BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028140
(213 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2B5F|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In An
Open Conformation To 3.9 Resolution
pdb|2B5F|B Chain B, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In An
Open Conformation To 3.9 Resolution
pdb|2B5F|C Chain C, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In An
Open Conformation To 3.9 Resolution
pdb|2B5F|D Chain D, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In An
Open Conformation To 3.9 Resolution
Length = 303
Score = 284 bits (727), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 141/189 (74%), Positives = 153/189 (80%), Gaps = 1/189 (0%)
Query: 24 AAQTQDGKDYVEPPPAPLFEPGELKSWSFYRAGIAEFIATFLFLYISVLTVMGVVKSNTK 83
A Q GKDYV+PPPAP F+ GELK WSF+RA IAEFIAT LFLYI+V TV+G K
Sbjct: 9 AQAHQHGKDYVDPPPAPFFDLGELKLWSFWRAAIAEFIATLLFLYITVATVIGHSKETVV 68
Query: 84 CSTVGIQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCL 143
C +VG+ GIAWAFGGMIFVLVYCTAGISGGHINPAVT GLFLARK+SL RAL YM+ QCL
Sbjct: 69 CGSVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLLRALVYMIAQCL 128
Query: 144 GAICGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKR 203
GAICG G+VK FM G Y + GGAN VA GY KG LGAEIIGTFVLVYTVFSATD KR
Sbjct: 129 GAICGVGLVKAFM-KGPYNQFGGGANSVALGYNKGTALGAEIIGTFVLVYTVFSATDPKR 187
Query: 204 SARDSHVPV 212
SARDSHVP+
Sbjct: 188 SARDSHVPI 196
>pdb|3CN6|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S274e
Mutant
pdb|3CN6|B Chain B, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S274e
Mutant
Length = 304
Score = 283 bits (724), Expect = 5e-77, Method: Compositional matrix adjust.
Identities = 141/189 (74%), Positives = 153/189 (80%), Gaps = 1/189 (0%)
Query: 24 AAQTQDGKDYVEPPPAPLFEPGELKSWSFYRAGIAEFIATFLFLYISVLTVMGVVKSNTK 83
A Q GKDYV+PPPAP F+ GELK WSF+RA IAEFIAT LFLYI+V TV+G K
Sbjct: 32 AQAHQHGKDYVDPPPAPFFDLGELKLWSFWRAAIAEFIATLLFLYITVATVIGHSKETVV 91
Query: 84 CSTVGIQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCL 143
C +VG+ GIAWAFGGMIFVLVYCTAGISGGHINPAVT GLFLARK+SL RAL YM+ QCL
Sbjct: 92 CGSVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLLRALVYMIAQCL 151
Query: 144 GAICGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKR 203
GAICG G+VK FM G Y + GGAN VA GY KG LGAEIIGTFVLVYTVFSATD KR
Sbjct: 152 GAICGVGLVKAFM-KGPYNQFGGGANSVALGYNKGTALGAEIIGTFVLVYTVFSATDPKR 210
Query: 204 SARDSHVPV 212
SARDSHVP+
Sbjct: 211 SARDSHVPI 219
>pdb|1Z98|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In A
Closed Conformation
pdb|1Z98|M Chain M, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In A
Closed Conformation
Length = 281
Score = 283 bits (724), Expect = 5e-77, Method: Compositional matrix adjust.
Identities = 141/189 (74%), Positives = 153/189 (80%), Gaps = 1/189 (0%)
Query: 24 AAQTQDGKDYVEPPPAPLFEPGELKSWSFYRAGIAEFIATFLFLYISVLTVMGVVKSNTK 83
A Q GKDYV+PPPAP F+ GELK WSF+RA IAEFIAT LFLYI+V TV+G K
Sbjct: 9 AQAHQHGKDYVDPPPAPFFDLGELKLWSFWRAAIAEFIATLLFLYITVATVIGHSKETVV 68
Query: 84 CSTVGIQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCL 143
C +VG+ GIAWAFGGMIFVLVYCTAGISGGHINPAVT GLFLARK+SL RAL YM+ QCL
Sbjct: 69 CGSVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLLRALVYMIAQCL 128
Query: 144 GAICGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKR 203
GAICG G+VK FM G Y + GGAN VA GY KG LGAEIIGTFVLVYTVFSATD KR
Sbjct: 129 GAICGVGLVKAFM-KGPYNQFGGGANSVALGYNKGTALGAEIIGTFVLVYTVFSATDPKR 187
Query: 204 SARDSHVPV 212
SARDSHVP+
Sbjct: 188 SARDSHVPI 196
>pdb|3CN5|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S115e,
S274e Mutant
Length = 304
Score = 281 bits (720), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 140/189 (74%), Positives = 152/189 (80%), Gaps = 1/189 (0%)
Query: 24 AAQTQDGKDYVEPPPAPLFEPGELKSWSFYRAGIAEFIATFLFLYISVLTVMGVVKSNTK 83
A Q GKDYV+PPPAP F+ GELK WSF+RA IAEFIAT LFLYI+V TV+G K
Sbjct: 32 AQAHQHGKDYVDPPPAPFFDLGELKLWSFWRAAIAEFIATLLFLYITVATVIGHSKETVV 91
Query: 84 CSTVGIQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCL 143
C +VG+ GIAWAFGGMIFVLVYCTAGISGGHINPAVT GLFLARK+ L RAL YM+ QCL
Sbjct: 92 CGSVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVELLRALVYMIAQCL 151
Query: 144 GAICGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKR 203
GAICG G+VK FM G Y + GGAN VA GY KG LGAEIIGTFVLVYTVFSATD KR
Sbjct: 152 GAICGVGLVKAFM-KGPYNQFGGGANSVALGYNKGTALGAEIIGTFVLVYTVFSATDPKR 210
Query: 204 SARDSHVPV 212
SARDSHVP+
Sbjct: 211 SARDSHVPI 219
>pdb|3CLL|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S115e
Mutant
Length = 300
Score = 281 bits (720), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 140/189 (74%), Positives = 152/189 (80%), Gaps = 1/189 (0%)
Query: 24 AAQTQDGKDYVEPPPAPLFEPGELKSWSFYRAGIAEFIATFLFLYISVLTVMGVVKSNTK 83
A Q GKDYV+PPPAP F+ GELK WSF+RA IAEFIAT LFLYI+V TV+G K
Sbjct: 28 AQAHQHGKDYVDPPPAPFFDLGELKLWSFWRAAIAEFIATLLFLYITVATVIGHSKETVV 87
Query: 84 CSTVGIQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCL 143
C +VG+ GIAWAFGGMIFVLVYCTAGISGGHINPAVT GLFLARK+ L RAL YM+ QCL
Sbjct: 88 CGSVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVELLRALVYMIAQCL 147
Query: 144 GAICGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKR 203
GAICG G+VK FM G Y + GGAN VA GY KG LGAEIIGTFVLVYTVFSATD KR
Sbjct: 148 GAICGVGLVKAFM-KGPYNQFGGGANSVALGYNKGTALGAEIIGTFVLVYTVFSATDPKR 206
Query: 204 SARDSHVPV 212
SARDSHVP+
Sbjct: 207 SARDSHVPI 215
>pdb|1J4N|A Chain A, Crystal Structure Of The Aqp1 Water Channel
Length = 271
Score = 110 bits (275), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 68/166 (40%), Positives = 94/166 (56%), Gaps = 8/166 (4%)
Query: 46 ELKSWSFYRAGIAEFIATFLFLYISVLTVMGV---VKSNTKCSTVGIQ-GIAWAFGGMIF 101
E K F+RA +AEF+A LF++IS+ + +G +KSN V ++ AFG I
Sbjct: 4 EFKKKLFWRAVVAEFLAMILFIFISIGSALGFHYPIKSNQTTGAVQDNVKVSLAFGLSIA 63
Query: 102 VLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQY 161
L ISG H+NPAVTLGL L+ ++S+ RA+ Y++ QC+GAI ++ G +
Sbjct: 64 TLAQSVGHISGAHLNPAVTLGLLLSCQISVLRAIMYIIAQCVGAIVATAILSGITSSLPD 123
Query: 162 GRLAGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRSARD 207
L G N +A G G GLG EIIGT LV V + TD +R RD
Sbjct: 124 NSL--GLNALAPGVNSGQGLGIEIIGTLQLVLCVLATTDRRR--RD 165
>pdb|1FQY|A Chain A, Structure Of Aquaporin-1 At 3.8 A Resolution By Electron
Crystallography
pdb|1IH5|A Chain A, Crystal Structure Of Aquaporin-1
pdb|1H6I|A Chain A, A Refined Structure Of Human Aquaporin 1
Length = 269
Score = 108 bits (270), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 67/171 (39%), Positives = 96/171 (56%), Gaps = 6/171 (3%)
Query: 46 ELKSWSFYRAGIAEFIATFLFLYISVLTVMGV---VKSNTKCSTVGIQGIAWAFGGMIFV 102
E K F+RA +AEF+AT LF++IS+ + +G V +N ++ ++ AFG I
Sbjct: 4 EFKKKLFWRAVVAEFLATTLFVFISIGSALGFKYPVGNNQTAVQDNVK-VSLAFGLSIAT 62
Query: 103 LVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYG 162
L ISG H+NPAVTLGL L+ ++S+ RAL Y++ QC+GAI ++ G +
Sbjct: 63 LAQSVGHISGAHLNPAVTLGLLLSCQISIFRALMYIIAQCVGAIVATAILSGITSSLTGN 122
Query: 163 RLAGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPVS 213
L G N +A G G GLG EIIGT LV V + TD +R P++
Sbjct: 123 SL--GRNDLADGVNSGQGLGIEIIGTLQLVLCVLATTDRRRRDLGGSAPLA 171
>pdb|2D57|A Chain A, Double Layered 2d Crystal Structure Of Aquaporin-4
(Aqp4m23) At 3.2 A Resolution By Electron
Crystallography
Length = 301
Score = 100 bits (248), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 61/154 (39%), Positives = 90/154 (58%), Gaps = 3/154 (1%)
Query: 51 SFYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAWAFGGMIFVLVYCTAGI 110
+F++A AEF+A +F+ +SV + + S V + I+ FG I +V C I
Sbjct: 11 AFWKAVTAEFLAMLIFVLLSVGSTINWGGSENPLP-VDMVLISLCFGLSIATMVQCFGHI 69
Query: 111 SGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANV 170
SGGHINPAVT+ + RK+S+ +++FY+ QCLGAI GAG++ G L G
Sbjct: 70 SGGHINPAVTVAMVCTRKISIAKSVFYITAQCLGAIIGAGILYLVTPPSVVGGL--GVTT 127
Query: 171 VAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRS 204
V T G GL E+I TF LV+T+F++ D+KR+
Sbjct: 128 VHGNLTAGHGLLVELIITFQLVFTIFASCDSKRT 161
>pdb|3IYZ|A Chain A, Structure Of Aquaporin-4 S180d Mutant At 10.0 A Resolution
From Electron Micrograph
Length = 340
Score = 99.0 bits (245), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 61/154 (39%), Positives = 89/154 (57%), Gaps = 3/154 (1%)
Query: 51 SFYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAWAFGGMIFVLVYCTAGI 110
+F++A AEF+A +F+ +SV + + S V + I+ FG I +V C I
Sbjct: 50 AFWKAVTAEFLAMLIFVLLSVGSTINWGGSENPLP-VDMVLISLCFGLSIATMVQCFGHI 108
Query: 111 SGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANV 170
SGGHINPAVT+ + RK+S+ +++FY+ QCLGAI GAG++ G L G
Sbjct: 109 SGGHINPAVTVAMVCTRKISIAKSVFYITAQCLGAIIGAGILYLVTPPSVVGGL--GVTT 166
Query: 171 VAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRS 204
V T G GL E+I TF LV+T+F++ D KR+
Sbjct: 167 VHGNLTAGHGLLVELIITFQLVFTIFASCDDKRT 200
>pdb|2ZZ9|A Chain A, Structure Of Aquaporin-4 S180d Mutant At 2.8 A Resolution
By Electron Crystallography
Length = 301
Score = 99.0 bits (245), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 61/154 (39%), Positives = 89/154 (57%), Gaps = 3/154 (1%)
Query: 51 SFYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAWAFGGMIFVLVYCTAGI 110
+F++A AEF+A +F+ +SV + + S V + I+ FG I +V C I
Sbjct: 11 AFWKAVTAEFLAMLIFVLLSVGSTINWGGSENPLP-VDMVLISLCFGLSIATMVQCFGHI 69
Query: 111 SGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANV 170
SGGHINPAVT+ + RK+S+ +++FY+ QCLGAI GAG++ G L G
Sbjct: 70 SGGHINPAVTVAMVCTRKISIAKSVFYITAQCLGAIIGAGILYLVTPPSVVGGL--GVTT 127
Query: 171 VAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRS 204
V T G GL E+I TF LV+T+F++ D KR+
Sbjct: 128 VHGNLTAGHGLLVELIITFQLVFTIFASCDDKRT 161
>pdb|3GD8|A Chain A, Crystal Structure Of Human Aquaporin 4 At 1.8 And Its
Mechanism Of Conductance
Length = 223
Score = 96.3 bits (238), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 60/154 (38%), Positives = 91/154 (59%), Gaps = 3/154 (1%)
Query: 51 SFYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAWAFGGMIFVLVYCTAGI 110
+F++A AEF+A +F+ +S+ + + K V + I+ FG I +V C I
Sbjct: 2 AFWKAVTAEFLAMLIFVLLSLGSTINW-GGTEKPLPVDMVLISLCFGLSIATMVQCFGHI 60
Query: 111 SGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANV 170
SGGHINPAVT+ + RK+S+ +++FY+ QCLGAI GAG++ G L G +
Sbjct: 61 SGGHINPAVTVAMVCTRKISIAKSVFYIAAQCLGAIIGAGILYLVTPPSVVGGL--GVTM 118
Query: 171 VAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRS 204
V T G GL E+I TF LV+T+F++ D+KR+
Sbjct: 119 VHGNLTAGHGLLVELIITFQLVFTIFASCDSKRT 152
>pdb|3D9S|A Chain A, Human Aquaporin 5 (Aqp5) - High Resolution X-Ray Structure
pdb|3D9S|B Chain B, Human Aquaporin 5 (Aqp5) - High Resolution X-Ray Structure
pdb|3D9S|C Chain C, Human Aquaporin 5 (Aqp5) - High Resolution X-Ray Structure
pdb|3D9S|D Chain D, Human Aquaporin 5 (Aqp5) - High Resolution X-Ray Structure
Length = 266
Score = 86.7 bits (213), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 59/160 (36%), Positives = 91/160 (56%), Gaps = 7/160 (4%)
Query: 46 ELKSWSFYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAWAFGGMIFVLVY 105
E+ S +F +A AEF+AT +F++ + + + K + T I IA AFG I L
Sbjct: 5 EVCSVAFLKAVFAEFLATLIFVFFGLGSAL---KWPSALPT--ILQIALAFGLAIGTLAQ 59
Query: 106 CTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLA 165
+SGGHINPA+TL L + ++SL RA FY+ Q +GAI GAG++ G A R
Sbjct: 60 ALGPVSGGHINPAITLALLVGNQISLLRAFFYVAAQLVGAIAGAGILYGV--APLNARGN 117
Query: 166 GGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRSA 205
N + + T+G + E+I TF L +F++TD++R++
Sbjct: 118 LAVNALNNNTTQGQAMVVELILTFQLALCIFASTDSRRTS 157
>pdb|1YMG|A Chain A, The Channel Architecture Of Aquaporin O At 2.2 Angstrom
Resolution
pdb|2B6P|A Chain A, X-Ray Structure Of Lens Aquaporin-0 (Aqp0) (Lens Mip) In
An Open Pore State
pdb|2C32|A Chain A, Co-Axial Association Of Recombinant Eye Lens Aquaporin-0
Observed In Loosely Packed 3d-Crystals
Length = 263
Score = 80.5 bits (197), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 54/161 (33%), Positives = 79/161 (49%), Gaps = 7/161 (4%)
Query: 46 ELKSWSFYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAWAFGGMIFVLVY 105
EL+S SF+RA AEF A+ +++ + + + + +A AFG + LV
Sbjct: 3 ELRSASFWRAICAEFFASLFYVFFGLGASL-----RWAPGPLHVLQVALAFGLALATLVQ 57
Query: 106 CTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLA 165
ISG H+NPAVT + ++SL RA+ YMV Q LGA+ GA V+ G LA
Sbjct: 58 AVGHISGAHVNPAVTFAFLVGSQMSLLRAICYMVAQLLGAVAGAAVLYSVTPPAVRGNLA 117
Query: 166 GGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRSAR 206
N + G + G EI T V +F+ D +R+ R
Sbjct: 118 --LNTLHPGVSVGQATIVEIFLTLQFVLCIFATYDERRNGR 156
>pdb|2B6O|A Chain A, Electron Crystallographic Structure Of Lens Aquaporin-0
(Aqp0) (Lens Mip) At 1.9a Resolution, In A Closed Pore
State
Length = 263
Score = 80.1 bits (196), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 54/161 (33%), Positives = 79/161 (49%), Gaps = 7/161 (4%)
Query: 46 ELKSWSFYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAWAFGGMIFVLVY 105
EL+S SF+RA AEF AT +++ + + + + +A AFG + LV
Sbjct: 3 ELRSASFWRAIFAEFFATLFYVFFGLGASL-----RWAPGPLHVLQVALAFGLALATLVQ 57
Query: 106 CTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLA 165
ISG H+NPAVT + ++SL RA+ Y+V Q LGA+ GA V+ G LA
Sbjct: 58 AVGHISGAHVNPAVTFAFLVGSQMSLLRAICYVVAQLLGAVAGAAVLYSVTPPAVRGNLA 117
Query: 166 GGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRSAR 206
N + G + G EI T V +F+ D +R+ R
Sbjct: 118 --LNTLHPGVSVGQATIVEIFLTLQFVLCIFATYDERRNGR 156
>pdb|1SOR|A Chain A, Aquaporin-0 Membrane Junctions Reveal The Structure Of A
Closed Water Pore
Length = 235
Score = 74.3 bits (181), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 52/159 (32%), Positives = 77/159 (48%), Gaps = 7/159 (4%)
Query: 48 KSWSFYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAWAFGGMIFVLVYCT 107
+S SF+RA AEF AT +++ + + + + +A AFG + LV
Sbjct: 1 RSASFWRAIFAEFFATLFYVFFGLGASL-----RWAPGPLHVLQVALAFGLALATLVQAV 55
Query: 108 AGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGG 167
ISG H+NPAVT + ++SL RA+ Y+V Q LGA+ GA V+ G LA
Sbjct: 56 GHISGAHVNPAVTFAFLVGSQMSLLRAICYVVAQLLGAVAGAAVLYSVTPPAVRGNLA-- 113
Query: 168 ANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRSAR 206
N + G + G EI T V +F+ D +R+ R
Sbjct: 114 LNTLHPGVSVGQATIVEIFLTLQFVLCIFATYDERRNGR 152
>pdb|3M9I|A Chain A, Electron Crystallographic Structure Of Lens Aquaporin-0
(Aqp Mip) In E. Coli Polar Lipids
Length = 220
Score = 72.8 bits (177), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 51/156 (32%), Positives = 75/156 (48%), Gaps = 7/156 (4%)
Query: 51 SFYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAWAFGGMIFVLVYCTAGI 110
SF+RA AEF AT +++ + + + + +A AFG + LV I
Sbjct: 2 SFWRAIFAEFFATLFYVFFGLGASL-----RWAPGPLHVLQVALAFGLALATLVQAVGHI 56
Query: 111 SGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANV 170
SG H+NPAVT + ++SL RA+ Y+V Q LGA+ GA V+ G LA N
Sbjct: 57 SGAHVNPAVTFAFLVGSQMSLLRAICYVVAQLLGAVAGAAVLYSVTPPAVRGNLA--LNT 114
Query: 171 VAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRSAR 206
+ G + G EI T V +F+ D +R+ R
Sbjct: 115 LHPGVSVGQATIVEIFLTLQFVLCIFATYDERRNGR 150
>pdb|2EVU|A Chain A, Crystal Structure Of Aquaporin Aqpm At 2.3a Resolution
pdb|2F2B|A Chain A, Crystal Structure Of Integral Membrane Protein Aquaporin
Aqpm At 1.68a Resolution
Length = 246
Score = 54.3 bits (129), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 48/170 (28%), Positives = 75/170 (44%), Gaps = 14/170 (8%)
Query: 51 SFYRAGIAEFIATFLFLY-------ISVLTVMGVVKSN-------TKCSTVGIQGIAWAF 96
S + IAEFI TF+ ++ ++++ G N I AF
Sbjct: 3 SLTKRCIAEFIGTFILVFFGAGSAAVTLMIASGGTSPNPFNIGIGLLGGLGDWVAIGLAF 62
Query: 97 GGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFM 156
G I +Y ISG HINPAVT+GL+ +K + Y++ Q LGA G+ +
Sbjct: 63 GFAIAASIYALGNISGCHINPAVTIGLWSVKKFPGREVVPYIIAQLLGAAFGSFIFLQCA 122
Query: 157 GAGQYGRLAGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRSAR 206
G G GA G + + AE++GTF+L+ T+ +R+ +
Sbjct: 123 GIGAATVGGLGATAPFPGISYWQAMLAEVVGTFLLMITIMGIAVDERAPK 172
Score = 30.0 bits (66), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 48/101 (47%), Gaps = 11/101 (10%)
Query: 51 SFYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAWAFGGMIFVLVYCTAG- 109
S+++A +AE + TFL + +T+MG+ +G A G+ + T G
Sbjct: 142 SYWQAMLAEVVGTFLLM----ITIMGIAVDERAP-----KGFAGIIIGLTVAGIITTLGN 192
Query: 110 ISGGHINPAVTLGLFLARKLSLTRALF-YMVMQCLGAICGA 149
ISG +NPA T G +L + L+ Y + +G I GA
Sbjct: 193 ISGSSLNPARTFGPYLNDMIFAGTDLWNYYSIYVIGPIVGA 233
>pdb|1LDF|A Chain A, Crystal Structure Of The E. Coli Glycerol Facilitator
(Glpf) Mutation W48f, F200t
Length = 281
Score = 51.6 bits (122), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 53/99 (53%), Gaps = 3/99 (3%)
Query: 57 IAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAWAFGGMIFVLVYCTAGISGGHIN 116
IAEF+ T L ++ V V + ++ G I+ FG + + +Y TAG+SG H+N
Sbjct: 12 IAEFLGTGLLIFFGVGCVAAL---KVAGASFGQWEISVIFGLGVAMAIYLTAGVSGAHLN 68
Query: 117 PAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGF 155
PAVT+ L+L + + ++V Q GA C A +V G
Sbjct: 69 PAVTIALWLFACFDKRKVIPFIVSQVAGAFCAAALVYGL 107
>pdb|2W1P|A Chain A, 1.4 Angstrom Crystal Structure Of P.Pastoris Aquaporin,
Aqy1, In A Closed Conformation At Ph 8.0
pdb|2W2E|A Chain A, 1.15 Angstrom Crystal Structure Of P.Pastoris Aquaporin,
Aqy1, In A Closed Conformation At Ph 3.5
Length = 279
Score = 51.6 bits (122), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 58/197 (29%), Positives = 84/197 (42%), Gaps = 24/197 (12%)
Query: 26 QTQDGKDYVEPPPAPL----FEPGELKSWSF--------YRAGIAEFIATFLFLYISVLT 73
Q DG+ ++P AP ++P + W F + A EF+ TFLFL+ S
Sbjct: 7 QAADGQAEIKPEDAPYITNAYKPAYAR-WGFGSDSVRNHFIAMSGEFVGTFLFLW-SAFV 64
Query: 74 VMGVVKSNTKCSTVGIQG-----IAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARK 128
+ + + G I++ FG + V V+ T +SGG++NPAVTL L LAR
Sbjct: 65 IAQIANQAPETPDGGSNPAQLIMISFGFGFGVMVGVFITYRVSGGNLNPAVTLALVLARA 124
Query: 129 LSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDGLGAEIIGT 188
+ R + Q I G A G +A AN + G ++ GL E GT
Sbjct: 125 IPPFRGILMAFTQ----IVAGMAAAGAASAMTPGEIA-FANALGGGASRTRGLFLEAFGT 179
Query: 189 FVLVYTVFSATDAKRSA 205
+L TV K A
Sbjct: 180 AILCLTVLMLAVEKHRA 196
>pdb|1FX8|A Chain A, Crystal Structure Of The E. Coli Glycerol Facilitator
(Glpf) With Substrate Glycerol
pdb|1LDA|A Chain A, Crystal Structure Of The E. Coli Glycerol Facilitator
(glpf) Without Substrate Glycerol
pdb|1LDI|A Chain A, Crystal Structure Of The E. Coli Glycerol Facilitator
(Glpf) Without Substrate Glycerol
Length = 281
Score = 51.2 bits (121), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 53/104 (50%), Gaps = 13/104 (12%)
Query: 57 IAEFIATFLFLY-----ISVLTVMGVVKSNTKCSTVGIQGIAWAFGGMIFVLVYCTAGIS 111
IAEF+ T L ++ ++ L V G + S + G+A A +Y TAG+S
Sbjct: 12 IAEFLGTGLLIFFGVGCVAALKVAGASFGQWEISVIWGLGVAMA--------IYLTAGVS 63
Query: 112 GGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGF 155
G H+NPAVT+ L+L + + ++V Q GA C A +V G
Sbjct: 64 GAHLNPAVTIALWLFACFDKRKVIPFIVSQVAGAFCAAALVYGL 107
>pdb|2O9F|A Chain A, Crystal Structure Of Aqpz Mutant L170c
pdb|2O9F|B Chain B, Crystal Structure Of Aqpz Mutant L170c
pdb|2O9G|A Chain A, Crystal Structure Of Aqpz Mutant L170c Complexed With
Mercury
Length = 234
Score = 50.1 bits (118), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 48/89 (53%), Gaps = 1/89 (1%)
Query: 87 VGIQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAI 146
+G G+A AFG + + + ISGGH NPAVT+GL+ + + Y++ Q +G I
Sbjct: 37 IGFAGVALAFGLTVLTMAFAVGHISGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGI 96
Query: 147 CGAGVVKGFMGAGQYGRLAGGANVVAHGY 175
A ++ + +G+ G A + ++GY
Sbjct: 97 VAAALLY-LIASGKTGFDAAASGFASNGY 124
>pdb|2O9E|A Chain A, Crystal Structure Of Aqpz Mutant T183c Complexed With
Mercury
Length = 234
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 48/89 (53%), Gaps = 1/89 (1%)
Query: 87 VGIQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAI 146
+G G+A AFG + + + ISGGH NPAVT+GL+ + + Y++ Q +G I
Sbjct: 37 IGFAGVALAFGLTVLTMAFAVGHISGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGI 96
Query: 147 CGAGVVKGFMGAGQYGRLAGGANVVAHGY 175
A ++ + +G+ G A + ++GY
Sbjct: 97 VAAALLY-LIASGKTGFDAAASGFASNGY 124
>pdb|2O9D|A Chain A, Crystal Structure Of Aqpz Mutant T183c.
pdb|2O9D|B Chain B, Crystal Structure Of Aqpz Mutant T183c
Length = 234
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 48/89 (53%), Gaps = 1/89 (1%)
Query: 87 VGIQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAI 146
+G G+A AFG + + + ISGGH NPAVT+GL+ + + Y++ Q +G I
Sbjct: 37 IGFAGVALAFGLTVLTMAFAVGHISGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGI 96
Query: 147 CGAGVVKGFMGAGQYGRLAGGANVVAHGY 175
A ++ + +G+ G A + ++GY
Sbjct: 97 VAAALLY-LIASGKTGFDAAASGFASNGY 124
>pdb|3NKA|A Chain A, Crystal Structure Of Aqpz H174g,T183f
pdb|3NKA|B Chain B, Crystal Structure Of Aqpz H174g,T183f
Length = 234
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 48/89 (53%), Gaps = 1/89 (1%)
Query: 87 VGIQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAI 146
+G G+A AFG + + + ISGGH NPAVT+GL+ + + Y++ Q +G I
Sbjct: 37 IGFAGVALAFGLTVLTMAFAVGHISGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGI 96
Query: 147 CGAGVVKGFMGAGQYGRLAGGANVVAHGY 175
A ++ + +G+ G A + ++GY
Sbjct: 97 VAAALLY-LIASGKTGFDAAASGFASNGY 124
>pdb|1RC2|B Chain B, 2.5 Angstrom Resolution X-Ray Structure Of Aquaporin Z
pdb|1RC2|A Chain A, 2.5 Angstrom Resolution X-Ray Structure Of Aquaporin Z
pdb|2ABM|A Chain A, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|B Chain B, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|C Chain C, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|D Chain D, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|E Chain E, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|F Chain F, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|G Chain G, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|H Chain H, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
Length = 231
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 48/89 (53%), Gaps = 1/89 (1%)
Query: 87 VGIQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAI 146
+G G+A AFG + + + ISGGH NPAVT+GL+ + + Y++ Q +G I
Sbjct: 34 IGFAGVALAFGLTVLTMAFAVGHISGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGI 93
Query: 147 CGAGVVKGFMGAGQYGRLAGGANVVAHGY 175
A ++ + +G+ G A + ++GY
Sbjct: 94 VAAALLY-LIASGKTGFDAAASGFASNGY 121
>pdb|3NKC|A Chain A, Crystal Structure Of Aqpz F43w,H174g,T183f
pdb|3NKC|B Chain B, Crystal Structure Of Aqpz F43w,H174g,T183f
Length = 234
Score = 47.8 bits (112), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 48/89 (53%), Gaps = 1/89 (1%)
Query: 87 VGIQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAI 146
+G G+A A+G + + + ISGGH NPAVT+GL+ + + Y++ Q +G I
Sbjct: 37 IGFAGVALAWGLTVLTMAFAVGHISGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGI 96
Query: 147 CGAGVVKGFMGAGQYGRLAGGANVVAHGY 175
A ++ + +G+ G A + ++GY
Sbjct: 97 VAAALLY-LIASGKTGFDAAASGFASNGY 124
>pdb|3NK5|A Chain A, Crystal Structure Of Aqpz Mutant F43w
pdb|3NK5|B Chain B, Crystal Structure Of Aqpz Mutant F43w
Length = 234
Score = 47.8 bits (112), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 48/89 (53%), Gaps = 1/89 (1%)
Query: 87 VGIQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAI 146
+G G+A A+G + + + ISGGH NPAVT+GL+ + + Y++ Q +G I
Sbjct: 37 IGFAGVALAWGLTVLTMAFAVGHISGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGI 96
Query: 147 CGAGVVKGFMGAGQYGRLAGGANVVAHGY 175
A ++ + +G+ G A + ++GY
Sbjct: 97 VAAALLY-LIASGKTGFDAAASGFASNGY 124
>pdb|3LLQ|A Chain A, Aquaporin Structure From Plant Pathogen Agrobacterium
Tumerfaciens
pdb|3LLQ|B Chain B, Aquaporin Structure From Plant Pathogen Agrobacterium
Tumerfaciens
Length = 256
Score = 44.3 bits (103), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 48/93 (51%), Gaps = 2/93 (2%)
Query: 47 LKSWSFYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAWAFGGMIFVLVYC 106
+S+ R +AEF TF ++ + V + +G G+A AFG + + Y
Sbjct: 24 FQSYVMGRKLLAEFFGTFWLVFGGCGSA--VFAAAFPELGIGFTGVALAFGLTVLTMAYA 81
Query: 107 TAGISGGHINPAVTLGLFLARKLSLTRALFYMV 139
GISGGH NPAV++GL +A + + + Y++
Sbjct: 82 VGGISGGHFNPAVSVGLTVAGRFPASSLVPYVI 114
>pdb|3C02|A Chain A, X-Ray Structure Of The Aquaglyceroporin From Plasmodium
Falciparum
Length = 258
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 50/107 (46%), Gaps = 7/107 (6%)
Query: 52 FYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQG----IAWAFGGMIFVLVYCT 107
FY++ + EFI FL ++ + G + T G+ G + +G +F + +
Sbjct: 5 FYKSYVREFIGEFLGTFVLMFLGEG---ATANFHTTGLSGDWYKLCLGWGLAVFFGILVS 61
Query: 108 AGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKG 154
A +SG H+N AV++GL K L + Y Q LGA G V G
Sbjct: 62 AKLSGAHLNLAVSIGLSSINKFDLKKIPVYFFAQLLGAFVGTSTVYG 108
>pdb|3NE2|A Chain A, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|B Chain B, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|C Chain C, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|D Chain D, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|E Chain E, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|F Chain F, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|G Chain G, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|H Chain H, Archaeoglobus Fulgidus Aquaporin
Length = 246
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 54/115 (46%), Gaps = 4/115 (3%)
Query: 92 IAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGV 151
I AF I ++Y ISG HINPAVT+ L+ + + Y+V Q +GA G+ +
Sbjct: 59 IGMAFALAIAAVIYSLGRISGAHINPAVTIALWSIGRFPGREVVPYIVAQFIGAALGSLL 118
Query: 152 VKGFMG--AGQYGRLAGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRS 204
+G A G L A GY G + E IGTF+L+ + +R+
Sbjct: 119 FLACVGPAAATVGGLGATAPFPGIGY--GQAILTEAIGTFLLMLVIMGVAVDERA 171
Score = 27.7 bits (60), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 39/96 (40%), Gaps = 8/96 (8%)
Query: 54 RAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAWAFGGMIFVLVYCTAGISGG 113
+A + E I TFL + L +MGV I GG+I + I+G
Sbjct: 146 QAILTEAIGTFLLM----LVIMGVAVDERAPPGFAGLVIGLTVGGIITTI----GNITGS 197
Query: 114 HINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGA 149
+NPA T G +L L Y + +G I GA
Sbjct: 198 SLNPARTFGPYLGDSLMGINLWQYFPIYVIGPIVGA 233
>pdb|3T1G|A Chain A, Engineering Of Organophosphate Hydrolase By
Computational Design And Directed Evolution
Length = 353
Score = 26.9 bits (58), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 3/42 (7%)
Query: 40 PLFEPGELKSWSFYR---AGIAEFIATFLFLYISVLTVMGVV 78
PL +PG L W +Y AG E I + ++ + GVV
Sbjct: 56 PLSQPGTLAKWDYYMPVIAGCREAIKRIAYEFVEMKAKEGVV 97
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.140 0.423
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,485,243
Number of Sequences: 62578
Number of extensions: 267554
Number of successful extensions: 521
Number of sequences better than 100.0: 36
Number of HSP's better than 100.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 455
Number of HSP's gapped (non-prelim): 45
length of query: 213
length of database: 14,973,337
effective HSP length: 95
effective length of query: 118
effective length of database: 9,028,427
effective search space: 1065354386
effective search space used: 1065354386
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.5 bits)