Query 028141
Match_columns 213
No_of_seqs 217 out of 575
Neff 4.5
Searched_HMMs 29240
Date Mon Mar 25 10:57:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028141.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028141hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vd2_A Protein kinase C, IOTA 96.4 0.0098 3.4E-07 44.6 7.0 57 126-207 5-61 (89)
2 1wmh_B Partitioning defective- 96.4 0.0082 2.8E-07 45.0 6.4 58 126-207 5-62 (86)
3 2kkc_A Sequestosome-1; P62, PB 95.6 0.023 7.8E-07 43.6 5.8 59 126-207 4-77 (102)
4 2ktr_A Sequestosome-1; autopha 94.6 0.069 2.4E-06 42.0 6.0 59 126-207 19-92 (117)
5 1q1o_A Cell division control p 88.8 1.3 4.6E-05 33.6 6.8 64 127-209 5-74 (98)
6 2bkf_A Zinc-finger protein NBR 81.1 3.9 0.00013 30.5 6.0 54 128-207 7-60 (87)
7 1oey_J P40-PHOX, neutrophil cy 80.4 2.3 7.8E-05 32.9 4.7 38 144-207 28-65 (107)
8 1wj6_A KIAA0049 protein, RSGI 79.0 3.9 0.00013 31.3 5.6 54 127-206 14-67 (101)
9 1pqs_A Cell division control p 79.0 1.8 6.3E-05 31.3 3.6 46 145-209 8-53 (77)
10 1e8p_A Endoglucanase, dockerin 62.2 2.3 8E-05 28.3 0.8 13 194-206 20-32 (46)
11 1oey_A P67-PHOX, neutrophil cy 54.7 29 0.001 25.3 5.7 56 128-210 6-62 (83)
12 3o27_A Putative uncharacterize 44.4 15 0.0005 26.3 2.6 22 186-207 38-59 (68)
13 2j4m_A Endoglucanase 45A; dock 33.7 9.8 0.00034 29.1 0.3 12 194-205 21-32 (100)
14 2i1s_A Hypothetical protein; m 30.6 41 0.0014 27.1 3.6 37 127-163 8-46 (188)
15 2npt_A Dual specificity mitoge 30.1 91 0.0031 23.8 5.1 55 128-207 15-70 (106)
16 3brc_A Conserved protein of un 25.0 18 0.00062 29.5 0.5 10 8-17 100-109 (156)
No 1
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=96.39 E-value=0.0098 Score=44.63 Aligned_cols=57 Identities=21% Similarity=0.195 Sum_probs=44.3
Q ss_pred CcceEEEEecCccccceeecCCccCHHHHHHHHHHhhcccccCCcCCCCcccccchhhhhccCCCCCeeEEEeeCCCCee
Q 028141 126 NVAFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIGNCGSQGMKDFMNESKLIDLLNGSDYVPTYEDKDGDWM 205 (213)
Q Consensus 126 ~~~~VKV~MdG~pigRKVDL~~~~sY~eL~~aLe~MF~~~~~g~~~~~g~~~~~~e~~l~d~~~~seyvltYEDkdGDwM 205 (213)
+.+=|||+-.|.-+ .+.+...-+|++|...|.++|... .+..+++.|.|.|||+.
T Consensus 5 ~~vkvK~~~~gdi~--~~~v~~~i~~~~L~~kv~~~~~~~-----------------------~~~~f~lky~DEeGD~i 59 (89)
T 1vd2_A 5 SQVRVKAYYRGDIM--ITHFEPSISFEGLCNEVRDMCSFD-----------------------NEQLFTMKWIDEEGDPC 59 (89)
T ss_dssp SCEEEEEESSSCEE--EEEECTTCCHHHHHHHHHHHTTCC-----------------------SSCCEEEEECCSSSCCE
T ss_pred CeEEEEEEeCCeEE--EEECCCCCCHHHHHHHHHHHhCCC-----------------------CCCeEEEEEECCCCCcc
Confidence 45788999999844 444455679999999999999851 23478999999999986
Q ss_pred ec
Q 028141 206 LV 207 (213)
Q Consensus 206 LV 207 (213)
-+
T Consensus 60 ti 61 (89)
T 1vd2_A 60 TV 61 (89)
T ss_dssp EC
T ss_pred cc
Confidence 43
No 2
>1wmh_B Partitioning defective-6 homolog alpha; kinase, PB1 domain, OPCA motif, APKC, cell polarity, transferase/cell cycle complex; 1.50A {Homo sapiens} SCOP: d.15.2.2
Probab=96.37 E-value=0.0082 Score=45.00 Aligned_cols=58 Identities=22% Similarity=0.258 Sum_probs=45.6
Q ss_pred CcceEEEEecCccccceeecCCccCHHHHHHHHHHhhcccccCCcCCCCcccccchhhhhccCCCCCeeEEEeeCCCCee
Q 028141 126 NVAFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIGNCGSQGMKDFMNESKLIDLLNGSDYVPTYEDKDGDWM 205 (213)
Q Consensus 126 ~~~~VKV~MdG~pigRKVDL~~~~sY~eL~~aLe~MF~~~~~g~~~~~g~~~~~~e~~l~d~~~~seyvltYEDkdGDwM 205 (213)
+..-||..-|..--=-.||-....+|++|..-|+++|.+ ....|++.|.|.|||++
T Consensus 5 ~~l~vKskf~aE~RRFs~d~~~~~~fe~f~~lv~~lh~L------------------------~~~~f~i~Y~D~dGDLl 60 (86)
T 1wmh_B 5 SIVEVKSKFDAEFRRFALPRASVSGFQEFSRLLRAVHQI------------------------PGLDVLLGYTDAHGDLL 60 (86)
T ss_dssp CEEEEEEEETTEEEEEEEEGGGCCCHHHHHHHHHHHTTC------------------------TTCCCEEEEECTTSCEE
T ss_pred CEEEEEeecCCeeeEeEccCCCCCCHHHHHHHHHHHcCC------------------------CCCCEEEEEECCCCCEe
Confidence 456789888888433356656778999999999999984 23468999999999997
Q ss_pred ec
Q 028141 206 LV 207 (213)
Q Consensus 206 LV 207 (213)
=+
T Consensus 61 pI 62 (86)
T 1wmh_B 61 PL 62 (86)
T ss_dssp EC
T ss_pred ee
Confidence 43
No 3
>2kkc_A Sequestosome-1; P62, PB1, autophagy, ubiquitin-proteasome system, NF-KB signaling, alternative splicing, apoptosis, cytoplasm, differentiation; NMR {Rattus norvegicus} PDB: 2ktr_B
Probab=95.57 E-value=0.023 Score=43.60 Aligned_cols=59 Identities=15% Similarity=0.272 Sum_probs=43.3
Q ss_pred CcceEEEEecCc----cccceeecCC-----------ccCHHHHHHHHHHhhcccccCCcCCCCcccccchhhhhccCCC
Q 028141 126 NVAFVKVSMDGA----PYLRKVDLKL-----------YKSYQELSDALGKMFSSFTIGNCGSQGMKDFMNESKLIDLLNG 190 (213)
Q Consensus 126 ~~~~VKV~MdG~----pigRKVDL~~-----------~~sY~eL~~aLe~MF~~~~~g~~~~~g~~~~~~e~~l~d~~~~ 190 (213)
.++-||++..|. .==|++-|.. -.+|++|...++++|... .+
T Consensus 4 m~~~vKayl~~~~~~~~EiRRF~l~~~~~p~~~~~~~~~s~~~L~~~V~~lFp~l-----------------------~~ 60 (102)
T 2kkc_A 4 MSLTVKAYLLGKEEAAREIRRFSFCFSPEPEAEAAAGPGPCERLLSRVAVLFPAL-----------------------RP 60 (102)
T ss_dssp CEEEEEEEEECSSSCEEEEEEEEEESSSCSCSSSCCSCCHHHHHHHHHHHHCTTS-----------------------CS
T ss_pred ceEEEEEEEccCCCCCCceEEEEeccCCCcccccccccccHHHHHHHHHHHcccc-----------------------CC
Confidence 357789998762 2345555532 248999999999999751 24
Q ss_pred CCeeEEEeeCCCCeeec
Q 028141 191 SDYVPTYEDKDGDWMLV 207 (213)
Q Consensus 191 seyvltYEDkdGDwMLV 207 (213)
..|.+.|.|.|||+.-+
T Consensus 61 ~~f~l~Y~DedGDlIti 77 (102)
T 2kkc_A 61 GGFQAHYRAERGDLVAF 77 (102)
T ss_dssp SCEEEEEECTTCCEEEE
T ss_pred CcEEEEEECCCCCEEEe
Confidence 57999999999998754
No 4
>2ktr_A Sequestosome-1; autophagy, NF-KB signaling, HOMO-oligomer, PB1 dimer, signaling protein, transport protein; NMR {Rattus norvegicus}
Probab=94.56 E-value=0.069 Score=41.98 Aligned_cols=59 Identities=15% Similarity=0.242 Sum_probs=43.0
Q ss_pred CcceEEEEecCc----cccceeecC-----------CccCHHHHHHHHHHhhcccccCCcCCCCcccccchhhhhccCCC
Q 028141 126 NVAFVKVSMDGA----PYLRKVDLK-----------LYKSYQELSDALGKMFSSFTIGNCGSQGMKDFMNESKLIDLLNG 190 (213)
Q Consensus 126 ~~~~VKV~MdG~----pigRKVDL~-----------~~~sY~eL~~aLe~MF~~~~~g~~~~~g~~~~~~e~~l~d~~~~ 190 (213)
..+-||++..|. .==|++-|. .-.+|++|...++++|... .+
T Consensus 19 ~~l~vKayl~~~~~~~~EIRRF~l~~~~~p~~~~~~~~~s~~~L~~kV~~lFp~L-----------------------~~ 75 (117)
T 2ktr_A 19 GSLTVKAYLLGKEEAAREIRRFSFCFSPEPEAEAAAGPGPSERLLSRVAVLFPAL-----------------------RP 75 (117)
T ss_dssp -CEEEEEEEECSSSCEEEEEEEEECSSSCSCSSSCCSCCHHHHHHHHHHHHCTTS-----------------------CS
T ss_pred ccEEEEEEEecCCCCCCcEEEEEeccCCCccccccccCCCHHHHHHHHHHHcccc-----------------------CC
Confidence 467899999752 223555553 1359999999999999741 24
Q ss_pred CCeeEEEeeCCCCeeec
Q 028141 191 SDYVPTYEDKDGDWMLV 207 (213)
Q Consensus 191 seyvltYEDkdGDwMLV 207 (213)
..|.+.|.|.|||+.-+
T Consensus 76 ~~f~l~YkDEdGDlItI 92 (117)
T 2ktr_A 76 GGFQAHYRAERGDLVAF 92 (117)
T ss_dssp SCEEEEEECTTCCEEEE
T ss_pred CcEEEEEECCCCCEEEe
Confidence 47999999999998644
No 5
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B
Probab=88.76 E-value=1.3 Score=33.61 Aligned_cols=64 Identities=16% Similarity=0.306 Sum_probs=45.5
Q ss_pred cceEEEEecCcc----c--cceeecCCccCHHHHHHHHHHhhcccccCCcCCCCcccccchhhhhccCCCCCeeEEEeeC
Q 028141 127 VAFVKVSMDGAP----Y--LRKVDLKLYKSYQELSDALGKMFSSFTIGNCGSQGMKDFMNESKLIDLLNGSDYVPTYEDK 200 (213)
Q Consensus 127 ~~~VKV~MdG~p----i--gRKVDL~~~~sY~eL~~aLe~MF~~~~~g~~~~~g~~~~~~e~~l~d~~~~seyvltYEDk 200 (213)
..-|||+-+..- + .|.|=+..--+|++|...+.+-|..++. + + . .....|-|.|.
T Consensus 5 sikVKv~y~~~~~~~~~~d~~~i~V~~~i~f~~L~~kI~~Kl~~~~~-----~------------~-i-~~~~klkYkDE 65 (98)
T 1q1o_A 5 SILFRISYNNNSNNTSSSEIFTLLVEKVWNFDDLIMAINSKISNTHN-----N------------N-I-SPITKIKYQDE 65 (98)
T ss_dssp CEEEEEEECSSCSSCCCCEEEEEEECTTCCHHHHHHHHHHHHHHHCS-----S------------C-C-CCCCCEEEECS
T ss_pred cEEEEEEecCcccccccCcEEEEEecCCCCHHHHHHHHHHHHcCCcc-----c------------c-c-cceeEEEEEcC
Confidence 467888877421 2 3666677788999999999999986311 0 0 0 12457999999
Q ss_pred CCCeeeccc
Q 028141 201 DGDWMLVGD 209 (213)
Q Consensus 201 dGDwMLVGD 209 (213)
|||+...++
T Consensus 66 dGD~Vtl~s 74 (98)
T 1q1o_A 66 DGDFVVLGS 74 (98)
T ss_dssp SSCEEEECS
T ss_pred CCCEEEEcC
Confidence 999988775
No 6
>2bkf_A Zinc-finger protein NBR1 (NEXT to breast cancer 1; PB1 domain, interaction domain, Z finger; 1.56A {Homo sapiens} SCOP: d.15.2.2 PDB: 2g4s_A
Probab=81.11 E-value=3.9 Score=30.54 Aligned_cols=54 Identities=9% Similarity=0.099 Sum_probs=40.1
Q ss_pred ceEEEEecCccccceeecCCccCHHHHHHHHHHhhcccccCCcCCCCcccccchhhhhccCCCCCeeEEEeeCCCCeeec
Q 028141 128 AFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIGNCGSQGMKDFMNESKLIDLLNGSDYVPTYEDKDGDWMLV 207 (213)
Q Consensus 128 ~~VKV~MdG~pigRKVDL~~~~sY~eL~~aLe~MF~~~~~g~~~~~g~~~~~~e~~l~d~~~~seyvltYEDkdGDwMLV 207 (213)
.-+||.--|...=--|.-..--++++|...+..+|+. +.+++.|-|.|||-.-|
T Consensus 7 v~lkV~f~ge~~rf~vs~~~~~tweel~~mvk~~f~L--------------------------~~~~ikY~DEenD~v~i 60 (87)
T 2bkf_A 7 VTLNVTFKNEIQSFLVSDPENTTWADIEAMVKVSFDL--------------------------NTIQIKYLDEENEEVSI 60 (87)
T ss_dssp EEEEEEETTEEEEEEESCGGGCCHHHHHHHHHHHHTC--------------------------SSEEEEEECTTSCEEEE
T ss_pred EEEEEEEcCCeeEEEeccCCCCCHHHHHHHHHHHcCC--------------------------CceEEEEEcCCCCEEEE
Confidence 4578899888544446444467899998888888874 15789999999997543
No 7
>1oey_J P40-PHOX, neutrophil cytosol factor 4; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=80.41 E-value=2.3 Score=32.92 Aligned_cols=38 Identities=24% Similarity=0.357 Sum_probs=31.2
Q ss_pred ecCCccCHHHHHHHHHHhhcccccCCcCCCCcccccchhhhhccCCCCCeeEEEeeCCCCeeec
Q 028141 144 DLKLYKSYQELSDALGKMFSSFTIGNCGSQGMKDFMNESKLIDLLNGSDYVPTYEDKDGDWMLV 207 (213)
Q Consensus 144 DL~~~~sY~eL~~aLe~MF~~~~~g~~~~~g~~~~~~e~~l~d~~~~seyvltYEDkdGDwMLV 207 (213)
||..--.|.+|+.-..+-|... +-+|-|.|.|||+.-+
T Consensus 28 dl~~~P~ykdLl~lmr~~F~~~--------------------------DIaLNYrD~eGDLIri 65 (107)
T 1oey_J 28 DLSSTPLLKDLLELTRREFQRE--------------------------DIALNYRDAEGDLVRL 65 (107)
T ss_dssp CTTCCCCHHHHHHHHHHHHCCS--------------------------SEEEEEECTTSCEEEC
T ss_pred ccccCCCHHHHHHHHHHHhccc--------------------------ceeeeeecCCCCEEEE
Confidence 5777789999999999999742 3478999999999754
No 8
>1wj6_A KIAA0049 protein, RSGI RUH-024; PB1 domain, protein binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=78.98 E-value=3.9 Score=31.32 Aligned_cols=54 Identities=11% Similarity=0.089 Sum_probs=40.8
Q ss_pred cceEEEEecCccccceeecCCccCHHHHHHHHHHhhcccccCCcCCCCcccccchhhhhccCCCCCeeEEEeeCCCCeee
Q 028141 127 VAFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIGNCGSQGMKDFMNESKLIDLLNGSDYVPTYEDKDGDWML 206 (213)
Q Consensus 127 ~~~VKV~MdG~pigRKVDL~~~~sY~eL~~aLe~MF~~~~~g~~~~~g~~~~~~e~~l~d~~~~seyvltYEDkdGDwML 206 (213)
..-+||.--|...=--|.-..--++++|...+..+|+. + .++|.|-|.|||-.-
T Consensus 14 ~v~lkV~f~ge~~rF~Vs~~~~~tweel~~mvk~~f~L------------------------~--~~~IkY~DEenD~V~ 67 (101)
T 1wj6_A 14 QVTLNVTFKNEIQSFLVSDPENTTWADIEAMVKVSFDL------------------------N--TIQIKYLDEENEEVS 67 (101)
T ss_dssp CEEEEEEETTEEEEEEESCTTTSCHHHHHHHHHHHHCC------------------------S--SBCCEEECTTSCEEC
T ss_pred cEEEEEEEcCCeeEEEecCCCCCCHHHHHHHHHHHcCC------------------------C--ceEEEEecCCCCEEE
Confidence 34679999998654456444567899998888888875 1 468999999999754
No 9
>1pqs_A Cell division control protein 24; alpha and beta protein, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1tz1_A
Probab=78.96 E-value=1.8 Score=31.27 Aligned_cols=46 Identities=20% Similarity=0.344 Sum_probs=32.8
Q ss_pred cCCccCHHHHHHHHHHhhcccccCCcCCCCcccccchhhhhccCCCCCeeEEEeeCCCCeeeccc
Q 028141 145 LKLYKSYQELSDALGKMFSSFTIGNCGSQGMKDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVGD 209 (213)
Q Consensus 145 L~~~~sY~eL~~aLe~MF~~~~~g~~~~~g~~~~~~e~~l~d~~~~seyvltYEDkdGDwMLVGD 209 (213)
...--+|++|...+.+-|..+ .+.+ ......+-|.|.|||+...++
T Consensus 8 V~~~i~f~~L~~kI~~kl~~~-----~~~~--------------~~~~~~lkYkDEdGD~Vti~s 53 (77)
T 1pqs_A 8 VEKVWNFDDLIMAINSKISNT-----HNNN--------------ISPITKIKYQDEDGDFVVLGS 53 (77)
T ss_dssp CTTCCCSHHHHHHHHHHTTTT-----TSSC--------------SCSTTCCEEEETTTEEEECCS
T ss_pred eCCCCCHHHHHHHHHHHHccc-----cccc--------------ccceeEEEEEcCCCCEEEEcC
Confidence 344568999999999999853 1111 013567999999999987765
No 10
>1e8p_A Endoglucanase, dockerin; cellulose docking domain, cellulase; NMR {Piromyces equi} SCOP: g.55.1.1 PDB: 1e8q_A
Probab=62.20 E-value=2.3 Score=28.33 Aligned_cols=13 Identities=31% Similarity=0.741 Sum_probs=11.1
Q ss_pred eEEEeeCCCCeee
Q 028141 194 VPTYEDKDGDWML 206 (213)
Q Consensus 194 vltYEDkdGDwML 206 (213)
.++|+|.||||=.
T Consensus 20 ~V~YtD~dG~WGV 32 (46)
T 1e8p_A 20 KVEYTDASGQWGV 32 (46)
T ss_dssp CEEEEETTEEEEE
T ss_pred eEEEEcCCCcccc
Confidence 4889999999954
No 11
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=54.71 E-value=29 Score=25.30 Aligned_cols=56 Identities=13% Similarity=0.129 Sum_probs=41.5
Q ss_pred ceEEEEecCccccceeecCCccCHHHHHHHHHHhhcccccCCcCCCCcccccchhhhhccCCCCCeeEEEee-CCCCeee
Q 028141 128 AFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIGNCGSQGMKDFMNESKLIDLLNGSDYVPTYED-KDGDWML 206 (213)
Q Consensus 128 ~~VKV~MdG~pigRKVDL~~~~sY~eL~~aLe~MF~~~~~g~~~~~g~~~~~~e~~l~d~~~~seyvltYED-kdGDwML 206 (213)
.=|||+-. +.-.|....=-+|.+|...|.+-+... + .+=+|-|.| .+|.|++
T Consensus 6 ~~VKV~~~---~tvairvp~~~~y~~L~~~l~~kL~l~--~----------------------~~~~LsYk~~~s~~~vi 58 (83)
T 1oey_A 6 YTLKVHYK---YTVVMKTQPGLPYSQVRDMVSKKLELR--L----------------------EHTKLSYRPRDSNELVP 58 (83)
T ss_dssp EEEEEESS---SEEEEEECTTCCHHHHHHHHHHHTTCC--G----------------------GGCCEEECCTTCSSCEE
T ss_pred EEEEEEEE---EEEEEECCCCCCHHHHHHHHHHHhCCC--c----------------------ceeEEEeeCCCCCCeec
Confidence 55777776 778888888899999999999988751 1 112577888 5677777
Q ss_pred cccC
Q 028141 207 VGDV 210 (213)
Q Consensus 207 VGDV 210 (213)
.+|.
T Consensus 59 ~~d~ 62 (83)
T 1oey_A 59 LSED 62 (83)
T ss_dssp CCTT
T ss_pred cChH
Confidence 7764
No 12
>3o27_A Putative uncharacterized protein; swapped-hairpin fold, transcription factor, DNA binding PROT; 2.80A {Sulfolobus islandicus}
Probab=44.36 E-value=15 Score=26.30 Aligned_cols=22 Identities=32% Similarity=0.573 Sum_probs=17.9
Q ss_pred ccCCCCCeeEEEeeCCCCeeec
Q 028141 186 DLLNGSDYVPTYEDKDGDWMLV 207 (213)
Q Consensus 186 d~~~~seyvltYEDkdGDwMLV 207 (213)
++..+.+|.+++||++|+.+|+
T Consensus 38 gIk~gD~fel~ve~kdgeIvLc 59 (68)
T 3o27_A 38 DIKPDDTFILNMEQKDGDIVLS 59 (68)
T ss_dssp TCCTTCCEEEEEEEETTEEEEE
T ss_pred CCCCCCEEEEEEecCCCeEEEE
Confidence 3445679999999999999875
No 13
>2j4m_A Endoglucanase 45A; dockerin, cellulosome, protein binding, small cysteine-rich; NMR {Piromyces equi} PDB: 2j4n_A
Probab=33.72 E-value=9.8 Score=29.07 Aligned_cols=12 Identities=33% Similarity=0.753 Sum_probs=10.6
Q ss_pred eEEEeeCCCCee
Q 028141 194 VPTYEDKDGDWM 205 (213)
Q Consensus 194 vltYEDkdGDwM 205 (213)
.++|.|.||||=
T Consensus 21 ~V~YtD~dG~WG 32 (100)
T 2j4m_A 21 KVEYTDASGQWG 32 (100)
T ss_dssp CCCEESSSCEEE
T ss_pred eEEEEcCCCccc
Confidence 588999999994
No 14
>2i1s_A Hypothetical protein; methanosarcina mazei,MAD, PSI-2,MCSG, structural genomics, protein structure initiative; 2.30A {Methanosarcina mazei} SCOP: d.343.1.1
Probab=30.64 E-value=41 Score=27.13 Aligned_cols=37 Identities=19% Similarity=0.389 Sum_probs=34.2
Q ss_pred cceEEEEecCc--cccceeecCCccCHHHHHHHHHHhhc
Q 028141 127 VAFVKVSMDGA--PYLRKVDLKLYKSYQELSDALGKMFS 163 (213)
Q Consensus 127 ~~~VKV~MdG~--pigRKVDL~~~~sY~eL~~aLe~MF~ 163 (213)
..-+||..+|. +|=|.|.+..--+..+|..+|+..|+
T Consensus 8 iy~lrV~L~~~~p~iWRri~Vp~~~TL~~LH~vIq~afg 46 (188)
T 2i1s_A 8 VYHLKLSIKGITPQIWRRIQVPENYTFLDLHKAIQAVMD 46 (188)
T ss_dssp EEEEEEEETTCSSCEEEEEEEETTCBHHHHHHHHHHHTT
T ss_pred EEEEEEEECCCCCCeEEEEEECCCCCHHHHHHHHHHHhC
Confidence 45689999986 79999999999999999999999997
No 15
>2npt_A Dual specificity mitogen-activated protein kinase; MAP2K5, MEK5, MKK PRKMK5, MAP kinase kinase 5, PHOX, PHOX-domain; 1.75A {Homo sapiens} SCOP: d.15.2.2 PDB: 2o2v_A 1wi0_A
Probab=30.10 E-value=91 Score=23.75 Aligned_cols=55 Identities=20% Similarity=0.343 Sum_probs=37.3
Q ss_pred ceEEEEec-CccccceeecCCccCHHHHHHHHHHhhcccccCCcCCCCcccccchhhhhccCCCCCeeEEEeeCCCCeee
Q 028141 128 AFVKVSMD-GAPYLRKVDLKLYKSYQELSDALGKMFSSFTIGNCGSQGMKDFMNESKLIDLLNGSDYVPTYEDKDGDWML 206 (213)
Q Consensus 128 ~~VKV~Md-G~pigRKVDL~~~~sY~eL~~aLe~MF~~~~~g~~~~~g~~~~~~e~~l~d~~~~seyvltYEDkdGDwML 206 (213)
.-+.+... |-.+--.||-..+=+|.+|+.++.+..-.-| --..-|||.+||+.-
T Consensus 15 lVIRIk~p~~g~vDwaV~~~~~L~FrDvL~~I~~vmP~aT-------------------------~TAFeYEDE~gDRIT 69 (106)
T 2npt_A 15 LVIRIKIPNSGAVDWTVHSGPQLLFRDVLDVIGQVLPEAT-------------------------TTAFEYEDEDGDRIT 69 (106)
T ss_dssp EEEEEEETTTEEEEEEECC--CCCHHHHHHHHHHHSTTSC-------------------------CSEEEEECTTSCEEE
T ss_pred eEEEEECCCCCccccccCCcccccHHHHHHHHHHhCccce-------------------------eeeeeeccccCCeeE
Confidence 44555554 5556667776677789999999887665322 124679999999987
Q ss_pred c
Q 028141 207 V 207 (213)
Q Consensus 207 V 207 (213)
|
T Consensus 70 V 70 (106)
T 2npt_A 70 V 70 (106)
T ss_dssp E
T ss_pred E
Confidence 6
No 16
>3brc_A Conserved protein of unknown function; methanobacterium thermoautotrophicum, STR genomics, MCSG, PSI-2; 1.60A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=24.97 E-value=18 Score=29.50 Aligned_cols=10 Identities=50% Similarity=0.936 Sum_probs=8.0
Q ss_pred ccccCCCCCC
Q 028141 8 ELRLGLPGGN 17 (213)
Q Consensus 8 ELrLGLPG~~ 17 (213)
-=|||.||+.
T Consensus 100 RGRLGvPGSG 109 (156)
T 3brc_A 100 RGRLGVPGSG 109 (156)
T ss_dssp EEECSSTTSC
T ss_pred cccccCCCCc
Confidence 3499999985
Done!