Query 028140
Match_columns 213
No_of_seqs 217 out of 1788
Neff 7.7
Searched_HMMs 29240
Date Mon Mar 25 10:55:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028140.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028140hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3cn5_A Aquaporin; membrane pro 100.0 6E-38 2.1E-42 269.4 14.8 178 30-208 38-215 (304)
2 3iyz_A Aquaporin-4; water tran 100.0 2.2E-35 7.5E-40 255.4 17.6 179 31-212 25-208 (340)
3 3gd8_A Aquaporin-4; proton exc 100.0 3.3E-35 1.1E-39 243.0 15.0 158 51-211 2-159 (223)
4 2zz9_A Aquaporin-4; water tran 100.0 3.3E-34 1.1E-38 245.6 15.9 163 46-211 6-168 (301)
5 1j4n_A Aquaporin 1; membrane p 100.0 4E-34 1.4E-38 242.7 16.3 165 45-211 3-171 (271)
6 3d9s_A Aquaporin-5, AQP-5; aqu 100.0 1.4E-33 4.8E-38 238.6 14.3 159 46-211 5-163 (266)
7 3llq_A Aquaporin Z 2; aquapori 100.0 5.1E-33 1.7E-37 233.5 17.1 153 49-203 26-183 (256)
8 2b6o_A Aquaporin-0, lens fiber 100.0 7.2E-33 2.5E-37 234.1 17.7 159 46-211 3-161 (263)
9 2f2b_A Aquaporin AQPM; protein 100.0 4.5E-33 1.5E-37 233.4 14.6 154 51-204 3-170 (246)
10 2w2e_A AQY1, aquaporin, aquapo 100.0 5.7E-32 2E-36 230.1 18.6 151 49-204 41-195 (279)
11 1ldf_A Glycerol uptake facilit 100.0 1.7E-32 5.9E-37 233.9 14.6 151 51-205 6-173 (281)
12 2o9g_A Aquaporin Z; integral m 100.0 7E-32 2.4E-36 224.6 16.4 150 52-203 4-160 (234)
13 3c02_A Aquaglyceroporin; membr 100.0 9.9E-33 3.4E-37 232.7 10.1 151 50-204 7-161 (258)
14 2f2b_A Aquaporin AQPM; protein 99.9 7.5E-23 2.6E-27 171.3 10.1 136 13-156 101-244 (246)
15 2o9g_A Aquaporin Z; integral m 99.8 1.6E-20 5.6E-25 156.0 10.7 136 13-157 85-231 (234)
16 2b6o_A Aquaporin-0, lens fiber 99.8 5.9E-20 2E-24 155.0 13.9 138 13-158 87-225 (263)
17 2w2e_A AQY1, aquaporin, aquapo 99.8 3E-20 1E-24 157.8 11.5 134 13-156 131-264 (279)
18 3llq_A Aquaporin Z 2; aquapori 99.8 3.1E-20 1.1E-24 155.8 10.0 135 13-156 110-253 (256)
19 3iyz_A Aquaporin-4; water tran 99.8 1.1E-19 3.8E-24 157.2 11.7 139 13-159 133-272 (340)
20 3d9s_A Aquaporin-5, AQP-5; aqu 99.8 6.5E-20 2.2E-24 154.9 10.0 138 13-158 89-228 (266)
21 2zz9_A Aquaporin-4; water tran 99.8 9.6E-20 3.3E-24 156.0 10.9 139 12-158 93-232 (301)
22 3gd8_A Aquaporin-4; proton exc 99.8 9.8E-20 3.3E-24 150.2 9.2 136 13-156 85-221 (223)
23 1j4n_A Aquaporin 1; membrane p 99.8 1.8E-19 6.2E-24 152.6 9.8 138 13-158 97-235 (271)
24 3cn5_A Aquaporin; membrane pro 99.8 8.8E-20 3E-24 156.5 7.0 144 13-159 143-290 (304)
25 1ldf_A Glycerol uptake facilit 99.8 9.6E-19 3.3E-23 148.9 8.5 140 13-158 87-257 (281)
26 3c02_A Aquaglyceroporin; membr 99.8 8E-19 2.7E-23 147.8 6.8 140 13-157 89-243 (258)
27 3kcu_A Probable formate transp 71.3 43 0.0015 27.7 13.1 103 90-199 69-183 (285)
28 3s2u_A UDP-N-acetylglucosamine 59.4 1.5 5.1E-05 37.3 -0.7 21 107-127 8-28 (365)
29 3kly_A Putative formate transp 57.4 80 0.0027 26.0 13.3 106 90-199 68-182 (280)
30 3tds_E Formate/nitrite transpo 56.0 83 0.0028 25.7 9.8 107 90-198 65-177 (268)
31 4fc4_A Nitrite transporter NIR 37.5 1.6E+02 0.0056 23.8 11.2 106 90-198 59-171 (261)
No 1
>3cn5_A Aquaporin; membrane protein, transmembrane, transport, transport protein; 2.05A {Spinacia oleracea} PDB: 3cn6_A 3cll_A 1z98_A 2b5f_A
Probab=100.00 E-value=6e-38 Score=269.35 Aligned_cols=178 Identities=76% Similarity=1.288 Sum_probs=141.2
Q ss_pred cccccCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCccchhHHHHHHHHHHHHHHHhhcC
Q 028140 30 GKDYVEPPPAPLFEPGELKSWSFYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAWAFGGMIFVLVYCTAG 109 (213)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~igT~~lv~~~~~~~~~~~~~~~~~~~~~~~~i~~~~G~~v~~~i~~~~~ 109 (213)
.|++.++++.+..+.++..+++++|++++||+||++|+|++++++........+....+++.++++||+.+++.+|++++
T Consensus 38 ~~~~~~~~~~~~~~~~e~~~~~~~r~~lAEfiGT~lLv~~g~gsv~~~~~~~~~~~~~g~l~iala~Glav~~~v~~~g~ 117 (304)
T 3cn5_A 38 GKDYVDPPPAPFFDLGELKLWSFWRAAIAEFIATLLFLYITVATVIGHSKETVVCGSVGLLGIAWAFGGMIFVLVYCTAG 117 (304)
T ss_dssp -----------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSTTCSCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCccCCCcccccCccccccHHHHHHHHHHHHHHHHHHHHHhHHHeEeccccCCCCCCCceeehhhhhhhhheeeeEeec
Confidence 47888877777778888889999999999999999999999998876544333334567888999999999999999999
Q ss_pred CCCcccchhhHHHHHhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhccccccccCCCcccccCCCChhHHHHHHHHHHH
Q 028140 110 ISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDGLGAEIIGTF 189 (213)
Q Consensus 110 iSG~hlNPAvTla~~~~g~~~~~~~~~yi~aQ~lGa~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~i~T~ 189 (213)
+||+|+|||||+++++.|+++|.+.+.||++|++||++|+.+++.++ ++.++..+.+.+.+.++.+..++|+.|+++||
T Consensus 118 iSGaHlNPAVTla~~l~g~~~~~~~~~YiiAQ~lGAi~Ga~lv~~~~-~~~~~~~~~g~~~~~~~~s~~~~f~~E~i~Tf 196 (304)
T 3cn5_A 118 ISGGHINPAVTFGLFLARKVELLRALVYMIAQCLGAICGVGLVKAFM-KGPYNQFGGGANSVALGYNKGTALGAEIIGTF 196 (304)
T ss_dssp TTCCCCSHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHC-HHHHHHTTTTCCCCCTTCCHHHHHHHHHHHHH
T ss_pred cCCCccCcHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHh-hhhhhhccCcccccCCCccHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999 55555555555566778899999999999999
Q ss_pred HHHHHHHHHccCCCCCCCC
Q 028140 190 VLVYTVFSATDAKRSARDS 208 (213)
Q Consensus 190 ~L~~~il~~~d~~~~~~~~ 208 (213)
+|+++|+.++|+||..+++
T Consensus 197 iLv~~Il~~~d~~~~~~~~ 215 (304)
T 3cn5_A 197 VLVYTVFSATDPKRSARDS 215 (304)
T ss_dssp HHHHHHHHTEEEEEESTTS
T ss_pred HHHHHHhheecCccCCCCc
Confidence 9999999999877655444
No 2
>3iyz_A Aquaporin-4; water transport, water channel, two-dimensional C membrane protein, baculovirus expression system, glycoprote membrane; 10.00A {Rattus norvegicus}
Probab=100.00 E-value=2.2e-35 Score=255.36 Aligned_cols=179 Identities=34% Similarity=0.513 Sum_probs=144.2
Q ss_pred ccccCCCCCCCCC-----CCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCccchhHHHHHHHHHHHHHHH
Q 028140 31 KDYVEPPPAPLFE-----PGELKSWSFYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAWAFGGMIFVLVY 105 (213)
Q Consensus 31 ~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~E~igT~~lv~~~~~~~~~~~~~~~~~~~~~~~~i~~~~G~~v~~~i~ 105 (213)
+++.++...|... ..+...+++||++++||+||++|+|++++++++.. ...+....+++.++++||+++++.+|
T Consensus 25 ~~~~~~~~~ps~~~~~~~~~~~~~~~l~r~~lAEflGT~lLV~~G~Gs~a~~~-~~~~~~~~g~l~Iala~GlaV~~~v~ 103 (340)
T 3iyz_A 25 DLYDDDDKDPSSRSIMVAFKGVWTQAFWKAVTAEFLAMLIFVLLSVGSTINWG-GSENPLPVDMVLISLCFGLSIATMVQ 103 (340)
T ss_pred CCCCCCCCCCcchhhhhhhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cCCCCCCcchHHHHHHHHHHHHHhee
Confidence 5566555554322 12334568999999999999999999999987652 22223345788899999999999999
Q ss_pred hhcCCCCcccchhhHHHHHhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhccccccccCCCcccccCCCChhHHHHHHH
Q 028140 106 CTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDGLGAEI 185 (213)
Q Consensus 106 ~~~~iSG~hlNPAvTla~~~~g~~~~~~~~~yi~aQ~lGa~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~ 185 (213)
+++++||||+|||||+++++.|+++|.+++.||++|++||++|+++++.++ ++.... ..+.+.+.++.+..++|+.|+
T Consensus 104 ~~g~ISGAHlNPAVTlal~l~G~~~~~~~~~YiiAQ~lGA~~GA~lv~~~~-~~~~~~-~lg~~~~~~~~s~~~~f~~E~ 181 (340)
T 3iyz_A 104 CFGHISGGHINPAVTVAMVCTRKISIAKSVFYITAQCLGAIIGAGILYLVT-PPSVVG-GLGVTTVHGNLTAGHGLLVEL 181 (340)
T ss_pred EeeccCcCeeChHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhc-chhhcC-ceeeccCCCccCHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999998 443221 223445567789999999999
Q ss_pred HHHHHHHHHHHHHccCCCCCCCCCCCC
Q 028140 186 IGTFVLVYTVFSATDAKRSARDSHVPV 212 (213)
Q Consensus 186 i~T~~L~~~il~~~d~~~~~~~~~~p~ 212 (213)
++||+|+++|++++|++|....+..|+
T Consensus 182 i~Tf~Lv~~Ila~~d~~~~~~~~~~pl 208 (340)
T 3iyz_A 182 IITFQLVFTIFASCDDKRTDVTGSVAL 208 (340)
T ss_pred HHHHHHHHHHHHhhcCccCCcccchhh
Confidence 999999999999999887655555553
No 3
>3gd8_A Aquaporin-4; proton exclusion, structural genomics protein structure initiative, center for structures of MEMB proteins, CSMP, glycoprotein; HET: BOG; 1.80A {Homo sapiens}
Probab=100.00 E-value=3.3e-35 Score=242.96 Aligned_cols=158 Identities=37% Similarity=0.596 Sum_probs=134.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCccchhHHHHHHHHHHHHHHHhhcCCCCcccchhhHHHHHhhccCc
Q 028140 51 SFYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLS 130 (213)
Q Consensus 51 ~~~~~~~~E~igT~~lv~~~~~~~~~~~~~~~~~~~~~~~~i~~~~G~~v~~~i~~~~~iSG~hlNPAvTla~~~~g~~~ 130 (213)
++||++++||+||++|++++++++.+. ..+.+....+++.++++||+.+++.+++++++||+|+|||||+++++.|+++
T Consensus 2 ~~~r~~~aEfiGT~~lv~~g~g~~~~~-~~~~~~~~~~~~~ia~~~Gl~v~~~v~~~g~iSGaHlNPAVTla~~~~g~~~ 80 (223)
T 3gd8_A 2 AFWKAVTAEFLAMLIFVLLSLGSTINW-GGTEKPLPVDMVLISLCFGLSIATMVQCFGHISGGHINPAVTVAMVCTRKIS 80 (223)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCCT-TTTTSCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCSHHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc-ccCCCCCCcchHHHHHHHHHHHHHHHheecccccceEcHHHHHHHHHcCCCC
Confidence 579999999999999999999988754 2222334567888999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhccccccccCCCcccccCCCChhHHHHHHHHHHHHHHHHHHHHccCCCCCCCCCC
Q 028140 131 LTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRSARDSHV 210 (213)
Q Consensus 131 ~~~~~~yi~aQ~lGa~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~i~T~~L~~~il~~~d~~~~~~~~~~ 210 (213)
|.+.+.|+++|++|+++|+.+++.++ +++... +.+.+.+.++.+..++++.|+++||+|++++++++|+||+...+..
T Consensus 81 ~~~~~~Yi~AQ~lGA~~ga~lv~~~~-~~~~~~-~lg~~~~~~~~s~~~~~~~E~i~Tf~Lv~~i~~~~~~~~~~~~~~~ 158 (223)
T 3gd8_A 81 IAKSVFYIAAQCLGAIIGAGILYLVT-PPSVVG-GLGVTMVHGNLTAGHGLLVELIITFQLVFTIFASCDSKRTDVTGSI 158 (223)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHT-TTTCCCCCTTSCHHHHHHHHHHHHHHHHHHHHHHTCTTCSCCCSCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc-cccccc-ceeeccCCCccCHHHHHHHHHHHHHHHHHHHHHHhccccCCccCCc
Confidence 99999999999999999999999998 443221 2244556678899999999999999999999999998876554444
Q ss_pred C
Q 028140 211 P 211 (213)
Q Consensus 211 p 211 (213)
|
T Consensus 159 p 159 (223)
T 3gd8_A 159 A 159 (223)
T ss_dssp H
T ss_pred c
Confidence 4
No 4
>2zz9_A Aquaporin-4; water transport, water channel, two-dimensional crystal, electron diffraction, electron microscopy, membrane protein; HET: PEE; 2.80A {Rattus norvegicus} PDB: 2d57_A
Probab=100.00 E-value=3.3e-34 Score=245.64 Aligned_cols=163 Identities=36% Similarity=0.556 Sum_probs=134.7
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCccchhHHHHHHHHHHHHHHHhhcCCCCcccchhhHHHHHh
Q 028140 46 ELKSWSFYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFL 125 (213)
Q Consensus 46 ~~~~~~~~~~~~~E~igT~~lv~~~~~~~~~~~~~~~~~~~~~~~~i~~~~G~~v~~~i~~~~~iSG~hlNPAvTla~~~ 125 (213)
+....++||++++||+||++|+|++++++++... ..+....+++.++++||+.+++.+++++++||+|+|||||+++++
T Consensus 6 ~~~~~~~~r~~lAEflGT~lLv~~g~Gs~~~~~~-~~~~~~~~~l~iala~Glav~~~v~~~g~iSGaHlNPAVTla~~~ 84 (301)
T 2zz9_A 6 GVWTQAFWKAVTAEFLAMLIFVLLSVGSTINWGG-SENPLPVDMVLISLCFGLSIATMVQCFGHISGGHINPAVTVAMVC 84 (301)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHHTTSCCTTC-C-CCCCCCHHHHHHHHHHHHHHHHHHHGGGTCCCCSHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-CCCCCCcchHHHHHHHHHHHHHhhheeccCCcceeChHHHHHHHH
Confidence 3445789999999999999999999988765432 222334567889999999999999999999999999999999999
Q ss_pred hccCcchhHHHHHHHHHHHHHHHHHHHHHHhccccccccCCCcccccCCCChhHHHHHHHHHHHHHHHHHHHHccCCCCC
Q 028140 126 ARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRSA 205 (213)
Q Consensus 126 ~g~~~~~~~~~yi~aQ~lGa~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~i~T~~L~~~il~~~d~~~~~ 205 (213)
.|+++|.+.+.|+++|++||++|+++++.++++ .... +.+.+.+.++.+..++|+.|+++||+|++++++++|++|..
T Consensus 85 ~g~~~~~~~~~YiiAQ~lGAi~Ga~lv~~~~~~-~~~~-~~g~~~~~~~~s~~~~f~~E~i~Tf~Lv~~Il~~~d~~~~~ 162 (301)
T 2zz9_A 85 TRKISIAKSVFYITAQCLGAIIGAGILYLVTPP-SVVG-GLGVTTVHGNLTAGHGLLVELIITFQLVFTIFASCDDKRTD 162 (301)
T ss_dssp TSSSCTTTTHHHHHHHHHHHHHHHHHHHTTSCS-CGGG-TSSCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHSCSSSSC
T ss_pred hcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccc-cccC-ceeeecCCcccchHHHHHHHHHHHHHHHHHHHHhcCCCCCC
Confidence 999999999999999999999999999999943 3221 23344556778899999999999999999999999887764
Q ss_pred CCCCCC
Q 028140 206 RDSHVP 211 (213)
Q Consensus 206 ~~~~~p 211 (213)
..+..|
T Consensus 163 ~~~~~p 168 (301)
T 2zz9_A 163 VTGSVA 168 (301)
T ss_dssp CSSCHH
T ss_pred ccchHh
Confidence 444333
No 5
>1j4n_A Aquaporin 1; membrane protein, channel protein, transmembrane helices; HET: BNG; 2.20A {Bos taurus} SCOP: f.19.1.1 PDB: 1h6i_A 1fqy_A 1ih5_A
Probab=100.00 E-value=4e-34 Score=242.67 Aligned_cols=165 Identities=38% Similarity=0.613 Sum_probs=135.9
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc----CCCCCccchhHHHHHHHHHHHHHHHhhcCCCCcccchhhH
Q 028140 45 GELKSWSFYRAGIAEFIATFLFLYISVLTVMGVVKS----NTKCSTVGIQGIAWAFGGMIFVLVYCTAGISGGHINPAVT 120 (213)
Q Consensus 45 ~~~~~~~~~~~~~~E~igT~~lv~~~~~~~~~~~~~----~~~~~~~~~~~i~~~~G~~v~~~i~~~~~iSG~hlNPAvT 120 (213)
+|.++++++|++++||+||++|+|++++++...... +..+...+++.++++||+.+++.+++++++||+|+|||||
T Consensus 3 ~e~~~~~~~r~~~aEflGT~llv~~g~g~~~~~~~~~~~~~~~g~~~~~~~ial~~Gl~v~~~i~~~g~iSGaHlNPAVT 82 (271)
T 1j4n_A 3 SEFKKKLFWRAVVAEFLAMILFIFISIGSALGFHYPIKSNQTTGAVQDNVKVSLAFGLSIATLAQSVGHISGAHLNPAVT 82 (271)
T ss_dssp STTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGCCCSSCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccCcccchHHHHHHHHHHHHHHHHHHhcCCcceEcHHHH
Confidence 356667899999999999999999999988764321 1112234578899999999999999999999999999999
Q ss_pred HHHHhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhccccccccCCCcccccCCCChhHHHHHHHHHHHHHHHHHHHHcc
Q 028140 121 LGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATD 200 (213)
Q Consensus 121 la~~~~g~~~~~~~~~yi~aQ~lGa~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~i~T~~L~~~il~~~d 200 (213)
+++++.|+++|.+.+.||++|++||++|+.+++.++ ++... ...+.+...++++..++|+.|+++||+|++++++++|
T Consensus 83 la~~~~g~~~~~~~~~Yi~AQ~lGa~~ga~l~~~~~-~~~~~-~~~g~~~~~~~~~~~~~~~~E~i~T~~Lv~~i~~~~d 160 (271)
T 1j4n_A 83 LGLLLSCQISVLRAIMYIIAQCVGAIVATAILSGIT-SSLPD-NSLGLNALAPGVNSGQGLGIEIIGTLQLVLCVLATTD 160 (271)
T ss_dssp HHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHT-TTCTT-CCTTCCCCCTTCCTTGGGHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHc-cCCcc-cccccccCCCccchHHHHHHHHHHHHHHHHHHHhhcc
Confidence 999999999999999999999999999999999998 33211 1223344567788899999999999999999999998
Q ss_pred CCCCCCCCCCC
Q 028140 201 AKRSARDSHVP 211 (213)
Q Consensus 201 ~~~~~~~~~~p 211 (213)
+||...++..|
T Consensus 161 ~~~~~~~~~~p 171 (271)
T 1j4n_A 161 RRRRDLGGSGP 171 (271)
T ss_dssp SSCCCCCSCHH
T ss_pred ccCCCccccHH
Confidence 87755444444
No 6
>3d9s_A Aquaporin-5, AQP-5; aquaglyceroporin, membrane protein, water transport, X-RAY diffraction, lipid, phosphatidylserine, PSF, NPA, AR/R, water channel; HET: PS6; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.4e-33 Score=238.61 Aligned_cols=159 Identities=35% Similarity=0.522 Sum_probs=133.4
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCccchhHHHHHHHHHHHHHHHhhcCCCCcccchhhHHHHHh
Q 028140 46 ELKSWSFYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFL 125 (213)
Q Consensus 46 ~~~~~~~~~~~~~E~igT~~lv~~~~~~~~~~~~~~~~~~~~~~~~i~~~~G~~v~~~i~~~~~iSG~hlNPAvTla~~~ 125 (213)
|.++++++|++++||+||++|+|++++++.... + ...+++.+++++|+.+++.+++++++||+|+|||||+++++
T Consensus 5 e~~~~~~~r~~laEfiGT~~lv~~g~g~~~~~~----~-~~~~~l~ial~~Glav~~~i~~~g~iSGaHlNPAVTla~~~ 79 (266)
T 3d9s_A 5 EVCSVAFLKAVFAEFLATLIFVFFGLGSALKWP----S-ALPTILQIALAFGLAIGTLAQALGPVSGGHINPAITLALLV 79 (266)
T ss_dssp HHTSHHHHHHHHHHHHHHHHHHHHHHHHHSCCS----S-SCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
T ss_pred hhhChHHHHHHHHHHHHHHHHHHHHHHHHhCCC----C-CCccHHHHHHHHHHHHHHHHHHHcccCcceECHHHHHHHHH
Confidence 445678899999999999999999998875321 1 22467889999999999999999999999999999999999
Q ss_pred hccCcchhHHHHHHHHHHHHHHHHHHHHHHhccccccccCCCcccccCCCChhHHHHHHHHHHHHHHHHHHHHccCCCCC
Q 028140 126 ARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRSA 205 (213)
Q Consensus 126 ~g~~~~~~~~~yi~aQ~lGa~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~i~T~~L~~~il~~~d~~~~~ 205 (213)
.|+++|.+.+.|+++|++||++|+.+++.++ ++.... ..+.+.+.++.+..++|+.|+++||+|++++++++|+||+.
T Consensus 80 ~g~~~~~~~~~Yi~AQ~lGA~~ga~l~~~~~-~~~~~~-~~g~~~~~~~~s~~~~~~~E~i~Tf~Lv~~il~~~d~~~~~ 157 (266)
T 3d9s_A 80 GNQISLLRAFFYVAAQLVGAIAGAGILYGVA-PLNARG-NLAVNALNNNTTQGQAMVVELILTFQLALCIFASTDSRRTS 157 (266)
T ss_dssp TSSSCHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHT-TTTCCCCCTTSCHHHHHHHHHHHHHHHHHHHHHHHCTTCCS
T ss_pred hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHc-cccccC-ceeeccCCccccHHHHHHHHHHHHHHHHHHHHHHhcccCCC
Confidence 9999999999999999999999999999999 443221 22344455678899999999999999999999999887765
Q ss_pred CCCCCC
Q 028140 206 RDSHVP 211 (213)
Q Consensus 206 ~~~~~p 211 (213)
..+..|
T Consensus 158 ~~~~~p 163 (266)
T 3d9s_A 158 PVGSPA 163 (266)
T ss_dssp CCCCHH
T ss_pred ccchHH
Confidence 444444
No 7
>3llq_A Aquaporin Z 2; aquaporin tetramer, membrane protein, water channel, structu genomics, PSI-2, protein structure initiative; 2.01A {Agrobacterium tumefaciens str}
Probab=100.00 E-value=5.1e-33 Score=233.53 Aligned_cols=153 Identities=27% Similarity=0.393 Sum_probs=124.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCccchhHHHHHHHHHHHHHHHhhcCCCCcccchhhHHHHHhhcc
Q 028140 49 SWSFYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARK 128 (213)
Q Consensus 49 ~~~~~~~~~~E~igT~~lv~~~~~~~~~~~~~~~~~~~~~~~~i~~~~G~~v~~~i~~~~~iSG~hlNPAvTla~~~~g~ 128 (213)
..+++|++++||+||++|++++|+++......+ ....+++.++++||+.+++.+++++++||+|+|||||+++++.|+
T Consensus 26 ~~~l~r~~laEflGT~lLv~~G~G~~~~~~~~~--~~~~~~l~iala~Glav~~~i~~~g~iSGaHlNPAVTla~~~~g~ 103 (256)
T 3llq_A 26 SYVMGRKLLAEFFGTFWLVFGGCGSAVFAAAFP--ELGIGFTGVALAFGLTVLTMAYAVGGISGGHFNPAVSVGLTVAGR 103 (256)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHTTCT--TTCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCSHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC--CCCccHHHHHHHHHHHHHHHHheeeccccceEchHHHHHHHHhcC
Confidence 346789999999999999999999875433221 234568889999999999999999999999999999999999999
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHhcc-ccccccCC---Cccccc-CCCChhHHHHHHHHHHHHHHHHHHHHccCCC
Q 028140 129 LSLTRALFYMVMQCLGAICGAGVVKGFMGA-GQYGRLAG---GANVVA-HGYTKGDGLGAEIIGTFVLVYTVFSATDAKR 203 (213)
Q Consensus 129 ~~~~~~~~yi~aQ~lGa~~ga~~~~~~~~~-~~~~~~~~---~~~~~~-~~~~~~~~~~~E~i~T~~L~~~il~~~d~~~ 203 (213)
++|.+.+.|+++|++||++|+.+++.+++. ..++..+. +..... ...+..++|+.|+++||+|++++++++|+|+
T Consensus 104 ~~~~~~~~YiiAQ~lGA~~ga~lv~~~~~~~~~~~~~~~~~~~~~~t~p~~~s~~~~f~~E~i~Tf~Lv~~il~~~d~~~ 183 (256)
T 3llq_A 104 FPASSLVPYVIAQVAGAIVAAAALYVIATGKAGIDLGGFASNGYGEHSPGGYSLVSALLIEIILTAFFLIVILGSTHGRV 183 (256)
T ss_dssp SCGGGHHHHHHHHHHHHHHHHHHHHHHHTTBTTCCCTTTTCCCCGGGSTTCCCHHHHHHHHHHHHHHHHHHHHHHHSTTS
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccccccccccccCCcccCHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 999999999999999999999999999832 22332111 111112 3568899999999999999999999998765
No 8
>2b6o_A Aquaporin-0, lens fiber major intrinsic protein; aquaporin-0 junctions, AQP0, lens MIP, lipid-protein interac membrane, lipid bilayer; HET: MC3; 1.90A {Ovis aries} SCOP: f.19.1.1 PDB: 1ymg_A* 2b6p_A 2c32_A 1sor_A 3m9i_A*
Probab=100.00 E-value=7.2e-33 Score=234.05 Aligned_cols=159 Identities=33% Similarity=0.484 Sum_probs=133.1
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCccchhHHHHHHHHHHHHHHHhhcCCCCcccchhhHHHHHh
Q 028140 46 ELKSWSFYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFL 125 (213)
Q Consensus 46 ~~~~~~~~~~~~~E~igT~~lv~~~~~~~~~~~~~~~~~~~~~~~~i~~~~G~~v~~~i~~~~~iSG~hlNPAvTla~~~ 125 (213)
|.++++++|++++||+||++|+|++++++... +....+++.+++++|+.+++.+++++++||+|+|||||+++++
T Consensus 3 e~~~~~~~~~~laEfiGT~~Lv~~g~g~~~~~-----~~~~~~~l~i~l~~Gl~v~~~i~~~g~iSGahlNPAVTla~~~ 77 (263)
T 2b6o_A 3 ELRSASFWRAIFAEFFATLFYVFFGLGASLRW-----APGPLHVLQVALAFGLALATLVQAVGHISGAHVNPAVTFAFLV 77 (263)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHSCC-----CSSSCHHHHHHHHHHHHHHHHHHHGGGTTCCCCSHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHhcC-----CCCCcchHHHHHHHHHHHHHHHHHhhccCcCeeChHHHHHHHH
Confidence 55667899999999999999999999877532 1123456788999999999999999999999999999999999
Q ss_pred hccCcchhHHHHHHHHHHHHHHHHHHHHHHhccccccccCCCcccccCCCChhHHHHHHHHHHHHHHHHHHHHccCCCCC
Q 028140 126 ARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRSA 205 (213)
Q Consensus 126 ~g~~~~~~~~~yi~aQ~lGa~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~i~T~~L~~~il~~~d~~~~~ 205 (213)
.|+++|.+.+.||++|++||++|+.+++.++ ++.++. ..+.+.+.++.+..++|+.|+++||+|++++++++|++|+.
T Consensus 78 ~g~~~~~~~~~Yi~AQ~lGa~~ga~l~~~~~-~~~~~~-~~~~~~~~~~~s~~~~~~~E~i~Tf~Lv~~il~~~d~~~~~ 155 (263)
T 2b6o_A 78 GSQMSLLRAICYVVAQLLGAVAGAAVLYSVT-PPAVRG-NLALNTLHPGVSVGQATIVEIFLTLQFVLCIFATYDERRNG 155 (263)
T ss_dssp TTCSCHHHHHHHHHHHHHHHHHHHHHHHHHS-CTTTCS-SCSCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTSCS
T ss_pred hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHc-cccccc-ccccccCCccccHHHHHHHHHHHHHHHHHHHHHHhcccCCC
Confidence 9999999999999999999999999999999 443321 22345566788999999999999999999999999877754
Q ss_pred CCCCCC
Q 028140 206 RDSHVP 211 (213)
Q Consensus 206 ~~~~~p 211 (213)
..+..|
T Consensus 156 ~~~~~p 161 (263)
T 2b6o_A 156 RLGSVA 161 (263)
T ss_dssp SCCCHH
T ss_pred CcccHH
Confidence 444444
No 9
>2f2b_A Aquaporin AQPM; protein, integral membrane protein, channel, structural GENO PSI-2, protein structure initiative; 1.68A {Methanothermobacter marburgensis str} PDB: 2evu_A 3ne2_A*
Probab=100.00 E-value=4.5e-33 Score=233.42 Aligned_cols=154 Identities=30% Similarity=0.409 Sum_probs=125.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcc-ccCC--------CC-----CccchhHHHHHHHHHHHHHHHhhcCCCCcccc
Q 028140 51 SFYRAGIAEFIATFLFLYISVLTVMGVV-KSNT--------KC-----STVGIQGIAWAFGGMIFVLVYCTAGISGGHIN 116 (213)
Q Consensus 51 ~~~~~~~~E~igT~~lv~~~~~~~~~~~-~~~~--------~~-----~~~~~~~i~~~~G~~v~~~i~~~~~iSG~hlN 116 (213)
+++|++++||+||++|+|++++++.... .+++ .+ ...+++.+++++|+.+++.+++++++||+|+|
T Consensus 3 ~~~~~~~aEfiGT~~lv~~g~g~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~~ia~~~Gl~v~~~v~~~g~iSGaH~N 82 (246)
T 2f2b_A 3 SLTKRCIAEFIGTFILVFFGAGSAAVTLMIASGGTSPNPFNIGIGLLGGLGDWVAIGLAFGFAIAASIYALGNISGCHIN 82 (246)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSSTTCCSTTTTTTHHHHHHHHHHHHHHHHHHHHHHTTTTCCCCS
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCccccccccccccccccccchhHHHHHHHHHHHHHhheecccccceeC
Confidence 3689999999999999999998877643 1110 01 12335669999999999999999999999999
Q ss_pred hhhHHHHHhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhccccccccCCCcccccCCCChhHHHHHHHHHHHHHHHHHH
Q 028140 117 PAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDGLGAEIIGTFVLVYTVF 196 (213)
Q Consensus 117 PAvTla~~~~g~~~~~~~~~yi~aQ~lGa~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~i~T~~L~~~il 196 (213)
||||+++++.|+++|++.+.|+++|++||++|+.+++.+++++.....+.+.+.+.++.+..++++.|+++||+|+++++
T Consensus 83 PAVTla~~~~g~~~~~~~~~Yi~AQ~lGa~~ga~l~~~~~~~~~~~~~~~~~t~p~~~~~~~~~~~~E~i~Tf~Lv~~i~ 162 (246)
T 2f2b_A 83 PAVTIGLWSVKKFPGREVVPYIIAQLLGAAFGSFIFLQCAGIGAATVGGLGATAPFPGISYWQAMLAEVVGTFLLMITIM 162 (246)
T ss_dssp HHHHHHHHHTTSSCGGGHHHHHHHHHHHHHHHHHHHHHHHCTHHHHTTGGGCCCCCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhcceeeeccCccccchHHHHHHHHHHHHHHHheee
Confidence 99999999999999999999999999999999999999995432222222334445678899999999999999999999
Q ss_pred HHccCCCC
Q 028140 197 SATDAKRS 204 (213)
Q Consensus 197 ~~~d~~~~ 204 (213)
++.+++|.
T Consensus 163 ~~~~~~~~ 170 (246)
T 2f2b_A 163 GIAVDERA 170 (246)
T ss_dssp HHTTSTTS
T ss_pred EEecCCCC
Confidence 97765543
No 10
>2w2e_A AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating, membrane protein; HET: BOG; 1.15A {Komagataella pastoris} PDB: 2w1p_A*
Probab=100.00 E-value=5.7e-32 Score=230.06 Aligned_cols=151 Identities=29% Similarity=0.425 Sum_probs=125.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhccc----cCCCCCccchhHHHHHHHHHHHHHHHhhcCCCCcccchhhHHHHH
Q 028140 49 SWSFYRAGIAEFIATFLFLYISVLTVMGVVK----SNTKCSTVGIQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLF 124 (213)
Q Consensus 49 ~~~~~~~~~~E~igT~~lv~~~~~~~~~~~~----~~~~~~~~~~~~i~~~~G~~v~~~i~~~~~iSG~hlNPAvTla~~ 124 (213)
.++.+|++++||+||++|+|++++++..... .+......+++.++++||+.+++.+++++++||+|+|||||++++
T Consensus 41 ~~~~~r~~laEfiGT~~Lv~~g~g~~~~~~~~~~~~~~~~~~~~~l~iala~Glav~~~v~~~g~iSGaHlNPAVTla~~ 120 (279)
T 2w2e_A 41 VRNHFIAMSGEFVGTFLFLWSAFVIAQIANQAPETPDGGSNPAQLIMISFGFGFGVMVGVFITYRVSGGNLNPAVTLALV 120 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCGGGCCCHHHHHHHHHHHHHHHHHHHHHHTTTTCCCCSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCccHHHHHHHHHHHHHHHHHHHhhcCccccChHHHHHHH
Confidence 3578999999999999999999886432111 111222345778999999999999999999999999999999999
Q ss_pred hhccCcchhHHHHHHHHHHHHHHHHHHHHHHhccccccccCCCcccccCCCChhHHHHHHHHHHHHHHHHHHHHccCCCC
Q 028140 125 LARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRS 204 (213)
Q Consensus 125 ~~g~~~~~~~~~yi~aQ~lGa~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~i~T~~L~~~il~~~d~~~~ 204 (213)
+.|+++|.+.+.|+++|++||++|+++++.++ ++... ..+.+.++.+..++|+.|+++||+|+++++++.++++.
T Consensus 121 ~~g~~~~~~~~~YiiAQ~lGA~~ga~lv~~~~-~~~~~----~~t~~~~~~s~~~~~~~E~i~Tf~Lv~~Il~~~~~~~~ 195 (279)
T 2w2e_A 121 LARAIPPFRGILMAFTQIVAGMAAAGAASAMT-PGEIA----FANALGGGASRTRGLFLEAFGTAILCLTVLMLAVEKHR 195 (279)
T ss_dssp HTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHS-CSSCC----CSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHTTSCST
T ss_pred HcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHc-cccce----eeccCCccccHHHHHHHHHHHHHHHHHHHHHHccCCCC
Confidence 99999999999999999999999999999999 44321 22445567889999999999999999999998876553
No 11
>1ldf_A Glycerol uptake facilitator protein; glycerol-conducting membrane channel protein, transport PROT; HET: BOG; 2.10A {Escherichia coli} SCOP: f.19.1.1 PDB: 1fx8_A* 1lda_A* 1ldi_A*
Probab=100.00 E-value=1.7e-32 Score=233.90 Aligned_cols=151 Identities=26% Similarity=0.378 Sum_probs=126.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCccchhHHHHHHHHHHHHHHHhhcCCCCcccchhhHHHHHhhccCc
Q 028140 51 SFYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLS 130 (213)
Q Consensus 51 ~~~~~~~~E~igT~~lv~~~~~~~~~~~~~~~~~~~~~~~~i~~~~G~~v~~~i~~~~~iSG~hlNPAvTla~~~~g~~~ 130 (213)
+++|++++||+||++|+|++++++.....++. ..+.+.++++||+.+++.+++++++||+|+|||||+++++.|+++
T Consensus 6 ~~~~~~laEflGT~~Lv~~G~g~~~~~~l~~~---~~g~~~ia~~~Glav~~~i~~~g~iSGaHlNPAVTla~~~~g~~~ 82 (281)
T 1ldf_A 6 TLKGQCIAEFLGTGLLIFFGVGCVAALKVAGA---SFGQWEISVIFGLGVAMAIYLTAGVSGAHLNPAVTIALWLFACFD 82 (281)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC---CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCSHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC---CCchHHHHHHHHHHHHHHhheecccCcCeeChHHHHHHHHcCCCC
Confidence 47899999999999999999988765443321 234456899999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhcccccccc-----------------CCCcccccCCCChhHHHHHHHHHHHHHHH
Q 028140 131 LTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRL-----------------AGGANVVAHGYTKGDGLGAEIIGTFVLVY 193 (213)
Q Consensus 131 ~~~~~~yi~aQ~lGa~~ga~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~E~i~T~~L~~ 193 (213)
|.+.+.|+++|++||++|+.+++.++ ++.++.. +...+.+.++.+..++|+.|+++||+|++
T Consensus 83 ~~~~~~Yi~AQ~lGA~~ga~l~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~f~t~p~~~~s~~~~~~~E~i~Tf~Lv~ 161 (281)
T 1ldf_A 83 KRKVIPFIVSQVAGAFCAAALVYGLY-YNLFFDFEQTHHIVRGSVESVDLAGTFSTYPNPHINFVQAFAVEMVITAILMG 161 (281)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHTTCCTTSGGGHHHHTTTSCCCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh-hhhhhhccccccccccccccccccceeeccCCccccHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999 4432211 11123345567899999999999999999
Q ss_pred HHHHHccCCCCC
Q 028140 194 TVFSATDAKRSA 205 (213)
Q Consensus 194 ~il~~~d~~~~~ 205 (213)
++++++|+||..
T Consensus 162 ~il~~~d~~~~~ 173 (281)
T 1ldf_A 162 LILALTDDGNGV 173 (281)
T ss_dssp HHHHHHCTTSSS
T ss_pred HHHHHhccCCCC
Confidence 999999987653
No 12
>2o9g_A Aquaporin Z; integral membrane protein, structural genomics, P protein structure initiative, center for structures of MEMB proteins, CSMP; HET: BOG; 1.90A {Escherichia coli} PDB: 2o9f_A* 2o9d_A* 2o9e_A 1rc2_B* 2abm_A* 3nk5_A* 3nka_A* 3nkc_A*
Probab=99.98 E-value=7e-32 Score=224.57 Aligned_cols=150 Identities=24% Similarity=0.386 Sum_probs=123.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCccchhHHHHHHHHHHHHHHHhhcCCCCcccchhhHHHHHhhccCcc
Q 028140 52 FYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSL 131 (213)
Q Consensus 52 ~~~~~~~E~igT~~lv~~~~~~~~~~~~~~~~~~~~~~~~i~~~~G~~v~~~i~~~~~iSG~hlNPAvTla~~~~g~~~~ 131 (213)
++|++++||+||++|+|++++++...... +..+.+++.+++++|+.+++.+++++++||+|+|||||+++++.|+++|
T Consensus 4 l~r~~~aEf~GT~~lv~~g~g~~~~~~~~--~~~~~~~l~ia~~~Gl~v~~~i~~~g~iSGaHlNPAVTla~~~~g~~~~ 81 (234)
T 2o9g_A 4 MFRKLAAESFGTFWLVFGGSGSAVLAAGF--PELGIGFAGVALAFGLTVLTMAFAVGHISGGHFNPAVTIGLWAGGRFPA 81 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTTC--TTTCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCSHHHHHHHHHTTSSCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcccCC--CCCCcChHHHHHHHHHHHHHHHHHhhccCcceeCHHHHHHHHHhCCCCH
Confidence 68999999999999999999887432211 1234467889999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhccc-ccccc-----CCCccc-ccCCCChhHHHHHHHHHHHHHHHHHHHHccCCC
Q 028140 132 TRALFYMVMQCLGAICGAGVVKGFMGAG-QYGRL-----AGGANV-VAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKR 203 (213)
Q Consensus 132 ~~~~~yi~aQ~lGa~~ga~~~~~~~~~~-~~~~~-----~~~~~~-~~~~~~~~~~~~~E~i~T~~L~~~il~~~d~~~ 203 (213)
++.+.|+++|++||++|+.+++.++++. +++.. ..+... ...+.+..++|+.|+++||+|++++++++|+|+
T Consensus 82 ~~~~~Yi~aQ~lGa~~ga~l~~~~~~~~~~~~~~~~~~~~~~~~~t~p~~~~~~~~~~~E~i~T~~Lv~~i~~~~d~~~ 160 (234)
T 2o9g_A 82 KEVVGYVIAQVVGGIVAAALLYLIASGKTGFDAAASGFASNGYGEHSPGGYSMLSALVVELVLSAGFLLVIHGATDKFA 160 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHCTTCCCCGGGSTTCCCHHHHHHHHHHHHHHHHHHHHHHTSTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccccccccceeeecCCCccchHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 9999999999999999999999998432 23211 111111 122578899999999999999999999998653
No 13
>3c02_A Aquaglyceroporin; membrane protein, glycerol, water, transport, structural GEN PSI-2, protein structure initiative; HET: BOG; 2.05A {Plasmodium falciparum}
Probab=99.98 E-value=9.9e-33 Score=232.74 Aligned_cols=151 Identities=23% Similarity=0.315 Sum_probs=124.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCccchhHHHHHHHHHHHHHHHhhcCCCCcccchhhHHHHHhhccC
Q 028140 50 WSFYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKL 129 (213)
Q Consensus 50 ~~~~~~~~~E~igT~~lv~~~~~~~~~~~~~~~~~~~~~~~~i~~~~G~~v~~~i~~~~~iSG~hlNPAvTla~~~~g~~ 129 (213)
++++|++++||+||++|+|++++++.+....+ ...+++.+++++|+.+++.+++++++||+|+|||||+++++.|++
T Consensus 7 ~~~~~~~~aEflGT~~lv~~G~g~~~~~~~~~---~~~~~l~ia~~~Glav~~~i~~~g~iSGaHlNPAVTla~~~~g~~ 83 (258)
T 3c02_A 7 KSYVREFIGEFLGTFVLMFLGEGATANFHTTG---LSGDWYKLCLGWGLAVFFGILVSAKLSGAHLNLAVSIGLSSINKF 83 (258)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS---STTCHHHHHHHHHHHHHHHHHHHHHHHCCCCSHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC---CCccHHHHHHHHHHHHHHHHheecccCcCeeChHHHHHHHHhCCC
Confidence 45789999999999999999998876544221 134678899999999999999999999999999999999999999
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHhccccccccCC----CcccccCCCChhHHHHHHHHHHHHHHHHHHHHccCCCC
Q 028140 130 SLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAG----GANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRS 204 (213)
Q Consensus 130 ~~~~~~~yi~aQ~lGa~~ga~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~E~i~T~~L~~~il~~~d~~~~ 204 (213)
+|.+.+.|+++|++||++|+.+++.++ ++.++.... +......+.+..++|+.|+++||+|++++++++|+||+
T Consensus 84 ~~~~~~~Yi~AQ~lGa~~ga~l~~~~~-~~~~~~~~~~~~~~~~~~~~t~p~~~~~~~E~i~Tf~Lv~~i~~~~d~~~~ 161 (258)
T 3c02_A 84 DLKKIPVYFFAQLLGAFVGTSTVYGLY-HGFISNSKIPQFAWETSRNPSISLTGAFFNELILTGILLLVILVVVDENIC 161 (258)
T ss_dssp CGGGHHHHHHHHHHHHHHHHHHHHHHT-HHHHHTTCSCTTCSSCCCCTTSCHHHHHHHHHHHHHHHHHHHHHHHCHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHc-chhhhhccccccccccccCCCCchHHHHHHHHHHHHHHHHHHHHHhCcccC
Confidence 999999999999999999999999999 544432211 11122234556679999999999999999999987754
No 14
>2f2b_A Aquaporin AQPM; protein, integral membrane protein, channel, structural GENO PSI-2, protein structure initiative; 1.68A {Methanothermobacter marburgensis str} PDB: 2evu_A 3ne2_A*
Probab=99.88 E-value=7.5e-23 Score=171.30 Aligned_cols=136 Identities=18% Similarity=0.142 Sum_probs=104.4
Q ss_pred cchhhHHHHHHHHHHhhcccccCCCC--CCCCCCCCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCccch
Q 028140 13 NKFAERQPIGTAAQTQDGKDYVEPPP--APLFEPGEL-KSWSFYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVGI 89 (213)
Q Consensus 13 ~~Y~~aQ~~G~~~~~~~~~~~~~~~~--~~~~~~~~~-~~~~~~~~~~~E~igT~~lv~~~~~~~~~~~~~~~~~~~~~~ 89 (213)
.-|+++|++|+++|+.+++...+++. ......... ...+.++.++.|+++|++|++++++...... . . .
T Consensus 101 ~~Yi~AQ~lGa~~ga~l~~~~~~~~~~~~~~~~~t~p~~~~~~~~~~~~E~i~Tf~Lv~~i~~~~~~~~---~-~----~ 172 (246)
T 2f2b_A 101 VPYIIAQLLGAAFGSFIFLQCAGIGAATVGGLGATAPFPGISYWQAMLAEVVGTFLLMITIMGIAVDER---A-P----K 172 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCTHHHHTTGGGCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHTTSTT---S-C----T
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCccchhcceeeeccCccccchHHHHHHHHHHHHHHHheeeEEecCCC---C-C----C
Confidence 36999999999999998766554311 011111111 2345789999999999999999876543211 1 1 1
Q ss_pred hHHHHHHHHHHHHHHHhhcCCCCcccchhhHHHHHh-----hccCcchhHHHHHHHHHHHHHHHHHHHHHHh
Q 028140 90 QGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFL-----ARKLSLTRALFYMVMQCLGAICGAGVVKGFM 156 (213)
Q Consensus 90 ~~i~~~~G~~v~~~i~~~~~iSG~hlNPAvTla~~~-----~g~~~~~~~~~yi~aQ~lGa~~ga~~~~~~~ 156 (213)
...++++|+.++..+++.+++||+|+|||||+++++ .++..|.+.|+||++|++|+++|+++++.++
T Consensus 173 ~~~pl~iGl~v~~~~~~~g~~TG~~iNPAr~lgp~l~~~~~g~~~~w~~~~vy~vap~~Ga~laa~~y~~l~ 244 (246)
T 2f2b_A 173 GFAGIIIGLTVAGIITTLGNISGSSLNPARTFGPYLNDMIFAGTDLWNYYSIYVIGPIVGAVLAALTYQYLT 244 (246)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCGGGTTHHHHHHHHHHHHHHHHHHHHT
T ss_pred ceeeHHHHHHHHHHHhcccccCCCccCHHHHHHHHHHHHHcCCCCCcceEEEeeeHHHHHHHHHHHHHHHHc
Confidence 134889999999999999999999999999999998 3356788999999999999999999998876
No 15
>2o9g_A Aquaporin Z; integral membrane protein, structural genomics, P protein structure initiative, center for structures of MEMB proteins, CSMP; HET: BOG; 1.90A {Escherichia coli} PDB: 2o9f_A* 2o9d_A* 2o9e_A 1rc2_B* 2abm_A* 3nk5_A* 3nka_A* 3nkc_A*
Probab=99.83 E-value=1.6e-20 Score=155.98 Aligned_cols=136 Identities=13% Similarity=0.118 Sum_probs=102.5
Q ss_pred cchhhHHHHHHHHHHhhcccccCCCC----------CCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCC
Q 028140 13 NKFAERQPIGTAAQTQDGKDYVEPPP----------APLFEPGELKSWSFYRAGIAEFIATFLFLYISVLTVMGVVKSNT 82 (213)
Q Consensus 13 ~~Y~~aQ~~G~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~E~igT~~lv~~~~~~~~~~~~~~~ 82 (213)
.-|+++|++|+++|+.+++...+... ............+.++.++.|+++|++|++.++.... .+
T Consensus 85 ~~Yi~aQ~lGa~~ga~l~~~~~~~~~~~~~~~~~~~~~~~~~t~p~~~~~~~~~~~E~i~T~~Lv~~i~~~~d--~~--- 159 (234)
T 2o9g_A 85 VGYVIAQVVGGIVAAALLYLIASGKTGFDAAASGFASNGYGEHSPGGYSMLSALVVELVLSAGFLLVIHGATD--KF--- 159 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHCTTCCCCGGGSTTCCCHHHHHHHHHHHHHHHHHHHHHHTS--TT---
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCcccccccccccccceeeecCCCccchHHHHHHHHHHHHHHHHHHHHhcC--CC---
Confidence 36999999999999997754443211 0011111112345789999999999999998876431 11
Q ss_pred CCCccchhHHHHHHHHHHHHHHHhhcCCCCcccchhhHHHHHhhc-cCcchhHHHHHHHHHHHHHHHHHHHHHHhc
Q 028140 83 KCSTVGIQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLAR-KLSLTRALFYMVMQCLGAICGAGVVKGFMG 157 (213)
Q Consensus 83 ~~~~~~~~~i~~~~G~~v~~~i~~~~~iSG~hlNPAvTla~~~~g-~~~~~~~~~yi~aQ~lGa~~ga~~~~~~~~ 157 (213)
.... ..++.+|+.+....++.++.||+.+||||++++++.. ...|.++|+||++|++|+++|+++++.++.
T Consensus 160 ~~~~----~~pl~IGl~v~~~~~~~g~~TG~s~NPAR~lGPal~~g~~~~~~~Wv~~vgP~~Ga~la~~~y~~~~~ 231 (234)
T 2o9g_A 160 APAG----FAPIAIGLACTLIHLISIPVTNTSVNPARSTAVAIFQGGWALEQLWFFWVVPIVGGIIGGLIYRTLLE 231 (234)
T ss_dssp SCTT----CHHHHHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHCSHHHHSHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred Cccc----hHHHHHHHHHHHHHHHccCCCccccChHHHHHHHHHhCCCCCceeeeeehHHhHHHHHHHHHHHHHcC
Confidence 1111 2478899999999999999999999999999999864 345779999999999999999999998873
No 16
>2b6o_A Aquaporin-0, lens fiber major intrinsic protein; aquaporin-0 junctions, AQP0, lens MIP, lipid-protein interac membrane, lipid bilayer; HET: MC3; 1.90A {Ovis aries} SCOP: f.19.1.1 PDB: 1ymg_A* 2b6p_A 2c32_A 1sor_A 3m9i_A*
Probab=99.83 E-value=5.9e-20 Score=154.98 Aligned_cols=138 Identities=18% Similarity=0.119 Sum_probs=105.0
Q ss_pred cchhhHHHHHHHHHHhhcccccCCCCCCCCCCCCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCccchhH
Q 028140 13 NKFAERQPIGTAAQTQDGKDYVEPPPAPLFEPGEL-KSWSFYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQG 91 (213)
Q Consensus 13 ~~Y~~aQ~~G~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~E~igT~~lv~~~~~~~~~~~~~~~~~~~~~~~~ 91 (213)
.-|+++|++|+++|+.+.+...+............ ...+..+.++.|+++|++|++.++... ...+ ..... .
T Consensus 87 ~~Yi~AQ~lGa~~ga~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~E~i~Tf~Lv~~il~~~--d~~~-~~~~~----~ 159 (263)
T 2b6o_A 87 ICYVVAQLLGAVAGAAVLYSVTPPAVRGNLALNTLHPGVSVGQATIVEIFLTLQFVLCIFATY--DERR-NGRLG----S 159 (263)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCTTTCSSCSCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHS--CTTS-CSSCC----C
T ss_pred HHHHHHHHHHHHHHHHHHHHHcccccccccccccCCccccHHHHHHHHHHHHHHHHHHHHHHh--cccC-CCCcc----c
Confidence 36999999999999998766654332211111111 123567999999999999999887642 1111 11111 2
Q ss_pred HHHHHHHHHHHHHHhhcCCCCcccchhhHHHHHhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhcc
Q 028140 92 IAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGA 158 (213)
Q Consensus 92 i~~~~G~~v~~~i~~~~~iSG~hlNPAvTla~~~~g~~~~~~~~~yi~aQ~lGa~~ga~~~~~~~~~ 158 (213)
.++.+|+.+.++.++.++.||+.+||||++++++..+ .|.++|+||++|++|+++|+++++.++.+
T Consensus 160 ~pl~IGl~v~~~~~~~g~~TG~a~NPAR~~GPal~~~-~~~~~Wvy~vgP~~Ga~la~~~y~~l~~~ 225 (263)
T 2b6o_A 160 VALAVGFSLTLGHLFGMYYTGAGMNPARSFAPAILTR-NFTNHWVYWVGPVIGAGLGSLLYDFLLFP 225 (263)
T ss_dssp HHHHHHHHHHHHHHHHTTTSTTCCCHHHHHHHHHHHT-CCTTCTHHHHHHHHHHHHHHHHHHTTTSC
T ss_pred HHHHHHHHHHHHHHhccCCCcccccHHHHHHHHHHcC-CccceeHHHHHHHHHHHHHHHHHHHHhCC
Confidence 4788999999999999999999999999999999765 79999999999999999999999988744
No 17
>2w2e_A AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating, membrane protein; HET: BOG; 1.15A {Komagataella pastoris} PDB: 2w1p_A*
Probab=99.83 E-value=3e-20 Score=157.84 Aligned_cols=134 Identities=15% Similarity=0.063 Sum_probs=103.6
Q ss_pred cchhhHHHHHHHHHHhhcccccCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCccchhHH
Q 028140 13 NKFAERQPIGTAAQTQDGKDYVEPPPAPLFEPGELKSWSFYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGI 92 (213)
Q Consensus 13 ~~Y~~aQ~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~igT~~lv~~~~~~~~~~~~~~~~~~~~~~~~i 92 (213)
.-|+++|++|+++|+.+++...+......... ....+.++.++.|+++|++|+++++..... . ... ....
T Consensus 131 ~~YiiAQ~lGA~~ga~lv~~~~~~~~~~~t~~--~~~~s~~~~~~~E~i~Tf~Lv~~Il~~~~~--~--~~~----~~~~ 200 (279)
T 2w2e_A 131 ILMAFTQIVAGMAAAGAASAMTPGEIAFANAL--GGGASRTRGLFLEAFGTAILCLTVLMLAVE--K--HRA----TWFA 200 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCSSCCCSCCC--CTTCCHHHHHHHHHHHHHHHHHHHHHHTTS--C--STT----GGGH
T ss_pred HHHHHHHHHHHHHHHHHHHHHccccceeeccC--CccccHHHHHHHHHHHHHHHHHHHHHHccC--C--CCC----cCcH
Confidence 36999999999999998876654332111111 112356789999999999999988765321 1 111 1134
Q ss_pred HHHHHHHHHHHHHhhcCCCCcccchhhHHHHHhhccCcchhHHHHHHHHHHHHHHHHHHHHHHh
Q 028140 93 AWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFM 156 (213)
Q Consensus 93 ~~~~G~~v~~~i~~~~~iSG~hlNPAvTla~~~~g~~~~~~~~~yi~aQ~lGa~~ga~~~~~~~ 156 (213)
++.+|+.+++..++.++.||+.+||||++++++....-+.++|+||++|++|+++|+++++.+.
T Consensus 201 pl~IGl~v~~~~l~~g~~TG~s~NPAR~~GPal~~~~~~~~~WVy~vgPiiGa~la~~ly~~l~ 264 (279)
T 2w2e_A 201 PFVIGIALLIAHLICIYYTGAGLNPARSFGPAVAARSFPNYHWIYWLGPILGAFLAYSIWQMWK 264 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCCSHHHHHHHHHHHTCCCTTTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccccccccChHHHHHHHHHhccchhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 7889999999999999999999999999999998764456899999999999999999999887
No 18
>3llq_A Aquaporin Z 2; aquaporin tetramer, membrane protein, water channel, structu genomics, PSI-2, protein structure initiative; 2.01A {Agrobacterium tumefaciens str}
Probab=99.82 E-value=3.1e-20 Score=155.82 Aligned_cols=135 Identities=16% Similarity=0.141 Sum_probs=100.6
Q ss_pred cchhhHHHHHHHHHHhhcccccCCCC--C------CCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCC
Q 028140 13 NKFAERQPIGTAAQTQDGKDYVEPPP--A------PLFEPGELKSWSFYRAGIAEFIATFLFLYISVLTVMGVVKSNTKC 84 (213)
Q Consensus 13 ~~Y~~aQ~~G~~~~~~~~~~~~~~~~--~------~~~~~~~~~~~~~~~~~~~E~igT~~lv~~~~~~~~~~~~~~~~~ 84 (213)
.-|+++|++|+++|+.+++...+... . ...........+.++.++.|+++|++|+++++.... .. . .
T Consensus 110 ~~YiiAQ~lGA~~ga~lv~~~~~~~~~~~~~~~~~~~~~~t~p~~~s~~~~f~~E~i~Tf~Lv~~il~~~d--~~--~-~ 184 (256)
T 3llq_A 110 VPYVIAQVAGAIVAAAALYVIATGKAGIDLGGFASNGYGEHSPGGYSLVSALLIEIILTAFFLIVILGSTH--GR--V-P 184 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTBTTCCCTTTTCCCCGGGSTTCCCHHHHHHHHHHHHHHHHHHHHHHHS--TT--S-C
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCcccccccccccccccccCCcccCHHHHHHHHHHHHHHHHHHHHHhcC--CC--C-C
Confidence 36999999999999997754432110 0 000001111345789999999999999998765431 11 1 1
Q ss_pred CccchhHHHHHHHHHHHHHHHhhcCCCCcccchhhHHHHHhh-ccCcchhHHHHHHHHHHHHHHHHHHHHHHh
Q 028140 85 STVGIQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLA-RKLSLTRALFYMVMQCLGAICGAGVVKGFM 156 (213)
Q Consensus 85 ~~~~~~~i~~~~G~~v~~~i~~~~~iSG~hlNPAvTla~~~~-g~~~~~~~~~yi~aQ~lGa~~ga~~~~~~~ 156 (213)
.. ..++.+|+.+.++.++.++.||+.+||||++++++. +...|.+.|+||++|++|+++|+++++.+.
T Consensus 185 ~~----~~pl~IGl~v~~i~~~~g~~TG~a~NPAR~lGPal~~g~~~~~~~WVy~vgPi~Ga~la~~~y~~l~ 253 (256)
T 3llq_A 185 AG----FAPIAIGLALTLIHLISIPVTNTSVNPARSTGQALFVGGWALQQLWLFWLAPIVGGAAGAVIWKLFG 253 (256)
T ss_dssp TT----CHHHHHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHCHHHHHHTTHHHHHHHHHHHHHHHHHHHHT
T ss_pred cc----chhHHHHHHHHHHHHHhccccccccChHHHHHHHHHcCCCcccceeeeeeHHHHHHHHHHHHHHHhc
Confidence 11 247889999999999999999999999999999985 444577999999999999999999998876
No 19
>3iyz_A Aquaporin-4; water transport, water channel, two-dimensional C membrane protein, baculovirus expression system, glycoprote membrane; 10.00A {Rattus norvegicus}
Probab=99.81 E-value=1.1e-19 Score=157.21 Aligned_cols=139 Identities=15% Similarity=0.132 Sum_probs=102.9
Q ss_pred cchhhHHHHHHHHHHhhcccccCCCCCCCCCCC-CCChHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCccchhH
Q 028140 13 NKFAERQPIGTAAQTQDGKDYVEPPPAPLFEPG-ELKSWSFYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQG 91 (213)
Q Consensus 13 ~~Y~~aQ~~G~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~E~igT~~lv~~~~~~~~~~~~~~~~~~~~~~~~ 91 (213)
.-|+++|++|+++|+.+++...+.......... .....+..+.++.|+++||+|++.++..... .. ..... .
T Consensus 133 ~~YiiAQ~lGA~~GA~lv~~~~~~~~~~~lg~~~~~~~~s~~~~f~~E~i~Tf~Lv~~Ila~~d~--~~-~~~~~----~ 205 (340)
T 3iyz_A 133 VFYITAQCLGAIIGAGILYLVTPPSVVGGLGVTTVHGNLTAGHGLLVELIITFQLVFTIFASCDD--KR-TDVTG----S 205 (340)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcchhhcCceeeccCCCccCHHHHHHHHHHHHHHHHHHHHHhhcC--cc-CCccc----c
Confidence 469999999999999987665543221111111 1122456789999999999999988764321 11 11011 1
Q ss_pred HHHHHHHHHHHHHHhhcCCCCcccchhhHHHHHhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhccc
Q 028140 92 IAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAG 159 (213)
Q Consensus 92 i~~~~G~~v~~~i~~~~~iSG~hlNPAvTla~~~~g~~~~~~~~~yi~aQ~lGa~~ga~~~~~~~~~~ 159 (213)
.++++|+.+.+.....++.||+.+||||++++++... .|.++|+||++|++|+++|+++++.++.|+
T Consensus 206 ~pl~IGl~v~i~~~~g~~~TG~amNPARdlGPal~~~-~w~~~WVywvgPiiGailaallY~~l~~p~ 272 (340)
T 3iyz_A 206 VALAIGFSVAIGHLFAINYTGASMNPARSFGPAVIMG-NWENHWIYWVGPIIGAVLAGALYEYVFCPD 272 (340)
T ss_pred hhhHHHHHHHHHHHhccCCccccccHHHHHHHHHHcc-CCCcEeehhHHHHHHHHHHHHHHHHHhCCC
Confidence 3678888887777777789999999999999999754 699999999999999999999999887443
No 20
>3d9s_A Aquaporin-5, AQP-5; aquaglyceroporin, membrane protein, water transport, X-RAY diffraction, lipid, phosphatidylserine, PSF, NPA, AR/R, water channel; HET: PS6; 2.00A {Homo sapiens}
Probab=99.81 E-value=6.5e-20 Score=154.90 Aligned_cols=138 Identities=14% Similarity=0.052 Sum_probs=103.1
Q ss_pred cchhhHHHHHHHHHHhhcccccCCCCCCCCCCCC-CChHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCccchhH
Q 028140 13 NKFAERQPIGTAAQTQDGKDYVEPPPAPLFEPGE-LKSWSFYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQG 91 (213)
Q Consensus 13 ~~Y~~aQ~~G~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~E~igT~~lv~~~~~~~~~~~~~~~~~~~~~~~~ 91 (213)
.-|+++|++|+++|+.+++...+........... ....+.++.++.|+++|++|+++++.... ..+. .... .
T Consensus 89 ~~Yi~AQ~lGA~~ga~l~~~~~~~~~~~~~g~~~~~~~~s~~~~~~~E~i~Tf~Lv~~il~~~d--~~~~-~~~~----~ 161 (266)
T 3d9s_A 89 FFYVAAQLVGAIAGAGILYGVAPLNARGNLAVNALNNNTTQGQAMVVELILTFQLALCIFASTD--SRRT-SPVG----S 161 (266)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCHHHHTTTTCCCCCTTSCHHHHHHHHHHHHHHHHHHHHHHHC--TTCC-SCCC----C
T ss_pred HHHHHHHHHHHHHHHHHHHHHccccccCceeeccCCccccHHHHHHHHHHHHHHHHHHHHHHhc--ccCC-Cccc----h
Confidence 3699999999999999876555321111111111 12235678999999999999999876531 1111 1111 2
Q ss_pred HHHHHHHHHHHHHHhhcCCCCcccchhhHHHHHhhccCcchh-HHHHHHHHHHHHHHHHHHHHHHhcc
Q 028140 92 IAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTR-ALFYMVMQCLGAICGAGVVKGFMGA 158 (213)
Q Consensus 92 i~~~~G~~v~~~i~~~~~iSG~hlNPAvTla~~~~g~~~~~~-~~~yi~aQ~lGa~~ga~~~~~~~~~ 158 (213)
.++.+|+.+.+.....++.||+.+||||++++++..+ .|.+ +|+||++|++|+++|+++++.++.+
T Consensus 162 ~pl~IGl~v~~~~~~~g~~TG~a~NPAR~~GPal~~~-~~~~~~Wvy~vgP~~Ga~la~~~y~~l~~~ 228 (266)
T 3d9s_A 162 PALSIGLSVTLGHLVGIYFTGCSMNPARSFGPAVVMN-RFSPAHWVFWVGPIVGAVLAAILYFYLLFP 228 (266)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHT-CCCTTHHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHcC-CcccCEeeeehHHHHHHHHHHHHHHHHhCC
Confidence 4788888888888888899999999999999999765 7888 9999999999999999999988744
No 21
>2zz9_A Aquaporin-4; water transport, water channel, two-dimensional crystal, electron diffraction, electron microscopy, membrane protein; HET: PEE; 2.80A {Rattus norvegicus} PDB: 2d57_A
Probab=99.81 E-value=9.6e-20 Score=155.99 Aligned_cols=139 Identities=15% Similarity=0.131 Sum_probs=103.3
Q ss_pred CcchhhHHHHHHHHHHhhcccccCCCCCCCCCCCC-CChHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCccchh
Q 028140 12 ANKFAERQPIGTAAQTQDGKDYVEPPPAPLFEPGE-LKSWSFYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQ 90 (213)
Q Consensus 12 ~~~Y~~aQ~~G~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~E~igT~~lv~~~~~~~~~~~~~~~~~~~~~~~ 90 (213)
..-|+++|++|+++|+.+++...++.......... ....+.++.++.|+++||+|++.++.... ..+ .....
T Consensus 93 ~~~YiiAQ~lGAi~Ga~lv~~~~~~~~~~~~g~~~~~~~~s~~~~f~~E~i~Tf~Lv~~Il~~~d--~~~-~~~~~---- 165 (301)
T 2zz9_A 93 SVFYITAQCLGAIIGAGILYLVTPPSVVGGLGVTTVHGNLTAGHGLLVELIITFQLVFTIFASCD--DKR-TDVTG---- 165 (301)
T ss_dssp THHHHHHHHHHHHHHHHHHHTTSCSCGGGTSSCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHSC--SSS-SCCSS----
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccccCceeeecCCcccchHHHHHHHHHHHHHHHHHHHHhcC--CCC-CCccc----
Confidence 34699999999999999887666532211111111 12235679999999999999998875421 111 11111
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCcccchhhHHHHHhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhcc
Q 028140 91 GIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGA 158 (213)
Q Consensus 91 ~i~~~~G~~v~~~i~~~~~iSG~hlNPAvTla~~~~g~~~~~~~~~yi~aQ~lGa~~ga~~~~~~~~~ 158 (213)
..++++|+.+.+.....++.||+.+||||++++++... .|.++|+||++|++|+++|+++++.++.+
T Consensus 166 ~~pl~IGl~v~i~~~~g~~~TG~a~NPAR~~GPal~~~-~w~~~WVy~vgPiiGailaa~ly~~l~~~ 232 (301)
T 2zz9_A 166 SVALAIGFSVAIGHLFAINYTGASMNPARSFGPAVIMG-NWENHWIYWVGPIIGAVLAGALYEYVFCP 232 (301)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHC-CCTTTTHHHHHHHHHHHHHHHHHHTTTC-
T ss_pred hHhHHHHHHHHHHHHHhcCCcccccCcHHHHHHHHHhC-CCcceeeeeeHHHHHHHHHHHHHHHHhCC
Confidence 23678888887777777789999999999999999764 79999999999999999999999988743
No 22
>3gd8_A Aquaporin-4; proton exclusion, structural genomics protein structure initiative, center for structures of MEMB proteins, CSMP, glycoprotein; HET: BOG; 1.80A {Homo sapiens}
Probab=99.80 E-value=9.8e-20 Score=150.25 Aligned_cols=136 Identities=17% Similarity=0.153 Sum_probs=98.8
Q ss_pred cchhhHHHHHHHHHHhhcccccCCCCCCCCCCC-CCChHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCccchhH
Q 028140 13 NKFAERQPIGTAAQTQDGKDYVEPPPAPLFEPG-ELKSWSFYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQG 91 (213)
Q Consensus 13 ~~Y~~aQ~~G~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~E~igT~~lv~~~~~~~~~~~~~~~~~~~~~~~~ 91 (213)
.-|+++|++|+++|+.+++...++......... .....+..+.++.|+++|++|++.++.... .++ ....+ .
T Consensus 85 ~~Yi~AQ~lGA~~ga~lv~~~~~~~~~~~lg~~~~~~~~s~~~~~~~E~i~Tf~Lv~~i~~~~~--~~~-~~~~~----~ 157 (223)
T 3gd8_A 85 VFYIAAQCLGAIIGAGILYLVTPPSVVGGLGVTMVHGNLTAGHGLLVELIITFQLVFTIFASCD--SKR-TDVTG----S 157 (223)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCHHHHTTTTCCCCCTTSCHHHHHHHHHHHHHHHHHHHHHHTC--TTC-SCCCS----C
T ss_pred HHHHHHHHHHHHHHHHHHHhhcccccccceeeccCCCccCHHHHHHHHHHHHHHHHHHHHHHhc--ccc-CCccC----C
Confidence 369999999999999987554432111011110 111235678999999999999998875421 111 11111 1
Q ss_pred HHHHHHHHHHHHHHhhcCCCCcccchhhHHHHHhhccCcchhHHHHHHHHHHHHHHHHHHHHHHh
Q 028140 92 IAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFM 156 (213)
Q Consensus 92 i~~~~G~~v~~~i~~~~~iSG~hlNPAvTla~~~~g~~~~~~~~~yi~aQ~lGa~~ga~~~~~~~ 156 (213)
.++.+|+.+.+.....++.||+.+||||++++++... .|.++|+||++|++|+++|+++++.++
T Consensus 158 ~pl~iGl~v~~~~~~g~~~TG~a~NPAR~~GP~l~~~-~w~~~Wvy~vgP~~Ga~la~~~y~~~~ 221 (223)
T 3gd8_A 158 IALAIGFSVAIGHLFAINYTGASMNPARSFGPAVIMG-NWENHWIYWVGPIIGAVLAGGLYEYVF 221 (223)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHT-CCTTTTHHHHHHHHHHHHHHHHHHHTT
T ss_pred ccHHHHHHHHHHHHhccCCccccccHHHHHHHHHHhc-CCCcEEeehhHHHHHHHHHHHHHHHHc
Confidence 3677888877666666788999999999999999765 799999999999999999999998876
No 23
>1j4n_A Aquaporin 1; membrane protein, channel protein, transmembrane helices; HET: BNG; 2.20A {Bos taurus} SCOP: f.19.1.1 PDB: 1h6i_A 1fqy_A 1ih5_A
Probab=99.79 E-value=1.8e-19 Score=152.62 Aligned_cols=138 Identities=14% Similarity=0.086 Sum_probs=100.8
Q ss_pred cchhhHHHHHHHHHHhhcccccCCCCCCCCCCCCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCccchhH
Q 028140 13 NKFAERQPIGTAAQTQDGKDYVEPPPAPLFEPGEL-KSWSFYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQG 91 (213)
Q Consensus 13 ~~Y~~aQ~~G~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~E~igT~~lv~~~~~~~~~~~~~~~~~~~~~~~~ 91 (213)
.-|+++|++|+++|+.+++...+..+....+.... ...+..+.++.|+++|++|++.++... ...+. .... .
T Consensus 97 ~~Yi~AQ~lGa~~ga~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~E~i~T~~Lv~~i~~~~--d~~~~-~~~~----~ 169 (271)
T 1j4n_A 97 IMYIIAQCVGAIVATAILSGITSSLPDNSLGLNALAPGVNSGQGLGIEIIGTLQLVLCVLATT--DRRRR-DLGG----S 169 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTCTTCCTTCCCCCTTCCTTGGGHHHHHHHHHHHHHHHHHT--CSSCC-CCCS----C
T ss_pred HHHHHHHHHHHHHHHHHHHHHccCCcccccccccCCCccchHHHHHHHHHHHHHHHHHHHhhc--cccCC-Cccc----c
Confidence 36999999999999998766554322221111111 112346788999999999999876532 11111 1111 2
Q ss_pred HHHHHHHHHHHHHHhhcCCCCcccchhhHHHHHhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhcc
Q 028140 92 IAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGA 158 (213)
Q Consensus 92 i~~~~G~~v~~~i~~~~~iSG~hlNPAvTla~~~~g~~~~~~~~~yi~aQ~lGa~~ga~~~~~~~~~ 158 (213)
.++.+|+.+.+.....++.||+.+||||++++.+... .|.++|+||++|++|+++|+++++.++.+
T Consensus 170 ~pl~IGl~v~~~~~~~~~~TG~a~NPAR~~Gpal~~~-~~~~~wv~~vgP~~Ga~la~~~y~~~~~~ 235 (271)
T 1j4n_A 170 GPLAIGFSVALGHLLAIDYTGCGINPARSFGSSVITH-NFQDHWIFWVGPFIGAALAVLIYDFILAP 235 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHTT-CCTTTTHHHHHHHHHHHHHHHHHHTTTSC
T ss_pred HHHHHHHHHHHHHHhccCCCccccChHHHHHHHHHhC-CCcceeHHHHHHHHHHHHHHHHHHHHhCC
Confidence 4788888888777777789999999999999998764 78999999999999999999999988744
No 24
>3cn5_A Aquaporin; membrane protein, transmembrane, transport, transport protein; 2.05A {Spinacia oleracea} PDB: 3cn6_A 3cll_A 1z98_A 2b5f_A
Probab=99.79 E-value=8.8e-20 Score=156.52 Aligned_cols=144 Identities=19% Similarity=0.145 Sum_probs=102.8
Q ss_pred cchhhHHHHHHHHHHhhcccccCCCCC-CCCCCC-CCChHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCccchh
Q 028140 13 NKFAERQPIGTAAQTQDGKDYVEPPPA-PLFEPG-ELKSWSFYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQ 90 (213)
Q Consensus 13 ~~Y~~aQ~~G~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~E~igT~~lv~~~~~~~~~~~~~~~~~~~~~~~ 90 (213)
.-|+++|++|+++|+.+++...++... ...... .....+.++.++.|+++||+|+++++... ...+... .+....
T Consensus 143 ~~YiiAQ~lGAi~Ga~lv~~~~~~~~~~~~~g~~~~~~~~s~~~~f~~E~i~TfiLv~~Il~~~-d~~~~~~--~~~~~~ 219 (304)
T 3cn5_A 143 LVYMIAQCLGAICGVGLVKAFMKGPYNQFGGGANSVALGYNKGTALGAEIIGTFVLVYTVFSAT-DPKRSAR--DSHVPI 219 (304)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCHHHHHHTTTTCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHTE-EEEEEST--TSCCEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhccCcccccCCCccHHHHHHHHHHHHHHHHHHHhhee-cCccCCC--Cccccc
Confidence 369999999999999987544321100 000000 01123567899999999999999887422 1111111 000001
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCcccchhhHHHHHhh--ccCcchhHHHHHHHHHHHHHHHHHHHHHHhccc
Q 028140 91 GIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLA--RKLSLTRALFYMVMQCLGAICGAGVVKGFMGAG 159 (213)
Q Consensus 91 ~i~~~~G~~v~~~i~~~~~iSG~hlNPAvTla~~~~--g~~~~~~~~~yi~aQ~lGa~~ga~~~~~~~~~~ 159 (213)
..++.+|+.+++..++.++.||+.+||||++++++. +...|.+.|+||++|++|+++|+++++.++.++
T Consensus 220 lapl~IGl~V~~~~l~~g~~TG~amNPAR~~GPal~~~~~~~w~~~WvywvgPiiGa~laa~~y~~l~~~~ 290 (304)
T 3cn5_A 220 LAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIFNSNKVWDDQWIFWVGPFIGAAVAAAYHQYVLRAA 290 (304)
T ss_dssp ECHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHHCCHHHHHHTTHHHHHHHHHHHHHHHHHHTTSCCC
T ss_pred chHHHHHHHHHHHHHhccCCCccccChHHHHHHHHHHccCCCcCceEEEeehHHHHHHHHHHHHHHHhCCC
Confidence 237889999999999999999999999999999987 234799999999999999999999999887443
No 25
>1ldf_A Glycerol uptake facilitator protein; glycerol-conducting membrane channel protein, transport PROT; HET: BOG; 2.10A {Escherichia coli} SCOP: f.19.1.1 PDB: 1fx8_A* 1lda_A* 1ldi_A*
Probab=99.76 E-value=9.6e-19 Score=148.94 Aligned_cols=140 Identities=17% Similarity=0.114 Sum_probs=100.1
Q ss_pred cchhhHHHHHHHHHHhhcccccCCC---------CCC----------CCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHH
Q 028140 13 NKFAERQPIGTAAQTQDGKDYVEPP---------PAP----------LFEPGELKSWSFYRAGIAEFIATFLFLYISVLT 73 (213)
Q Consensus 13 ~~Y~~aQ~~G~~~~~~~~~~~~~~~---------~~~----------~~~~~~~~~~~~~~~~~~E~igT~~lv~~~~~~ 73 (213)
.-|+++|++|+++|+.+++...++. ... ..........+.++.++.|+++|++|+++++..
T Consensus 87 ~~Yi~AQ~lGA~~ga~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~f~t~p~~~~s~~~~~~~E~i~Tf~Lv~~il~~ 166 (281)
T 1ldf_A 87 IPFIVSQVAGAFCAAALVYGLYYNLFFDFEQTHHIVRGSVESVDLAGTFSTYPNPHINFVQAFAVEMVITAILMGLILAL 166 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCTTSGGGHHHHTTTSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccceeeccCCccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 3699999999999998764332110 000 000001112357899999999999999988764
Q ss_pred HhhccccCCCCCccchhHHHHHHHHHHHHHHHhhcCCCCcccchhhHHHHHhhc------cCcch------hHHHHHHHH
Q 028140 74 VMGVVKSNTKCSTVGIQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLAR------KLSLT------RALFYMVMQ 141 (213)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~i~~~~G~~v~~~i~~~~~iSG~hlNPAvTla~~~~g------~~~~~------~~~~yi~aQ 141 (213)
.. .++.. .. ....++.+|+.++.+.++.++.||+.+||||++++++.. ...|. ++|+||++|
T Consensus 167 ~d--~~~~~--~~--~~~~pl~IGl~v~~~~~~~g~~TG~a~NPAR~~GPal~~~~~g~g~~~~~~~~~~~~~WVy~vgP 240 (281)
T 1ldf_A 167 TD--DGNGV--PR--GPLAPLLIGLLIAVIGASMGPLTGTAMNPARDFGPKVFAWLAGWGNVAFTGGRDIPYFLVPLFGP 240 (281)
T ss_dssp HC--TTSSS--CC--GGGHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHTTTTTHHHHTTCSSCTTHHHHHHH
T ss_pred hc--cCCCC--cc--cchHHHHHHHHHHHHHHhcccccccccCcHhhHHHHHHHHhcccccccccccCCCceeeHHhHHH
Confidence 32 11110 00 113478999999999999999999999999999998853 22333 699999999
Q ss_pred HHHHHHHHHHHHHHhcc
Q 028140 142 CLGAICGAGVVKGFMGA 158 (213)
Q Consensus 142 ~lGa~~ga~~~~~~~~~ 158 (213)
++|+++|+++++.++.+
T Consensus 241 i~Ga~la~~~y~~l~~~ 257 (281)
T 1ldf_A 241 IVGAIVGAFAYRKLIGR 257 (281)
T ss_dssp HHHHHHHHHHHHHHTGG
T ss_pred HHHHHHHHHHHHHHhCc
Confidence 99999999999998843
No 26
>3c02_A Aquaglyceroporin; membrane protein, glycerol, water, transport, structural GEN PSI-2, protein structure initiative; HET: BOG; 2.05A {Plasmodium falciparum}
Probab=99.75 E-value=8e-19 Score=147.75 Aligned_cols=140 Identities=19% Similarity=0.156 Sum_probs=99.8
Q ss_pred cchhhHHHHHHHHHHhhcccccCCC----CCCCC--CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCc
Q 028140 13 NKFAERQPIGTAAQTQDGKDYVEPP----PAPLF--EPGELKSWSFYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCST 86 (213)
Q Consensus 13 ~~Y~~aQ~~G~~~~~~~~~~~~~~~----~~~~~--~~~~~~~~~~~~~~~~E~igT~~lv~~~~~~~~~~~~~~~~~~~ 86 (213)
.-|+++|++|+++|+.+++...++. ..+.. ......+....+.++.|+++|++|++.++..... ++.. .
T Consensus 89 ~~Yi~AQ~lGa~~ga~l~~~~~~~~~~~~~~~~~~~~~~~~~t~p~~~~~~~E~i~Tf~Lv~~i~~~~d~--~~~~---~ 163 (258)
T 3c02_A 89 PVYFFAQLLGAFVGTSTVYGLYHGFISNSKIPQFAWETSRNPSISLTGAFFNELILTGILLLVILVVVDE--NICG---K 163 (258)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTHHHHHTTCSCTTCSSCCCCTTSCHHHHHHHHHHHHHHHHHHHHHHHCH--HHHC---S
T ss_pred HHHHHHHHHHHHHHHHHHHHHcchhhhhccccccccccccCCCCchHHHHHHHHHHHHHHHHHHHHHhCc--ccCC---c
Confidence 4699999999999999774433210 00100 0111122234569999999999999998765321 1100 0
Q ss_pred cchhHHHHHHHHHHHHHHHhhcCCCCcccchhhHHHHHhhcc-----Ccc----hhHHHHHHHHHHHHHHHHHHHHHHhc
Q 028140 87 VGIQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARK-----LSL----TRALFYMVMQCLGAICGAGVVKGFMG 157 (213)
Q Consensus 87 ~~~~~i~~~~G~~v~~~i~~~~~iSG~hlNPAvTla~~~~g~-----~~~----~~~~~yi~aQ~lGa~~ga~~~~~~~~ 157 (213)
...+.+++.+|+.+....++.++.||+.+||||++++++... ..| .++|+||++|++|+++|+++++.++.
T Consensus 164 ~~~~~~pl~IGl~v~~~~~~~g~~TG~a~NPAR~~GPal~~~~~~g~~~~~~~~~y~Wv~~vgP~~Ga~la~~~y~~~~~ 243 (258)
T 3c02_A 164 FHILKLSSVVGLIILCIGITFGGNTGFALNPSRDLGSRFLSLIAYGKDTFTKDNFYFWVPLVAPCVGSVVFCQFYDKVIC 243 (258)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCTHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred ccccHHHHHHHHHHHHHHHhccCccCCCcChHHHHHHHHHHhccccccccccCCceeehHHHHHHHHHHHHHHHHHHHhc
Confidence 111223789999999999999999999999999999998642 245 45899999999999999999998873
No 27
>3kcu_A Probable formate transporter 1; TCDB ID 2.A.44.1.1, channel, cell inner membrane, cell membrane, membrane, transmembrane; HET: MA5; 2.24A {Escherichia coli O157} PDB: 3kcv_A 3q7k_A
Probab=71.27 E-value=43 Score=27.72 Aligned_cols=103 Identities=13% Similarity=0.083 Sum_probs=55.6
Q ss_pred hHHHHHHHHHHHHHHHhhcCC-CCcccchhhHHHHHhhccCcchhHHHHH----HHHHHHHHHHHHHHHHHhcccccccc
Q 028140 90 QGIAWAFGGMIFVLVYCTAGI-SGGHINPAVTLGLFLARKLSLTRALFYM----VMQCLGAICGAGVVKGFMGAGQYGRL 164 (213)
Q Consensus 90 ~~i~~~~G~~v~~~i~~~~~i-SG~hlNPAvTla~~~~g~~~~~~~~~yi----~aQ~lGa~~ga~~~~~~~~~~~~~~~ 164 (213)
+.-++.+++.+..+++.-+.. ||-.+ .+++ .+.++.+|.+..--| ++-++|+++-+.+++.-. .+...
T Consensus 69 ll~g~~F~vGL~lVvl~G~ELFTgn~l---~~~a-~~~~~is~~~~lr~W~~v~~gNliGal~~a~l~~~s~---~~~~~ 141 (285)
T 3kcu_A 69 LVGGICFSLGLILCVVCGADLFTSTVL---IVVA-KASGRITWGQLAKNWLNVYFGNLVGALLFVLLMWLSG---EYMTA 141 (285)
T ss_dssp HHHHHHHTHHHHHHHHHTCCCTTTTHH---HHHH-HTTTCCCHHHHTTTHHHHHHHHHHHHHHHHHHHHHHT---GGGTT
T ss_pred HHHHHHHHHHHHHHHHhCccccccchH---HHHH-HHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---ccccC
Confidence 344566666666666665553 33222 3333 457788887665444 445555555554433211 11110
Q ss_pred CC--Ccc--c---ccCCCChhHHHHHHHHHHHHHHHHHHHHc
Q 028140 165 AG--GAN--V---VAHGYTKGDGLGAEIIGTFVLVYTVFSAT 199 (213)
Q Consensus 165 ~~--~~~--~---~~~~~~~~~~~~~E~i~T~~L~~~il~~~ 199 (213)
++ +.. . -.-+.+..+.|+-=..|.++.++.+....
T Consensus 142 ~~~~~~~~~~ia~~K~~~~~~~~f~~GIlcN~lVclaVw~~~ 183 (285)
T 3kcu_A 142 NGQWGLNVLQTADHKVHHTFIEAVCLGILANLMVCLAVWMSY 183 (285)
T ss_dssp TTHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 10 000 0 01245678899999999999999887654
No 28
>3s2u_A UDP-N-acetylglucosamine--N-acetylmuramyl-(pentape pyrophosphoryl-undecaprenol N-acetylglucosamine...; N-acetylglucosaminyl transferase; HET: UD1; 2.23A {Pseudomonas aeruginosa}
Probab=59.40 E-value=1.5 Score=37.31 Aligned_cols=21 Identities=33% Similarity=0.494 Sum_probs=16.7
Q ss_pred hcCCCCcccchhhHHHHHhhc
Q 028140 107 TAGISGGHINPAVTLGLFLAR 127 (213)
Q Consensus 107 ~~~iSG~hlNPAvTla~~~~g 127 (213)
.++-||||++||.+++-.+..
T Consensus 8 ~~GGTgGHi~palala~~L~~ 28 (365)
T 3s2u_A 8 MAGGTGGHVFPALACAREFQA 28 (365)
T ss_dssp ECCSSHHHHHHHHHHHHHHHH
T ss_pred EcCCCHHHHHHHHHHHHHHHh
Confidence 344489999999999988743
No 29
>3kly_A Putative formate transporter 1; membrane protein, channel, structural genomics, PSI-2, protein structure initiative; HET: BOG; 2.10A {Vibrio cholerae} PDB: 3klz_A*
Probab=57.40 E-value=80 Score=25.98 Aligned_cols=106 Identities=14% Similarity=0.178 Sum_probs=58.0
Q ss_pred hHHHHHHHHHHHHHHHhhcCC-CCcccchhhHHHHHhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhc-cccccccCC-
Q 028140 90 QGIAWAFGGMIFVLVYCTAGI-SGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMG-AGQYGRLAG- 166 (213)
Q Consensus 90 ~~i~~~~G~~v~~~i~~~~~i-SG~hlNPAvTla~~~~g~~~~~~~~~yi~aQ~lGa~~ga~~~~~~~~-~~~~~~~~~- 166 (213)
+.-++.+++.+..+++.-+.. ||-.+ .+++ .+.++.+|.+..--|.-=.+|=++|++++-++.. ...+...++
T Consensus 68 ll~g~~F~vGL~lVvl~g~ELFTgn~l---~~~~-~~~~~is~~~~lr~W~~v~~gNliGal~~a~l~~~s~~~~~~~~~ 143 (280)
T 3kly_A 68 LLGGLAFSLGLILVVITGGELFTSSVL---ILVA-KASGKISWKELVRNWTVVYFGNLCGSIILVFIMLATRQFMEDGGQ 143 (280)
T ss_dssp HHHHHHHHHHHHHHHHHTCCCTTTTCC---CCSS-SSSSSCCSSSHHHHHHHHHHHHHHHHHHHHHHHHHHTGGGTTTTH
T ss_pred HHHHHHHHHHHHHHHHccccccccchH---HHHH-HHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccCCchH
Confidence 344566666666666665553 44333 2333 3467788887766655555555555555443320 111111010
Q ss_pred -Ccc--cc---cCCCChhHHHHHHHHHHHHHHHHHHHHc
Q 028140 167 -GAN--VV---AHGYTKGDGLGAEIIGTFVLVYTVFSAT 199 (213)
Q Consensus 167 -~~~--~~---~~~~~~~~~~~~E~i~T~~L~~~il~~~ 199 (213)
+.. .. .-+.+..+.|+-=..|.++.++.+....
T Consensus 144 ~~~~~~~ia~~K~~~~~~~~f~~GIlcN~lVclaVw~~~ 182 (280)
T 3kly_A 144 LGLNAMAISQHKLHHTFLQAFALGLMCNILVCLAVWMTF 182 (280)
T ss_dssp HHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 000 00 1235678889999999999998887654
No 30
>3tds_E Formate/nitrite transporter; membrane protein; HET: PG4 BOG; 1.98A {Clostridium difficile} PDB: 3tdo_A* 3tdr_A* 3te0_A* 3tdx_A* 3te2_A* 3te1_A* 3tdp_A*
Probab=55.97 E-value=83 Score=25.73 Aligned_cols=107 Identities=12% Similarity=0.085 Sum_probs=55.5
Q ss_pred hHHHHHHHHHHHHHHHhhcCCCCcccchhhHHHHHhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhc-cccccccCCCc
Q 028140 90 QGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMG-AGQYGRLAGGA 168 (213)
Q Consensus 90 ~~i~~~~G~~v~~~i~~~~~iSG~hlNPAvTla~~~~g~~~~~~~~~yi~aQ~lGa~~ga~~~~~~~~-~~~~~~~~~~~ 168 (213)
+.-++.+++.+..+++.-+..--+ |=.......+.++.+|.+..--|.-=.+|=++|++++-+++. ...++..+.+.
T Consensus 65 ll~g~~F~~Gl~lVvl~g~eLfTg--n~l~~~~~~~~~~~s~~~~lr~W~~v~~gNliGa~~~a~l~~~sg~~~~~~~~~ 142 (268)
T 3tds_E 65 IVMGLSFAIALSLVIMTGTELFTG--NNMVMSAGMLNKGVSIKDTSKIWAYSWVGNLIGALVLGIIFVGTGLVDKGPVAE 142 (268)
T ss_dssp HHHHHTCTHHHHHHHHHTCCCHHH--HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSSSHHHH
T ss_pred HHHHHHHHHHHHHHHHhCcccccc--chHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCcHHHH
Confidence 334555555555555543332111 322222345678889888766665555666666555544331 11111000000
Q ss_pred c--cc---cCCCChhHHHHHHHHHHHHHHHHHHHH
Q 028140 169 N--VV---AHGYTKGDGLGAEIIGTFVLVYTVFSA 198 (213)
Q Consensus 169 ~--~~---~~~~~~~~~~~~E~i~T~~L~~~il~~ 198 (213)
. .. ....+..+.|+-=..|.++.++.+...
T Consensus 143 ~~~~ia~~K~~~~~~~~f~~gIlcN~lVclaVw~~ 177 (268)
T 3tds_E 143 FFANTAASKASMPFTALFFRGILCNILVCVSVLCS 177 (268)
T ss_dssp HHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 00 123566888888889999988888754
No 31
>4fc4_A Nitrite transporter NIRC; alpha-helical inner membrane protein, ION channel, cytoplasm membrane, transport protein; HET: BOG; 2.40A {Salmonella enterica subsp}
Probab=37.54 E-value=1.6e+02 Score=23.80 Aligned_cols=106 Identities=12% Similarity=0.061 Sum_probs=53.0
Q ss_pred hHHHHHHHHHHHHHHHhhcCC-CCcccchhhHHHHHhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhccc-cccccCCC
Q 028140 90 QGIAWAFGGMIFVLVYCTAGI-SGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAG-QYGRLAGG 167 (213)
Q Consensus 90 ~~i~~~~G~~v~~~i~~~~~i-SG~hlNPAvTla~~~~g~~~~~~~~~yi~aQ~lGa~~ga~~~~~~~~~~-~~~~~~~~ 167 (213)
+.-++.+++.+..+++.-+.. || |=....-..+.++.+|.+.+--|.-=.+|=++|++++-+++... .....+..
T Consensus 59 ll~g~~F~vGl~lVvl~g~eLfTg---n~l~~~~~~~~~~~s~~~~lr~W~~v~~gNliGa~~~a~l~~~~g~~~~~~~~ 135 (261)
T 4fc4_A 59 LVMGATFGIALTLVIIAGSELFTG---HTMFLTLGVKAGTISHGQMWAILPQTWLGNLVGSVFVALLYSWGGGSLLPVDT 135 (261)
T ss_dssp HHHHHHTTHHHHHHHHTCCCCHHH---HHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTSSCTT
T ss_pred HHHHHHHHHHHHHHHHcCCccccc---chHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccCchHH
Confidence 334555555555455443322 12 32222233456788888877666555555555555443332111 11000001
Q ss_pred cc--ccc---CCCChhHHHHHHHHHHHHHHHHHHHH
Q 028140 168 AN--VVA---HGYTKGDGLGAEIIGTFVLVYTVFSA 198 (213)
Q Consensus 168 ~~--~~~---~~~~~~~~~~~E~i~T~~L~~~il~~ 198 (213)
.. ... ...+..+.|+-=..|.++.++.+...
T Consensus 136 ~~~~~ia~~K~~~~~~~~f~~gIlcN~lVclaVw~~ 171 (261)
T 4fc4_A 136 SIVHSVALAKTTAPATVLFFKGALCNWLVCLAIWMA 171 (261)
T ss_dssp SHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 011 12456788888888888888877654
Done!