein; 1.55A {Homo sapiens} PDB: 3gv4_A 3phd_A
Probab=26.18 E-value=35 Score=24.11 Aligned_cols=24 Identities=13% Similarity=0.361 Sum_probs=18.9
Q ss_pred CCccccccccccCCCCeEEcCcCCeec
Q 028139 158 EDVCPTCLEEYDAENPRIITKCEHHFH 184 (213)
Q Consensus 158 ~~~C~ICle~~~~~~~~~~l~CgH~Fh 184 (213)
...|..|... ++.-+.|.|||++|
T Consensus 24 ~~~C~~C~~~---~~~W~CL~CG~vgC 47 (109)
T 3c5k_A 24 TQPCGDCGTI---QENWVCLSCYQVYC 47 (109)
T ss_dssp TCCCTTTCCC---SSEEEETTTCCEEE
T ss_pred CCcCccccCC---CCeeeeeecCcccc
Confidence 3569999874 45577899999997
No 185
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=26.04 E-value=54 Score=21.08 Aligned_cols=39 Identities=18% Similarity=0.423 Sum_probs=24.8
Q ss_pred CCCccccccccccCCCCeEEcCcCCeechhHHHHHHhcCCCccccccccc
Q 028139 157 EEDVCPTCLEEYDAENPRIITKCEHHFHLACIFEWMERSDTCPVCNQEMI 206 (213)
Q Consensus 157 e~~~C~ICle~~~~~~~~~~l~CgH~Fh~~CI~~Wl~~~~~CPvCr~~l~ 206 (213)
....|.-|-..+.. . .+.--+..||..| -+|-.|++.|.
T Consensus 14 ~~~~C~~C~~~I~~-~--~v~a~~~~~H~~C--------F~C~~C~~~L~ 52 (79)
T 2cor_A 14 GKYICQKCHAIIDE-Q--PLIFKNDPYHPDH--------FNCANCGKELT 52 (79)
T ss_dssp CCCBCTTTCCBCCS-C--CCCCSSSCCCTTT--------SBCSSSCCBCC
T ss_pred CCCCCccCCCEecc-e--EEEECcceeCCCC--------CEeCCCCCccC
Confidence 34568888887762 2 2334577788776 34777777665
No 186
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=26.02 E-value=27 Score=24.43 Aligned_cols=40 Identities=30% Similarity=0.546 Sum_probs=24.6
Q ss_pred CccccccccccCCCCeEEcCcCCeechhHHHHHHhcCCCccccccccc
Q 028139 159 DVCPTCLEEYDAENPRIITKCEHHFHLACIFEWMERSDTCPVCNQEMI 206 (213)
Q Consensus 159 ~~C~ICle~~~~~~~~~~l~CgH~Fh~~CI~~Wl~~~~~CPvCr~~l~ 206 (213)
..||+|..+++-.. ++.+|..|=.. ++....||-|.++|.
T Consensus 33 ~~CP~Cq~eL~~~g-------~~~hC~~C~~~-f~~~a~CPdC~q~Le 72 (101)
T 2jne_A 33 LHCPQCQHVLDQDN-------GHARCRSCGEF-IEMKALCPDCHQPLQ 72 (101)
T ss_dssp CBCSSSCSBEEEET-------TEEEETTTCCE-EEEEEECTTTCSBCE
T ss_pred ccCccCCCcceecC-------CEEECccccch-hhccccCcchhhHHH
Confidence 67999998763311 23335555332 345667999998874
No 187
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=25.69 E-value=20 Score=23.26 Aligned_cols=38 Identities=21% Similarity=0.518 Sum_probs=21.5
Q ss_pred CccccccccccCCCCeEEcCcCCeechhHHHHHHhcCCCccccccccc
Q 028139 159 DVCPTCLEEYDAENPRIITKCEHHFHLACIFEWMERSDTCPVCNQEMI 206 (213)
Q Consensus 159 ~~C~ICle~~~~~~~~~~l~CgH~Fh~~CI~~Wl~~~~~CPvCr~~l~ 206 (213)
..|..|-+.+..++. +..-+..||..|. +|-.|++.|.
T Consensus 8 ~~C~~C~~~I~~~~~--~~a~~~~~H~~CF--------~C~~C~~~L~ 45 (81)
T 1a7i_A 8 NKCGACGRTVYHAEE--VQCDGRSFHRCCF--------LCMVCRKNLD 45 (81)
T ss_dssp CBCSSSCCBCSSTTE--EEETTEEEESSSE--------ECSSSCCEEC
T ss_pred CcCcCcCccccCcee--EEeCCcccccccC--------ccCCCCCCCC
Confidence 457777776644332 2334667776663 2666666553
No 188
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=25.51 E-value=54 Score=19.99 Aligned_cols=38 Identities=13% Similarity=0.512 Sum_probs=25.0
Q ss_pred CccccccccccCCCCeEEcCcCCeechhHHHHHHhcCCCcccccccccC
Q 028139 159 DVCPTCLEEYDAENPRIITKCEHHFHLACIFEWMERSDTCPVCNQEMIF 207 (213)
Q Consensus 159 ~~C~ICle~~~~~~~~~~l~CgH~Fh~~CI~~Wl~~~~~CPvCr~~l~~ 207 (213)
..|+.|-+.+. +. .+..=+..||..| -+|-.|++.|..
T Consensus 6 ~~C~~C~~~I~-~~--~~~a~~~~~H~~C--------F~C~~C~~~L~~ 43 (66)
T 1nyp_A 6 PICGACRRPIE-GR--VVNAMGKQWHVEH--------FVCAKCEKPFLG 43 (66)
T ss_dssp CEETTTTEECC-SC--EECCTTSBEETTT--------CBCTTTCCBCSS
T ss_pred CCCcccCCEec-ce--EEEECccccccCc--------CEECCCCCCCCC
Confidence 46888888776 22 3444577888777 347788777653
No 189
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=25.29 E-value=45 Score=21.40 Aligned_cols=38 Identities=18% Similarity=0.547 Sum_probs=25.5
Q ss_pred CccccccccccCCCCeEEcCcCCeechhHHHHHHhcCCCcccccccccC
Q 028139 159 DVCPTCLEEYDAENPRIITKCEHHFHLACIFEWMERSDTCPVCNQEMIF 207 (213)
Q Consensus 159 ~~C~ICle~~~~~~~~~~l~CgH~Fh~~CI~~Wl~~~~~CPvCr~~l~~ 207 (213)
..|..|-..+.. . .+..-+..||..|. +|-.|++.|..
T Consensus 16 ~~C~~C~~~I~~-~--~v~a~~~~wH~~CF--------~C~~C~~~L~~ 53 (81)
T 1v6g_A 16 TRCFSCDQFIEG-E--VVSALGKTYHPDCF--------VCAVCRLPFPP 53 (81)
T ss_dssp CBCTTTCCBCCS-C--CEEETTEEECTTTS--------SCSSSCCCCCS
T ss_pred CcCccccCEecc-c--eEEECCceeCccCC--------ccccCCCCCCC
Confidence 469999888763 2 23345788888773 37777776653
No 190
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=25.18 E-value=76 Score=19.97 Aligned_cols=37 Identities=27% Similarity=0.682 Sum_probs=19.0
Q ss_pred CccccccccccCCCCeEEcCcCCeechhHHHHHHhcCCCccccccccc
Q 028139 159 DVCPTCLEEYDAENPRIITKCEHHFHLACIFEWMERSDTCPVCNQEMI 206 (213)
Q Consensus 159 ~~C~ICle~~~~~~~~~~l~CgH~Fh~~CI~~Wl~~~~~CPvCr~~l~ 206 (213)
..|.-|-..+.. ..+..-+..||..| -+|-.|++.|.
T Consensus 6 ~~C~~C~~~I~~---~~v~a~~~~wH~~C--------F~C~~C~~~L~ 42 (73)
T 1wig_A 6 SGCDSCEKYITG---RVLEAGEKHYHPSC--------ALCVRCGQMFA 42 (73)
T ss_dssp CSCSSSCCCCSS---CCBCCSSCCBCTTT--------SCCSSSCCCCC
T ss_pred CCcccCCCEecC---eeEEeCCCCCCCCc--------CEeCCCCCCCC
Confidence 346666665543 12333456666655 23555655554
No 191
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=25.16 E-value=73 Score=19.56 Aligned_cols=37 Identities=22% Similarity=0.580 Sum_probs=21.4
Q ss_pred CccccccccccCCCCeEEcCcCCeechhHHHHHHhcCCCccccccccc
Q 028139 159 DVCPTCLEEYDAENPRIITKCEHHFHLACIFEWMERSDTCPVCNQEMI 206 (213)
Q Consensus 159 ~~C~ICle~~~~~~~~~~l~CgH~Fh~~CI~~Wl~~~~~CPvCr~~l~ 206 (213)
..|..|-..+..+ .+..-+..||..|. +|-.|++.|.
T Consensus 6 ~~C~~C~~~I~~~---~~~a~~~~~H~~CF--------~C~~C~~~L~ 42 (70)
T 2d8z_A 6 SGCVQCKKPITTG---GVTYREQPWHKECF--------VCTACRKQLS 42 (70)
T ss_dssp CBCSSSCCBCCSS---EEESSSSEEETTTS--------BCSSSCCBCT
T ss_pred CCCcccCCeeccc---eEEECccccCCCCC--------ccCCCCCcCC
Confidence 4577777766532 13334667776662 3666766653
No 192
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=24.23 E-value=6.2 Score=25.75 Aligned_cols=12 Identities=0% Similarity=-0.202 Sum_probs=5.8
Q ss_pred CcccccccccCC
Q 028139 197 TCPVCNQEMIFD 208 (213)
Q Consensus 197 ~CPvCr~~l~~~ 208 (213)
.|+-|+..+...
T Consensus 28 iC~~cg~~YPI~ 39 (68)
T 2jr6_A 28 WSRQAKLAYPIK 39 (68)
T ss_dssp EETTTTEEEEEE
T ss_pred EcCCCCcEecCC
Confidence 455555544433
No 193
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.79 E-value=69 Score=20.30 Aligned_cols=37 Identities=19% Similarity=0.556 Sum_probs=23.5
Q ss_pred CccccccccccCCCCeEEcCcCCeechhHHHHHHhcCCCccccccccc
Q 028139 159 DVCPTCLEEYDAENPRIITKCEHHFHLACIFEWMERSDTCPVCNQEMI 206 (213)
Q Consensus 159 ~~C~ICle~~~~~~~~~~l~CgH~Fh~~CI~~Wl~~~~~CPvCr~~l~ 206 (213)
..|..|-+.+..+ .+..=+..||..|. +|-.|++.|.
T Consensus 16 ~~C~~C~~~I~~~---~v~a~~~~~H~~CF--------~C~~C~~~L~ 52 (80)
T 2cuq_A 16 PRCARCSKTLTQG---GVTYRDQPWHRECL--------VCTGCQTPLA 52 (80)
T ss_dssp CCCTTTCCCCCSC---CEESSSSEECTTTC--------BCSSSCCBCT
T ss_pred CcCCCCCCEecCc---EEEECCchhhhhhC--------CcccCCCcCC
Confidence 4588887776542 23345777887763 4777777664
No 194
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=22.38 E-value=6.3 Score=25.74 Aligned_cols=11 Identities=9% Similarity=0.078 Sum_probs=5.2
Q ss_pred CcccccccccC
Q 028139 197 TCPVCNQEMIF 207 (213)
Q Consensus 197 ~CPvCr~~l~~ 207 (213)
.|+.|+..+..
T Consensus 28 iC~~cg~~YPI 38 (68)
T 2hf1_A 28 ICKGDRLAFPI 38 (68)
T ss_dssp EETTTTEEEEE
T ss_pred EcCCCCcEecC
Confidence 35555544443
No 195
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=22.17 E-value=1.2e+02 Score=21.05 Aligned_cols=46 Identities=13% Similarity=0.227 Sum_probs=28.9
Q ss_pred CCccccccccccCCCCeEEcCcCCeechhHHHHHHhcCCCcccccccccC
Q 028139 158 EDVCPTCLEEYDAENPRIITKCEHHFHLACIFEWMERSDTCPVCNQEMIF 207 (213)
Q Consensus 158 ~~~C~ICle~~~~~~~~~~l~CgH~Fh~~CI~~Wl~~~~~CPvCr~~l~~ 207 (213)
=..|..|...+... .....=|..||..|..+- ....|..|.+.|..
T Consensus 30 CF~C~~C~~~L~~~--~f~~~~g~~yC~~cy~~~--~~~~C~~C~~~I~~ 75 (126)
T 2xqn_T 30 HFCCFDCDSILAGE--IYVMVNDKPVCKPCYVKN--HAVVCQGCHNAIDP 75 (126)
T ss_dssp GSBCTTTCCBCTTS--EEEEETTEEEEHHHHHHH--SCCBCTTTCSBCCT
T ss_pred CCCcCCCCCCCCcC--EEEeECCEEechHHhCcC--cCccCcccCCcCCc
Confidence 35677777766432 233445677787777553 34568888877764
No 196
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.91 E-value=1e+02 Score=20.11 Aligned_cols=27 Identities=19% Similarity=0.572 Sum_probs=13.7
Q ss_pred CccccccccccCCCCeEEcCcCCeechhH
Q 028139 159 DVCPTCLEEYDAENPRIITKCEHHFHLAC 187 (213)
Q Consensus 159 ~~C~ICle~~~~~~~~~~l~CgH~Fh~~C 187 (213)
..|..|-+.+...+. +..-+..||..|
T Consensus 16 ~~C~~C~~~I~~~~~--v~a~~~~~H~~C 42 (91)
T 2d8y_A 16 ETCVECQKTVYPMER--LLANQQVFHISC 42 (91)
T ss_dssp CBCTTTCCBCCTTSE--EECSSSEEETTT
T ss_pred CcCccCCCccCCcee--EEECCCEECCCC
Confidence 456666666543221 233455666555
No 197
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=21.75 E-value=56 Score=23.19 Aligned_cols=40 Identities=15% Similarity=0.407 Sum_probs=28.4
Q ss_pred CCCccccccccccCCCCeEEcCcCCeechhHHHHHHhcCCCccccccccc
Q 028139 157 EEDVCPTCLEEYDAENPRIITKCEHHFHLACIFEWMERSDTCPVCNQEMI 206 (213)
Q Consensus 157 e~~~C~ICle~~~~~~~~~~l~CgH~Fh~~CI~~Wl~~~~~CPvCr~~l~ 206 (213)
....|.-|-..+.... ++..-+..||..| -+|-.|++.|.
T Consensus 60 ~~~~C~~C~~~I~~~~--~v~a~~~~wH~~C--------F~C~~C~~~L~ 99 (123)
T 2l4z_A 60 SWKRCAGCGGKIADRF--LLYAMDSYWHSRC--------LKCSSCQAQLG 99 (123)
T ss_dssp SCSBBSSSSSBCCSSS--EEEETTEEEETTT--------SBCTTTCCBGG
T ss_pred cCCcCcCCCCCcCCcE--EEEeCCcEEcccc--------cCcCcCCCccc
Confidence 3467999998876432 2334688899888 45888988775
No 198
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=21.53 E-value=92 Score=19.48 Aligned_cols=40 Identities=15% Similarity=0.425 Sum_probs=27.3
Q ss_pred CccccccccccC---CCCeEEcCcCCeechhHHHHHHhcCCCcccccccccC
Q 028139 159 DVCPTCLEEYDA---ENPRIITKCEHHFHLACIFEWMERSDTCPVCNQEMIF 207 (213)
Q Consensus 159 ~~C~ICle~~~~---~~~~~~l~CgH~Fh~~CI~~Wl~~~~~CPvCr~~l~~ 207 (213)
..|+.|-..+.. .. ..+..=+..||..| -+|-.|++.|..
T Consensus 16 ~~C~~C~~~I~~~g~~~-~~~~a~~~~~H~~C--------F~C~~C~~~L~~ 58 (77)
T 2egq_A 16 KKCAGCKNPITGFGKGS-SVVAYEGQSWHDYC--------FHCKKCSVNLAN 58 (77)
T ss_dssp CCCSSSCCCCCCCSSCC-CEEEETTEEEETTT--------CBCSSSCCBCTT
T ss_pred ccCcccCCcccCCCCCc-eeEEECcceeCccc--------CEehhcCCCCCC
Confidence 569999888763 22 22333578899887 358889887753
No 199
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=20.95 E-value=6.6 Score=25.77 Aligned_cols=12 Identities=8% Similarity=0.141 Sum_probs=5.9
Q ss_pred CcccccccccCC
Q 028139 197 TCPVCNQEMIFD 208 (213)
Q Consensus 197 ~CPvCr~~l~~~ 208 (213)
.|+.|+..+...
T Consensus 28 iC~~cg~~YPI~ 39 (70)
T 2js4_A 28 VCNADRLAFPVR 39 (70)
T ss_dssp EETTTTEEEEEE
T ss_pred EcCCCCceecCC
Confidence 455555544433
Done!